Query 014953
Match_columns 415
No_of_seqs 235 out of 2888
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 5.5E-67 1.2E-71 483.1 33.9 357 6-408 3-363 (393)
2 PLN02241 glucose-1-phosphate a 100.0 3.2E-60 6.9E-65 468.2 40.0 397 6-404 1-398 (436)
3 KOG1322 GDP-mannose pyrophosph 100.0 5.3E-61 1.2E-65 427.0 29.1 340 7-407 8-351 (371)
4 PRK02862 glgC glucose-1-phosph 100.0 1E-58 2.3E-63 456.1 39.0 391 6-405 1-392 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 6.3E-57 1.4E-61 441.6 37.1 361 5-407 2-382 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 1.7E-56 3.6E-61 436.4 37.1 365 6-402 1-376 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 8E-56 1.7E-60 435.1 37.0 361 6-406 13-393 (425)
8 TIGR02092 glgD glucose-1-phosp 100.0 7E-54 1.5E-58 416.2 35.8 350 7-407 1-355 (369)
9 TIGR02091 glgC glucose-1-phosp 100.0 3E-52 6.4E-57 404.0 37.1 354 11-405 1-359 (361)
10 COG1208 GCD1 Nucleoside-diphos 100.0 5.2E-53 1.1E-57 403.9 31.3 311 8-365 1-324 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 1.2E-47 2.6E-52 370.3 33.3 326 10-406 1-338 (353)
12 KOG1460 GDP-mannose pyrophosph 100.0 2.8E-46 6.1E-51 327.5 18.5 351 7-400 1-398 (407)
13 KOG1461 Translation initiation 100.0 4.5E-45 9.7E-50 349.9 27.0 376 6-407 22-419 (673)
14 KOG1462 Translation initiation 100.0 2.9E-44 6.3E-49 326.1 23.4 363 5-409 6-421 (433)
15 PRK14355 glmU bifunctional N-a 100.0 4.1E-43 8.9E-48 350.1 29.9 349 6-404 1-386 (459)
16 COG1207 GlmU N-acetylglucosami 100.0 4.3E-43 9.3E-48 324.0 25.4 307 7-360 1-326 (460)
17 PRK14358 glmU bifunctional N-a 100.0 2E-42 4.4E-47 345.4 25.7 351 1-404 1-388 (481)
18 PRK14352 glmU bifunctional N-a 100.0 9.4E-42 2E-46 341.9 28.7 238 7-289 3-252 (482)
19 COG1209 RfbA dTDP-glucose pyro 100.0 8.2E-42 1.8E-46 299.3 20.4 234 9-288 1-237 (286)
20 PRK14359 glmU bifunctional N-a 100.0 1.7E-40 3.8E-45 329.3 30.7 353 7-414 1-409 (430)
21 TIGR01173 glmU UDP-N-acetylglu 100.0 5.2E-41 1.1E-45 335.2 26.2 352 9-414 1-432 (451)
22 PRK09451 glmU bifunctional N-a 100.0 9.6E-41 2.1E-45 332.9 25.7 309 6-366 3-347 (456)
23 PRK14356 glmU bifunctional N-a 100.0 4E-40 8.7E-45 328.9 27.2 340 8-399 5-365 (456)
24 PRK14353 glmU bifunctional N-a 100.0 2.4E-39 5.3E-44 322.4 30.2 359 5-414 2-422 (446)
25 TIGR01105 galF UTP-glucose-1-p 100.0 8.1E-40 1.8E-44 304.8 23.9 244 6-287 1-277 (297)
26 PRK14354 glmU bifunctional N-a 100.0 4.3E-39 9.2E-44 321.8 28.1 356 7-414 1-435 (458)
27 PRK14357 glmU bifunctional N-a 100.0 1.3E-38 2.8E-43 317.4 29.1 302 9-366 1-336 (448)
28 PRK10122 GalU regulator GalF; 100.0 7.6E-39 1.7E-43 299.2 24.3 246 6-289 1-280 (297)
29 PF00483 NTP_transferase: Nucl 100.0 1E-38 2.3E-43 293.5 21.9 239 10-288 1-247 (248)
30 cd06425 M1P_guanylylT_B_like_N 100.0 2.8E-38 6E-43 287.6 23.8 232 9-287 1-233 (233)
31 cd06428 M1P_guanylylT_A_like_N 100.0 3.9E-38 8.4E-43 290.8 23.6 235 11-286 1-257 (257)
32 PRK14360 glmU bifunctional N-a 100.0 8.8E-38 1.9E-42 311.7 27.0 353 9-414 2-432 (450)
33 PRK15480 glucose-1-phosphate t 100.0 1.1E-36 2.4E-41 283.1 25.0 235 6-287 1-241 (292)
34 TIGR02623 G1P_cyt_trans glucos 100.0 8E-37 1.7E-41 280.8 23.7 234 10-290 1-248 (254)
35 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.3E-36 2.9E-41 277.8 23.4 231 9-286 1-237 (240)
36 TIGR01207 rmlA glucose-1-phosp 100.0 3.4E-36 7.4E-41 279.6 23.5 231 10-287 1-237 (286)
37 PRK13389 UTP--glucose-1-phosph 100.0 7.6E-36 1.6E-40 279.4 24.4 248 3-287 3-280 (302)
38 cd02541 UGPase_prokaryotic Pro 100.0 8.7E-36 1.9E-40 276.9 22.1 243 9-287 1-265 (267)
39 cd02524 G1P_cytidylyltransfera 100.0 1.9E-35 4.1E-40 272.1 23.7 243 11-289 1-248 (253)
40 TIGR01099 galU UTP-glucose-1-p 100.0 2E-35 4.4E-40 273.4 21.0 240 9-282 1-260 (260)
41 cd06422 NTP_transferase_like_1 100.0 2.7E-35 5.8E-40 265.9 19.5 219 10-282 1-221 (221)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.5E-34 3.3E-39 263.7 24.1 232 9-288 1-235 (236)
43 cd06915 NTP_transferase_WcbM_l 100.0 1.2E-33 2.6E-38 255.5 21.1 223 11-283 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 5.4E-33 1.2E-37 250.2 21.7 217 11-274 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 2.2E-32 4.8E-37 246.7 22.4 219 11-283 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 5.1E-33 1.1E-37 244.1 15.1 250 6-290 2-273 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 3.4E-32 7.4E-37 244.7 16.4 205 9-233 1-217 (217)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.5E-30 5.4E-35 229.6 18.5 199 11-273 1-200 (200)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 5.1E-30 1.1E-34 233.1 20.1 222 11-279 1-230 (231)
50 cd02523 PC_cytidylyltransferas 100.0 2.8E-30 6.2E-35 234.4 17.4 222 11-283 1-229 (229)
51 cd02507 eIF-2B_gamma_N_like Th 100.0 3.9E-28 8.4E-33 217.9 14.2 203 9-233 1-216 (216)
52 cd04198 eIF-2B_gamma_N The N-t 100.0 9.6E-28 2.1E-32 215.1 14.0 201 9-233 1-214 (214)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 2.6E-27 5.5E-32 219.7 15.5 233 9-278 1-273 (274)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.2E-26 4.7E-31 208.9 19.6 221 11-279 1-229 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 7.7E-25 1.7E-29 217.1 19.8 240 9-283 1-281 (468)
56 COG1213 Predicted sugar nucleo 99.9 6.7E-25 1.4E-29 189.8 15.4 224 6-288 1-230 (239)
57 PRK05450 3-deoxy-manno-octulos 99.9 2.8E-24 6E-29 197.2 20.4 234 8-286 2-244 (245)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 9E-24 2E-28 193.0 19.6 227 8-284 1-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 5.2E-22 1.1E-26 181.3 19.7 225 8-285 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 1.3E-20 2.7E-25 185.2 16.3 243 8-283 5-290 (478)
61 COG4750 LicC CTP:phosphocholin 99.8 1.4E-19 3E-24 150.1 12.4 220 9-288 1-227 (231)
62 COG0836 {ManC} Mannose-1-phosp 99.8 9.8E-19 2.1E-23 157.8 16.0 242 8-284 1-283 (333)
63 PLN02917 CMP-KDO synthetase 99.8 4.9E-18 1.1E-22 158.3 21.1 237 6-289 45-290 (293)
64 TIGR00453 ispD 2-C-methyl-D-er 99.7 2.6E-16 5.7E-21 141.5 16.6 210 11-285 2-216 (217)
65 PRK00155 ispD 2-C-methyl-D-ery 99.7 3.4E-16 7.4E-21 141.7 17.0 219 6-288 1-224 (227)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.7 4.4E-15 9.6E-20 134.9 18.2 229 11-279 2-237 (238)
67 PRK09382 ispDF bifunctional 2- 99.7 3.8E-15 8.2E-20 143.1 18.2 209 5-288 2-214 (378)
68 cd02516 CDP-ME_synthetase CDP- 99.7 2.4E-15 5.1E-20 135.4 15.8 212 10-281 2-217 (218)
69 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 2.4E-16 5.2E-21 141.5 8.8 147 249-414 31-202 (231)
70 TIGR00454 conserved hypothetic 99.7 6.7E-16 1.5E-20 134.2 11.3 125 9-165 1-127 (183)
71 PF12804 NTP_transf_3: MobA-li 99.6 1.3E-15 2.8E-20 130.2 10.3 121 11-164 1-123 (160)
72 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.4E-14 3E-19 130.8 17.2 218 8-285 1-222 (223)
73 PRK13385 2-C-methyl-D-erythrit 99.6 1.3E-14 2.8E-19 131.6 16.7 218 8-287 2-224 (230)
74 TIGR03310 matur_ygfJ molybdenu 99.6 1.6E-14 3.4E-19 126.8 14.1 120 11-160 2-123 (188)
75 COG2266 GTP:adenosylcobinamide 99.6 1.2E-13 2.5E-18 114.5 14.3 110 9-153 1-112 (177)
76 PRK00317 mobA molybdopterin-gu 99.6 1.4E-13 3E-18 121.4 15.5 114 6-154 1-116 (193)
77 PLN02728 2-C-methyl-D-erythrit 99.5 4E-13 8.6E-18 122.4 16.8 218 5-287 21-245 (252)
78 cd04182 GT_2_like_f GT_2_like_ 99.5 6.5E-14 1.4E-18 122.6 11.0 121 9-159 1-123 (186)
79 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 1.5E-13 3.3E-18 103.0 9.1 78 308-404 2-81 (81)
80 PRK02726 molybdopterin-guanine 99.5 1.8E-12 4E-17 114.7 15.6 113 6-153 5-119 (200)
81 COG2068 Uncharacterized MobA-r 99.5 2.7E-12 5.8E-17 109.6 15.2 122 5-155 2-125 (199)
82 cd04651 LbH_G1P_AT_C Glucose-1 99.4 8E-13 1.7E-17 103.9 9.8 78 312-408 2-80 (104)
83 TIGR03584 PseF pseudaminic aci 99.4 1.4E-11 2.9E-16 110.8 18.2 214 11-285 2-219 (222)
84 cd02503 MobA MobA catalyzes th 99.4 9.6E-13 2.1E-17 114.8 9.4 107 9-152 1-109 (181)
85 PRK00560 molybdopterin-guanine 99.4 4.7E-12 1E-16 111.7 13.3 109 1-148 1-112 (196)
86 PRK14489 putative bifunctional 99.4 8.3E-12 1.8E-16 120.5 15.7 121 5-158 2-124 (366)
87 PF01128 IspD: 2-C-methyl-D-er 99.4 3.5E-11 7.5E-16 107.0 16.1 214 9-286 1-219 (221)
88 cd03356 LbH_G1P_AT_C_like Left 99.4 5.7E-12 1.2E-16 94.0 9.3 75 308-401 2-79 (79)
89 COG1211 IspD 4-diphosphocytidy 99.3 1.5E-10 3.2E-15 102.5 19.2 222 6-287 2-227 (230)
90 COG1212 KdsB CMP-2-keto-3-deox 99.3 4.9E-11 1.1E-15 102.6 15.4 235 7-288 2-244 (247)
91 TIGR03202 pucB xanthine dehydr 99.3 9.4E-12 2E-16 109.4 11.0 122 10-156 2-125 (190)
92 KOG1461 Translation initiation 99.3 2.8E-12 6.1E-17 124.9 7.8 94 299-405 327-423 (673)
93 TIGR02665 molyb_mobA molybdopt 99.3 9.2E-12 2E-16 109.1 9.5 117 9-158 1-119 (186)
94 cd02518 GT2_SpsF SpsF is a gly 99.3 1E-10 2.3E-15 106.3 16.0 115 11-160 2-121 (233)
95 cd05636 LbH_G1P_TT_C_like Puta 99.3 8E-12 1.7E-16 106.9 8.2 65 305-369 35-102 (163)
96 KOG1462 Translation initiation 99.3 3.6E-12 7.8E-17 117.4 6.2 68 321-407 334-402 (433)
97 PRK14490 putative bifunctional 99.3 7E-11 1.5E-15 114.4 14.5 111 5-151 171-283 (369)
98 cd05787 LbH_eIF2B_epsilon eIF- 99.2 3.9E-11 8.5E-16 89.4 8.8 75 308-401 2-79 (79)
99 cd05824 LbH_M1P_guanylylT_C Ma 99.2 6.4E-11 1.4E-15 88.5 9.8 74 309-401 3-80 (80)
100 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 2.2E-11 4.8E-16 107.3 8.3 117 296-415 24-187 (193)
101 TIGR03308 phn_thr-fam phosphon 99.2 2.7E-11 5.8E-16 107.0 7.9 94 318-414 16-150 (204)
102 cd04745 LbH_paaY_like paaY-lik 99.2 6.3E-11 1.4E-15 100.4 9.3 94 295-407 8-113 (155)
103 COG1044 LpxD UDP-3-O-[3-hydrox 99.2 9.9E-11 2.2E-15 107.4 10.6 33 372-404 216-250 (338)
104 TIGR02287 PaaY phenylacetic ac 99.2 9.3E-11 2E-15 102.3 8.0 102 295-403 16-129 (192)
105 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.4E-10 3.1E-15 86.8 7.9 68 323-409 1-69 (81)
106 COG0746 MobA Molybdopterin-gua 99.1 1.2E-10 2.7E-15 101.4 8.3 113 6-156 2-116 (192)
107 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 2.7E-10 5.8E-15 107.8 10.1 101 269-369 66-172 (324)
108 cd04180 UGPase_euk_like Eukary 99.1 2.9E-09 6.2E-14 98.0 15.9 217 10-238 2-241 (266)
109 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 1.2E-09 2.6E-14 103.0 13.7 217 6-239 13-257 (323)
110 cd05636 LbH_G1P_TT_C_like Puta 99.1 3.4E-10 7.4E-15 96.9 9.1 90 297-405 9-102 (163)
111 cd03356 LbH_G1P_AT_C_like Left 99.1 3.7E-10 8.1E-15 84.1 8.0 66 323-407 1-67 (79)
112 cd05787 LbH_eIF2B_epsilon eIF- 99.1 3.8E-10 8.2E-15 84.0 8.0 64 323-405 1-65 (79)
113 COG1207 GlmU N-acetylglucosami 99.1 2.2E-10 4.7E-15 107.6 7.3 74 296-369 277-353 (460)
114 TIGR03570 NeuD_NnaD sugar O-ac 99.1 1.3E-09 2.8E-14 96.5 12.0 126 269-413 62-194 (201)
115 PLN02472 uncharacterized prote 99.1 4.1E-10 8.9E-15 101.7 8.5 92 296-406 68-177 (246)
116 cd04650 LbH_FBP Ferripyochelin 99.1 7.2E-10 1.6E-14 93.7 9.4 93 295-406 8-112 (154)
117 cd04646 LbH_Dynactin_6 Dynacti 99.1 7.1E-10 1.5E-14 94.7 9.0 72 295-366 7-95 (164)
118 PLN02296 carbonate dehydratase 99.1 5.6E-10 1.2E-14 102.2 8.8 72 295-366 60-148 (269)
119 cd03360 LbH_AT_putative Putati 99.0 2.5E-09 5.4E-14 94.1 11.5 101 295-414 86-192 (197)
120 cd03353 LbH_GlmU_C N-acetyl-gl 99.0 6.7E-10 1.5E-14 97.8 7.6 89 305-396 15-108 (193)
121 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.0 7.6E-10 1.7E-14 101.7 8.1 74 338-414 103-180 (254)
122 cd03358 LbH_WxcM_N_like WcxM-l 99.0 8.2E-10 1.8E-14 89.2 7.3 90 321-414 16-109 (119)
123 PRK05289 UDP-N-acetylglucosami 99.0 7.8E-10 1.7E-14 101.8 8.0 90 322-414 81-183 (262)
124 PRK00892 lpxD UDP-3-O-[3-hydro 99.0 1.5E-09 3.2E-14 104.2 10.0 14 220-233 52-65 (343)
125 PRK05289 UDP-N-acetylglucosami 99.0 9.7E-10 2.1E-14 101.2 8.4 76 295-370 4-96 (262)
126 PRK13627 carnitine operon prot 99.0 1.3E-09 2.8E-14 95.4 8.6 93 296-407 19-123 (196)
127 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.0 7.9E-10 1.7E-14 101.6 7.6 33 321-353 47-93 (254)
128 PRK14355 glmU bifunctional N-a 99.0 7.8E-10 1.7E-14 110.8 8.2 116 296-414 277-439 (459)
129 TIGR01852 lipid_A_lpxA acyl-[a 99.0 6.4E-10 1.4E-14 102.2 6.7 73 339-414 103-179 (254)
130 PRK05293 glgC glucose-1-phosph 99.0 1.1E-09 2.3E-14 107.1 8.3 94 295-394 284-380 (380)
131 cd04645 LbH_gamma_CA_like Gamm 99.0 1.9E-09 4.1E-14 91.2 8.7 72 295-366 7-89 (153)
132 PRK12461 UDP-N-acetylglucosami 99.0 1.9E-09 4E-14 98.5 8.1 35 380-414 144-179 (255)
133 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.6E-09 5.7E-14 79.7 7.3 63 324-405 2-66 (80)
134 COG1083 NeuA CMP-N-acetylneura 98.9 1.7E-08 3.7E-13 86.5 12.9 219 6-287 1-223 (228)
135 cd00710 LbH_gamma_CA Gamma car 98.9 2.7E-09 5.9E-14 91.5 8.3 109 295-406 10-132 (167)
136 PRK14356 glmU bifunctional N-a 98.9 1.4E-09 3E-14 109.0 7.2 106 306-414 288-440 (456)
137 PRK14500 putative bifunctional 98.9 2.3E-09 4.9E-14 102.0 8.2 109 8-152 160-270 (346)
138 PTZ00339 UDP-N-acetylglucosami 98.9 2.7E-08 5.8E-13 98.0 15.7 216 7-238 105-351 (482)
139 cd04651 LbH_G1P_AT_C Glucose-1 98.9 3.5E-09 7.7E-14 83.2 7.3 76 296-391 4-80 (104)
140 cd04745 LbH_paaY_like paaY-lik 98.9 4E-09 8.7E-14 89.3 8.0 76 321-404 18-104 (155)
141 cd05635 LbH_unknown Uncharacte 98.9 8.2E-09 1.8E-13 80.4 9.0 80 308-408 14-97 (101)
142 cd00710 LbH_gamma_CA Gamma car 98.9 3.8E-09 8.3E-14 90.6 7.8 97 308-407 5-116 (167)
143 TIGR01173 glmU UDP-N-acetylglu 98.9 1.7E-09 3.7E-14 108.2 6.4 94 308-404 264-379 (451)
144 TIGR01852 lipid_A_lpxA acyl-[a 98.9 5.4E-09 1.2E-13 96.1 9.2 80 321-403 46-150 (254)
145 COG0448 GlgC ADP-glucose pyrop 98.9 4.2E-09 9E-14 99.0 8.0 67 303-389 294-361 (393)
146 PLN02474 UTP--glucose-1-phosph 98.9 2.4E-07 5.2E-12 90.5 20.3 355 6-396 77-466 (469)
147 TIGR02287 PaaY phenylacetic ac 98.9 8.3E-09 1.8E-13 90.0 9.2 97 308-407 11-121 (192)
148 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 6.4E-09 1.4E-13 93.8 8.1 99 298-403 105-216 (269)
149 PRK00892 lpxD UDP-3-O-[3-hydro 98.8 5E-09 1.1E-13 100.6 7.0 13 340-352 169-181 (343)
150 PRK14358 glmU bifunctional N-a 98.8 3.9E-09 8.6E-14 106.0 6.2 73 296-368 279-354 (481)
151 PRK13627 carnitine operon prot 98.8 2E-08 4.4E-13 87.9 9.7 66 320-404 27-102 (196)
152 cd03352 LbH_LpxD UDP-3-O-acyl- 98.8 1E-08 2.2E-13 91.2 8.1 34 380-413 157-191 (205)
153 cd03350 LbH_THP_succinylT 2,3, 98.8 1.8E-08 4E-13 83.7 9.0 57 298-354 6-66 (139)
154 COG0663 PaaY Carbonic anhydras 98.8 1.7E-08 3.6E-13 84.7 8.5 92 295-405 19-122 (176)
155 PRK02862 glgC glucose-1-phosph 98.8 9.9E-09 2.1E-13 101.6 8.4 65 305-369 308-392 (429)
156 cd04646 LbH_Dynactin_6 Dynacti 98.8 1.5E-08 3.3E-13 86.5 8.3 102 309-413 3-126 (164)
157 PRK14353 glmU bifunctional N-a 98.8 7.2E-09 1.6E-13 103.5 7.0 65 305-369 268-336 (446)
158 cd03359 LbH_Dynactin_5 Dynacti 98.8 2.6E-08 5.7E-13 84.9 9.1 45 322-366 43-101 (161)
159 PRK00844 glgC glucose-1-phosph 98.8 1.4E-08 3.1E-13 99.9 8.1 57 304-360 314-371 (407)
160 cd04650 LbH_FBP Ferripyochelin 98.8 3.9E-08 8.5E-13 83.1 9.6 78 320-405 17-105 (154)
161 cd04645 LbH_gamma_CA_like Gamm 98.8 4.7E-08 1E-12 82.6 9.8 96 309-407 3-112 (153)
162 TIGR01853 lipid_A_lpxD UDP-3-O 98.8 1.8E-08 3.9E-13 95.5 8.0 32 382-413 262-294 (324)
163 PRK11132 cysE serine acetyltra 98.8 7.7E-09 1.7E-13 94.3 5.2 40 372-414 195-235 (273)
164 PRK09451 glmU bifunctional N-a 98.8 8E-09 1.7E-13 103.4 5.8 94 307-403 267-382 (456)
165 cd04649 LbH_THP_succinylT_puta 98.8 4.7E-08 1E-12 79.8 8.8 95 300-406 8-105 (147)
166 TIGR03308 phn_thr-fam phosphon 98.8 4.4E-08 9.6E-13 86.5 9.4 59 295-354 10-70 (204)
167 PRK11830 dapD 2,3,4,5-tetrahyd 98.8 1.6E-08 3.5E-13 92.2 6.7 74 321-401 132-217 (272)
168 PLN02241 glucose-1-phosphate a 98.7 1.8E-08 3.9E-13 100.0 7.5 98 306-404 316-435 (436)
169 PRK10502 putative acyl transfe 98.7 4.5E-08 9.8E-13 85.1 8.3 102 303-414 55-166 (182)
170 PLN02296 carbonate dehydratase 98.7 6.6E-08 1.4E-12 88.6 9.7 106 301-413 54-179 (269)
171 COG1044 LpxD UDP-3-O-[3-hydrox 98.7 4.3E-08 9.3E-13 90.3 8.0 128 273-404 78-216 (338)
172 cd00208 LbetaH Left-handed par 98.7 8.3E-08 1.8E-12 70.9 8.1 73 322-404 1-76 (78)
173 PRK00725 glgC glucose-1-phosph 98.7 3.3E-08 7.2E-13 97.8 7.6 58 304-361 326-384 (425)
174 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.7 3.3E-08 7E-13 89.0 6.8 94 295-401 88-195 (231)
175 PRK14352 glmU bifunctional N-a 98.7 3E-08 6.5E-13 99.9 7.0 97 306-405 290-389 (482)
176 PRK14354 glmU bifunctional N-a 98.7 3.5E-08 7.7E-13 98.9 7.4 75 321-399 283-360 (458)
177 COG1208 GCD1 Nucleoside-diphos 98.7 5.2E-08 1.1E-12 93.8 8.1 63 320-401 260-324 (358)
178 PRK11830 dapD 2,3,4,5-tetrahyd 98.7 4.7E-08 1E-12 89.2 7.2 98 304-405 108-209 (272)
179 PRK14357 glmU bifunctional N-a 98.7 3.3E-08 7E-13 98.9 6.7 63 321-387 273-338 (448)
180 TIGR00965 dapD 2,3,4,5-tetrahy 98.6 1.2E-07 2.6E-12 85.7 8.6 83 322-407 113-208 (269)
181 KOG1460 GDP-mannose pyrophosph 98.6 6.5E-08 1.4E-12 86.6 6.7 69 337-408 306-389 (407)
182 PLN02472 uncharacterized prote 98.6 1.3E-07 2.8E-12 85.5 8.2 76 321-404 77-169 (246)
183 PLN02694 serine O-acetyltransf 98.6 8.8E-08 1.9E-12 87.4 6.4 35 380-414 219-254 (294)
184 PRK09527 lacA galactoside O-ac 98.6 2.7E-07 5.8E-12 81.1 8.9 105 304-414 60-173 (203)
185 TIGR02092 glgD glucose-1-phosp 98.6 1.3E-07 2.8E-12 92.1 7.2 80 295-395 280-360 (369)
186 PRK14360 glmU bifunctional N-a 98.5 1E-07 2.2E-12 95.4 6.3 70 316-389 274-347 (450)
187 PRK10092 maltose O-acetyltrans 98.5 3.5E-07 7.6E-12 79.3 8.3 91 321-414 73-171 (183)
188 TIGR01172 cysE serine O-acetyl 98.5 2.8E-07 6E-12 78.5 7.5 35 380-414 120-155 (162)
189 cd05635 LbH_unknown Uncharacte 98.5 3.7E-07 8E-12 71.1 7.5 65 306-390 30-96 (101)
190 cd03354 LbH_SAT Serine acetylt 98.5 3.1E-07 6.8E-12 71.7 7.2 71 321-414 22-96 (101)
191 TIGR02091 glgC glucose-1-phosp 98.5 2.7E-07 5.8E-12 89.6 8.2 76 295-390 285-361 (361)
192 PRK12461 UDP-N-acetylglucosami 98.5 3.6E-07 7.9E-12 83.5 8.1 56 298-353 4-63 (255)
193 cd03360 LbH_AT_putative Putati 98.5 5E-07 1.1E-11 79.3 8.6 25 380-404 151-176 (197)
194 PRK09677 putative lipopolysacc 98.5 7.1E-07 1.5E-11 78.3 9.1 91 321-414 65-172 (192)
195 cd03350 LbH_THP_succinylT 2,3, 98.5 6.6E-07 1.4E-11 74.3 8.4 24 380-403 82-106 (139)
196 PLN02357 serine acetyltransfer 98.5 4E-07 8.6E-12 85.5 7.7 34 380-413 285-319 (360)
197 COG1043 LpxA Acyl-[acyl carrie 98.5 4.7E-07 1E-11 79.0 7.3 109 295-403 5-131 (260)
198 cd05825 LbH_wcaF_like wcaF-lik 98.5 6.9E-07 1.5E-11 70.6 7.8 86 323-414 5-98 (107)
199 TIGR01208 rmlA_long glucose-1- 98.4 5.1E-07 1.1E-11 87.3 8.2 86 295-400 256-352 (353)
200 cd03352 LbH_LpxD UDP-3-O-acyl- 98.4 6E-07 1.3E-11 79.8 7.8 75 295-369 9-107 (205)
201 PRK14359 glmU bifunctional N-a 98.4 7.4E-07 1.6E-11 88.6 9.1 91 315-406 258-358 (430)
202 cd03357 LbH_MAT_GAT Maltose O- 98.4 1.4E-06 3E-11 74.9 9.4 86 321-414 62-160 (169)
203 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 1.1E-06 2.5E-11 80.2 9.2 91 303-404 182-280 (341)
204 cd00897 UGPase_euk Eukaryotic 98.4 1.1E-05 2.4E-10 75.0 15.9 214 7-239 2-234 (300)
205 cd04647 LbH_MAT_like Maltose O 98.4 8E-07 1.7E-11 70.4 7.3 34 380-413 65-99 (109)
206 TIGR03570 NeuD_NnaD sugar O-ac 98.4 1.1E-06 2.5E-11 77.6 8.5 30 302-331 108-139 (201)
207 PRK10191 putative acyl transfe 98.4 1.1E-06 2.5E-11 72.9 7.8 35 380-414 99-134 (146)
208 PLN02739 serine acetyltransfer 98.4 7.5E-07 1.6E-11 83.0 7.3 35 380-414 264-299 (355)
209 cd03358 LbH_WxcM_N_like WcxM-l 98.4 1.1E-06 2.4E-11 70.7 7.2 30 302-331 13-44 (119)
210 TIGR03535 DapD_actino 2,3,4,5- 98.4 1.8E-06 3.9E-11 78.5 8.6 69 324-405 187-256 (319)
211 TIGR01172 cysE serine O-acetyl 98.3 1.4E-06 3.1E-11 74.1 6.9 14 301-314 63-76 (162)
212 COG2171 DapD Tetrahydrodipicol 98.3 7.6E-07 1.6E-11 79.2 5.2 98 297-404 112-214 (271)
213 COG0663 PaaY Carbonic anhydras 98.3 1.6E-06 3.4E-11 73.0 6.6 60 321-404 72-133 (176)
214 cd03359 LbH_Dynactin_5 Dynacti 98.3 3.3E-06 7.2E-11 71.9 8.7 31 322-352 73-104 (161)
215 COG2171 DapD Tetrahydrodipicol 98.3 1.6E-06 3.5E-11 77.2 6.9 95 312-406 109-210 (271)
216 COG1861 SpsF Spore coat polysa 98.2 8.8E-06 1.9E-10 70.3 9.0 118 7-160 2-125 (241)
217 TIGR03535 DapD_actino 2,3,4,5- 98.2 6.5E-06 1.4E-10 75.0 8.4 98 312-414 154-261 (319)
218 PF02348 CTP_transf_3: Cytidyl 98.2 1.6E-05 3.6E-10 71.2 10.8 116 11-158 2-120 (217)
219 COG4284 UDP-glucose pyrophosph 98.2 4.5E-05 9.8E-10 73.6 14.0 213 6-236 103-337 (472)
220 PF07959 Fucokinase: L-fucokin 98.1 1.3E-05 2.7E-10 78.7 10.2 95 130-238 54-158 (414)
221 PLN02435 probable UDP-N-acetyl 98.1 4.5E-05 9.7E-10 75.3 13.9 213 7-238 115-364 (493)
222 cd00208 LbetaH Left-handed par 98.1 1E-05 2.2E-10 59.5 7.4 45 308-352 3-59 (78)
223 COG1045 CysE Serine acetyltran 98.1 8.7E-06 1.9E-10 69.3 7.7 39 372-413 121-160 (194)
224 PRK10502 putative acyl transfe 98.1 5.2E-06 1.1E-10 72.2 6.3 69 337-405 71-151 (182)
225 cd04649 LbH_THP_succinylT_puta 98.1 7.8E-06 1.7E-10 66.9 6.5 10 322-331 48-57 (147)
226 PF01704 UDPGP: UTP--glucose-1 98.1 4.6E-05 9.9E-10 74.5 12.8 263 6-287 54-356 (420)
227 COG1043 LpxA Acyl-[acyl carrie 98.1 1.1E-05 2.4E-10 70.6 7.0 79 307-389 5-91 (260)
228 PRK11132 cysE serine acetyltra 98.1 1E-05 2.3E-10 74.0 7.1 11 304-314 146-156 (273)
229 PRK10191 putative acyl transfe 98.0 1.8E-05 3.9E-10 65.7 7.6 23 338-360 93-116 (146)
230 PLN02739 serine acetyltransfer 98.0 1.3E-05 2.8E-10 75.0 7.2 51 302-352 208-272 (355)
231 PLN02357 serine acetyltransfer 98.0 1.4E-05 2.9E-10 75.4 7.4 59 302-360 229-302 (360)
232 cd04647 LbH_MAT_like Maltose O 98.0 2.4E-05 5.2E-10 61.8 7.4 16 338-353 22-37 (109)
233 PRK13412 fkp bifunctional fuco 98.0 8E-05 1.7E-09 79.1 13.0 197 131-357 154-374 (974)
234 cd03349 LbH_XAT Xenobiotic acy 98.0 2.6E-05 5.6E-10 65.0 7.5 40 372-414 75-115 (145)
235 PLN02694 serine O-acetyltransf 98.0 2.9E-05 6.3E-10 71.1 8.0 14 142-155 57-70 (294)
236 TIGR03536 DapD_gpp 2,3,4,5-tet 98.0 2.1E-05 4.5E-10 72.1 6.9 12 302-313 187-198 (341)
237 cd06424 UGGPase UGGPase cataly 97.9 8.4E-05 1.8E-09 69.4 11.0 218 10-239 2-253 (315)
238 cd03357 LbH_MAT_GAT Maltose O- 97.9 8.5E-05 1.8E-09 63.8 9.3 24 380-405 137-161 (169)
239 KOG1322 GDP-mannose pyrophosph 97.8 1.6E-05 3.5E-10 72.7 3.6 83 301-390 260-345 (371)
240 PRK09677 putative lipopolysacc 97.8 5.8E-05 1.3E-09 66.2 6.8 85 321-405 49-157 (192)
241 PRK10092 maltose O-acetyltrans 97.8 8.6E-05 1.9E-09 64.4 7.7 22 380-403 148-170 (183)
242 KOG3121 Dynactin, subunit p25 97.8 3.3E-05 7.2E-10 61.6 4.4 27 380-406 114-141 (184)
243 PRK09527 lacA galactoside O-ac 97.8 5.8E-05 1.3E-09 66.4 6.2 31 305-335 75-110 (203)
244 cd03354 LbH_SAT Serine acetylt 97.7 0.00013 2.8E-09 56.8 7.2 34 321-354 34-71 (101)
245 cd05825 LbH_wcaF_like wcaF-lik 97.7 0.00023 5.1E-09 56.0 7.9 11 321-331 23-33 (107)
246 KOG4042 Dynactin subunit p27/W 97.7 7E-05 1.5E-09 60.3 4.8 95 306-400 9-129 (190)
247 PRK00576 molybdopterin-guanine 97.5 0.00039 8.5E-09 60.2 7.7 95 29-153 3-101 (178)
248 PLN02830 UDP-sugar pyrophospho 97.4 0.0018 3.9E-08 66.1 12.6 221 7-239 127-384 (615)
249 TIGR02353 NRPS_term_dom non-ri 97.4 0.00039 8.4E-09 72.9 8.1 79 321-407 112-195 (695)
250 PF00132 Hexapep: Bacterial tr 97.4 0.00013 2.8E-09 45.0 2.6 32 322-353 2-35 (36)
251 TIGR02353 NRPS_term_dom non-ri 97.4 0.00044 9.5E-09 72.5 8.0 86 321-413 597-688 (695)
252 COG1045 CysE Serine acetyltran 97.3 0.00056 1.2E-08 58.4 6.0 57 300-356 68-138 (194)
253 PF14602 Hexapep_2: Hexapeptid 97.1 0.00072 1.6E-08 40.9 3.2 29 323-352 3-32 (34)
254 PF00132 Hexapep: Bacterial tr 97.0 0.00068 1.5E-08 41.6 2.9 14 338-351 2-15 (36)
255 COG0110 WbbJ Acetyltransferase 97.0 0.0025 5.5E-08 55.7 7.4 34 380-413 131-165 (190)
256 cd03349 LbH_XAT Xenobiotic acy 96.9 0.0035 7.5E-08 52.2 7.0 15 338-352 74-88 (145)
257 PF14602 Hexapep_2: Hexapeptid 96.8 0.0022 4.7E-08 38.8 3.6 22 338-360 2-23 (34)
258 KOG4042 Dynactin subunit p27/W 96.7 0.00055 1.2E-08 55.3 0.9 78 321-401 47-142 (190)
259 KOG3121 Dynactin, subunit p25 96.7 0.002 4.4E-08 51.6 3.8 25 380-404 108-133 (184)
260 KOG4750 Serine O-acetyltransfe 96.6 0.0033 7.3E-08 54.6 5.2 31 380-410 207-238 (269)
261 KOG2638 UDP-glucose pyrophosph 96.6 0.23 4.9E-06 47.5 17.0 212 7-239 102-335 (498)
262 COG4801 Predicted acyltransfer 96.5 0.0074 1.6E-07 52.7 6.4 73 317-407 29-109 (277)
263 COG4801 Predicted acyltransfer 96.4 0.0092 2E-07 52.1 6.4 61 321-405 22-83 (277)
264 KOG4750 Serine O-acetyltransfe 96.1 0.01 2.2E-07 51.6 5.0 13 338-350 201-213 (269)
265 TIGR03552 F420_cofC 2-phospho- 95.7 0.021 4.6E-07 50.1 5.8 85 41-153 31-117 (195)
266 cd00761 Glyco_tranf_GTA_type G 95.5 0.13 2.9E-06 41.8 9.5 99 33-153 2-103 (156)
267 COG0110 WbbJ Acetyltransferase 95.2 0.069 1.5E-06 46.5 7.2 80 321-405 67-151 (190)
268 PF00535 Glycos_transf_2: Glyc 93.7 0.62 1.3E-05 38.6 9.5 111 33-165 3-116 (169)
269 PF07959 Fucokinase: L-fucokin 92.2 0.24 5.2E-06 48.9 5.3 47 332-397 279-325 (414)
270 cd04186 GT_2_like_c Subfamily 88.7 4.7 0.0001 33.3 9.7 99 33-156 2-103 (166)
271 cd06434 GT2_HAS Hyaluronan syn 88.3 3.6 7.7E-05 36.6 9.2 97 33-153 5-103 (235)
272 PRK13412 fkp bifunctional fuco 86.6 1.1 2.3E-05 48.6 5.2 53 333-404 332-386 (974)
273 cd04179 DPM_DPG-synthase_like 86.4 5 0.00011 34.0 8.7 108 34-163 3-115 (185)
274 cd02525 Succinoglycan_BP_ExoA 85.3 6.5 0.00014 35.2 9.3 107 33-162 5-116 (249)
275 cd06423 CESA_like CESA_like is 85.1 6.3 0.00014 32.4 8.6 102 33-155 2-106 (180)
276 cd06439 CESA_like_1 CESA_like_ 83.9 12 0.00026 33.6 10.4 109 23-155 22-137 (251)
277 KOG2388 UDP-N-acetylglucosamin 82.6 0.85 1.8E-05 44.7 2.2 67 6-75 95-175 (477)
278 cd06442 DPM1_like DPM1_like re 80.9 15 0.00032 32.2 9.7 108 33-162 2-113 (224)
279 cd04188 DPG_synthase DPG_synth 80.8 10 0.00022 33.1 8.5 50 108-163 68-118 (211)
280 cd02510 pp-GalNAc-T pp-GalNAc- 79.3 14 0.00031 34.4 9.4 105 33-157 3-113 (299)
281 cd06427 CESA_like_2 CESA_like_ 78.0 22 0.00048 31.8 10.0 50 108-163 70-120 (241)
282 cd04195 GT2_AmsE_like GT2_AmsE 77.2 24 0.00052 30.3 9.7 100 33-155 3-108 (201)
283 PLN02726 dolichyl-phosphate be 76.5 16 0.00035 32.9 8.6 49 108-162 79-128 (243)
284 cd06433 GT_2_WfgS_like WfgS an 76.2 19 0.00041 30.6 8.7 97 34-155 4-103 (202)
285 cd04192 GT_2_like_e Subfamily 72.9 24 0.00053 30.8 8.7 106 33-158 2-113 (229)
286 cd04184 GT2_RfbC_Mx_like Myxoc 72.8 24 0.00051 30.3 8.4 39 108-152 69-108 (202)
287 PRK10073 putative glycosyl tra 72.7 20 0.00044 34.2 8.5 107 33-162 11-120 (328)
288 cd04187 DPM1_like_bac Bacteria 70.3 28 0.00061 29.3 8.2 47 108-161 66-113 (181)
289 PRK14583 hmsR N-glycosyltransf 69.2 27 0.00058 34.8 8.9 102 32-155 79-183 (444)
290 cd02520 Glucosylceramide_synth 69.2 52 0.0011 28.3 9.8 103 33-152 6-111 (196)
291 PRK11204 N-glycosyltransferase 69.1 29 0.00064 34.1 9.1 101 33-155 59-162 (420)
292 cd02522 GT_2_like_a GT_2_like_ 69.0 36 0.00079 29.6 8.9 96 33-157 4-102 (221)
293 cd06438 EpsO_like EpsO protein 65.8 82 0.0018 26.6 10.2 106 33-159 2-112 (183)
294 cd06420 GT2_Chondriotin_Pol_N 65.7 36 0.00077 28.6 7.9 100 33-152 2-104 (182)
295 cd04185 GT_2_like_b Subfamily 63.8 49 0.0011 28.4 8.6 100 34-153 3-105 (202)
296 KOG2978 Dolichol-phosphate man 63.8 99 0.0021 26.9 10.7 105 38-166 17-127 (238)
297 cd02526 GT2_RfbF_like RfbF is 63.7 49 0.0011 29.2 8.8 93 34-149 3-97 (237)
298 cd04196 GT_2_like_d Subfamily 62.8 61 0.0013 27.9 9.1 101 33-154 3-106 (214)
299 PRK10018 putative glycosyl tra 61.0 90 0.002 29.0 10.1 97 34-154 11-112 (279)
300 cd06421 CESA_CelA_like CESA_Ce 60.0 79 0.0017 27.7 9.4 100 33-154 6-111 (234)
301 PF13641 Glyco_tranf_2_3: Glyc 59.6 13 0.00028 32.8 4.1 105 33-157 6-116 (228)
302 TIGR03111 glyc2_xrt_Gpos1 puta 59.2 76 0.0017 31.6 9.9 102 33-156 54-160 (439)
303 cd06435 CESA_NdvC_like NdvC_li 56.7 61 0.0013 28.6 8.1 98 33-153 3-110 (236)
304 COG1664 CcmA Integral membrane 56.0 38 0.00083 28.1 5.9 27 334-360 47-74 (146)
305 PF04519 Bactofilin: Polymer-f 55.3 33 0.00071 26.2 5.2 29 380-408 70-98 (101)
306 TIGR03469 HonB hopene-associat 53.4 1E+02 0.0023 30.0 9.6 115 33-160 45-166 (384)
307 TIGR03472 HpnI hopanoid biosyn 53.3 72 0.0016 30.9 8.5 104 33-156 46-155 (373)
308 cd02511 Beta4Glucosyltransfera 52.2 1.1E+02 0.0023 27.2 8.9 94 33-155 5-99 (229)
309 TIGR01556 rhamnosyltran L-rham 51.1 93 0.002 28.5 8.6 91 42-156 9-102 (281)
310 TIGR02990 ectoine_eutA ectoine 49.8 90 0.0019 28.3 7.9 127 7-151 70-203 (239)
311 PRK11498 bcsA cellulose syntha 47.6 1.1E+02 0.0024 33.3 9.3 103 33-163 265-374 (852)
312 PRK00923 sirohydrochlorin coba 47.4 19 0.00041 28.8 2.8 23 38-61 44-66 (126)
313 COG1215 Glycosyltransferases, 44.9 1E+02 0.0022 30.3 8.3 106 32-157 58-167 (439)
314 PTZ00260 dolichyl-phosphate be 44.4 1.1E+02 0.0024 29.2 8.0 50 108-163 148-201 (333)
315 PRK10714 undecaprenyl phosphat 42.7 2.2E+02 0.0047 27.1 9.7 46 108-160 76-122 (325)
316 PRK13915 putative glucosyl-3-p 42.0 1.4E+02 0.003 28.1 8.2 50 108-163 101-153 (306)
317 cd06913 beta3GnTL1_like Beta 1 40.5 2.4E+02 0.0052 24.4 9.2 44 108-157 70-114 (219)
318 cd06436 GlcNAc-1-P_transferase 38.8 2.1E+02 0.0046 24.3 8.4 106 33-152 2-114 (191)
319 PF04519 Bactofilin: Polymer-f 37.4 1.1E+02 0.0024 23.2 5.7 11 380-390 87-97 (101)
320 cd06437 CESA_CaSu_A2 Cellulose 37.1 1.9E+02 0.0042 25.3 8.2 36 110-151 75-111 (232)
321 PRK05782 bifunctional sirohydr 34.5 31 0.00066 33.0 2.5 56 4-62 1-71 (335)
322 COG1216 Predicted glycosyltran 33.7 2.2E+02 0.0048 26.6 8.2 105 36-163 12-120 (305)
323 TIGR03030 CelA cellulose synth 31.0 2.6E+02 0.0057 29.9 9.0 41 109-155 215-256 (713)
324 PRK10063 putative glycosyl tra 30.5 4.1E+02 0.0088 23.9 10.6 42 108-155 68-109 (248)
325 KOG2638 UDP-glucose pyrophosph 26.8 1.2E+02 0.0025 29.8 4.8 53 335-401 445-497 (498)
326 PF05060 MGAT2: N-acetylglucos 26.2 57 0.0012 31.4 2.7 55 20-74 23-80 (356)
327 cd03409 Chelatase_Class_II Cla 24.9 65 0.0014 24.2 2.4 22 41-62 45-66 (101)
328 COG1664 CcmA Integral membrane 23.9 4E+02 0.0086 22.1 7.0 15 380-394 108-123 (146)
329 COG0381 WecB UDP-N-acetylgluco 23.5 1.6E+02 0.0034 28.7 5.1 80 47-142 23-105 (383)
330 PF10111 Glyco_tranf_2_2: Glyc 22.2 6.1E+02 0.013 23.2 9.5 37 108-150 74-111 (281)
331 cd04180 UGPase_euk_like Eukary 21.6 15 0.00032 34.0 -2.1 64 130-195 108-177 (266)
332 PF01983 CofC: Guanylyl transf 20.1 41 0.00089 30.0 0.5 107 9-152 1-113 (217)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-67 Score=483.13 Aligned_cols=357 Identities=41% Similarity=0.721 Sum_probs=322.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++++.|+|||+|.|+||.|||..++||.+||+|||+||+++|+++.++|+++|.|++.|+..++.+|+...|.|..+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 467889999999999999999999999999999999999999999999999999999999999999997665443221
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
..+++.++++.+. ..++.|+.||++|+++.+.++.+. ..+.+++++||++++.|+..|+++|.+.++++|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~~---~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRRS---DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHhc---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 1356888887665 234679999999999999988763 47999999999999999999999999999999999999
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
++.+++++||++.+|++++|+.|.|||..... ...++++|+|+|++++|..+|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99988999999999999999999999997210 12379999999999999999886543
Q ss_pred CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCcccc
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~ 321 (415)
...+|..+++|.+++.+++++|+++|||.||||.++|++||+++++..+.+.+++++|++++.....||+++ .++.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357899999999999999999999999999999999999999999977778889999999999999999999 7788899
Q ss_pred ceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 322 ~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|.|++||+|.+ +|+||+|+.+++|+.+|.|.+|+||++ |.||+||+|++|||.+||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999987 999999999999999999999999999 9999999999999999999999
Q ss_pred CcccCcc
Q 014953 402 TKYDSST 408 (415)
Q Consensus 402 ~~~~~~~ 408 (415)
|++.-..
