Your job contains 1 sequence.
>014955
MQHQRLKQQQQQQQQALMQQALLQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVY
VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF
GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG
RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT
NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK
GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTSSNPLPPPAAAPIP
GLSAADLLAYERQIAMSKMGGVHALMHPQAQHPLKQAAMGVGSAGASQAIYDGFI
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014955
(415 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 1632 8.5e-168 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 1571 2.5e-161 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 1479 1.4e-151 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 572 1.8e-55 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 570 2.9e-55 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 529 6.5e-51 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 529 6.5e-51 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 443 7.7e-50 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 516 1.5e-49 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 516 1.5e-49 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 512 4.1e-49 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 510 6.7e-49 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 495 2.6e-47 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 490 8.8e-47 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 490 8.8e-47 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 488 1.4e-46 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 486 2.3e-46 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 486 2.3e-46 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 484 3.8e-46 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 384 4.7e-46 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 481 7.9e-46 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 480 1.0e-45 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 365 7.6e-44 2
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 367 3.2e-43 2
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 446 4.0e-42 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 446 4.0e-42 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 446 4.0e-42 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 446 4.0e-42 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 446 4.0e-42 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 446 4.0e-42 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 446 4.0e-42 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 446 4.0e-42 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 406 7.0e-38 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 404 1.1e-37 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 384 1.5e-35 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 373 2.2e-34 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 370 4.6e-34 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 352 3.7e-32 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 261 1.2e-30 2
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 336 1.8e-30 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 336 1.8e-30 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 323 4.4e-29 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 259 5.8e-29 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 312 9.6e-28 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 238 2.3e-27 2
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 293 6.6e-26 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 297 1.7e-25 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 288 2.2e-25 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 285 6.3e-25 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 283 7.6e-25 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 281 1.2e-24 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 286 1.5e-24 1
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 273 8.7e-24 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 275 9.8e-24 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 271 2.1e-23 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 231 3.3e-23 2
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 257 4.3e-22 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 208 8.2e-22 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 219 1.1e-21 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 219 1.7e-21 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 219 1.8e-21 2
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 221 2.0e-21 2
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 265 2.4e-21 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 230 2.6e-21 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 221 2.9e-21 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 219 3.6e-21 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 219 3.7e-21 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 219 3.7e-21 2
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 258 6.6e-21 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 258 9.7e-21 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 258 9.7e-21 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 258 9.7e-21 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 258 9.7e-21 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 258 9.7e-21 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 258 9.7e-21 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 226 1.1e-20 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 212 1.6e-20 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 212 1.6e-20 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 229 4.1e-20 3
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 211 4.2e-20 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 229 5.2e-20 3
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 252 6.2e-20 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 180 8.1e-20 3
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 255 9.1e-20 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 210 9.2e-20 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 250 1.1e-19 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 209 1.3e-19 2
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 251 1.4e-19 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 209 2.0e-19 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 209 2.0e-19 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 209 2.3e-19 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 209 2.4e-19 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 209 2.4e-19 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 209 2.7e-19 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 209 2.7e-19 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 209 2.8e-19 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 209 3.0e-19 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 209 3.0e-19 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 209 3.0e-19 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 242 3.1e-19 1
WARNING: Descriptions of 1070 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 1632 (579.6 bits), Expect = 8.5e-168, P = 8.5e-168
Identities = 311/386 (80%), Positives = 334/386 (86%)
Query: 29 YHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL 88
YHPGLLA PQIEPIPSGNLPPGFDPSTCRSVYVGNIH QVTEPLLQEVF+ TGPVE CKL
Sbjct: 26 YHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKL 85
Query: 89 IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGD 148
IRK+KSSYGF+HYFDRRSA +AILSLNGRHLFGQPIKVNWAYASGQREDTS HFNIFVGD
Sbjct: 86 IRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGD 145
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
LSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AI+++TGKWL
Sbjct: 146 LSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWL 205
Query: 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
GSRQIRCNWATKGA + EDKQSSD+KSVVELT+G SEDGK+TTN EAPENN QYTTVYVG
Sbjct: 206 GSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVG 265
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328
NLAPEV+Q+DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT SYL
Sbjct: 266 NLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNT--HSYL 323
Query: 329 FGKQMKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHALMH- 387
G+QMKCSWGSK DLLAYERQ+AMSKM G++ +MH
Sbjct: 324 SGRQMKCSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHH 383
Query: 388 PQAQHPLKQAAMGVGSAGASQAIYDG 413
PQ QH KQAAMG + G++QAIYDG
Sbjct: 384 PQGQHAFKQAAMG--ATGSNQAIYDG 407
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 1571 (558.1 bits), Expect = 2.5e-161, P = 2.5e-161
Identities = 297/385 (77%), Positives = 327/385 (84%)
Query: 29 YHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL 88
YHPG+LA PQ+EP+PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQE+F+STGPVE KL
Sbjct: 31 YHPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKL 90
Query: 89 IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGD 148
IRKDKSSYGF+HYFDRRSAA+AILSLNGRHLFGQPIKVNWAYA+GQREDTS HFNIFVGD
Sbjct: 91 IRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGD 150
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
LSPEVTDATL+ FSV+ SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++ GKWL
Sbjct: 151 LSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWL 210
Query: 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
SRQIRCNWATKGA + +DK SSD KSVVELT GSSEDGKET N E PENN Q+TTVYVG
Sbjct: 211 SSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVG 270
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328
NLAPEVTQLDLHR+FH+LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGNT YL
Sbjct: 271 NLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT--QPYL 328
Query: 329 FGKQMKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHALMHP 388
F +Q+KCSWG+K DLL YERQ+A+SKM V+ALMH
Sbjct: 329 FNRQIKCSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQ 388
Query: 389 QAQHPLKQAAMGVGSAGASQAIYDG 413
Q QHPL+QA G+ +AGA+ A+YDG
Sbjct: 389 QGQHPLRQAH-GINAAGATAAMYDG 412
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
Identities = 279/389 (71%), Positives = 319/389 (82%)
Query: 29 YHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL 88
YHPG++A PQ+EP+PSGNLPPGFDP+TCRSVY GNIHTQVTE LLQE+F+STGP+E CKL
Sbjct: 35 YHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKL 94
Query: 89 IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGD 148
IRKDKSSYGF+HYFDRR A+MAI++LNGRH+FGQP+KVNWAYA+GQREDTS HFNIFVGD
Sbjct: 95 IRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGD 154
Query: 149 LSPEVTDATLFACFSVYPSCS----DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204
LSPEVTDA LF FS + SCS DARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 214
Query: 205 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
GKW+ SRQIRCNWATKGA EDK SSD KSVVELTNGSSEDG+E +N +APENNPQ+TT
Sbjct: 215 GKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTT 274
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
VYVGNL+PEVTQLDLHR F++LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA-- 332
Query: 325 SSYLFGKQMKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHA 384
+LF +Q++CSWG+K DLLAYERQ+A++KM
Sbjct: 333 QPFLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAKM----- 387
Query: 385 LMHPQAQHPLKQAAMGVGSAGASQAIYDG 413
HPQAQH L+QA +GV AG + A+YDG
Sbjct: 388 --HPQAQHSLRQAGLGVNVAGGTAAMYDG 414
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 129/295 (43%), Positives = 176/295 (59%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS------SYGFIHYFDRRSAAMA 110
R++YVG + +VTE +L+++F +TG V K+I DK+ +YGF+ + D +A A
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKII-PDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 111 ILSLNGRHLFGQPIKVNWAYASG--QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
+ +LNGR + I+VNWAY S +EDTS HF+IFVGDLS EV D L FS + S
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSV 208
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNED 227
S+ARVMWD KTGRSRG+GFV+FR + DA+ A+ + G+WLGSR IRCNWA KG +
Sbjct: 209 SEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQ 268
Query: 228 KQSSDAKSVVELTN-GSSE---DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283
+Q+ A + T G G ++ + + TT YVGNL P TQ D+ F
Sbjct: 269 QQAMAAMGMTPTTPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPLF 328
Query: 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
+ G VIE R+Q D+GF F++ TH AA AI N + G+ +KCSWG
Sbjct: 329 QNFGY-VIE-TRMQADRGFAFIKMDTHENAASAICQLNGYNVN---GRPLKCSWG 378
Score = 115 (45.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSA 107
D S ++VG++ +V + +L + FS+ G V +++ K+ YGF+ + +R A
Sbjct: 177 DTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADA 236
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQ 134
A+ S++G L + I+ NWA GQ
Sbjct: 237 EKALTSMDGEWLGSRAIRCNWANQKGQ 263
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 131/294 (44%), Positives = 178/294 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
R++YVG + +VTE +L+++F +TG V+ K+I DK++ YGF+ Y D +A A+
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKII-PDKNAKGYNYGFVEYDDPGAADRAMQ 143
Query: 113 SLNGRHLFGQPIKVNWAY---ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
+LNGR + I+VNWAY S +EDTS HF+IFVGDLS EV D L FSV+ S S
Sbjct: 144 TLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVS 203
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDK 228
+ARVMWD KTGRSRG+GFV+FR++ DA+ A++ + G+WLGSR IRCNWA KG + +
Sbjct: 204 EARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQ 263
Query: 229 QSSDAKSVVELTN-GSSEDGKETTNT-EAPENN-PQY-TTVYVGNLAPEVTQLDLHRHFH 284
Q+ A + T G + E N P Y TT YVGNL P T D+ F
Sbjct: 264 QAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQ 323
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
+ G V+E R Q D+GF F++ +H AA AI N + G+ +KCSWG
Sbjct: 324 NFGY-VVES-RFQADRGFAFIKMDSHENAAQAICGLNGYNVN---GRPLKCSWG 372
Score = 116 (45.9 bits), Expect = 0.00074, P = 0.00074
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSA 107
D S ++VG++ +V + +L + FS G V +++ K+ YGF+ + DR A
Sbjct: 171 DTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDA 230
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQ 134
A+ S++G L + I+ NWA GQ
Sbjct: 231 EKALSSMDGEWLGSRAIRCNWANQKGQ 257
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 115/275 (41%), Positives = 168/275 (61%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAM 109
D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 110 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 184 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 230
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 231 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Score = 131 (51.2 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 257 IVSVNGTT---IEGHVVKCYWGKE 277
Score = 111 (44.1 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 115/275 (41%), Positives = 168/275 (61%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAM 109
D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 110 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 184 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 230
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 231 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Score = 131 (51.2 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 257 IVSVNGTT---IEGHVVKCYWGKE 277
Score = 111 (44.1 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 443 (161.0 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 97/229 (42%), Positives = 140/229 (61%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVT 154
Y F+ +F+ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 127
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 128 TDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 187
Query: 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274
NWAT+ + Q + AK + D E N +P+N TVY G + +
Sbjct: 188 TNWATRKPPAPKSVQDNSAKQL-------RFD--EVVNQSSPQN----CTVYCGGIQSGL 234
Query: 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
T+ + + F G I E+RV +KG+ F+R+S+H AA AI N T
Sbjct: 235 TEHLMRQTFSPFGQ--IMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGT 281
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 55/211 (26%), Positives = 96/211 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQ 194
ED S ++VG+LS +VT+ + F+ C +++ +Q + R + F Q
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQ 61
Query: 195 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTE 254
ND ++ + R A A N + K V T SS+ K+T+N
Sbjct: 62 HTS---ND-PYCFVEFFEHRDAAAALAAMNGRKILGKEVK-VNWATTPSSQK-KDTSN-- 113
Query: 255 APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTH 310
+ V+VG+L+PE+T D+ F G A V++++ + KG+GFV +
Sbjct: 114 -------HFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNK 166
Query: 311 AEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+A AI MG +L G+Q++ +W ++
Sbjct: 167 LDAENAIVHMGG----QWLGGRQIRTNWATR 193
Score = 126 (49.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++PQ TVY G + +T+ + + F G I E+RV +KG+ F+R+S+H AA A
Sbjct: 217 QSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQ--IMEIRVFPEKGYSFIRFSSHESAAHA 274
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 275 IVSVNGTT---IEGHVVKCYWGKE 295
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P C +VY G I + +TE L+++ FS G + ++ + Y FI + SAA AI+
Sbjct: 220 PQNC-TVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVF--PEKGYSFIRFSSHESAAHAIV 276
Query: 113 SLNGRHLFGQPIKVNWAYAS 132
S+NG + G +K W S
Sbjct: 277 SVNGTTIEGHVVKCYWGKES 296
Score = 108 (43.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 110 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDA 169
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 170 ENAIVHMGGQWLGGRQIRTNWA 191
Score = 105 (42.0 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 46/192 (23%), Positives = 84/192 (43%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY----ASGQREDTSG---HFN 143
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA A +D S F+
Sbjct: 154 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFD 212
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSD----------ARVMWDQKTGRSRGFGFVSFRNQ 193
V SP+ + T++ C + ++ ++M + + +G+ F+ F +
Sbjct: 213 EVVNQSSPQ--NCTVY-CGGIQSGLTEHLMRQTFSPFGQIM-EIRVFPEKGYSFIRFSSH 268
Query: 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD-AKSVVELTNGSSEDGKETTN 252
+ A AI + G + ++C W K+S D AK+V + G + G+
Sbjct: 269 ESAAHAIVSVNGTTIEGHVVKCYWG---------KESPDMAKNVQPMEYG--QWGQWNQM 317
Query: 253 TEAPENNPQYTT 264
P+ QY T
Sbjct: 318 YGNPQQYGQYMT 329
Score = 93 (37.8 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS 95
D S +++YVGN+ VTE L+ ++F+ GP + CK+I + S
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDS 46
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 111/270 (41%), Positives = 164/270 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ +++ R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + S D + N +P N TVY G + +T+ + + F G I E
Sbjct: 187 KQL-------SYD--DVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 231
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
+RV DKG+ FVR+++H AA AI N T
Sbjct: 232 IRVFPDKGYSFVRFNSHESAAHAIVSVNGT 261
Score = 124 (48.7 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P TVY G + +T+ + + F G I E+RV DKG+ FVR+++H AA A
Sbjct: 197 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHA 254
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 255 IVSVNGTT---IEGHVVKCYWGKE 275
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 200 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 256
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 257 SVNGTTIEGHVVKCYW 272
Score = 107 (42.7 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ +F++ A
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI + G+ L G+ I+ NWA
Sbjct: 150 ENAIQQMGGQWLGGRQIRTNWA 171
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 113/275 (41%), Positives = 163/275 (59%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKSSYGFIHYFDRRSAAM 109
D +++YVGN+ VTE L+ ++F GP + CK+I Y F+ +F+ R AA
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAA 62
Query: 110 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
++ ++NGR + G+ +KVNWA + S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 63 SLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRI 122
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-------- 174
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
+ K+ E TN E N +P N TVY G + +T+ + + F G
Sbjct: 175 KPPAPKATYE-TNTKHLSFDEVVNQSSPSN----CTVYCGGVTTGLTEQLMRQTFSPFGQ 229
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
I EVRV DKG+ FVR+++H AA AI N T
Sbjct: 230 --IMEVRVFPDKGYSFVRFNSHESAAHAIVSVNGT 262
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/107 (36%), Positives = 52/107 (48%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K+ E TN E N +P N TVY G + +T+ + + F G I E
Sbjct: 180 KATYE-TNTKHLSFDEVVNQSSPSN----CTVYCGGVTTGLTEQLMRQTFSPFGQ--IME 232
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
VRV DKG+ FVR+++H AA AI N T L G +KC WG +
Sbjct: 233 VRVFPDKGYSFVRFNSHESAAHAIVSVNGTS---LEGHIVKCYWGKE 276
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + T +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 201 PSNC-TVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVF-PDKG-YSFVRFNSHESAAHAIV 257
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG L G +K W
Sbjct: 258 SVNGTSLEGHIVKCYW 273
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 112/275 (40%), Positives = 166/275 (60%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAM 109
D R++YVGN+ VTE L+ +VFS GP + CK+I + Y F+ +++ R AA
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 110 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE++ + A F+ +
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
SDARV+ D TG+S+G+GF+SF N+ DA+SAI + G+WLG RQIR NWAT+ + K
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKP--SAPK 181
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
+++ S L+ +E N +P N TVY G +A ++ + + F G
Sbjct: 182 SNNEGASSKHLSY------EEVLNQSSPSN----CTVYCGGIASGLSDQLMRQTFSPFGQ 231
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
I E+RV +KG+ FVR+ +H AA AI N T
Sbjct: 232 --IMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGT 264
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 111/270 (41%), Positives = 163/270 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + S D E + +P N TVY G + +T+ + + F G I E
Sbjct: 187 KQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 231
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
+RV DKG+ F+R+S+H AA AI N T
Sbjct: 232 IRVFPDKGYSFIRFSSHESAAHAIVSVNGT 261
Score = 124 (48.7 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P TVY G + +T+ + + F G I E+RV DKG+ F+R+S+H AA A
Sbjct: 197 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHA 254
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 255 IVSVNGTT---IEGHVVKCYWGKE 275
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P C +VY G + + +TE L+++ FS G + ++ DK Y FI + SAA AI+
