Query 014954
Match_columns 415
No_of_seqs 125 out of 137
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 04:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtlo1 b.61.7.1 (O:101-222) E 32.7 43 0.0032 26.8 6.3 71 104-179 23-96 (122)
2 d1vf5c3 f.23.23.1 (C:250-286) 32.5 27 0.002 22.8 4.0 23 273-295 4-26 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 30.6 29 0.0021 23.5 4.0 23 273-295 3-25 (45)
4 d1l0wa1 b.40.4.1 (A:1-104) Asp 30.2 1E+02 0.0076 23.2 8.0 71 79-150 20-98 (104)
5 d1oq1a_ b.29.1.17 (A:) Hypothe 9.2 1.4E+02 0.01 23.6 4.3 43 122-166 5-47 (223)
6 d2foka4 c.52.1.12 (A:387-579) 8.5 1.4E+02 0.01 25.4 4.0 37 240-278 63-102 (193)
7 d1eova1 b.40.4.1 (A:71-204) As 6.9 4.7E+02 0.034 19.7 8.0 72 78-150 39-125 (134)
8 d2hj1a1 d.15.3.4 (A:11-87) Hyp 5.1 4.1E+02 0.03 19.0 4.6 23 213-235 47-69 (77)
9 d1c0aa1 b.40.4.1 (A:1-106) Asp 4.7 5.9E+02 0.043 18.4 6.6 71 79-150 19-100 (106)
10 d1q8ha_ g.32.1.1 (A:) Osteocal 4.4 1.1E+02 0.008 19.5 0.6 11 384-394 26-36 (37)
No 1
>d2gtlo1 b.61.7.1 (O:101-222) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=32.65 E-value=43 Score=26.82 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=47.8
Q ss_pred ceEEEEEecCCCcc--CCeeEEEEEEEEEeeec-CCCCccceeEEEeeeeecCCCceEEEEeccCcCCCCCCCcccccC
Q 014954 104 GNSITELVSTPTKI--NGVHYVQGVIIFHDVFD-NEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSN 179 (415)
Q Consensus 104 G~~~~~L~~~~t~~--~~v~~v~g~~~i~D~~~-s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~eg~l~~~~d~f~sn 179 (415)
=++.|.+++.+++. +..--|+|.+.++++.+ -..+ .-..+.|+|- |..=++++.+..+++|.--=+|...|
T Consensus 23 ~~m~i~Its~~r~~~F~s~~~v~a~v~~~~~~~g~~~~---~s~~~~G~Y~--~g~~~L~l~pp~~dgLg~vC~F~g~d 96 (122)
T d2gtlo1 23 EHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESE---VSMPADGEYS--FADHRLTIHPPEEDGLGLVGEFDGYN 96 (122)
T ss_dssp SEEEEEEEEEEECTTCTTEEEEEEEEEEECCCSSCCCE---EEEEEEEEEE--TTTTEEEECCSSTTTEEEEEEECSSC
T ss_pred CeEEEEEEecccccccCccceEEEEEEEEEecCCceEE---EEeeeeEEEe--ccceEEEEcCCCCCcEEEEEEEcCCC
Confidence 36788888888755 67778999999999443 3444 4678889884 45556666666665555444554444
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=32.51 E-value=27 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014954 273 NKAVNYTLMVTFVSFLQVLLLIR 295 (415)
Q Consensus 273 ~kir~yll~~alv~liQI~LLir 295 (415)
.++.-++.+++.+.++|++|.++
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlK 26 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILK 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777889999999999998875
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=30.56 E-value=29 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014954 273 NKAVNYTLMVTFVSFLQVLLLIR 295 (415)
Q Consensus 273 ~kir~yll~~alv~liQI~LLir 295 (415)
.++.-++.+++.+.++|++|.++
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLK 25 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLK 25 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999998864
No 4
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=30.16 E-value=1e+02 Score=23.17 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=49.4
Q ss_pred EEEeEEEEeCCCCccccccccccccceEEEEEecCCC--------ccCCeeEEEEEEEEEeeecCCCCccceeEEEeeee
Q 014954 79 TYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPT--------KINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVY 150 (415)
Q Consensus 79 ~~~G~W~~~~~~n~s~~~p~~t~~~G~~~~~L~~~~t--------~~~~v~~v~g~~~i~D~~~s~~~~~~~~~rl~GV~ 150 (415)
++.| |+..---+....|-+++..+|.+.+-++.++. +.+.+-.|+|.+.-+++.+.....|+.|+....+.