T Consensus 357 g~~i~~~ 363 (393)
T COG0448 357 GVVIGGD 363 (393)
T ss_pred CcEEcCC
Confidence 9975443
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=3.2e-60 Score=468.18 Aligned_cols=397 Identities=73% Similarity=1.207 Sum_probs=317.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||+|+||+|||.++||||+||+|+||||+|+|++|.++|+++|+++++|+.+++.+|+...|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999866544333333
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...|.. .+..+++||+++++.++.++++......++|+|++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33335555444421 1123568999999999877753110013799999999999999999999999999999999988
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.+.+++.+||++.+|++++|.+|.|||..+..+.+++++++|.+++.+.+..++++++|+|+|++++|..+++...+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87655789999999988999999999977655667777777776665444456899999999999999777776544444
Q ss_pred cccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeeecCCccccceE
Q 014953 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (415)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~i 324 (415)
+|..++++.++.. .++++|.++|||.||++|++|++|+++++...+...++.+.+++++.....+++.+.++.+.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7778999998876 689999999999999999999999999998766556677777888877777888888888888999
Q ss_pred CCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 325 g~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
+++|+|+++.|++|+|+++|.||++|+|.+|++++++.++.+.........+..++.||++|++++++|++++.|++++.
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998889999999999999999999999999644444332222222332223566666666666666666666654
No 3
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5.3e-61 Score=427.03 Aligned_cols=340 Identities=40% Similarity=0.619 Sum_probs=292.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+.|+|+||.||.||||+|||..+|||++|++|+ |||+|++++|.++|+++|++.++|+.+++..|+.+.| +.+++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999999999998876 33444
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
++++...|++ .-|..||+++.++.+...+ ..+|+|++||++++.++.+|+++|++++++.|++++++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7777666653 3456677777777665443 24899999999999999999999999999999999999
Q ss_pred CCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
++ ++.||++..|+ .|+|.+|.|||+... ++-+++|+|+|++++|.+++ ..++
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hccc--
Confidence 88 89999999998 799999999999532 35677999999999998776 3233
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeeecCCcccc--ce
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVD--SI 323 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~--~~ 323 (415)
+|+.+++|..++++++++|.++|||.|||+|.||+.+...+++.. +.++..+..+|+.+.++.+.+ ..
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~----------~~~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSL----------PKYTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhC----------cccCCccccCCccccccEeeccccc
Confidence 589999999999999999999999999999999999987777643 334556666777776666654 44
Q ss_pred ECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCC
Q 014953 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVET 402 (415)
Q Consensus 324 ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~ 402 (415)
+|+||.|+. |++||++|+|+.|++|.+|.+++++.|++.+.+...+.+++ +.||.+++|+ +|+||+||.|.+.
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~~id~~a~lG~nV~V~d~ 346 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWARIDKNAVLGKNVIVADE 346 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCceEEecccEeccceEEecc
Confidence 688888884 59999999999999999999999999999999998887775 7799999998 9999999999887
Q ss_pred cccCc
Q 014953 403 KYDSS 407 (415)
Q Consensus 403 ~~~~~ 407 (415)
.++.+
T Consensus 347 ~~vn~ 351 (371)
T KOG1322|consen 347 DYVNE 351 (371)
T ss_pred ccccc
Confidence 76554
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1e-58 Score=456.11 Aligned_cols=391 Identities=58% Similarity=0.988 Sum_probs=317.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++++|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+...+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997544221 11
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...+.. ....+++||++|++.+++++... ..++|+|++||++++.|+.+++++|++.++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11224444433321 11233479999999999998531 13689999999999999999999999999999999987
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.+.+.+..||++.+|++++|..|.|||.......+.++.+++...+.+.....+++++|+|+|++++|..+++.. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 665446789999999889999999999865445566666666555555555567899999999999997776553 2334
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc-CCCCCCCccCCCCCccccCccCCCeeecCCccccceE
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~i 324 (415)
++.+++++.+++++++++|.++|||.|+||+++|++||++++ ...+....+.+.+++++.+.+.+++.+.++.+++++|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 677899999999999999999999999999999999999998 4445555677778888888899998888888899999
Q ss_pred CCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 325 g~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
|++|+|.++.|.+|+||++|+||++++|.+|+|++++.+.+..+-......+..++.||+||.|++|+|++++.|+++..
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 99999977889999999999999999999999998755544444222333333348899999999999999999999876
Q ss_pred c
Q 014953 405 D 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 392 ~ 392 (429)
T PRK02862 392 I 392 (429)
T ss_pred E
Confidence 5
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.3e-57 Score=441.57 Aligned_cols=361 Identities=35% Similarity=0.638 Sum_probs=292.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.|.+|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+++.+|+...|.+..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~--- 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSG--- 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccc---
Confidence 46789999999999999999999999999999998789999999999999999999999999999999975442211
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
....++...+..+. .+..+++||++|++.+++++.+. ..++|+|++||++++.++.+++++|.++++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 79 LLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred cCCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 11111221111111 12345689999999999998531 1256999999999999999999999999999999987
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC---
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF--- 241 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~--- 241 (415)
+.+.+.+..||++.+|++|+|..|.|||..+.... ....++++++|+|+|++++|..+++...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 76544468899999998899999999987532100 0012468999999999999866665421
Q ss_pred CCCCcccccchhhhcccceEEEEEe------------CceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccC
Q 014953 242 PTANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~------------~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~ 309 (415)
....++..|+++.+++++++++|.+ +|||.||+++++|++||+++|+..+...++.+.+++.+.....
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 1234667899999999899999976 5999999999999999999998765555566666777666666
Q ss_pred CCeee-cCC----ccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCC
Q 014953 310 PPSKI-DDS----KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (415)
Q Consensus 310 ~~~~i-~~~----~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 384 (415)
+++.+ .+. .+.+++||++|.|+++.|++|+||++|+|+++|+|.+|+|+++ |.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~ 359 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGR 359 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECC
Confidence 77666 332 4678999999999888999999999999999999999999999 89999
Q ss_pred CCEEeeeEECCCeEEcCCcccCc
Q 014953 385 NTKIKYEQLKPICHIVETKYDSS 407 (415)
Q Consensus 385 ~~~i~~~~i~~~~~i~~~~~~~~ 407 (415)
+|.|.+|+|+++++|++++....
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CCEEEeeEECCCCEECCCCEECC
Confidence 99999999999999999987655
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.7e-56 Score=436.44 Aligned_cols=365 Identities=35% Similarity=0.587 Sum_probs=287.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.....++....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5789999999999999999999999999999999789999999999999999999999999999999853221111110
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
...+.+++..+.. ..++|++||++||+.++++++.. ..++|+|++||++++.++.+++++|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 0113444222211 12345689999999999998531 13689999999999999999999999988989988877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
.+...+..||++.+|++++|.++.|||..+. +++.++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6544578899999988899999999986432 3678999999999998777654321
Q ss_pred CCCcccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCccc
Q 014953 243 TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV 320 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~ 320 (415)
...+|..++++.++++ .++++|.++|+|.|+|++++|++||+.++...+...++++.+.+.+.+.+.++++| +++.+.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2345667899998875 68999999999999999999999999999877777777888888888889999999 788899
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEee-----eEEC
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKY-----EQLK 394 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~-----~~i~ 394 (415)
++.||++|+|+ +.+.+|+||++|+||++|+|.+|+|++++.|+.++.+. +.++++ +.||++|++.+ .+||
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~---~~i~~~~~i~~~~~~~~~ig 368 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN---AVIGDGVIIGGGKEVITVIG 368 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC---CEECCCCEEcCCCceeEEEe
Confidence 99999999997 46789999999999999999999999995555554433 233444 44455554443 4445
Q ss_pred CCeEEcCC
Q 014953 395 PICHIVET 402 (415)
Q Consensus 395 ~~~~i~~~ 402 (415)
++++|+++
T Consensus 369 ~~~~~~~~ 376 (380)
T PRK05293 369 ENEVIGVG 376 (380)
T ss_pred CCCCCCCC
Confidence 55444444
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8e-56 Score=435.15 Aligned_cols=361 Identities=37% Similarity=0.646 Sum_probs=292.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+.+++|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++|+.+++.+|+.+.|.+.. ..
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 3779999999999999999999999999999999449999999999999999999999999999999975442110 00
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...+.. ..+++++||++|++.++++++.. ..++|+|++||++++.++.+++++|+++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 01234454433321 12345689999999999998631 13689999999999999999999999999999999887
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC---C
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---P 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~---~ 242 (415)
.+.+.+..||++.+|++++|..|.|||..+.. + +. ...++++++|+|+|++++|..++++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~----------~~--~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--M----------PG--DPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--c----------cc--CccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 75445789999999988999999999864321 0 00 012468999999999999876665421 1
Q ss_pred CCCcccccchhhhcccceEEEEEeC-----------ceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCC
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 311 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-----------g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 311 (415)
...+|..|+++.+++++++++|.++ +||.||+++++|++||++++...+...++...+++++.....++
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 2346778999999999999999985 69999999999999999999876655566666677776666677
Q ss_pred eee-c---C--CccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 312 SKI-D---D--SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 312 ~~i-~---~--~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+.+ . + +.+.+|+||+||+|+++.|++|+||++|.||++|+|.+|+||++ |.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 655 1 2 34679999999999888999999999999999999999999999 899999
Q ss_pred CEEeeeEECCCeEEcCCcccC
Q 014953 386 TKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~~~ 406 (415)
|+|.+|+|+++++|++++...
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred CEEeeEEECCCCEECCCCEEC
Confidence 999999999999999987654
No 8
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=7e-54 Score=416.21 Aligned_cols=350 Identities=23% Similarity=0.395 Sum_probs=272.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChh-HHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (415)
.+|+|||||+|+|+||+|||.++||||+||+||||||+|++++|.++|+++|+|+++|+.+ ++.+|+.+...++.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999997799999999999999999999999887 999999642212111110
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
. .....+ .++.. .+..|++++++.++++++.. ..++|+|++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~----~l~tg~~~a~~~a~~~l~~~---~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRD----DLSEGGKRYFSQNLEFLKRS---TSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCC----CcccChHHHHHHHHHHHHhC---CCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 001111 12211 11136777898898888420 13789999999999999999999999999999999988
Q ss_pred cCCCcCCccc-EEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 166 MDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 166 ~~~~~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
.+...+..|+ ++..++++++..+.+++.... ...+++|+|+|++++|..+++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 7643456774 556776778877744332211 13568999999999886666543322
Q ss_pred CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCcc-CCCCCccccCccCCCeee-cCCcccc
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DDSKIVD 321 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~i-~~~~i~~ 321 (415)
..++..++++.++++.++++|..++||.||||+++|++||+++++++.....+ ...+.+.....+.+|+++ +++.|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22345678888888889999999999999999999999999999876432222 222344444445688999 8889999
Q ss_pred ceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 322 ~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|+||+||+|+ +.|++|+||++|.|+++|+|.+|+++++ |.||++|.+++|+||++++|++
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 6799999999999999999999999999 8999999999999999999999
Q ss_pred CcccCc
Q 014953 402 TKYDSS 407 (415)
Q Consensus 402 ~~~~~~ 407 (415)
+.....
T Consensus 350 ~~~~~~ 355 (369)
T TIGR02092 350 NVKIAG 355 (369)
T ss_pred CCEeCC
Confidence 886543
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3e-52 Score=403.97 Aligned_cols=354 Identities=46% Similarity=0.805 Sum_probs=282.8
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||+|+||+|||.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+...|.+.. .....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~---~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG---FIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC---ccCCCE
Confidence 69999999999999999999999999999679999999999999999999999999999999975432110 001124
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
++++..+. ...+.+++||+++++.++.++++. ..++|++++||++++.++.++++.|+++++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 44432221 112345689999999999988531 1368999999999999999999999988888898888776545
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---CCCcc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---~~~~~ 247 (415)
+..||++.+|++++|..+.|||..+.... . ....+++++|+|+|++++|..+++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~------------~--~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIP------------G--MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccc------------c--cccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 67899999988889999999985432100 0 0012479999999999998666654321 23456
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCcccc-CccCCCeee-cCCccccceEC
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~i-~~~~i~~~~ig 325 (415)
..++++.+++++++++|.++++|.||+|+++|++|+++++++.+....+...+.+.+. ..+.+++++ +++.+.+++||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 6789999999999999999999999999999999999999876433333333444332 345667777 56678899999
Q ss_pred CCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 326 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 326 ~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
++|+|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++|+|++|+||++++|++++..
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999966899999999999999999999999999 89999999999999999999998754
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-53 Score=403.90 Aligned_cols=311 Identities=28% Similarity=0.419 Sum_probs=248.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
+|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|+++|+++++++++|..+++.+|+.+.+.++..
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~----- 74 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVR----- 74 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCc-----
Confidence 58999999999999999999999999999999 999999999999999999999999999999999765322211
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+.++.... ++||+++|+.+.+++. .++|++++||++++.|+.+++++|+++++.+|+......
T Consensus 75 --I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 75 --ITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred --eEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 33322222 3799999999999885 389999999999999999999999999888899888887
Q ss_pred CCcCCcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
++ ..||++..+++ ++|.+|.|||..... .++++++|+|+|++++|+ .++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 73 78999998744 599999999954110 247899999999999997 3332 23456
Q ss_pred ccccchhhhcccce-EEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCC--------CCccccCccCCCeee-cC
Q 014953 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPPSKI-DD 316 (415)
Q Consensus 247 ~~~~~l~~l~~~~~-i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~--------~~~~~~~~i~~~~~i-~~ 316 (415)
|..++++.+++.++ +++|.++|+|+||++|++|.+|++.+++......+.... ..+...+.+++++.+ .+
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC
Confidence 77789999999887 999999999999999999999999998644221110000 222333444444444 34
Q ss_pred Cccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccc
Q 014953 317 SKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365 (415)
Q Consensus 317 ~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~ 365 (415)
+.|. +++||+||+|+ ++.|++|+|+++|.|++++.|.+|||+.++.|++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 4444 58888888888 5788888999999998888888898888876666
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.2e-47 Score=370.31 Aligned_cols=326 Identities=21% Similarity=0.321 Sum_probs=249.4
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEccc-ChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|++++++ +.+++.+|+... ..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~------~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG------ERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc------cccCce
Confidence 699999999999999999999999999999 999999999999999999999999 888999988542 223322
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++. +. +..|++++++.++.++. .++|++++||++++.++.+++++|.++++++|+++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22221 21 13699999999999885 3689999999999999999999999999999999888765
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~ 246 (415)
+..|+++..+++++|.++.|||..+. +++.++|+|+|++.+++ .++...+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 57799888876678999999987542 36789999999997775 44433221 223
Q ss_pred ccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCccccceE
Q 014953 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSII 324 (415)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~i 324 (415)
...++++.++++ .++++|.++|||.||+||+||++||+.++.+... .+. .+.+.+.+.+++++ +++.|.+++|
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i 268 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVI 268 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEE
Confidence 346788888866 4799999999999999999999999999975321 111 13445556666777 6666666666
Q ss_pred CCCCEEc-ceEEeeeEEccCcEECCCcEEe-----ecEEeCCccccchhHHHhhhhCCCcceEeCCC-CEEeeeEECCCe
Q 014953 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLK-----DTMMLGADFYETDAEVASLLAEGRVPVGIGEN-TKIKYEQLKPIC 397 (415)
Q Consensus 325 g~~~~I~-~~~i~~svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~i~~~~i~~~~ 397 (415)
+++|.|+ +|.|.+|+|+++|+||++|+|. +|+|+++ +.|+.+ +++.++++++++
T Consensus 269 ~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~ 329 (353)
T TIGR01208 269 RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKV 329 (353)
T ss_pred ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCC
Confidence 5556666 4555566666666666666654 6666666 677776 377778888888
Q ss_pred EEcCCcccC
Q 014953 398 HIVETKYDS 406 (415)
Q Consensus 398 ~i~~~~~~~ 406 (415)
+|+++++..
T Consensus 330 ~i~~~~~~~ 338 (353)
T TIGR01208 330 RIKGNRRRP 338 (353)
T ss_pred EECCCcccc
Confidence 888887654
No 12
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-46 Score=327.46 Aligned_cols=351 Identities=23% Similarity=0.308 Sum_probs=257.4
Q ss_pred cceEEEEEcCC--CCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG--~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
++.+||||.|| +|||||||+.+.||||+|++|+ |||+|-++++.+ .|..+|+++.-|..+.+.+|+..-. .
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~-----~ 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ-----Q 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH-----h
Confidence 46799999999 6999999999999999999999 999999999998 6899999999999888888876432 1
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+|.. .+.++..+ .++||++.|++.++.|-. ...+.|+|+++|+.++++|.+|++.|+..+..+|++.
T Consensus 75 e~~~-pvrYL~E~---------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFKV-PVRYLRED---------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hccc-chhhhccC---------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 2221 13444332 248999999999987743 2368999999999999999999999999999999999
Q ss_pred EEcCCCcCCcccEEEEC-CCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh---h
Q 014953 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---W 239 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~---~ 239 (415)
++...+++.+||.+..| ..|+|.++.|||.... ++.++||+|+|++++|+.+-+ .
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHH
Confidence 99998888999999998 4699999999998653 588999999999998864321 1
Q ss_pred h---------C----C---CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCC---CCCcc-C--
Q 014953 240 R---------F----P---TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP---MFSFY-D-- 297 (415)
Q Consensus 240 ~---------~----~---~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~---~~~~~-~-- 297 (415)
. . + +.-.+.+|+++.|+..+++++|..+++|..|.|+..-+.||+.+|+... ...+. .
T Consensus 201 ~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg 280 (407)
T KOG1460|consen 201 RQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG 280 (407)
T ss_pred HHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC
Confidence 0 0 0 1123457899999999999999999999999999999999999987331 11111 1
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH----
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA---- 370 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~---- 370 (415)
..+.+...+.|+|.+.+ ++++|+ |+.||++++|| ++.+.+|+|-++|.|.+++.+-+||++-++.|+.=+++.
T Consensus 281 t~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 281 TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred CCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 11234445555555555 455554 56666666666 566666666666666666666666666664333211111
Q ss_pred -----------hhhhCCCcceEeCCCCEEeeeEECCCeEEc
Q 014953 371 -----------SLLAEGRVPVGIGENTKIKYEQLKPICHIV 400 (415)
Q Consensus 371 -----------~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~ 400 (415)
+++|+. |.+++.|.+.+|++-++..+.
T Consensus 361 ~~s~~~~~~a~Tilga~---v~v~dev~v~~s~vlp~k~l~ 398 (407)
T KOG1460|consen 361 EPSPNLPFAALTILGAD---VSVEDEVIVLNSIVLPNKELN 398 (407)
T ss_pred ccCCCCCcceeEEeccc---ceecceeEEeeeeEecCCccc
Confidence 222333 555666666666666655444
No 13
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-45 Score=349.85 Aligned_cols=376 Identities=16% Similarity=0.263 Sum_probs=263.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
..+++||+||..+-+||+|+|..+|++|||++|. |||+|+|++|.++|+++|+|+++.+..++.+|+.++. +... +
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~~--~ 97 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYLP--M 97 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-cccc--c
Confidence 4679999999999999999999999999999999 9999999999999999999999999999999998742 1111 2
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc-----CCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~-----~~~~t 160 (415)
+...+.|... .+...||++|..-+. +...++|++++||++.+.+|..++++|+++ ++.||
T Consensus 98 ~~~v~ti~s~----------~~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 98 SFIVVTICSG----------ESRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred cceEEEEcCC----------CcCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 2111233222 135889999887532 233699999999999999999999999753 56799
Q ss_pred EEEEEcCCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 161 ISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
|++.+........-.++.+|. +.++..|.+... ....++++.+++... .....+.++.+++|.+||++++. ++.+
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~s-LF~d 238 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLS-LFTD 238 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHH-Hhhh
Confidence 999887421123344566665 578888876222 222455666666544 45567889999999999999995 6666
Q ss_pred hCCC--CCcccccchhhhcccceEEEEEeCc--eEEecCCHHHHHHHHHhhcCCC-----CCCCccCCCCCccc--cCcc
Q 014953 240 RFPT--ANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-----PMFSFYDATKPIYT--SRRN 308 (415)
Q Consensus 240 ~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g--~~~di~t~~~y~~an~~~l~~~-----~~~~~~~~~~~~~~--~~~i 308 (415)
.|+. ..+|...+|..-+-+.+|+++..+. |..++.+++.|...++++++|| |...+.+....-.. +-.-
T Consensus 239 NFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk 318 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYK 318 (673)
T ss_pred cccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeeccccccc
Confidence 5543 5677888888778899999999875 9999999999999999999999 22222211000000 0011
Q ss_pred CCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCC
Q 014953 309 LPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGE 384 (415)
Q Consensus 309 ~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~ 384 (415)
++.+.+ .++.+. +++||.++.|| ++.|.||+||.||.||.+++|.+|+||.+++|+.+|++. +++.++ |.|++
T Consensus 319 ~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---v~i~~ 395 (673)
T KOG1461|consen 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---VKIGE 395 (673)
T ss_pred CccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC---cEeCC
Confidence 222223 233332 55566666666 466666666666666666666666666665555554443 244444 78888
Q ss_pred CCEEe-eeEECCCeEEcCCcccCc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
||++. +||||.++++|++...-+
T Consensus 396 ~~~l~~g~vl~~~VVv~~~~~l~~ 419 (673)
T KOG1461|consen 396 GAILKPGSVLGFGVVVGRNFVLPK 419 (673)
T ss_pred CcccCCCcEEeeeeEeCCCccccc
Confidence 88886 888888888888775443
No 14
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-44 Score=326.10 Aligned_cols=363 Identities=18% Similarity=0.263 Sum_probs=253.8
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccC-hhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~-~~~i~~~l~~~~~~~~~~ 83 (415)
.|.+++|||+|||.||||-.+++..|||||||+|+ |||+|.|++|.++|+++|+|++... ...++..+...++..
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~--- 81 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLK--- 81 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccc---
Confidence 57889999999999999999999999999999999 9999999999999999999999874 356666665544221
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
.....+++-...+. ..||+++|+.....++ .+||+++.||.+++.++..++++++..++.+.++.
T Consensus 82 -~~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 82 -KRPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred -ccccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 11112333222222 2699999999998886 47999999999999999999999998877655544
Q ss_pred EEcCC---------CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 164 LPMDD---------SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
..... +....+.++-++++++=..|..... .....+.+..++++..|+.. ..+.|.++++|+|+.++++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID 224 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH
Confidence 32211 1112344555655543344443322 22345677778887776643 3578999999999999996
Q ss_pred HHHhhhCCCCCcccccchhhhccc---------------------------------ceEEEEEeC--ceEEecCCHHHH
Q 014953 235 NLLRWRFPTANDFGSEIIPASANE---------------------------------QFLKAYLFN--DYWEDIGTIRSF 279 (415)
Q Consensus 235 ~~l~~~~~~~~~~~~~~l~~l~~~---------------------------------~~i~~~~~~--g~~~di~t~~~y 279 (415)
++.+. +...+|..+++|.+++. .++++|... .-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 44432 23456777777777642 234555543 568899999999
Q ss_pred HHHHH--hhcCCCCCCCccC----CCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcE
Q 014953 280 FEANL--ALTAHPPMFSFYD----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVH 351 (415)
Q Consensus 280 ~~an~--~~l~~~~~~~~~~----~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~ 351 (415)
+++|+ .+....+...+.. ..+.+...+.+++++.| +++.|+.|+||.||.|| .++|.+|+|++|++||+|+.
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~ 382 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVN 382 (433)
T ss_pred HhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcc
Confidence 99994 3332222211111 11222334555666666 46666677777777777 47777777777777777777
Q ss_pred EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccCccc
Q 014953 352 LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDSSTI 409 (415)
Q Consensus 352 i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~ 409 (415)
|.||||+.+ ++||++|.+.||+||++-+|.++.+..++.
T Consensus 383 IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev 421 (433)
T KOG1462|consen 383 IENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGEV 421 (433)
T ss_pred eecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccccE
Confidence 777777777 899999999999999999999777655443
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.1e-43 Score=350.08 Aligned_cols=349 Identities=20% Similarity=0.231 Sum_probs=262.5
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 5678999999999999984 689999999999 9999999999999999999999999888888875311
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
.+.++...+ .+|++++++.+++++++. .++|++++||. +.+.++.++++.|.+.+++++++.
T Consensus 69 ---~i~~~~~~~---------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 69 ---DVSFALQEE---------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ---ceEEEecCC---------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 122222111 269999999999998531 36899999998 446678999999988888888888
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+.++ +..|+.+.+|++++|..+.|||..... + ..++++++|+|+|++++|.+.++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPE---------------E--RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChh---------------H--hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77655 467999888888999999998743210 0 0136789999999999876666543221
Q ss_pred ---CCcccccchhhhcccc-eEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCCC-CccccCccCC
Q 014953 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (415)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~~-~~~~~~~i~~ 310 (415)
...+..++++.+++++ ++++|+++++ |.|+++|++|++|++.++... .....+++.. .+..++.+++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 2234568899888764 7999999987 999999999999988665431 1222445543 3555666667
Q ss_pred Ceee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCC
Q 014953 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGEN 385 (415)
Q Consensus 311 ~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~ 385 (415)
++.| +++.|. +++||++|+|+ +++|.+|+||++|+|+++++|.++++++++.|++++.+. +.++++ +.||++
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~ 350 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNF 350 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCC
Confidence 7777 666664 78999999998 799999999999999999999999999998777665543 234444 444443
Q ss_pred C-----------EEe------eeEECCCeEEcCCcc
Q 014953 386 T-----------KIK------YEQLKPICHIVETKY 404 (415)
Q Consensus 386 ~-----------~i~------~~~i~~~~~i~~~~~ 404 (415)
+ .+. +++||+++.|++++.
T Consensus 351 ~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~ 386 (459)
T PRK14355 351 VETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTI 386 (459)
T ss_pred ccccCCEECCCceeeeeccccCCEECCCCEEcccee
Confidence 3 221 346666666666653
No 16
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-43 Score=323.96 Aligned_cols=307 Identities=21% Similarity=0.262 Sum_probs=230.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+++.+||||||.||||+ ++.||.|.|++|+ ||++|+++.+...+.+++.+|+++..+++++.+.+.. ...|
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~~- 71 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVEF- 71 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----CceE-
Confidence 36789999999999998 8999999999999 9999999999999999999999999999998885321 1122
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
+++.. ++||++|++++++++.+. .+.++||++||+ ++..+ |+++++.|...++.++++..
T Consensus 72 -----v~Q~e----------qlGTgHAV~~a~~~l~~~---~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 72 -----VLQEE----------QLGTGHAVLQALPALADD---YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred -----EEecc----------cCChHHHHHhhhhhhhcC---CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 22222 379999999999999321 145899999999 55554 88999999999999999999
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
..++ |..||.+..+++|+|.++.|..+.... +. .-..+++|+|+|+.+.|.++|..... +
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e---------------ek--~I~eiNtGiy~f~~~~L~~~L~~l~n-n 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEE---------------EK--QIKEINTGIYAFDGAALLRALPKLSN-N 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHH---------------Hh--cCcEEeeeEEEEcHHHHHHHHHHhcc-c
Confidence 9988 799999999989999999998775432 11 12578999999999988888877533 2
Q ss_pred Ccccccchhhhcc-----cceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCCCCc-cccCccCC
Q 014953 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATKPI-YTSRRNLP 310 (415)
Q Consensus 245 ~~~~~~~l~~l~~-----~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~~~~-~~~~~i~~ 310 (415)
+.-.+++|++++. +.++.++..+++ ..-+|+...+.++++.+.+|. ..+++++|...+ .....+++
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 3334555655543 578999998865 678999999999988776543 355566665432 23344455
Q ss_pred Ceee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 311 ~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
.+.| +++.++ ++.||++|+|+ +|.|++|.|++++.|-+.+.|.+|.+.++
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC
Confidence 5555 445443 56666666666 56666666666666666666666666666
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-42 Score=345.38 Aligned_cols=351 Identities=20% Similarity=0.217 Sum_probs=256.3
Q ss_pred CCcccccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC
Q 014953 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (415)
Q Consensus 1 ~~~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~ 80 (415)
|.... ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+++...
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---- 71 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS---- 71 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----
Confidence 44444 589999999999999996 589999999999 999999999999999999999999888888877411
Q ss_pred CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCc
Q 014953 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGAD 158 (415)
Q Consensus 81 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~ 158 (415)
+ +.++... ++.|++++++.++.++.. ..++|++++||+ +.+.++.+++++|++++++
T Consensus 72 -~-------i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 72 -G-------VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred -C-------cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 1 2333221 236999999999988752 135799999998 4456699999999999999
Q ss_pred EEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
+|+++.+.++ +..||++.+|++++|.+|.|||..+... ...+++++|+|+|+++.+ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9998888775 5679999999889999999998753210 012468999999997653 2333
Q ss_pred hhC---CCCCcccccchhhhcccc-eEEEEEeCceEEecCCHHHHHHHHHh-hcCCC-------CCCCccCCCCC-cccc
Q 014953 239 WRF---PTANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP-------PMFSFYDATKP-IYTS 305 (415)
Q Consensus 239 ~~~---~~~~~~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y~~an~~-~l~~~-------~~~~~~~~~~~-~~~~ 305 (415)
... .....+..|+++.+++++ ++++|.+.++|..++.-.+|+.+++. +++.. .....++|... +.+.
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 321 112334568888888764 79999999998888888777777754 44322 11222233222 2344
Q ss_pred CccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcce
Q 014953 306 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPV 380 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~ 380 (415)
+.|+.++.| +++.|. ++.||++|+|+ +|.|++|+||++|.|+++++|.++++++++.++.++.+. +.++++ +
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~---~ 347 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEG---V 347 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCC---C
Confidence 555666666 566664 57789999998 688899999999999999999999999998888887664 455555 5
Q ss_pred EeCCCCEE-----------------eeeEECCCeEEcCCcc
Q 014953 381 GIGENTKI-----------------KYEQLKPICHIVETKY 404 (415)
Q Consensus 381 ~Ig~~~~i-----------------~~~~i~~~~~i~~~~~ 404 (415)
.||+++.| .+++||+++.|++++.
T Consensus 348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~ 388 (481)
T PRK14358 348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTI 388 (481)
T ss_pred EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEE
Confidence 55554332 3466666666666653
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.4e-42 Score=341.94 Aligned_cols=238 Identities=18% Similarity=0.244 Sum_probs=184.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++.... .
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~----- 70 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P----- 70 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C-----
Confidence 467899999999999986 589999999999 9999999999999999999999998888888775311 0
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
. +.++... +..|++++++.++.++... ..++|++++||+ ++ ..++.++++.|++.+++++++..
T Consensus 71 -~-~~~~~~~---------~~~Gt~~si~~al~~l~~~---~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 71 -E-VDIAVQD---------EQPGTGHAVQCALEALPAD---FDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -c-cEEEeCC---------CCCCcHHHHHHHHHHhccC---CCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 1 2222111 2369999999999888421 136799999998 44 45699999999888888887777
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
+..+ +..|+.+..|++++|.++.|||...... ...+++++|+|+|++++|..+++.....
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 6655 5779998888889999999998854210 0135689999999999997776653321
Q ss_pred --CCcccccchhhhcccc-eEEEEEeCceEEecCCHHHH------HHHHHhhcCC
Q 014953 244 --ANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSF------FEANLALTAH 289 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y------~~an~~~l~~ 289 (415)
...+..|+++.+++.+ ++++|++++||.|++++++| ..+|+.++..
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEA 252 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 2344578898888764 89999999999999999888 5566655543
No 19
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.2e-42 Score=299.35 Aligned_cols=234 Identities=26% Similarity=0.453 Sum_probs=197.4
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|||||||||.||||+|+|...||.|+||.+| |||+|.++.|..+||++|.|+++++.....+++ +++|.+|+..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~gv~ 74 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFGVD 74 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccCcc
Confidence 7999999999999999999999999999999 999999999999999999999999664433333 4677778754
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.+..|.. +.|.++|+..+.+|+. +++|+++.||.++..++.++++.+.+++.++++++.++++
T Consensus 75 ---itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 75 ---ITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred ---eEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 22233432 4699999999999997 4899999999977779999999999988899999999997
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-Cc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A-ND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~-~~ 246 (415)
|++||++.+|++++++.+.|||..+. ||++-+|+|+|++++|. .++...|. . +.
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 89999999998999999999999875 68999999999999996 55554343 2 22
Q ss_pred ccccchhhhcccc-eEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 247 FGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 247 ~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
-..|+++.+++++ .+......|+|.|.||+++|++|++.++.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 2468888888765 45566677899999999999999998875
No 20
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-40 Score=329.32 Aligned_cols=353 Identities=20% Similarity=0.246 Sum_probs=245.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++++|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++ ++++.|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 457899999999999986 799999999999 9999999999986 78999999999999998886431 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++..... .+.||+++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~---~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP---K-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc---C-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 333322111 13699999987421 1 47899999998432 1245555666677888888777
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---T 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---~ 243 (415)
++ +..|+.+..+ +|++..+.|++..... + ...++.++|+|+|++++|..+++.... .
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5668887775 6899999998754221 0 013678999999999999766554221 1
Q ss_pred CCcccccchhhhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhhcCCCC-------------CCCccCCCCCccccCcc
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~~~-------------~~~~~~~~~~~~~~~~i 308 (415)
...+..|+++.+++. .++.++..+ ++|.||++|+||++|+..+..+.. ...++.++..+...+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223456778877765 689999987 589999999999999876654311 11123344445555566
Q ss_pred CCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCcc-------------------------
Q 014953 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF------------------------- 362 (415)
Q Consensus 309 ~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~------------------------- 362 (415)
++++.| +++.+++++||++|.|+++.+++|+||++|+|+++++|.+|.|++++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~ 348 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEG 348 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCC
Confidence 666666 566667777788887776667777777777777777776666665553
Q ss_pred --ccchhHHH---------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 363 --YETDAEVA---------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 363 --~~~~~~~~---------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.++.+. +.++++ |.||.||.|. ++.||+++.|++++.+.+.+..++.
T Consensus 349 ~~ig~~~~~~~~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~ 409 (430)
T PRK14359 349 TNIGAGTITCNYDGKKKHKTIIGKN---VFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSL 409 (430)
T ss_pred CEECCCceEccccCccCcCCEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcE
Confidence 33332211 233444 5666666665 6778888888888877777666553
No 21
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=5.2e-41 Score=335.24 Aligned_cols=352 Identities=20% Similarity=0.236 Sum_probs=242.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++++++++.+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~---------~~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN---------RD-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC---------CC--
Confidence 7899999999999996 699999999999 99999999999999999999999998888877743 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++...+ +.|++++++.++++++. .++|++++||. ++ ..++..++++|.+. .+++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221111 25999999999998853 36899999998 33 45689999988664 366666666
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..|++++|..+.|||...... ...+++++|+|+|++++|..+++.....
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 5668988888888999999987643210 0125788999999999976666553221
Q ss_pred CCcccccchhhhccc-ceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCC-------------------Cc
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMF-------------------SF 295 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~-------------------~~ 295 (415)
...+..++++.+++. .++++|+++++ |.++++|++|..++..+..+. +.. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 223346788888876 47999999988 999999999988876543211 000 11
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-h
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA-S 371 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~-~ 371 (415)
+++.+.+...+.+++++.| +++.|.++.||++|+|+ ++.+.+|+||++|.||++++|. +++|+++++|+.++.+. +
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 2222233333334444444 45555667777777777 5666777777777777766666 36665555555443321 1
Q ss_pred ------------------------------------------hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 372 ------------------------------------------LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 372 ------------------------------------------~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.++++ |.||.++.|. ++.||+++.|++++.+.+.
T Consensus 350 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~ 426 (451)
T TIGR01173 350 RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDG---VFIGSNTQLVAPVKVGDGATIAAGSTVTKD 426 (451)
T ss_pred EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCC---cEECCCCEEECCcEECCCCEEccCCEECcc
Confidence 11222 3444444444 5677777777777777777
Q ss_pred cccccc
Q 014953 409 ISRFSL 414 (415)
Q Consensus 409 ~~~~~~ 414 (415)
+-++++
T Consensus 427 v~~~~~ 432 (451)
T TIGR01173 427 VPEGAL 432 (451)
T ss_pred CCCCcE
Confidence 776654
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.6e-41 Score=332.95 Aligned_cols=309 Identities=18% Similarity=0.235 Sum_probs=217.5
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++... .
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 457999999999999998 4699999999999 999999999999999999999999888888776421 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+.++.... ..|++++++.++.++.+ .++|++++||. +.+.++.+++++|.+.+ ++++.
T Consensus 71 ----~~~i~~~~---------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVLQAE---------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEECCC---------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221111 26999999999988753 47899999998 45667899998886544 45565
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~- 242 (415)
.+.++ +..||++.. ++++|.+|.|||...... ..++++++|+|+|+++.|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 55554 567998754 578999999998642210 013578999999999988777765432
Q ss_pred --CCCcccccchhhhccc-ceEEEEE------eCce--EEecCCHHHHHHHHH--hhcC-C----CCC------------
Q 014953 243 --TANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTA-H----PPM------------ 292 (415)
Q Consensus 243 --~~~~~~~~~l~~l~~~-~~i~~~~------~~g~--~~di~t~~~y~~an~--~~l~-~----~~~------------ 292 (415)
....+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+ .++. . .+.
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 1334567899998876 5899986 4566 788999999999984 2222 1 111
Q ss_pred CCccCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccch
Q 014953 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETD 366 (415)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~ 366 (415)
-..+++.+.+...+.+++++.| +++.|+++.||++|+|+ ++.+++|+||++|+||+++.|. ++.++++++|+..
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~ 347 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNF 347 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccc
Confidence 0122333334444455555555 55666677777777776 5666677777777777666665 4555555444333
No 23
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4e-40 Score=328.91 Aligned_cols=340 Identities=17% Similarity=0.206 Sum_probs=241.4
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|.+.+++++++++++..+.+.+++...
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 5889999999999997 5799999999999 999999999999999999999999888877665321
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.++++.... +.||+++++.++++++.. ..++|++++||+ ++ ..++.++++.|. +++++++..+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTAA---GLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhhc---CCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 022222111 269999999999988531 147899999998 44 455889998875 5677888877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
.++ +..|+.+.. ++|+|..+.|||+...... ...++++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 766 567998876 5789999999886432100 0013678999999999998766654321
Q ss_pred CCCcccccchhhhccc-ceEEEEEeCc--eEEecCCHHHHHHHHHhhcCCCCCCCccCCC--------CCccccCccCCC
Q 014953 243 TANDFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPP 311 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~g--~~~di~t~~~y~~an~~~l~~~~~~~~~~~~--------~~~~~~~~i~~~ 311 (415)
....+..++++.+++. .++.++.+.+ +|.+|+||+||.+|+..+..+.. ..++... ..+.+.+.+.++
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~ 275 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPG 275 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCC
Confidence 1223456778777654 5799999866 57999999999999877764321 1111111 223334445555
Q ss_pred eee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCC
Q 014953 312 SKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENT 386 (415)
Q Consensus 312 ~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~ 386 (415)
+.+ .++.+ .++.||++|.|+ ++.|++|+||++|.|++++.|.+++|++++.|++++.+. +.++++ |.||.++
T Consensus 276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~~ig~~~ 352 (456)
T PRK14356 276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---ARVGNFV 352 (456)
T ss_pred CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---CEecCCc
Confidence 555 33444 267888888888 688888888888888888888888888888888777663 455666 5666665
Q ss_pred EEeeeEECCCeEE
Q 014953 387 KIKYEQLKPICHI 399 (415)
Q Consensus 387 ~i~~~~i~~~~~i 399 (415)
.+.+++|++++.+
T Consensus 353 ~i~~~~i~~~~~i 365 (456)
T PRK14356 353 EMKKAVLGKGAKA 365 (456)
T ss_pred eeeeeEecCCcEe
Confidence 5554444444333
No 24
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-39 Score=322.36 Aligned_cols=359 Identities=18% Similarity=0.212 Sum_probs=248.4
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
-|+++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.... .