Sbjct: 200 PGNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFIRFSSHESAAHAIV 256
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 257 SVNGTTIEGHVVKCYW 272
Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
Identities = 35/146 (23%), Positives = 65/146 (44%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA----------YASGQRE---- 136
K K YGF+ +F++ A AI + G+ L G+ I+ NWA Y S ++
Sbjct: 134 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 192
Query: 137 -----DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+ G+ ++ G ++ +T+ + FS + + RV D +G+ F+ F
Sbjct: 193 EVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFS 246
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNW 217
+ + A AI + G + ++C W
Sbjct: 247 SHESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 107 (42.7 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ +F++ A
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI + G+ L G+ I+ NWA
Sbjct: 150 ENAIQQMGGQWLGGRQIRTNWA 171
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 113/298 (37%), Positives = 169/298 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-YGFIHYFDRRSAAMA 110
D S +++YVGN+ + V+E LL +FS+ GPV+ CK+IR+ + Y FI Y + ++A A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTA 61
Query: 111 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
+ ++N R + IKVNWA + G + D S H +IFVGDLSPE+ TL F+ +
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
S+ R++ D T +S+G+ FVSF + +A++AI + G+W+GSR IR NW+T+ +
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREP 181
Query: 229 QSSDAKSVVE---LTNGSSEDGKETTNTEAPEN--NPQYTTVYVGNLAPEVTQLDL-HRH 282
+ NGS G + E N +P TTVY G P V DL H+H
Sbjct: 182 SKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKH 241
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
F G I++VRV +DKGF F+++ T AA AI+ T +S + G +KC WG +
Sbjct: 242 FVQFGP--IQDVRVFKDKGFSFIKFVTKEAAAHAIEH---THNSEVHGNLVKCFWGKE 294
Score = 116 (45.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 45 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSS-YGFIH 100
GN P D S+ ++VG++ ++ L+E F+ G + C+++R KS Y F+
Sbjct: 84 GNQPKT-DISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVS 142
Query: 101 YFDRRSAAMAILSLNGRHLFGQPIKVNWA 129
+ + A AI ++NG+ + + I+ NW+
Sbjct: 143 FVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
Score = 74 (31.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 144 IFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++ G P V +D + F + D RV D +GF F+ F ++ A AI
Sbjct: 223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD------KGFSFIKFVTKEAAAHAIEH 276
Query: 203 LTGKWLGSRQIRCNWATKGAGNN 225
+ ++C W + G+N
Sbjct: 277 THNSEVHGNLVKCFWGKENGGDN 299
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 112/281 (39%), Positives = 164/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ +++ R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYW 283
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 112/281 (39%), Positives = 164/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ +++ R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYW 283
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 107/260 (41%), Positives = 156/260 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + S D E N +P N TVY G + +T+ + + F G I E
Sbjct: 187 KQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 231
Query: 294 VRVQRDKGFGFVRYSTHAEA 313
+RV DKG+ FVR T + A
Sbjct: 232 IRVFPDKGYSFVR-QTQSSA 250
Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 215 CNWATKGAGNN-----EDKQSSDAKSVVELTNGSSEDGKE------TTNTEAPENNPQYT 263
C AGN+ E + A + + NG GKE TT + ++ +
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ- 318
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AIQ
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 319 MGNTTQSSYLFGKQMKCSWGSK 340
MG +L G+Q++ +W ++
Sbjct: 156 MGG----QWLGGRQIRTNWATR 173
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 112/281 (39%), Positives = 163/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYW 283
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 112/281 (39%), Positives = 163/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYW 283
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 112/281 (39%), Positives = 163/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E + +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVSQSSPNN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ FVR+S+H AA AI N T
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P TVY G + +T+ + + F G I E+RV DKG+ FVR+S+H AA A
Sbjct: 208 QSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHA 265
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 266 IVSVNGTT---IEGHVVKCYWGKE 286
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P+ C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 211 PNNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFSSHESAAHAIV 267
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 268 SVNGTTIEGHVVKCYW 283
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 384 (140.2 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 87/235 (37%), Positives = 135/235 (57%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-YGFIHYFDRRSAAMAILSLN 115
R++YVGN+ + VTE + +F+ G V K+I + Y F+ + D A+ A+ ++N
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMN 105
Query: 116 GRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
R L + +KVNWA GQ++ DT+ HF++FVGDLS EV + L F + SDA+
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D T +S+G+GFVS+ +++A+ AI + G+WLG R IR NWAT+ G+ E +
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KS E+ N +S D T+VYVGN+A +T+ ++ + F S G
Sbjct: 226 EKSYDEIYNQTSGDN---------------TSVYVGNIA-SLTEDEIRQGFASFG 264
Score = 169 (64.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSL 114
V+VG++ ++V L+E F G V K+IR ++ YGF+ Y R A AI +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFN-----------------IFVGDLSPEVTDAT 157
NG+ L + I+ NWA ++ H+N ++VG+++ +T+
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDE 255
Query: 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217
+ F+ + ++ R+ + +G+ FV F N+ A AI + + +G + +RC+W
Sbjct: 256 IRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
Query: 218 ATKG 221
G
Sbjct: 310 GKTG 313
Score = 116 (45.9 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGN 321
T+VYVGN+A +T+ ++ + F S G I EVR+ + +G+ FV++ AA AI QM N
Sbjct: 241 TSVYVGNIA-SLTEDEIRQGFASFGR--ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNN 297
Query: 322 TTQSSYLFGKQMKCSWG 338
G+ ++CSWG
Sbjct: 298 QDVG----GQLVRCSWG 310
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 111/281 (39%), Positives = 163/281 (58%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 122
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 123 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 182
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E + +P N TVY G + +T+ + +
Sbjct: 183 PAPKSTYESNTKQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQLMRQT 229
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
F G I E+RV DKG+ F+R+S+H AA AI N T
Sbjct: 230 FSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGT 268
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P TVY G + +T+ + + F G I E+RV DKG+ F+R+S+H AA A
Sbjct: 204 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHA 261
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 262 IVSVNGTT---IEGHVVKCYWGKE 282
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P C +VY G + + +TE L+++ FS G + ++ DK Y FI + SAA AI+
Sbjct: 207 PGNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFIRFSSHESAAHAIV 263
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 264 SVNGTTIEGHVVKCYW 279
Score = 116 (45.9 bits), Expect = 0.00052, P = 0.00052
Identities = 35/146 (23%), Positives = 65/146 (44%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA----------YASGQRE---- 136
K K YGF+ +F++ A AI + G+ L G+ I+ NWA Y S ++
Sbjct: 141 KSKG-YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 199
Query: 137 -----DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+ G+ ++ G ++ +T+ + FS + + RV D +G+ F+ F
Sbjct: 200 EVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFS 253
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNW 217
+ + A AI + G + ++C W
Sbjct: 254 SHESAAHAIVSVNGTTIEGHVVKCYW 279
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 105/260 (40%), Positives = 156/260 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+
Sbjct: 123 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 182
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + S D E + +P N TVY G + +T+ + + F G I E
Sbjct: 183 KQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 227
Query: 294 VRVQRDKGFGFVRYSTHAEA 313
+RV DKG+ F+R T + A
Sbjct: 228 IRVFPDKGYSFIR-QTQSSA 246
Score = 123 (48.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 215 CNWATKGAGNN-----EDKQSSDAKSVVELTNGSSEDGKE------TTNTEAPENNPQYT 263
C AGN+ E + A + + NG GKE TT + ++ +
Sbjct: 32 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 91
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ- 318
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AIQ
Sbjct: 92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 151
Query: 319 MGNTTQSSYLFGKQMKCSWGSK 340
MG +L G+Q++ +W ++
Sbjct: 152 MGG----QWLGGRQIRTNWATR 169
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 365 (133.5 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 81/170 (47%), Positives = 106/170 (62%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIR-KDKS--SYGFIHYFDRRSAAMAILSL 114
+YVGN+ +E +QE+FS G PV+ K++ K+K+ +Y FI Y A MA+ +L
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 115 NGRHLFGQPIKVNWAYAS----GQREDTSGH-FNIFVGDLSPEVTDATLFACFSVYPSCS 169
NGR + IKVNWA+ S G +T FNIFVGDLSPEV D L FS + S
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLK 200
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
A VMWD +T RSRG+GFV+F NQ DA+ A+ + G+WL R IRCNWA+
Sbjct: 201 QAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWAS 250
Score = 125 (49.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 252 NTEAPENNPQYTTVYVGNLAPEVTQLDLHR---HFHSLG-AGVIEEVRVQRDKGFGFVRY 307
NTE P N ++VG+L+PEV L F SL A V+ +++ R +G+GFV +
Sbjct: 167 NTEEPLFN-----IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTF 221
Query: 308 STHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339
++A LA+Q T +L G+ ++C+W S
Sbjct: 222 GNQSDAELALQ---TMNGEWLCGRAIRCNWAS 250
Score = 114 (45.2 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGN 321
TTVY+GN+A Q +L + G I + + ++G FV+Y TH AALAI Q+
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFG--FIVDFKFHPERGCAFVKYDTHERAALAIIQLAG 469
Query: 322 TTQSSYLFGKQMKCSWGSK 340
L G+ +KC WG +
Sbjct: 470 FN----LNGRPLKCGWGKE 484
Score = 102 (41.0 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 23/90 (25%), Positives = 51/90 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
+++VG++ +V + L+ FS ++ ++ ++S YGF+ + ++ A +A+ +
Sbjct: 174 NIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQT 233
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFN 143
+NG L G+ I+ NWA S +++ H+N
Sbjct: 234 MNGEWLCGRAIRCNWA--SHKQQQQQQHYN 261
Score = 88 (36.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 125 KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRG 184
+VN A A + S ++VG+L ++ T+ FSV + + + K
Sbjct: 63 QVNAASAKEGGREVSNKI-LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN 121
Query: 185 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ F+ + + A A+N L G+ + +I+ NWA + A
Sbjct: 122 YAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSA 159
Score = 63 (27.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 176 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217
D K RG FV + + A AI L G L R ++C W
Sbjct: 440 DFKFHPERGCAFVKYDTHERAALAIIQLAGFNLNGRPLKCGW 481
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 367 (134.2 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 73/189 (38%), Positives = 114/189 (60%)
Query: 42 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGF 98
+P+ + G + S R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F
Sbjct: 61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAF 119
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATL 158
+ Y A +A+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL
Sbjct: 120 VEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETL 178
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
F +PS VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA
Sbjct: 179 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Query: 219 TKGAGNNED 227
K NN +
Sbjct: 239 AKRDNNNNN 247
Score = 106 (42.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319
P+ TT Y+GN+ T+ DL F + G I + + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCI-- 393
Query: 320 GNTTQSSYLF-GKQMKCSWGSK 340
+++ F G+ ++ WG +
Sbjct: 394 --VALANFPFQGRNLRTGWGKE 413
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 133 (51.9 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 110 (43.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 133 (51.9 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 110 (43.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 133 (51.9 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 110 (43.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 133 (51.9 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 110 (43.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 131 (51.2 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 111 (44.1 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 40 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 96
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 97 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 156
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 157 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL------RFE 210
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 211 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 261
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 262 RFSTHESAAHAIVSVNGT 279
Score = 146 (56.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 62 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 101
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 102 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 150
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 151 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 191
Score = 131 (51.2 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 215 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 272
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 273 IVSVNGTT---IEGHVVKCYWGKE 293
Score = 111 (44.1 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 152 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 210
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 211 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 264
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 265 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 305
Score = 109 (43.4 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 108 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 167
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 168 ENAIVHMGGQWLGGRQIRTNWA 189
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 3 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 55
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 131 (51.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 111 (44.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 105/258 (40%), Positives = 150/258 (58%)
Query: 68 VTE-PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
+TE P + V SS G L Y F+ +++ R AA A+ ++NGR + G+ +KV
Sbjct: 41 ITEQPDSRRVNSSVG---FSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
Query: 127 NWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
NWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE 245
GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + E
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL------RFE 211
Query: 246 DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV 305
D N +P+N TVY G +A +T + + F G I E+RV +KG+ FV
Sbjct: 212 D---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFV 262
Query: 306 RYSTHAEAALAIQMGNTT 323
R+STH AA AI N T
Sbjct: 263 RFSTHESAAHAIVSVNGT 280
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 58/225 (25%), Positives = 102/225 (45%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT T
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------T 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S + K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 PSSQK--KDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 340
+ KG+GFV + +A AI MG +L G+Q++ +W ++
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIRTNWATR 192
Score = 131 (51.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 111 (44.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA------SGQREDT------ 138
K K YGF+ ++++ A AI+ + G+ L G+ I+ NWA S Q +T
Sbjct: 153 KSKG-YGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 211
Query: 139 -----SGHFN--IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S N ++ G ++ +TD + FS + + RV + +G+ FV F
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ A AI + G + ++C W + ++ Q D
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVD 306
Score = 109 (43.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-YGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ KS YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWA 129
AI+ + G+ L G+ I+ NWA
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSSYGF 98
D R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF 56
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 99/297 (33%), Positives = 159/297 (53%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-YGFIHYFDRRSAAMAILSLN 115
R+++V N+ +T+ L +F+ G V K+I + + Y F+ + D A +A+ S N
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHN 99
Query: 116 GRHLFGQPIKVNWAYAS---GQ---REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
GR L + + V WA+ G+ + +TS HF++FVGDL E+ L F + S
Sbjct: 100 GRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVS 159
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-----G--A 222
+A+++ D T + +G+GFVS+ ++DA+ AI+++ G WLG R IR NWAT+ G
Sbjct: 160 EAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERG 219
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
G+ D++ N S + E N A +N T+VYVGN+A + + ++ R
Sbjct: 220 GDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADN----TSVYVGNIA-NLGEDEIRRA 274
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWG 338
F G I EVR + +G+ FV++ T AA AI QM N + G+ ++CSWG
Sbjct: 275 FDRFGP--INEVRTFKIQGYAFVKFETKESAARAIVQMNNAD----IGGQIVRCSWG 325
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 80/178 (44%), Positives = 117/178 (65%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 264 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 320
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 97/292 (33%), Positives = 159/292 (54%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
+++++G++ + E L FS G V K+IR ++ YGF+ + +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 113 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
S NG + QP ++NWA +++G+ R +T F+IFVGDL+ +VTD L F S YPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D TG S+G+GFV F ++ + A+ ++ G + SR +R AT + +
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+ SS A V L+ G + +G T +++ + + TT++VG L EVT +L + F+ G
Sbjct: 264 QYSSQA---VILSGGYASNGAATHGSQS-DGDSSNTTIFVGGLDSEVTDEELRQSFNQFG 319
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 338
V V++ KG GFV++S + A AIQ S + GKQ ++ SWG
Sbjct: 320 EVV--SVKIPAGKGCGFVQFSDRSSAQEAIQK----LSGAIIGKQAVRLSWG 365
Score = 119 (46.9 bits), Expect = 0.00029, P = 0.00029
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 127 NWAYASGQRED-TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185
N A G + D S + IFVG L EVTD L F+ + ++ G+ G
Sbjct: 279 NGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI----PAGK--GC 332
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 234
GFV F ++ AQ AI L+G +G + +R +W A N + + S ++
Sbjct: 333 GFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA-NKQMRTDSGSQ 380
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 96/294 (32%), Positives = 157/294 (53%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
++++VG++ + E L FS TG V K+IR +S YGF+ + R +A +
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 113 SLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSV-YP 166
+ +G + QP ++NWA +++G++ + ++FVGDLSP+VTD L FS YP
Sbjct: 168 NYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYP 227
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNN 225
S A+V+ D TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT K A N
Sbjct: 228 SVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIAN 287
Query: 226 EDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285
+ + SS A V L G +G +++ + T++VG + P+V DL + F
Sbjct: 288 QQQHSSQA---VILAGGHGSNGSMGYGSQS-DGESTNATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 286 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 338
G V V++ KG GFV+++ A AI+ N T + GK ++ SWG
Sbjct: 344 FGEVV--SVKIPVGKGCGFVQFADRKSAEDAIESLNGT----VIGKNTVRLSWG 391
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 108/370 (29%), Positives = 171/370 (46%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAIL 112
R++++G++ V E L FS TG + K+IR YGFI + +A +
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 113 SLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSC 168
+ NG + G + ++NWA + SGQ+ D +IFVGDL+P+VTD L F V Y S
Sbjct: 84 TYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R + AT N +
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK-NVGVQ 202
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
Q K+V +T S+ PE++ TT+ V NL VT+ +L + F LG
Sbjct: 203 QQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGE 262
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKXXXXXXX 347
+ V++ KG+G+V++ T A A+Q + G+Q ++ SW
Sbjct: 263 VIY--VKIPATKGYGYVQFKTRPSAEEAVQR----MQGQVIGQQAVRISWSKNPGQDGWV 316
Query: 348 XXXXXXXXXXXXXXXXXXDLLAY--ERQIAMSKMGGVHALMHPQ---AQHPLKQAAMGVG 402
D AY + ++ GG +PQ + +A G G
Sbjct: 317 TQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAG-G 375
Query: 403 SAGASQAIYD 412
AGA Q +YD
Sbjct: 376 VAGAEQELYD 385
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 30 HPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI 89
+P + + P+ + PP D TC ++ V N+ VTE L++ FS G V K+
Sbjct: 211 YPVTVPSAVAAPVQAYVAPPESDV-TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI- 268
Query: 90 RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134
YG++ + R SA A+ + G+ + Q ++++W+ GQ
Sbjct: 269 -PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 312
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 98/294 (33%), Positives = 159/294 (54%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAIL 112
++++VG++ + E L FS T V K+IR ++ YGF+ + R +A A+
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 113 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSG-HFNIFVGDLSPEVTDATLFACFSV-YP 166
S +G + QP ++NWA +++G+ R +G +IFVGDL+P+V+DA L F+ YP
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNN 225
S A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT K A