T Consensus 20 ~l~G-WV~~~R~~g~i~Fi~LRD~~G~iQ~v~~~~~~~~~~~~~l~~Es~I~V~G~V~~r~~~n~~~~tG~iEi~v~~i~ 98 (104)
T d1l0wa1 20 VLEG-WVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALE 98 (104)
T ss_dssp EEEE-EEEEEEECSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEE
T ss_pred EEEE-EEEehhcCCCeEEEEEECCCCceEEecccchhHHHHHhhcCcccEEEEEEEEeeCCccCCCCCCCCEEEEEeEEE
Confidence 3555 77654333456688899999998888765442 23457779999876665555555688999988876
No 5
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
Probab=9.22 E-value=1.4e+02 Score=23.65 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=34.7
Q ss_pred EEEEEEEEEeeecCCCCccceeEEEeeeeecCCCceEEEEeccCc
Q 014954 122 YVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQ 166 (415)
Q Consensus 122 ~v~g~~~i~D~~~s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~e 166 (415)
+-+|++.++|-+.++-++.||++. |==.|.-+.|.|..++..+
T Consensus 5 ~~~g~~l~~~~l~n~kdL~gW~~~--g~g~~~vedG~L~~~~~~~ 47 (223)
T d1oq1a_ 5 YKEGACLYRNPLRSKSDVKDWRME--GGGQISFDDHSLHLSHVQD 47 (223)
T ss_dssp EEEEEEEEEECCCSGGGGTTCEEE--ESEEEECGGGSEEEEESST
T ss_pred ccCccEEEecCCCCCCCCCCCeeC--CCCEEEEECCEEEEeccCC
Confidence 668999999999999999999864 4323777889988877665
No 6
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI, C-terminal (catalytic) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=8.47 E-value=1.4e+02 Score=25.36 Aligned_cols=37 Identities=14% Similarity=-0.124 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCCCCCCCceEEEeEEee---hhHHHHHHHHHH
Q 014954 240 IEGLMESPAVDDDGDCFSPLLLNATSV---NIEVYYNKAVNY 278 (415)
Q Consensus 240 msGvl~SP~~~~~~DCG~~Lel~l~G~---k~Ev~~~kir~y 278 (415)
=.|++||+..+| |||+.+..++=+. ....+.+.+.+|
T Consensus 63 PDgllys~~~~d--~ygiIvDtKAYS~GYslsi~qadeM~rY 102 (193)
T d2foka4 63 PDGAIYTVGSPI--DYGVIVDTKAYSGGYNLPIGQADEMQRY 102 (193)
T ss_dssp CSEEEECSSSSS--CCEEEEEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCEEEEecCCCC--ceEEEEeccccccCcCCchhHHHHHHHH
Confidence 369999986544 9999999865322 223344444444
No 7
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.92 E-value=4.7e+02 Score=19.67 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=49.1
Q ss_pred EEEEeEEEEeCCCCc-cccccccccccceEEEEEecCCC--------------ccCCeeEEEEEEEEEeeecCCCCccce
Q 014954 78 GTYRGTWKFLDSTNS-SSRFRDFRKSNGNSITELVSTPT--------------KINGVHYVQGVIIFHDVFDNEHNVGGA 142 (415)
Q Consensus 78 G~~~G~W~~~~~~n~-s~~~p~~t~~~G~~~~~L~~~~t--------------~~~~v~~v~g~~~i~D~~~s~~~~~~~ 142 (415)
=+++| |+..----. ...|-+++..+|.+.+-+..++. +.+.+-.|+|.+.-.+.-....+.|+.
