BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014954
         (415 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
 pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
 pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
 pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
          Length = 438

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 365 WKASRPMNNGEGWETMRRELSVLYSRFC-----KCCCIVDKLVFEMKYYL 409
           WKA+  M NG G    RREL++    FC     K C  V   V    Y L
Sbjct: 332 WKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDL 381


>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
           Of The H1 Subunit Of The Asialoglycoprotein Receptor
          Length = 128

 Score = 28.5 bits (62), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 53  SWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFR 100
           SW +E  FV   ++ +GP + W       G WK++D T+  + F+++R
Sbjct: 41  SW-EEQKFV---QHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWR 84


>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
          Length = 304

 Score = 28.1 bits (61), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 150 YIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQE-------SPREKI-W 201
           Y  PF QLR+   + K    ++ +D  L    H LG     V++E       SP+ +  W
Sbjct: 196 YRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDW 255

Query: 202 RRKNSPIYEMEKHCNIEIA 220
             K+    E+++ CN  I 
Sbjct: 256 FIKSRTALELQRRCNTLIT 274


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,911,782
Number of Sequences: 62578
Number of extensions: 413736
Number of successful extensions: 675
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 5
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)