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAY 298
Query: 226 EDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285
+ S A + L G +G + ++ NN +T++VG L +VT+ DL + F
Sbjct: 299 GQQNGSQA---LTLAGGHGGNG---SMSDGESNN---STIFVGGLDADVTEEDLMQPFSD 349
Query: 286 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 338
G V V++ KG GFV+++ A AI GN + + GK ++ SWG
Sbjct: 350 FGEVV--SVKIPVGKGCGFVQFANRQSAEEAI--GNLNGT--VIGKNTVRLSWG 397
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 261 (96.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 70/218 (32%), Positives = 113/218 (51%)
Query: 45 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIH 100
G+ PG RS+++G++ + E L VF TG K+IR ++ Y GFI
Sbjct: 69 GSQNPG-SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIE 127
Query: 101 YFDRRSAAMAILSLNGRHLFG--QPIKVNWAY-ASGQREDTSG-HFNIFVGDLSPEVTDA 156
+ + +A + + NG + Q ++NWA +G+R G +FVGDL+P+VTD
Sbjct: 128 FVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDH 187
Query: 157 TLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L F +VY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ SR +R
Sbjct: 188 MLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR- 246
Query: 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT 253
T A N + A + T G+S + + TNT
Sbjct: 247 ---TGPAANKKPLTMQPAS--YQNTQGNSGES-DPTNT 278
Score = 142 (55.0 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 51/198 (25%), Positives = 93/198 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAI 111
+V+VG++ VT+ +L E F + V+G K++ D+++ YGF+ + D A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVN-DRTTGRSKGYGFVRFADESEQIRAM 232
Query: 112 LSLNGRHLFGQPIKVNWAY---------ASGQR-EDTSGHFN-----IFVGDLSPEVTDA 156
+NG++ +P++ A AS Q + SG + IFVG + VT+
Sbjct: 233 TEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTED 292
Query: 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216
L + F + ++ G+ GFV + N+ A+ A++ L G LG + IR +
Sbjct: 293 DLKSVFGQFGELVHVKI----PAGKR--CGFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
Query: 217 WATKGAGNNEDKQSSDAK 234
W + +N+ Q A+
Sbjct: 347 WGR--SPSNKQTQPDQAQ 362
Score = 115 (45.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 308
+ T + E++P TT++VG + VT+ DL F G V V++ K GFV+Y+
Sbjct: 264 QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELV--HVKIPAGKRCGFVQYA 321
Query: 309 THAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
A A A+ + N TQ L G+ ++ SWG
Sbjct: 322 NRACAEQALSVLNGTQ---LGGQSIRLSWG 348
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 64/137 (46%), Positives = 93/137 (67%)
Query: 60 YVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGR 117
YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++NGR
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 118 HLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD 176
+ G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D
Sbjct: 62 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 121
Query: 177 QKTGRSRGFGFVSFRNQ 193
TG+S+G+GFVSF N+
Sbjct: 122 MATGKSKGYGFVSFFNK 138
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 145 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204
+VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 205 GKWLGSRQIRCNWATKGAGNNED 227
G+ + ++++ NWAT + +D
Sbjct: 60 GRKIMGKEVKVNWATTPSSQKKD 82
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 61/122 (50%), Positives = 89/122 (72%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVT 154
Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
+ + F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR
Sbjct: 71 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
Query: 215 CN 216
N
Sbjct: 131 TN 132
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 232 DAKSVVELTNGSSEDGKE------TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285
DA + + NG GKE TT + ++ + V+VG+L+PE+T D+ F
Sbjct: 21 DAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 80
Query: 286 LG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMK 334
G A V++++ + KG+GFV + +A AI MG +L G+Q++
Sbjct: 81 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIR 130
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 100/325 (30%), Positives = 157/325 (48%)
Query: 36 APQIEPIPSGNLPP----GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR- 90
AP P P P G + T ++++G + + E ++ ++ G K+IR
Sbjct: 42 APFQGPAPGEGAPAVAQQGNEGKT--TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRD 99
Query: 91 ----KDKSSYGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWAYASG----QREDTSG 140
+ + Y F+ + +AA A LSLNG + + K+NWA G R+D
Sbjct: 100 KFSGRSNAGYCFVDFASPAAAAKA-LSLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGP 158
Query: 141 HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199
++IFVGDL PEV + L + F S +PSC A++M D +G SRG+GFV F ++ D Q A
Sbjct: 159 EYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRA 218
Query: 200 INDLTGKWLGSRQIRCNWAT---KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAP 256
++++ G + G+R +R + AT KG G + + G+ G P
Sbjct: 219 LSEMQGVYCGNRPMRISTATPKNKGPGVVPGGMGMPGPAGMYPPMGAPPMG--FYGAPQP 276
Query: 257 EN---NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEA 313
N +P TTV+VG L+ VT+ +L F G G I V++ KG GFV++ A
Sbjct: 277 MNQFTDPNNTTVFVGGLSGYVTEDELRSFFQ--GFGEITYVKIPPGKGCGFVQFVQRHAA 334
Query: 314 ALAIQMGNTTQSSYLFGKQMKCSWG 338
+AI N Q + +++ SWG
Sbjct: 335 EMAI---NQMQGYPIGNSRVRLSWG 356
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 259 (96.2 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 64/183 (34%), Positives = 103/183 (56%)
Query: 47 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS---YGFIHYF 102
+P G D + +++++G + + E +++++S+ G K+IR +S Y F+ F
Sbjct: 39 VPQGND--SAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNAGYCFVE-F 95
Query: 103 DRRSAAMAILSLNGRHL-FGQPI-KVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDAT 157
AA L LNG + Q + K+NWA G R D G ++IFVGDL PEV +
Sbjct: 96 PSSEAATKALGLNGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFV 155
Query: 158 LFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216
L + F +PSC A++M D TG+SRG+GFV F ++ D Q A+ ++ G + G+R +R +
Sbjct: 156 LVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRIS 215
Query: 217 WAT 219
AT
Sbjct: 216 TAT 218
Score = 103 (41.3 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
+P TTV+VG L+ VT+ +L F G G I V++ KG GFV++ H AA +
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQ--GFGDITYVKIPPGKGCGFVQF-VHRHAA---E 333
Query: 319 MGNTTQSSYLFGK-QMKCSWG 338
M Y G +++ SWG
Sbjct: 334 MAINQMQGYPIGNSRVRLSWG 354
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 312 (114.9 bits), Expect = 9.6e-28, P = 9.6e-28
Identities = 91/293 (31%), Positives = 149/293 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILS 113
++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A +S
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MS 152
Query: 114 LNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+N + + G K+NWA G RE + + ++IFVGDLSP V + +++ F S Y S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
C A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP------- 265
Query: 228 KQSSDAKSVVELTNGSSED-GKETTNTEAPE-NNPQYTTVYVGNLAPEVTQLDLHRHFHS 285
K + S V + S G + P+ + +TV+VG L+ V++ +L F +
Sbjct: 266 KSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQN 325
Query: 286 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
G I V++ KG GFV++ A +AI N Q L +++ SWG
Sbjct: 326 FGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLSWG 373
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 238 (88.8 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 45/95 (47%), Positives = 68/95 (71%)
Query: 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 194
R DTS HF++FVGDLS +V++ L + F+ + S+A+V+ D +T +S+G+GFVSF N+Q
Sbjct: 218 RIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 277
Query: 195 DAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDK 228
+A++AI + GKW+G R +R NWA K + N DK
Sbjct: 278 NAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDK 312
Score = 208 (78.3 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 60/203 (29%), Positives = 99/203 (48%)
Query: 44 SGNLPP---GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSS-Y 96
S + PP D S V+VG++ V+ LL+ F+ G V K+IR KS Y
Sbjct: 209 SASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 268
Query: 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FN-------- 143
GF+ + ++++A AI +NG+ + + ++ NWA E+ FN
Sbjct: 269 GFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTS 328
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VG++S + TDA L FS Y ++ R+ KT R + FV + ++ A AI ++
Sbjct: 329 VYVGNISQQTTDADLRDLFSTYGDIAEVRIF---KTQR---YAFVRYEKKECATKAIMEM 382
Query: 204 TGKWLGSRQIRCNWATKGAGNNE 226
GK + Q+RC+W A N+
Sbjct: 383 NGKEMAGNQVRCSWGRTQAVPNQ 405
Score = 125 (49.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 33/98 (33%), Positives = 52/98 (53%)
Query: 243 SSEDGKETTNTEAPENNPQY--TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK 300
+SE+ ++ E N+ + T+VYVGN++ + T DL F + G I EVR+ + +
Sbjct: 305 NSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGD--IAEVRIFKTQ 362
Query: 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
+ FVRY A AI N + + G Q++CSWG
Sbjct: 363 RYAFVRYEKKECATKAIMEMNGKEMA---GNQVRCSWG 397
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 91/299 (30%), Positives = 139/299 (46%)
Query: 43 PSGNLPPGFDPSTC---RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
P PP P+T R++++G++ + E L F+ TG + K+IR ++
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQP---IKVNWA-YASGQREDTSGHFNIFVGDLSP 151
YGFI + +A + + N + P ++NWA +SG + D S + IFVGDL+
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAA 164
Query: 152 EVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
+VTD L F YPS A+V+ D+ TGR++G+GFV F ++ + A+ ++ G +
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCST 224
Query: 211 RQIRCNWAT--KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
R +R A KG D S A V TT +N+P TTV+VG
Sbjct: 225 RPMRIGPAASKKGVTGQRDSYQSSAAGV-------------TT-----DNDPNNTTVFVG 266
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAAL----AIQMGNTT 323
L VT L F G V ++ + GF + AE AL +Q+G TT
Sbjct: 267 GLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTT 325
Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 63/239 (26%), Positives = 103/239 (43%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDK-----SSYGFIHYFDRR 105
D S +++VG++ VT+ +L E F ++ P V+G K++ D+ YGF+ + D
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVI-DRVTGRTKGYGFVRFSDES 208
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYA----SGQRED----TSG--------HFNIFVGDL 149
A+ +NG +P+++ A + +GQR+ +G + +FVG L
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 150 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209
VTD L FS Y ++ G+ GFV F + A+ A+ L G LG
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 210 SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
+R +W + N KQS D + G G+E P++ Y Y G
Sbjct: 323 GTTVRLSWG-RSPSN---KQSGDPS---QFYYGGYGQGQEQYGYTMPQDPNAYYGGYSG 374
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 297 (109.6 bits), Expect = 1.7e-25, P = 1.7e-25
Identities = 84/294 (28%), Positives = 147/294 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAI 111
++++G++ + +Q++++S K++R SS Y F+ + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 112 LSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SV 164
+ N + G K+NWA G + + F+IFVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPSC+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP---- 261
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+ + S A S + + S+ + + N + +P TTV+VG LA +++ DL F
Sbjct: 262 -KSRASIAADSALGIVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQ 318
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
G I +++ KG GFV+YS + A AI NT Q + + ++ +WG
Sbjct: 319 PFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWG 367
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 87/293 (29%), Positives = 140/293 (47%)
Query: 32 GLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK 91
G +A P P+GN P+ RS+++G++ + E L F TG + K+IR
Sbjct: 65 GAMATTNPNPSPTGN------PNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRN 118
Query: 92 DKSS----YGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWA-YASGQREDTSGHFNI 144
++ YGF+ + +A + + NG + Q ++NWA +G+R D S I
Sbjct: 119 KQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTI 178
Query: 145 FVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
FVGDL+ +VTD L F SVY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++
Sbjct: 179 FVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEM 238
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
G +R +R G N+ + K+ + N + G E++P T
Sbjct: 239 NGVLCSTRPMRI-----GPAANKKPVGTPQKATYQ--NPQATQG---------ESDPNNT 282
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
T++VG L P V + L + F G V ++ + GF AE AL+
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALS 335
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 59/239 (24%), Positives = 94/239 (39%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKD----KSSYGFIHYFDRRS 106
D S +++VG++ VT+ +LQE F S V G K++ YGF+ + D
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 107 AAMAILSLNGRHLFGQPIKVNWA-------------YASGQR---EDTSGHFNIFVGDLS 150
A+ +NG +P+++ A Y + Q E + IFVG L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
P V + L FS Y +++ ++ G FV F + A+ A++ L G LG
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTRASAEQALSSLNGTQLGG 344
Query: 211 RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN 269
+ IR +W + D+ G G E P +P +Y GN
Sbjct: 345 QSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQ---GYEAYGYAPPAQDPN---MYYGN 397
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
E++P TT++VG L P V + L + F G V V++ K GFV++ T A A A
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV--HVKIVAGKRCGFVQFGTRASAEQA 333
Query: 317 IQMGNTTQSSYLFGKQMKCSWG 338
+ N TQ L G+ ++ SWG
Sbjct: 334 LSSLNGTQ---LGGQSIRLSWG 352
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 285 (105.4 bits), Expect = 6.3e-25, P = 6.3e-25
Identities = 88/272 (32%), Positives = 135/272 (49%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKDKSS----YGFIHYFDRRSAAMA 110
++++VG++H + E L F+S E K+IR + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFSV- 164
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT N
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+Q + NG T T PE + TT++VG L VT DL + F+
Sbjct: 281 GYQQQGG------YMPNG--------TLTR-PEGDIMNTTIFVGGLDSSVTDEDLKQPFN 325
Query: 285 SLGAGVIEEVRVQRDKGF-GFVRYSTHAEAAL 315
G V ++ V + GF FV +AE AL
Sbjct: 326 EFGEIVSVKIPVGKGCGFVQFVN-RPNAEEAL 356
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 54/194 (27%), Positives = 84/194 (43%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI---RKDKSS-YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ +S YGF+ + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 113 SLNG-----RHL-FGQ--PIKVNWAYASG---------QREDTSGHFNIFVGDLSPEVTD 155
+NG R + G P K N G + E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L F+ + ++ G+ G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKI----PVGK--GCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 216 NWATKGAGNN-EDK 228
+W A DK
Sbjct: 372 SWGRNPANKQPRDK 385
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 72/212 (33%), Positives = 115/212 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + Q++E LL E+F GPV + KD+ +YGFI Y A AI
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNV-YVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDA 171
LN L G+PI+VN A + D N+F+G+L P+V + L+ FS + S+
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIASNP 142
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG SRGFGF+S+ + + + +AI +TG++L +RQI ++A K E + +
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGE-RHGT 201
Query: 232 DAKSVVELTNGSSEDGKETT--NTEAPENNPQ 261
A+ ++ TN +++ + T P + PQ
Sbjct: 202 PAERLLAATNPTAQKSRPHTLFAMGPPSSAPQ 233
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 84/286 (29%), Positives = 140/286 (48%)
Query: 45 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIH 100
G+ PG S +S+++G++ + E + VF+ +G K+IR YGFI
Sbjct: 49 GSQNPG-SASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIE 107
Query: 101 YFDRRSAAMAILSLNGRHLFG--QPIKVNWAYA-SGQRE-DTSG-HFNIFVGDLSPEVTD 155
+ A + + NG + Q ++NWA A +G++ T G IFVGDL+PEVTD
Sbjct: 108 FVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTD 167
Query: 156 ATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
L F +VY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ +R +R
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
Query: 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274
G N++ ++ + T G++ A +N+P TT++VG L V
Sbjct: 228 I-----GPAANKNALPMQP-AMYQNTQGAN----------AGDNDPNNTTIFVGGLDANV 271
Query: 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320
T +L F G + ++ + GF AE AL++ G
Sbjct: 272 TDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/199 (25%), Positives = 95/199 (47%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAI 111
+++VG++ +VT+ +L + F + G V+G K++ D+++ YGF+ + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVL-DRTTGRSKGYGFVRFADENEQMRAM 213
Query: 112 LSLNGRHLFGQPIKVNWA-------YASGQREDTSG---------HFNIFVGDLSPEVTD 155
+NG++ +P+++ A ++T G + IFVG L VTD
Sbjct: 214 TEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L + F + ++ G+ GFV + N+ A+ A++ L G LG + IR
Sbjct: 274 DELKSIFGQFGELLHVKI----PPGKR--CGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 216 NWATKGAGNNEDKQSSDAK 234
+W G + +KQS A+
Sbjct: 328 SW-----GRSPNKQSDQAQ 341
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 248 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY 307
+ T A +N+P TT++VG L VT +L F G + V++ K GFV+Y
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGE--LLHVKIPPGKRCGFVQY 302
Query: 308 STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
+ A A A+ + N TQ L G+ ++ SWG
Sbjct: 303 ANKASAEHALSVLNGTQ---LGGQSIRLSWG 330
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 286 (105.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 74/199 (37%), Positives = 109/199 (54%)
Query: 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201
F+IFVGDLS E+ L F+ + SD RV+ D +T +S+G+GFVSF + +A++AI
Sbjct: 96 FHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAIT 155
Query: 202 DLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 261
+ G+WLGSR IR NWAT+ K +AK + + D E N +P N
Sbjct: 156 AMNGQWLGSRSIRTNWATRKPPAT--KADMNAKPL-------TFD--EVYNQSSPTNCTV 204
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
Y G L+ + + L + F G I+E+RV +DKG+ FVR+ST A AI N
Sbjct: 205 YCGGINGALSGFLNEEILQKTFSPYGT--IQEIRVFKDKGYAFVRFSTKEAATHAIVAVN 262
Query: 322 TTQSSYLFGKQMKCSWGSK 340
T+ + + +KC+WG +
Sbjct: 263 NTEINQ---QPVKCAWGKE 278
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 60/294 (20%), Positives = 121/294 (41%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSL 114
++VG++ ++ L++ F+ G + C+++R ++ YGF+ + + A AI ++
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 115 NGRHLFGQPIKVNWAYAS--GQREDTSGH---FNIFVGDLSPEVTDATLFACFSVYPSCS 169
NG+ L + I+ NWA + D + F+ SP T+ T++ C + + S
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSP--TNCTVY-CGGINGALS 214
Query: 170 ---DARVMWDQKT----G--------RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
+ ++ QKT G + +G+ FV F ++ A AI + + + ++
Sbjct: 215 GFLNEEIL--QKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
Query: 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274
C W K+S D + + G+ G + A Y G P
Sbjct: 273 CAWG---------KESGDPNHMSAIAGGALAQGFPFGSAAAAAAAAAYGQQVAGYWYPPA 323
Query: 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAA---LAIQMGNTTQS 325
+L G +Q +GF + +++ + +A + +Q+ T QS
Sbjct: 324 PTYPAAAPASALQPGQF----LQGMQGFTYGQFAGYQQAGYMGMGVQLPGTWQS 373
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 52/123 (42%), Positives = 81/123 (65%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAM 109
D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 110 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 168
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 169 SDA 171
S A
Sbjct: 124 SIA 126
Score = 111 (44.1 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 275 (101.9 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 87/272 (31%), Positives = 135/272 (49%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIR-KDKSS---YGFIHYFDRRSAAMA 110
++++VG++ + E L F+S E K+IR K S YGF+ + A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFSV- 164
+ NG + QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT N
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+Q + +G+ T +E N TT++VG L VT DL + F
Sbjct: 283 GYQQQGG------YMPSGAF------TRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFS 327
Query: 285 SLGAGVIEEVRVQRDKGF-GFVRYSTHAEAAL 315
G V ++ V + GF FV +AE AL
Sbjct: 328 EFGEIVSVKIPVGKGCGFVQFVN-RPNAEEAL 358
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 53/194 (27%), Positives = 86/194 (44%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI---RKDKSS-YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ +S YGF+ + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 113 SLNGRHLFGQPIKVNWAY---ASGQRED----TSGHFN----------IFVGDLSPEVTD 155
+NG + +++ A +G ++ SG F IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L FS + ++ G+ G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKI----PVGK--GCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 216 NWATKGAGNN-EDK 228
+W A DK
Sbjct: 374 SWGRNPANKQPRDK 387
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 271 (100.5 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 73/225 (32%), Positives = 114/225 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
A+ ++ N S+ D +AP P T V L P VT
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAPPP-PSVPTPVVTALGPGVT 233
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 231 (86.4 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 57/161 (35%), Positives = 88/161 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
V D+ G SRGFGFV F + AQ AIN + G L R++
Sbjct: 130 VACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 189 (71.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 52/179 (29%), Positives = 87/179 (48%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK+ + S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F NI+V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 130 (50.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + L + IR W+ + G
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPG 92
Score = 77 (32.2 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-----FGFVRYSTHAEAAL 315
++T +YV NL +V + L F G + V+V RD FGFV + H EA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKML--SVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 316 AI 317
A+
Sbjct: 247 AV 248
Score = 63 (27.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 321
+++ NL + L+ F + G + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMN 159
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 64/154 (41%), Positives = 88/154 (57%)
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
DARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q
Sbjct: 2 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 61
Query: 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289
