Query 014954
Match_columns 415
No_of_seqs 125 out of 137
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 01:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0828 Predicted E3 ubiquitin 100.0 8.6E-53 1.9E-57 429.9 13.6 346 29-396 55-425 (636)
2 COG5540 RING-finger-containing 96.6 8.3E-05 1.8E-09 74.9 -5.5 137 214-373 1-146 (374)
3 PF11145 DUF2921: Protein of u 90.9 13 0.00028 43.3 17.8 208 120-374 516-741 (909)
4 PF11970 Git3_C: G protein-cou 24.4 2.4E+02 0.0053 23.1 5.8 59 268-326 7-68 (76)
5 TIGR00799 mtp Golgi 4-transmem 20.4 9.1E+02 0.02 24.5 10.2 75 282-364 67-154 (258)
6 KOG1419 Voltage-gated K+ chann 19.6 1.4E+02 0.003 33.6 4.3 50 323-372 105-154 (654)
7 PF05297 Herpes_LMP1: Herpesvi 18.1 41 0.00088 34.8 0.0 25 373-402 133-157 (381)
8 PF01333 Apocytochr_F_C: Apocy 17.6 1.9E+02 0.004 26.2 4.0 23 273-295 82-104 (118)
9 PF02042 RWP-RK: RWP-RK domain 15.0 30 0.00065 26.8 -1.4 14 145-158 37-50 (52)
10 KOG2881 Predicted membrane pro 14.2 8.7E+02 0.019 25.1 8.1 26 347-372 134-159 (294)
No 1
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-53 Score=429.88 Aligned_cols=346 Identities=47% Similarity=0.641 Sum_probs=295.7
Q ss_pred HHHhhhhcccccccccchhhhh---hcccCccceeeccCCCccCCccccceeEEEEeEEE-----EeCC-CCcccccccc
Q 014954 29 LWFGFLVLKPVEGLRPLRERAR---ARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWK-----FLDS-TNSSSRFRDF 99 (415)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~N~tG~~~G~W~-----~~~~-~n~s~~~p~~ 99 (415)
...|++-+++.+|.++||+... +..|++||+|++...|-.++.+.+||+++..|+|+ +.|+ .|++..++|+
T Consensus 55 t~~g~i~l~~~ng~~~lr~t~~~~~~~~~~~ew~s~k~~~nv~~~~s~~nI~~s~~g~~k~n~~~fln~~ln~~s~f~d~ 134 (636)
T KOG0828|consen 55 TSDGLIELPVGNGDSHLRHTSVMTGNWNILPEWLSGKVSPNVTWHTSLRNIVMSQSGTWKANLYEFLNGNLNSSSKFLDF 134 (636)
T ss_pred hcceeEEeecCCCchhhccceeecCCceeccccccccccCCccccccceeEEeeeccchhhhHHHHhccccccchhhhhh
Confidence 4578889999999999999852 45899999999999999999999999999999999 7776 9999999999
Q ss_pred ccccceEEEEEecCCCccCCeeEEEEEEEEEeeecCCCCccceeEEEeeeeecCCCceEEEEeccCcCCCCCCCcccccC
Q 014954 100 RKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSN 179 (415)
Q Consensus 100 t~~~G~~~~~L~~~~t~~~~v~~v~g~~~i~D~~~s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~eg~l~~~~d~f~sn 179 (415)
.+.+|+.+.++.-.|++++||++|+|+..+||.++..+.+++. +.-+|.. +.|++-+.+
T Consensus 135 ~~~n~~SVy~~~~~~~ki~~I~~v~gst~fh~~Fd~~h~~~~~-------------------~~yk~~~--~~D~~el~~ 193 (636)
T KOG0828|consen 135 EKENGNSVYELVFHPTKITGIHYVQGSTDFHPNFDVIHWLLKD-------------------SPYKDAP--PLDGTELFP 193 (636)
T ss_pred HhhcCCceEEEEeccccccceEEEeeccccccccccchhhccc-------------------ccccccC--Cccchhccc
Confidence 9999999999999999999999999999999988655442221 1122222 334444444
Q ss_pred ccc----ccccccccccccchhHHHHHhhcCCCccCCCCcceEEeeeEecCCCCCCC---CCCCceEEEEEEEcCCCCCC
Q 014954 180 PYH----LLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHE---GDHDRYHIEGLMESPAVDDD 252 (415)
Q Consensus 180 ~~~----l~~~~ssq~l~~~~~~~~l~~k~~~~~~~~~~Cef~i~~Ql~Pl~~~~~e---~E~~~l~msGvl~SP~~~~~ 252 (415)
+++ -+|+||+|.+|+.+++++++.|+....+||+||+....+|++.+++.+++ .+....|+.+++++|+++++