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~---~--- 71 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA---P--- 71 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC---C---
Confidence 35678999999999999984 589999999999 9999999999999999999999999888888774311 0
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~ 162 (415)
. +.++.... ..|++++++.++.+++.. .++|++++||. +++. ++..+++ |.+.+++++++
T Consensus 72 ---~-~~~~~~~~---------~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 72 ---D-AEIFVQKE---------RLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred ---C-ceEEEcCC---------CCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 1 11211111 269999999999888521 47899999998 5554 4777877 44556777777
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
..+..+ +..|+.+.. ++++|..+.|||...... ...++.++|+|+|+++.|.+++++...
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 567888777 578999999998643210 012578899999999877666665322
Q ss_pred C---CCcccccchhhhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhh---------cCCC----CCCCccCCCC----
Q 014953 243 T---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLAL---------TAHP----PMFSFYDATK---- 300 (415)
Q Consensus 243 ~---~~~~~~~~l~~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~---------l~~~----~~~~~~~~~~---- 300 (415)
. ...+..+.++.+++. .+++++..+ ++|.+|++|+||.+|+..+ +... +...++++.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223456778887765 579999986 5699999999999998633 3210 1111222222
Q ss_pred --CccccCccCCCeee-cCCcc------ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCC---------
Q 014953 301 --PIYTSRRNLPPSKI-DDSKI------VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGA--------- 360 (415)
Q Consensus 301 --~~~~~~~i~~~~~i-~~~~i------~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~--------- 360 (415)
.+.+++.|++++.| +++.| .+++||++|+|+ ++.|. +|+||++|+||+++.+.+++|+++
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 33333333333333 23333 357788888887 57775 788888888888877766555544
Q ss_pred --------ccccchhHH---------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 361 --------DFYETDAEV---------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 361 --------~~~~~~~~~---------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.|+.++.+ .+.|+++ |.||.++.|. ++.||+++.|++++.+.+.+..+++
T Consensus 354 ~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~---~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~ 422 (446)
T PRK14353 354 GDATIGAGANIGAGTITCNYDGFNKHRTEIGAG---AFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDAL 422 (446)
T ss_pred cCcEEcCCcEECCceeeeccccccCCCcEECCC---cEECCCCEEeCCCEECCCCEECCCCEECccCCCCCE
Confidence 334444322 2344555 6777777776 7888888999999988888877764
No 25
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=8.1e-40 Score=304.84 Aligned_cols=244 Identities=18% Similarity=0.275 Sum_probs=189.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~----- 80 (415)
|.+|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|+++|..+++.+|+...+.+.
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 9999999999999999999999999999999986432110
Q ss_pred -----------CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
.+..++. .+.++ .|. +++||++|++++.++++ +++|+|++||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~i~~~--~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGV-TIMNV--RQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCCc-eEEEe--eCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0001111 12222 222 34799999999999985 36899999999987
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE----CCCCC---eEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI----NNEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~----d~~~~---v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.++.+++++|.++++.++++. ..+. .+.+||++.. |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~-~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAK-RMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEE-EcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 589999999987777664443 3332 2689999998 44564 5889999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
..++++++|+|+|++++|. .++...+. ......|+++.+++++++++|.++|+|+|+|+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1247899999999999886 44443221 12224588999999999999999999999999999999998863
No 26
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.3e-39 Score=321.81 Aligned_cols=356 Identities=20% Similarity=0.244 Sum_probs=239.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|+++++++++++.+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 46789999999999998 4699999999999 999999999999999999999999988888776321
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
+.++.... ..|++++++.++.++++. .++|++++||. +...++.+++++|.+.+++.|+++.
T Consensus 67 ---~~~~~~~~---------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQEE---------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcCC---------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11211111 269999999999988531 36799999997 3456689999999888888888877
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
..++ +..|+.+..|++++|..+.|||..... + ...++.++|+|+|+++.|...++.....
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6654 566888888888999999998753110 0 0135789999999998765666543221
Q ss_pred --CCcccccchhhhccc-ceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCC-------CCCcccc
Q 014953 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-------TKPIYTS 305 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~-------~~~~~~~ 305 (415)
...+..++++.+++. .++++|.++|+ |+++++++||..|+..+..+. +..+++++ ...+.++
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122345777777754 57999999876 567789999999886543211 11122222 2222222
Q ss_pred ------------CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-
Q 014953 306 ------------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA- 370 (415)
Q Consensus 306 ------------~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~- 370 (415)
+.++.++.| .++.|.+++||++|+|+++++.+|+||++|.||+++.|. +++|+++++++.++.+.
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 223333333 344444556666666655555566666666666666666 45555555554443321
Q ss_pred ------------------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 371 ------------------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 371 ------------------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
+.++++ +.||.++.+. ++.||+++.|++++.+.+
T Consensus 352 ~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~---~~ig~~s~i~~~~~ig~~~~v~~~~~v~~ 428 (458)
T PRK14354 352 STIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDN---AFIGCNSNLVAPVTVGDNAYIAAGSTITK 428 (458)
T ss_pred eEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCC---cEEccCCEEeCCcEECCCCEECCCCEECC
Confidence 111222 5555566655 677778888888887777
Q ss_pred ccccccc
Q 014953 408 TISRFSL 414 (415)
Q Consensus 408 ~~~~~~~ 414 (415)
.+-++++
T Consensus 429 ~~~~~~~ 435 (458)
T PRK14354 429 DVPEDAL 435 (458)
T ss_pred CCCCCCE
Confidence 7766654
No 27
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-38 Score=317.40 Aligned_cols=302 Identities=20% Similarity=0.235 Sum_probs=207.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.+.+ ++|+|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999984 799999999999 99999999999875 89999999988877777632 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++. +. ..+|++++++.++.+++. .++|++++||. +.+.++.++++.|+++++++|+++.+.
T Consensus 64 -~~~~~--~~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QE-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cC-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 12221 11 136999999999998853 47899999997 556778999999998899999998887
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..+ ++++ .+.|++..+... ...+++++|+|+|++++|.+++++..+.
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 65 5779998887 6788 788876532110 0125789999999999987766643221
Q ss_pred CCcccccchhhhcccceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCC-------ccCCCCCcccc---
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFS-------FYDATKPIYTS--- 305 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~-------~~~~~~~~~~~--- 305 (415)
...+..|+++.+ .++.+|...+| |.+++++++|..+...+..+. .... .+++.+.+..+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 112334666655 35888888888 677789999988765542110 1111 22222233333
Q ss_pred ---------CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEee-cEEeCCccccch
Q 014953 306 ---------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMLGADFYETD 366 (415)
Q Consensus 306 ---------~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~ 366 (415)
+.++++++| +++.+.+|+||++|+|..+.+.+|+|+++|.||++++|.+ ++++++++|+.+
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~ 336 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNF 336 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCc
Confidence 333333444 3444455666777766545556666666666666666643 555555555444
No 28
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.6e-39 Score=299.16 Aligned_cols=246 Identities=18% Similarity=0.270 Sum_probs=192.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~----- 80 (415)
|.+|+|||||||.||||+|+|..+||||+||+|| |||+|+++++.++|+++|+|+++|..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996433110
Q ss_pred -----------CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
....++ +.+....|. .++||++|++.+++++. .++|+|++||.+++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~-------~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQG-------QPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecC-------CcCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 122222232 14799999999999984 36899999999886
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEEC----CCC---CeEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.|+.++++.|.+.+++++++....+ .+.+||++..| +++ +|..+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4799999999888877554443333 47889999986 355 68899999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh-cCC
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 289 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~-l~~ 289 (415)
..++++++|+|+|++++|..+. ...+. ......++++.+++++++++|.++|+|+|||+|++|.+|+.++ +..
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 1247899999999999987553 32221 2234468899999999999999999999999999999999998 543
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1e-38 Score=293.46 Aligned_cols=239 Identities=37% Similarity=0.640 Sum_probs=191.0
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEE-EEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV-YILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I-~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
||||||||.||||+|+|.++||||+|++|++|||+|+|++|.++|++++ +|+++++.+.+.+|+.... .++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGV- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTE-
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------cccc-
Confidence 7999999999999999999999999999998999999999999999995 5555577788999986543 2221
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcE--EEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADI--TISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~--ti~~~~~ 166 (415)
.+.++. +.. ..||++||+.+.+++.... ..++|++++||++++.++.++++.|+++++++ ++...+.
T Consensus 74 ~i~~i~--~~~-------~~Gta~al~~a~~~i~~~~--~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 74 KIEYIV--QPE-------PLGTAGALLQALDFIEEED--DDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp EEEEEE--ESS-------SSCHHHHHHHTHHHHTTSE--E-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred cceeee--ccc-------ccchhHHHHHHHHHhhhcc--ccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 133332 221 2599999999999997510 01349999999999999999999999998844 4444444
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh--hhCCCC
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTA 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~--~~~~~~ 244 (415)
. .++.||++..|++++|.++.|||..+.. ++++++|+|+|++++|..+++ ......
T Consensus 143 ~--~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~ 200 (248)
T PF00483_consen 143 E--DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARG 200 (248)
T ss_dssp S--GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTS
T ss_pred c--ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchh
Confidence 3 4789999999988999999999986531 368999999999999976654 222345
Q ss_pred Ccccccchhhhcccc-eEEEEEeCc--eEEecCCHHHHHHHHHhhcC
Q 014953 245 NDFGSEIIPASANEQ-FLKAYLFND--YWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~~g--~~~di~t~~~y~~an~~~l~ 288 (415)
.++..++++.+++++ .+.++..++ +|.|||||++|++||+.+++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 667789999998876 566888898 79999999999999999875
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.8e-38 Score=287.65 Aligned_cols=232 Identities=26% Similarity=0.417 Sum_probs=194.0
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999999886320 0111
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++...+. ...|++++++.++.+++.. .++|++++||++++.++.+++++|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 233322221 1369999999999988531 3689999999999999999999999999999999987764
Q ss_pred CcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
+..||++.+|+ +++|.++.|||..+. ++++++|+|+|++++|..+ .. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 57899999987 789999999987542 3678999999999999654 32 12344
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
..++++.+++++++.+|+++|+|.||+|+++|++|++.+|
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 5688999999999999999999999999999999998765
No 31
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.9e-38 Score=290.81 Aligned_cols=235 Identities=26% Similarity=0.398 Sum_probs=192.0
Q ss_pred EEEEcCC--CCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 11 aVILAaG--~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
||||||| .||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986421 01111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
.+.++. +. ...||+++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|+++.+.+
T Consensus 75 -~i~~~~--~~-------~~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 -PIRYLQ--EY-------KPLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred -eEEEec--CC-------ccCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 122222 21 1369999999999988531 1368999999999999999999999999999999998875
Q ss_pred CCcCCcccEEEEC-CCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC----
Q 014953 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---- 242 (415)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---- 242 (415)
.+.+..||++.+| ++++|..+.|||..+. ++++++|+|+|++++|..+ ....+
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccc
Confidence 4446889999988 6789999999987432 3689999999999998544 33211
Q ss_pred --------------CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 243 --------------TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 243 --------------~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
...++..++++.+++++++++|.++|||.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11235578999999999999999999999999999999999864
No 32
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.8e-38 Score=311.65 Aligned_cols=353 Identities=18% Similarity=0.237 Sum_probs=238.3
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+. .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~-------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---P-------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---C--------
Confidence 6799999999999985 689999999999 999999999999999999999999888888777431 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++.... +.|++++++.++.++++. .++|++++||. +...++.++++.|++.+++++++..+.
T Consensus 67 ~i~~v~~~~---------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQP---------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeCC---------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332111 259999999998888531 36799999998 455678999999998888888877766
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..|++++|..+.|||...... ..++++++|+|+|+++.|.+++++..+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 55 5669999898889999999998642110 0236889999999999888777654322
Q ss_pred CCcccccchhhhcccceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCC----------------
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDAT---------------- 299 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~---------------- 299 (415)
...+..+.++.+. ++..+.+.++ |..+++++++..+...+.... +...+++++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 1223344555542 3566667765 566999999998876543211 111122221
Q ss_pred ---CCccccCccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH----
Q 014953 300 ---KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA---- 370 (415)
Q Consensus 300 ---~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~---- 370 (415)
..+...+.+++++.| .++.|.+++||++|+|+++.+.+|+||++|.||++++|. +++|++++.|..++.+.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i 351 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQL 351 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEecccc
Confidence 222223334444444 445555556666666654555566666666666666665 36665555555444321
Q ss_pred ---------------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccc
Q 014953 371 ---------------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTIS 410 (415)
Q Consensus 371 ---------------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~ 410 (415)
+.++++ |.||.++.|. ++.||+++.|++++.+.+.|.
T Consensus 352 ~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~---~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~ 428 (450)
T PRK14360 352 GEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDR---SKTGANSVLVAPITLGEDVTVAAGSTITKDVP 428 (450)
T ss_pred CCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCC---eEeCCCCEEeCCcEECCCCEECCCCEECccCC
Confidence 122333 4555555555 677777777777777777777
Q ss_pred cccc
Q 014953 411 RFSL 414 (415)
Q Consensus 411 ~~~~ 414 (415)
+++.
T Consensus 429 ~~~~ 432 (450)
T PRK14360 429 DNSL 432 (450)
T ss_pred CCCE
Confidence 6653
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1.1e-36 Score=283.14 Aligned_cols=235 Identities=23% Similarity=0.391 Sum_probs=187.3
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEccc-ChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~-~~~~i~~~l~~~~~~~~~~~ 84 (415)
|+.|+|||||||.||||+|+|..+||+|+||+|| |||+|+|++|..+|+++|++++.+ ..+.+.+|+.+ +..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~------g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC------ccc
Confidence 5679999999999999999999999999999999 999999999999999999977654 45667777643 334
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccChHHHHHHHHHcCCcEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
|+.. +.+. .|. .+.|+++|+..+.+++. .++|++++||.+ ++.++.++++.|.++++++|+++
T Consensus 74 ~g~~-i~y~--~q~-------~~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQP-------SPDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECC-------CCCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 5432 2222 222 13699999999999985 356888999975 58899999999988888899988
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.++++ +++||++.+|++|+|..+.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCC
Confidence 88765 68999999998899999999997542 478899999999998864 4433222
Q ss_pred --CCcccccchhhhcccceEEE-EEeCce-EEecCCHHHHHHHHHhhc
Q 014953 244 --ANDFGSEIIPASANEQFLKA-YLFNDY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~~~i~~-~~~~g~-~~di~t~~~y~~an~~~l 287 (415)
.+....++++.+++++++.+ +...|+ |.|+||+++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 11123688888888777654 456784 999999999999998775
No 34
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=8e-37 Score=280.80 Aligned_cols=234 Identities=26% Similarity=0.355 Sum_probs=190.3
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC--C
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--D 87 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~--~ 87 (415)
+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+.+....+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986422111111110 0
Q ss_pred c------------eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc
Q 014953 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (415)
Q Consensus 88 ~------------~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~ 155 (415)
. .+.+.. + ..++||+++++.+++++. .++|++++||++++.|+.+++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 1 123799999999999885 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHH
Q 014953 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (415)
Q Consensus 156 ~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~ 235 (415)
++++|++..+ + +..||++.+|+ ++|+.|.|||... ++++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999887653 2 57799999985 6999999998542 25789999999999984
Q ss_pred HHhhhCCCCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
.++.. ..++..++++.+++++++++|.++|||.||+|+++|.+|+..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55432 23567799999999999999999999999999999999999887653
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.3e-36 Score=277.82 Aligned_cols=231 Identities=26% Similarity=0.392 Sum_probs=186.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccC-hhHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.. +..|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~~ 73 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLGI 73 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccCc
Confidence 7899999999999999999999999999999 9999999999999999999998765 4678888753 223432
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+....+. ...|++++++.++++++ .++|+|++||. +.+.++.+++++|.++++++|+++.+.
T Consensus 74 ---~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 74 ---RITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred ---eEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22222221 13699999999999885 37899999997 456679999999998888899988887
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--A 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~ 244 (415)
++ ++.||++.+|++|+|..+.|||..+. ++++++|+|+|++++|+ .++...+. .
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 57899999998899999999986542 35789999999999885 55543221 1
Q ss_pred CcccccchhhhcccceEEEEEeC--ceEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~--g~~~di~t~~~y~~an~~~ 286 (415)
.....++++.+++++++.++.++ |+|.|||||++|++||+.+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 22335888999888888888776 9999999999999999865
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=3.4e-36 Score=279.55 Aligned_cols=231 Identities=25% Similarity=0.425 Sum_probs=185.5
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcc-cChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+|||||||.||||+|+|..+||+|+||+|| |||+|+|++|..+|+++|+|+++ +..+.+.+++. ++..|+..
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g~~ 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWGVN 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccCce
Confidence 689999999999999999999999999999 99999999999999999998875 45567777664 33345432
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+....|. .+.||++|++.+.+++. .++|+++.||. +++.++.++++.|.+.++++|+++.+++
T Consensus 74 ---i~~~~q~-------~~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 74 ---LSYAVQP-------SPDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred ---EEEEEcc-------CCCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2222232 13799999999999985 36788999997 5678899999999888888999988887
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-C
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A-N 245 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~-~ 245 (415)
+ +++||++..|++|+|..+.|||..+. ++++++|+|+|++++++ .++...+. . .
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 6 67899999998899999999997542 46899999999999875 44443221 1 2
Q ss_pred cccccchhhhcccceEEEEEe-Cce-EEecCCHHHHHHHHHhhc
Q 014953 246 DFGSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~-~g~-~~di~t~~~y~~an~~~l 287 (415)
....++++.+++++++.++.+ .|+ |.|+||+++|++|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 233588888888877766665 676 999999999999998664
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=7.6e-36 Score=279.37 Aligned_cols=248 Identities=21% Similarity=0.328 Sum_probs=193.2
Q ss_pred cccccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCC
Q 014953 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG 82 (415)
Q Consensus 3 ~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~ 82 (415)
.-+.+-|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+...+.++..
T Consensus 3 ~~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 81 (302)
T PRK13389 3 AINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAM 81 (302)
T ss_pred cccccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhh
Confidence 3345569999999999999999999999999999999 999999999999999999999999999999999643211100
Q ss_pred ------cccCCc-------eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 83 ------VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 83 ------~~~~~~-------~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
..+..+ ...+....| ..+.||++|++.+.+++. .++|+|++||++++
T Consensus 82 l~~~~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~ 148 (302)
T PRK13389 82 LEKRVKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_pred hhhhhhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccc
Confidence 000000 011111112 124799999999998874 37899999999874
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC-------CCCeEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.++.+++++|.+.+++ |+++.+.++ +..||++..|+ +++|..+.|||.....
T Consensus 149 ~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~----------------- 208 (302)
T PRK13389 149 QDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_pred cccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-----------------
Confidence 6899999999888876 677777654 67899998863 3579999999974321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCC--CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFP--TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~--~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.++++++|+|+|++++|. .++...+ ....+..|+++.+++++++++|.++|+|+|||+|++|.+|+.++.
T Consensus 209 --~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred --CccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 136899999999999984 5554322 123456789999999899999999999999999999999999874
No 38
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=8.7e-36 Score=276.86 Aligned_cols=243 Identities=23% Similarity=0.300 Sum_probs=187.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----CCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (415)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred cc--------C-CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc---ChHHHHHH
Q 014953 84 TF--------G-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQN 151 (415)
Q Consensus 84 ~~--------~-~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~ 151 (415)
.+ . ...+.+. .+. +++||+++++.++.+++ .++|+|++||.++.. ++.++++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~--~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~ 144 (267)
T cd02541 80 TDLLEEVRIISDLANIHYV--RQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEA 144 (267)
T ss_pred HHHhhhhhcccCCceEEEE--EcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHH
Confidence 00 0 0012222 121 23799999999999885 378999999997754 49999999
Q ss_pred HHHcCCcEEEEEEEcCCCcCCcccEEEECC----CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 152 HRQSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 152 h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
|++.+++ ++++...+.+.+..||++.+|+ +++|.++.|||..... .++++++|+|+
T Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi 204 (267)
T cd02541 145 YEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYV 204 (267)
T ss_pred HHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEE
Confidence 9887765 4555555544467899999985 2489999999864221 13678999999
Q ss_pred EeHHHHHHHHhhhCC-CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 228 FKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 228 ~~~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
|++++|..+.+.... ....+..++++.+++++++++|.++|+|.||+|+++|++||+++.
T Consensus 205 ~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 205 LTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred cCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999988655331111 122345688999998889999999999999999999999999874
No 39
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=1.9e-35 Score=272.12 Aligned_cols=243 Identities=22% Similarity=0.334 Sum_probs=190.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC--Cc
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DG 88 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~--~~ 88 (415)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++.+.++|+++|+|+++|..+++.+|+.+....+....+. ..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999987643211111111 00
Q ss_pred eEEEecCccCC---CCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 89 CVEVLAATQTP---GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 89 ~v~i~~~~~~~---~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.+.+....... ....+....||+++++.+++++.+ .++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 000001125899999999998852 2789999999999999999999999999999987763
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
....|+++.+|++|+|..+.|||.... .++++|+|+++++++..+ +.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~~----------------------~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGDG----------------------GWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCCC----------------------ceEEEEEEEECHHHHHhh-ccc---cc
Confidence 146789999998899999999986531 468899999999998543 332 33
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
++..++++.+++++++++|.++|+|.+|+|+++|.+|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 55678999999999999999999999999999999999877543
No 40
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=2e-35 Score=273.36 Aligned_cols=240 Identities=20% Similarity=0.268 Sum_probs=183.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----CCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (415)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccC-------CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc---ChHHHHHHHH
Q 014953 84 TFG-------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (415)
Q Consensus 84 ~~~-------~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~h~ 153 (415)
.+. .....+....+. +..||+++++.+++++. .++|+|++||.++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 000111111121 23699999999999884 478999999997654 6999999999
Q ss_pred HcCCcEEEEEEEcCCCcCCcccEEEECC----CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEe
Q 014953 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (415)
Q Consensus 154 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~ 229 (415)
++++++ +++...+.+.+.+||++.+|. +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555555544468899998862 3699999999853211 1367899999999
Q ss_pred HHHHHHHHhhhCCC-CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHH
Q 014953 230 KEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (415)
Q Consensus 230 ~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~a 282 (415)
+++|..+.+..... ......++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887654322111 123345788999988999999999999999999999875
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.7e-35 Score=265.92 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=180.4
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... .|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCC---
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 122
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHH--HcCCcEEEEEEEcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~--~~~~~~ti~~~~~~ 167 (415)
+.+....+.. ...|++++++.++.++. .++|++++||++++.++.+++++|. ..++.+++...+.+
T Consensus 70 ~~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 2222222210 13699999999999885 3789999999999999999999998 45666777666654
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
. ...||.+.+|++++|..+.++|.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 578899999888999999887642 468999999999998754322 223
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHH
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~a 282 (415)
..++++.+++++++.+|.++|+|.||+|+++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 46889999988999999999999999999999875
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.5e-34 Score=263.73 Aligned_cols=232 Identities=26% Similarity=0.406 Sum_probs=189.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.... .|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7899999999999999999999999999999 9999999999999999999999998899998886432 22211
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++. +. .+.|++++++.++.++. .++|++++||.+++.++.++++.|.++++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22322 11 13699999999998885 3789999999999999999999999998999988887765
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~ 246 (415)
+..|+++.+|+ ++|..+.|||..+. +.+.++|+|+|+++++..+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56789888874 59999999986432 2578999999999998644 332111 122
Q ss_pred ccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
...++++.+++. .++.+|+++++|.||+|++||.+||+.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 345788888865 579999999999999999999999999886
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.2e-33 Score=255.52 Aligned_cols=223 Identities=28% Similarity=0.485 Sum_probs=183.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++...+ .++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCce-E
Confidence 69999999999999999999999999999 9999999999999999999999999888888886422 12211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.+... +. ..|++++++.++.++. .++|++++||++++.++.++++.|++.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 22211 11 2699999999998874 4789999999999999999999998888888888887654
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
...|+.+.+|++|+|..+.+||.... +++.++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 46789888988899999999876431 3678999999999998644221 2345668
Q ss_pred chhhhcccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 251 ~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
+++.++.++++.+|+++++|.||+|++||..|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 899989878999999999999999999999883
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=5.4e-33 Score=250.17 Aligned_cols=217 Identities=33% Similarity=0.587 Sum_probs=181.0
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888988886432 12211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++. +. ...|++++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.+.
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2222 11 12699999999998873 5899999999999999999999999999999999887763
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
+.+|+.+.+|++++|..+.|||.... ..++++|+|+|++++++ .++.......++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 67899999998899999999987542 25789999999999885 555432233566778
Q ss_pred chhhhcccceEEEEEeCceEEecC
Q 014953 251 IIPASANEQFLKAYLFNDYWEDIG 274 (415)
Q Consensus 251 ~l~~l~~~~~i~~~~~~g~~~di~ 274 (415)
+++.++++.++++|+++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999889999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.2e-32 Score=246.74 Aligned_cols=219 Identities=25% Similarity=0.472 Sum_probs=176.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.. .|+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~------~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGS------KFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcc------ccCcc-E
Confidence 69999999999999999999999999999 9999999999999999999999999888888875421 23211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++. +. .+.|+++++..+.+.. .++|+|++||.+++.++.++++.|+..++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2221 11 1369999998776544 4789999999999999999999999988888888877543
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
...|+++..|+ ++|..+.|||... .++++|+|+|+++++..+ ++ .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 35689888875 8999999987542 468899999999998643 22 11122457
Q ss_pred chhhhccc-ceEEEEEeCceEEecCCHHHHHHHH
Q 014953 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 251 ~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
+++.+++. .++.+|+++|+|.||+|+++|.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 78888765 5699999999999999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.1e-33 Score=244.14 Aligned_cols=250 Identities=22% Similarity=0.311 Sum_probs=201.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCC----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS---- 81 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~---- 81 (415)
++-+||||+|||.||||.|.|...||-||||-+| |+|+|+++.+.++||++|++|++..+..+.+|++.++.++.
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4568999999999999999999999999999999 99999999999999999999999999999999876653321
Q ss_pred -Cc-cc----C--CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC---hHHHHH
Q 014953 82 -GV-TF----G--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQ 150 (415)
Q Consensus 82 -~~-~~----~--~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~---l~~~l~ 150 (415)
++ +. . ...+.+.+..|. .+.|.|+|+++|..++. +++|.|+.+|.++... +.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 11 00 0 112333333343 25799999999999997 4899999999987753 788999
Q ss_pred HHHHcCCcEEEEEEEcCCCcCCcccEEE----ECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeE
Q 014953 151 NHRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (415)
Q Consensus 151 ~h~~~~~~~ti~~~~~~~~~~~~~g~v~----~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 225 (415)
.+.+.+.. ++.+.+++.+..+.||++. .+.+ .+|..+.|||..... .|++.-.|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 88887764 6777788776789999997 3333 489999999987653 368999999
Q ss_pred EEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 226 YLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 226 yi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
|+++|++|. .|++..+. .+-...|.+..+++...+++|.+.|..+|+|++..|.+|+.++..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999996 66664332 23345688888999999999999999999999999999999887554
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3.4e-32 Score=244.65 Aligned_cols=205 Identities=19% Similarity=0.317 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
++|||||||.|+||+|||.++||||+||+|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+...++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 5899999999999999999999999999999 99999999999999999999999999999999976432111 11001
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc-----CCcEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~-----~~~~ti 161 (415)
.+.++... .+.|++++++... ..+ .++|++++||++++.|+.+++++|+++ ++++|+
T Consensus 78 ~i~~~~~~---------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSE---------DCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCC---------CcCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 13332211 1358888886542 233 368999999999999999999999984 788999
Q ss_pred EEEEcCCCcC----CcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
++.+.+++.. .+++++.+|++ ++|+.+.|||..+......++..++. ......+++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~-~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLG-SNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhc-CCCcEEEECCceecCEEEeCCCCC
Confidence 9988765431 23678888766 89999999998765433334444433 223345678999999999999864
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.5e-30 Score=229.60 Aligned_cols=199 Identities=51% Similarity=0.822 Sum_probs=158.3
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||+|+||+|+|..+||+|+||+|+||||+|+++++.++|+++++|+++++.+++.+|+.+...++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999997689999999999999999999999999999999864322211 1001123
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++...+.. .+++..||+++++.+++++++. ..++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1234589999999999988531 1378999999999999999999999998888888765
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-CCCcccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGS 249 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~-~~~~~~~ 249 (415)
+++|+|+|++++|..+++.... ...++..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1379999999998767665322 2446678
Q ss_pred cchhhhcccceEEEEEeCceEEec
Q 014953 250 EIIPASANEQFLKAYLFNDYWEDI 273 (415)
Q Consensus 250 ~~l~~l~~~~~i~~~~~~g~~~di 273 (415)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=5.1e-30 Score=233.09 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=166.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||||||+|+||+|+|..+||||+|++|+ |||+|+++.|.++|++++++++++... ..+++...+.... .+.. +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~~-~~~~~~~~~~~~~---~~~~-i 74 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEHN-TKFHLDESLKLLA---PNAT-V 74 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHHh-hhhhHHHHHHHhC---CCCE-E
Confidence 48999999999999999999999999999 999999999999999999999864321 1222222210000 0111 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.+.+. . ..||+++++.++.++.. .++|++++||++++.++.+++++|.+.+.+.++++...+
T Consensus 75 ~~~~~-~---------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 75 VELDG-E---------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEeCC-C---------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22211 1 26999999999988842 478999999999999999999989887777777666552
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhhhC----C-CC
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----P-TA 244 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-~l~~~l~~~~----~-~~ 244 (415)
..+|+.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+.+++.. . ..
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999989999999887432 24678999999997 5555555311 1 12
Q ss_pred Ccccccchhhhcccc-eEEEEEe-CceEEecCCHHHH
Q 014953 245 NDFGSEIIPASANEQ-FLKAYLF-NDYWEDIGTIRSF 279 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~-~g~~~di~t~~~y 279 (415)
..+..++++.+++++ ++.+|.+ +++|.||+||++|
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 234568888888664 6999999 6999999999997
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=2.8e-30 Score=234.41 Aligned_cols=222 Identities=20% Similarity=0.267 Sum_probs=168.6
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--------~~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--------PN---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--------CC---e
Confidence 69999999999999999999999999999 999999999999999999999999989998887531 11 3
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++...+.. ..|++++++.++.++ .++|++++||++++. ++++.|.+.+++.|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~-------~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFL-------DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHc-------CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 333222210 269999999999887 278999999998866 567778888888898887743333
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh---CC--CCC
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~---~~--~~~ 245 (415)
...++....| ++++..+.+|+..+. ..++.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3455544333 378889998876542 135789999999999986554321 11 234
Q ss_pred cccccchhhhcccc--eEEEEEeCceEEecCCHHHHHHHH
Q 014953 246 DFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 246 ~~~~~~l~~l~~~~--~i~~~~~~g~~~di~t~~~y~~an 283 (415)
.+..++++.++++. .++.+.. ++|.||+++++|.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 55678899888743 4445555 8999999999999873
No 51
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=3.9e-28 Score=217.90 Aligned_cols=203 Identities=19% Similarity=0.322 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC-
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD- 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~- 87 (415)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.. .+..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~----~~~~~ 75 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS----SLSSK 75 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc----cccCC
Confidence 6899999999999999999999999999999 999999999999999999999999999999998765311 0111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHH--HHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~--h~~~~~~~ti~~~~ 165 (415)
..+.+....+. .+.|++++++.++.++ .++|+|++||++++.++.+++++ +...++++++++..
T Consensus 76 ~~v~~~~~~~~-------~~~Gta~~l~~~~~~i-------~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~ 141 (216)
T cd02507 76 MIVDVITSDLC-------ESAGDALRLRDIRGLI-------RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLL 141 (216)
T ss_pred ceEEEEEccCC-------CCCccHHHHHHHhhcC-------CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEe
Confidence 11223222221 2369999999998887 36899999999999999999976 55556666666655
Q ss_pred cCCCc-------CCcccEEEECCC---CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 166 MDDSR-------ASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 166 ~~~~~-------~~~~g~v~~d~~---~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
..... ..+++++.+|++ .++..+.++++... ...++..++...+ ...+++++.++|+|+|+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~-~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 142 ASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHP-NVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCC-CEEEEcCcccccEEEecCcCC
Confidence 43221 456888999887 47777777776432 2224455555443 445688999999999998764
No 52
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=9.6e-28 Score=215.13 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccCh-hHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|+|||||||+|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++.. +.+.+++.... +... ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~--~~- 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK--QK- 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC--cc-
Confidence 6899999999999999999999999999999 99999999999999999999999765 45766665321 1110 00
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
..+.+.. +. ...||+++|+.+.+.+ .++|+|++||.+++.++.++++.|++.++.+|+++.+..
T Consensus 76 ~~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1111211 11 1369999999998876 368999999999999999999999999999999988754
Q ss_pred CC-----------cCCcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 168 DS-----------RASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 168 ~~-----------~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
.. ....+.++.+|++ +++..+.+..+.. ....++..++...| +..+++++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~-~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHP-RVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCC-CEEEEcCcccceEEEEEeeeC
Confidence 21 1234677777764 6888776543222 23344566666443 445688999999999998764
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=2.6e-27 Score=219.66 Aligned_cols=233 Identities=21% Similarity=0.323 Sum_probs=164.8
Q ss_pred eEEEEEcCCCCCccccccc-CCcccceeeCC-cceeehhehhhhhcc-CCcEEEEEcccChh-HHHHHHHhhccCCCCcc
Q 014953 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~-~~pK~llpv~g-~~pli~~~l~~l~~~-gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~ 84 (415)
|++||||||.||||+|+|. .+||+|+|++| + |||+|+++++... ++++|+|++++.+. .+.+++.+ . ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~--- 73 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LP--- 73 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CC---
Confidence 6899999999999999996 79999999999 7 9999999999998 59999999997653 45555532 1 01
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc--cChHHHHHHHHH---cCCcE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~h~~---~~~~~ 159 (415)
.+.++.... ..||++++..+..++... ...+.++|++||+++. .+|.++++.+.+ .++.+
T Consensus 74 ----~~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 74 ----EENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred ----CceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 123332211 269999999998887521 1246899999999775 457777765543 56778
Q ss_pred EEEEEEcCCCcCCcccEEEECCCC-----CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
|+...+... ...||++..+++. +|.+|.|||+....... .....+++++|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHH
Confidence 888877643 4789999998653 89999999986542110 001236899999999998877
Q ss_pred HHHhhhCCCC----------------Ccccccchhh---------hc-ccceEEEEEeCceEEecCCHHH
Q 014953 235 NLLRWRFPTA----------------NDFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRS 278 (415)
Q Consensus 235 ~~l~~~~~~~----------------~~~~~~~l~~---------l~-~~~~i~~~~~~g~~~di~t~~~ 278 (415)
..++...+.. ..+..+.++. ++ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7766543320 0011122222 11 1356889999999999999875
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=2.2e-26 Score=208.94 Aligned_cols=221 Identities=24% Similarity=0.365 Sum_probs=169.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.. ++ +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---------~~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---------PN---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---------CC---c
Confidence 69999999999985 689999999999 99999999999999999999999988888777642 11 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-e-cccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
.++.... ..|++++++.++.++.. ..++|++++||. + ...++..+++.|.+.++++++...+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25999999999998852 147899999998 3 3556899999998877888877776654
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~---~~ 245 (415)
+..|+.+..+++|+|..+.|++..... + ...+++++|+|+|+++.|..+++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 567888888877899999998753210 0 0125789999999998776666653221 23
Q ss_pred cccccchhhhccc-ceEEEEEeCce--EEecCCHHHH
Q 014953 246 DFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSF 279 (415)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y 279 (415)
.+..++++.+++. .+|+++.++|| |+.|+||.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 4467888888865 57999999876 7888888764
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.93 E-value=7.7e-25 Score=217.11 Aligned_cols=240 Identities=20% Similarity=0.302 Sum_probs=162.6
Q ss_pred eEEEEEcCCCCCcccccccC-CcccceeeCC-cceeehhehhhhhccCCcEEEEEcccChh-HHHHHHHhhccCCCCccc
Q 014953 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~-~pK~llpv~g-~~pli~~~l~~l~~~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (415)
|.|||||||.||||+|||.. +||+|+|++| + |||+|++++|...++++++|+++..+. .+.+.+.. + + +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~--~----~ 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I--G----K 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--C----C
Confidence 57999999999999999996 8999999977 7 999999999999999999999986543 33334422 1 1 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc--ChHHHHHHH---HHcCCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~~h---~~~~~~~t 160 (415)
....++... ..+||++++..+..++.... ...+.++|++||+++.. +|.++++++ .++++.+|
T Consensus 73 --~~~~~i~Ep---------~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 73 --LASNIILEP---------VGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred --CcceEEecc---------cccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 001122111 13699999988776663100 01345999999986543 478887765 34556666
Q ss_pred EEEEEcCCCcCCcccEEEECC------CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
+...+... ...||++..++ .++|.+|.|||+....... .....+++++|+|+|+++.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 66655433 57899999873 2589999999986542111 011247899999999977666
Q ss_pred HHHhhhCCC-----------------CCcccccchh---------hhcc-cceEEEEEeCceEEecCCHHHHHHHH
Q 014953 235 NLLRWRFPT-----------------ANDFGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 235 ~~l~~~~~~-----------------~~~~~~~~l~---------~l~~-~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
..+.+..++ ...+..++++ .+++ ..++.+++.+..|.|+|++++|.++.
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 555543221 0111122333 1222 35689999999999999999999874
No 56
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.7e-25 Score=189.76 Aligned_cols=224 Identities=15% Similarity=0.233 Sum_probs=150.4
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEc-ccChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~-~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
|..|+|||||||+|+||+| +.||||+.++|+ ++|.|++++|.++|++++++|+ +|..+.+.+++.+. ++
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~-~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY-PF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC-Cc-----
Confidence 5679999999999999998 899999999999 9999999999999999999999 88878777777542 12
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
. ..++...... -.+|+.+|+.+++++. ..|++++||+++...+ ++...+.+.. ++.+.
T Consensus 71 -~---~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d 128 (239)
T COG1213 71 -N---AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVD 128 (239)
T ss_pred -c---eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEe
Confidence 1 2233222111 1367999999999884 6799999999998863 3333333322 33333
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
..+......-.....+++|++..+.++-.. .+-.++|++.++.+.|....+......
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhh
Confidence 333211122223345578999988866552 245789999999997765433221111
Q ss_pred CcccccchhhhcccceEEEEE----e-CceEEecCCHHHHHHHHHhhcC
Q 014953 245 NDFGSEIIPASANEQFLKAYL----F-NDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~----~-~g~~~di~t~~~y~~an~~~l~ 288 (415)
. .-+.+......+.+-. + ..+|+||+||||+.+|.+.+..
T Consensus 186 ~----~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 186 E----YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred h----HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 0 1112222221122222 2 3579999999999999987754
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.93 E-value=2.8e-24 Score=197.16 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=158.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||+|.|+||. ||+|+|++|+ |||+|+++.|.++++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~---------~~- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA---------FG- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH---------cC-
Confidence 5789999999999993 7999999999 999999999999999999998864 556666642 11
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++...+. .+.|++.... +...+.. ...+.+++++||+ +++ ..+.++++.|..+++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 63 --GEVVMTSPD-------HPSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred --CEEEECCCc-------CCCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeee
Confidence 122221111 1246665443 3333321 0146799999999 554 44889999888776777776666
Q ss_pred cCC----CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 166 MDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 166 ~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
..+ ..++.++++ +|++|+|+.|.|+|..+.... .+++ +..+++.++|+|+|+++++..+.+..
T Consensus 130 ~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~- 196 (245)
T PRK05450 130 IHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSLP- 196 (245)
T ss_pred cCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhCC-
Confidence 532 234566755 888899999999985432100 0000 01247899999999999997665432
Q ss_pred CCCC-ccc-ccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhh
Q 014953 242 PTAN-DFG-SEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 242 ~~~~-~~~-~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~ 286 (415)
+... ... .++++.+-++.+++++.++| +|.|||||+||.+|++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 1111 111 11233333567899999996 999999999999999764
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.92 E-value=9e-24 Score=193.01 Aligned_cols=227 Identities=19% Similarity=0.287 Sum_probs=155.8
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.|+||. ||+|+|++|+ |||+|++++|.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C
Confidence 4679999999999994 7999999999 9999999999998 99999999864 566666642 1 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHc-CCcEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQS-GADITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~-~~~~ti~~ 163 (415)
+.++...+. ...|+++ +..++..+.. ..+.|++++||+ ++ ..++..+++.|... +.++++++
T Consensus 63 ---~~~~~~~~~-------~~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPD-------HPSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCcc-------cCchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 222211111 1247775 5555555531 136799999998 44 45689999988776 67888888
Q ss_pred EEcCCCc----CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+++. ...++ +..+++|+|+.|.+++...... +.+ ..+++.++|+|+|++++|..+...
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC
Confidence 7765421 22333 5567778999998765432100 000 013689999999999999866542
Q ss_pred hCCCCCcccccchh--hhcc-cceEEEEEeCceEEecCCHHHHHHHHH
Q 014953 240 RFPTANDFGSEIIP--ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (415)
Q Consensus 240 ~~~~~~~~~~~~l~--~l~~-~~~i~~~~~~g~~~di~t~~~y~~an~ 284 (415)
. ....+ ..+.++ .+++ +.+++++..+++|.|||||+||.+|++
T Consensus 193 ~-~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 11111 122322 2344 456999999999999999999999975
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.89 E-value=5.2e-22 Score=181.26 Aligned_cols=225 Identities=18% Similarity=0.303 Sum_probs=151.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--------C
Confidence 5789999999999993 5999999999 9999999999998 89999999864 567676643 1 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCC-cEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~-~~ti~~ 163 (415)
+.++...+. ...|++ .+..+...+. .+.|++++||. +...++.++++.|.+.+. ++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 112111111 123666 4555655542 47899999997 445668999998876543 555566
Q ss_pred EEcCCC----cCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+.. ++..+++ ..+++|+++.+.++|..... +. ...+.+.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~-~~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DG-ESARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CC-CCCceeEEEEEEEeCHHHHHHH-Hc
Confidence 554431 1334444 44567899999876532110 00 0013578999999999999753 32
Q ss_pred hCCCC-Ccccc-cchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHh
Q 014953 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 240 ~~~~~-~~~~~-~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~ 285 (415)
..... ..+.. +++ .++ .+.+++++..+++|.||++|+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 444 444 55679999999999999999999999763
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.85 E-value=1.3e-20 Score=185.18 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=158.7
Q ss_pred ceEEEEEcCCCCCcccccccC-CcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhH-HHHHHHhhccCCCCccc
Q 014953 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS-LNRHLARAYNYGSGVTF 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~-~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~-i~~~l~~~~~~~~~~~~ 85 (415)
+|.+||||||.||||+|+|.. .||+|+|++|..|||+++++++...++.+.+++++..+.. +.+.+. .. .. .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~--~~---~ 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL--NK---L 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc--CC---c
Confidence 379999999999999999998 7999999966339999999999988888887888876643 333442 21 10 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC--hHHHHHHHH---HcCCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~h~---~~~~~~t 160 (415)
. ..++-.. ..++|+.++..+..++.......+.-++|+++|+++... |.+.++... +.+..+|
T Consensus 79 -~--~~ii~EP---------~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt 146 (478)
T PRK15460 79 -T--ENIILEP---------AGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVT 146 (478)
T ss_pred -c--ccEEecC---------CCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0122111 125899888777666643100013468899999966543 544444332 3466666
Q ss_pred EEEEEcCCCcCCcccEEEECCC---------CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHH
Q 014953 161 ISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 231 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~ 231 (415)
+...+... ...||++..++. .+|.+|.|||+......+.- ...++||+|+|+|+.+
T Consensus 147 ~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~ 211 (478)
T PRK15460 147 FGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAG 211 (478)
T ss_pred EecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHH
Confidence 66655443 467999987642 26999999999866433221 1247999999999998
Q ss_pred HHHHHHhhhCCC--------------CCcc---cccchhhh---------c-ccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 232 ILLNLLRWRFPT--------------ANDF---GSEIIPAS---------A-NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 232 ~l~~~l~~~~~~--------------~~~~---~~~~l~~l---------~-~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
.+...+++..++ ...+ ..+.++.+ + +..++.+.+.+--|.|+|++.++.+..