++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 62 ENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ- 107
Query: 290 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 108 -IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 140
Score = 131 (51.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 76 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 133
Query: 317 IQMGNTTQSSYLFGKQMKCSWGSK 340
I N T + G +KC WG +
Sbjct: 134 IVSVNGTT---IEGHVVKCYWGKE 154
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
P C +VY G I + +T+ L+++ FS G + ++ + Y F+ + SAA AI+
Sbjct: 79 PKNC-TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PEKGYSFVRFSTHESAAHAIV 135
Query: 113 SLNGRHLFGQPIKVNWAYAS 132
S+NG + G +K W S
Sbjct: 136 SVNGTTIEGHVVKCYWGKES 155
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 208 (78.3 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ LI S+Y ++++ + A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIFV +L + + L+ S + + V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F + A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 200 (75.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + S+ G + C ++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L G+ + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 111 (44.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 203 LTGKWLGSRQIRCNWATK 220
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 68 (29.0 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 242 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 298
G + KE E ++ VY+ N ++ L F G + +V +
Sbjct: 171 GQFKSRKER-EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 299 DKGFGFVRYSTHAEAALAIQMGN 321
KGFGFV + H +A A+ N
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMN 252
Score = 56 (24.8 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 300 KGFGFVRYSTHAEAALAIQMGN 321
KG+GFV + TH A AI+ N
Sbjct: 138 KGYGFVHFETHEAAERAIKKMN 159
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 219 (82.2 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 325 NGYRLGDRVLQVSFKT 340
Score = 119 (46.9 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Score = 69 (29.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +T+ L+++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 219 (82.2 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 123 (48.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDKSSY 96
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 187 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 244
Query: 97 GFIHYFDRRSAAMAI---LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+ Y +R + M I SL G ++ G P W IFV +L+P+
Sbjct: 245 --MAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 287
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 348 QVSFKT 353
Score = 119 (46.9 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 219 (82.2 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 47/186 (25%), Positives = 85/186 (45%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDK--- 93
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 187 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 244
Query: 94 SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+YG F + + SL G ++ G P W IFV +L+P+
Sbjct: 245 MAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 288
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 289 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 348
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 349 QVSFKT 354
Score = 119 (46.9 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 221 (82.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 62/172 (36%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
PI SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 56 PIDSGNTE---DSKT--NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 109
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 110 YGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 165
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 367 NGYRLGDRVLQVSFKT 382
Score = 119 (46.9 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 116
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 265 (98.3 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 68/176 (38%), Positives = 98/176 (55%)
Query: 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201
F+IFVGDLS E+ L F+ + SD RV+ D +T +S+G+GFVSF + +A+SAI
Sbjct: 461 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 520
Query: 202 DLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 261
+ G+WLGSR IR NWAT+ K + +++ LT E N +P N
Sbjct: 521 AMNGQWLGSRSIRTNWATR-------KPPASKENIKPLTFD------EVYNQSSPSNCTV 567
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
Y V + +++ L + F GA I+E+RV +DKG+ FVR+ST A AI
Sbjct: 568 YVGG-VNSALTALSEEVLQKTFAPYGA--IQEIRVFKDKGYAFVRFSTKEAATHAI 620
Score = 139 (54.0 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 39/188 (20%), Positives = 88/188 (46%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSL 114
++VG++ +++ L+E F+ G + C+++R ++ YGF+ + + A AI ++
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 115 NGRHLFGQPIKVNWAYAS--GQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
NG+ L + I+ NWA +E+ F+ SP + S + S+
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEE 582
Query: 172 RV---------MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + + + + +G+ FV F ++ A AI + + ++ ++C+W K +
Sbjct: 583 VLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWG-KES 641
Query: 223 GNNEDKQS 230
G+ + Q+
Sbjct: 642 GDPNNAQT 649
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 243 SSEDGKETTNTEA-PENNPQYTTVYVGNLAPEVTQLD---LHRHFHSLGAGVIEEVRVQR 298
S E+ K T E +++P TVYVG + +T L L + F GA I+E+RV +
Sbjct: 544 SKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGA--IQEIRVFK 601
Query: 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
DKG+ FVR+ST A AI + T+ + + +KCSWG +
Sbjct: 602 DKGYAFVRFSTKEAATHAIVGVHNTEIN---AQPVKCSWGKE 640
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 230 (86.0 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 55/161 (34%), Positives = 91/161 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E+FS G + C+ + +S Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + GQPI++ W++ G R SG NIF+ +L + + L+ FS + S ++
Sbjct: 72 MNFEMIKGQPIRIMWSHRDPGLRR--SGMGNIFIKNLENSIDNKALYDTFSTFGSILSSK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
V++++ G SRGFGFV F + AQ AIN + G L R++
Sbjct: 130 VVYNEH-G-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV 168
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 68/277 (24%), Positives = 122/277 (44%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + K++ + S +GF+H+ +
Sbjct: 91 PGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTS------GHFNIFVGDLSPEVTDATLFA 160
A AI ++NG L + + V + S Q+ + G NI+V +L ++ + L
Sbjct: 151 AQKAINTMNGMLLNDRKVFVGH-FKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D G+SRGFGF++F ++AQ A++ + GK + + + A K
Sbjct: 210 LFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
A + + + E N N + N+ + V+ + +T
Sbjct: 269 RAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVF--STYGVITS---- 322
Query: 281 RHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
A V+ E KGFGFV +S+ EA A+
Sbjct: 323 -------AKVMTES--SHSKGFGFVCFSSPEEATKAV 350
Score = 175 (66.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++YV N+ + E LQ++FS G + K++R +GFI++ A A+ +
Sbjct: 192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + GQ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + A+VM + + S+GFGFV F + ++A A+ ++ G+ +G++ +
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 139 (54.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 137 DTSGH----FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192
DT GH +++VGDL P+VT+A L+ FS + RV D T RS G+ +++F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
DA+ A++ + + + + IR W+ + G
Sbjct: 62 PADAERALDTMNFEMIKGQPIRIMWSHRDPG 92
Score = 84 (34.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALA 316
+T +YV NL ++ + L F G + V+V RD +GFGF+ + H EA A
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGK--TQSVKVMRDSNGQSRGFGFINFEKHEEAQKA 247
Query: 317 IQMGNTTQSS 326
+ N + S
Sbjct: 248 VDHMNGKEVS 257
Score = 67 (28.6 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 321
+++ NL + L+ F + G+ + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMN 159
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 221 (82.9 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 69/211 (32%), Positives = 108/211 (51%)
Query: 45 GNLPPGFDPSTCRSVYVG----NIHTQV--TEPLLQEVFSSTGPVEGCKLIRKDKSSYGF 98
G+L P +D +T R ++ NI+ ++ L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQP---IKVNWAYASGQREDTS-------GHFNIFVGD 148
+ + AA A+L NG + P +K+NWA +S + S + +IFVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 149 LSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
L+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N + Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 208 LGSRQIRCNWATKG-----AGNNEDKQSSDA 233
L R I+ T G +GNN+ +SS +
Sbjct: 230 LNGRAIKVG-PTSGQQQHVSGNNDYNRSSSS 259
Score = 92 (37.4 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH--AEAALA 316
+P TTV++G L+ VT+ +L +F G I V++ K GFV+Y AEAA+A
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGT--IVYVKIPVGKCCGFVQYVDRLSAEAAIA 366
Query: 317 IQMGNTTQSSYLFGKQMKCSWG 338
G +S +++ SWG
Sbjct: 367 GMQGFPIANS-----RVRLSWG 383
Score = 90 (36.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKD----KSSYGFIHYFDRRSAA 108
+ C S++VG++ VTE L E+F + K++ YGF+ + +
Sbjct: 161 NNC-SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQ 219
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGH--FNIFVGDLSPEVTDA 156
+A+ + G L G+ IKV SGQ++ SG+ +N L+ E D+
Sbjct: 220 LALSEMQGVFLNGRAIKVG--PTSGQQQHVSGNNDYNRSSSSLNNENVDS 267
Score = 89 (36.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 240 TNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ-----LDLHRHFHSLGAGVIEEV 294
T+ S N ++ N +++VG+LAP VT+ L ++R+ + A ++ +
Sbjct: 144 TSSYSNSNNSLNNVKSGNN----CSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQ 199
Query: 295 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334
KG+GFV+++ E LA+ + Q +L G+ +K
Sbjct: 200 VTGMSKGYGFVKFTNSDEQQLAL---SEMQGVFLNGRAIK 236
Score = 74 (31.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 82 PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH 141
P G L+R D S Y + +++ ++LSL G AS T+G+
Sbjct: 10 PSRG-NLVRNDSSPYTNTISSETNNSSTSVLSLQG--------------ASNVSLGTTGN 54
Query: 142 FNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQ--KTG-RS-------RGFGFVSF 190
+++GDL P T+ ++ + + R+MW+ G RS +G+ FV F
Sbjct: 55 -QLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDF 113
Query: 191 RNQQDAQSAI--NDLTGKWLGSRQIRCNWATKGAGNNED 227
+ A +A+ N + +++++ NWAT N+ +
Sbjct: 114 PSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNN 152
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 219 (82.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 56 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 109
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 165
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 123 (48.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDKSSY 96
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 215 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 272
Query: 97 GFIHYFDRRSAAMAI---LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+ Y +R + M I SL G ++ G P W IFV +L+P+
Sbjct: 273 --MAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 315
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 316 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 375
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 376 QVSFKT 381
Score = 119 (46.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 193 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 238
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 219 (82.2 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 57 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 110
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 166
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 123 (48.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDKSSY 96
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 216 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 273
Query: 97 GFIHYFDRRSAAMAI---LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+ Y +R + M I SL G ++ G P W IFV +L+P+
Sbjct: 274 --MAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 316
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 317 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 376
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 377 QVSFKT 382
Score = 119 (46.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 153
Score = 86 (35.3 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 194 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 239
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 219 (82.2 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 57 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 110
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 166
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 46/181 (25%), Positives = 82/181 (45%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDK--- 93
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 216 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 273
Query: 94 SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+YG F + + SL G ++ G P W IFV +L+P+
Sbjct: 274 MAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 317
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 318 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 377
Query: 214 R 214
+
Sbjct: 378 Q 378
Score = 119 (46.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 153
Score = 86 (35.3 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 194 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 239
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 258 (95.9 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 AVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 258 (95.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 66/206 (32%), Positives = 107/206 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE-DGKETTNTEAP 256
A+ ++ N S+ D +AP
Sbjct: 190 AAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 226 (84.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 59/170 (34%), Positives = 91/170 (53%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDR 104
PGF P S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++
Sbjct: 6 PGF-PLA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
A A+ ++N + GQPI++ W+ G R+ SG NIF+ +L + + L+ FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFS 120
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V+ D G SRGFGFV F + AQ AI + G L R++
Sbjct: 121 TFGNILSCKVVCDDH-G-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Score = 215 (80.7 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 76/276 (27%), Positives = 126/276 (45%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK++ D S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F NI+V +L +V + L
Sbjct: 151 AQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SRGFGFV+F+ ++AQ A+ D+ GK + R + A K
Sbjct: 211 FSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++QS + +L K+ T N Y ++ E + +
Sbjct: 270 V----ERQSELKRRFEQL--------KQDRLTRYQGVN-LYVKNLDDSIDDEKLRKEFSP 316
Query: 282 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+ A V+ E KGFGFV +S+ EA A+
Sbjct: 317 YGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAV 350
Score = 187 (70.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 49/174 (28%), Positives = 89/174 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
++YV N+H V E LQ++FS G + K++R D +GF+++ A A++ +
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ LG++ +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPL 363
Score = 126 (49.4 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + + + IR W+ + G
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPG 92
Score = 84 (34.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 315
++T +YV NL +V + L F G + V+V RD +GFGFV + H EA
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKML--SVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 316 AIQMGNTTQSS 326
A+ N + S
Sbjct: 247 AVMDMNGKEVS 257
Score = 60 (26.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMG 320
+++ NL + L+ F + G I +V D +GFGFV + TH A AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGN--ILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTM 158
Query: 321 N 321
N
Sbjct: 159 N 159
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 212 (79.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 60/172 (34%), Positives = 90/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 123 (48.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDKSSY 96
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 187 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 244
Query: 97 GFIHYFDRRSAAMAI---LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+ Y +R + M I SL G ++ G P W IFV +L+P+
Sbjct: 245 --MAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 287
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 348 QVSFKT 353
Score = 112 (44.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 212 (79.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 60/172 (34%), Positives = 90/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 123 (48.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 48/186 (25%), Positives = 86/186 (46%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDKSSY 96
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 187 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 244
Query: 97 GFIHYFDRRSAAMAI---LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+ Y +R + M I SL G ++ G P W IFV +L+P+
Sbjct: 245 --MAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 287
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 348 QVSFKT 353
Score = 112 (44.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 229 (85.7 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D L
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 206 (77.6 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 48/160 (30%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+ FV F Q+ A AI + G L R++
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Score = 176 (67.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 95 (38.5 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 315
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTL--SVKVMRDCSGKSKGFGFVSYEKHEDANK 246
Query: 316 AIQMGNTTQSS 326
A++ N + S
Sbjct: 247 AVEEMNGKEMS 257
Score = 43 (20.2 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGTVAAA 629
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 211 (79.3 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 60/173 (34%), Positives = 90/173 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ S N D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 55 PVESNNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITEGQSL 108
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 109 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 164
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
T L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 165 TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 51/186 (27%), Positives = 91/186 (48%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDK--- 93
+G PPG +P T + + N +V +L +++ S GP+ + + R D
Sbjct: 215 NGQKPPGATEPITVK--FANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 272
Query: 94 SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+YG I R + MAI + L G +N+ +G +G + IFV +L+P+
Sbjct: 273 MAYGGIK---SRFSPMAIDGMTS--LAG----INFPGHAG-----TG-WCIFVYNLAPDA 317
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 318 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 377
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 378 QVSFKT 383
Score = 104 (41.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSF 190
S ED+ N+ V L +T L + F +++ D+ T G+S G+GFV++
Sbjct: 58 SNNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 229 (85.7 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D L
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 206 (77.6 bits), Expect = 5.2e-20, Sum P(3) = 5.2e-20
Identities = 48/160 (30%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+ FV F Q+ A AI + G L R++
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Score = 176 (67.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 95 (38.5 bits), Expect = 5.2e-20, Sum P(3) = 5.2e-20
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 315
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTL--SVKVMRDCSGKSKGFGFVSYEKHEDANK 246
Query: 316 AIQMGNTTQSS 326
A++ N + S
Sbjct: 247 AVEEMNGKEMS 257
Score = 43 (20.2 bits), Expect = 5.2e-20, Sum P(3) = 5.2e-20
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 640 QAHHAKKEAAQKVGTVAAA 658
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 252 (93.8 bits), Expect = 2.6e-19, P = 2.6e-19
Identities = 79/278 (28%), Positives = 130/278 (46%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D TGRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 218 (81.8 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 60/189 (31%), Positives = 98/189 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ I +S Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ G SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 130 VVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTN 241
AK V+E TN
Sbjct: 185 AK-VMEFTN 192
Score = 157 (60.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 86 (35.3 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F + G + +V + R +GFGFV Y H EA A+
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAV 248
Query: 318 QMGN 321
N
Sbjct: 249 SEMN 252
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 180 (68.4 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 120 FGQPIKVNWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWD 176
F + ++NWA + + ++ F++FVGDLSP T+A L + F + S RVM D
Sbjct: 168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTD 227
Query: 177 QKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
TG SR FGFV F ++ + + A+ +++GKW R +R +AT
Sbjct: 228 PLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYAT 270
Score = 111 (44.1 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 252 NTEAPEN----NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY 307
N P N +P TTV+VG L P+ T+ L F G I VR+ K GFV++
Sbjct: 345 NDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGP--ILNVRIPNGKNCGFVKF 402
Query: 308 STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
+A +IQ G Q + G ++ SWG
Sbjct: 403 EKRIDAEASIQ-G--LQGFIVGGSPIRLSWG 430
Score = 99 (39.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 124 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSR 183
++VN + S + +FVG L P+ T+ L + F + + R+ G++
Sbjct: 342 MRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI----PNGKN- 396
Query: 184 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNG 242
GFV F + DA+++I L G +G IR +W + N + + S +NG