T Consensus 194 ~~~n~~~~~~i~s~qd~Qes~~~~~fk~e~~~~~eme~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~ys 273 (636)
T KOG0828|consen 194 LLQNRSLELGIFSSQDFQESPRDRVFKEEESPCSEMEKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYS 273 (636)
T ss_pred hhhcccchhcchhhhhhhhCccchhhhcccchHHHHHHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccC
Confidence 444 38999999999999999999999999999999999999999999877763 34445566666666666666
Q ss_pred CCCCceEEEeEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014954 253 GDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAG 332 (415)
Q Consensus 253 ~DCG~~Lel~l~G~k~Ev~~~kir~yll~~alv~liQI~LLirQMk~S~TPStlSRVSf~TIamqaI~Dg~l~l~~L~~a 332 (415)
+||++.|.+|.+....|++.+++++|.+++.+.++.|+++|++||.+ +|||.++|+||+||+||+++|+++|+.+++.+
T Consensus 274 pDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~-~sps~v~rlSf~~i~mqa~mD~~Lall~lta~ 352 (636)
T KOG0828|consen 274 PDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRI-NSPSHVQRLSFLTIAMQAGMDAYLALLFLTAN 352 (636)
T ss_pred CCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 69999999987766699999999999999999999999999999988 57999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc---------CCCCCCccHHHHHHHHHHHHHHHhhHHH
Q 014954 333 ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAS---------RPMNNGEGWETMRRELSVLYSRFCKCCC 396 (415)
Q Consensus 333 l~~e~lfL~f~~~AFl~FIl~sifEmRYLi~IwksQ---------~pE~~~e~we~lRR~ls~ly~rFY~~Li 396 (415)
.+.+++|+||+++||++|+.+++||||||+.|||+| +|..++.+|+.+|++++-.+-+++|+|+
T Consensus 353 ~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s~~g~l~ 425 (636)
T KOG0828|consen 353 AVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENSPWGILL 425 (636)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCCcchhhH
Confidence 999999999999999999999999999999999976 4556677899999998754444444433
No 2
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=8.3e-05 Score=74.87 Aligned_cols=137 Identities=15% Similarity=-0.086 Sum_probs=104.2
Q ss_pred CcceEEeeeEecCCCCCCCCCC--------CceEEE-EEEEcCCCCCCCCCCceEEEeEEeehhHHHHHHHHHHHHHHHH
Q 014954 214 HCNIEIAAQISRVSSTQHEGDH--------DRYHIE-GLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTF 284 (415)
Q Consensus 214 ~Cef~i~~Ql~Pl~~~~~e~E~--------~~l~ms-Gvl~SP~~~~~~DCG~~Lel~l~G~k~Ev~~~kir~yll~~al 284 (415)
.|+|.|..|+.|.-+--..+|. +.+-|- --..|| ||+..+-.| -.+++...+.+..++...+.
T Consensus 1 msyYqIivcilasisYiillevialdLGvldNif~ppr~a~st------d~a~rlg~~--Nv~lw~~~~s~~khl~~~ia 72 (374)
T COG5540 1 MSYYQIIVCILASISYIILLEVIALDLGVLDNIFMPPRKAQST------DMARRLGNN--NVLLWNIMRSMLKHLDTRIA 72 (374)
T ss_pred CceEEEEEEEecccchhhhhhhhccccCCccccccCccccCCc------hHHHhcCCc--chhHHHHHHHHHHHHhhhhh
Confidence 4999999999887543332222 112111 013467 999997653 23377777888899999999
Q ss_pred HHHHHHHHHHHHhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014954 285 VSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAI 364 (415)
Q Consensus 285 v~liQI~LLirQMk~S~TPStlSRVSf~TIamqaI~Dg~l~l~~L~~al~~e~lfL~f~~~AFl~FIl~sifEmRYLi~I 364 (415)
.+.+|+|| |||++.+.+++|. +++| +...++..+-... .|.+..+.++-.|+..+.++.|+.+.+
T Consensus 73 ~~~i~~yl---------tPs~v~~~~~~c~---NlvD--l~s~yf~~~d~~~-~yd~~~i~~~s~~~~~s~~~vR~~~~~ 137 (374)