T Consensus 212 ~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 212 RYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 776666543221 0000 01111111 1 124688888888899999999998864
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.4e-19 Score=150.09 Aligned_cols=220 Identities=14% Similarity=0.201 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+||+||.+++. +|+++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999999 99999999999999999999999999886 78876541
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++....-. -....-++..|+++++ +.-++.+|.....++ ++.+...-.-.....+.
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 3333321110 1356788999999885 466789998665542 11111111222222221
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH---HHHhhhCC--C
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL---NLLRWRFP--T 243 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~---~~l~~~~~--~ 243 (415)
..+--++..+.+|+|+++.---. .....+|+..|+...-. .+++...- +
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 12223456678899998863222 23567899999876433 34443211 1
Q ss_pred -CCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhcC
Q 014953 244 -ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 -~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~ 288 (415)
..-+..++.-+-++...+++-..+ +--++++++++|......++.
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 122334444444555555555544 346789999999888776543
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=9.8e-19 Score=157.83 Aligned_cols=242 Identities=21% Similarity=0.332 Sum_probs=160.0
Q ss_pred ceEEEEEcCCCCCccccccc-CCcccceeeCC-cceeehhehhhhhc-cCCcEEEEEcccChh-HHHHHHHhhccCCCCc
Q 014953 8 TVAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~-~~pK~llpv~g-~~pli~~~l~~l~~-~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~ 83 (415)
+|++||||||.||||+||+. .+||+++++.+ + .|++.+++++.. .+.++++++|+..+. .+.+.+.+ ...++
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e-~~~~~-- 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPE-IDIEN-- 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhh-hhhcc--
Confidence 47899999999999999976 59999999966 6 999999999988 678999999997764 33333332 10010
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC--hHHHHHHH---HHcCCc
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~h---~~~~~~ 158 (415)
.. . -++.+.. +.|+.|+..+.-.+... .++.-++|+++|+++... |.+.++.. .+++..
T Consensus 77 -~~-~--illEP~g----------RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~l 140 (333)
T COG0836 77 -AA-G--IILEPEG----------RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGI 140 (333)
T ss_pred -cc-c--eEeccCC----------CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCE
Confidence 11 1 1221211 47898887776555431 123459999999966543 55555433 345666
Q ss_pred EEEEEEEcCCCcCCcccEEEECCC------CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHH
Q 014953 159 ITISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~ 232 (415)
+|+...+... ...||.+...+. -+|.+|.|||+........- .-.+++++|+|+|+...
T Consensus 141 VTfGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~-------------sG~y~WNSGmF~Fra~~ 205 (333)
T COG0836 141 VTFGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE-------------SGEYLWNSGMFLFRASV 205 (333)
T ss_pred EEEecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH-------------cCceEeeccceEEEHHH
Confidence 6666655443 467999987441 26999999999876432221 12389999999999987
Q ss_pred HHHHHhhhCCC-----------CCccc-----ccc--------hhhhc--ccceEEEEEeCceEEecCCHHHHHHHHH
Q 014953 233 LLNLLRWRFPT-----------ANDFG-----SEI--------IPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (415)
Q Consensus 233 l~~~l~~~~~~-----------~~~~~-----~~~--------l~~l~--~~~~i~~~~~~g~~~di~t~~~y~~an~ 284 (415)
+...+++..|+ ..++. .+. +.+.+ +..++.+.+.+-.|.|+|++..+.+...
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 76666543332 00000 000 11111 2367888899889999999999988744
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.80 E-value=4.9e-18 Score=158.29 Aligned_cols=237 Identities=16% Similarity=0.172 Sum_probs=151.4
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
.+++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.++| +++.+++.+++.+.
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~--------- 107 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF--------- 107 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc---------
Confidence 356789999999999993 6999999999 999999999998765444333 45667777766421
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEE--
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITI-- 161 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti-- 161 (415)
+ ++++...+.. ..||+++ ..+++.++. ..+.+++++||. +... .+..+++.+.+. .++++
T Consensus 108 ~---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t 171 (293)
T PLN02917 108 G---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFST 171 (293)
T ss_pred C---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEE
Confidence 1 1222111111 2477766 567776642 147899999999 4554 488999987654 33333
Q ss_pred EEEEcCCCcCCcccEEE--ECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 162 SCLPMDDSRASDFGLMK--INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~--~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
++.....+++.+||.+. .|++|++..|...+-.+.... .+++ ....+.++|+|.|+.+.|. .+..
T Consensus 172 ~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~~--~~i~~~n~Giy~f~~~~L~-~l~~ 238 (293)
T PLN02917 172 AVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVNP--QFPYLLHLGIQSYDAKFLK-IYPE 238 (293)
T ss_pred EeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cccc--ccceEEEEEEEEeCHHHHH-HHHc
Confidence 22222223467888875 677888776654322111000 0111 1236789999999999997 4444
Q ss_pred hCCC---CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 240 RFPT---ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 240 ~~~~---~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
..++ ...+.+++. .+-.+.++.++..+....-|||++||.+|++.+.++
T Consensus 239 l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 239 LPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3222 223333343 223456788888776677999999999999977543
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.72 E-value=2.6e-16 Score=141.48 Aligned_cols=210 Identities=18% Similarity=0.194 Sum_probs=139.6
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCcccCCc
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|||||||.|+||+ ...||+|+|++|+ |||+|+++++.++ ++++++|++++.. +.+.+++... .
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 7999999999997 3579999999999 9999999999987 7999999998764 3343333210 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++.. . .+..++++.++..+++ .+.++++.||. +++.+ +..+++.+.+. +++++..+.
T Consensus 67 ~~~~~~~--~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVAG--G---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeCC--C---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 1222211 1 1456888888877621 47899999999 55554 78888877654 334444444
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
.+ ++...|++|.+..+.++... ....+ .|.|+...|..++....... .
T Consensus 129 ~~------~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~ 176 (217)
T TIGR00453 129 AD------TLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-F 176 (217)
T ss_pred cc------eEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-C
Confidence 32 34455666777777663211 23334 68999998887765432221 1
Q ss_pred ccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHh
Q 014953 247 FGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 247 ~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~ 285 (415)
...|....+. .+.++..++.+....+|+|++||..|...
T Consensus 177 ~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 1122222222 25678888877777899999999988753
No 65
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.71 E-value=3.4e-16 Score=141.74 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=141.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
|+++.|||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 467889999999999995 4589999999999 99999999999865 899999998765 3333322110
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
. ..+.++.. . .+.+++++.++..+.+ .+.++++.||. ++..+ +..+++.+.+.+ .++
T Consensus 70 -~--~~~~~~~~--~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 -D--PKVTVVAG--G---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred -C--CceEEeCC--c---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 01222211 0 2578999999887743 46899999999 45544 889999876654 334
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
++.+..+ .+. ..+++|.+.++.+ ... .... -+.+.|+.+.|..++....
T Consensus 129 ~~~~~~~----~~~--~v~~~g~~~~~~~---r~~---------------------~~~~-~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIK--RSDDGGGIVDTPD---RSG---------------------LWAA-QTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEE--EEcCCCceeecCC---hHH---------------------heee-eCCccchHHHHHHHHHHHH
Confidence 4444432 122 2244566655422 111 0122 2478999998887776532
Q ss_pred CCCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
.. ..+..|....+. .+.++..+..+..+.+|+|++||..|+..+.+
T Consensus 178 ~~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AE-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 21 112222222211 24567777767678899999999999876543
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.67 E-value=4.4e-15 Score=134.94 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=141.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||+|+|.|+|| .+|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++.+ ++ +
T Consensus 2 ~iIpA~g~s~R~------~~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~---------~g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRL------PGKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQK---------FG---I 60 (238)
T ss_pred EEEecCCCCCCC------CCCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH---------cC---C
Confidence 799999999999 38999999999 999999999998889999998853 445555432 11 1
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
.++...+. ...|+. .+..+...+.. ...+.++++.||. +...+ +.++++.+.+.+++++.+..+..+
T Consensus 61 ~~v~~~~~-------~~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKH-------HNSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCC-------CCChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 11111111 012433 33334333321 0146789999999 55554 788888876656677777777654
Q ss_pred Cc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 169 SR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 169 ~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.. ..+...+..|.+|+..-|.+.+-+.... .......|+ ...++...|+|.|++++|..+........+
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~-----~~~~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le 201 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRD-----FFAKRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLE 201 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCC-----ccccccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCccc
Confidence 11 1223344456678776676543321100 000001111 112567899999999999877543211111
Q ss_pred ccc-ccchhhhcccceEEEEEeCce-EEecCCHHHH
Q 014953 246 DFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (415)
Q Consensus 246 ~~~-~~~l~~l~~~~~i~~~~~~g~-~~di~t~~~y 279 (415)
..+ -+.|..+-.+.+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 111 245666777889999988766 4699999997
No 67
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.66 E-value=3.8e-15 Score=143.08 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=139.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
.|+++.|||||||.|+||. ...||+|+|++|+ |||+|+++.+.+.+ +++|+|++++....+.+.+...
T Consensus 2 ~mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~------- 70 (378)
T PRK09382 2 LMSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE------- 70 (378)
T ss_pred CCCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc-------
Confidence 3577899999999999994 4689999999999 99999999999987 7999999987765444332211
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
+ ..+.++. .. .+..++++.++..++ .+.+++..||. +++.+ +..+++...+. +.++
T Consensus 71 -~--~~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i 128 (378)
T PRK09382 71 -I--KFVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVL 128 (378)
T ss_pred -C--CeEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEE
Confidence 1 0122221 11 257889999988774 37899999998 55554 67777765543 5677
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
...+..+ +..|+...+|. .++..+ +.|.... .+.+....+
T Consensus 129 ~~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~--- 168 (378)
T PRK09382 129 PALPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD--- 168 (378)
T ss_pred EEEEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh---
Confidence 7777766 44565444543 345444 5554322 111211111
Q ss_pred CCCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
.... ..|..+.+. .+.+|..++-++.|.+|++|+||..|+..+..
T Consensus 169 -~~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 -GRGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred -CCCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 1111 234444333 35689999999999999999999999986644
No 68
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.66 E-value=2.4e-15 Score=135.38 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=139.0
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
.|||||||.|+||++ ..||+|+|++|+ |||+|+++++...+ +++|+|++++......+.+.. +... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccC-------C
Confidence 589999999999974 379999999999 99999999999876 899999998776554443311 1010 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++... .+...+++.++..++. ...+.++++.||+ +++.+ +..+++.+.+.++ .+...+.
T Consensus 70 ~~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 12332211 2567889999887741 0157899999998 55554 7889998865543 3333333
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
.+ ++...|++|.+..+.+..+. ..+.++ ++|+.+.|..++...... ..
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GE 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CC
Confidence 22 12335667888887763221 345567 899999998887654322 11
Q ss_pred ccccchhhhcc-cceEEEEEeCceEEecCCHHHHHH
Q 014953 247 FGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFE 281 (415)
Q Consensus 247 ~~~~~l~~l~~-~~~i~~~~~~g~~~di~t~~~y~~ 281 (415)
+..|...-+.+ +.++..++.+..-.||+||+||..
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 22232222222 346777776666669999999964
No 69
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.66 E-value=2.4e-16 Score=141.46 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=91.2
Q ss_pred ccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCC-----------CCccCCCCCccccCccCCCeeecCC
Q 014953 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-----------FSFYDATKPIYTSRRNLPPSKIDDS 317 (415)
Q Consensus 249 ~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~-----------~~~~~~~~~~~~~~~i~~~~~i~~~ 317 (415)
.|.++.+++.+ ++..+|||.|+ ++|++||+++|..... ..++..+..+.+.+.+.+
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g------- 97 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD------- 97 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC-------
Confidence 57888888766 88899999999 9999999999976421 001112222222222222
Q ss_pred ccccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe-ecEEeCCccccchhHHH----------hhhhCCCcceEeCC
Q 014953 318 KIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA----------SLLAEGRVPVGIGE 384 (415)
Q Consensus 318 ~i~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~----------~~~~~~~~~~~Ig~ 384 (415)
++.||++|+|+ ++.|. +++||++|.|++++.|. +++|+++++|+.++.+. ..++++ |.||.
T Consensus 98 ---~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~---v~IG~ 171 (231)
T TIGR03532 98 ---QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN---VLIGA 171 (231)
T ss_pred ---CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---cEECC
Confidence 23344444443 23332 34445555554444443 44445554444444442 234444 89999
Q ss_pred CCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|. +|.|++++.|++++.+.+.+.+++.
T Consensus 172 gsvI~~g~~Ig~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 172 NAVILEGVRVGKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred CCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 99996 9999999999999998888877764
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.66 E-value=6.7e-16 Score=134.15 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+++++++.+.+..++....
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999988999999999988778877775321
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee--cccChHHHHHHHHHcCCcEEEEEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL--YRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i--~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
..+.. .. -.|...++..++..+.. .++|++++||+. ....+..+++.+...+.....++.+
T Consensus 65 -~~~~~-~~---------g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN-AS---------GKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe-cC---------CCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11211 11 14778888888765432 478999999993 3455889999887765555444444
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.63 E-value=1.3e-15 Score=130.17 Aligned_cols=121 Identities=25% Similarity=0.380 Sum_probs=92.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++... + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999997 59999999999 999999999999999999999987 4455544221 1 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
+++..... ..|++++++.++..+.. .++|++++||+. .+.+ +..+++.+.+.++++++...
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33322211 15999999999988732 689999999994 3544 78999988877776665543
No 72
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.63 E-value=1.4e-14 Score=130.79 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=136.7
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+. +
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~---~------ 62 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY---G------ 62 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh---C------
Confidence 4679999999999993 5999999999 99999999999887 788887763 34455554321 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. +.+....... ....|+.++++.++.+++... ...+.++++.||. +...++.++++.+...+++.++.+.
T Consensus 63 ~~-~~~~~~~~~~-----~~~~~~~~~i~~~l~~l~~~~-~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 63 AE-VPFLRPAELA-----TDTASSIDVILHALDQLEELG-RDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CC-ceeeCChHHC-----CCCCCcHHHHHHHHHHHHHhC-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00 1111111100 001488999999988774210 0136899999999 3344589999998887778777777
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
+..+ ..-++... +++| ...+...+.... . .++ ....+..++|+|+++++.+... .
T Consensus 136 ~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~~-~------------~q~-~~~~~~~n~~~y~~~~~~~~~~-------~ 190 (223)
T cd02513 136 EFHR--FPWRALGL-DDNG-LEPVNYPEDKRT-R------------RQD-LPPAYHENGAIYIAKREALLES-------N 190 (223)
T ss_pred ecCc--CcHHheee-ccCC-ceeccCcccccC-C------------cCC-ChhHeeECCEEEEEEHHHHHhc-------C
Confidence 6554 22233222 2222 222221111000 0 000 0112567889999999877421 0
Q ss_pred CcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~ 285 (415)
.+ -++++..+..+. ...||++++|+..|...
T Consensus 191 -~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 -SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred -Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 00 166787787766 48999999999998653
No 73
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.63 E-value=1.3e-14 Score=131.60 Aligned_cols=218 Identities=15% Similarity=0.181 Sum_probs=136.1
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCccc
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~ 85 (415)
++.+||||||.|+||+ ...||+|+|++|+ |||.|+++++..+ .+++|+|+++... ..+.+.+.+ + + +
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~--~----~ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-L--N----V 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-c--C----c
Confidence 3689999999999996 5589999999999 9999999999875 5899999997654 223333322 1 1 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
....++++... .+..++++.++..+++ .+.++++.||. +...+ +.++++.+.+.++ .+.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEE
Confidence 11113333211 2456899998887743 35678889999 55555 7888888776553 3333
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+ .+... .++.+....+ + .. ...--+.+.|+.+.|....+.....
T Consensus 133 ~~~~d------ti~~~-~~~~~~~~i~--r-~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD------TVKRV-KDKQVIETVD--R-NE----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc------eEEEE-cCCeeEeccC--H-HH----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33322 11122 2344433322 1 10 1112346788888877665532111
Q ss_pred CCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.. +..|-.... ..+.++..++-+.....|+||+|+..|...+.
T Consensus 181 ~~-~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QF-LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CC-CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 11 223322222 23567888888878899999999999987654
No 74
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.60 E-value=1.6e-14 Score=126.84 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=88.1
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++..+.+.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999998899999999998876654443211 11 3
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEE
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADIT 160 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~t 160 (415)
.++.... +..|++++++.++.+..+ .+.|++++||+ ++.. .+..+++.+...+..++
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 3332211 124889999988762211 47899999999 4443 47888887766655433
No 75
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.56 E-value=1.2e-13 Score=114.49 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.+||+|||+|+||. ..=|||++++|| |||+|+++.+.+ .+++|+++++.+....++|+....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999996 245999999999 999999999998 889999999999998988885421
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
++++.... .|.-.-++.++..+. .+||++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 44443221 277788888887773 5999999999 45543 566666554
No 76
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.55 E-value=1.4e-13 Score=121.38 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=82.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|.|||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++|+|++++..+.+. . .
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARYA----A-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHHH----h-c--------
Confidence 567899999999999994 279999999999 99999999998 789999999876533221 1 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~ 154 (415)
+ +.++..... ...|+..+++.++...+ .+.+++++||. +.+.+ +..+++.+.+
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 0 112221111 12488889998887543 47899999999 55554 6777775543
No 77
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.53 E-value=4e-13 Score=122.44 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=128.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
.++++.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++......+.+...+
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------ 90 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------ 90 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc------
Confidence 3456789999999999996 4579999999999 999999999998 4899999999876543333222111
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCC--e-ecccC-hHHHHHHHHHcCCcE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADI 159 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD--~-i~~~~-l~~~l~~h~~~~~~~ 159 (415)
... +.++ ... .+..++++.++..+.. +..+|+.+| . +...+ +..+++...+.++
T Consensus 91 --~~~-i~~v--~gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga-- 148 (252)
T PLN02728 91 --DVP-LKFA--LPG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA-- 148 (252)
T ss_pred --CCc-eEEc--CCC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--
Confidence 111 2222 111 2567889998887742 334455566 4 45544 6888887776653
Q ss_pred EEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeee-EEEEeHHHHHHHHh
Q 014953 160 TISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG-VYLFKKEILLNLLR 238 (415)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-iyi~~~~~l~~~l~ 238 (415)
.+...+..+ .+...++++.+.. .++... ++.+. =-.|+.+.|....+
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~---t~~R~~-----------------------l~~~QTPQ~F~~~~l~~a~~ 196 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVK---TLDRKR-----------------------LWEMQTPQVIKPELLRRGFE 196 (252)
T ss_pred EEEeecchh------hEEEecCCCceee---ccChHH-----------------------eEEEeCCccchHHHHHHHHH
Confidence 455555443 1222344454433 222111 10000 01344455544444
Q ss_pred hhCCCCCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 239 WRFPTANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 239 ~~~~~~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
....+... ..|-...+ ..+.+|...+-+..-.-|.+|+|+..|...+.
T Consensus 197 ~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 197 LVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 32211111 12222211 22566777666667788999999999987654
No 78
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.53 E-value=6.5e-14 Score=122.61 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4589999999999984 9999999999 99999999999988999999998876655444321 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADI 159 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ 159 (415)
+.++..... ..|++++++.++.++.. ..+.+++++||+ +.+. .+..+++.+...++.+
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 222222111 24899999999887752 147899999999 4444 4788888776555443
No 79
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.49 E-value=1.5e-13 Score=103.02 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=70.8
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++.| +++.+.++.||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556667 66777889999999999 69999999999999999999999999999 899999
Q ss_pred CEEeeeEECCCeEEcCCcc
Q 014953 386 TKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~ 404 (415)
+++.+|+|++++.|+++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~~ 81 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGTE 81 (81)
T ss_pred CEEccCEECCCcEeCCCCC
Confidence 9999999999999999874
No 80
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.47 E-value=1.8e-12 Score=114.68 Aligned_cols=113 Identities=25% Similarity=0.309 Sum_probs=81.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
.+++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+.. .+++|+|++++. +...... ..+
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~~~~~------~~~--- 67 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERYQSLL------PPG--- 67 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHHHhhc------cCC---
Confidence 356889999999999997 58999999999 999999999975 478999988642 2221111 001
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
+.++..... ..|..++++.++..++ .+.++|++||+ ++..+ +..+++.+.
T Consensus 68 ----~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ----CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ----CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 2589999999998775 37899999999 55554 677777654
No 81
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.46 E-value=2.7e-12 Score=109.62 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=92.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.+.++-|||||||.|+||+ .+|-|+|+.|+ ||++++++.+..++++++++|++|........+. ...
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~--- 68 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQL--- 68 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccC---
Confidence 3567889999999999998 99999999999 9999999999999999999999997322222221 111
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHc
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS 155 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~ 155 (415)
.+.++... +|..|.+.|++.+....... .+-++++.||+ +...++..+++.+...
T Consensus 69 ----~~~~v~np--------d~~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 69 ----GVTVVVNP--------DYAQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----CeEEEeCc--------chhhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 13333222 23469999999999887641 25899999999 4455688888877666
No 82
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.43 E-value=8e-13 Score=103.93 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=71.0
Q ss_pred eee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEee
Q 014953 312 SKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKY 390 (415)
Q Consensus 312 ~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 390 (415)
+++ +++.+.+++||++|+|+++.|++|+||++|+|+++++|.+|+++++ +.||++|.+++
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEe
Confidence 455 6777789999999999989999999999999999999999999999 89999999999
Q ss_pred eEECCCeEEcCCcccCcc
Q 014953 391 EQLKPICHIVETKYDSST 408 (415)
Q Consensus 391 ~~i~~~~~i~~~~~~~~~ 408 (415)
|+|+++++|+++......
T Consensus 63 siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 63 AIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EEECCCCEECCCCEECCC
Confidence 999999999999876554
No 83
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.42 E-value=1.4e-11 Score=110.76 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=139.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
|||+|+|.++||. .|.++|++|+ ||+.|+++.+.+++ +++|+|.+. .+.+.+...+ + +. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--g~------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--GA------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--CC------E-
Confidence 8999999999993 6999999999 99999999999876 677777554 3455554432 1 11 1
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+.+..+..-. ....|+.+++++++..++.. ...+.++++.+|. +.. .++.++++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 1111111100 01248899999998877421 1147799999999 444 4589999998887788777777754
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
.. ..+. ...+++|++..+........ ++-....+..+.++|+++++.+.. . . .
T Consensus 136 ~~--~~~~-~~~~~~g~~~~~~~~~~~~~---------------rQd~~~~y~~nga~y~~~~~~~~~---~----~-~- 188 (222)
T TIGR03584 136 FP--IQRA-FKLKENGGVEMFFPEHFNTR---------------SQDLEEAYHDAGQFYWGKSQAWLE---S----G-P- 188 (222)
T ss_pred CC--hHHh-eEECCCCcEEecCCCcccCC---------------CCCCchheeeCCeEEEEEHHHHHh---c----C-C-
Confidence 31 2222 24445677666552211100 010112366789999999987742 1 0 1
Q ss_pred cccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHh
Q 014953 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~ 285 (415)
.-++++..|..+. ...||++++|+..|...
T Consensus 189 --------~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 189 --------IFSPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred --------ccCCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 1146678888775 48999999999999764
No 84
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.41 E-value=9.6e-13 Score=114.79 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++|+|++++..+. +. . ++
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~--~--------~~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA--L--------LG-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh--h--------cC--
Confidence 468999999999997 39999999999 9999999999987 89999999877544 11 0 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHH
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h 152 (415)
+.++..... ..|+.++++.++..++ .+.+++++||+ +.+.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 222222111 2589999999988764 48999999999 44554 67777765
No 85
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=4.7e-12 Score=111.67 Aligned_cols=109 Identities=17% Similarity=0.335 Sum_probs=75.3
Q ss_pred CCcccccceEEEEEcCCCCCcccccccCCcccceeeCC-cceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccC
Q 014953 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (415)
Q Consensus 1 ~~~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g-~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~ 79 (415)
|......++.+||||||.|+||+ .||+|+|++| + |||+|+++.+... +++|+|++++. .. . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKDK--KF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECch--hc----c----c
Confidence 33444567889999999999996 7999999999 9 9999999999876 88999988751 11 0 1
Q ss_pred CCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHH
Q 014953 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDF 148 (415)
Q Consensus 80 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~ 148 (415)
. +.++..... ...|...++..++...+ .+.+++++||+ +.+.+ +.++
T Consensus 64 ~---------~~~v~d~~~-------~~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKES-------DLFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCC-------CCCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 112222111 02466667766554333 48999999999 55655 3444
No 86
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.39 E-value=8.3e-12 Score=120.53 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=86.0
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++. +
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~------~--- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP------G--- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc------C---
Confidence 4567899999999999994 379999999999 999999999975 589999977665444333211 0
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+.++..... ...|..++++.++..++ .+.+++++||+ ++..+ +..+++.+...+++
T Consensus 67 -----~~~i~d~~~-------g~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 -----LPVYPDILP-------GFQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred -----CcEEecCCC-------CCCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 112211111 11488899999987764 46799999998 55555 67777765555544
No 87
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.35 E-value=3.5e-11 Score=107.05 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChh-HHHHHHHhhccCCCCcccC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~~ 86 (415)
+-|||||||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..+++|+|++..... .+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 358999999999997 6799999999999 999999999987 568999999987763 33333322 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.+.++.-. ....++++.++..+... .+.+++..|=- +...+ +.++++..++. ....+...
T Consensus 67 --~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~ 128 (221)
T PF01128_consen 67 --KVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPAL 128 (221)
T ss_dssp --TEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred --CEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEE
Confidence 14444211 25788999999888652 35677766655 44444 67788776552 34456666
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeee-eEEEEeHHHHHHHHhhhCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Giyi~~~~~l~~~l~~~~~~ 243 (415)
+..+ .+...+++|.+.+..+.... +.+ -=-.|..+.|....+.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~l--------------------------~~~QTPQ~F~~~~l~~a~~~a~~~ 176 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSKL--------------------------WAVQTPQAFRFELLLEAYEKADEE 176 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGGE--------------------------EEEEEEEEEEHHHHHHHHHTHHHH
T ss_pred eccc------cEEEEecCCcccccCCHHHe--------------------------eeecCCCeecHHHHHHHHHHHHhc
Confidence 6554 23345556766655432211 111 01245666666555443111
Q ss_pred CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
...+..|.--....+.++...+-+..-+-|.+|+|+..|...+
T Consensus 177 ~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 177 GFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp THHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1111111111111267777777666678899999999998754
No 88
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.35 E-value=5.7e-12 Score=93.96 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=66.4
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++.+ +++.+.+++||++|.|+ ++.|++|+|+++|+|+++++|.+|+++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4556667 56777789999999998 79999999999999999999999999999 899999
Q ss_pred CEEee-eEECCCeEEcC
Q 014953 386 TKIKY-EQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~~-~~i~~~~~i~~ 401 (415)
+.+.+ ++++++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99985 99999999874
No 89
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.34 E-value=1.5e-10 Score=102.48 Aligned_cols=222 Identities=16% Similarity=0.190 Sum_probs=134.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
++++-|||||||.|+||. ...||.+++++|+ ||+.|+++.|... .+++|+|++.... ..+.++.. ...
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~~~---- 71 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--LSA---- 71 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--hcc----
Confidence 456789999999999998 5899999999999 9999999999875 4799999998744 33333332 101
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
...++++... ....++++.++..++. ...+.||+..+=- +...+ +.++++.... ..+.+
T Consensus 72 ---~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai 132 (230)
T COG1211 72 ---DKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAI 132 (230)
T ss_pred ---CCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEE
Confidence 1124443221 2578999999988863 1246777776654 44443 6777743332 33466
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
.+.+..+ .+...++++.+........... ...| -.|+.+.|.+......
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~-----------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWA-----------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhh-----------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666654 2333444566665543322111 0011 1344455555544332
Q ss_pred CCCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.+..++..|.--....+.++....=+-+-+.|.+|+|+..|+..+-
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 2221222111111122567777776667899999999999987553
No 90
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=4.9e-11 Score=102.59 Aligned_cols=235 Identities=18% Similarity=0.279 Sum_probs=158.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++..+||+|-=.+||| --|||--|+|+ |||.|+.+++.++|.++++|.+. ++.+.+.+.+ ++
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATD--DERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH---------hC
Confidence 5667899999999999 57999999999 99999999999999999999984 4567776653 22
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. + ++.. .. ...||- .+..+...+.- ...+-++=+.||. ++... +..+++...+.++++.-+..
T Consensus 64 ~~-a-vmT~-~~-------h~SGTd-R~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GE-A-VMTS-KD-------HQSGTD-RLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CE-E-EecC-CC-------CCCccH-HHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 11 1 1111 11 113553 44444444421 1246677789999 44443 78888888877788777776
Q ss_pred EcCCCc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 165 PMDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 165 ~~~~~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
+..++. .++-..+..|.+|+-+-|...|-+..... .- + .+.+.-.|||.|++++|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~--------~-----~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG--------G-----TPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC--------C-----cchhheeehHHhHHHHHHHHHhcC-
Confidence 665421 23445567788899999998776543110 00 0 135677899999999998776543
Q ss_pred CCC-Cccc-ccchhhhcccceEEEEEeCceE-EecCCHHHHHHHHHhhcC
Q 014953 242 PTA-NDFG-SEIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~-~~~~-~~~l~~l~~~~~i~~~~~~g~~-~di~t~~~y~~an~~~l~ 288 (415)
+.. +..+ -+.|.-|-.+.+|.+...+..- ..++|++||.+|.+.+.+
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 221 0000 1345556678899999988654 899999999999876643
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.33 E-value=9.4e-12 Score=109.42 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
.+||||||.|+||. .||.|++++|+ ||++|+++.+.+.++++++|++++..+.+. .+.... ... ..
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~~------~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LAD------ER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hcC------CC
Confidence 58999999999997 58999999999 999999998888899999999987654321 111110 000 01
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~ 156 (415)
+.++... ++..|.+.+++.++..+.. ...+.+++++||+ +...+ +..+++.....+
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 2222111 1124889999999887632 1147899999999 55555 677777654433
No 92
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.8e-12 Score=124.89 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=78.9
Q ss_pred CCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCC
Q 014953 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (415)
Q Consensus 299 ~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~ 376 (415)
...+...+.|+.++.| .++.|.||+||+||.|| |+.|++|.||.||+||+||+|.+|+|++++.|++|
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~---------- 396 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEG---------- 396 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCC----------
Confidence 3455666777777778 68888999999999999 89999999999999999999999999999988877
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.+.+||+|. +.++|++-.++.++++
T Consensus 397 ---~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 397 ---AILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cccCCCcEEeeeeEeCCCccccccccc
Confidence 6666777777 7777777777777554
No 93
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.31 E-value=9.2e-12 Score=109.07 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. ++++|+|++.+..+. +.... ++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~--------~~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG--------FG-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc--------CC--
Confidence 358999999999996 259999999999 999999999976 589999988755322 11110 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+.++..... ...|++++++.++..++ .+.+++++||+ +.+.+ +.++++.+.+.++.
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 122222111 12599999999988774 47899999999 56665 67777765543443
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.29 E-value=1e-10 Score=106.26 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=78.1
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh--hHHHHHHHhhccCCCCcccCC
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|||||+|.++||. +|.|+|++|+ ||++|+++.+...+ +++++|+++... +.+.+++... +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~-----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL-----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc-----C-----
Confidence 7999999999993 5999999999 99999999999987 899999998765 4555554321 1
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~t 160 (415)
+.++.... .+.......++...+ .+.++++.||+ +.+.+ +.++++.+...+.+.+
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22221111 011112222221111 47899999999 55544 7899988876665544
No 95
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=8e-12 Score=106.95 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=49.9
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHH
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 369 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~ 369 (415)
.+.+++++.+ +++.+. +++||++|.|+ ++.|.+|+|++++.|+.++.+.+|+|++++.|.+++.+
T Consensus 35 ~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 35 PVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEE
Confidence 3444444555 455554 68888888888 68888899999999998889988999999888888755
No 96
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.6e-12 Score=117.40 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=65.0
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHI 399 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i 399 (415)
++.+|++|.|+ ++.|++|+||++|.||++++|.+|++|+| ++||+||.|+|||||+++.|
T Consensus 334 d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n-------------------V~vg~G~~IensIIg~gA~I 394 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN-------------------VVVGDGVNIENSIIGMGAQI 394 (433)
T ss_pred hhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------cEecCCcceecceeccccee
Confidence 68899999999 79999999999999999999999999999 89999999999999999999
Q ss_pred cCCcccCc
Q 014953 400 VETKYDSS 407 (415)
Q Consensus 400 ~~~~~~~~ 407 (415)
++|++...
T Consensus 395 g~gs~L~n 402 (433)
T KOG1462|consen 395 GSGSKLKN 402 (433)
T ss_pred cCCCeeee
Confidence 99998654
No 97
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.27 E-value=7e-11 Score=114.43 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=76.9
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
++.++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+.. .+++++|+++...... +..
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~~--------- 231 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YRS--------- 231 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hhh---------
Confidence 4567889999999999997 69999999999 999999999976 4788888776542211 111
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHH
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~ 151 (415)
++ +.++..... ..|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 232 ~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 223322211 1477788887765543 46899999999 55554 5566553
No 98
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.25 E-value=3.9e-11 Score=89.38 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++++ +++.+.++.||++|.|+ ++.|.+|+|++++.|+++++|.+++++++ +.||++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 3455666 55666778888888887 57788888888888888888888888888 788888
Q ss_pred CEEe-eeEECCCeEEcC
Q 014953 386 TKIK-YEQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~ 401 (415)
+++. +++++++++|++
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8887 788888877764
No 99
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=6.4e-11 Score=88.45 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=63.7
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
++++++ +++.+ .+++||++|+|+ ++.|.+|+|+++++|+++++|.+|+++++ +.||++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 455556 55656 478999999998 79999999999999999999999999999 899999
Q ss_pred CEEe-eeEECCCeEEcC
Q 014953 386 TKIK-YEQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~ 401 (415)
+.+. +++|+++++|+.
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 9999 599999998874
No 100
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.24 E-value=2.2e-11 Score=107.29 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=74.2
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHH---
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEV--- 369 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~--- 369 (415)
+++.+.+.+.+.++++++| +++.|.++.||++|.|+ ++.+.+|+|+++|.|+++++|. ++++.++++++.++.+
T Consensus 24 I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s 103 (193)
T cd03353 24 IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKS 103 (193)
T ss_pred ECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecc
Confidence 3444444555555666666 55666666777777776 4666677777766666666665 3555444444333221
Q ss_pred ----------------------------------------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 370 ----------------------------------------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 370 ----------------------------------------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.+.++++ +.||.++.+. ++.|++++.|++++.+.+.
T Consensus 104 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~---~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~ 180 (193)
T cd03353 104 TIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDN---VFIGSNSQLVAPVTIGDGATIAAGSTITKD 180 (193)
T ss_pred eEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCC---eEEccCCEEeCCcEECCCcEECCCCEEccc
Confidence 1123333 6666666665 6889999999999999999
Q ss_pred ccccccC
Q 014953 409 ISRFSLL 415 (415)
Q Consensus 409 ~~~~~~~ 415 (415)
+-+++++
T Consensus 181 v~~~~~v 187 (193)
T cd03353 181 VPPGALA 187 (193)
T ss_pred cCCCCEE
Confidence 9888864
No 101
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.22 E-value=2.7e-11 Score=106.97 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=56.8
Q ss_pred ccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--------------------------
Q 014953 318 KIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-------------------------- 370 (415)
Q Consensus 318 ~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-------------------------- 370 (415)
.+.++.||++|+|+ ++.|.+|+||++|.|++++.|.+++|++++.|..++.+.
T Consensus 16 ~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~ 95 (204)
T TIGR03308 16 ELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDAS 95 (204)
T ss_pred EEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccc
Confidence 33444555555555 355555555555555555555555555555544444332
Q ss_pred -------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 -------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 -------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ |.||.+|.|. ++.||+++.|++++.+.+.+-++++
T Consensus 96 ~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~ 150 (204)
T TIGR03308 96 DDADFFAWRRAKRVTIGHD---VWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTI 150 (204)
T ss_pred ccccccccccCCCeEECCC---CEECCCCEECCCCEECCCCEECCCCEECCCCCCCcE
Confidence 233444 6777777776 8888888888888888888877765
No 102
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.21 E-value=6.3e-11 Score=100.42 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=62.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+...+.+++++.+ +++.|. .+.||++|.|+ ++.| .+|+||++|.|++++.|.+++|+++
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 34445555555556666666 555554 36777777777 5766 4578888888888888888877777
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
|.||.+|.|. +++|++++.|++++.+.+
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 6667766665 566666666666665544
No 103
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.20 E-value=9.9e-11 Score=107.41 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=20.3
Q ss_pred hhhCCCc-ceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 372 LLAEGRV-PVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 372 ~~~~~~~-~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
.|.++.. .+.||+|+.|+ .+.|++||+||+++-
T Consensus 216 ~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~ 250 (338)
T COG1044 216 TIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCI 250 (338)
T ss_pred eeccccccCceecCCcEEcceeEEccccEECCCcE
Confidence 3344433 35566777776 577777777777664
No 104
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.16 E-value=9.3e-11 Score=102.26 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+...+.+++++.| .++.|. .++||++|.|+ ++.| .+|+||++|+|++++.|.+|+|++++.|
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~I 95 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALV 95 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEE
Confidence 44555555555556666666 566654 35677788887 5776 4689999999999999999999888555
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.++.+. ++ +.||++|.|. +|++.++..|++++
T Consensus 96 G~ga~I~----~g---~~IG~~s~Vgags~V~~~~~ip~~~ 129 (192)
T TIGR02287 96 GMNAVVM----DG---AVIGENSIVAASAFVKAGAEMPAQY 129 (192)
T ss_pred CCCcccC----CC---eEECCCCEEcCCCEECCCCEECCCe
Confidence 5543331 12 3444444444 44444444444443
No 105
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.16 E-value=1.4e-10 Score=86.79 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=57.4
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||.+|.+.++++++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~ 61 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGE 61 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECC
Confidence 367888887 57778899999999999999999999988 8899999999999999999988
Q ss_pred CcccCccc
Q 014953 402 TKYDSSTI 409 (415)
Q Consensus 402 ~~~~~~~~ 409 (415)
++....+|
T Consensus 62 ~~~v~~~i 69 (81)
T cd04652 62 KCKLKDCL 69 (81)
T ss_pred CCEEccCE
Confidence 88765544
No 106
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.15 E-value=1.2e-10 Score=101.36 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=80.2
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+.+|.+||||||.++|| .+|+|++++|+ ||++|+++.|....- .++|+...+.+. +.. +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----------~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----------F 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----------c
Confidence 46789999999999999 79999999999 999999999988754 555555444331 111 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcC
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~ 156 (415)
+ ++++.+... . .|...+++.++.... .+.+++++||+ +...+ +..+++...+.+
T Consensus 61 g---~~vv~D~~~-------~-~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------G-FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------C-CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 234433322 1 289999999988765 48999999999 55555 455555544433
No 107
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.12 E-value=2.7e-10 Score=107.83 Aligned_cols=101 Identities=18% Similarity=0.055 Sum_probs=56.1
Q ss_pred eEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccC
Q 014953 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 343 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~ 343 (415)
.+.-+++|..-+..-..++... .....++|++.+.+++.+++++.| +++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 3566788876555444444332 222345666666666666666655 444443 45555555555 3444 35666666
Q ss_pred cEECCCcEEe-ecEEeCCccccchhHH
Q 014953 344 SRINANVHLK-DTMMLGADFYETDAEV 369 (415)
Q Consensus 344 ~~ig~~~~i~-~sii~~~~~~~~~~~~ 369 (415)
|.|++++.|. +++|+++++|.+++.+
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 6666666665 4555555555555544
No 108
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.11 E-value=2.9e-09 Score=98.00 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=126.5
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhc--------cCCcEEEEEcccChhHHHHHHHhhcc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN--------SGINKVYILTQYNSASLNRHLARAYN 78 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~--------~gi~~I~vv~~~~~~~i~~~l~~~~~ 78 (415)
-+|+||||.||||+ .+.||+|+||+ |+ |+++|+++++.+ .+|..+++...+.++.+.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78999999999 99 999999999986 3467777777788889999998643
Q ss_pred CCCC--cccCCceEEEecCccC--CCCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCee-cccChHHHH
Q 014953 79 YGSG--VTFGDGCVEVLAATQT--PGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHL-YRMDYMDFV 149 (415)
Q Consensus 79 ~~~~--~~~~~~~v~i~~~~~~--~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l 149 (415)
+..+ ..|....+..+..... ..+.. ...+.|.|+.+.... ..++.....+.+.+.+.+.|.+ ....--.++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 1111 1111111111111000 00001 123557777665332 1222111233678889999984 444233467
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCC--eEEEEEcCCcccccccc-cccccccccccccccccceeeeeEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMA-VDTTVLGLSKQEAEEKPYIASMGVY 226 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Giy 226 (415)
-.+..+++++.+-+.+.+.. .+.-|++...++|+ ++++.+-|......... .+. ......+....++...
T Consensus 157 G~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~------~~~~~~~~~~~n~~~~ 229 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIP------KDIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCc------CCCCceeeccceEEEE
Confidence 77778888888777665542 23346555432354 55665544321110000 000 0011124567889999
Q ss_pred EEeHHHHHHHHh
Q 014953 227 LFKKEILLNLLR 238 (415)
Q Consensus 227 i~~~~~l~~~l~ 238 (415)
+|+-+++++.++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999987764
No 109
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.11 E-value=1.2e-09 Score=102.98 Aligned_cols=217 Identities=19% Similarity=0.288 Sum_probs=127.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC---CcceeehhehhhhhccC------------CcEEEEEcc-cChhHH
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG------------INKVYILTQ-YNSASL 69 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~g------------i~~I~vv~~-~~~~~i 69 (415)
..++.+||||||.|||| +...||+|+||+ |+ |++++.++++.+.+ + .+++.++ +.++.+
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t 87 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEET 87 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHH
Confidence 35789999999999999 588999999998 68 99999999998742 3 4567777 778889
Q ss_pred HHHHHhhccCCCC---cc-cCCceEEEecCccCC--CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCCe
Q 014953 70 NRHLARAYNYGSG---VT-FGDGCVEVLAATQTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDH 139 (415)
Q Consensus 70 ~~~l~~~~~~~~~---~~-~~~~~v~i~~~~~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~ 139 (415)
.+++.+...|+-. .. |....+..+...... .+.. .-.+.|.|+-...... .+++....+.+.+.+.+.|.
