BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014954
         (415 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
          Length = 695

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 234 DHDRYHIEGL--MESPAVDDDGDCFSP------LLLNATSVNIEVYYNKAVNYTLMVTFV 285
           +++ YH +G+   + P V   G  +SP         N       V  N  V ++ +  F+
Sbjct: 272 ENEFYHPQGVSTQKMPEVFVSGLVYSPDCNVAFTFSNTKGPRNFVLENHLVRFSSLYIFI 331

Query: 286 SFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATA 345
              Q+ +L+RQM   N+ S   ++S L I  QA +DAY+ +  L+   ++E  +  F + 
Sbjct: 332 VLSQIFVLLRQMR-INSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSV 390

Query: 346 AFFKFVVFSIFEMRYLLAIWKA 367
           AF   V   +F MRYL  I + 
Sbjct: 391 AFLSLVPSVMFTMRYLALILRV 412


>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
           SV=1
          Length = 758

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%)

Query: 289 QVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFF 348
           Q+ LL+ QM H+NT S   K+S        ++D  L  L+  A  +V  L+     +AF 
Sbjct: 410 QIYLLLTQMHHTNTPSMVNKISFYCFSMINLVDGSLATLYFVAASVVPELYLPLVISAFS 469

Query: 349 KFVVFSIFEMRYLLAIWKA 367
            F++ SIFE+RYL++I+ +
Sbjct: 470 CFILASIFEIRYLISIYAS 488


>sp|A8LVF4|KMO_SALAI Kynurenine 3-monooxygenase OS=Salinispora arenicola (strain
           CNS-205) GN=kmo PE=3 SV=1
          Length = 454

 Score = 32.3 bits (72), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 140 GGAQIRVEGVYIWPFRQLRMVAHSGKQGELS 170
           G  ++R+E +++WP  +  MVAH  + G L+
Sbjct: 205 GQPRVRLEALHVWPGHEALMVAHPNRDGSLT 235


>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5
            PE=1 SV=1
          Length = 1052

 Score = 32.3 bits (72), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 148  GVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQE-------SPREKI 200
            G Y  PF QLR+   + K    ++E+D  L    H LG     V+ E       SP+ + 
Sbjct: 926  GRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRF 985

Query: 201  -WRRKNSPIYEMEKHCNIEIA 220
             W  K+    E+++ CN  I 
Sbjct: 986  DWFLKSRTAMELQRRCNTLIT 1006


>sp|A4XD40|KMO_SALTO Kynurenine 3-monooxygenase OS=Salinispora tropica (strain ATCC
           BAA-916 / DSM 44818 / CNB-440) GN=kmo PE=3 SV=1
          Length = 453

 Score = 32.3 bits (72), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 140 GGAQIRVEGVYIWPFRQLRMVAHSGKQGELS 170
           G  ++R+E +++WP  +  M+AH  + G L+
Sbjct: 205 GQPRVRLEALHVWPGHEAMMIAHPNRDGSLT 235


>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5
            PE=1 SV=1
          Length = 1051

 Score = 32.0 bits (71), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 148  GVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQE-------SPREKI 200
            G Y  PF QLR+   + K    ++E+D  L    H LG     V+ E       SP+ + 
Sbjct: 925  GRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRF 984

Query: 201  -WRRKNSPIYEMEKHCNIEIA 220
             W  K+    E+++ CN  I 
Sbjct: 985  DWFLKSRTAMELQRRCNTLIT 1005


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,992,815
Number of Sequences: 539616
Number of extensions: 6111186
Number of successful extensions: 15064
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15060
Number of HSP's gapped (non-prelim): 9
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)