Sbjct: 397 -CGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNG 454
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 53 PSTCR-SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK---SS--YGFIHYFDR 104
PST S++VG++ TE L +F + + K +R D SS +GF+ + D
Sbjct: 187 PSTPEFSLFVGDLSPTATEADLLSLFQTR--FKSVKTVRVMTDPLTGSSRCFGFVRFGDE 244
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYAS 132
A++ ++G+ G+ ++V AYA+
Sbjct: 245 DERRRALIEMSGKWFQGRALRV--AYAT 270
Score = 57 (25.1 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 37 PQIEPIP-SGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS 94
P I P+P S + +P R++++G++ E ++E++S KLIR K+
Sbjct: 15 PYIIPLPPSSTVETSTEPP--RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKN 71
Score = 40 (19.1 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 225 NEDKQSSDAKSV-VELTNGSSEDGKETTNTEAPENN 259
N Q +A S+ ++L NG+S + NT P N
Sbjct: 569 NNLPQFGNAMSISMQLPNGNSNKTASSMNTN-PNTN 603
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 255 (94.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 79/282 (28%), Positives = 134/282 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
A AI +NG L + + V + R+ G F N+++ +L ++ D L
Sbjct: 150 EAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D+ +G+S+GFGFVSF +DA+ A++++ GK L +QI A K
Sbjct: 210 LFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP---QYTTVYVGNLAPEVTQL 277
++ ++ K G + K + P++ Q +YV NL +
Sbjct: 269 KV-----ERQTELKHKF----GQMKQDKPKIE-QVPQDRSVRCQGVNLYVKNLDDGIDDE 318
Query: 278 DLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 319 RLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAV 360
Score = 222 (83.2 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 53/167 (31%), Positives = 92/167 (55%)
Query: 52 DPS-TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGF--IHYFDRRS 106
DPS + S+YVG++H VTE +L E FS GP+ ++ R + S G+ +++
Sbjct: 5 DPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLED 64
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
A A+ ++N + G+P+++ W+ SG NIFV +L + TL+ FS +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V+ D+ G S+G+GFV F Q++A+ AI + G +L R++
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 33/107 (30%), Positives = 58/107 (54%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D+ T RS G+ V+F+ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N D+ S D+K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDR-SIDSKTLYD 117
Score = 80 (33.2 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ NL ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N L GKQ+
Sbjct: 249 DEMNGKD---LNGKQI 261
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 210 (79.0 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 65/195 (33%), Positives = 101/195 (51%)
Query: 47 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHY 101
+P G + S + V + +T+ L+ +F S G +E CKL+R DK + YGF++Y
Sbjct: 59 MPNGSEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLGYGFVNY 116
Query: 102 FDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFA 160
+ + A AI +LNG L + IKV++A +S D N++V L +T L
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQ 172
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWA 218
FS + +R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A
Sbjct: 173 LFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFA 232
Query: 219 TKGAGNNEDKQSSDA 233
NN ++SS A
Sbjct: 233 -----NNPSQKSSQA 242
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +L+P+ + L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 367 NGYRLGDRVLQVSFKT 382
Score = 84 (34.6 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 250 (93.1 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 81/280 (28%), Positives = 132/280 (47%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++QS EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 317
F L G I +V + KGFGFV +S+ EA A+
Sbjct: 313 EF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 216 (81.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 59/189 (31%), Positives = 98/189 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ C+ I +S SY +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ G SRG+GFV F + A AI + G L R++ + E +
Sbjct: 130 VVCDEH-G-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTN 241
AK V+E TN
Sbjct: 185 AK-VMEFTN 192
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 44/174 (25%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
F Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 86 (35.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F + G + +V + R +GFGFV Y H EA A+
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAV 248
Query: 318 QMGN 321
N
Sbjct: 249 SEMN 252
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 209 (78.6 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 104 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 159
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 160 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 214
Query: 230 SSDA 233
SS A
Sbjct: 215 SSQA 218
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 330 NGYRLGDRVLQVSFKTNKA 348
Score = 80 (33.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 251 (93.4 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 79/298 (26%), Positives = 152/298 (51%)
Query: 59 VYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILS 113
+++G++ Q TE + +++ K++R K SY F+ + D+ S +AI
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAI-Q 143
Query: 114 LNGRHL--FGQPIKVNWA--YASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSV-Y 165
NG+ + + K+N++ ++G + ++S ++IF+GDL+PEV+DA L+ F++ Y
Sbjct: 144 RNGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 166 PS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
P+ A+V+ D T +S+GFGFV F + A+ ++ G +GS+ IR A AG+
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLA---AGS 260
Query: 225 NEDKQSSDAKSVVELTNGSSE--DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ D + K V +L + + N NN +T +G L+ +T+ +L +H
Sbjct: 261 HVD---TSFKPVTKLDHHRVPVPQSQPALNQFTDPNNTSFT---IGGLSGRITESELEQH 314
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK-QMKCSWGS 339
F +G G + RV +D G++++ + + A A ++ +++ +WGS
Sbjct: 315 F--IGFGDLVYCRVSKDYQTGYIKFYSRSAAESAF----LNMYGFMINDCRLQITWGS 366
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 209 (78.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 216
Query: 230 SSDA 233
SS A
Sbjct: 217 SSQA 220
Score = 125 (49.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 80 (33.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 209 (78.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 216
Query: 230 SSDA 233
SS A
Sbjct: 217 SSQA 220
Score = 125 (49.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 80 (33.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 209 (78.6 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 221
Query: 230 SSDA 233
SS A
Sbjct: 222 SSQA 225
Score = 125 (49.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 350 NGYRLGDRVLQVSFKTNKA 368
Score = 80 (33.2 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 209 (78.6 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 209
Query: 230 SSDA 233
SS A
Sbjct: 210 SSQA 213
Score = 125 (49.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 80 (33.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Score = 41 (19.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 256 PVPPSACPPRFSPIT 270
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 209 (78.6 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 209
Query: 230 SSDA 233
SS A
Sbjct: 210 SSQA 213
Score = 125 (49.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 80 (33.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Score = 41 (19.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 256 PVPPSACPPRFSPIT 270
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 209 (78.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 216
Query: 230 SSDA 233
SS A
Sbjct: 217 SSQA 220
Score = 125 (49.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 80 (33.2 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Score = 41 (19.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 263 PVPPSACPPRFSPIT 277
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 209 (78.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 216
Query: 230 SSDA 233
SS A
Sbjct: 217 SSQA 220
Score = 125 (49.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 80 (33.2 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Score = 41 (19.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 263 PVPPSACPPRFSPIT 277
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 209 (78.6 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 122 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 177
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 178 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 232
Query: 230 SSDA 233
SS A
Sbjct: 233 SSQA 236
Score = 125 (49.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 361 NGYRLGDRVLQVSFKTNKA 379
Score = 80 (33.2 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 209 (78.6 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 110 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 165
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 166 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 220
Query: 230 SSDA 233
SS A
Sbjct: 221 SSQA 224
Score = 125 (49.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 363 NGYRLGDRVLQVSFKTNKA 381
Score = 80 (33.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Score = 41 (19.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 267 PVPPSACPPRFSPIT 281
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 209 (78.6 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 221
Query: 230 SSDA 233
SS A
Sbjct: 222 SSQA 225
Score = 125 (49.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 80 (33.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Score = 41 (19.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 268 PVPPSACPPRFSPIT 282
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 209 (78.6 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 63/184 (34%), Positives = 96/184 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDKQ 229
R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN ++
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNPSQK 221
Query: 230 SSDA 233
SS A
Sbjct: 222 SSQA 225
Score = 125 (49.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 204 TGKWLGSRQIRCNWATKGA 222
G LG R ++ ++ T A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 80 (33.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Score = 41 (19.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 41 PIPSGNLPPGFDPST 55
P+P PP F P T
Sbjct: 268 PVPPSACPPRFSPIT 282
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 242 (90.2 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 79/275 (28%), Positives = 129/275 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + S+ G + C ++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L G+ + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEA 313
+ F G +V ++ R KGFGFV +S+ EA
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Score = 208 (78.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ LI S+Y ++++ + A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIFV +L + + L+ S + + V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F + A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 111 (44.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 203 LTGKWLGSRQIRCNWATK 220
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 72 (30.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 242 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 298
G + KE E ++ VY+ N ++ L F G + +V +
Sbjct: 171 GQFKSRKER-EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333
KGFGFV + H +A A+ N + L GKQ+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQI 261
Score = 56 (24.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 300 KGFGFVRYSTHAEAALAIQMGN 321
KG+GFV + TH A AI+ N
Sbjct: 138 KGYGFVHFETHEAAERAIKKMN 159
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 210 (79.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 57/170 (33%), Positives = 88/170 (51%)
Query: 43 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YG 97
PS G + + ++ V + +T+ + +F S G +E CKL+R DK + YG
Sbjct: 74 PSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYG 132
Query: 98 FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDA 156
F++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 133 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQK 188
Query: 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 189 ELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 123 (48.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 387 NGYRLGDRVLQVSFKT 402
Score = 109 (43.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 133 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192
G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++ +
Sbjct: 81 GSNDDSKT--NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 138
Query: 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 139 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 173
Score = 80 (33.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Score = 72 (30.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++YV + +T+ L+++FS G + ++ + GFI + R A AI
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQK 258
Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 214 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKT 259
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 251 (93.4 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 82/279 (29%), Positives = 131/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS Y + RVM D+ G+SRGFGFVSF +DAQ A++++ GK + + I A K
Sbjct: 210 IFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRMTRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V + R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAV 350
Score = 202 (76.2 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 47/160 (29%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS G + C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KS-SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++FS G +++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM D GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 119 (46.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL +VT+A L+ FS + RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + R +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 69 (29.3 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 315
++T VY+ N ++ L F G + +RV D +GFGFV + H +A
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAM--SIRVMTDENGKSRGFGFVSFERHEDAQR 246
Query: 316 AIQMGN 321
A+ N
Sbjct: 247 AVDEMN 252
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 231 (86.4 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVY 165
+ +
Sbjct: 127 APF 129
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS 235
G+ + ++++ NWAT + +D SS S
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVS 98
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 226 (84.6 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 54/169 (31%), Positives = 95/169 (56%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KS-SYGFIHYFDR 104
P F ST S+YVG+++ VTE +L E+F++ G V ++ R KS Y +++Y +
Sbjct: 11 PSF--STA-SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNL 67
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV 164
A A+ +LN ++ GQP ++ W++ SG NIFV +L + + LF FS+
Sbjct: 68 ADAERALDTLNYTNIKGQPARLMWSHRDPSLRK-SGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V D+ G+S+ +GFV + +++ A+ AI + G LGS+ +
Sbjct: 127 FGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 175 (66.7 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 59/218 (27%), Positives = 100/218 (45%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KS-SYGFIHYFDR 104
DPS +S ++V N+ + L + FS G + CK+ + KS SYGF+HY D
Sbjct: 95 DPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDE 154
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFS 163
SA AI +NG L + + V +R F N++V + VT+ L F+
Sbjct: 155 ESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGA 222
Y + V D K +R F F+++ + + A++A+++L GK + QI + K
Sbjct: 215 PYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPK-- 269
Query: 223 GNNEDKQSSDAKSVVELTNGSSED--GKETTNTEAPEN 258
+++ ++ T G+ D K N +A +N
Sbjct: 270 ---KEEATASTSGAANQTTGTDADKTDKNDKNNKADKN 304
Score = 119 (46.9 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
L + + R W+ + G GN N DK S D K++ +
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDK-SIDNKALFD 122
Score = 73 (30.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFG 303
+ N E +N Q +Y+ NL + + L F G I +V RD KGFG
Sbjct: 437 DNLNVEN-KNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT--ITSAKVMRDEKEQSKGFG 493
Query: 304 FVRYSTHAEAALAI 317
FV +++ EA A+
Sbjct: 494 FVCFASQEEANKAV 507
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 226 (84.6 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 54/169 (31%), Positives = 95/169 (56%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KS-SYGFIHYFDR 104
P F ST S+YVG+++ VTE +L E+F++ G V ++ R KS Y +++Y +
Sbjct: 11 PSF--STA-SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNL 67
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV 164
A A+ +LN ++ GQP ++ W++ SG NIFV +L + + LF FS+
Sbjct: 68 ADAERALDTLNYTNIKGQPARLMWSHRDPSLRK-SGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V D+ G+S+ +GFV + +++ A+ AI + G LGS+ +
Sbjct: 127 FGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 175 (66.7 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 59/218 (27%), Positives = 100/218 (45%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KS-SYGFIHYFDR 104
DPS +S ++V N+ + L + FS G + CK+ + KS SYGF+HY D
Sbjct: 95 DPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDE 154
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFS 163
SA AI +NG L + + V +R F N++V + VT+ L F+
Sbjct: 155 ESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGA 222
Y + V D K +R F F+++ + + A++A+++L GK + QI + K
Sbjct: 215 PYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPK-- 269
Query: 223 GNNEDKQSSDAKSVVELTNGSSED--GKETTNTEAPEN 258
+++ ++ T G+ D K N +A +N
Sbjct: 270 ---KEEATASTSGAANQTTGTDADKTDKNDKNNKADKN 304
Score = 119 (46.9 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
L + + R W+ + G GN N DK S D K++ +
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDK-SIDNKALFD 122
Score = 73 (30.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFG 303
+ N E +N Q +Y+ NL + + L F G I +V RD KGFG
Sbjct: 437 DNLNVEN-KNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT--ITSAKVMRDEKEQSKGFG 493
Query: 304 FVRYSTHAEAALAI 317
FV +++ EA A+
Sbjct: 494 FVCFASQEEANKAV 507
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 249 (92.7 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 26 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 85
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 86 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 145
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 146 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 204
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 205 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 247
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 248 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 286
Score = 156 (60.0 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + KS +GF+ + A A+ +
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 248 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Score = 132 (51.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 31/107 (28%), Positives = 57/107 (53%)
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
A A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS +
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFG 59
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 60 NILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 104
Score = 79 (32.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 184
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 185 DEMNGKE---LNGKQI 197
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 206 (77.6 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 54/155 (34%), Positives = 83/155 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ + +F S G +E CKL+R DK + YGF++Y D + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR-DKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 113 SLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+LNG L + IKV++A +S D N++V L +T L FS Y +
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 350 NGYRLGDRVLQVSFKT 365
Score = 108 (43.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 42 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136
Score = 80 (33.2 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Score = 71 (30.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +T+ L+++FS G + +++ + GFI + R A AI
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQK 221
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 177 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKT 222
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 202 (76.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 127 (49.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Score = 69 (29.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 202 (76.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 127 (49.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Score = 69 (29.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 249 (92.7 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 156 (60.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 79 (32.9 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 249 (92.7 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 156 (60.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 79 (32.9 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 248 (92.4 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 45 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 104
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 105 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 164
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 165 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 223
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 224 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 266
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 267 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 305
Score = 153 (58.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 266
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 267 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 318
Score = 146 (56.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 33/126 (26%), Positives = 65/126 (51%)
Query: 88 LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 147
+I + Y ++++ A A+ ++N + G+P+++ W+ SG NIF+
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIK 59
Query: 148 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