T Consensus 88 ~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 88 RKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 9999864323211 00 000001111100000 0000 1234577766554322 22222223468999999999
Q ss_pred e-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE-CCCCCeEEEEEcCCcccccccccccccccccccccccc
Q 014953 140 L-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (415)
Q Consensus 140 i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (415)
+ ...---.++-++.++++++.+-+.+...+ .+.-|.+.. |..-+++++.+-|....... .......
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~~-----------~~~g~l~ 235 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEKR-----------DADGELQ 235 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhcc-----------CcCCcEe
Confidence 4 43333467888889999998877665532 244555554 32224566666554322100 0001111
Q ss_pred cceeeeeEEEEeHHHHHHHHhh
Q 014953 218 PYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 218 ~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+..++.+.+|+-++++++.+.
T Consensus 236 f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 236 YNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cccchHhhheeCHHHHHHHHhh
Confidence 2344556778998888877643
No 110
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=3.4e-10 Score=96.87 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhh
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 372 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~ 372 (415)
.+...+.+.+.+++++.+ +++.+. +++||++|.|+ ++.|. +++||++|.|+++++|.+|+++++
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 344445555566666666 566554 68899999998 68886 699999999999999999999999
Q ss_pred hhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 373 LAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
+.|+.++.+.+++|+++++|++++..
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEE
Confidence 67777777777777777777777643
No 111
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=3.7e-10 Score=84.08 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=58.3
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.+.+|+||++|.|++++.|.+|+++++ +.||++|.+.+++|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~ 61 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGE 61 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECC
Confidence 478889998 68888899999999999999999999999 8899999999999999999988
Q ss_pred CcccCc
Q 014953 402 TKYDSS 407 (415)
Q Consensus 402 ~~~~~~ 407 (415)
+.....
T Consensus 62 ~~~i~~ 67 (79)
T cd03356 62 NVRVVN 67 (79)
T ss_pred CCEEcC
Confidence 876543
No 112
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.10 E-value=3.8e-10 Score=84.03 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=54.0
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||++++|.+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~ 61 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGK 61 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECC
Confidence 468888888 68888999999999999999999999999 7788888777777777777777
Q ss_pred Cccc
Q 014953 402 TKYD 405 (415)
Q Consensus 402 ~~~~ 405 (415)
++..
T Consensus 62 ~~~i 65 (79)
T cd05787 62 GCTI 65 (79)
T ss_pred CCEE
Confidence 7654
No 113
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=2.2e-10 Score=107.58 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=55.4
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEcc-eEEeeeEEccCcEECCCcEEee-cEEeCCccccchhHH
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKD-TMMLGADFYETDAEV 369 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~~-~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~ 369 (415)
++|+..+...+.|+.++.| ++|.|+||.||+|+.|.. +.+++|.||++|.|||.++|+. |.|.+++||++=+++
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv 353 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE
Confidence 3444444445555556667 678888999999999985 8999999999999999999987 777777776544433
No 114
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.08 E-value=1.3e-09 Score=96.53 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=82.8
Q ss_pred eEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccC
Q 014953 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 343 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~ 343 (415)
++..++.+....+....+.+.. ....++.+.+.+.+.+.+++++.+ +++.|. ++.||++|.|+ ++.|. ++.||++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 4556666665555555444332 222344555555555666666666 555554 46777777776 56663 5777777
Q ss_pred cEECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 344 SRINANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 344 ~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|+|++++.|.+ +.++++ |.||+++.+. ++.|++++.|++++.+.+.+-.++
T Consensus 142 ~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~ 194 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEG-------------------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGG 194 (201)
T ss_pred CEECCCCEEeCCcEECCC-------------------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCC
Confidence 77777777763 555555 8899999987 899999999999998777665554
No 115
>PLN02472 uncharacterized protein
Probab=99.07 E-value=4.1e-10 Score=101.67 Aligned_cols=92 Identities=7% Similarity=0.026 Sum_probs=57.6
Q ss_pred cCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----------eeEEccCcEECCCcEEeecEEe
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKDTMML 358 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----------~svig~~~~ig~~~~i~~sii~ 358 (415)
+.+.+.+...+.++.++.| .++.++ ...||++|.|+ +|.|. +++||++|+||+++.|.+|+|+
T Consensus 68 I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Ig 147 (246)
T PLN02472 68 VAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIE 147 (246)
T ss_pred ECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEc
Confidence 3444444444455555555 444443 24566666666 46652 6899999999999999999999
Q ss_pred CCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 359 GADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
++ |.||.+|.|. +++|++++.|++++.+.
T Consensus 148 d~-------------------v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 148 PE-------------------CIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred CC-------------------CEECCCCEECCCCEECCCCEECCCCEEC
Confidence 99 5555555554 55555555555555433
No 116
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.07 E-value=7.2e-10 Score=93.66 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=64.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCcccc----ceECCCCEEc-ceEEee-----eEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~I~-~~~i~~-----svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+.+.+.+++++.| +++.|.. ++||++|.|+ ++.|.. ++||+++.|++++++.+++|+++
T Consensus 8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 84 (154)
T cd04650 8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY--- 84 (154)
T ss_pred EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence 45566666666667777777 5666653 4788888887 577754 78888888888888888888888
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.||.++.+. +++|++++.|++++.+.
T Consensus 85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred ----------------CEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 5666666664 56666666666655444
No 117
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=7.1e-10 Score=94.70 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=48.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEee-----------eEEccCcEECCCcEEeecEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----------SVVGIRSRINANVHLKDTMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~~-----------svig~~~~ig~~~~i~~sii 357 (415)
++++.+.+.+...+++++.| +++.+. .++||++|.|+ ++.|.+ +.||++|.++.++.|.+++|
T Consensus 7 ~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~I 86 (164)
T cd04646 7 VVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKI 86 (164)
T ss_pred EECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEE
Confidence 44555555555566666666 556553 36788888887 677754 35778888888888888888
Q ss_pred eCCccccch
Q 014953 358 LGADFYETD 366 (415)
Q Consensus 358 ~~~~~~~~~ 366 (415)
++++.++.+
T Consensus 87 Gd~~~Ig~~ 95 (164)
T cd04646 87 GNNNVFESK 95 (164)
T ss_pred CCCCEEeCC
Confidence 888544444
No 118
>PLN02296 carbonate dehydratase
Probab=99.06 E-value=5.6e-10 Score=102.19 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----------eeEEccCcEECCCcEEeecEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKDTMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----------~svig~~~~ig~~~~i~~sii 357 (415)
++.+++.+...+.|++++.| .++.|. ++.||++|.|+ ++.|. +|+||++|+||+++.|.+|+|
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 44555555555556666666 556554 24678888887 56663 578888888888888888888
Q ss_pred eCCccccch
Q 014953 358 LGADFYETD 366 (415)
Q Consensus 358 ~~~~~~~~~ 366 (415)
++++.|+.+
T Consensus 140 gd~v~IG~g 148 (269)
T PLN02296 140 EDEAFVGMG 148 (269)
T ss_pred CCCcEECCC
Confidence 888444433
No 119
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.03 E-value=2.5e-09 Score=94.11 Aligned_cols=101 Identities=17% Similarity=0.088 Sum_probs=65.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee-cEEeCCccccchhHH
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD-TMMLGADFYETDAEV 369 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~ 369 (415)
++++...+...+.++.++.+ +++.|. ++.||++|+|+ ++.| .++.||++|.|++++.+.+ +.|+++
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~--------- 156 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEG--------- 156 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCC---------
Confidence 34444444444445555555 444443 55566666665 4555 3466666666666666654 555555
Q ss_pred HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 370 ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 370 ~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.+|.+. ++.|++++.|++++.+.+.+.++++
T Consensus 157 ----------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~ 192 (197)
T cd03360 157 ----------AFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSV 192 (197)
T ss_pred ----------CEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCE
Confidence 8899999997 7999999999999998888776654
No 120
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.02 E-value=6.7e-10 Score=97.85 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=65.3
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcc
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVP 379 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~ 379 (415)
.+.+++++.+ +++.|. ++.||+||.|+ ++.|.++.||++|.|++++.|.++++++++.++.++.+. +.++++
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~--- 91 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG--- 91 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---
Confidence 3445555555 455554 78899999998 699999999999999999999999999998888887764 455555
Q ss_pred eEeCCCCEEeeeEECCC
Q 014953 380 VGIGENTKIKYEQLKPI 396 (415)
Q Consensus 380 ~~Ig~~~~i~~~~i~~~ 396 (415)
+.||+++.+.+++|+++
T Consensus 92 ~~Ig~~~~i~~s~ig~~ 108 (193)
T cd03353 92 VHIGNFVEIKKSTIGEG 108 (193)
T ss_pred CEECCcEEEecceEcCC
Confidence 55555555444444333
No 121
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.02 E-value=7.6e-10 Score=101.70 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=46.7
Q ss_pred eEEccCcEECCCcEE-eecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 338 SVVGIRSRINANVHL-KDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 338 svig~~~~ig~~~~i-~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
++||++|.|++++.| .+|+|++++.+..++.+. +.++++ |.||.++.|. ++.||+++.|+.++.+.+.|-+++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~---~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~ 179 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDY---AIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYV 179 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCC---cEECCcceECCCcEECCCCEECcCCEEeeecCCCe
Confidence 555555555555555 345555555555554443 344555 6666666666 788888888888888877776665
Q ss_pred c
Q 014953 414 L 414 (415)
Q Consensus 414 ~ 414 (415)
+
T Consensus 180 ~ 180 (254)
T cd03351 180 I 180 (254)
T ss_pred E
Confidence 4
No 122
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.02 E-value=8.2e-10 Score=89.21 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
++.||++|.|+ ++.| .+++||++|.|++++.+.++.+.+.. +..++.+. +.++++ |.||.++.+. ++.|+++
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~ 91 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWELKGTTVKRG---ASIGANATILPGVTIGEY 91 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-cccccccCCcEECCC---cEECcCCEEeCCcEECCC
Confidence 67778888887 5666 47888888888888888776554432 22222222 345555 8888888887 7999999
Q ss_pred eEEcCCcccCcccccccc
Q 014953 397 CHIVETKYDSSTISRFSL 414 (415)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~ 414 (415)
+.|++++...+.+..+++
T Consensus 92 ~~i~~~~~v~~~i~~~~~ 109 (119)
T cd03358 92 ALVGAGAVVTKDVPPYAL 109 (119)
T ss_pred CEEccCCEEeCcCCCCeE
Confidence 999999888777766654
No 123
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.01 E-value=7.8e-10 Score=101.83 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred ceECCCCEEc-ceEEee--------eEEccCcEECCCcEEe-ecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe
Q 014953 322 SIISHGSFIT-SSFIEH--------SVVGIRSRINANVHLK-DTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~--------svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.||++|.|+ +++|.+ ++||++|.|++++.|. +|+|++++.+..++.+. ..++++ |.||.++.|.
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~---~~Ig~~~~i~ 157 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDY---AIIGGLTAVH 157 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCc---EEEeecceec
Confidence 4455555555 344432 3566666666666665 45566666565555443 355666 7788888887
Q ss_pred -eeEECCCeEEcCCcccCcccccccc
Q 014953 390 -YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.||+++.|++++.+.+.+-+|++
T Consensus 158 ~~v~Ig~~~~Ig~gs~V~~di~~~~~ 183 (262)
T PRK05289 158 QFVRIGAHAMVGGMSGVSQDVPPYVL 183 (262)
T ss_pred CCCEECCCCEEeeecceeccCCCCeE
Confidence 8999999999999999999988775
No 124
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.01 E-value=1.5e-09 Score=104.25 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=9.9
Q ss_pred eeeeeEEEEeHHHH
Q 014953 220 IASMGVYLFKKEIL 233 (415)
Q Consensus 220 l~~~Giyi~~~~~l 233 (415)
...++.+++++++.
T Consensus 52 ~~~A~a~Iv~~d~~ 65 (343)
T PRK00892 52 TTKAGAVIVSPDDA 65 (343)
T ss_pred ccCCeEEEechhhh
Confidence 35678888888653
No 125
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.01 E-value=9.7e-10 Score=101.21 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-------------cEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------TMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-------------sii 357 (415)
.++|.+.+.+++.+++++.| +.+.|. ++.||++|.|+ ++.|. +++||++|.|++++.|.+ ..|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 34555555555656555555 445553 56667777776 45554 577777777777777753 667
Q ss_pred eCCccccchhHHH
Q 014953 358 LGADFYETDAEVA 370 (415)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (415)
++++.|.+++.+.
T Consensus 84 G~~~~I~e~~~I~ 96 (262)
T PRK05289 84 GDNNTIREFVTIN 96 (262)
T ss_pred CCCCEECCCeEEe
Confidence 7776666666553
No 126
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.00 E-value=1.3e-09 Score=95.45 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=55.6
Q ss_pred cCCCCCccccCccCCCeee-cCCcccc----ceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCcccc
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~~ 364 (415)
+++++.+...+.|++++.| .++.|+. +.||++|.|+ +|.| .+|+||++|+||+++.|.+|+|+++
T Consensus 19 I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~---- 94 (196)
T PRK13627 19 VHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD---- 94 (196)
T ss_pred ECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC----
Confidence 3444444444445555555 4454431 2344444444 3433 2577777787877777777777777
Q ss_pred chhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 365 TDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 365 ~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
|.||.++.+. +++||+++.|++++.+.+
T Consensus 95 ---------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~ 123 (196)
T PRK13627 95 ---------------ALVGMNSVIMDGAVIGEESIVAAMSFVKA 123 (196)
T ss_pred ---------------CEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence 6777777765 677777777777775554
No 127
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.00 E-value=7.9e-10 Score=101.58 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=18.6
Q ss_pred cceECCCCEEc-ceEEe-------------eeEEccCcEECCCcEEe
Q 014953 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLK 353 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-------------~svig~~~~ig~~~~i~ 353 (415)
++.||++|+|+ ++.|. +++||++|+|++++.|.
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIH 93 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEe
Confidence 35555555555 35553 45666666666666664
No 128
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=7.8e-10 Score=110.78 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=78.1
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEee-cEEeCCc-----------
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD-TMMLGAD----------- 361 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~-sii~~~~----------- 361 (415)
+.+...+...+.|++++.| .++.|.+++||++|+|+ ++.+.+|+|+++|.||+++.+.. +.+++++
T Consensus 277 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~ 356 (459)
T PRK14355 277 IYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKI 356 (459)
T ss_pred EeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCC
Confidence 3444445555566666666 66777788999999998 68888888888888876666643 3333333
Q ss_pred -----------------------cccchhHH---------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 362 -----------------------FYETDAEV---------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 362 -----------------------~~~~~~~~---------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.|+.++.+ .+.++++ |.||.++.+. ++.||+++.|++++.+.+.
T Consensus 357 ~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~ 433 (459)
T PRK14355 357 VMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDD---VFVGSDVQFVAPVTVGRNSLIAAGTTVTKD 433 (459)
T ss_pred EECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCC---eEEcCCCEEeCCcEECCCCEECCCCEEccc
Confidence 33333211 1234555 6777777666 7889999999999988888
Q ss_pred cccccc
Q 014953 409 ISRFSL 414 (415)
Q Consensus 409 ~~~~~~ 414 (415)
+.++++
T Consensus 434 v~~~~~ 439 (459)
T PRK14355 434 VPPDSL 439 (459)
T ss_pred CCCCcE
Confidence 877765
No 129
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.00 E-value=6.4e-10 Score=102.18 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=39.0
Q ss_pred EEccCcEECCCcEE-eecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 339 VVGIRSRINANVHL-KDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 339 vig~~~~ig~~~~i-~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+||++|.|+.++.| .+|.|++++.+..++.+. +.++++ |.||.++.|. ++.|++++.|++++.+.+.|-++++
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~---~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~ 179 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDY---AIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGL 179 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCC---cEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcE
Confidence 44444444444444 334444444444443332 233444 5555555555 5677777777777777777766654
No 130
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.99 E-value=1.1e-09 Score=107.09 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=70.5
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
++++++.+ ..+.|+++|.|.+ .+.+|+||++|+|+ ++.|++|+|+++|+||++++|.+|+++++++|+.++.+.
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~--- 358 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIG--- 358 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEc---
Confidence 34444444 3455666666632 45689999999999 799999999999999999999999999999998875443
Q ss_pred hCCCc-ceEeCCCCEEe-eeEEC
Q 014953 374 AEGRV-PVGIGENTKIK-YEQLK 394 (415)
Q Consensus 374 ~~~~~-~~~Ig~~~~i~-~~~i~ 394 (415)
.+.. |..||+++.|. +++||
T Consensus 359 -~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 359 -GGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -CCCceeEEEeCCCCCCCCcEeC
Confidence 2222 46688888776 66664
No 131
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.99 E-value=1.9e-09 Score=91.17 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=50.0
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEee-----eEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~~-----svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++.+.+.....+++++.| +++.|. .++||++|.|+ ++.|.. ++||++|.|++++.|.++++++++.+
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~I 86 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLI 86 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEE
Confidence 44555555555566666666 455554 35788888888 577765 58888888888888888888888444
Q ss_pred cch
Q 014953 364 ETD 366 (415)
Q Consensus 364 ~~~ 366 (415)
+.+
T Consensus 87 g~~ 89 (153)
T cd04645 87 GMG 89 (153)
T ss_pred CCC
Confidence 433
No 132
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.96 E-value=1.9e-09 Score=98.52 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=24.1
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.||.++.|. .+.||+++.|++++.+.+.+-+|++
T Consensus 144 a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 144 AIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179 (255)
T ss_pred eEEeCCCEECCCCEECCCcEECCCceEeccCCCCeE
Confidence 4455555554 5677777777777778888888775
No 133
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.95 E-value=2.6e-09 Score=79.69 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=51.8
Q ss_pred ECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 324 ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|++++.|+ ++.| .+++|+++|.||++++|.+|+++++ +.|++++.+.+|++++++.|++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34455554 3444 3799999999999999999999999 8999999999999999999998
Q ss_pred Cccc
Q 014953 402 TKYD 405 (415)
Q Consensus 402 ~~~~ 405 (415)
+...
T Consensus 63 ~~~~ 66 (80)
T cd05824 63 WTRL 66 (80)
T ss_pred CcEE
Confidence 8643
No 134
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=1.7e-08 Score=86.47 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=139.3
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
+++.-|+|+|.|.++|. ..|-+.+++|+ |||.|+++++.+++ |++|+|-+ ..+.+.+.-.+ +|.
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~---yga--- 65 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK---YGA--- 65 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH---hCc---
Confidence 45677999999999999 57999999999 99999999999987 56665554 34445444332 221
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~ 162 (415)
. +.+.++..- ..+ ...|.+++.++.+.... ..+.++++.+-. ....++++.++.+.+++.+-.+.
T Consensus 66 ---k-~~~~Rp~~L----A~D-~ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 66 ---K-VFLKRPKEL----ASD-RASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred ---c-ccccCChhh----ccC-chhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 1 112222111 111 13455677777766654 135577777776 44567999999999988887888
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
+.+.+. .-|-.... ++|.+..+.+.+.... +++..-..+..+..+|+++.+.|.. .
T Consensus 133 a~e~e~---~p~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEH---HPYKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred Eeeccc---chHHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 777654 22222233 3477877777664322 1221123466778899999987742 1
Q ss_pred CCCcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhhc
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~l 287 (415)
...| ......|..+. ..+||++..|+..|+..+.
T Consensus 189 -~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 189 -DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIF 223 (228)
T ss_pred -Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhh
Confidence 1111 12334444443 4789999999999988664
No 135
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.95 E-value=2.7e-09 Score=91.52 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=72.3
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-----cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEee-cEEeCCc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKD-TMMLGAD 361 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-----~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~-sii~~~~ 361 (415)
++++++.+.....++++++| +++.|. ++.||++|.|+ ++.+. ++.||++|.|++++.|.+ +.|++++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~ 89 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC 89 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence 34555555555556666666 555553 36788888888 56663 577888888888888877 7778887
Q ss_pred cccchhHHH-hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 362 FYETDAEVA-SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 362 ~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
.++.++.+. +.++++ |.||.++.|.++.|++++.+++++.+.
T Consensus 90 ~Ig~~~~I~~~~Ig~~---~~Ig~~s~i~~~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 90 FIGFRSVVFNAKVGDN---CVIGHNAVVDGVEIPPGRYVPAGAVIT 132 (167)
T ss_pred EECCCCEEECCEECCC---CEEcCCCEEeCCEeCCCCEECCCCEEc
Confidence 666666554 344555 666666666666667777776666544
No 136
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.94 E-value=1.4e-09 Score=108.96 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=62.8
Q ss_pred CccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH------------
Q 014953 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA------------ 370 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~------------ 370 (415)
+.+++++.| +++.|.+++||++|+|+ ++.|.+|+||++|.||++++|. +++++++++|+..+++.
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 367 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANH 367 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecc
Confidence 344455555 45555666667777776 4666666666666666666665 35555554444433221
Q ss_pred -------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 -------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 -------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ +.||.+|.+. ++.||+++.|++++.+.+.+.++++
T Consensus 368 ~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~---~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~ 440 (456)
T PRK14356 368 LTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEG---AFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSL 440 (456)
T ss_pred cccccCeEECCCCEECCCceeeccccccCCCCEECCC---cEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcE
Confidence 122222 4455555554 6778888888888888888777764
No 137
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.94 E-value=2.3e-09 Score=102.00 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.|.. .+++|+|+++... ..+.. ..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~---~~~~~----~~------- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ---WQGTP----LE------- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH---hhhcc----cc-------
Confidence 6789999999999997 69999999999 999999988876 4789988875421 11100 00
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHH
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h 152 (415)
.+.++..... ..|...+|+.++.... .+.+++++||+ +...+ +..+++.+
T Consensus 219 -~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 -NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred -CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0223222221 2599999999987653 35789999999 55655 56776654
No 138
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.93 E-value=2.7e-08 Score=97.98 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=124.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhcc--------------CCcEEEEEcccChhHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GINKVYILTQYNSASL 69 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~--------------gi~~I~vv~~~~~~~i 69 (415)
.++.+||||||.||||+ ...||+|+||+ |+ ||++++++++... .+.-+++...+.++.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 46899999999999996 68999999994 88 9999999999864 2444444455777889
Q ss_pred HHHHHhhccCCCCc---c-cCCceEEEecCc-cCC--CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCC
Q 014953 70 NRHLARAYNYGSGV---T-FGDGCVEVLAAT-QTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGD 138 (415)
Q Consensus 70 ~~~l~~~~~~~~~~---~-~~~~~v~i~~~~-~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD 138 (415)
.+|+.+...|+-.. . |....+..+... ... .+.+ .-.|.|.|+-...... .+++....+.+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 99987543232110 0 000001111100 000 0000 1124577665544321 1222222346889999999
Q ss_pred eecc-cChHHHHHHHHHcCC-cEEEEEEEcCCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccc
Q 014953 139 HLYR-MDYMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (415)
Q Consensus 139 ~i~~-~~l~~~l~~h~~~~~-~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (415)
.+.. .---.++-++..+++ ++.-.+.+... .+.-|++.... .-.|+.+.|-+....... +.....
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~----------~~~~g~ 328 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNND----------ELLTGE 328 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcc----------cccCCe
Confidence 9643 333467777777777 65554443332 24457665532 226788877654322100 000111
Q ss_pred cccceeeeeEEEEeHHHHHHHHh
Q 014953 216 EKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
......++..++|+-++|+++.+
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ecccccceEEEEEEHHHHHHHhh
Confidence 22356778999999999987654
No 139
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.92 E-value=3.5e-09 Score=83.16 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=64.5
Q ss_pred cCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhh
Q 014953 296 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~ 374 (415)
+.+++.+ ..+.+++++.+.++.+.+++|+++|+|+ ++.|.+|+|++++.||++++|.+|+++++
T Consensus 4 i~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~-------------- 68 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN-------------- 68 (104)
T ss_pred ecCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC--------------
Confidence 3444555 3567888888877888999999999999 79999999999999999999999999999
Q ss_pred CCCcceEeCCCCEEeee
Q 014953 375 EGRVPVGIGENTKIKYE 391 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~~~ 391 (415)
+.||+++++.+.
T Consensus 69 -----~~Ig~~~~v~~~ 80 (104)
T cd04651 69 -----VVIPDGVVIGGD 80 (104)
T ss_pred -----CEECCCCEECCC
Confidence 788888887743
No 140
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.91 E-value=4e-09 Score=89.35 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=52.6
Q ss_pred cceECCCCEEc-ceEEee----eEEccCcEECCCcEE-----eecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-
Q 014953 321 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHL-----KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK- 389 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i-----~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~- 389 (415)
++.||++|.|+ ++.|.. +.||++|.|+++|.| .+++|+++++|+.++.+. + +.||++|.|.
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-----~---~~Ig~~~~Ig~ 89 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH-----G---CTIGRNALVGM 89 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE-----C---CEECCCCEECC
Confidence 56777777777 566653 788888999888888 568888886665555332 1 5666666666
Q ss_pred eeEECCCeEEcCCcc
Q 014953 390 YEQLKPICHIVETKY 404 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~ 404 (415)
+|+|+++++|++++.
T Consensus 90 ~~~I~~g~~Ig~~~~ 104 (155)
T cd04745 90 NAVVMDGAVIGEESI 104 (155)
T ss_pred CCEEeCCCEECCCCE
Confidence 666666666666654
No 141
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.91 E-value=8.2e-09 Score=80.41 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=62.2
Q ss_pred cCCCeee-cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 308 NLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 308 i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
+++.+.+ +++.+ ..++||++|.|+ ++.|. ++.||++|.||. +|.+|+++++ +.|+
T Consensus 14 ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~ 72 (101)
T cd05635 14 IGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQ 72 (101)
T ss_pred ECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEec
Confidence 3334444 33433 357788888887 57665 588888888875 6889999999 8999
Q ss_pred CCCEEeeeEECCCeEEcCCcccCcc
Q 014953 384 ENTKIKYEQLKPICHIVETKYDSST 408 (415)
Q Consensus 384 ~~~~i~~~~i~~~~~i~~~~~~~~~ 408 (415)
.+++|.+++|++++.|++++..|.-
T Consensus 73 ~~~~lg~siIg~~v~ig~~~~~~~~ 97 (101)
T cd05635 73 HDGFLGHSYLGSWCNLGAGTNNSDL 97 (101)
T ss_pred CcCEEeeeEECCCCEECCCceeccc
Confidence 9999999999999999999876653
No 142
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.91 E-value=3.8e-09 Score=90.60 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEe-----ecEEeCCccccchhHHH--hh
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK-----DTMMLGADFYETDAEVA--SL 372 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~--~~ 372 (415)
+++++.| +++.+. ++.||++|.|+ ++.|. ++.||++|.|++++.|. ++.|++++.+..++.+. +.
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 3444444 344443 56667777776 45553 47899999999999995 57788888888877664 56
Q ss_pred hhCCCcceEeCCCCEEeeeEECCCeEEcCCcccCc
Q 014953 373 LAEGRVPVGIGENTKIKYEQLKPICHIVETKYDSS 407 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~ 407 (415)
++++ |.||.+|.|.++.||+++.|++++...+
T Consensus 85 Ig~~---~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 85 IGDN---CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ECCC---CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 7888 8899999999999999999999887653
No 143
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.91 E-value=1.7e-09 Score=108.24 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=68.4
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEe
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGI 382 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~I 382 (415)
+++++.| +++.|. ++.||++|.|+ ++.|.+|+||++|.|++++.|.+++|++++.|+.++.+. +.++++ |.|
T Consensus 264 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~I 340 (451)
T TIGR01173 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG---VHI 340 (451)
T ss_pred ECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---cEE
Confidence 4444555 455554 68899999999 688999999999999999999999999999888887664 455655 555
Q ss_pred CCCCEEee-----------------eEECCCeEEcCCcc
Q 014953 383 GENTKIKY-----------------EQLKPICHIVETKY 404 (415)
Q Consensus 383 g~~~~i~~-----------------~~i~~~~~i~~~~~ 404 (415)
|++|.+.+ |.||+++.|++++.
T Consensus 341 g~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 341 GNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTI 379 (451)
T ss_pred ccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeE
Confidence 55544433 55556666666543
No 144
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.90 E-value=5.4e-09 Score=96.05 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=41.5
Q ss_pred cceECCCCEEc-ceEEe-------------eeEEccCcEECCCcEEee--------cEEeCCccccchhHHH--hhhhCC
Q 014953 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVA--SLLAEG 376 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-------------~svig~~~~ig~~~~i~~--------sii~~~~~~~~~~~~~--~~~~~~ 376 (415)
++.||++|+|+ ++.|. +++||++|.|++++.|.. ++|++++.+..++.+. +.++++
T Consensus 46 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~ 125 (254)
T TIGR01852 46 HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNH 125 (254)
T ss_pred eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCC
Confidence 46666666666 45553 467777777777777753 3455555444444332 233333
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
|.|+.++.+. +|+||+++.|+.++
T Consensus 126 ---~~i~~~~~i~~~~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 126 ---VILANNATLAGHVEVGDYAIIGGLV 150 (254)
T ss_pred ---CEECCCCEECCCcEECCCcEEeccC
Confidence 3333333333 34444444444444
No 145
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=4.2e-09 Score=98.99 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=60.4
Q ss_pred cccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceE
Q 014953 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (415)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~ 381 (415)
..++.+..+|.|.+ .+.+|+|+.|++|+ ++.|++|+|+++|.||++|+|+++||..+ |.
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~-------------------v~ 353 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN-------------------VV 353 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC-------------------cE
Confidence 35677889999988 88999999999999 79999999999999999999999999999 67
Q ss_pred eCCCCEEe
Q 014953 382 IGENTKIK 389 (415)
Q Consensus 382 Ig~~~~i~ 389 (415)
|++|++|.
T Consensus 354 I~~g~~i~ 361 (393)
T COG0448 354 IGEGVVIG 361 (393)
T ss_pred eCCCcEEc
Confidence 77777776
No 146
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.89 E-value=2.4e-07 Score=90.52 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=184.0
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~ 79 (415)
..++-+|.||||.||||+ .+.||.|+|+.+..++++.+++++.. .|.. ..++-+++. ++...+++.+...+
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~ 153 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS 153 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC
Confidence 357889999999999998 78999999995433899888887754 3443 446666654 46788888763211
Q ss_pred CCC-cccCCceEEEecC-ccC----CC-CCCC-ccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCCeecccChHHHH
Q 014953 80 GSG-VTFGDGCVEVLAA-TQT----PG-EAGK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (415)
Q Consensus 80 ~~~-~~~~~~~v~i~~~-~~~----~~-~~~~-~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (415)
... ..|....+.-+.. ... .. .... -.+.|.|+....... .+++....+.+.+.+.+.|.+...-=..++
T Consensus 154 ~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~l 233 (469)
T PLN02474 154 NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKIL 233 (469)
T ss_pred ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHH
Confidence 111 1111110100100 000 00 0001 124466655433221 122222234689999999997544334688
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC--CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
.+|..+++++++=+.+...+. ..-|.++. .+| +++++.+-|+..... + .........+++.++
T Consensus 234 g~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~---f----------~~~~kf~~fNtnn~w 298 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNE---F----------KSIEKFKIFNTNNLW 298 (469)
T ss_pred HHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHh---h----------cccccceeeeeeeEE
Confidence 888999999888776654321 33455553 345 477777766533210 0 011234678999999
Q ss_pred EeHHHHHHHHhhhCCCCCcc-------cccchh------hhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhhcCCCCC
Q 014953 228 FKKEILLNLLRWRFPTANDF-------GSEIIP------ASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPM 292 (415)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~~~-------~~~~l~------~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~~~~ 292 (415)
|+-++++++++.......-. ...+++ ..+.- ....++.++ ..|..+.+..|++.+..++.....+
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~ 378 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDG 378 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccC
Confidence 99999988765321100000 000011 11110 123333332 2377888888888888776543322
Q ss_pred CCccCCCCCcccc--CccCCCeeecCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH
Q 014953 293 FSFYDATKPIYTS--RRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 370 (415)
Q Consensus 293 ~~~~~~~~~~~~~--~~i~~~~~i~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~ 370 (415)
.....+.....+. ..++|....-+--....- +--+.++ ..+=.|--+|+.|+++++.+.++..+.
T Consensus 379 ~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~-~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~--------- 445 (469)
T PLN02474 379 FVIRNKARTNPSNPSIELGPEFKKVANFLSRFK-SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK--------- 445 (469)
T ss_pred eEEecCcccCCCCCcEEECcccccHHhHHHhcC-CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC---------
Confidence 1111111011111 112211100000000000 2223332 123455557888888888887766552
Q ss_pred hhhhCCCcceEeCCCCEEeeeEECCC
Q 014953 371 SLLAEGRVPVGIGENTKIKYEQLKPI 396 (415)
Q Consensus 371 ~~~~~~~~~~~Ig~~~~i~~~~i~~~ 396 (415)
+..+..|-+|++++++++..+
T Consensus 446 -----~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 446 -----SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred -----CCCeeecCCCcEecceeeccc
Confidence 111256888888887777654
No 147
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.89 E-value=8.3e-09 Score=90.04 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=73.5
Q ss_pred cCCCeee-cCCcc-ccceECCCCEEc-ceEEe----eeEEccCcEECCCcEE-----eecEEeCCccccchhHHH-hhhh
Q 014953 308 NLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHL-----KDTMMLGADFYETDAEVA-SLLA 374 (415)
Q Consensus 308 i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i-----~~sii~~~~~~~~~~~~~-~~~~ 374 (415)
++++++| +++.+ .++.||++|.|+ ++.|. ..+||++|.||++|.| .+|+|+++++|+.++.+. +.++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg 90 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG 90 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence 3444444 33333 367788888887 67775 4689999999999999 569999999998888664 5677
Q ss_pred CCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 375 EGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
++ |.||.++.+. +++||+++.|++++.+.+
T Consensus 91 ~~---~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 91 RN---ALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred CC---CEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 77 8888888886 788888888888876654
No 148
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.87 E-value=6.4e-09 Score=93.83 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCCccccCccCCCeeecCCcc-ccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEe---------ecEEeCCccccc
Q 014953 298 ATKPIYTSRRNLPPSKIDDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK---------DTMMLGADFYET 365 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~---------~sii~~~~~~~~ 365 (415)
|.+.+..++.+++++.+....+ .++.||++|.|. +++| .++.||++|+|+.++.|. +++|+++++|++
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 3344445555555555521122 256788888887 4666 357777777777777773 457777765555
Q ss_pred hhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 366 DAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++.+ .+| +.||++|.|. +++|+++++|.+.+
T Consensus 185 ~a~I----~~G---V~IG~gavIGaGavI~~~~~I~~~~ 216 (269)
T TIGR00965 185 RSEI----VEG---VIVEEGSVISMGVFIGQSTKIYDRE 216 (269)
T ss_pred CCEE----cCC---CEECCCCEEeCCCEECCCCEEeccc
Confidence 5443 223 5555555555 55555555555444
No 149
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.85 E-value=5e-09 Score=100.57 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=4.8
Q ss_pred EccCcEECCCcEE
Q 014953 340 VGIRSRINANVHL 352 (415)
Q Consensus 340 ig~~~~ig~~~~i 352 (415)
||++|.|++++.|
T Consensus 169 Ig~~~~I~~~~~I 181 (343)
T PRK00892 169 IGNRVIIHSGAVI 181 (343)
T ss_pred ECCCCEECCCCEE
Confidence 3333333333333
No 150
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.84 E-value=3.9e-09 Score=106.01 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=52.8
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhH
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAE 368 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~ 368 (415)
+.+...+.+.+.|++++.| +++.|.+|+||++|+|+ ++.|.+++||++|.||+++.|. +++|+++++|.+.+.
T Consensus 279 I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 279 IEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred EeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 3444444445555666666 56777788888888888 6888888888888888888886 577777777777544
No 151
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.83 E-value=2e-08 Score=87.93 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEee-----cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 320 VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD-----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~-----sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
.++.||++|.|+ +++|.. .+|+++|.||++|.|.. ++|+++ +.||.++.+.
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~ 87 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILH 87 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEe
Confidence 356667777776 566643 47788888888887744 667777 5555555555
Q ss_pred eeEECCCeEEcCCcc
Q 014953 390 YEQLKPICHIVETKY 404 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~ 404 (415)
+|+|++++.|+.++.
T Consensus 88 g~vIG~~v~IG~ga~ 102 (196)
T PRK13627 88 GCVIGRDALVGMNSV 102 (196)
T ss_pred eEEECCCCEECcCCc
Confidence 555555555555543
No 152
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.83 E-value=1e-08 Score=91.20 Aligned_cols=34 Identities=18% Similarity=-0.047 Sum_probs=17.9
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||.++.+. ++.|++++.|++++.+.+.+.+++
T Consensus 157 ~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~ 191 (205)
T cd03352 157 VIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGE 191 (205)
T ss_pred eEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCC
Confidence 4444444444 555555555555555555554443
No 153
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.83 E-value=1.8e-08 Score=83.65 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~ 354 (415)
+...+..++.+.+++.+ .++.+. ++.||++|.|+ ++.| .++.||++|.|++++.|.+
T Consensus 6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg 66 (139)
T cd03350 6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGG 66 (139)
T ss_pred CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECC
Confidence 33444444445554444 333332 55677777776 4655 4678888888888877764
No 154
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.82 E-value=1.7e-08 Score=84.72 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=70.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
+++|++.+..++.|+.++.+ .++.++ .-.||++|-|. ++++. .+.||++|+||.+|.|-+|.|.++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 66677777777777777777 666664 56789999998 57763 589999999999999999999999
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.||=|+.|- +|.||+++.|++++-+
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV 122 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALV 122 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcc
Confidence 6777777765 4777777777777643
No 155
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.82 E-value=9.9e-09 Score=101.64 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=56.1
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEcc-------------------CcEECCCcEEeecEEeCCcccc
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI-------------------RSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~-------------------~~~ig~~~~i~~sii~~~~~~~ 364 (415)
.+.|+++|.+.++.|++|+||++|+|+ ++.|++|+|+. +|.||++|.|.+|++++++.|+
T Consensus 308 ~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~ 387 (429)
T PRK02862 308 ESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIG 387 (429)
T ss_pred eCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEEC
Confidence 467888888877888999999999998 79999999986 7999999999999999996555
Q ss_pred chhHH
Q 014953 365 TDAEV 369 (415)
Q Consensus 365 ~~~~~ 369 (415)
+++.+
T Consensus 388 ~~~~~ 392 (429)
T PRK02862 388 NNVRI 392 (429)
T ss_pred CCcEE
Confidence 55444
No 156
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.82 E-value=1.5e-08 Score=86.50 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeec-----------EEeCCccccchhHHH
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT-----------MMLGADFYETDAEVA 370 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~s-----------ii~~~~~~~~~~~~~ 370 (415)
++.+.+ +++.+ .++.||++|.|+ ++.|. .++||++|.|++++.|.++ .|++++.+..++.+.
T Consensus 3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~ 82 (164)
T cd04646 3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE 82 (164)
T ss_pred CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence 344444 33333 367788888887 57674 3699999999999999876 355666666666553
Q ss_pred -hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc--ccccc
Q 014953 371 -SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST--ISRFS 413 (415)
Q Consensus 371 -~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~--~~~~~ 413 (415)
+.++++ |.||.+|.|. +++|++++.|++++.+.+- +..++
T Consensus 83 ~~~IGd~---~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~ 126 (164)
T cd04646 83 ALKIGNN---NVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENT 126 (164)
T ss_pred eeEECCC---CEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCe
Confidence 466777 7778777775 7777888888777766553 54443
No 157
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.81 E-value=7.2e-09 Score=103.55 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=51.8
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHH
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEV 369 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~ 369 (415)
.+.|++++.+ +++.|. ++.||++|+|+ ++.|.+|+||++|+||+++.|. +|+|++++.|++++.+
T Consensus 268 ~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i 336 (446)
T PRK14353 268 DTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV 336 (446)
T ss_pred ceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE
Confidence 4455556666 455554 67788888888 5888899999999999999998 7999999998888755
No 158
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.80 E-value=2.6e-08 Score=84.88 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=34.1
Q ss_pred ceECCCCEEc-ceEEee-------------eEEccCcEECCCcEEeecEEeCCccccch
Q 014953 322 SIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHLKDTMMLGADFYETD 366 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~-------------svig~~~~ig~~~~i~~sii~~~~~~~~~ 366 (415)
+.||++|.|+ ++.|.. ++||++|.|++++.+.++.++++++|+.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~ 101 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKN 101 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCC
Confidence 5677777776 566643 57999999999999999999888555554
No 159
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.78 E-value=1.4e-08 Score=99.94 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=52.2
Q ss_pred ccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
+.+.++++|.|.++.|.+|+||++|+|+ ++.|++|+|+++|+||++|+|.+|+++++
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 4567788888877888899999999999 79999999999999999999999999999
No 160
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.78 E-value=3.9e-08 Score=83.05 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=56.8
Q ss_pred ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEee-----cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 320 VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD-----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~-----sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
.++.||++|.|+ ++.|.. .+||++|.|+++|.|.. ++|++++++..++.+. + +.||++|.|.
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----~---~~Ig~~~~Ig 88 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----G---AKVGNYVIVG 88 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----C---cEECCCCEEc
Confidence 367788888888 677765 49999999999999986 7888886665555432 1 5666666666
Q ss_pred -eeEECCCeEEcCCccc
Q 014953 390 -YEQLKPICHIVETKYD 405 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~ 405 (415)
++++..+++|++++..
T Consensus 89 ~~~~i~~~~~Ig~~~~v 105 (154)
T cd04650 89 MGAILLNGAKIGDHVII 105 (154)
T ss_pred CCCEEeCCCEECCCCEE
Confidence 6666666666666654
No 161
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.77 E-value=4.7e-08 Score=82.64 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEeec-----EEeCCccccchhHHH-hhhhC
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT-----MMLGADFYETDAEVA-SLLAE 375 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~s-----ii~~~~~~~~~~~~~-~~~~~ 375 (415)
++++++ +++.| .++.||++|.|+ +++|.. ++||++|.|+++++|.++ +|++++.+..++.+. +.+++
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 82 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGD 82 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECC
Confidence 445555 44444 367788888888 566653 599999999999999984 999999998887664 35566
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
+ +.||.++.+. +++|++++.|++++.+.+
T Consensus 83 ~---~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 83 N---CLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred C---CEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 6 7777777776 777777877777765544
No 162
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.77 E-value=1.8e-08 Score=95.46 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=19.1
Q ss_pred eCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 382 IGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 382 Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
||.++.|. ++.||+++.|+.++.+.+.+.+++
T Consensus 262 ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~ 294 (324)
T TIGR01853 262 IGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPG 294 (324)
T ss_pred EccccccccCCEECCCCEEccCCEeCCcCCCCc
Confidence 33333333 566677777777777777666554
No 163
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.77 E-value=7.7e-09 Score=94.30 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=33.8
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.|+++ |.||.||.|. ++.||+++.|++++.+.+.+-+++.
T Consensus 195 ~IGd~---V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~ 235 (273)
T PRK11132 195 KIREG---VMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTT 235 (273)
T ss_pred EECCC---cEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcE
Confidence 44555 8999999997 9999999999999998888877764
No 164
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.77 E-value=8e-09 Score=103.43 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=70.0
Q ss_pred ccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceE
Q 014953 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVG 381 (415)
Q Consensus 307 ~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~ 381 (415)
.+++++.| +++.|. +++||++|.|+ ++.|.+|+||++|.|++++.|.+|+++++++|++++.+. +.++++ +.
