Query 014954
Match_columns 415
No_of_seqs 125 out of 137
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b35_D CRPV, protein (cricket 14.7 44 0.0015 25.0 0.5 12 294-305 5-16 (57)
2 4ggd_C Mitotic checkpoint seri 13.5 24 0.00083 22.6 -1.0 19 142-162 3-21 (26)
3 2lfe_A E3 ubiquitin-protein li 10.0 1.8E+02 0.0062 25.5 3.0 77 44-129 57-135 (138)
4 1q90_A Apocytochrome F; membra 9.3 2.5E+02 0.0087 27.4 4.0 23 273-295 250-272 (292)
5 1vf5_C Cytochrome F; photosynt 9.2 2.6E+02 0.0088 27.3 4.0 23 273-295 253-275 (289)
6 1l4z_B Streptokinase; plasmino 7.4 97 0.0033 27.0 0.2 28 55-84 4-31 (136)
7 3rm2_L Thrombin light chain; s 6.0 1.6E+02 0.0053 20.5 0.6 12 38-49 7-18 (36)
8 2gtl_N Extracellular hemoglobi 5.8 7.1E+02 0.024 23.3 5.2 71 104-179 117-192 (220)
9 3rko_A NADH-quinone oxidoreduc 5.6 6.8E+02 0.023 21.8 4.7 35 254-294 51-86 (147)
10 3ixz_B Potassium-transporting 5.5 4E+02 0.014 25.8 3.4 34 364-401 21-57 (290)
No 1
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=14.72 E-value=44 Score=25.03 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.4
Q ss_pred HHHhcccCCCcc
Q 014954 294 IRQMEHSNTQSG 305 (415)
Q Consensus 294 irQMk~S~TPSt 305 (415)
++|+++++|||+
T Consensus 5 ~~ql~~~~s~ss 16 (57)
T 1b35_D 5 LKQLETNNSPST 16 (57)
T ss_dssp HHHHHHTTSSCC
T ss_pred HHHHHhcCCcch
Confidence 589999999993
No 2
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=13.47 E-value=24 Score=22.56 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=13.1
Q ss_pred eeEEEeeeeecCCCceEEEEe
Q 014954 142 AQIRVEGVYIWPFRQLRMVAH 162 (415)
Q Consensus 142 ~~~rl~GV~~Wp~rq~~~~~t 162 (415)
|+.--+.|. |.||||+++|
T Consensus 3 wel~kenvq--plrqgrim~t 21 (26)
T 4ggd_C 3 WELSKENVQ--PLRQGRIMST 21 (26)
T ss_pred cccchhccc--hhhccchhhh
Confidence 444445565 8899998875
No 3
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=10.04 E-value=1.8e+02 Score=25.54 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=48.1
Q ss_pred cchhhhhhcccCccceeeccCCCccCCccccceeEEEEeE--EEEeCCCCccccccccccccceEEEEEecCCCccCCee
Q 014954 44 PLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGT--WKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVH 121 (415)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~tG~~~G~--W~~~~~~n~s~~~p~~t~~~G~~~~~L~~~~t~~~~v~ 121 (415)
-+||.+.+..|-.-+.-.+.+..+.=++..+-++|+-||+ |+.+++ |.|...+-++-|+--.-.+ ..+|
T Consensus 57 DIKEev~a~DWIGLy~ide~~~~n~ld~knRgvngt~kGqi~W~i~~~-------~yf~e~eTkiCFKYYhg~S--gaLR 127 (138)
T 2lfe_A 57 DIKEEVDPSDWIGLYHIDENSPANFWDSKNRGVTGTQKGQIVWRIEPG-------PYFMEPEIKICFKYYHGIS--GALR 127 (138)
T ss_dssp ECCSCCCTTCEEEEEECCSSCTTCCCEECCTTCSSCSEEEEEECCCSS-------TTCCSSEEEEEEEEEETTT--TEEE
T ss_pred eccCccCccceEEEEEecCCCccchhhhhccccccceeeeEEEEEcCC-------CccccceeEEEEEEecCcc--ccee
Confidence 3577777777765555555555555566678889999997 666643 7787777777777654433 2244
Q ss_pred EEEEEEEE
Q 014954 122 YVQGVIIF 129 (415)
Q Consensus 122 ~v~g~~~i 129 (415)
-+.-.+++
T Consensus 128 AtTP~iTV 135 (138)
T 2lfe_A 128 ATTPCITV 135 (138)
T ss_dssp EECCCEEE
T ss_pred ecCceEEe
Confidence 44433443
No 4
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=9.25 E-value=2.5e+02 Score=27.36 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014954 273 NKAVNYTLMVTFVSFLQVLLLIR 295 (415)
Q Consensus 273 ~kir~yll~~alv~liQI~LLir 295 (415)
.++.-++++++.++++||+|.++
T Consensus 250 ~Ri~gll~F~~~v~laQi~LVLK 272 (292)
T 1q90_A 250 ARIQGLLVFFSFVLLTQVLLVLK 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheee
Confidence 47888999999999999998864
No 5
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=9.19 E-value=2.6e+02 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014954 273 NKAVNYTLMVTFVSFLQVLLLIR 295 (415)
Q Consensus 273 ~kir~yll~~alv~liQI~LLir 295 (415)
.++.-++++++.++++||+|.++
T Consensus 253 ~Ri~gll~F~~~v~laQi~LVLK 275 (289)
T 1vf5_C 253 NRVKWMIAFICLVMLAQLMLILK 275 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheee
Confidence 47788999999999999999875
No 6
>1l4z_B Streptokinase; plasminogen, protein complex, hydrolase/blood clotting complex; 2.80A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1
Probab=7.45 E-value=97 Score=27.03 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=22.6
Q ss_pred CccceeeccCCCccCCccccceeEEEEeEE
Q 014954 55 GDEWLFVRKDENELGPYSEWNITGTYRGTW 84 (415)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~N~tG~~~G~W 84 (415)
|.|||..+.++|..-|- -+++|.++|+=
T Consensus 4 g~~~l~~~p~~n~s~~v--is~~G~ve~T~ 31 (136)
T 1l4z_B 4 GPEALLDRPSVNNSQLV--VSVAGTVEGTN 31 (136)
T ss_dssp CCCCGGGSCCCSSCEEE--EEEEEEETTTC
T ss_pred CcccccCCCCcccccee--EEeeeeeccCC
Confidence 67999999999876553 58889999874
No 7
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=6.04 E-value=1.6e+02 Score=20.46 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=9.6
Q ss_pred cccccccchhhh
Q 014954 38 PVEGLRPLRERA 49 (415)
Q Consensus 38 ~~~~~~~~~~~~ 49 (415)
+.-|+||+.|+.