+L + + L+ FS + + +V+ D+ G S+G+GFV F Q+ A+ AI + G
Sbjct: 60 NLDKSIDNKALYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGML 117
Query: 208 LGSRQI 213
L R++
Sbjct: 118 LNDRKV 123
Score = 77 (32.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 203
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 204 DEMNGKE---LNGKQI 216
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 166 (63.5 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 42/112 (37%), Positives = 61/112 (54%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 122 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 177
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 178 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 229
Score = 125 (49.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 47/186 (25%), Positives = 85/186 (45%)
Query: 44 SGNLPPGF-DPSTCRSVYVGNIHTQVTEPLLQEVFSST-----GPV-EGCKLIRKDK--- 93
+G PPG +P T + + N + + +L +++ S GP+ + + R D
Sbjct: 227 NGQKPPGATEPITVK--FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 284
Query: 94 SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 153
+YG F + + SL G ++ G P W IFV +L+P+
Sbjct: 285 MAYGVKSRFSPMTID-GMTSLAGINIPGHP-GTGWC--------------IFVYNLAPDA 328
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L G LG R +
Sbjct: 329 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 388
Query: 214 RCNWAT 219
+ ++ T
Sbjct: 389 QVSFKT 394
Score = 86 (35.3 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
Score = 77 (32.2 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIH 100
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R + F
Sbjct: 38 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFRE 92
Query: 101 YF 102
YF
Sbjct: 93 YF 94
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
++G G + +A+ ++ NG G T NNP T
Sbjct: 205 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 250
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 248 (92.4 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 82/279 (29%), Positives = 131/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + +VM D G+SRGFGFVSF +DAQ A++D+ GK L + I A K
Sbjct: 210 WFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 211 (79.3 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 48/160 (30%), Positives = 87/160 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI+ + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 146 (56.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 46/174 (26%), Positives = 84/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KS-SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E F G K++ D KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
F+ + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 248 (92.4 bits), Expect = 9.0e-19, P = 9.0e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 248 (92.4 bits), Expect = 9.0e-19, P = 9.0e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 248 (92.4 bits), Expect = 9.0e-19, P = 9.0e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 248 (92.4 bits), Expect = 9.0e-19, P = 9.0e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 248 (92.4 bits), Expect = 9.0e-19, P = 9.0e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 206 (77.6 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 47/160 (29%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H TE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 118 (46.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+ T+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 248 (92.4 bits), Expect = 9.4e-19, P = 9.4e-19
Identities = 80/279 (28%), Positives = 132/279 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 153 (58.9 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 122 (48.0 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 200 (75.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 129 (50.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199
G + IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A A
Sbjct: 282 GGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341
Query: 200 INDLTGKWLGSRQIRCNWAT 219
I L G LG R ++ ++ T
Sbjct: 342 IASLNGYRLGERVLQVSFKT 361
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Score = 67 (28.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 200 (75.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 127 (49.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Score = 67 (28.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 200 (75.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 127 (49.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Score = 67 (28.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 200 (75.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/180 (32%), Positives = 93/180 (51%)
Query: 42 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
+P+G L G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVR-DKITGQSL 80
Query: 96 -YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEV 153
YGF++Y D A AI +LNG L + IKV++A +S D N++V L +
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTM 136
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ + FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 SQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 127 (49.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 204 TGKWLGSRQIRCNWAT 219
G LG R ++ ++ T
Sbjct: 347 NGYRLGERVLQVSFKT 362
Score = 106 (42.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Score = 67 (28.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++ ++++FS G + +++ + GFI + R A AI
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 114 LNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 247 (92.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 80/279 (28%), Positives = 131/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + S+ G + C ++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L G+ + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 208 (78.3 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ LI S+Y ++++ + A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIFV +L + + L+ S + + V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F + A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 157 (60.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 111 (44.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 203 LTGKWLGSRQIRCNWATK 220
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 72 (30.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 242 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 298
G + KE E ++ VY+ N ++ L F G + +V +
Sbjct: 171 GQFKSRKER-EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333
KGFGFV + H +A A+ N + L GKQ+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQI 261
Score = 56 (24.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 300 KGFGFVRYSTHAEAALAIQMGN 321
KG+GFV + TH A AI+ N
Sbjct: 138 KGYGFVHFETHEAAERAIKKMN 159
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 247 (92.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 80/279 (28%), Positives = 130/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y RVM D +G+S+GFGFVSF +DAQ A++++ GK + +Q+ A K
Sbjct: 210 IFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KG----ERQT-------ELKR-KFEQMKQDRMTRY-----QGVNLYVKNLDDGLDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 203 (76.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 53/188 (28%), Positives = 93/188 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+GFV F + A+ AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG-RFKSRKEREAEMGARA 187
Query: 234 KSVVELTN 241
K E TN
Sbjct: 188 K---EFTN 192
Score = 163 (62.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 45/174 (25%), Positives = 87/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP +++ D KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A G+R+ D + N++V +L + D L
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 77 (32.2 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 315
++T VY+ N ++ L F G + +RV D KGFGFV + H +A
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPAL--SIRVMTDDSGKSKGFGFVSFERHEDAQR 246
Query: 316 AIQMGNTTQSSYLFGKQM 333
A+ N + + GKQ+
Sbjct: 247 AVDEMNGKEMN---GKQV 261
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 247 (92.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 85/283 (30%), Positives = 129/283 (45%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFD 103
DPS +S +++ N+ + L E FS+ GP+ CK + D S YGF+ Y
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK-VAVDPSGQSKGYGFVQYDT 182
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---F-NIFVGDLSPEVTDATLF 159
+A AI LNG L + + V + + D SG F N++V +LS ++D L
Sbjct: 183 DEAAQGAIDKLNGMLLNDKQVYVG-PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELN 241
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + +M D + G+S+GFGFV+F N DA A++ L GK ++ W
Sbjct: 242 KVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKE----WFV 296
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
G + ++ ++ K E + + D + +N +YV NL VT L
Sbjct: 297 -GKAQKKSERETELKQKFEQSLKEAADKSQGSN------------LYVKNLDESVTDDKL 343
Query: 280 HRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
HF G I +V RD +G GFV +ST EA AI
Sbjct: 344 REHFAPFGT--ITSCKVMRDPSGVSRGSGFVAFSTPEEATRAI 384
Score = 185 (70.2 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 48/160 (30%), Positives = 80/160 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ VT+ L E F+ G V ++ R + YG+++Y + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
LN L G+ I+V ++ SG NIF+ +L + L FS + +V
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRK-SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D +G+S+G+GFV + + AQ AI+ L G L +Q+
Sbjct: 165 AVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 140 (54.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 43/121 (35%), Positives = 61/121 (50%)
Query: 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFV 188
A A+G + G +++VGDL VTD+ LF F+ RV D T RS G+G+V
Sbjct: 34 AAAAGAAQQ--GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYV 91
Query: 189 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVV 237
++ QDA A+N+L L R IR ++ + G GN N DK S D K++
Sbjct: 92 NYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDK-SIDHKALH 150
Query: 238 E 238
E
Sbjct: 151 E 151
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE-------------- 136
K K +GF+++ + AA A+ +LNG+ + V A +RE
Sbjct: 262 KSKG-FGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEA 320
Query: 137 -DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
D S N++V +L VTD L F+ + + + +VM D +G SRG GFV+F ++
Sbjct: 321 ADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEE 379
Query: 196 AQSAINDLTGKWLGSRQI 213
A AI ++ GK + ++ +
Sbjct: 380 ATRAITEMNGKMIVTKPL 397
Score = 85 (35.0 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAG---VIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++T VYV NL+ ++ +L++ F G VI + KGFGFV + +AA A+
Sbjct: 222 KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281
Query: 318 QM--GNTTQSSYLF-GKQMKCS 336
G T F GK K S
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKS 303
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 226 (84.6 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 61/203 (30%), Positives = 108/203 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S+YVG++H +VTE +L E FS GP+ +L R DK + Y +++Y A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCR-DKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LN + G+P+++ W+ SG N+F+ +L + + L+ FS + + +
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+K G +G+GFV F+ Q+ A+ AI+ + G +L R+I K E ++ +
Sbjct: 121 VACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG-RFKSHKEREAERGAW 177
Query: 233 AKSVVELTNGSSEDGKETTNTEA 255
A+ + T+ +D +E T+ EA
Sbjct: 178 AR---QSTSADVKDFEEDTDEEA 197
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 245 (91.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 80/267 (29%), Positives = 132/267 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + +T L+ +F G + CK++ ++ S +GF+ + +SA A +L+
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 116 GRHLFGQPIKVNWAYASGQREDTSGH---FNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
G ++G+ + V +R +G+ N++V +L VTD L FS Y + S
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
VM D GRSRGFGFV+F N ++A+ A+ L G LGS+++ A K +D++
Sbjct: 233 VMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK-----KDERREM 286
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
K K + N A + N +++ +YV NL+ + + L F G V
Sbjct: 287 LKQ------------KFSDNFIA-KPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSA 333
Query: 293 EVRVQ---RDKGFGFVRYSTHAEAALA 316
+V R KGFGFV +S E+ A
Sbjct: 334 KVMCHENGRSKGFGFVCFSNCEESKQA 360
Score = 182 (69.1 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 56/192 (29%), Positives = 95/192 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSS-YGFIHYFDRRSAAMAILS 113
S+YVG++ VTE L + FS PV L R KS Y +I++ SA+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 114 LNGRHLFGQPIKVNWAYA--SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
LN L G+ +++ W+ + +R +G N++V +L +T + L F + S
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATK----GAGNNE 226
+V+ ++ G+S+GFGFV F +Q A SA + L G + G + + K N+
Sbjct: 142 KVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
Query: 227 DKQSSDAKSVVE 238
D + K+++E
Sbjct: 200 DSTNVYVKNLIE 211
Score = 146 (56.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 48/165 (29%), Positives = 78/165 (47%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VYV N+ VT+ L +FS G V ++R +GF+++ + +A A+ SL
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 115 NGRHLFGQPIKVNWAYASGQREDT-----SGHF---------NIFVGDLSPEVTDATLFA 160
G L + + V A +R + S +F N++V +LS + + L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205
F Y A+VM + GRS+GFGFV F N ++++ A L G
Sbjct: 323 IFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNG 366
Score = 103 (41.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A G + +S +++VGDLSP+VT+ L FS+ + + TG+S + +++F
Sbjct: 10 ALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINF 69
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+ A +A+ L L + +R W+ +
Sbjct: 70 DSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
Score = 93 (37.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 45/146 (30%), Positives = 59/146 (40%)
Query: 205 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET-----TNTE---AP 256
G L + + N +KG G + A S +GS GK+ N + A
Sbjct: 136 GSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAM 195
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYST-- 309
N T VYV NL VT LH F G + V V RD +GFGFV +
Sbjct: 196 AGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT--VSSVVVMRDGMGRSRGFGFVNFCNPE 253
Query: 310 HAEAALAIQMGNTTQSSYLF-GKQMK 334
+A+ A+ G S LF GK +K
Sbjct: 254 NAKKAMESLCGLQLGSKKLFVGKALK 279
Score = 77 (32.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+ +YV NL +T L R F G+ V+EE + KGFGFV++ T A A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENG--QSKGFGFVQFDTEQSAVSA- 167
Query: 318 QMGNTTQSSYLFGKQM 333
+ S ++GK++
Sbjct: 168 --RSALHGSMVYGKKL 181
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 246 (91.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 77/278 (27%), Positives = 129/278 (46%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A+ ++ GK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 215 (80.7 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 59/189 (31%), Positives = 97/189 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ C+ I +S Y +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ G SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 130 VVCDEY-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTN 241
AK V+E TN
Sbjct: 185 AK-VMEFTN 192
Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 42/174 (24%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ + +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + + +VM + G S+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 225 (84.3 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 57/172 (33%), Positives = 97/172 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVA 173
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 225 (84.3 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 57/172 (33%), Positives = 97/172 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 225 (84.3 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 57/172 (33%), Positives = 97/172 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 225 (84.3 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 57/172 (33%), Positives = 97/172 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 245 (91.3 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 82/278 (29%), Positives = 127/278 (45%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ D S +GF+H+ +
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F NI+V +L +V + L
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SRGFGFV+F +DAQ A+ D+ GK + R + A K
Sbjct: 211 FSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q+ EL E K+ T Q +YV NL + L +
Sbjct: 270 V----ERQN-------ELKR-RFEQMKQDRLTRY-----QGVNLYVKNLDDSIDDEKLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 223 (83.6 bits), Expect = 9.5e-16, P = 9.5e-16
Identities = 57/170 (33%), Positives = 92/170 (54%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDR 104
PG+ P S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++
Sbjct: 6 PGY-PLA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
A A+ ++N + GQPI++ W+ G R+ SG N+F+ +L + + L+ FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRK--SGVGNVFIKNLEDSIDNKALYDTFS 120
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V+ D G SRGFGFV F + AQ+AI + G L R++
Sbjct: 121 TFGNILSCKVVCDDH-G-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Score = 184 (69.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 47/174 (27%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
++YV N+H V E LQ++FS G + K++R D +GF+++ A A+ +
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
F+ Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ +
Sbjct: 312 KEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 126 (49.4 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + + + IR W+ + G
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPG 92
Score = 62 (26.9 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMG 320
V++ NL + L+ F + G I +V D +GFGFV + TH A AI+
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGN--ILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 321 N 321
N
Sbjct: 159 N 159
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 245 (91.3 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 77/278 (27%), Positives = 128/278 (46%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S +GF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 151 ATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D TGRS+GFGFV+F ++AQ A+ D+ GK + R + A K
Sbjct: 211 FSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++QS EL + +E + Q +YV NL + L +
Sbjct: 270 L----ERQS-------ELKRKFEQMKQERVSRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 212 (79.7 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 54/170 (31%), Positives = 91/170 (53%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDR 104
PG+ P S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++
Sbjct: 6 PGY-PLA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQP 62
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
A A+ ++N + G+P+++ W+ G R+ SG N+F+ +L + + L+ FS
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFS 120
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V+ D+ G SRG GFV F Q+ A AI + G L R++
Sbjct: 121 AFGNILSCKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKV 168
Score = 146 (56.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 42/174 (24%), Positives = 84/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS G K++ +GF+++ A A+ +
Sbjct: 192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
NG+ + G+ + V A + ++E S + N++V +L + D L
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 125 (49.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D + RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + + R +R W+ + G
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPG 92
Score = 53 (23.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321
V++ NL + L+ F + G + +V + +G GFV + T A AIQ N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMN 159
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 224 (83.9 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 60/203 (29%), Positives = 108/203 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S+YVG++H +VTE +L E FS GP+ ++ R DK + Y +++Y A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICR-DKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LN + G+P+++ W+ SG N+F+ +L + + L+ FS + + +
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+K G +G+GFV F+ Q+ A+ AI+ + G +L R+I K E ++ +
Sbjct: 121 VACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG-RFKSHKEREAERGAW 177
Query: 233 AKSVVELTNGSSEDGKETTNTEA 255
A+ + T+ +D +E T+ EA
Sbjct: 178 AR---QSTSADVKDFEEDTDEEA 197
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 224 (83.9 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 60/203 (29%), Positives = 108/203 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S+YVG++H +VTE +L E FS GP+ ++ R DK + Y +++Y A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICR-DKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LN + G+P+++ W+ SG N+F+ +L + + L+ FS + + +
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+K G +G+GFV F+ Q+ A+ AI+ + G +L R+I K E ++ +
Sbjct: 121 VACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG-RFKSHKEREAERGAW 177
Query: 233 AKSVVELTNGSSEDGKETTNTEA 255
A+ + T+ +D +E T+ EA
Sbjct: 178 AR---QSTSADVKDFEEDTDEEA 197
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 214 (80.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 51/184 (27%), Positives = 96/184 (52%)
Query: 35 AAPQIEPIPSG-NLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK 93
A Q P P+ PP S S+Y+G++H V+E +L E FS GPV ++ R +
Sbjct: 35 AVIQQGPPPTNIGYPPNATYSMA-SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNT 93
Query: 94 S----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDL 149
S Y ++++ A A+ ++N + G+P+++ W+ +G+ NIF+ +L
Sbjct: 94 SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAAR-RAGNGNIFIKNL 152
Query: 150 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209
+ + +++ FS++ + +V D + G S+G+GFV F + AQ+AI + G L
Sbjct: 153 DRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLS 211
Query: 210 SRQI 213
+++
Sbjct: 212 DKKV 215
Score = 203 (76.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 74/281 (26%), Positives = 118/281 (41%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDR 104
DP+ R+ +++ N+ + + + FS G + CK+ D+ + YGF+H+
Sbjct: 136 DPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETE 195
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLF 159
SA AI +NG L + + V QR G + N+FV + + L
Sbjct: 196 HSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLS 255
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
A FS + + A VM D + G+ +GFGFV+F +Q A A+ L L C +