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~ 343 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG---AH 343 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC---ce
Confidence 35556666 566665 68999999999 699999999999999999999999999998888887664 344555 44
Q ss_pred eCCCCEEe-----------------eeEECCCeEEcCCc
Q 014953 382 IGENTKIK-----------------YEQLKPICHIVETK 403 (415)
Q Consensus 382 Ig~~~~i~-----------------~~~i~~~~~i~~~~ 403 (415)
||+++.++ +|.||+++.|++++
T Consensus 344 ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 344 VGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred eccceeeeceeeCCCCccCccccccccEECCCCEEcCCe
Confidence 55544433 35666666666665
No 165
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.75 E-value=4.7e-08 Score=79.78 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=58.7
Q ss_pred CCccccCccCCCeee-cCCccc-cceECCCCEEcceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCC
Q 014953 300 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~ 376 (415)
..+..++.+++++.+ +++.+. ++.||.+|.|.. .+ .+++|+.+|.||+++.|. +.+.++ ......++++
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~ 79 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR 79 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC
Confidence 344445555555555 444443 566666666642 23 358888888888888888 444333 0011233344
Q ss_pred CcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 377 RVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 377 ~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
|.||.|+.| +..||++++|++|+.+.
T Consensus 80 ---~~IG~ga~I-gv~IG~~~vIGaGsvV~ 105 (147)
T cd04649 80 ---CLLGANSGI-GISLGDNCIVEAGLYVT 105 (147)
T ss_pred ---CEECCCCEE-eEEECCCCEECCCCEEe
Confidence 888888888 78888888888887643
No 166
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.75 E-value=4.4e-08 Score=86.53 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=50.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEee
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~ 354 (415)
.+++.+.+. .+.+++++.| +++.+.++.||.+|.|+ ++.+.+++||++|.|+++++|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 456666664 4678888888 78888999999999999 69999999999999999999864
No 167
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.75 E-value=1.6e-08 Score=92.17 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=39.9
Q ss_pred cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
++.||++|+|+ ++.|. +++||++|+|++++.|.+ ++|++++.|+.++.+ .+| +.||++|+|.
T Consensus 132 Ga~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I----~~G---v~IGdgavIg 204 (272)
T PRK11830 132 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV----VEG---VIVEEGSVLG 204 (272)
T ss_pred CCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEE----cCC---CEECCCCEEc
Confidence 45566666666 35553 357777777777776653 566666555544333 222 4444444444
Q ss_pred -eeEECCCeEEcC
Q 014953 390 -YEQLKPICHIVE 401 (415)
Q Consensus 390 -~~~i~~~~~i~~ 401 (415)
+++|++++.|.+
T Consensus 205 ag~vV~~gt~I~~ 217 (272)
T PRK11830 205 MGVFLGQSTKIYD 217 (272)
T ss_pred CCCEEcCCeEECc
Confidence 444444444443
No 168
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.75 E-value=1.8e-08 Score=100.04 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred CccCCCeeecCCccccceECCCCEEc-ceEEeeeEEcc----------------C---cEECCCcEEeecEEeCCccccc
Q 014953 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI----------------R---SRINANVHLKDTMMLGADFYET 365 (415)
Q Consensus 306 ~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~----------------~---~~ig~~~~i~~sii~~~~~~~~ 365 (415)
+.++++|.|.++.|++|+||++|+|+ ++.|.+|+|+. + ++||++|+|.+++|++++.|++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~ 395 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGK 395 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECC
Confidence 67888888887788999999999999 79999999966 3 3899999999999999999998
Q ss_pred hhHHHhhhhCCCcceEeCCCCEEe-e-eEECCCeEEcCCcc
Q 014953 366 DAEVASLLAEGRVPVGIGENTKIK-Y-EQLKPICHIVETKY 404 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~~Ig~~~~i~-~-~~i~~~~~i~~~~~ 404 (415)
++.+....+-.+ +.++|++|.+. + ++||+++.|.+++.
T Consensus 396 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 435 (436)
T PLN02241 396 NVVIINKDGVQE-ADREEEGYYIRSGIVVILKNAVIPDGTV 435 (436)
T ss_pred CcEEecccccCC-ccccccccEEeCCEEEEcCCcEeCCCCC
Confidence 876653211111 25678888887 5 79999999988764
No 169
>PRK10502 putative acyl transferase; Provisional
Probab=98.72 E-value=4.5e-08 Score=85.07 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=62.4
Q ss_pred cccCccCCCeeecCCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccch----hHHH-hhh
Q 014953 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETD----AEVA-SLL 373 (415)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~~----~~~~-~~~ 373 (415)
..++.+.+++.+... .+..||++|.|+ ++.|. ...||++|.|++++.|... .|...+ .... ..|
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~-----~h~~~~~~~~~~~~~i~I 127 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTG-----SHDYSDPHFDLNTAPIVI 127 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECC-----CCCCcCCCcccccCCEEE
Confidence 334444455544110 145667777776 45553 5778888888877776421 111000 0001 133
Q ss_pred hCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 374 AEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+++ |.||.+|.|. ++.||+++.|++++.+.+.+.+++.
T Consensus 128 gd~---~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v 166 (182)
T PRK10502 128 GEG---CWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166 (182)
T ss_pred cCC---cEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcE
Confidence 444 8888888886 8999999999999988888888764
No 170
>PLN02296 carbonate dehydratase
Probab=98.72 E-value=6.6e-08 Score=88.62 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=76.0
Q ss_pred CccccCccCCCeeecCCccccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEe-----------ecEEeCCcccc
Q 014953 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK-----------DTMMLGADFYE 364 (415)
Q Consensus 301 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~-----------~sii~~~~~~~ 364 (415)
.+.+.+.+.+++.+. .++.||++|.|. +++|. +.+||++|.|+++|.|. +++|++++.|+
T Consensus 54 ~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG 129 (269)
T PLN02296 54 VVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIG 129 (269)
T ss_pred ccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEEC
Confidence 344444555555442 256667777776 56554 35899999999999995 68999999999
Q ss_pred chhHH-HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc--ccccc
Q 014953 365 TDAEV-ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST--ISRFS 413 (415)
Q Consensus 365 ~~~~~-~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~--~~~~~ 413 (415)
.++.+ .+.++++ |.||.++.|. ++.|++++.|++++.+.+. |..++
T Consensus 130 ~~avI~g~~Igd~---v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 130 HSAVLHGCTVEDE---AFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred CCceecCCEECCC---cEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 99876 4567777 8888888886 8888888888888866554 44444
No 171
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.71 E-value=4.3e-08 Score=90.27 Aligned_cols=128 Identities=17% Similarity=0.098 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEEC
Q 014953 273 IGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRIN 347 (415)
Q Consensus 273 i~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig 347 (415)
..+|.-.+....+++.+. ....-+.|.+.+.+.+.+.+++.+ +++.|. ++.||+||+|+ +++| .++.||++|.|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 445666666665555432 222334455555555555554444 344442 55556666665 4444 467777777777
Q ss_pred CCcEEee-cEEeCCccccchhHHHh--hhhCCCcceEeCCCCEE---eeeEECCCeEEcCCcc
Q 014953 348 ANVHLKD-TMMLGADFYETDAEVAS--LLAEGRVPVGIGENTKI---KYEQLKPICHIVETKY 404 (415)
Q Consensus 348 ~~~~i~~-sii~~~~~~~~~~~~~~--~~~~~~~~~~Ig~~~~i---~~~~i~~~~~i~~~~~ 404 (415)
+++.|.. +.|++++.|.+|+++.. +.+.+ +.+| +..+ .+.+|+++|.||++|.
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~---~~~g-~~Ki~q~g~V~Igd~VeIGanT~ 216 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVIGADGFGYAG---TAIG-WVKIPQIGRVIIGDDVEIGANTT 216 (338)
T ss_pred CCCEEecCcEECCceEECCCCEEccCcccccc---ccCC-ceEcceeceEEECCceEEcccce
Confidence 7777766 77777777777776664 33333 4566 3333 2788888888888875
No 172
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.70 E-value=8.3e-08 Score=70.90 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred ceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeE
Q 014953 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICH 398 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~ 398 (415)
+.||++|.|+ ++.|. +++||++|.|++++.|.++.... ......++++ +.||.+|.+. ++.|++++.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-------~~~~~~ig~~---~~v~~~~~i~~~~~ig~~~~ 70 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN-------EKNPTIIGDN---VEIGANAVIHGGVKIGDNAV 70 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC-------ccCCcEECCC---cEECCCCEEeCCCEECCCCE
Confidence 3567777777 46665 49999999999999998763321 0000111122 6777777776 677777777
Q ss_pred EcCCcc
Q 014953 399 IVETKY 404 (415)
Q Consensus 399 i~~~~~ 404 (415)
|++++.
T Consensus 71 i~~~s~ 76 (78)
T cd00208 71 IGAGAV 76 (78)
T ss_pred ECcCcE
Confidence 777654
No 173
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.70 E-value=3.3e-08 Score=97.79 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred ccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCc
Q 014953 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (415)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~ 361 (415)
.++.|+++|++.++.|++|+||++|+|+ ++.|++|+|+++|.||++++|.+|+|++++
T Consensus 326 ~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~ 384 (425)
T PRK00725 326 INSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGC 384 (425)
T ss_pred EeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCC
Confidence 4678889998888889999999999999 799999999999999999999999999994
No 174
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.69 E-value=3.3e-08 Score=89.00 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=70.6
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGAD 361 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~ 361 (415)
.+++.+.+...+.+++++.+ .++.|. +++||++|.|+ ++.|. +|+||++|.||+++.|.+ ++|++++
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v 167 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNV 167 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCc
Confidence 45677777778888899988 777775 79999999998 68884 899999999999999975 6777776
Q ss_pred cccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcC
Q 014953 362 FYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVE 401 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~ 401 (415)
+++.+ ++|.+++.|. +|+|++++.|..
T Consensus 168 ~IG~g-------------svI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 168 LIGAN-------------AVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred EECCC-------------CEEcCCCEECCCCEECCCCEEcc
Confidence 66655 4555555554 555555555543
No 175
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.68 E-value=3e-08 Score=99.93 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=49.6
Q ss_pred CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-hhhhCCCcceEe
Q 014953 306 RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA-SLLAEGRVPVGI 382 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~-~~~~~~~~~~~I 382 (415)
+.|+++|.| +++.|.+++||++|.|+++.+.+|+|+++|.||+++.+. +++|+++++++..+.+. +.++++ +.|
T Consensus 290 v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~---~~i 366 (482)
T PRK14352 290 TTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG---TKV 366 (482)
T ss_pred CEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC---cEE
Confidence 333333333 344444445555555544444555555555555555554 34444444444433321 233333 444
Q ss_pred CCCCEEeeeEECCCeEEcCCccc
Q 014953 383 GENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 383 g~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
+..+.+.+|+||+++.|++++..
T Consensus 367 ~~~~~i~~~~Ig~~~~IG~~~~i 389 (482)
T PRK14352 367 PHLTYVGDADIGEHSNIGASSVF 389 (482)
T ss_pred ccCceecccEECCCcEECCCcEE
Confidence 44455556788888888888643
No 176
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.68 E-value=3.5e-08 Score=98.92 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
++.||++|.|+ ++.|.+|+||++|.|+ ++.+.+++|++++.|+.++.+. +.++++ |.||.++.|.+++|++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEeeeEECCCC
Confidence 56778888887 6778888888888887 4677788888887777776554 355665 556655555444444444
Q ss_pred EE
Q 014953 398 HI 399 (415)
Q Consensus 398 ~i 399 (415)
.+
T Consensus 359 ~i 360 (458)
T PRK14354 359 KV 360 (458)
T ss_pred Ee
Confidence 33
No 177
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=5.2e-08 Score=93.81 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=55.5
Q ss_pred ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 320 VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
.+++||++|+|+ ++.|. +|+||++|+||++++|.+|+||++ |.||.+++|.+|+|+.++
T Consensus 260 gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~ 320 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENC 320 (358)
T ss_pred CCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCc
Confidence 578888888888 57774 699999999999999999999999 788888888888888888
Q ss_pred EEcC
Q 014953 398 HIVE 401 (415)
Q Consensus 398 ~i~~ 401 (415)
+|++
T Consensus 321 ~ig~ 324 (358)
T COG1208 321 KIGA 324 (358)
T ss_pred EECC
Confidence 8886
No 178
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.67 E-value=4.7e-08 Score=89.15 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=45.5
Q ss_pred ccCccCCCeee-cCCccccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcce
Q 014953 304 TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (415)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~ 380 (415)
+.+.++.+++| +++.|..+.|+.|+.|+ ++.| .++.||++|.||++++|.......+.. +......+.|+++ |
T Consensus 108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIgDn---v 183 (272)
T PRK11830 108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIEDN---C 183 (272)
T ss_pred CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEcCC---C
Confidence 33344444444 33433444455555555 3333 234444444444444444433333210 0000112455666 6
Q ss_pred EeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 381 GIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 381 ~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
.||.+|.|. +++||+++.|++++.+
T Consensus 184 ~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 184 FIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred EECCCCEEcCCCEECCCCEEcCCCEE
Confidence 677777664 6666666666666554
No 179
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.67 E-value=3.3e-08 Score=98.89 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=42.4
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTK 387 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~ 387 (415)
++.||++|+|+ ++.|.+|+||++|.|. .+.+.+|++++++.|++++.+. +.++++ |+||++|.
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~ 338 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVE 338 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCcee
Confidence 56777777777 5777777777777775 4577777777777777776553 455555 45554443
No 180
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.63 E-value=1.2e-07 Score=85.66 Aligned_cols=83 Identities=8% Similarity=0.098 Sum_probs=44.8
Q ss_pred ceECCCCEEcceEE-eeeEEccCcEECCCcEEee-cEEeCCccccchhHHH----------hhhhCCCcceEeCCCCEEe
Q 014953 322 SIISHGSFITSSFI-EHSVVGIRSRINANVHLKD-TMMLGADFYETDAEVA----------SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 322 ~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~----------~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.||+|++|..+.+ .++.||++|.|+.++.|.. +.|+++++|.+++.+. +.|+++ |.||.||.|.
T Consensus 113 a~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn---v~IGa~a~I~ 189 (269)
T TIGR00965 113 AFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN---CFIGARSEIV 189 (269)
T ss_pred cEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC---CEECCCCEEc
Confidence 44555555542222 2345555555555555544 5555555555555442 455666 6666666665
Q ss_pred -eeEECCCeEEcCCcccCc
Q 014953 390 -YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~~ 407 (415)
+++|++++.|++++.+.+
T Consensus 190 ~GV~IG~gavIGaGavI~~ 208 (269)
T TIGR00965 190 EGVIVEEGSVISMGVFIGQ 208 (269)
T ss_pred CCCEECCCCEEeCCCEECC
Confidence 666666666666665544
No 181
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.5e-08 Score=86.58 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=40.3
Q ss_pred eeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEee--------------eEECCCeEEcC
Q 014953 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKY--------------EQLKPICHIVE 401 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~--------------~~i~~~~~i~~ 401 (415)
|..||++++||+|++|.+|||.+++.|++++.+. ++++-+ +.||..++++. +++|..+.+++
T Consensus 306 NVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~---s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~d 382 (407)
T KOG1460|consen 306 NVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWK---SSIGRWARVEGIPVEPSPNLPFAALTILGADVSVED 382 (407)
T ss_pred CceecCCceecCCceeeeeeeccCcEeeccceEEeeeeccc---ccccceeeecccccccCCCCCcceeEEecccceecc
Confidence 4455666666667777777776666666655443 344555 66666665542 55556666655
Q ss_pred CcccCcc
Q 014953 402 TKYDSST 408 (415)
Q Consensus 402 ~~~~~~~ 408 (415)
..-+..+
T Consensus 383 ev~v~~s 389 (407)
T KOG1460|consen 383 EVIVLNS 389 (407)
T ss_pred eeEEeee
Confidence 5544433
No 182
>PLN02472 uncharacterized protein
Probab=98.61 E-value=1.3e-07 Score=85.54 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=48.8
Q ss_pred cceECCCCEEc-ceEEe----eeEEccCcEECCCcEEe-----------ecEEeCCccccchhHHHhhhhCCCcceEeCC
Q 014953 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK-----------DTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~-----------~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 384 (415)
++.||++|.|. +++|. ..+||++|.|+++|.|. +++|+++++|+.++.+. + |+||+
T Consensus 77 ~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~-----~---~~Igd 148 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR-----S---CTIEP 148 (246)
T ss_pred CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-----C---eEEcC
Confidence 45566666665 44443 25788888888888884 57888886665555442 2 66666
Q ss_pred CCEEe-eeEECCCeEEcCCcc
Q 014953 385 NTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+|.|. +|+|++++.|++++.
T Consensus 149 ~v~IG~~svI~~gavIg~~~~ 169 (246)
T PLN02472 149 ECIIGQHSILMEGSLVETHSI 169 (246)
T ss_pred CCEECCCCEECCCCEECCCCE
Confidence 66666 666666666666653
No 183
>PLN02694 serine O-acetyltransferase
Probab=98.59 E-value=8.8e-08 Score=87.43 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=28.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||++++|++++.+.+.+-+++.
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~ 254 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTT 254 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEECCcCCCCcE
Confidence 8888888885 8888888888888888777766654
No 184
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.57 E-value=2.7e-07 Score=81.06 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=64.4
Q ss_pred ccCccCCCeeec-CCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeec-EEeCCccccchhHH--HhhhhC
Q 014953 304 TSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDT-MMLGADFYETDAEV--ASLLAE 375 (415)
Q Consensus 304 ~~~~i~~~~~i~-~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~s-ii~~~~~~~~~~~~--~~~~~~ 375 (415)
.++.|.+++++. + .++.||+++.|+ +++|. +..||++|.|++++.|... --........+... ...|++
T Consensus 60 ~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 60 ENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 345566666651 1 256677777776 55552 4789999999999888632 00000000000000 123444
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+ |.||.+|.|. ++.||+++.|++++.+.+.+-.+|.
T Consensus 137 ~---v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v 173 (203)
T PRK09527 137 N---VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVV 173 (203)
T ss_pred C---cEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcE
Confidence 4 8888888887 8899999999999988877766654
No 185
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.56 E-value=1.3e-07 Score=92.10 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=65.6
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
.+.++..+ +.+.|+++|.|. +.+.+|+|+++|+|+ +|.|++|+|+++|.|+++++|.+|+++++
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~------------- 344 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD------------- 344 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC-------------
Confidence 34445544 556777888874 457899999999999 79999999999999999999999999999
Q ss_pred hCCCcceEeCCCCEEeeeEECC
Q 014953 374 AEGRVPVGIGENTKIKYEQLKP 395 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~~~~i~~ 395 (415)
++||+++++.+..+.+
T Consensus 345 ------~~v~~~~~~~~~~~~~ 360 (369)
T TIGR02092 345 ------VVIEPNVKIAGTSEQP 360 (369)
T ss_pred ------CEECCCCEeCCCCCcc
Confidence 8999999987654433
No 186
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.55 E-value=1e-07 Score=95.39 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe
Q 014953 316 DSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 316 ~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~ 389 (415)
++.|. ++.||++|.|+ ++.|.+|+||++|+|+ ++.+.+|+|++++.|+.++.+. +.++++ |.||+++.+.
T Consensus 274 ~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~---~~Ig~~~~i~ 347 (450)
T PRK14360 274 QTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSN---CRIGNFVEIK 347 (450)
T ss_pred CCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCc---eEECCCEEEe
Confidence 34443 57788888887 6778888888888885 5677788888887777777664 455555 5555555443
No 187
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.53 E-value=3.5e-07 Score=79.26 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=55.1
Q ss_pred cceECCCCEEc-ceEEee---eEEccCcEECCCcEEeecEE-eCCccccchhHH--HhhhhCCCcceEeCCCCEEe-eeE
Q 014953 321 DSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLKDTMM-LGADFYETDAEV--ASLLAEGRVPVGIGENTKIK-YEQ 392 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~---svig~~~~ig~~~~i~~sii-~~~~~~~~~~~~--~~~~~~~~~~~~Ig~~~~i~-~~~ 392 (415)
+..||+++.|+ ++++-+ -.||++|.|++++.|....- .+......+... ...|+++ |.||.+|.|. ++.
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~---v~IG~~a~I~~gv~ 149 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN---VWIGGRAVINPGVT 149 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC---cEECCCCEECCCCE
Confidence 45555555555 344322 27888888888887752110 000000000000 1233444 8899999887 899
Q ss_pred ECCCeEEcCCcccCcccccccc
Q 014953 393 LKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 393 i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||+++.|++++.+.+.+..+|.
T Consensus 150 IG~~~vIgagsvV~~di~~~~i 171 (183)
T PRK10092 150 IGDNVVVASGAVVTKDVPDNVV 171 (183)
T ss_pred ECCCCEECCCCEEccccCCCcE
Confidence 9999999999998888877764
No 188
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.53 E-value=2.8e-07 Score=78.50 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=29.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||++|.|. +++||+++.|++++.+.+.+-.+|.
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~ 155 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGAT 155 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCE
Confidence 8899999887 7889999999999888887776654
No 189
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.52 E-value=3.7e-07 Score=71.10 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=50.7
Q ss_pred CccCCCeee-cCCccc-cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 306 RRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
+.+++.+.+ +++.|. +++||++|+|+ +.+++|+|+++++++.++.|.+++|+++ +.||
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig-~~i~~svi~~~~~i~~~~~lg~siIg~~-------------------v~ig 89 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIG-GEVEDSIIEGYSNKQHDGFLGHSYLGSW-------------------CNLG 89 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEEC-CEECccEEcCCCEecCcCEEeeeEECCC-------------------CEEC
Confidence 344444444 455554 58888888886 4678999999999999999999999999 8899
Q ss_pred CCCEEee
Q 014953 384 ENTKIKY 390 (415)
Q Consensus 384 ~~~~i~~ 390 (415)
+++...|
T Consensus 90 ~~~~~~~ 96 (101)
T cd05635 90 AGTNNSD 96 (101)
T ss_pred CCceecc
Confidence 9887654
No 190
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.52 E-value=3.1e-07 Score=71.74 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=49.6
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcE---EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVH---LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~---i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
.++||+++.|++ ++.|+++++|+.++. +.+++|+++ |.|+.++.+. ++.|+++
T Consensus 22 ~~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 22 GIVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDN 78 (101)
T ss_pred eEEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCC
Confidence 345666666663 355666666666664 566667777 7888888887 6888888
Q ss_pred eEEcCCcccCcccccccc
Q 014953 397 CHIVETKYDSSTISRFSL 414 (415)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~ 414 (415)
+.|++++.+.+.+-.+++
T Consensus 79 ~~i~~~~~i~~~~~~~~~ 96 (101)
T cd03354 79 VKIGANAVVTKDVPANST 96 (101)
T ss_pred CEECCCCEECcccCCCCE
Confidence 888888887776655543
No 191
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.52 E-value=2.7e-07 Score=89.58 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=63.1
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
++++.+. ...+.|+++|.|.++.+.+++||++|+|+ ++.|.+|+|+++|.||++++|.+|+++++
T Consensus 285 ~i~~~~~-i~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~------------- 350 (361)
T TIGR02091 285 FVDSDAQ-VVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN------------- 350 (361)
T ss_pred EecCCCE-EECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC-------------
Confidence 3444442 34567888888855577899999999999 79999999999999999999999999999
Q ss_pred hCCCcceEeCCCCEEee
Q 014953 374 AEGRVPVGIGENTKIKY 390 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~~ 390 (415)
+.||.++.|.|
T Consensus 351 ------~~i~~~~~i~~ 361 (361)
T TIGR02091 351 ------VRIGEGVVIGN 361 (361)
T ss_pred ------CEECCCCEeCC
Confidence 88999888753
No 192
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.50 E-value=3.6e-07 Score=83.52 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 353 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~ 353 (415)
|.+.+.+++.++.++.| +.+.+. ++.||++|.|+ ++.|. ++.||++|.|++++.|.
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 33333333444444443 333332 34444444444 34442 44555555555444443
No 193
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.49 E-value=5e-07 Score=79.33 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=16.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+.||++|.|. +|.+.++++|++++.
T Consensus 151 ~~ig~~~~ig~~~~v~~~~~ig~~~~ 176 (197)
T cd03360 151 VTIGEGAFIGAGATIIQGVTIGAGAI 176 (197)
T ss_pred cEECCCCEECCCCEEcCCCEECCCCE
Confidence 6677777765 666666666666654
No 194
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.48 E-value=7.1e-07 Score=78.28 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=58.8
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEE--------eCCccccch---hHH-HhhhhCCCcceEeCC
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMM--------LGADFYETD---AEV-ASLLAEGRVPVGIGE 384 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii--------~~~~~~~~~---~~~-~~~~~~~~~~~~Ig~ 384 (415)
...||++|.|+ ++.|. .+.||++|.|++++.|.+... +.+..+... ... ...++++ |.||.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~---~~ig~ 141 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQR---VWIGE 141 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCC---cEECC
Confidence 45567777776 45553 678899999998888875311 111111000 000 1234555 78888
Q ss_pred CCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|. +++||+++.|++++.+.+.+-++++
T Consensus 142 ~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~ 172 (192)
T PRK09677 142 NVTILPGVSIGNGCIVGANSVVTKSIPENTV 172 (192)
T ss_pred CCEEcCCCEECCCCEECCCCEECcccCCCcE
Confidence 88887 8999999999999988888777664
No 195
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.48 E-value=6.6e-07 Score=74.29 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=9.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.||+++.|. ++.|++++.|++++
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCC
Confidence 3344444442 34444444444433
No 196
>PLN02357 serine acetyltransferase
Probab=98.47 E-value=4e-07 Score=85.54 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=22.1
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||.|+.|. ++.||++++|++++.+.+.+-+++
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~ 319 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRT 319 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEECcccCCCc
Confidence 6666666664 666777777777766666555544
No 197
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.47 E-value=4.7e-07 Score=78.98 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=56.6
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-------------cEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------TMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-------------sii 357 (415)
.++|++.+.+++.+++++.| +-|.|+ ++.||+|++|+ +++|+ .+.||++++|-+.+.|++ -+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 45566666666666666655 444443 56666666666 45554 566776666666666543 245
Q ss_pred eCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 358 LGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++++.|.+.+.+-.--.+|+.-+.||+|+-+- ++.|.++|+||...
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ 131 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNC 131 (260)
T ss_pred CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcE
Confidence 55555544443322111221114566665554 44444444444443
No 198
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.46 E-value=6.9e-07 Score=70.57 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=50.8
Q ss_pred eECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccc-hh--HHHhhhhCCCcceEeCCCCEEe-eeEEC
Q 014953 323 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYET-DA--EVASLLAEGRVPVGIGENTKIK-YEQLK 394 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~-~~--~~~~~~~~~~~~~~Ig~~~~i~-~~~i~ 394 (415)
.||++|.|+ ++.|. ...||++|.|++++.|... .+..... .. .-...++++ |.||.++.|. ++.|+
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~---~h~~~~~~~~~~~~~v~Ig~~---~~ig~~~~i~~g~~Ig 78 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG---SHDYRSPAFPLITAPIVIGDG---AWVAAEAFVGPGVTIG 78 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC---CCCCCcCccceecCCEEECCC---CEECCCCEECCCCEEC
Confidence 345555554 34442 4677777777777776431 0000000 00 001233444 7888888887 88888
Q ss_pred CCeEEcCCcccCcccccccc
Q 014953 395 PICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~~ 414 (415)
+++.|++++.+.+.+.++++
T Consensus 79 ~~~~i~~gs~v~~~~~~~~~ 98 (107)
T cd05825 79 EGAVVGARSVVVRDLPAWTV 98 (107)
T ss_pred CCCEECCCCEEeCcCCCCCE
Confidence 88888888888887777764
No 199
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.45 E-value=5.1e-07 Score=87.32 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=62.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc------cceECCCCEEcceEEeeeEEccCcEECCC-cEEeecEEeCCccccch
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV------DSIISHGSFITSSFIEHSVVGIRSRINAN-VHLKDTMMLGADFYETD 366 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~------~~~ig~~~~I~~~~i~~svig~~~~ig~~-~~i~~sii~~~~~~~~~ 366 (415)
++.+++.+ .++.+.+++.| ++|.|. +|+||++|+|+++.|.+|+|+++|+|+.+ +++.++++.++
T Consensus 256 ~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~------ 328 (353)
T TIGR01208 256 VVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKK------ 328 (353)
T ss_pred EECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCC------
Confidence 44555555 45555566666 555554 45556666665566679999999999988 58999999999
Q ss_pred hHHHhhhhCCCcceEeCCCCEEe---eeEECCCeEEc
Q 014953 367 AEVASLLAEGRVPVGIGENTKIK---YEQLKPICHIV 400 (415)
Q Consensus 367 ~~~~~~~~~~~~~~~Ig~~~~i~---~~~i~~~~~i~ 400 (415)
+.|++++.+. +.++|.+++|+
T Consensus 329 -------------~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 329 -------------VRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred -------------CEECCCcccccccceEEcCCceec
Confidence 8899998886 47788888775
No 200
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.44 E-value=6e-07 Score=79.85 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=50.9
Q ss_pred ccCCCCCccccCccCCCeee-cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe-----------------
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK----------------- 353 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~----------------- 353 (415)
.+++.+.+.+++.+++++++ +++.| .++.||++|.|+ ++.|. +++|+++|.|++++.|.
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 34555555566666666666 55666 477788888887 57775 48888888888888774
Q ss_pred ---ecEEeCCccccchhHH
Q 014953 354 ---DTMMLGADFYETDAEV 369 (415)
Q Consensus 354 ---~sii~~~~~~~~~~~~ 369 (415)
++.+++++.+++++.+
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~i 107 (205)
T cd03352 89 QLGGVIIGDDVEIGANTTI 107 (205)
T ss_pred CcceEEECCCEEECCCCEE
Confidence 4666777666666544
No 201
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.44 E-value=7.4e-07 Score=88.65 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=66.9
Q ss_pred cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCc-------ceEeCC
Q 014953 315 DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRV-------PVGIGE 384 (415)
Q Consensus 315 ~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~-------~~~Ig~ 384 (415)
+++.|. ++.||++|.|+ ++.|.+|+||++|.|++ +.+.+|+++++++|.+++.+. +.++++.. .++||.
T Consensus 258 ~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~ 336 (430)
T PRK14359 258 SGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGH 336 (430)
T ss_pred CCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccc
Confidence 445453 68889999998 68888999999999976 777888888887777666443 23333310 157778
Q ss_pred CCEEeeeEECCCeEEcCCcccC
Q 014953 385 NTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 385 ~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
++.|.+|+||+++.|++++...
T Consensus 337 ~~~i~d~~Ig~~~~ig~~~~~~ 358 (430)
T PRK14359 337 LSYLGDCEIDEGTNIGAGTITC 358 (430)
T ss_pred cccccCCEECCCCEECCCceEc
Confidence 8888889999999999987543
No 202
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.43 E-value=1.4e-06 Score=74.92 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=54.6
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccch------h--HHHhhhhCCCcceEeCCCCEE
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETD------A--EVASLLAEGRVPVGIGENTKI 388 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~~------~--~~~~~~~~~~~~~~Ig~~~~i 388 (415)
+..||++|.|+ ++.+. +..||++|.|++++.|..+- +.... . .-...|+++ |.||.+|.|
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~-----h~~~~~~~~~~~~~~~~v~IG~~---~~Ig~~a~I 133 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG-----HPLDPEERNRGLEYAKPITIGDN---VWIGGGVII 133 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC-----CCCChhHccccceecCCcEeCCC---EEECCCCEE
Confidence 34566666665 44442 46788888888888875320 00000 0 001233333 888888888
Q ss_pred e-eeEECCCeEEcCCcccCcccccccc
Q 014953 389 K-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 389 ~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
. ++.||+++.|++++.+.+.+-.++.
T Consensus 134 ~~gv~Ig~~~~VgagavV~~~vp~~~v 160 (169)
T cd03357 134 LPGVTIGDNSVIGAGSVVTKDIPANVV 160 (169)
T ss_pred eCCCEECCCCEECCCCEEccccCCCcE
Confidence 6 8999999999999988887776664
No 203
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.43 E-value=1.1e-06 Score=80.22 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred cccCccCCCeee-cCCcc-ccceECCCCE-EcceEE-----eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhh
Q 014953 303 YTSRRNLPPSKI-DDSKI-VDSIISHGSF-ITSSFI-----EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (415)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i-~~~~ig~~~~-I~~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~ 374 (415)
...+.+.+++++ +++.| ..++|+.++. ++++.| ..++||.+|.||.++.| .+++.++. ..-..++
T Consensus 182 ~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~------~~~V~IG 254 (341)
T TIGR03536 182 ADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGG------NIVISVG 254 (341)
T ss_pred cCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCC------ceeEEEC
Confidence 333444444444 34333 2455555555 443222 36888888888888888 44554441 0113445
Q ss_pred CCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 375 EGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
++ |.||.||.| +..||++++|++|+.
T Consensus 255 e~---~lIGagA~I-GI~IGd~~iIGAGav 280 (341)
T TIGR03536 255 EG---CLLGANAGI-GIPLGDRCTVEAGLY 280 (341)
T ss_pred CC---cEECCCCEE-eeEECCCCEECCCCE
Confidence 55 778888877 767777777777664
No 204
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.43 E-value=1.1e-05 Score=75.01 Aligned_cols=214 Identities=13% Similarity=0.162 Sum_probs=124.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccCC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~~ 80 (415)
.++-+|+||||.||||+ .+.||.|+||....+++++.++++.. .|.. ..+|-+++. +++..+++.+.. ..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-GV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-CC
Confidence 46789999999999997 78999999996544899999988864 3432 456666655 467888887642 11
Q ss_pred CC--cccCCceEEEecCc-----cCCCCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHHHH
Q 014953 81 SG--VTFGDGCVEVLAAT-----QTPGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (415)
Q Consensus 81 ~~--~~~~~~~v~i~~~~-----~~~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (415)
.. ..|....+.-+... ....+.+ .-.+.|.|+...... ..+++....+.+.+.+.+.|.+...-=-.++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 10 00110000000000 0000000 112345555443221 1122222233689999999997653334688
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC--CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
.+|..+++++++=+.+...+ .+.-|.+... +| +|+++.+-|...... . +........+++.++
T Consensus 158 g~~~~~~~~~~~evv~Kt~~-dek~G~l~~~-~g~~~vvEyse~p~e~~~~-~------------~~~~~~~~~nt~n~~ 222 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRA-DVKGGTLIQY-EGKLRLLEIAQVPKEHVDE-F------------KSIKKFKIFNTNNLW 222 (300)
T ss_pred HHHHhcCCceEEEEeecCCC-CCcccEEEEE-CCEEEEEEeccCCHHHHHh-h------------cCcccceEEEEeEEE
Confidence 88999999998866665442 2345655542 44 466777766542210 0 011124678899999
Q ss_pred EeHHHHHHHHhh
Q 014953 228 FKKEILLNLLRW 239 (415)
Q Consensus 228 ~~~~~l~~~l~~ 239 (415)
++-++|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999877654
No 205
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.42 E-value=8e-07 Score=70.35 Aligned_cols=34 Identities=18% Similarity=0.014 Sum_probs=23.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||+++.+. ++.|++++.|++++.+.+.+..++
T Consensus 65 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~ 99 (109)
T cd04647 65 VWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNS 99 (109)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEeeECCCCC
Confidence 6677777774 777777777777777666555444
No 206
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.40 E-value=1.1e-06 Score=77.58 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=11.6
Q ss_pred ccccCccCCCeee-cCCccc-cceECCCCEEc
Q 014953 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~ 331 (415)
+.+.+.+.+++.+ +++.|. ++.|+.+|+|+
T Consensus 108 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 139 (201)
T TIGR03570 108 IMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 139 (201)
T ss_pred ECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 3333444444444 333332 33343334443
No 207
>PRK10191 putative acyl transferase; Provisional
Probab=98.39 E-value=1.1e-06 Score=72.87 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=27.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.+. ++.||+++.|++++.+.+.+..+++
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~~~~~ 134 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDSVPDNAL 134 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCccCCCcE
Confidence 7788888887 7888888888888877777766654
No 208
>PLN02739 serine acetyltransferase
Probab=98.39 E-value=7.5e-07 Score=83.03 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=26.5
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.|+.|- ++.||+++.|++++.+.+.+..++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~st 299 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSM 299 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcE
Confidence 7788888876 7888888888888877776666553
No 209
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.38 E-value=1.1e-06 Score=70.74 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=14.0
Q ss_pred ccccCccCCCeee-cCCcc-ccceECCCCEEc
Q 014953 302 IYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT 331 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~ 331 (415)
+...+.+++++.+ .++.+ .++.||++|.|+
T Consensus 13 i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~ 44 (119)
T cd03358 13 IENDVKIGDNVKIQSNVSIYEGVTIEDDVFIG 44 (119)
T ss_pred ECCCcEECCCcEECCCcEEeCCeEECCCcEEc
Confidence 3333444444444 33444 245555555555
No 210
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.35 E-value=1.8e-06 Score=78.53 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred ECCCCEEcceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCC
Q 014953 324 ISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVET 402 (415)
Q Consensus 324 ig~~~~I~~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~ 402 (415)
||.. +| ++.|. +|+||++|.|++++.|.+.. .++ ......|+++ |.||.||.| +..||++++|++|
T Consensus 187 IG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~L-sGg------~~~pV~IGe~---~~IGagA~I-GI~IGd~~VVGAG 253 (319)
T TIGR03535 187 LGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTL-SGG------GKEVISIGER---CLLGANSGL-GISLGDDCVVEAG 253 (319)
T ss_pred ecCc-eE-EEEEccCCEECCCCEECCCceeccee-cCC------CcccEEECCC---cEECCCCEE-CeEECCCCEECCC
Confidence 4443 34 34443 46677777777766644421 111 0111122333 777777777 6677777777777
Q ss_pred ccc
Q 014953 403 KYD 405 (415)
Q Consensus 403 ~~~ 405 (415)
+.+
T Consensus 254 aVV 256 (319)
T TIGR03535 254 LYV 256 (319)
T ss_pred CEE
Confidence 653
No 211
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.32 E-value=1.4e-06 Score=74.13 Aligned_cols=14 Identities=21% Similarity=-0.100 Sum_probs=6.7
Q ss_pred CccccCccCCCeee
Q 014953 301 PIYTSRRNLPPSKI 314 (415)
Q Consensus 301 ~~~~~~~i~~~~~i 314 (415)
.+.+.+.+++++++
T Consensus 63 ~I~~~~~Ig~~~~i 76 (162)
T TIGR01172 63 DIHPGARIGRGVFI 76 (162)
T ss_pred EeCCCCEECCCeEE
Confidence 34444445555555
No 212
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.32 E-value=7.6e-07 Score=79.25 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhh
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 372 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~ 372 (415)
.|.+.+..++.+.+++.+ +++.|- ++.++++|.|. .+++ ...+||+||+||-|+.|.+ ++ ++....-.+
T Consensus 112 ~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G-VL------ep~~a~Pv~ 184 (271)
T COG2171 112 VPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG-VL------EPLQANPVI 184 (271)
T ss_pred cCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE-Ee------cCCCCCCeE
Confidence 344555556666666666 334443 78888888888 4544 3567777777777777666 22 222333344
Q ss_pred hhCCCcceEeCCCCE-EeeeEECCCeEEcCCcc
Q 014953 373 LAEGRVPVGIGENTK-IKYEQLKPICHIVETKY 404 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~-i~~~~i~~~~~i~~~~~ 404 (415)
|+++ |.||.|+. +.++++|++|.|..|..
T Consensus 185 Igdn---cliGAns~~veGV~vGdg~VV~aGv~ 214 (271)
T COG2171 185 IGDN---CLIGANSEVVEGVIVGDGCVVAAGVF 214 (271)
T ss_pred ECCc---cEeccccceEeeeEeCCCcEEecceE
Confidence 4555 66666652 23555555555555443
No 213
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.31 E-value=1.6e-06 Score=72.96 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=42.3
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICH 398 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~ 398 (415)
.+.||++|+|| ++.|..|.|+++|.||= +|+++++ ++||++|.|. ++++-++..
T Consensus 72 p~~IG~~vtIGH~aivHGc~Ig~~~lIGm-----gA~vldg-------------------a~IG~~~iVgAgalV~~~k~ 127 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHGCTIGDNVLIGM-----GATVLDG-------------------AVIGDGSIVGAGALVTPGKE 127 (176)
T ss_pred CeEECCCcEEcCccEEEEeEECCCcEEec-----CceEeCC-------------------cEECCCcEEccCCcccCCcC
Confidence 68899999999 58888899999999994 4555666 5566665555 555555555
Q ss_pred EcCCcc
Q 014953 399 IVETKY 404 (415)
Q Consensus 399 i~~~~~ 404 (415)
++++.-
T Consensus 128 ~p~~~L 133 (176)
T COG0663 128 IPGGSL 133 (176)
T ss_pred CCCCeE
Confidence 555543
No 214
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.30 E-value=3.3e-06 Score=71.90 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=16.6
Q ss_pred ceECCCCEEc-ceEEeeeEEccCcEECCCcEE
Q 014953 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i 352 (415)
+.||++|.|+ ++.+.++.|+++|.||+++.|
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I 104 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEE
Confidence 3455555555 455555555555555555444
No 215
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=77.18 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=75.7
Q ss_pred eee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-cEEeCCccccchhHHHhhhhCCCc-ceEeCCC
Q 014953 312 SKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLLAEGRV-PVGIGEN 385 (415)
Q Consensus 312 ~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~-~~~Ig~~ 385 (415)
++| ++++++ .++||+|++|- ++.|. ++.++.++.|.-++.++. ++|++|+||.-|+.++-.++-... |+.||+|
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 444 444454 68889998888 47774 888999999987888775 678899999999988877755555 8899999
Q ss_pred CEEe-eeEECCCeEEcCCcccC
Q 014953 386 TKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.|. |+.+..++.|+++..++
T Consensus 189 cliGAns~~veGV~vGdg~VV~ 210 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVA 210 (271)
T ss_pred cEeccccceEeeeEeCCCcEEe
Confidence 9998 99999999999998654
No 216
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=8.8e-06 Score=70.35 Aligned_cols=118 Identities=22% Similarity=0.367 Sum_probs=81.1
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh--hHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~--~~i~~~l~~~~~~~~~~ 83 (415)
+++.+||-|--.+||| .-|.|+|+++. |||+++|++++++. +++++|.++... +.+.++.... |
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G- 68 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G- 68 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C-
Confidence 4555566666667888 57999999999 99999999999875 678999998765 3454444321 1
Q ss_pred ccCCceEEEecCccCCCCCCCccccchH-HHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTA-DAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~t 160 (415)
+.+. .|+. +.|......++. .+.+.++=+.||. +.+.+ +..+++.|.+++++.+
T Consensus 69 ------~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 69 ------FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred ------eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 2221 3544 444444444443 2256888899999 66666 4788999999987643
No 217
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.19 E-value=6.5e-06 Score=74.97 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=55.5
Q ss_pred eee-cCCccc-cceECCCCEEc-ceEEe-ee-EEccCcEECCCcEEee-cEEeCCccccchhHHHhhh-hCCCcceEeCC
Q 014953 312 SKI-DDSKIV-DSIISHGSFIT-SSFIE-HS-VVGIRSRINANVHLKD-TMMLGADFYETDAEVASLL-AEGRVPVGIGE 384 (415)
Q Consensus 312 ~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~s-vig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~-~~~~~~~~Ig~ 384 (415)
++| ++.+++ .++||+||+|. ++.|. ++ .||++ .| +++|.. |+|+++++|..++.+.-.+ +.++.|+.||+
T Consensus 154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe 230 (319)
T TIGR03535 154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE 230 (319)
T ss_pred cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence 444 333443 46666666665 34442 34 34443 33 233333 5556666666666554433 34455788888
Q ss_pred CCEEe-eeEECCCeEEcCCccc--Ccccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYD--SSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~--~~~~~~~~~ 414 (415)
+|.|. +|.| ++.||+++.+ -..+.++|+
T Consensus 231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 231 RCLLGANSGL--GISLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred CcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence 88888 8888 7888888752 233444443
No 218
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.17 E-value=1.6e-05 Score=71.19 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=75.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
|||.|-|.++|+ .-|.|.+++|+ |||+|+++++.+++ +++|+|.|.. +++.+.+.+. + . .