T Consensus 39 V~v~G-wV~~~R~~G~kl~F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~ 117 (134)
T d1eova1 39 VLFRA-RVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNL 117 (134)
T ss_dssp EEEEE-EEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEE
T ss_pred EEEEE-EEEEEEeCCCcEEEEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCCCCCcE
Confidence 34555 665431111 24688899999988777754332 234577899999887755555567889
Q ss_pred eEEEeeee
Q 014954 143 QIRVEGVY 150 (415)
Q Consensus 143 ~~rl~GV~ 150 (415)
|+.+..++
T Consensus 118 Ei~v~~i~ 125 (134)
T d1eova1 118 EIHITKIY 125 (134)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999999
No 8
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
Probab=5.10 E-value=4.1e+02 Score=18.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCcceEEeeeEecCCCCCCCCCC
Q 014954 213 KHCNIEIAAQISRVSSTQHEGDH 235 (415)
Q Consensus 213 ~~Cef~i~~Ql~Pl~~~~~e~E~ 235 (415)
.+|..-+|++.-+++...+++|+
T Consensus 47 ~~~~vGIfGk~v~~~~~L~~gDR 69 (77)
T d2hj1a1 47 STNKIGIFSRPIKLTDVLKEGDR 69 (77)
T ss_dssp TTSEEEEEECSCCTTCBCCTTCE
T ss_pred ccccEeEECcCcCCCCcCCCCCE
Confidence 67889999998888765555543
No 9
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=4.74 E-value=5.9e+02 Score=18.43 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=46.1
Q ss_pred EEEeEEEEeCCCCccccccccccccceEEEEEecCCC---------ccCCeeEEEEEEEEEee--ecCCCCccceeEEEe
Q 014954 79 TYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPT---------KINGVHYVQGVIIFHDV--FDNEHNVGGAQIRVE 147 (415)
Q Consensus 79 ~~~G~W~~~~~~n~s~~~p~~t~~~G~~~~~L~~~~t---------~~~~v~~v~g~~~i~D~--~~s~~~~~~~~~rl~ 147 (415)
+++| |+..---.....|-.++-.+|.+.+-+..+.. +.+.+-.|+|.+.-++. .+.....|+.|+...
T Consensus 19 ~v~G-Wv~~~R~~g~i~Fi~LRD~~G~~Q~v~~~~~~~~~~~~~~l~~Es~v~V~G~V~~r~~~~~n~~~~tg~iEi~v~ 97 (106)
T d1c0aa1 19 TLCG-WVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLAS 97 (106)
T ss_dssp EEEE-EEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEE
T ss_pred EEEE-EEEEeeeCCCcEEEEEEcCCeEEeEEecccchhHHHHHHhhCccceEEEEeEEeccCccccCCCCCCCcEEEEEe
Confidence 4555 66543223355688888899999887754321 33567779999876552 233445677899888
Q ss_pred eee
Q 014954 148 GVY 150 (415)
Q Consensus 148 GV~ 150 (415)
.+.
T Consensus 98 ~i~ 100 (106)
T d1c0aa1 98 SLT 100 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 10
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.35 E-value=1.1e+02 Score=19.47 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=7.1
Q ss_pred HHHHHHHHhhH
Q 014954 384 LSVLYSRFCKC 394 (415)
Q Consensus 384 ls~ly~rFY~~ 394 (415)
+.--|+||||.
T Consensus 26 fqeayrrfyg~ 36 (37)
T d1q8ha_ 26 FQEAYRRFYGI 36 (37)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcc
Confidence 34458888863
Done!