Sbjct: 256 AMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTD--CKLSV 312
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
A + ++S++ K E + N +YV N+ ++ L
Sbjct: 313 CRA-QKKSERSAELKRKYEALKQERVQRYQGVN------------LYVKNIEEDLNDDGL 359
Query: 280 HRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
HF S G +V V R KGFGFV + EA A+
Sbjct: 360 RDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 400
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 41/169 (24%), Positives = 76/169 (44%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG--------------- 140
+GF+ + D+ +A A+ LN L G K++ A + E ++
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQR 339
Query: 141 --HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198
N++V ++ ++ D L FS + + + A+VM D+ GRS+GFGFV F ++A +
Sbjct: 340 YQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATA 398
Query: 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG 247
A+ D+ K +G++ + A + S + + L G G
Sbjct: 399 AVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASG 447
Score = 117 (46.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++++GDL P+V++A LF FS+ RV D + S G+ +V+F+ DA+ A++
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 203 LTGKWLGSRQIRCNW-----ATKGAGN 224
+ + + R +R W A + AGN
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGN 144
Score = 76 (31.8 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 26/86 (30%), Positives = 37/86 (43%)
Query: 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTH 310
E E+ +YT V+V N + Q L F G + V+ + KGFGFV ++
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 311 AEAALAIQMGNTTQSSYLFGKQMKCS 336
A A++ N S L G K S
Sbjct: 289 DAAGQAVEKLN---DSILEGTDCKLS 311
Score = 50 (22.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 300 KGFGFVRYSTHAEAALAIQMGN 321
KG+GFV + T A AI+ N
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVN 206
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 223 (83.6 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 60/203 (29%), Positives = 108/203 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S+YVG++H +VTE +L E FS GP+ ++ R DK + Y +++Y A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICR-DKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LN + G+P+++ W+ SG N+F+ +L + + L+ FS + + +
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+K G +G+GFV F+ Q+ A+ AI+ + G +L R+I K E ++ +
Sbjct: 121 VACDEK-G-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG-RFKSHKEREAERGAW 177
Query: 233 AKSVVELTNGSSEDGKETTNTEA 255
A+ + T+ +D +E T+ EA
Sbjct: 178 AR---QSTSADVKDFEEDTDEEA 197
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 236 (88.1 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 78/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y +VM D G+S+GFGFVSF +DAQ A++++ GK + + + A K
Sbjct: 210 MFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 211 (79.3 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 48/160 (30%), Positives = 87/160 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI+ + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 44/174 (25%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ D KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
F + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 117 (46.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + R +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAV 248
Query: 318 -QM-GNTTQSSYLF-GKQMK 334
+M G +F G+ K
Sbjct: 249 DEMNGKDMNGKSMFVGRAQK 268
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 200 (75.5 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 52/154 (33%), Positives = 83/154 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +++ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S D+ N+++ L +T + F Y ++R
Sbjct: 94 TLNGLRLQSKTIKVSYARPSS---DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSR 150
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
V+ DQ +G SRG F+ F + +A+ AI DL G+
Sbjct: 151 VLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 111 (44.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
N+ V L ++ L + FS A+++ D+ G S G+GFV++ N DA+ AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 203 LTGKWLGSRQIRCNWATKGAGNNED 227
L G L S+ I+ ++A + + +D
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKD 119
Score = 105 (42.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 22/83 (26%), Positives = 47/83 (56%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
++S + IF+ +L + + L+ F + + ++ +V+ D T + +GFGFV+ + ++A
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEA 312
Query: 197 QSAINDLTGKWLGSRQIRCNWAT 219
AI L G LG + ++ ++ T
Sbjct: 313 AMAIASLNGYRLGDKILQVSFKT 335
Score = 76 (31.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N+ +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 246 SGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 305
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 306 MTHYEEAAMAI 316
Score = 61 (26.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS--SYG--FIHYFDR 104
P D ++Y+ + +T+ ++E+F G + +++ S S G FI + R
Sbjct: 112 PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKR 171
Query: 105 RSAAMAILSLNGRHLFG--QPIKVNWAYASGQREDT 138
A AI LNG+ G + + V +A + Q ++T
Sbjct: 172 AEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNT 207
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 236 (88.1 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 77/270 (28%), Positives = 127/270 (47%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYS 308
+ F G +V ++ R KGFGFV +S
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Score = 210 (79.0 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P+++ W+ SG NIF+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 131 VCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 318 QMGNTTQSSYLFGKQM 333
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 219 (82.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 52/182 (28%), Positives = 92/182 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + F++ G + CK+ + + + YGF+HY +A+ AI +
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 115 NGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V R+ + +F NI+V +++PEVTD F Y +
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
+ + DQ+TG+SRGFGFV+F + +DA A+ +L K + + A K E+ +
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Query: 230 SS 231
S
Sbjct: 330 KS 331
Score = 191 (72.3 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 47/177 (26%), Positives = 81/177 (45%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSY 96
P PS P P S+YVG + VTE +L E+FS G V ++ R + Y
Sbjct: 48 PTPSSAAP---HPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGY 104
Query: 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDA 156
+++Y A+ LN + G+P ++ W+ T G N+F+ +L + +
Sbjct: 105 AYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKT-GQGNVFIKNLDVAIDNK 163
Query: 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
L F+ + + +V D+ G S+G+GFV + + A AI + G L +++
Sbjct: 164 ALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219
Score = 127 (49.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VG+L P VT+A LF FS S + RV D T RS G+ +V++ D + A+ +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 203 LTGKWLGSRQIRCNWATK 220
L + R R W+ +
Sbjct: 122 LNYTLIKGRPCRIMWSQR 139
Score = 102 (41.0 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 248 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFG 303
K+ ++ E +T +YV N+ PEVT + F G + + + + +GFG
Sbjct: 227 KKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Query: 304 FVRYSTHAEAALAIQ 318
FV +++H +A+ A+Q
Sbjct: 287 FVNFTSHEDASKAVQ 301
Score = 96 (38.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSV 236
K G+S+GFGFV F N DA A+ ++ + + ++ + A K N+ +QS A++
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQ 487
Query: 237 VELTNGSSEDGKETTNTEAP 256
+ + ++ G +AP
Sbjct: 488 LRMQQAAAAAGMPQQYMQAP 507
Score = 79 (32.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA-------------YASGQREDTSGH- 141
+GF+++ A+ A+ LN + GQ + V A Y + ++E S +
Sbjct: 285 FGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQ 344
Query: 142 -FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 179
N+++ +L EV D L FS + + A+VM D T
Sbjct: 345 GVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 64 (27.6 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQM 319
V++ NL + LH F + G I +V +D KG+GFV Y T A+ AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGN--ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKH 208
Query: 320 GN 321
N
Sbjct: 209 VN 210
Score = 44 (20.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 295 RVQRDKGFGFVRYSTHAEAALAI 317
++ + KGFGFV ++ +A A+
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAV 450
Score = 43 (20.2 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299
Q +Y+ NL EV L + F G I +V RD
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGP--ITSAKVMRD 380
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 203 (76.5 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 70/219 (31%), Positives = 108/219 (49%)
Query: 30 HPGLLAAPQ-IEPIPSGNLPP-GFDPSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGC 86
H G + Q + +P+G P G +PS ++ + N Q +++ L+ +FSS G VE
Sbjct: 26 HKGASSIKQEVYDMPNGYEDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESA 85
Query: 87 KLIRKDKSS-------------YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133
KLIR DK + YGF++Y + A AI +LNG L + IKV++A S
Sbjct: 86 KLIR-DKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSS 144
Query: 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193
D N+++ L +T + F+ Y ++R++ DQ +G SRG F+ F +
Sbjct: 145 ---DGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKR 201
Query: 194 QDAQSAINDLTG-KWLG-SRQIRCNWATKGAGNNEDKQS 230
+A+ AI DL G K G S I +A A N+ K S
Sbjct: 202 SEAEEAIKDLNGSKPSGASEPITVKFA---ANPNQSKNS 237
Score = 114 (45.2 bits), Expect = 0.00081, P = 0.00081
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 123 PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 181
P+ V+ + +S +S + IFV +L + + L+ F + + ++ +V+ D T +
Sbjct: 266 PMSVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 182 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217
+GFGFV+ N ++A AI+ L G LG + ++ ++
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSF 361
Score = 74 (31.1 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320
++V NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 321 N 321
N
Sbjct: 348 N 348
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 220 (82.5 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 56/172 (32%), Positives = 96/172 (55%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG + +R + A
Sbjct: 123 CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 191 (72.3 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 63/203 (31%), Positives = 96/203 (47%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRS 106
DP T ++ V + +++ ++ +F S G VE CKLIR DK + YGF++Y +
Sbjct: 107 DPKT--NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIR-DKVTGQSLGYGFVNYVKQED 163
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
A AI +LNG L + IKV+ A S E G N++V L +T + L + FS Y
Sbjct: 164 AEKAINALNGLRLQNKTIKVSIARPSS--ESIKGA-NLYVSGLPKNMTQSDLESLFSPYG 220
Query: 167 SCSDARVMWDQKTGR-----SRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWAT 219
+R++ D TG S+G GF+ F + +A AI +L G + I +A
Sbjct: 221 KIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFAN 280
Query: 220 KGAGNNEDKQSSDAKSVVELTNG 242
+ N Q A + T G
Sbjct: 281 NPSSNKNSMQPLAAYIAPQNTRG 303
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IFV +L+P+ + L+ F + + +V+ D ++ + +GFGFV+ N ++A AI L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQS 230
G LG+R ++ ++ T N++KQ+
Sbjct: 423 NGYTLGNRVLQVSFKT-----NKNKQT 444
Score = 92 (37.4 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 35/103 (33%), Positives = 48/103 (46%)
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
N + SS LT+ +G NT A ++V NLAP+ + L + F
Sbjct: 327 NAGRYSSVISRYSPLTSDLITNGMIQGNTIASSG----WCIFVYNLAPDTEENVLWQLFG 382
Query: 285 SLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGN 321
GA ++ V+V RD KGFGFV + + EA LAIQ N
Sbjct: 383 PFGA--VQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLN 423
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 193 (73.0 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 59/180 (32%), Positives = 92/180 (51%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ S N G + ++ V + +T+ + +F S G +E CKL+R DK +
Sbjct: 25 PVISTN---GATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR-DKITGQSLG 80
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D A AI +LNG L + IKV++A +S D N++V L ++
Sbjct: 81 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMS 136
Query: 155 DATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 212
+ FS Y +R++ DQ T G SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 137 QKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAE 196
Score = 128 (50.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197
T + IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 198 SAINDLTGKWLGSRQIRCNWAT 219
AI L G LG R ++ ++ T
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKT 353
Score = 105 (42.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 30 NGATDDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 87
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 88 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 123
Score = 84 (34.6 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 334
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++YV + +++ ++++FS G + +++ ++ GFI + R A AI
Sbjct: 125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184
Query: 113 SLNGRHLFG--QPIKVNWAYASGQR 135
LNG+ G +PI V +A Q+
Sbjct: 185 GLNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 219 (82.2 bits), Expect = 9.1e-18, P = 9.1e-18
Identities = 61/172 (35%), Positives = 91/172 (52%)
Query: 41 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----- 95
P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R DK +
Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR-DKITGQSLG 81
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVT 154
YGF++Y D + A AI +LNG L + IKV++A +S D N++V L +T
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMT 137
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L FS Y +R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 219 (82.2 bits), Expect = 9.1e-18, P = 9.1e-18
Identities = 52/161 (32%), Positives = 90/161 (55%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
S+YVG++H +VTE +L E FS GP+ +L R DK + Y +++Y A A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCR-DKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
++N + G+P+++ W+ SG N+F+ +L + + L+ FS + + +
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLRK-SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
V D+K G +G+GFV F+ Q+ A+ AI+ L G +L R+I
Sbjct: 121 VACDEK-G-PKGYGFVHFQKQESAERAIDALNGMFLNYRKI 159
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL PEVT++ L+ FS R+ D+ T RS G+ +V+++ DA+ A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 203 LTGKWLGSRQIRCNWATK 220
+ + R +R W+ +
Sbjct: 63 MNFDVINGRPVRIMWSQR 80
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 194 (73.4 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F NI++ ++ PEV D F + +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + D + G+SRGFGFV+F + AQ+A+ ++ K + S+++ A K E+
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 228 KQSSDAK 234
KQ A+
Sbjct: 310 KQYEAAR 316
Score = 187 (70.9 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/187 (25%), Positives = 87/187 (46%)
Query: 31 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR 90
P AP++ + + P S+YVG + VTE +L E+FSS G V ++ R
Sbjct: 19 PDNAPAPEVTAVEA---PATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 91 ----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFV 146
+ Y +++Y D A+ LN + G+P ++ W+ T G N+F+
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFI 134
Query: 147 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
+L + + L F+ + + +V D+ G S+G+GFV + + A +AI + G
Sbjct: 135 KNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGM 193
Query: 207 WLGSRQI 213
L +++
Sbjct: 194 LLNDKKV 200
Score = 111 (44.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ + + A+++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 203 LTGKWLGSRQIRCNWATK 220
L + + R W+ +
Sbjct: 103 LNYTLIKGKPCRIMWSQR 120
Score = 102 (41.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 248 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGF 302
K+ ++ E +T +Y+ N+ PEV + + F G I + RD +GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE--ITSATLSRDSEGKSRGF 265
Query: 303 GFVRYSTHAEAALAIQMGNTTQ--SSYLF-GKQMK 334
GFV +STH A A++ N + S L+ G+ K
Sbjct: 266 GFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Score = 63 (27.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAA 314
V++ NL + LH F + G I +V +D KG+GFV Y T AEAA
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGN--ILSCKVAQDEFGVSKGYGFVHYET-AEAA 183
Score = 52 (23.4 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 292 EEVRVQRDKGFGFVRYSTHAEAALAI 317
E+ + + KGFGFV +S+ EA+ A+
Sbjct: 409 EKKPLGKSKGFGFVCFSSPDEASKAV 434
Score = 42 (19.8 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 260
TK + N E++++++ + E+ KE + PE P
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAE--QKPEKKP 412
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 233 (87.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 57/189 (30%), Positives = 99/189 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++YVG + +V+E +L E+ GPV + + + +GF+ + A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-R 172
LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+M D +G S+GF F++F + + + +A+ + G++L +R I ++A K E + +
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE-RHGTA 190
Query: 233 AKSVVELTN 241
A+ ++ N
Sbjct: 191 AERMLAAQN 199
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 233 (87.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 57/189 (30%), Positives = 99/189 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++YVG + +V+E +L E+ GPV + + + +GF+ + A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-R 172
LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+M D +G S+GF F++F + + + +A+ + G++L +R I ++A K E + +
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE-RHGTA 190
Query: 233 AKSVVELTN 241
A+ ++ N
Sbjct: 191 AERMLAAQN 199
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 238 (88.8 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 81/283 (28%), Positives = 128/283 (45%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS RS V++ N++ + L + FS+ G + CK++ + S +GF+H+
Sbjct: 90 DPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + + D TL
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNG 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ G+S+GFGFVSF +DAQ A++++ GK L + I A K
Sbjct: 210 LFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
D+ +EL K T+ Q +YV NL + L
Sbjct: 269 KV----DRH-------IELKR------KFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V + R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMN 354
Score = 201 (75.8 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 49/167 (29%), Positives = 89/167 (53%)
Query: 52 DPST-CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGF--IHYFDRRS 106
DP S+YVG++H VTE +L E FSS GP+ ++ R + S G+ +++
Sbjct: 5 DPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPAD 64
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
A A+ ++N + G+P+++ W+ SG N+F+ +L+ + + L+ FS +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLR-RSGVGNVFIKNLNKTIDNKALYDTFSAFG 123
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V+ D+ G S+G GFV F ++ A+ AI + G L R++
Sbjct: 124 NILSCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Score = 137 (53.3 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 44/174 (25%), Positives = 84/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N ++ + L +F G V K++ + KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQR------------EDTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A R +D + N++V +L + D L
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + +VM + GRS+GFGFV F + ++A A++++ G+ + ++ +
Sbjct: 312 KEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPL 363
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 224 (83.9 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 76/280 (27%), Positives = 126/280 (45%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F N+++ + ++ L
Sbjct: 151 ANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
F+ + VM D++ GRSRGFGFV+F N DA+ A+ ++ GK L R + A K
Sbjct: 211 FTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E Q +YV NL + L +
Sbjct: 270 L----ERQG-------ELKRKFEQIKQERIQRY------QGVNLYVKNLDDSIDDEKLRK 312
Query: 282 HFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 317
F G I +V D +GFGFV +S+ EA A+
Sbjct: 313 EFAPYGT--ITSAKVMTDGGHSRGFGFVCFSSPEEATKAV 350
Score = 210 (79.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 59/206 (28%), Positives = 105/206 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L + FS G + C+ +I + Y +I++ A A+ +
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG NIF+ ++ + + L+ FS + + +
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRK--SGVGNIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ G S+G+GFV F Q+ A AI + G L R++ + E +
Sbjct: 130 VVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV---FVGHFKSRKEREAEMG 184
Query: 233 AKSVVELTNGSSEDGKETTNTEAPEN 258
AK+V E TN ++ E ++E +N
Sbjct: 185 AKAV-EFTNVYIKNFGEDIDSEKLKN 209
Score = 147 (56.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 43/174 (24%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI-RKDKS-SYGFIHYFDRRSAAMAILSL 114
+VY+ N + L+ +F+ G + C + + +S +GF+++ + A A+ +
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
F+ Y + + A+VM D G SRGFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 312 KEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Score = 72 (30.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + V R +GFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAV 248
Query: 318 -QM-GNTTQSSYLF-GKQMK 334
+M G L+ G+ K
Sbjct: 249 TEMNGKELNGRVLYVGRAQK 268
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 228 (85.3 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 77/279 (27%), Positives = 125/279 (44%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 91 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQD 150
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 151 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKE 210
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y +VM D TG+SRGFGFVS+ +DA A+ ++ G L N T
Sbjct: 211 LFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTEL-------NGKTV 262
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
G + K A EL + +E + Q +Y+ NL + L
Sbjct: 263 FVGRAQKKMERQA----ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 312
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 313 KEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAV 351