T COG5540 73 SSDIDAYL---------TPSGVFMNRLRCR---NLVD--LISGYFGDGDDGR-EYDETRIPPPSRDLRGSGRKVRGSARQ 137 (374)
T ss_pred hhhhhhee---------CccceehhhhcCc---chhh--hhheeeecccccc-cccccccCCccchhhcccceeeeeecc
Confidence 99999998 9999999999999 7789 4445555555544 788999999999999999999999999
Q ss_pred HHhcCCCCC
Q 014954 365 WKASRPMNN 373 (415)
Q Consensus 365 wksQ~pE~~ 373 (415)
...|-.|++
T Consensus 138 ~~~sv~E~n 146 (374)
T COG5540 138 EVPSVEERN 146 (374)
T ss_pred cCCchhhhH
Confidence 999887753
No 3
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=90.86 E-value=13 Score=43.30 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=116.3
Q ss_pred eeEEEEEEEEEeeecCCCCccceeEEEeeeeecCCCceEEEEeccCcCCCCCCCcccccCcccccccccccccccchhHH
Q 014954 120 VHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREK 199 (415)
Q Consensus 120 v~~v~g~~~i~D~~~s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~eg~l~~~~d~f~sn~~~l~~~~ssq~l~~~~~~~ 199 (415)
.-+|...+++ .......-.+|-+|||| =| .-|+|-|--=.+ ...| .+.+.+
T Consensus 516 llNVSy~i~~----~~~~~~~~~~isaEGvY-D~-~~G~lclVGCR~---------v~~~---------~~~~~~----- 566 (909)
T PF11145_consen 516 LLNVSYEISL----SGSISSNSSQISAEGVY-DP-KTGRLCLVGCRD---------VRLN---------WNISSN----- 566 (909)
T ss_pred eeEEEEEEEE----cccccceEEEEEEEeee-eC-CCCeEEEEeccc---------cccC---------cccccc-----
Confidence 5678888887 12222234899999999 66 566666632222 0111 111111
Q ss_pred HHHhhcCCCccCCCCcceEEeeeEecCCCCCCCCCCCceEEEEEEEcCCCCCCCCCCceEEEeEEeehhH----HHHHHH
Q 014954 200 IWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIE----VYYNKA 275 (415)
Q Consensus 200 ~l~~k~~~~~~~~~~Cef~i~~Ql~Pl~~~~~e~E~~~l~msGvl~SP~~~~~~DCG~~Lel~l~G~k~E----v~~~ki 275 (415)
+-+..|++.+-.|..|++.. ..-+..|.|.|---.+|+=+.=.+++...++-++ ....+.
T Consensus 567 ----------~~~~DC~I~V~vq~pp~~~~------~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~~~q~~~~i~R~ 630 (909)
T PF11145_consen 567 ----------ESSMDCEILVTVQFPPLDAK------VNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYYRKQAEESIWRM 630 (909)
T ss_pred ----------CCCCCeeEEEEEEcCCCCCC------CCCcEEEEEEeccCCCCCccccceeeeeccceeccccchhhhhh
Confidence 34689999999999998643 2234567777753334445665666654444332 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH--HHH
Q 014954 276 VNYTLMVTFVSFLQVLLLIRQMEHSN-TQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVE-----------SL--FNA 341 (415)
Q Consensus 276 r~yll~~alv~liQI~LLirQMk~S~-TPStlSRVSf~TIamqaI~Dg~l~l~~L~~al~~e-----------~l--fL~ 341 (415)
---.++.++..-+-+.+..-|+-+.+ .|..+--||+-+++.|++.=+.--+. =+-|++.. .- -..
T Consensus 631 d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~-n~EaLf~~~~~~~~~~~~~~~w~e~~ 709 (909)
T PF11145_consen 631 DLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVL-NFEALFKSSHNRQNIFLDSGGWLEVN 709 (909)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhc-CHHHHcCcCCCCceEEeecCchhHHH
Confidence 33445555555555556666766644 67778889999999997743321111 11112210 00 011
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC
Q 014954 342 FATAAFFKFVVFSIFEMRYLLAIWKASRPMNNG 374 (415)
Q Consensus 342 f~~~AFl~FIl~sifEmRYLi~IwksQ~pE~~~ 374 (415)
=.++=++..+.| ++..|.+-.+|++|......