T Consensus 2 aiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~---g------~-~ 62 (217)
T PF02348_consen 2 AIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY---G------A-K 62 (217)
T ss_dssp EEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT---T------S-E
T ss_pred EEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc---C------C-e
Confidence 899999999999 57999999999 99999999999865 7898888753 4555555431 1 1 1
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+...+.... .++......+..+..+ ..+.++.+.||. +.+.. +..+++.+.+..++
T Consensus 63 v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 222222211 2444333333333321 134789999999 55554 78899988888765
No 219
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=4.5e-05 Score=73.64 Aligned_cols=213 Identities=18% Similarity=0.274 Sum_probs=122.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC-Ccceeehhehhhhhc----cCCc-EEEEEcccChhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQYNSASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~----~gi~-~I~vv~~~~~~~i~~~l~~~~~~ 79 (415)
-.++-+|+||||+|+||+ ...||.+++|. |+ ++++.+.+.++. .+++ ..++-++...++-..++....-+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 356789999999999998 78999999999 66 999999887764 3443 55666777765555555432112
Q ss_pred CC-Cccc---CCceEE-EecCccCC----CCC-CCccccchHH---HHHHhhhhhcCCCCCCcCeEEEEcCCeecc-cCh
Q 014953 80 GS-GVTF---GDGCVE-VLAATQTP----GEA-GKRWFQGTAD---AVRQFHWLFEDPRNKVIEDVLILSGDHLYR-MDY 145 (415)
Q Consensus 80 ~~-~~~~---~~~~v~-i~~~~~~~----~~~-~~~~~~Gt~~---al~~~~~~i~~~~~~~~~~~lv~~gD~i~~-~~l 145 (415)
+. ..++ ...... +......+ .+. -.-+|.|.|+ +|... ..++++...+.+.+.|.+.|.+.. .|
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~S-G~le~l~~~G~e~lfV~nIDNL~~~vD- 256 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSS-GILEKLIAQGIEYLFVSNIDNLGATVD- 256 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhc-chHHHHHhcCceEEEEecccccccccC-
Confidence 21 1111 000011 11111110 000 0112345554 44431 022222223468999999999443 34
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEE-ECCCCCeEEEEEcCCcccccccccccccccccccccccccceee-e
Q 014953 146 MDFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-M 223 (415)
Q Consensus 146 ~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 223 (415)
-.++.++...+.+.++=++....+ ...-|+++ .|..-||+.+.+-|........ ..........+ .
T Consensus 257 ~~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-----------s~~~~~~~n~Nni 324 (472)
T COG4284 257 LKFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-----------SDGKLKYFNTNNI 324 (472)
T ss_pred HHHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-----------cccceeeeccccc
Confidence 368888999999988877665543 35567666 6666788888887764221000 00001122334 6
Q ss_pred eEEEEeHHHHHHH
Q 014953 224 GVYLFKKEILLNL 236 (415)
Q Consensus 224 Giyi~~~~~l~~~ 236 (415)
++++++.+++...
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 7888888877543
No 220
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.14 E-value=1.3e-05 Score=78.68 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=60.5
Q ss_pred CeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC---------CeEEEEEcCCcccccc
Q 014953 130 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKA 199 (415)
Q Consensus 130 ~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ek~~~~~~~~ 199 (415)
.-++|..+|. +...+ ...+.. .++.++++..+.+-.-..+.|++.+|+++ .+..+.-||....-.
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR- 128 (414)
T ss_pred cceEEEecccccccCc-cccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH-
Confidence 3589999994 33333 112211 23677888888775556789999999888 788888888765321
Q ss_pred cccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 200 MAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
... ........+.++|++.|+.+..+.++.
T Consensus 129 --~~~-------av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 129 --ASG-------AVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred --hCC-------cccCCCcccccccceeccHHHHHHHHH
Confidence 000 001112356789999999987776654
No 221
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.14 E-value=4.5e-05 Score=75.33 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=124.1
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhcc--------------CCc-EEEEEcccC-hh
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GIN-KVYILTQYN-SA 67 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~--------------gi~-~I~vv~~~~-~~ 67 (415)
.++-+|+||||.||||+ .+.||.|++|+ ++ ++++...+++.+. +.. .++|-++.. ++
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56778899999999998 88999999884 67 8999998876431 111 346666644 57
Q ss_pred HHHHHHHhhccCCCCcccCCceEEEecCccCC----------CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEE
Q 014953 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTP----------GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVL 133 (415)
Q Consensus 68 ~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~----------~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~l 133 (415)
...+++.+..-|+-. ...+.+.....-+ .+.. .-.|.|.|+-...... .+++....+.+.+.
T Consensus 191 ~T~~ff~~~~~FGl~----~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 266 (493)
T PLN02435 191 ATRKFFESHKYFGLE----ADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVD 266 (493)
T ss_pred HHHHHHHhCCCCCCC----ccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEE
Confidence 788888764323311 1112221110000 0000 1124566665543321 23322223468999
Q ss_pred EEcCCee-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE-CCCCC--eEEEEEcCCcccccccccccccccc
Q 014953 134 ILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGR--VLSFSEKPKGKDLKAMAVDTTVLGL 209 (415)
Q Consensus 134 v~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~ 209 (415)
+.+.|.+ ...---.++-++..++.++.+-+.+...+ .+.-|++.. +.+|+ |+.+.|-+.......
T Consensus 267 v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~---------- 335 (493)
T PLN02435 267 CYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI---------- 335 (493)
T ss_pred EEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc----------
Confidence 9999994 43333567888888999988876655332 244576654 24554 566665543221100
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 210 SKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 210 ~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
++.......+..+++.++|+-++|+.+.+
T Consensus 336 ~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 336 NQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred CccccccccchhhHHHhhccHHHHHHHHH
Confidence 01112223467788899999999987643
No 222
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.14 E-value=1e-05 Score=59.49 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=24.7
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEee---------eEEccCcEECCCcEE
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHL 352 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~---------svig~~~~ig~~~~i 352 (415)
+++++.+ +++.+. ++.||++|.|+ ++.|.+ .+||++|.|++++.+
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i 59 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVI 59 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEE
Confidence 3444444 344444 37777777777 455544 455555555555444
No 223
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.14 E-value=8.7e-06 Score=69.29 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.3
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
.++++ |.||.|+.|- +-.||+|++||+++.+.+.+-.++
T Consensus 121 tIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~ 160 (194)
T COG1045 121 TIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNA 160 (194)
T ss_pred ccCCC---eEECCCCEEEcceEECCCCEECCCceEccCCCCCc
Confidence 44555 8888888876 888888888888888777665544
No 224
>PRK10502 putative acyl transferase; Provisional
Probab=98.12 E-value=5.2e-06 Score=72.18 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=33.9
Q ss_pred eeEEccCcEECCCcEEe---ecEEeCCccccchhHHHhh--h-hC-----CCcceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 337 HSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASL--L-AE-----GRVPVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~---~sii~~~~~~~~~~~~~~~--~-~~-----~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+..||++|.|++++.|. +..|++++.|..++.+.+. . .+ ...+++||++|.|. +++|.++++|++++.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35555666666555554 2445555555544433211 0 00 00135566666665 666666666666554
Q ss_pred c
Q 014953 405 D 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 151 I 151 (182)
T PRK10502 151 V 151 (182)
T ss_pred E
Confidence 3
No 225
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.11 E-value=7.8e-06 Score=66.88 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.0
Q ss_pred ceECCCCEEc
Q 014953 322 SIISHGSFIT 331 (415)
Q Consensus 322 ~~ig~~~~I~ 331 (415)
+.||++|.|+
T Consensus 48 a~Ighd~~IG 57 (147)
T cd04649 48 VIVGKGSDVG 57 (147)
T ss_pred EEECCCCEEC
Confidence 3344444444
No 226
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.09 E-value=4.6e-05 Score=74.46 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=137.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~ 79 (415)
..++-+|+||||.||||+ .+.||.|+||.....+++..++++.. .|.. .++|-++.. +++..+++.+.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 457888999999999998 78999999996654788888877764 3433 455666544 57888999874322
Q ss_pred CCCcc-cCCceEEEecCccC-CCC-CC------Ccc-ccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHH
Q 014953 80 GSGVT-FGDGCVEVLAATQT-PGE-AG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (415)
Q Consensus 80 ~~~~~-~~~~~v~i~~~~~~-~~~-~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (415)
..... |....+..+..... +-+ .. ..| |.|.|+...... ..+++....+.+.+.+.+.|.+...--..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 11110 11111111111110 000 00 011 346665443222 12222111336899999999966543346
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCC--eEEEEEcCCcccccccccccccccccccccccccceeeeeE
Q 014953 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (415)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 225 (415)
++.++.++++++.+-+.+...+ .+.-|+++.. +|+ ++++.+-|..... .+ .......+.++|-
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~~-~G~~~vvEysqip~~~~~-~~------------~~~~~~~~FntnN 275 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSP-DEKGGVLCRY-DGKLQVVEYSQIPKEHMA-EF------------KDIKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CST-TTSSEEEEEE-TTEEEEEEGGGS-HHGHH-HH------------TSTTTSBEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCC-CCceeEEEEe-CCccEEEEeccCCHHHHH-hh------------hccccceEEEece
Confidence 8888899999998877776542 2445666542 454 4444443332110 00 0001134567888
Q ss_pred EEEeHHHHHHHHhhhCCC--------C-----C-----cccccchhhhcc-cceEEEEEeC-ceEEecCCHHHHHHHHHh
Q 014953 226 YLFKKEILLNLLRWRFPT--------A-----N-----DFGSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 226 yi~~~~~l~~~l~~~~~~--------~-----~-----~~~~~~l~~l~~-~~~i~~~~~~-g~~~di~t~~~y~~an~~ 285 (415)
-+++-++++++++..... . . .|+. ++-..+. -.+..++.++ ..|..+.+..|++....+
T Consensus 276 i~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et-~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd 354 (420)
T PF01704_consen 276 IWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFET-AIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSD 354 (420)
T ss_dssp EEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEEC-GGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHST
T ss_pred eeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehh-hhhchHhhccCcEEEEEcHHHcCCccccCcceeeccc
Confidence 899999998887642111 0 0 0110 0111111 1123333433 568899999999988876
Q ss_pred hc
Q 014953 286 LT 287 (415)
Q Consensus 286 ~l 287 (415)
+-
T Consensus 355 ~y 356 (420)
T PF01704_consen 355 LY 356 (420)
T ss_dssp TE
T ss_pred ee
Confidence 54
No 227
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.07 E-value=1.1e-05 Score=70.56 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred ccCCCeee-cCCccc-cceECCCCEEcceEEeeeEEccCcEECCCcEEee-cEEeCCccccchhHHHhhh-----hCCCc
Q 014953 307 RNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLL-----AEGRV 378 (415)
Q Consensus 307 ~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~-----~~~~~ 378 (415)
.|+|.+.| ++++|. ++.||+-|+|+. +..|++++.|++.++|.+ +.|+.++.|-+.+.++..- ..+..
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T 80 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPT 80 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCce
Confidence 34444444 444442 566666666663 345555555555555544 5555555555555554211 11122
Q ss_pred ceEeCCCCEEe
Q 014953 379 PVGIGENTKIK 389 (415)
Q Consensus 379 ~~~Ig~~~~i~ 389 (415)
.+.||+||.|+
T Consensus 81 ~l~IG~~n~IR 91 (260)
T COG1043 81 RLIIGDNNTIR 91 (260)
T ss_pred EEEECCCCeEe
Confidence 35667776665
No 228
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.06 E-value=1e-05 Score=73.96 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=4.7
Q ss_pred ccCccCCCeee
Q 014953 304 TSRRNLPPSKI 314 (415)
Q Consensus 304 ~~~~i~~~~~i 314 (415)
+.+.|++++.+
T Consensus 146 ~~a~IG~g~~I 156 (273)
T PRK11132 146 PAAKIGRGIML 156 (273)
T ss_pred CcceECCCeEE
Confidence 33444444444
No 229
>PRK10191 putative acyl transferase; Provisional
Probab=98.04 E-value=1.8e-05 Score=65.74 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=12.2
Q ss_pred eEEccCcEECCCcEEee-cEEeCC
Q 014953 338 SVVGIRSRINANVHLKD-TMMLGA 360 (415)
Q Consensus 338 svig~~~~ig~~~~i~~-sii~~~ 360 (415)
++||++|.||+++.+.+ ..|+++
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCC
Confidence 35666666666555543 444444
No 230
>PLN02739 serine acetyltransferase
Probab=98.03 E-value=1.3e-05 Score=74.95 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=25.0
Q ss_pred ccccCccCCCeeec---CCccc-cceECCCCEEc-ceEEe---------eeEEccCcEECCCcEE
Q 014953 302 IYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL 352 (415)
Q Consensus 302 ~~~~~~i~~~~~i~---~~~i~-~~~ig~~~~I~-~~~i~---------~svig~~~~ig~~~~i 352 (415)
+.+.+.|+.++.|. ++.|. ++.||++|.|. +++|- +.+||++|.||+++.|
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I 272 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI 272 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE
Confidence 44455555555552 23332 44555555554 34442 3456666666655554
No 231
>PLN02357 serine acetyltransferase
Probab=98.03 E-value=1.4e-05 Score=75.38 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred ccccCccCCCeeec---CCccc-cceECCCCEEc-ceEEe---------eeEEccCcEECCCcEEe-ecEEeCC
Q 014953 302 IYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLK-DTMMLGA 360 (415)
Q Consensus 302 ~~~~~~i~~~~~i~---~~~i~-~~~ig~~~~I~-~~~i~---------~svig~~~~ig~~~~i~-~sii~~~ 360 (415)
+.+.+.|+.++.+. ++.|. +++||++|.|. +++|. +++||++|.||.++.|. +..|+++
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg 302 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG 302 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC
Confidence 33444455555552 22332 35555555555 34442 47888888888887774 4666667
No 232
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.00 E-value=2.4e-05 Score=61.77 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=6.2
Q ss_pred eEEccCcEECCCcEEe
Q 014953 338 SVVGIRSRINANVHLK 353 (415)
Q Consensus 338 svig~~~~ig~~~~i~ 353 (415)
+.||++|.|++++.|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 3333333333333333
No 233
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.98 E-value=8e-05 Score=79.07 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=122.1
Q ss_pred eEEEEcCCeecccC--hHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCC--CCeEEEEEcCCccccccccccccc
Q 014953 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (415)
Q Consensus 131 ~~lv~~gD~i~~~~--l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~--~~v~~~~ek~~~~~~~~~~~~~~~ 206 (415)
.++|..||++..++ +.+ -.+++++.+....+..-..+.|++..|.+ +++..+..||..+....+.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 79999999976654 222 12355555555554444578999999876 6788888888866532221
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC------CCcccccchhhhc----------ccceEEEEEeC-ce
Q 014953 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT------ANDFGSEIIPASA----------NEQFLKAYLFN-DY 269 (415)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~------~~~~~~~~l~~l~----------~~~~i~~~~~~-g~ 269 (415)
.....+.++|+|+|+.+....++.....+ ..++-.|++..|- ++.++....+. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 11347899999999999887666542211 2233344544432 23456666665 56
Q ss_pred EEecCCHHHHHHHHHhhcCCCCC-CCccCCCCCccccCccCCCeeecCCccccceECCCCEEcc--eEEeeeEEccCcEE
Q 014953 270 WEDIGTIRSFFEANLALTAHPPM-FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITS--SFIEHSVVGIRSRI 346 (415)
Q Consensus 270 ~~di~t~~~y~~an~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~~--~~i~~svig~~~~i 346 (415)
|+-+||-+.|+.....+.+.... -..+... ..-.|. +.+.|+++++++.+++ ..|++|.|+.+++|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~------~~~~~~-----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHRK------VKPHPA-----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhccc------cCCCCc-----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 89999999988654333221100 0011111 111111 2336888999999984 34788999999999
Q ss_pred CCCcEEeecEE
Q 014953 347 NANVHLKDTMM 357 (415)
Q Consensus 347 g~~~~i~~sii 357 (415)
|.++.|.++..
T Consensus 364 g~~~Iisgv~~ 374 (974)
T PRK13412 364 ASRSIITGVPE 374 (974)
T ss_pred cCCcEEecccc
Confidence 99999988753
No 234
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.98 E-value=2.6e-05 Score=64.99 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.7
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.++++ |.||.+|.|. ++.||+++.|++++.+.+.+.+++.
T Consensus 75 ~Ig~~---~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v 115 (145)
T cd03349 75 IIGND---VWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI 115 (145)
T ss_pred EECCC---CEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence 44555 7888888886 8899999999999988888877764
No 235
>PLN02694 serine O-acetyltransferase
Probab=97.96 E-value=2.9e-05 Score=71.14 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=6.9
Q ss_pred ccChHHHHHHHHHc
Q 014953 142 RMDYMDFVQNHRQS 155 (415)
Q Consensus 142 ~~~l~~~l~~h~~~ 155 (415)
..+|.+.|.++...
T Consensus 57 ~~~~~~al~~~l~~ 70 (294)
T PLN02694 57 HSSLERSLSFHLGN 70 (294)
T ss_pred CcCHHHHHHHHHHH
Confidence 33455555555443
No 236
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.95 E-value=2.1e-05 Score=72.11 Aligned_cols=12 Identities=0% Similarity=-0.250 Sum_probs=4.3
Q ss_pred ccccCccCCCee
Q 014953 302 IYTSRRNLPPSK 313 (415)
Q Consensus 302 ~~~~~~i~~~~~ 313 (415)
+..++.+++++.
T Consensus 187 Vr~gA~LGeGT~ 198 (341)
T TIGR03536 187 VRLGAYVGEGTT 198 (341)
T ss_pred EcCCcEECCCCE
Confidence 333333333333
No 237
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.95 E-value=8.4e-05 Score=69.45 Aligned_cols=218 Identities=12% Similarity=0.107 Sum_probs=120.2
Q ss_pred EEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhccC--------C-cEEEEEcccC-hhHHHHHHHhh
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG--------I-NKVYILTQYN-SASLNRHLARA 76 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~g--------i-~~I~vv~~~~-~~~i~~~l~~~ 76 (415)
.+|+||||.||||+ .+.||.|+|+ .|+ +++++.++++.+.. . -.++|-++.. +++..+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 8899999999 478 99999998886532 1 1456667654 57788888764
Q ss_pred ccCCCCc-c---cCCceEEEec-CccCC----CCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCee-cc
Q 014953 77 YNYGSGV-T---FGDGCVEVLA-ATQTP----GEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHL-YR 142 (415)
Q Consensus 77 ~~~~~~~-~---~~~~~v~i~~-~~~~~----~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i-~~ 142 (415)
.-|+-.. + |....+-.+. ..... .+.. .-.+.|.|+-..... ..++++...+.+.+.+..-|.. ..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3233110 0 1111111121 00000 0000 112456666554332 1222222234678888888884 33
Q ss_pred cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE--CCCCC--e--EEEEEcCCcccccccc-cccccccccccccc
Q 014953 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR--V--LSFSEKPKGKDLKAMA-VDTTVLGLSKQEAE 215 (415)
Q Consensus 143 ~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~ 215 (415)
.-.-.++-.+..+++++...+.+... .+.-|+++. ..+|+ | +++.|-+......... -+. ++ ..-
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~-----~~-~~~ 229 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDV-----DD-KTG 229 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCc-----cc-ccc
Confidence 33456677777888888877665332 356676653 23443 3 6666554311100000 000 00 000
Q ss_pred cccceeeeeEEEEeHHHHHHHHhh
Q 014953 216 EKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+-.+++.++|+-+.+.+.++.
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred cccCCCeeeeEEEeHHHHHHHHhh
Confidence 123467889999999988877764
No 238
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=97.89 E-value=8.5e-05 Score=63.80 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=13.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
++||+||.|. ++++.++ |++++..
T Consensus 137 v~Ig~~~~VgagavV~~~--vp~~~vv 161 (169)
T cd03357 137 VTIGDNSVIGAGSVVTKD--IPANVVA 161 (169)
T ss_pred CEECCCCEECCCCEEccc--cCCCcEE
Confidence 5666666665 5555553 5555543
No 239
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.81 E-value=1.6e-05 Score=72.71 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=63.9
Q ss_pred CccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCC
Q 014953 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (415)
Q Consensus 301 ~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~ 377 (415)
.+.....+.+-+.+ .+|.|+ |++||++|+|+ ++.+.+|.|..++.++..+.|..++++.++.|+-++ ++...
T Consensus 260 ~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~----~id~~- 334 (371)
T KOG1322|consen 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA----RIDKN- 334 (371)
T ss_pred cccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce----EEecc-
Confidence 33334444444455 677776 59999999999 799999999999999999999999999998887776 33333
Q ss_pred cceEeCCCCEEee
Q 014953 378 VPVGIGENTKIKY 390 (415)
Q Consensus 378 ~~~~Ig~~~~i~~ 390 (415)
++||+|+.|.+
T Consensus 335 --a~lG~nV~V~d 345 (371)
T KOG1322|consen 335 --AVLGKNVIVAD 345 (371)
T ss_pred --cEeccceEEec
Confidence 77888888764
No 240
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.79 E-value=5.8e-05 Score=66.21 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=54.6
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEe---ecEEeCCccccchhHHHhh-h----------------hCC---C
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASL-L----------------AEG---R 377 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~---~sii~~~~~~~~~~~~~~~-~----------------~~~---~ 377 (415)
++.++.+|++.--......||++|.|++++.|. +..|++++.|++++.+... . ..+ .
T Consensus 49 ~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
T PRK09677 49 GFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLES 128 (192)
T ss_pred ceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhccccc
Confidence 556666666631001246788888888887776 5777777777777655421 0 000 1
Q ss_pred cceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 378 VPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 378 ~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
.+++||++|.|. +++|.++++|++++.+
T Consensus 129 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~I 157 (192)
T PRK09677 129 SAVVIGQRVWIGENVTILPGVSIGNGCIV 157 (192)
T ss_pred CCeEEcCCcEECCCCEEcCCCEECCCCEE
Confidence 147788888887 8888888888888764
No 241
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.78 E-value=8.6e-05 Score=64.39 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=11.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++||++|+|. ++++.++ |++++
T Consensus 148 v~IG~~~vIgagsvV~~d--i~~~~ 170 (183)
T PRK10092 148 VTIGDNVVVASGAVVTKD--VPDNV 170 (183)
T ss_pred CEECCCCEECCCCEEccc--cCCCc
Confidence 5566665555 5555544 34444
No 242
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.77 E-value=3.3e-05 Score=61.62 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=16.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
++||.+|+++ -|.|-++..+++.+.++
T Consensus 114 aviGrrCVlkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 114 AVIGRRCVLKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred eeEcCceEhhhheeccCCcccCcccccC
Confidence 5566666665 56666666666666543
No 243
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.75 E-value=5.8e-05 Score=66.39 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=15.7
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
...++.++++ .++.+. +..||++|.|+ ++.|
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I 110 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTL 110 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEE
Confidence 3445555555 344442 35566666666 4444
No 244
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.72 E-value=0.00013 Score=56.79 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=18.5
Q ss_pred cceECCCCEEc-ceE---EeeeEEccCcEECCCcEEee
Q 014953 321 DSIISHGSFIT-SSF---IEHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~---i~~svig~~~~ig~~~~i~~ 354 (415)
++.|+.+++|+ ++. +.+++||++|.|+.++.+..
T Consensus 34 ~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 34 NCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 34444444444 222 34556777777777766654
No 245
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.66 E-value=0.00023 Score=56.02 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=6.5
Q ss_pred cceECCCCEEc
Q 014953 321 DSIISHGSFIT 331 (415)
Q Consensus 321 ~~~ig~~~~I~ 331 (415)
...||++|.|+
T Consensus 23 ~i~IG~~~~I~ 33 (107)
T cd05825 23 PVTIGSDACIS 33 (107)
T ss_pred ceEECCCCEEC
Confidence 35566666666
No 246
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.66 E-value=7e-05 Score=60.29 Aligned_cols=95 Identities=13% Similarity=0.253 Sum_probs=56.9
Q ss_pred CccCCCeee-cCCcc-ccceECCCCEEcc-eEEe----eeEEccCcEECCCcEEee--------------cEEeCCcccc
Q 014953 306 RRNLPPSKI-DDSKI-VDSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKD--------------TMMLGADFYE 364 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i-~~~~ig~~~~I~~-~~i~----~svig~~~~ig~~~~i~~--------------sii~~~~~~~ 364 (415)
..|.|.+.+ ..+.| ++..|+++|++.. +++. --+||+|+.|.+.+.|.+ -+|+.+.+-+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 445555555 33444 3677777777763 3331 357777777777777666 3455555556
Q ss_pred chhHHHh-hhhCCCc---ceEeCCCCEEe-eeEECCCeEEc
Q 014953 365 TDAEVAS-LLAEGRV---PVGIGENTKIK-YEQLKPICHIV 400 (415)
Q Consensus 365 ~~~~~~~-~~~~~~~---~~~Ig~~~~i~-~~~i~~~~~i~ 400 (415)
-||...+ -+|++.+ .+.+|+||.+. +|++|..++|.
T Consensus 89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 6665554 4555544 36677777776 67777666654
No 247
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.49 E-value=0.00039 Score=60.20 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=59.8
Q ss_pred CcccceeeCC--cceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcc
Q 014953 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (415)
Q Consensus 29 ~pK~llpv~g--~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (415)
.+|+|+++.| + |||+|+++.+. ..+++++|+++... .. . . .+ +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~-----~----~~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----P-----E----LP---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----c-----c----CC---CCEeccCCC--------
Confidence 5899999999 9 99999999876 46899999987542 11 0 0 01 123322211
Q ss_pred ccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
..|...++..++..... ...+.+++++||+ +.+.+ +..+++.+.
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 13666666555433211 0147999999999 55655 567766543
No 248
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.43 E-value=0.0018 Score=66.07 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhcc-----------CC-cEEEEEcccC-hhHHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS-----------GI-NKVYILTQYN-SASLN 70 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~-----------gi-~~I~vv~~~~-~~~i~ 70 (415)
.++-.|+||||.||||+ ...||.++|+ .|+ ++++..++++... +. -.++|-++.. ++...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 57888999999999998 7899999998 367 9999999887653 11 1456666654 57788
Q ss_pred HHHHhhccCCCCc-c---cCCceEEEecCc-cCC--CC--CC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcC
Q 014953 71 RHLARAYNYGSGV-T---FGDGCVEVLAAT-QTP--GE--AG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSG 137 (415)
Q Consensus 71 ~~l~~~~~~~~~~-~---~~~~~v~i~~~~-~~~--~~--~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~g 137 (415)
+++.++.-|+-.. + |....+..+... ... .+ .. .-.+.|.|+-..... ..++++...+.+.+.+...
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 8887643233111 0 000001111100 000 00 00 013446655443332 2222222234689999999
Q ss_pred Cee-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE--CCCCC----eEEEEEcCCcccccccccc-cccccc
Q 014953 138 DHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR----VLSFSEKPKGKDLKAMAVD-TTVLGL 209 (415)
Q Consensus 138 D~i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~----v~~~~ek~~~~~~~~~~~~-~~~~~~ 209 (415)
|.. ...-.-.++.++..+++++.+.+.+... .+.-|+++. ..+|+ ++.|.+.+...... ..+ ..+.
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a--~~p~g~l~-- 356 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRAT--GHPDGDVN-- 356 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhc--cCCCcccc--
Confidence 993 3222367888899999999887776632 355666654 23444 33454443221000 000 0000
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 210 SKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 210 ~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.... .+.+-.++...+++-..+.+.+++
T Consensus 357 -~~~~-~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 -DETG-YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred -cccc-cccCCCCceeeEeeHHHHHHHHHh
Confidence 0000 111223788888898888777764
No 249
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.43 E-value=0.00039 Score=72.88 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=42.3
Q ss_pred cceECCCCEEcceEE---eeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 321 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i---~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
.+.||+||.|+...+ ....||+||.|+++|.+.+..+.++. + .+. ..|+++ |.||.+|.|. ++.||+
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-l----~~g~i~IG~~---~~IG~~s~I~~g~~Igd 183 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-L----HTGPVTLGRD---AFIGTRSTLDIDTSIGD 183 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-e----eecCcEECCC---cEECCCCEEcCCCEECC
Confidence 345555555553111 23446666666666665543322111 0 011 133444 7777777775 777777
Q ss_pred CeEEcCCcccCc
Q 014953 396 ICHIVETKYDSS 407 (415)
Q Consensus 396 ~~~i~~~~~~~~ 407 (415)
++.|++++.+.+
T Consensus 184 ~a~vgagS~V~~ 195 (695)
T TIGR02353 184 GAQLGHGSALQG 195 (695)
T ss_pred CCEECCCCEecC
Confidence 777777776655
No 250
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.41 E-value=0.00013 Score=44.98 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=16.8
Q ss_pred ceECCCCEEc-ceEE-eeeEEccCcEECCCcEEe
Q 014953 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK 353 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~ 353 (415)
+.||++|.|+ ++.| .++.||++|.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4556666665 3443 345566666665555554
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.40 E-value=0.00044 Score=72.47 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=46.0
Q ss_pred cceECCCCEEcc-eEEe--eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFITS-SFIE--HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~~-~~i~--~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
++.||.+|.|+. ..++ -+.||++|.|++++.|..-. ..+..++- -...|+++ |.||.+|+|. ++.||++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~-~~~~~~~~---~~v~IG~~---~~IG~~a~V~~g~~IGd~ 669 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDRVMKS---DTVTIGDG---ATLGPGAIVLYGVVMGEG 669 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecc-cccccccc---CCeEECCC---CEECCCCEECCCCEECCC
Confidence 455566666652 2221 25777777777777764311 11111100 01233334 7777777775 7777777
Q ss_pred eEEcCCcccCc--cccccc
Q 014953 397 CHIVETKYDSS--TISRFS 413 (415)
Q Consensus 397 ~~i~~~~~~~~--~~~~~~ 413 (415)
+.|++++.+.+ .+.++|
T Consensus 670 a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 670 SVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred CEECCCCEEcCCcccCCCC
Confidence 77777776655 454443
No 252
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00056 Score=58.45 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=32.1
Q ss_pred CCccccCccCCCeee-c--CCcc-ccceECCCCEEc-ceEE---------eeeEEccCcEECCCcEEeecE
Q 014953 300 KPIYTSRRNLPPSKI-D--DSKI-VDSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLKDTM 356 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i-~--~~~i-~~~~ig~~~~I~-~~~i---------~~svig~~~~ig~~~~i~~si 356 (415)
-.+.+.+.|+++..| . +..| +.+.||++|.|. +++| .+=.||++|.||+||+|-+-|
T Consensus 68 ieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I 138 (194)
T COG1045 68 IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNI 138 (194)
T ss_pred eeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcce
Confidence 345555666666666 1 2222 245555555554 3333 234788888888887765543
No 253
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.06 E-value=0.00072 Score=40.92 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=10.1
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEE
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i 352 (415)
.||++|.|+ ++.+ ...||++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 344444444 2332 2444444444444443
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.02 E-value=0.00068 Score=41.65 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.0
Q ss_pred eEEccCcEECCCcE
Q 014953 338 SVVGIRSRINANVH 351 (415)
Q Consensus 338 svig~~~~ig~~~~ 351 (415)
+.||++|.|++++.
T Consensus 2 ~~Ig~~~~i~~~~~ 15 (36)
T PF00132_consen 2 VVIGDNVIIGPNAV 15 (36)
T ss_dssp EEEETTEEEETTEE
T ss_pred CEEcCCCEECCCcE
Confidence 44555555554444
No 255
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=96.98 E-value=0.0025 Score=55.68 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=22.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|-||.|+.|- +..||+++.|++++.+.+-+.+++
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~ 165 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYG 165 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEEeCccCCCe
Confidence 5666666665 667777777777777776666654
No 256
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.89 E-value=0.0035 Score=52.22 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.2
Q ss_pred eEEccCcEECCCcEE
Q 014953 338 SVVGIRSRINANVHL 352 (415)
Q Consensus 338 svig~~~~ig~~~~i 352 (415)
++||++|.||.++.|
T Consensus 74 ~~Ig~~~~Ig~~~~i 88 (145)
T cd03349 74 VIIGNDVWIGHGATI 88 (145)
T ss_pred cEECCCCEECCCCEE
Confidence 444555555544444
No 257
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.78 E-value=0.0022 Score=38.80 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=11.1
Q ss_pred eEEccCcEECCCcEEeecEEeCC
Q 014953 338 SVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 338 svig~~~~ig~~~~i~~sii~~~ 360 (415)
..||++|.||+++.| +..|+++
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~ 23 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDG 23 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TT
T ss_pred eEECCCEEECccccc-CCEEcCC
Confidence 467777777777776 3444444
No 258
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.72 E-value=0.00055 Score=55.28 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=43.3
Q ss_pred cceECCCCEEcc-eEEee--------------eEEccCcEECCCcEEeecEEeCCccccchhHHHh--hhhCCCcceEeC
Q 014953 321 DSIISHGSFITS-SFIEH--------------SVVGIRSRINANVHLKDTMMLGADFYETDAEVAS--LLAEGRVPVGIG 383 (415)
Q Consensus 321 ~~~ig~~~~I~~-~~i~~--------------svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~--~~~~~~~~~~Ig 383 (415)
.-+||+||.|++ +.|.| -+||.+-...-||...-.-++++.++++++.+.. .+..| |.||
T Consensus 47 PI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssg---C~vG 123 (190)
T KOG4042|consen 47 PIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSG---CSVG 123 (190)
T ss_pred CEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCC---ceec
Confidence 567899999874 55533 4666666555566666666666666666554431 22333 5555
Q ss_pred CCCEEe-eeEECCCeEEcC
Q 014953 384 ENTKIK-YEQLKPICHIVE 401 (415)
Q Consensus 384 ~~~~i~-~~~i~~~~~i~~ 401 (415)
..|.+. .-.+-++..|..
T Consensus 124 A~c~v~~~q~lpent~vYg 142 (190)
T KOG4042|consen 124 AKCTVFSHQNLPENTSVYG 142 (190)
T ss_pred cceEEecccccCCcceEEc
Confidence 555554 333444444433
No 259
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.69 E-value=0.002 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=12.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+.+|.||+|. +|++.+-++|-+++.
T Consensus 108 Vh~GknaviGrrCVlkdCc~ild~tV 133 (184)
T KOG3121|consen 108 VHLGKNAVIGRRCVLKDCCRILDDTV 133 (184)
T ss_pred eEeccceeEcCceEhhhheeccCCcc
Confidence 4455555554 455555555555443
No 260
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0033 Score=54.57 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=19.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTIS 410 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~ 410 (415)
|-||.++.|- |..||+|++|++|+.+-+-+-
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV~kDVP 238 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP 238 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceEEeccC
Confidence 6666666654 667777777777766555443
No 261
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.23 Score=47.53 Aligned_cols=212 Identities=15% Similarity=0.234 Sum_probs=107.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccCC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~~ 80 (415)
.++..+=|-||.|+-|+ ...||++++|-+-...++-++.+... .+++ ..++-.++. .++..+.+.++..
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~-- 176 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG-- 176 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC--
Confidence 45556778999999998 88999999997654777766554443 2343 234444444 4566666665431
Q ss_pred CCccc---CC-ceE-----EEecCccCCCC-CCCccc-cchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecc-cChH
Q 014953 81 SGVTF---GD-GCV-----EVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (415)
Q Consensus 81 ~~~~~---~~-~~v-----~i~~~~~~~~~-~~~~~~-~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~-~~l~ 146 (415)
...++ .. .+- +.++......+ ....|| .|.|+-..... ..++..-..+.+.++|.+.|.+.. .||
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL- 255 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL- 255 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-
Confidence 11111 10 000 11222111111 113443 46665433221 111111112468999999999765 444
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCCeEE--EEEcCCcccccccccccccccccccccccccceeeee
Q 014953 147 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS--FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 224 (415)
Q Consensus 147 ~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~--~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 224 (415)
.++++....+.+..|=+++..... ..-|.+. +-+|++.. +..-|..... . +. . .......++.
T Consensus 256 ~ILn~~i~~~~ey~MEvTdKT~aD-vKgGtLi-~y~G~lrlLEiaQVP~ehv~-e------Fk-----S-~kkFkifNTN 320 (498)
T KOG2638|consen 256 NILNHVINNNIEYLMEVTDKTRAD-VKGGTLI-QYEGKLRLLEIAQVPKEHVD-E------FK-----S-IKKFKIFNTN 320 (498)
T ss_pred HHHHHHhcCCCceEEEecccchhh-cccceEE-eecCEEEEEEeccCChhHhh-h------hc-----c-ceeEEEeccC
Confidence 467777777777777665544321 1223333 23455443 3333332110 0 00 0 0012345566
Q ss_pred EEEEeHHHHHHHHhh
Q 014953 225 VYLFKKEILLNLLRW 239 (415)
Q Consensus 225 iyi~~~~~l~~~l~~ 239 (415)
--+++-..+++++++
T Consensus 321 NlWinLkavKrlve~ 335 (498)
T KOG2638|consen 321 NLWINLKAVKKLVEE 335 (498)
T ss_pred CeEEehHHHHHHhhc
Confidence 666777777777765
No 262
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.51 E-value=0.0074 Score=52.73 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=37.7
Q ss_pred CccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-e----
Q 014953 317 SKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-Y---- 390 (415)
Q Consensus 317 ~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~---- 390 (415)
+.++-.++|+....+ ++.|...+++.+|.|+.+|++.+-++.++. +.||+++.|. .
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 333333444444444 344445555666666666666665555554 6666666655 2
Q ss_pred --eEECCCeEEcCCcccCc
Q 014953 391 --EQLKPICHIVETKYDSS 407 (415)
Q Consensus 391 --~~i~~~~~i~~~~~~~~ 407 (415)
.-||.++.|..+-..+.
T Consensus 91 gdLdig~dV~Ieggfva~g 109 (277)
T COG4801 91 GDLDIGADVIIEGGFVAKG 109 (277)
T ss_pred cccccccceEEecCeeecc
Confidence 22344555555544443
No 263
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.41 E-value=0.0092 Score=52.13 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=49.1
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEE
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHI 399 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i 399 (415)
+.+||+|+.+. ..++++.+.+|++++|.+.++.++ +.|+.+|.+. |.++..++.|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 55566655554 579999999999999999999988 8888888887 8888888888
Q ss_pred cCCccc
Q 014953 400 VETKYD 405 (415)
Q Consensus 400 ~~~~~~ 405 (415)
|+.+..
T Consensus 78 GE~~sI 83 (277)
T COG4801 78 GEFSSI 83 (277)
T ss_pred ecccee
Confidence 887753
No 264
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.01 Score=51.64 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.3
Q ss_pred eEEccCcEECCCc
Q 014953 338 SVVGIRSRINANV 350 (415)
Q Consensus 338 svig~~~~ig~~~ 350 (415)
-.||+||.||.|+
T Consensus 201 P~Igd~vliGaGv 213 (269)
T KOG4750|consen 201 PKIGDNVLIGAGV 213 (269)
T ss_pred CcccCCeEEcccc
Confidence 4667777777553
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.74 E-value=0.021 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred eeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhh
Q 014953 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120 (415)
Q Consensus 41 pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~ 120 (415)
||++|+++.+...+++++++++++ +.+.+++.. ++ +.++.... .|.+.+++.++..
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~---------~~---v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN---------LG---APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh---------cC---CEEEecCC----------CCHHHHHHHHHHH
Confidence 899999999999888888888864 344444321 11 22332111 2899999999877
Q ss_pred hcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHH
Q 014953 121 FEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 153 (415)
Q Consensus 121 i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~ 153 (415)
+.. ..+.++++.||+ +... .+.++++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 135899999999 4444 4778877653
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.47 E-value=0.13 Score=41.77 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=66.7
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|..|.++++.++++++.+.+ ..+++++.+...+...+.+...... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 4566666689999999999887 7789998888777666666543211 001 11221111 2588
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
+.++..++.... .+.++++.+|.++..+ +..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 999988887764 5889999999988887 455434433
No 267
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=95.23 E-value=0.069 Score=46.52 Aligned_cols=80 Identities=23% Similarity=0.148 Sum_probs=43.4
Q ss_pred cceECCCCEEc-ceEE---eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i---~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
+..+|.+|.++ ++.+ .+..||+++.+++++.|... .|...............-|++||++|.|. +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 44556666665 3332 23446666666655555442 11111111111002222258889988888 888888
Q ss_pred CeEEcCCccc
Q 014953 396 ICHIVETKYD 405 (415)
Q Consensus 396 ~~~i~~~~~~ 405 (415)
+++||+++..
T Consensus 142 GV~IG~gavi 151 (190)
T COG0110 142 GVTIGEGAVI 151 (190)
T ss_pred CEEECCCcEE
Confidence 8888888853
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.71 E-value=0.62 Score=38.59 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=70.9
Q ss_pred ceeeCCcceeehhehhhhhcc--CCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~--gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|.-|....|..+|+.+.++ ...+|+|+-+...+...+.+.+... ....+.++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-------~~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-------SDPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-------CSTTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-------ccccccccccccc---------ccc
Confidence 456667656788888888876 4457777766554444454444321 0112455543333 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEEEE
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.+...+..... .+.++++..|.+...+ +..+++.+.+.+.++.+....
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899988888775 4799999999988888 788999888877765554443
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=92.18 E-value=0.24 Score=48.85 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 332 SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 332 ~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
++.|.+|+|..++.||+++.|.+|.+.++ +.||+||+|.++-+....
T Consensus 279 ~~~VinSil~~~~~vg~~svIe~s~l~~~-------------------~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 279 SSCVINSILEGGVSVGPGSVIEHSHLGGP-------------------WSIGSNCIISGVDINSWS 325 (414)
T ss_pred CeeEEEeEecCCceECCCCEEEeeecCCC-------------------CEECCCCEEECCcccccc
Confidence 46667899999999999999999999999 899999999988555443
No 270
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.71 E-value=4.7 Score=33.28 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=64.3
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|.-|++.++..+++.+.+.. ..+++|+.....+...+.+.+... .+.++..... .|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~~---------~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGEN---------LGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCCC---------cCh
Confidence 3566666578888888887753 457777766555555555543321 1333322222 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcC
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~ 156 (415)
+.++..++...+ .+.++++..|.....+ +..+++.+.+.+
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 899988887764 5889999999987777 677777655544
No 271
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.32 E-value=3.6 Score=36.64 Aligned_cols=97 Identities=11% Similarity=0.202 Sum_probs=63.0
Q ss_pred ceeeCCcc-eeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 33 AVPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 33 llpv~g~~-pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
++|.-|.. +.+..+|+.+.+....+|+||.....+...+.+...... ..+.++... . .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~-~---------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVP-H---------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecC-C---------CChH
Confidence 45666664 678888888877655688888776666555554322111 113333221 1 3777
Q ss_pred HHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
.++..++...+ .+.++++.+|.....+ +..+++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 88877766554 5899999999988887 677777665
No 272
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=86.55 E-value=1.1 Score=48.65 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=43.5
Q ss_pred eEEeeeEEccCcEECCCcE-EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeE-ECCCeEEcCCcc
Q 014953 333 SFIEHSVVGIRSRINANVH-LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQ-LKPICHIVETKY 404 (415)
Q Consensus 333 ~~i~~svig~~~~ig~~~~-i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~-i~~~~~i~~~~~ 404 (415)
+++.||++..++.+++++. |++|.|.++ +.||.+|+|.++. ..-+.+|++++-
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~c 386 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVC 386 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcE
Confidence 5678999999999999855 888999999 8999999998875 333577777763
No 273
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=86.40 E-value=5 Score=34.02 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=63.7
Q ss_pred eeeCCcceeehhehhhhhcc----CCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 34 lpv~g~~pli~~~l~~l~~~----gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
+|..+....+..+|+.+.+. ...+|+|+-+...+...+.+.... . ++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~---~--~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA---A--RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH---H--hCC--CeEEEEccCC---------CC
Confidence 45555434566677777765 356777776554444444333211 0 111 1233333332 47
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
.+.++..+..... .+.++++.+|.....+ +.++++...+.+.++.+..