T Consensus 7 ~~CG~rPlfEk~ 18 (36)
T 3rm2_L 7 ADCGLRPLFEKK 18 (36)
T ss_dssp TTTTCCTTTGGG
T ss_pred cccccCchhhhh
Confidence 456999999983
No 8
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=5.83 E-value=7.1e+02 Score=23.35 Aligned_cols=71 Identities=7% Similarity=0.115 Sum_probs=46.0
Q ss_pred ceEEEEEecCCCcc--CCeeEEEEEEEEEeeecCC-CCccceeEEEeeeeecCCCceEEEEeccCc--CCCCCCCccccc
Q 014954 104 GNSITELVSTPTKI--NGVHYVQGVIIFHDVFDNE-HNVGGAQIRVEGVYIWPFRQLRMVAHSGKQ--GELSQEDDYILS 178 (415)
Q Consensus 104 G~~~~~L~~~~t~~--~~v~~v~g~~~i~D~~~s~-~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~e--g~l~~~~d~f~s 178 (415)
=++.|.|++.+++. +..--|+|++.++.+.+.. .+ .-+.+.|+|=. ..=++++.+..+ ++|.--=+|...
T Consensus 117 ~~~~i~Its~~r~~~f~s~~~v~a~~~~~~~~~g~~~~---~sl~~~G~Y~f--g~~~l~l~pp~~~~d~lg~vc~F~~~ 191 (220)
T 2gtl_N 117 HVTRITITASKRRKFFTARIWLRALVESELERHGENVT---SSFNAKGYYNF--ASRRLILLPTDDHDDHLAVVCSFNRG 191 (220)
T ss_dssp EEEEEEEEEEECCTTCTTCEEEEEEEECEEECSSSEEE---CCEEEEEEEET--TTTEEEEEESSCTTCCCEEEEECCSS
T ss_pred ceEEEEEEeccccccccccceEEEEEEEEEecCCceEE---EeeeeeeEEec--ccceEEecCCCcCCCceEEEEEecCC
Confidence 46788888888765 5677799999888753221 22 34688899844 444555556665 565555555555
Q ss_pred C
Q 014954 179 N 179 (415)
Q Consensus 179 n 179 (415)
|
T Consensus 192 ~ 192 (220)
T 2gtl_N 192 D 192 (220)
T ss_dssp S
T ss_pred C
Confidence 5
No 9
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=5.60 E-value=6.8e+02 Score=21.81 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=13.8
Q ss_pred CCCceEEEeEEeehhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 014954 254 DCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSF-LQVLLLI 294 (415)
Q Consensus 254 DCG~~Lel~l~G~k~Ev~~~kir~yll~~alv~l-iQI~LLi 294 (415)
+||+.=.-++.. .-.++-|++....+.+ +|+.++.
T Consensus 51 ECGfdp~~~ar~------~FsirFfLiAilFlIFDvEi~~L~ 86 (147)
T 3rko_A 51 ESGIDSVGSARL------RLSAKFYLVAMFFVIFDVEALYLF 86 (147)
T ss_dssp -----------C------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCC------CCcchhHHHHHHHHHHHHHHHHHH
Confidence 899874322221 2345556666655555 7777766
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=5.50 E-value=4e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHhcCCC---CCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014954 364 IWKASRPM---NNGEGWETMRRELSVLYSRFCKCCCIVDKL 401 (415)
Q Consensus 364 IwksQ~pE---~~~e~we~lRR~ls~ly~rFY~~Lil~~~~ 401 (415)
||-.+..| |.+..|- .+..||.-||++|+.+|.+
T Consensus 21 ~~N~~t~~~lGRT~~sW~----~IllFYliFY~~LaglFa~ 57 (290)
T 3ixz_B 21 CWNPDTGQMLGRTLSRWV----WISLYYVAFYVVMSGIFAL 57 (290)
T ss_pred EEcCCCCceeCcchhhHH----HHHHHHHHHHHHHHHHHHH
Confidence 55555444 3334563 4789999999999777763
Done!