T Consensus 710 e~~vr~ltmvAf-lL~lRL~qlvw~aR~~~~~~ 741 (909)
T PF11145_consen 710 EVMVRLLTMVAF-LLQLRLLQLVWSARIRDGAR 741 (909)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhcccccc
Confidence 123333344444 56889999999999876443
No 4
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=24.38 E-value=2.4e+02 Score=23.13 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCc-chhhhHHHHHHHHHHHHHHHHH
Q 014954 268 IEVYYNKAVNYTLMVTFVSFLQVLLLIRQME--HSNTQS-GAAKVSILMIGQQAIMDAYLCL 326 (415)
Q Consensus 268 ~Ev~~~kir~yll~~alv~liQI~LLirQMk--~S~TPS-tlSRVSf~TIamqaI~Dg~l~l 326 (415)
.+.+.+.+-.|=+.++++-+.=+..=.-|.. ....|+ .++=+|-.++..|-.+|+.+++
T Consensus 7 i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~ 68 (76)
T PF11970_consen 7 IRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFT 68 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhhee
Confidence 3445555556666666666644444444544 345666 8888999999999999998764
No 5
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=20.40 E-value=9.1e+02 Score=24.50 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Q 014954 282 VTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVES-------------LFNAFATAAFF 348 (415)
Q Consensus 282 ~alv~liQI~LLirQMk~S~TPStlSRVSf~TIamqaI~Dg~l~l~~L~~al~~e~-------------lfL~f~~~AFl 348 (415)
.++++++-+-|+.--++.-..+ -.-+ ++.| ++|-..|+.++. ++..+. ..+||.+.=++
T Consensus 67 ~~~l~~~slsll~gvI~~r~~~----l~pf--l~~Q-i~D~~~cll~~~-g~yie~pa~l~~~~~~~~~~liPFfclQif 138 (258)
T TIGR00799 67 INALFIISVSLLMGVVKNREKY----LYPF--LSLQ-IMDFLLCLLTLL-GSYIELPAYLKLARPRPGPSKIPLMTLQLL 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCcce----eeHH--HHHH-HHHHHHHHHHHh-hhhhcchhhhhhccccCccccchHHHHHHH
Confidence 3444455555565555542222 0112 2333 669999988874 444443 45688888888
Q ss_pred HHHHHHHHhHHHHHHH
Q 014954 349 KFVVFSIFEMRYLLAI 364 (415)
Q Consensus 349 ~FIl~sifEmRYLi~I 364 (415)
-|.+....-...++.+
T Consensus 139 DF~Ls~Lta~ss~~yl 154 (258)
T TIGR00799 139 DFCLSILTLCSSYMEV 154 (258)
T ss_pred HHHHHHHHHhhhheec
Confidence 8877766665555443
No 6
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=19.58 E-value=1.4e+02 Score=33.57 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Q 014954 323 YLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMN 372 (415)
Q Consensus 323 ~l~l~~L~~al~~e~lfL~f~~~AFl~FIl~sifEmRYLi~IwksQ~pE~ 372 (415)
+.|++...++.+-+..-++--+.-++-+++..+|+.-|++.||.+..--+
T Consensus 105 l~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r 154 (654)
T KOG1419|consen 105 LSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR 154 (654)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44666666666656555777788888999988999999999999986544
No 7
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=18.13 E-value=41 Score=34.84 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014954 373 NGEGWETMRRELSVLYSRFCKCCCIVDKLV 402 (415)
Q Consensus 373 ~~e~we~lRR~ls~ly~rFY~~Lil~~~~~ 402 (415)
++++|.++ .|+.-|+..++++.+.|
T Consensus 133 GAs~WtiL-----aFcLAF~LaivlLIIAv 157 (381)
T PF05297_consen 133 GASFWTIL-----AFCLAFLLAIVLLIIAV 157 (381)
T ss_dssp ------------------------------
T ss_pred hhHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 45678764 35666666666665533
No 8
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=17.62 E-value=1.9e+02 Score=26.16 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014954 273 NKAVNYTLMVTFVSFLQVLLLIR 295 (415)
Q Consensus 273 ~kir~yll~~alv~liQI~LLir 295 (415)
.++.-++.+++.+.++||+|.+|
T Consensus 82 ~Ri~gll~F~~~v~laQi~LVLK 104 (118)
T PF01333_consen 82 NRIQGLLAFFAAVMLAQIFLVLK 104 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHhHHHHHHHHHHHHheeeee
Confidence 57788899999999999998864
No 9
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=14.96 E-value=30 Score=26.79 Aligned_cols=14 Identities=43% Similarity=1.044 Sum_probs=10.9
Q ss_pred EEeeeeecCCCceE
Q 014954 145 RVEGVYIWPFRQLR 158 (415)
Q Consensus 145 rl~GV~~Wp~rq~~ 158 (415)
|-+||.=||+|++.
T Consensus 37 R~~GI~RWP~Rkl~ 50 (52)
T PF02042_consen 37 RRLGIPRWPYRKLK 50 (52)
T ss_pred HHcCCCCCCchhhc
Confidence 55788789999864
No 10
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=14.19 E-value=8.7e+02 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCC
Q 014954 347 FFKFVVFSIFEMRYLLAIWKASRPMN 372 (415)
Q Consensus 347 Fl~FIl~sifEmRYLi~IwksQ~pE~ 372 (415)
+++-++|.+||.|.+.+=|+....+.
T Consensus 134 ~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 134 YLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 56677788999999999999876654
Done!