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 8888888877654 4889999999977766 7888886555555554443
No 274
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.32 E-value=6.5 Score=35.15 Aligned_cols=107 Identities=8% Similarity=0.132 Sum_probs=63.9
Q ss_pred ceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (415)
++|.-|.++.+..+++.+.+... -+|+|+-+...+...+.+.... .. . ..+.++.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~--~~---~--~~v~~i~~~~----------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA--AK---D--PRIRLIDNPK----------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH--hc---C--CeEEEEeCCC----------C
Confidence 45666654677777888876543 3677776555554444443321 00 0 1134432211 2
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
|-+.++..+....+ .+.++++.+|.....+ +..+++.+.+.+..+...
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 116 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVGG 116 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEec
Confidence 56677777766654 5899999999987776 788887666655554433
No 275
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=85.06 E-value=6.3 Score=32.44 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=60.4
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|.-|.+..|..+|+.+.+.. .-+++|+-....+...+.+.+..... . ..+.++..... .|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~-----~-~~~~~~~~~~~---------~g~ 66 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY-----I-RRVLVVRDKEN---------GGK 66 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc-----c-ceEEEEEeccc---------CCc
Confidence 3566665467778888887764 34777776555444444443321100 0 01222222222 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
+.++..++.... .+.++++.+|.+...+ +..++..+.+.
T Consensus 67 ~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 67 AGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred hHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888888877664 5889999999987776 67774555444
No 276
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=83.89 E-value=12 Score=33.62 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=65.6
Q ss_pred cccccCCcc--cceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCc
Q 014953 23 YPLTKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAAT 96 (415)
Q Consensus 23 ~plt~~~pK--~llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~ 96 (415)
.+-....|+ .++|.-|....|..+|+.+.+... -+++|+.....+...+.+.+.. .. .+.++...
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~------~v~~i~~~ 92 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYA---DK------GVKLLRFP 92 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHh---hC------cEEEEEcC
Confidence 334444555 567777764566777777765432 2577776555544444443211 10 13333322
Q ss_pred cCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 97 QTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 97 ~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
.. .|.+.++..+..... .+.++++.+|.+...+ +.++++...+.
T Consensus 93 ~~---------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 137 (251)
T cd06439 93 ER---------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFADP 137 (251)
T ss_pred CC---------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhcCC
Confidence 22 478888888877664 4899999999988776 78888776433
No 277
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=82.56 E-value=0.85 Score=44.72 Aligned_cols=67 Identities=28% Similarity=0.418 Sum_probs=45.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCc--ceeehhehhhhhc----------cCCc-EEEEEcccC-hhHHHH
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGA--YRLIDVPMSNCIN----------SGIN-KVYILTQYN-SASLNR 71 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~--~pli~~~l~~l~~----------~gi~-~I~vv~~~~-~~~i~~ 71 (415)
..+..++++|||+|||+. ...||.+.|++-. ..++++..+.+.. .|.+ ..+|-++.. .+.-.+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 356789999999999998 7899999999853 1577777665542 1222 334445433 466677
Q ss_pred HHHh
Q 014953 72 HLAR 75 (415)
Q Consensus 72 ~l~~ 75 (415)
|+..
T Consensus 172 ~f~~ 175 (477)
T KOG2388|consen 172 YFES 175 (477)
T ss_pred HHhh
Confidence 7764
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=80.91 E-value=15 Score=32.23 Aligned_cols=108 Identities=9% Similarity=0.095 Sum_probs=62.2
Q ss_pred ceeeCCcceeehhehhhhhccC---CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g---i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
.+|.-|....|..+++.+.+.- .-+|+||-....+...+.+..... . . ..+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~-~----~--~~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK-E----Y--PRVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH-h----C--CceEEEecCCC---------CC
Confidence 3566665456677777776532 246777754433333333322110 0 0 01333332222 48
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
-+.++..++.... .+.++++.+|.....+ +..+++.....+.++...
T Consensus 66 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 66 LGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred hHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8899988877654 4788999999977766 678887755555554443
No 279
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=80.84 E-value=10 Score=33.13 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.7
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
.|.+.++..++.... .+.++++.+|...+.+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 488999998887765 4899999999977766 7888877555666555543
No 280
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=79.25 E-value=14 Score=34.42 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=62.3
Q ss_pred ceeeCCcc-eeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAY-RLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~-pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
.+|.-|.. ..|..+|+.+.+.-. .+|+||-+...+...+.+.+..... .. ..+.++.....
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~---~~--~~v~vi~~~~n--------- 68 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK---YL--PKVKVLRLKKR--------- 68 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh---cC--CcEEEEEcCCC---------
Confidence 35666663 477777888765321 3787775544333333332210000 00 12455543332
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCC
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~ 157 (415)
.|-+.+...++...+ .+.++++++|+....+ |..+++...+.+.
T Consensus 69 ~G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 69 EGLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CCHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 488888877776554 5899999999987776 7888887766554
No 281
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=77.98 E-value=22 Score=31.80 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=37.1
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
.|.+.++..++...+ .+.++++.+|.....+ +.++++.+.+.+.++.++.
T Consensus 70 ~G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 70 RTKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred CchHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 478888888877653 5899999999988887 6888887765445554443
No 282
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=77.18 E-value=24 Score=30.26 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=58.9
Q ss_pred ceeeCCcc--eeehhehhhhhccC--CcEEEEEcccC-hhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAY--RLIDVPMSNCINSG--INKVYILTQYN-SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~--pli~~~l~~l~~~g--i~~I~vv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
++|+.|.. ..|..+|+.+.+.. ..+++||-... .+...+.+.... . ++. +.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~--~---~~~---i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFK--R---KLP---LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHH--h---cCC---eEEEEcCcc---------
Confidence 46777651 26888888887754 24666654432 333333332211 0 011 333332222
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
.|.+.+...+....+ .+.++++.+|.+...+ +..+++...++
T Consensus 66 ~G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 66 RGLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 488888888876543 5889999999987777 67777766443
No 283
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.48 E-value=16 Score=32.87 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
.|-+.++..++.... .+.++++.+|...+.+ +.++++...+.+++++..
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 488888888876554 5889999999987766 678888776666666544
No 284
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.24 E-value=19 Score=30.65 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=57.4
Q ss_pred eeeCCcceeehhehhhhhccCCc--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 34 lpv~g~~pli~~~l~~l~~~gi~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
+|.-|....+..+|+.+.+.... +|+||-+...+...+.+.+.. . ..+.+.. ... .|.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~---~------~~~~~~~-~~~---------~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE---D------KITYWIS-EPD---------KGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH---h------hcEEEEe-cCC---------cCHH
Confidence 45555535677888888765544 566664433344444443211 0 0122221 111 4888
Q ss_pred HHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
.++..++...+ .+.++++.+|.....+ +..+++.....
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 88888887654 5899999999977666 77777544443
No 285
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.87 E-value=24 Score=30.84 Aligned_cols=106 Identities=8% Similarity=0.048 Sum_probs=60.5
Q ss_pred ceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHH-hhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLA-RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~-~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
++|..|....|..+|+.+.+... -+|+|+-....+...+.+. ... . . ...+.++..... ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~-~-----~~~v~~~~~~~~-------~~ 67 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA-K-P-----NFQLKILNNSRV-------SI 67 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh-C-C-----CcceEEeeccCc-------cc
Confidence 46677764667788888765422 3566665543333333332 110 0 0 112344433221 01
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCc
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~ 158 (415)
.|-..++..+..... .+.++++.+|.+...+ +..+++.+.+.+..
T Consensus 68 ~g~~~a~n~g~~~~~------~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 68 SGKKNALTTAIKAAK------GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred chhHHHHHHHHHHhc------CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 466777776665443 5899999999988877 68888866655443
No 286
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.81 E-value=24 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=30.6
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHH
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h 152 (415)
.|.+.++..++.... .+.++++..|.....+ +..+++.+
T Consensus 69 ~g~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 69 GGISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CCHHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHH
Confidence 478888887776654 5889999999988777 68888776
No 287
>PRK10073 putative glycosyl transferase; Provisional
Probab=72.66 E-value=20 Score=34.15 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=62.2
Q ss_pred ceeeCCcceeehhehhhhhccCCc--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|+-|....|..+|+.+.+.... +|+||-....+.-.+.+.+.. -. . ..+.++.. +. .|.
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~-~~----~--~~i~vi~~-~n---------~G~ 73 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA-EN----Y--PHVRLLHQ-AN---------AGV 73 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH-hh----C--CCEEEEEC-CC---------CCh
Confidence 355555435777888888765433 566654332222222222111 00 0 12444432 11 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
+.|...++...+ .+.++++.+|-....+ +..+++...+.+.++.+.
T Consensus 74 ~~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 74 SVARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 888887777654 5899999999987777 677888766666665543
No 288
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=70.26 E-value=28 Score=29.32 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=34.2
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
.|.+.++..++.... .+.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 66 ~G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 66 FGQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CCcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 488889988876654 4899999999987766 6777776 444555443
No 289
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=69.22 E-value=27 Score=34.84 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=61.8
Q ss_pred cceeeCCcceeehhehhhhhccCC--cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 32 PAVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 32 ~llpv~g~~pli~~~l~~l~~~gi--~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
.++|..|...-+..+++.+.+..- -+|+|+.....+...+.+.+... +. ..+.++....+ .|
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-----~~--~~v~vv~~~~n---------~G 142 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-----ED--PRLRVIHLAHN---------QG 142 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-----hC--CCEEEEEeCCC---------CC
Confidence 567878864567778888776432 26777755444333332222110 00 01344432222 48
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
-+.++..+....+ .+.++++.+|.+.+.| +.++++.+.+.
T Consensus 143 ka~AlN~gl~~a~------~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 143 KAIALRMGAAAAR------SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred HHHHHHHHHHhCC------CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 8888888876543 5899999999998888 67777766543
No 290
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=69.20 E-value=52 Score=28.28 Aligned_cols=103 Identities=9% Similarity=0.025 Sum_probs=51.4
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|+-|..+-|..+|+.+.+.- --+|+||.....+.-.+.+.+... .+....+.++...... | ..+.
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~~~~~---g---~~~~ 74 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIA-----KYPNVDARLLIGGEKV---G---INPK 74 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHH-----HCCCCcEEEEecCCcC---C---CCHh
Confidence 4566654356677777776532 236766655444322222221100 0111113333222221 0 0123
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHH
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h 152 (415)
+.++..+..... .+.++++.+|...+.+ |..+++..
T Consensus 75 ~~~~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 75 VNNLIKGYEEAR------YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCceEChhHHHHHHHHh
Confidence 345545554433 5889999999987776 67777654
No 291
>PRK11204 N-glycosyltransferase; Provisional
Probab=69.14 E-value=29 Score=34.15 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=61.3
Q ss_pred ceeeCCcceeehhehhhhhccCC--cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi--~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|.-|....+..+++.+.+... -+|+|+-....+...+.+.+... ++ ..+.++...+. .|-
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~-----~~--~~v~~i~~~~n---------~Gk 122 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAA-----QI--PRLRVIHLAEN---------QGK 122 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHH-----hC--CcEEEEEcCCC---------CCH
Confidence 56666654677888888876542 26766655444333333322110 00 01344432222 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
++++..+....+ .+.++++.+|.+...| +.++++.+.+.
T Consensus 123 a~aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 123 ANALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 899988877654 5899999999988888 68888776543
No 292
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.99 E-value=36 Score=29.61 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=56.3
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|+-|.++.|..+|+.+.+.- .-+|+|+-+...+...+.+.+ . .+.++. .+ .|.
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~-----------~~~~~~--~~---------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A-----------GVVVIS--SP---------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C-----------CeEEEe--CC---------cCH
Confidence 4566665456777788877643 246777654444444444432 0 122221 11 367
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCC
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~ 157 (415)
+.+...+..... .+.++++..|.....+ +.+++......+.
T Consensus 61 ~~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 61 ARQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred HHHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 777776766554 5899999999977776 5666555544443
No 293
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=65.85 E-value=82 Score=26.61 Aligned_cols=106 Identities=10% Similarity=0.134 Sum_probs=59.7
Q ss_pred ceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (415)
++|.-|....|.-+|+++.+... -+|+|+.....+...+.+.. + . .. +........ .
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-~--~------~~-~~~~~~~~~---------~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-A--G------AT-VLERHDPER---------R 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-c--C------Ce-EEEeCCCCC---------C
Confidence 45666653567777777766432 35766655544444443322 1 1 11 111111111 4
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcE
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ 159 (415)
|.+.++..+....... ....+.++++.+|.....+ +..+++.+.+ +.++
T Consensus 63 gk~~aln~g~~~a~~~-~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 63 GKGYALDFGFRHLLNL-ADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred CHHHHHHHHHHHHHhc-CCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 7888888887665300 0125789999999988887 6777776654 4443
No 294
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=65.65 E-value=36 Score=28.56 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=55.6
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|.-|....+..+|+++.+.- .-+|+|+-....+...+.+.+... .+....+.+...... .|.
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~ 67 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKS-----QFPIPIKHVWQEDEG---------FRK 67 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHh-----hcCCceEEEEcCCcc---------hhH
Confidence 3566665467788888887642 246777655444443344332110 001111222221111 256
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHH
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h 152 (415)
+.++..+..... .+.++++.+|.+...+ +..+++.+
T Consensus 68 ~~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 68 AKIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 666666666544 5899999999988777 57777655
No 295
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.82 E-value=49 Score=28.38 Aligned_cols=100 Identities=8% Similarity=0.027 Sum_probs=56.4
Q ss_pred eeeCCcceeehhehhhhhccCC--cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 34 VPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 34 lpv~g~~pli~~~l~~l~~~gi--~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
+|.-|....|..+|+.+.+... .+|+|+-+...+...+.+.+.. . ... +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~---~--~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG---D--LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc---C--CCc---eEEEECccc---------cchh
Confidence 4444543567777888876432 3677765544445555554321 1 111 333322222 4666
Q ss_pred HHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
.++..++..... ...+.++++..|.....+ +.++++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 666666554421 125789999999988877 567776655
No 296
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=63.82 E-value=99 Score=26.85 Aligned_cols=105 Identities=13% Similarity=0.199 Sum_probs=63.9
Q ss_pred Ccceeehhehhhhhc-cCCc-EEEEEcccCh---hHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHH
Q 014953 38 GAYRLIDVPMSNCIN-SGIN-KVYILTQYNS---ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (415)
Q Consensus 38 g~~pli~~~l~~l~~-~gi~-~I~vv~~~~~---~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~ 112 (415)
|- |++-|.+..... .|.+ +|++|=.... .++.+.+.+.+ +...+-+.+-... +|.+.
T Consensus 17 Nl-pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--------g~d~i~l~pR~~k---------lGLgt 78 (238)
T KOG2978|consen 17 NL-PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--------GEDNILLKPRTKK---------LGLGT 78 (238)
T ss_pred CC-eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--------CCCcEEEEeccCc---------ccchH
Confidence 45 677777666554 5665 5655533221 34555554433 2223444432222 68888
Q ss_pred HHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 113 al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
|..+++.+.+ .+.++++.+|.--... +.++++...+.+.+.+....-.
T Consensus 79 Ay~hgl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa 127 (238)
T KOG2978|consen 79 AYIHGLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYA 127 (238)
T ss_pred HHHhhhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEc
Confidence 8888887765 3677888898755444 6889988888777777665443
No 297
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=63.74 E-value=49 Score=29.17 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred eeeCCcc-eeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHH
Q 014953 34 VPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (415)
Q Consensus 34 lpv~g~~-pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~ 112 (415)
+|.-|.. ..|..+|+.+.+. ..+|+|+=+...+....... . ....+.++..... .|-+.
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~-~---------~~~~i~~i~~~~n---------~G~~~ 62 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLR-L---------NSEKIELIHLGEN---------LGIAK 62 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhh-c---------cCCcEEEEECCCc---------eehHH
Confidence 3444443 4667777777766 45676664433332222221 1 0012444443332 47888
Q ss_pred HHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHH
Q 014953 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFV 149 (415)
Q Consensus 113 al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l 149 (415)
+...+...... ...+.++++.+|...+.+ +..++
T Consensus 63 a~N~g~~~a~~---~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAALE---NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHHh---CCCCEEEEECCCCCcCHhHHHHHH
Confidence 88777766531 024899999999988877 66664
No 298
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.79 E-value=61 Score=27.87 Aligned_cols=101 Identities=6% Similarity=0.034 Sum_probs=56.1
Q ss_pred ceeeCCcceeehhehhhhhccCC--cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi--~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|.-|....|..+|+.+.+... -+|+|+-....+...+.+.+.. . +.. ..+.++..... .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~-~----~~~-~~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYI-D----KDP-FIIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHH-h----cCC-ceEEEEeCCCC---------ccH
Confidence 45666664567777888776432 2566664433332222222211 0 010 01233322222 478
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHH
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~ 154 (415)
+.++..+....+ .+.++++..|.....+ +..+++...+
T Consensus 68 ~~~~n~g~~~~~------g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 68 ARNFESLLQAAD------GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 888877755443 5889999999977777 7888876333
No 299
>PRK10018 putative glycosyl transferase; Provisional
Probab=60.96 E-value=90 Score=28.96 Aligned_cols=97 Identities=11% Similarity=0.156 Sum_probs=56.9
Q ss_pred eeeCCcceeehhehhhhhccCCc--EEEEEcccCh--hHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNS--ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 34 lpv~g~~pli~~~l~~l~~~gi~--~I~vv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
+|.-|....|..+|+.+.+.-.. +++||-.... +.+.++... + .+ ..+.++..... .|
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~-~--~~------~ri~~i~~~~n---------~G 72 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA-L--ND------PRITYIHNDIN---------SG 72 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHH-c--CC------CCEEEEECCCC---------CC
Confidence 45555535667778777765443 5655533222 233344332 1 11 12444433322 48
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHH
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~ 154 (415)
.+.+...++.... .+.++++.+|.....+ +..+++...+
T Consensus 73 ~~~a~N~gi~~a~------g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLAQ------GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHcC------CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 8888877776654 5899999999988777 7777775544
No 300
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=59.96 E-value=79 Score=27.67 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=57.5
Q ss_pred ceeeCCcc-eeehhehhhhhccCCc----EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAY-RLIDVPMSNCINSGIN----KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~-pli~~~l~~l~~~gi~----~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
.+|.-|.. .++..+++.+...... +|+||-....+...+.+.... . .+ .+.++......
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~---~~~~~~~~~~~-------- 69 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG---V--EY---GYRYLTRPDNR-------- 69 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh---c--cc---CceEEEeCCCC--------
Confidence 45666641 3677788888765433 677776655555555444321 1 11 12222222111
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHH
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~ 154 (415)
.+.++++..++...+ .+.++++..|.+.+.+ +..+++...+
T Consensus 70 ~~~~~~~n~~~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 70 HAKAGNLNNALAHTT------GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCcHHHHHHHHHhCC------CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 234556666665543 5899999999988888 6777776654
No 301
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=59.58 E-value=13 Score=32.81 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred ceeeCCcceeehhehhhhhcc--CCcEEEEEcccChhHHHH---HHHhhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNR---HLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~--gi~~I~vv~~~~~~~i~~---~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
++|..|..+.+..+|+.+.+. .--+|+|+.....+...+ .+...+ ....+.++...... ..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~------g~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNP------GP 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----H------HH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCC------Cc
Confidence 456666546777777777753 223666666544333222 222222 11124554433221 01
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCC
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~ 157 (415)
.+.+.++..++...+ .+.++++..|.+.+.+ |..+++.+...+.
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGV 116 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS-
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCC
Confidence 245677877777664 5899999999988777 6888887733433
No 302
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=59.22 E-value=76 Score=31.58 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=59.6
Q ss_pred ceeeCCcceeehhehhhhhccCC--c--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI--N--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi--~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (415)
++|.-|....+..+++.+.+... + +|+|+-+...+...+.+.+... .+. .+.+...... .
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-----~~~--~v~v~~~~~~---------~ 117 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-----EFP--GLSLRYMNSD---------Q 117 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-----hCC--CeEEEEeCCC---------C
Confidence 45666654677788888876532 2 4666644333333333221110 011 1222211121 4
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcC
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~ 156 (415)
|-+.|+..+....+ .+.++++.+|.+.+.| +.++++.+.+.+
T Consensus 118 Gka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 118 GKAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CHHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 88999988887654 5789999999988887 688887775443
No 303
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=56.74 E-value=61 Score=28.61 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred ceeeCCcce-eehhehhhhhccCC--cEEEEEcccChh-HH----HHHHHhhccCCCCcccCCceEEEecCccCCCCCCC
Q 014953 33 AVPIGGAYR-LIDVPMSNCINSGI--NKVYILTQYNSA-SL----NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGK 104 (415)
Q Consensus 33 llpv~g~~p-li~~~l~~l~~~gi--~~I~vv~~~~~~-~i----~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 104 (415)
++|.-|..| +|..+++.+.+... -+|+||-+...+ .. .++..+ . .. .+.++.....
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~--~~-------~i~~i~~~~~------ 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-L--GE-------RFRFFHVEPL------ 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-h--CC-------cEEEEEcCCC------
Confidence 467777632 68888888887643 367666544332 22 233221 1 11 1333322222
Q ss_pred ccccc-hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 105 RWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 105 ~~~~G-t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
.| .++++..+...... ..+.++++.+|.....+ |.+++....
T Consensus 67 ---~G~~~~a~n~g~~~a~~----~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 ---PGAKAGALNYALERTAP----DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred ---CCCchHHHHHHHHhcCC----CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 24 47778777765531 14789999999988777 788887664
No 304
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=55.99 E-value=38 Score=28.08 Aligned_cols=27 Identities=7% Similarity=-0.033 Sum_probs=15.3
Q ss_pred EEeeeEEccC-cEECCCcEEeecEEeCC
Q 014953 334 FIEHSVVGIR-SRINANVHLKDTMMLGA 360 (415)
Q Consensus 334 ~i~~svig~~-~~ig~~~~i~~sii~~~ 360 (415)
.++..+..++ +.|++..+|.+.+..+.
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~gei~a~~ 74 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGEIEAEH 74 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEEEEeCE
Confidence 4444555555 55666666666655554
No 305
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=55.30 E-value=33 Score=26.18 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=19.4
Q ss_pred eEeCCCCEEeeeEECCCeEEcCCcccCcc
Q 014953 380 VGIGENTKIKYEQLKPICHIVETKYDSST 408 (415)
Q Consensus 380 ~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~ 408 (415)
+.|...+++.+.+..+...|.++......
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i~G~ 98 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASINGN 98 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEEEEE
Confidence 56777777776666666777777665443
No 306
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=53.37 E-value=1e+02 Score=29.96 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=64.1
Q ss_pred ceeeCCcceeehhehhhhhccCC---cEEEEEcccChhH---HHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSAS---LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi---~~I~vv~~~~~~~---i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (415)
.+|.-|....|..+++.+.+... -+|+||-+...+. +.+.+.+.+ .. ...+.++.....+ . .
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~--~~-----~~~i~vi~~~~~~--~---g 112 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY--GR-----GDRLTVVSGQPLP--P---G 112 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc--CC-----CCcEEEecCCCCC--C---C
Confidence 55666644678888888876532 3677776544433 322222221 00 0124444322111 0 1
Q ss_pred ccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEE
Q 014953 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~t 160 (415)
..|-..++..+.....+. ....+.++++.+|.....+ +.++++...+.+.++.
T Consensus 113 ~~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 113 WSGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CcchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 136666777776654311 0114789999999988777 7888887776665543
No 307
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=53.31 E-value=72 Score=30.93 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=57.2
Q ss_pred ceeeCCcceeehhehhhhhccCC--cEEEEEcccChhH---HHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSAS---LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi--~~I~vv~~~~~~~---i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (415)
++|.-|..+.|..+|+.+.++.. -+|+++.....+. +.+.+.+.+ ....+.++...+..+ .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHG------P 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCC------C
Confidence 67777765778888888877543 3676655443332 222222222 111244443222211 1
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcC
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~ 156 (415)
.+-..++.++....+ .+.++++.+|.....+ ++++++...+.+
T Consensus 112 ~~K~~~l~~~~~~a~------ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 112 NRKVSNLINMLPHAR------HDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred ChHHHHHHHHHHhcc------CCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 233445544433332 5899999999988888 677777664333
No 308
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=52.23 E-value=1.1e+02 Score=27.16 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred ceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHH
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~ 112 (415)
++|.-|....|..+|+.+... ..+|+|+-+...+...+.+. .+ + +.++.. .. .|-+.
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~-~~--------~---~~v~~~-~~---------~g~~~ 61 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAK-EY--------G---AKVYQR-WW---------DGFGA 61 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHH-Hc--------C---CEEEEC-CC---------CChHH
Confidence 455555435667777777543 25788776554443333332 11 1 223222 11 47788
Q ss_pred HHHHhhhhhcCCCCCCcCeEEEEcCCeecccCh-HHHHHHHHHc
Q 014953 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQS 155 (415)
Q Consensus 113 al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~h~~~ 155 (415)
+...++.... .+.++++.+|.+...++ ..+.+...+.
T Consensus 62 ~~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 62 QRNFALELAT------NDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred HHHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 8877776654 47999999999887774 5555544433
No 309
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=51.15 E-value=93 Score=28.51 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=53.7
Q ss_pred eehhehhhhhccCCcEEEEEcccC--hhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhh
Q 014953 42 LIDVPMSNCINSGINKVYILTQYN--SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHW 119 (415)
Q Consensus 42 li~~~l~~l~~~gi~~I~vv~~~~--~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~ 119 (415)
.|..+++.+.+. ..+|+||=+.. .+.+.+.+.. . ..+.++..... .|-+.|...++.
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-~----------~~i~~i~~~~N---------~G~a~a~N~Gi~ 67 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-G----------QKIALIHLGDN---------QGIAGAQNQGLD 67 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-C----------CCeEEEECCCC---------cchHHHHHHHHH
Confidence 455566666654 35676665442 2233332211 0 12555543333 488888888876
Q ss_pred hhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcC
Q 014953 120 LFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 120 ~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~ 156 (415)
..... ..+.++++..|.....+ +..+++...+.+
T Consensus 68 ~a~~~---~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 68 ASFRR---GVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred HHHHC---CCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 65321 25899999999988776 677777665443
No 310
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=49.78 E-value=90 Score=28.27 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=60.6
Q ss_pred cceEEEEEcCCCCCcccccccCCccccee-eCCcceee---hhehhhhhccCCcEEEEEcccChh---HHHHHHHhhccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVP-IGGAYRLI---DVPMSNCINSGINKVYILTQYNSA---SLNRHLARAYNY 79 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llp-v~g~~pli---~~~l~~l~~~gi~~I~vv~~~~~~---~i~~~l~~~~~~ 79 (415)
.+..+|+.+...|+-..- ....-+.+.. -.|. |.. .=+++.|+..|+++|.+++.|..+ .+.+|+.+.
T Consensus 70 a~~dvi~~~cTsgs~~~G-~~~~~~~i~~~~~g~-p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~--- 144 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIG-DDEVTRAINAAKPGT-PVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR--- 144 (239)
T ss_pred CCCCEEEEccchhheecC-HHHHHHHHHhcCCCC-CeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC---
Confidence 356677777766654321 0011111111 1123 222 344677888899999999998863 455555431
Q ss_pred CCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHH
Q 014953 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN 151 (415)
Q Consensus 80 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~ 151 (415)
| ++++.........+.....=+.+++..+...+.. ..-+-+++.|-.+-..++-+-++.
T Consensus 145 --G-------~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~----~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 145 --G-------FEIVNFTCLGLTDDREMARISPDCIVEAALAAFD----PDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --C-------cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC----CCCCEEEEeCCCchhHHHHHHHHH
Confidence 2 2222110000000111112234455444433322 145777788877766665444443
No 311
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=47.62 E-value=1.1e+02 Score=33.34 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=59.3
Q ss_pred ceeeCCcce--eehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcc
Q 014953 33 AVPIGGAYR--LIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (415)
Q Consensus 33 llpv~g~~p--li~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (415)
++|.-|. + ++..++..+.+..- -+|+|+-....+...+...+ . + +.++.....
T Consensus 265 iIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~--------~---v~yI~R~~n-------- 323 (852)
T PRK11498 265 FVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V--------G---VKYIARPTH-------- 323 (852)
T ss_pred EEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C--------C---cEEEEeCCC--------
Confidence 5666776 4 45556666544221 15777655445555544432 1 1 223221111
Q ss_pred ccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
..|-++++..++...+ .+.++++.+|.+...+ +..++..+.+.. .+.++.
T Consensus 324 ~~gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQ 374 (852)
T PRK11498 324 EHAKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQ 374 (852)
T ss_pred CcchHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEE
Confidence 1367888888877654 5899999999998877 566776655443 334443
No 312
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=47.36 E-value=19 Score=28.84 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.4
Q ss_pred CcceeehhehhhhhccCCcEEEEE
Q 014953 38 GAYRLIDVPMSNCINSGINKVYIL 61 (415)
Q Consensus 38 g~~pli~~~l~~l~~~gi~~I~vv 61 (415)
+. |-+...++.|.+.|.++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 45 888999999998999988775
No 313
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.94 E-value=1e+02 Score=30.28 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=70.0
Q ss_pred cceeeCCcce-eehhehhhhhccCCc--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcccc
Q 014953 32 PAVPIGGAYR-LIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (415)
Q Consensus 32 ~llpv~g~~p-li~~~l~~l~~~gi~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (415)
-++|.-|..+ .+..+++++.+.... +|+++.....+...+.+.+... ++. ..+.+...... ..
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~~--------~~ 123 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-----EYG-PNFRVIYPEKK--------NG 123 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-----hcC-cceEEEecccc--------Cc
Confidence 3566677667 899999999887643 7888877666666666654421 111 01222211011 14
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCC
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~ 157 (415)
|-+.++..+....+ .+-++++.+|.....| +.+++..+...+.
T Consensus 124 gK~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 124 GKAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred cchHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 77899988877654 5889999999998888 7888887765544
No 314
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=44.45 E-value=1.1e+02 Score=29.19 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.0
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHH---cCCcEEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ---SGADITISC 163 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~---~~~~~ti~~ 163 (415)
.|.+.|+..++.... .+.++++.+|...+.+ +..+++...+ .+.++++..
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 489999998876543 4889999999977765 6666665543 455555544
No 315
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=42.66 E-value=2.2e+02 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.8
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~t 160 (415)
.|.+.|+..+....+ .+.++++.+|.-.+.+ +.++++... ++.+++
T Consensus 76 ~G~~~A~~~G~~~A~------gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT------GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC------CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 488899998877654 5889999999977665 788888764 456644
No 316
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=42.05 E-value=1.4e+02 Score=28.14 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=35.6
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccC-hHHHHHHHH-HcCCcEEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHR-QSGADITISC 163 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~-l~~~l~~h~-~~~~~~ti~~ 163 (415)
.|.+.++..+....+ .+.++++.+|.. .+.+ +..+++... ..+.+++...
T Consensus 101 ~Gkg~A~~~g~~~a~------gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATT------GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 488889888776543 588999999996 6665 688888765 3455555544
No 317
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=40.50 E-value=2.4e+02 Score=24.43 Aligned_cols=44 Identities=14% Similarity=-0.081 Sum_probs=31.1
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCC
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~ 157 (415)
.|.+.+...+..... .+.++++.+|.+...+ +..++....+.+.
T Consensus 70 ~G~~~a~N~g~~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 70 KGVGYAKNQAIAQSS------GRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 477777776665443 5899999999987766 6777776655443
No 318
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=38.82 E-value=2.1e+02 Score=24.33 Aligned_cols=106 Identities=9% Similarity=0.004 Sum_probs=56.4
Q ss_pred ceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
++|.-|....|..+|+.+.+.. --+|+|+-....+...+.+. .. ... ..+.++...... ...|-+
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~-~~~------~~v~~i~~~~~~------~~~Gk~ 67 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LA-ITD------SRVHLLRRHLPN------ARTGKG 67 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-he-ecC------CcEEEEeccCCc------CCCCHH
Confidence 3555554357777888887653 22666665544444444443 10 000 113343221100 014888
Q ss_pred HHHHHhhhhhcCCC---C--CCcCeEEEEcCCeecccC-hHHHHHHH
Q 014953 112 DAVRQFHWLFEDPR---N--KVIEDVLILSGDHLYRMD-YMDFVQNH 152 (415)
Q Consensus 112 ~al~~~~~~i~~~~---~--~~~~~~lv~~gD~i~~~~-l~~~l~~h 152 (415)
.++..++..+.... + ...+.++++.+|.....+ +..+.+..
T Consensus 68 ~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 68 DALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 89988877653100 0 002578999999988887 56655443
No 319
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=37.37 E-value=1.1e+02 Score=23.19 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=7.2
Q ss_pred eEeCCCCEEee
Q 014953 380 VGIGENTKIKY 390 (415)
Q Consensus 380 ~~Ig~~~~i~~ 390 (415)
..|.+++.+.+
T Consensus 87 l~v~~ga~i~G 97 (101)
T PF04519_consen 87 LEVEGGASING 97 (101)
T ss_pred EEEeCCCEEEE
Confidence 56777777663
No 320
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=37.15 E-value=1.9e+02 Score=25.29 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=26.3
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHH
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQN 151 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~ 151 (415)
.+.++..+....+ .+.++++.+|.+...+ |..+...
T Consensus 75 k~~a~n~g~~~a~------~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 75 KAGALAEGMKVAK------GEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred chHHHHHHHHhCC------CCEEEEEcCCCCCChHHHHHhhhh
Confidence 4677777766553 5899999999988887 5664443
No 321
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=34.54 E-value=31 Score=32.98 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=37.0
Q ss_pred ccccceEEEEEcCCCCCccccccc----------CCcc-----cceeeCCcceeehhehhhhhccCCcEEEEEc
Q 014953 4 RDARTVAAVILGGGAGTRLYPLTK----------QRAK-----PAVPIGGAYRLIDVPMSNCINSGINKVYILT 62 (415)
Q Consensus 4 ~~~~~~~aVILAaG~g~Rl~plt~----------~~pK-----~llpv~g~~pli~~~l~~l~~~gi~~I~vv~ 62 (415)
+++++|.++||.| .|||..--.. .++. +++.+ .. |-|...++.|.+.|.++|+|+-
T Consensus 1 ~~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~e-Psl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 1 MDRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AE-PNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CC-CCHHHHHHHHHHCCCCEEEEec
Confidence 4677788988887 8888531100 1221 23333 34 7889999999999999987763
No 322
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=33.72 E-value=2.2e+02 Score=26.57 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=58.4
Q ss_pred eCCcceeehhehhhhhccCCcEEEE--EcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHH
Q 014953 36 IGGAYRLIDVPMSNCINSGINKVYI--LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADA 113 (415)
Q Consensus 36 v~g~~pli~~~l~~l~~~gi~~I~v--v~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~a 113 (415)
.+.. ..+...++.+.++......+ |-+...+...+.+.... + ..+.++....+ .|-+++
T Consensus 12 yn~~-~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~--------~~v~~i~~~~N---------lG~agg 72 (305)
T COG1216 12 YNRG-EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-F--------PNVRLIENGEN---------LGFAGG 72 (305)
T ss_pred cCCH-HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-C--------CcEEEEEcCCC---------ccchhh
Confidence 3444 55666677777665433322 34333344444444321 0 11445443333 466666
Q ss_pred HHHhhhhhcCCCCCCcC-eEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 114 VRQFHWLFEDPRNKVIE-DVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 114 l~~~~~~i~~~~~~~~~-~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
...+....... .+ .+++++-|++.+.+ +.++++.+.+.+..+.+..
T Consensus 73 ~n~g~~~a~~~----~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~ 120 (305)
T COG1216 73 FNRGIKYALAK----GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGP 120 (305)
T ss_pred hhHHHHHHhcC----CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeee
Confidence 65554443221 23 69999999988877 7999998888766544433
No 323
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=31.00 E-value=2.6e+02 Score=29.90 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=31.3
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
+-++++..++...+ .+.++++.+|.+...| +.+++..+.+.
T Consensus 215 ~KAgnLN~al~~a~------gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 215 AKAGNINNALKHTD------GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CChHHHHHHHHhcC------CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 56778888876654 5899999999988888 67777766443
No 324
>PRK10063 putative glycosyl transferase; Provisional
Probab=30.50 E-value=4.1e+02 Score=23.95 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.0
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~ 155 (415)
.|.++|+..++.... .+.++++++|-+...+..+++......
T Consensus 68 ~G~~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 68 NGIYDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 488999988887654 488999998887766754555554433
No 325
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=26.75 E-value=1.2e+02 Score=29.79 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=37.5
Q ss_pred EeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 335 IEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 335 i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+++=.|.-+|..|.++.+++.+|.-.. +|. +-.|-+|++++|++|-.+..|-+
T Consensus 445 LdhLtVsGdV~FGknV~LkGtViIia~-------------~~~-~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 445 LDHLTVSGDVWFGKNVSLKGTVIIIAN-------------EGD-RIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred eceEEEeccEEeccceEEeeEEEEEec-------------CCC-eeecCCCCeeecceEeccccccc
Confidence 345566668999999999997664331 111 14588999999999988877654
No 326
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=26.19 E-value=57 Score=31.35 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=44.0
Q ss_pred CcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccCh--hHHHHHHH
Q 014953 20 TRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNS--ASLNRHLA 74 (415)
Q Consensus 20 ~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~--~~i~~~l~ 74 (415)
..+.||....+--++.|=+++..+.++|+.|++ .||++..++.++.. +++.+.+.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 456677777888888899997789999999988 49999999988765 66766653
No 327
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=24.93 E-value=65 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=16.3
Q ss_pred eeehhehhhhhccCCcEEEEEc
Q 014953 41 RLIDVPMSNCINSGINKVYILT 62 (415)
Q Consensus 41 pli~~~l~~l~~~gi~~I~vv~ 62 (415)
|-+.-.++.|.+.|+++|+++-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 7777777888777887776653
No 328
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=23.88 E-value=4e+02 Score=22.07 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=9.0
Q ss_pred eEeCCCCEEe-eeEEC
Q 014953 380 VGIGENTKIK-YEQLK 394 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~ 394 (415)
..|.+|+++. .|...
T Consensus 108 i~v~~Ga~f~G~~~~~ 123 (146)
T COG1664 108 ITVEEGAIFEGDCEML 123 (146)
T ss_pred EEEccCCEEEeEEEec
Confidence 5667777776 44443
No 329
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=23.50 E-value=1.6e+02 Score=28.74 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=43.1
Q ss_pred hhhhhccC-CcEEEEEcccCh--hHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcC
Q 014953 47 MSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123 (415)
Q Consensus 47 l~~l~~~g-i~~I~vv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~ 123 (415)
+..+.+.+ ++.++++|+.+. +....++. .+.+. ...-...+-...+. -..-|+..+......+.+
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~d~em~~~~le-~~~i~----~pdy~L~i~~~~~t-------l~~~t~~~i~~~~~vl~~ 90 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHRDYEMLDQVLE-LFGIR----KPDYDLNIMKPGQT-------LGEITGNIIEGLSKVLEE 90 (383)
T ss_pred HHHHHhCCCCceEEEEecccccHHHHHHHHH-HhCCC----CCCcchhccccCCC-------HHHHHHHHHHHHHHHHHh
Confidence 44555554 899999999887 45544443 33222 01111222211221 112455555555555654
Q ss_pred CCCCCcCeEEEEcCCeecc
Q 014953 124 PRNKVIEDVLILSGDHLYR 142 (415)
Q Consensus 124 ~~~~~~~~~lv~~gD~i~~ 142 (415)
. ..|.+++.||+-+.
T Consensus 91 ~----kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 E----KPDLVLVHGDTNTT 105 (383)
T ss_pred h----CCCEEEEeCCcchH
Confidence 3 47899999997544
No 330
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=22.21 E-value=6.1e+02 Score=23.22 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=29.2
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHH
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQ 150 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~ 150 (415)
.|.+.+.-.+....+ .+-++++.+|++...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~------~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYAR------GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcC------CCEEEEEcCCeeeCHHHHHHHHH
Confidence 477888877776654 5899999999999887 677777
No 331
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=21.56 E-value=15 Score=33.96 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=43.2
Q ss_pred CeEEEEcCCeecccChHHHHHHHHHcCCcEEEEE------EEcCCCcCCcccEEEECCCCCeEEEEEcCCcc
Q 014953 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISC------LPMDDSRASDFGLMKINNEGRVLSFSEKPKGK 195 (415)
Q Consensus 130 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~------~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~ 195 (415)
.....-+||++...+.+.+++.|++++.....+. ..+.+ +.-+|++..++.+.+..+.+|+...
T Consensus 108 ~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~D--P~~lG~~~~~~~~~~~kvv~K~~~d 177 (266)
T cd04180 108 HLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVAD--PLFIGIAIQNRKAINQKVVPKTRNE 177 (266)
T ss_pred eeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccC--HHHHHHHHHcCCCEEEEEEECCCCC
Confidence 3456667777777777789999999987633332 22222 4556776666667888899988753
No 332
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=20.14 E-value=41 Score=29.97 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=48.3
Q ss_pred eEEEEEcCCCC---Ccccccc-cCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 9 VAAVILGGGAG---TRLYPLT-KQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 9 ~~aVILAaG~g---~Rl~plt-~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
|++||+--..+ |||.|.- ...-..| -+ -|+..++..+.. ++ ++||+... .+.+.-. ..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L----a~-aMl~Dvl~al~~--v~-v~vVs~d~--~v~~~a~--------~~ 62 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL----AL-AMLRDVLAALRA--VD-VVVVSRDP--EVAALAR--------AR 62 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH----HH-HHHHHHHHHHHH---S-EEEEES----S-TTTTT----------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH----HH-HHHHHHHHHHHh--cC-eEEeccch--hhhhhhh--------hc
Confidence 67778775544 7776531 1000011 12 588899998877 66 77776422 2211100 01
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHH
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 152 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h 152 (415)
++ ++++.... .|.-.||..+..... .+.++++++|+ +...++..+++..
T Consensus 63 ~g---~~vl~d~~----------~gLN~Al~~a~~~~~------~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 63 LG---AEVLPDPG----------RGLNAALNAALAAAG------DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp -S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred cC---CeEecCCC----------CCHHHHHHHHHhccC------CCceEEeecCCccCCHHHHHHHHhcc
Confidence 22 34543331 377788888732222 58999999999 4556688887654
Done!