Score = 201 (75.8 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 54/188 (28%), Positives = 92/188 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H +TE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q A AI + G L R++ K E + + A
Sbjct: 132 VCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG-RFKSRKEREAEMGAKA 188
Query: 234 KSVVELTN 241
K E TN
Sbjct: 189 K---EFTN 193
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 47/174 (27%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KS-SYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F G K++ KS +GF+ Y A A+ +
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG L G+ + V A +R+ + F N+++ +L + D L
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM ++ GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 313 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Score = 122 (48.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 36/115 (31%), Positives = 60/115 (52%)
Query: 138 TSGHF---NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 194
T+G + +++VGDL P++T+A L+ FS RV D T RS G+ +V+F+
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 195 DAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
DA+ A++ + + + IR W+ + G GN N DK S D K++ +
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 118
Score = 81 (33.6 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + +GFGFV Y H +A A+
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAV 249
Query: 318 QMGNTTQ 324
+ N T+
Sbjct: 250 EEMNGTE 256
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 193 (73.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 59/178 (33%), Positives = 94/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRSMTQKDVEDMFSRFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI + G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 118 (46.6 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AIN L G L S+ I+ ++A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 214 (80.4 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 57/149 (38%), Positives = 83/149 (55%)
Query: 170 DARVMWDQKTGRSRGFGFVSF-RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228
DARV+ D TG+S+G+G VSF N+ DA++AI + G+WLG RQI+ +WAT+ +
Sbjct: 2 DARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKST 61
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
Q ++ K + ED N + +N TVY G +A +T + + F G
Sbjct: 62 QENNTKQL------KFED---VVNQSSSKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 108
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
I E+RV +K + FVR+STH AA AI
Sbjct: 109 --IMEIRVFPEKRYSFVRFSTHGSAAHAI 135
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 316
+++ + TVY G +A +T + + F G I E+RV +K + FVR+STH AA A
Sbjct: 77 QSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKRYSFVRFSTHGSAAHA 134
Query: 317 I-QMGNTTQSSYLFGKQMKCSWGSK 340
I + TT + G+ +KC WG +
Sbjct: 135 IVSVTGTT----IEGRVVKCYWGKE 155
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 214 (80.4 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 55/172 (31%), Positives = 95/172 (55%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ D TG S+G+GFV F ++ + + A+ + G LG + +R + A
Sbjct: 123 CRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 192 (72.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRNMTQKDVEDMFSRFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 118 (46.6 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AIN L G L S+ I+ ++A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 192 (72.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AI+ L G L S+ I+ ++A
Sbjct: 75 ERAISTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 192 (72.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AI+ L G L S+ I+ ++A
Sbjct: 75 ERAISTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 230 (86.0 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 76/279 (27%), Positives = 130/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D +L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 207 (77.9 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 59/210 (28%), Positives = 103/210 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q+ A AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELGAKA 187
Query: 234 KSVVELTNGSSED-GKETTNTEAPENNPQY 262
K E TN ++ G+E + E Q+
Sbjct: 188 K---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 176 (67.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 43 (20.2 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGAVAAA 629
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 229 (85.7 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 19 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 78
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D L
Sbjct: 79 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 138
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 139 LFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 197
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 198 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 240
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 241 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 279
Score = 176 (67.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 241 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 292
Score = 43 (20.2 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 568 QAHHAKKEAAQKVGTVAAA 586
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 191 (72.3 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 115 (45.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199
G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 200 INDLTGKWLGSRQIRCNWA 218
IN L G L S+ I+ ++A
Sbjct: 78 INTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 226 (84.6 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 52/173 (30%), Positives = 93/173 (53%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
+VY+GN+ +V++ L+ E+ G + L + + YGF+ + A A
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+NG L+G+PI+VN A A Q+ G +FVG+L P VT+ L+ FS + + +
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGA-ELFVGNLDPMVTEQVLYDTFSRFGNLVNLPK 132
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
+ + S+G+GFVSF + + + +AI ++ G++L ++Q+ +A K G E
Sbjct: 133 VARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGE 185
Score = 122 (48.0 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSL 114
++VGN+ VTE +L + FS G + + +D S+ YGF+ + D S+ AI ++
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSG 140
NG++L + + V +AY + + G
Sbjct: 163 NGQYLMNKQVSVQYAYKKDGKGERHG 188
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 191 (72.3 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSR 144
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 145 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 199
Score = 118 (46.6 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 23 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 82
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AIN L G L S+ I+ ++A
Sbjct: 83 ERAINTLNGLRLQSKTIKVSYA 104
Score = 75 (31.5 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 240 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 299
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 300 MTNYEEAAMAI 310
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 229 (85.7 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 207 (77.9 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 59/210 (28%), Positives = 103/210 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q+ A AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELGAKA 187
Query: 234 KSVVELTNGSSED-GKETTNTEAPENNPQY 262
K E TN ++ G+E + E Q+
Sbjct: 188 K---EFTNVYIKNFGEEVDDENLKELFSQF 214
Score = 175 (66.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 43 (20.2 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGAVAAA 629
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 230 (86.0 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 76/279 (27%), Positives = 130/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 130 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 189
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D +L
Sbjct: 190 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 249
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 250 LFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 308
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 309 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 351
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 352 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 390
Score = 176 (67.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 351
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 352 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Score = 127 (49.8 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 41/158 (25%), Positives = 74/158 (46%)
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY 165
+A A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS +
Sbjct: 104 TAERALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAF 162
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 225
+ +V+ D+ G S+G+ FV F Q+ A AI + G L R++ K
Sbjct: 163 GNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKER 219
Query: 226 EDKQSSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 262
E + + AK E TN ++ G+E + E Q+
Sbjct: 220 EAELGAKAK---EFTNVYIKNFGEEVDDESLKELFSQF 254
Score = 43 (20.2 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 680 QAHHAKKEAAQKVGAVAAA 698
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 232 (86.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQD 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + ++ D L
Sbjct: 150 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS Y +VM D TG+S+GFGFVSF +DA A+ ++ GK + + + A K
Sbjct: 210 LFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRRFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 201 (75.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D+ G S+G+ FV F Q A AI + G L R++
Sbjct: 131 VCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 158 (60.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS G K++ KS +GF+ + A A+ +
Sbjct: 192 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 123 (48.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 238
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 74 (31.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAV 248
Query: 318 QMGN 321
+ N
Sbjct: 249 EEMN 252
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 228 (85.3 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D +L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 207 (77.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 59/210 (28%), Positives = 103/210 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q+ A AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELGAKA 187
Query: 234 KSVVELTNGSSED-GKETTNTEAPENNPQY 262
K E TN ++ G+E + E Q+
Sbjct: 188 K---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 175 (66.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 43 (20.2 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 595 QAHHAKKEAAQKVGAVAAA 613
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 153 (58.9 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTD 155
YGF++Y A A+ +LNG L + IKV++A S E G N++V L ++
Sbjct: 87 YGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSS--ESIKGA-NLYVSGLPKNLSQ 143
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
L F+ + +R++ D +G S+G GF+ F + +A+ AI +L GK
Sbjct: 144 PDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 125 (49.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197
T + IFV +L+PE + L+ F + + +V+ D +T + +GFGFV+ N +A
Sbjct: 269 TGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAV 328
Query: 198 SAINDLTGKWLGSRQIRCNWAT 219
AI L G LG+R ++ ++ T
Sbjct: 329 VAIQSLNGYTLGNRVLQVSFKT 350
Score = 91 (37.1 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320
++V NLAPE + L + F GA VI +++ + KGFGFV + + EA +AIQ
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 321 N 321
N
Sbjct: 335 N 335
Score = 80 (33.2 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 180 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
G+S G+GFV++ +DA+ A+N L G L ++ I+ ++A
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYA 120
Score = 78 (32.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAILS 113
++YV + +++P L+ +F+S G + +++ + S GFI + R A AI
Sbjct: 131 NLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQE 190
Query: 114 LNGRHLFG--QPIKVNWA 129
LNG+ G +PI V +A
Sbjct: 191 LNGKTPKGYAEPITVKFA 208
Score = 64 (27.6 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS 95
G + + ++ V + +T+ ++ +FSS G +E CKL+R DK S
Sbjct: 19 GSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVR-DKVS 63
Score = 53 (23.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 205 GKWLGSRQIRCN---WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 261
GK + SR I C+ +KG G Q ++A+ ++ NG + G T NNP
Sbjct: 154 GKIITSR-ILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPS 212
Query: 262 YTTVYVGNLAPEVT 275
+ +AP +T
Sbjct: 213 NSAK--AQIAPPLT 224
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 231 (86.4 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 57/161 (35%), Positives = 88/161 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
V D+ G SRGFGFV F + AQ AIN + G L R++
Sbjct: 130 VACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 209 (78.6 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 74/278 (26%), Positives = 123/278 (44%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK+ + S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F NI+V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q+ EL + ++ Q +YV NL + L +
Sbjct: 270 V----ERQN-------ELKRRFEQMKQDRLRRY------QGVNLYVKNLDDSIDDDKLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 162 (62.1 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 45/174 (25%), Positives = 87/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++YV N+ V E LQ++FS G + K++R + +GF+++ A A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 130 (50.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + L + IR W+ + G
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPG 92
Score = 63 (27.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 321
+++ NL + L+ F + G + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMN 159
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 228 (85.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D +L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 207 (77.9 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 59/210 (28%), Positives = 103/210 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q+ A AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELGAKA 187
Query: 234 KSVVELTNGSSED-GKETTNTEAPENNPQY 262
K E TN ++ G+E + E Q+
Sbjct: 188 K---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 175 (66.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 43 (20.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 624 QAHHAKKEAAQKVGAVAAA 642
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 191 (72.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + A AI
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSR 163
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 164 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 218
Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199
G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA+ A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 200 INDLTGKWLGSRQIRCNWA 218
IN L G L S+ I+ ++A
Sbjct: 105 INTLNGLRLQSKTIKVSYA 123
Score = 75 (31.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 259 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 318
Query: 307 YSTHAEAALAI 317
+ + EAA+AI
Sbjct: 319 MTNYEEAAMAI 329
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 191 (72.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 58/178 (32%), Positives = 93/178 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G +E KLIR DK + YGF++Y + A AI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIR-DKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + + N+++ L +T + FS + ++R
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSPFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 119 (46.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWA 218
+ AIN L G L S+ I+ ++A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA 96
Score = 72 (30.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 306
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 307 YSTHAEAALAI 317
+ + EA++AI
Sbjct: 292 MTNYEEASMAI 302
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 225 (84.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 72/269 (26%), Positives = 125/269 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L + FS+ G + CK++ + S Y F+H+ + +A AI +N
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 61
Query: 116 GRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSVYPSCSD 170
G L + + V + +RE G F N+++ + EV D +L FS +
Sbjct: 62 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 121
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K ++Q+
Sbjct: 122 VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV----ERQA 176
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
EL + +E + Q +Y+ NL + L + F G+
Sbjct: 177 -------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 223
Query: 291 IEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+V ++ R KGFGFV +S+ EA A+
Sbjct: 224 SAKVMLEDGRSKGFGFVCFSSPEEATKAV 252
Score = 175 (66.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 94 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 213
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 214 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 265
Score = 43 (20.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 530 QAHHAKKEAAQKVGAVAAA 548
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 227 (85.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 76/279 (27%), Positives = 129/279 (46%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G F N+++ + EV D L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ F G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 207 (77.9 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 59/210 (28%), Positives = 103/210 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+PI++ W+ SG N+F+ +L + + L+ FS + + +V
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D+ G S+G+ FV F Q+ A AI + G L R++ K E + + A
Sbjct: 131 VCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELGAKA 187
Query: 234 KSVVELTNGSSED-GKETTNTEAPENNPQY 262
K E TN ++ G+E + E Q+
Sbjct: 188 K---EFTNVYIKNFGEEVDDENLKELFSQF 214
Score = 175 (66.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R KS +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N+++ +L + D L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ +
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 389 QAQHPLKQAAMGVGSAGAS 407
QA H K+AA VG+ A+
Sbjct: 625 QAHHAKKEAAQKVGAVAAA 643
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 206 (77.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 61/196 (31%), Positives = 94/196 (47%)
Query: 49 PGFDPSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYF 102
P D ++ + N Q +T+ ++ +F+S G +E CKL+R DK + YGF++Y
Sbjct: 33 PNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVR-DKVTGQSLGYGFVNYV 91
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF 162
A A+ S NG L + IKV+ YA + G N++V + +T L + F
Sbjct: 92 REEDALRAVSSFNGLRLQNKTIKVS--YARPSNDQIKGS-NLYVSGIPKSMTLHELESIF 148
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATK 220
+ +R++ D TG S+G GFV F + +A AI L G S QI +A
Sbjct: 149 RPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANN 208
Query: 221 GAGNNEDKQSSDAKSV 236
A NN SD ++V
Sbjct: 209 PASNNPKGLLSDLEAV 224
Score = 103 (41.3 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 29/127 (22%), Positives = 62/127 (48%)
Query: 110 AILSLNGRHLFGQPIKVNWA----YASGQREDTS-GHFNIFVGDLSPEVTDATLFACFSV 164
A+L+ N ++ P++ + Y S D N+ + L +T + + F+
Sbjct: 5 ALLTPNNNNVPTSPVQTTYTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTS 64
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
+++ D+ TG+S G+GFV++ ++DA A++ G L ++ I+ ++A N
Sbjct: 65 IGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPS--N 122
Query: 225 NEDKQSS 231
++ K S+
Sbjct: 123 DQIKGSN 129
Score = 62 (26.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRY 307
T P + Y ++V NL+ + L + F GA I V++ RD KG+ FV
Sbjct: 365 TLPPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGA--IVNVKILRDLTQQCKGYAFVSM 421
Query: 308 STHAEAALAIQMGNTTQSSYLFGKQMK 334
S + EA A+ N T L GK ++
Sbjct: 422 SNYTEAYNAMLSLNGTN---LAGKTLQ 445
Score = 41 (19.5 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 260
+KG G + +A ++ NGS G T NNP
Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNP 209
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 190 (71.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 51/153 (33%), Positives = 81/153 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + + A AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV++A S + T N+++ L +T + F + ++R
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205
V+ DQ TG SRG F+ F + +A+ AI G
Sbjct: 137 VLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 125 (49.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ N +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ AIN L G L S+ I+ ++A + +D
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFARPSSETIKD 105
Score = 110 (43.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
IF+ +L + + L+ F + + ++ +V+ D T + +GFGFV+ N ++A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 204 TGKWLGSRQIRCNWAT 219
G LG + ++ ++ T
Sbjct: 306 NGYRLGDKTLQVSFKT 321
Score = 72 (30.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+++ NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Score = 58 (25.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS--SYG--FIHYFDRRSAAM-AIL 112
++Y+ + +T+ ++++F G + +++ + S G FI FD+RS A AI
Sbjct: 107 NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIR-FDKRSEAEEAIA 165
Query: 113 SLNGRHLFG--QPIKVNWAYASGQRED 137
S NG G +PI V +A Q ++
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQSKN 192
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 210 (79.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 55/172 (31%), Positives = 95/172 (55%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E + F++ G V K+IR + Y F+ + D +A +
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 113 SLNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
+NG+ L G P K+N+A G++ D S +++FVGDL+ +V D L+ F VYPS
Sbjct: 64 KINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVYPS 122
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 218
C +V+ DQ G S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 123 CRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 214 (80.4 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 51/167 (30%), Positives = 84/167 (50%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTD 155
YGF+ + + AAMAI LNG + +P+KV++A AS + S H N+++ L P VT+
Sbjct: 154 YGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQ---STHANLYINRLEPHVTN 210
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQI 213
A L F + D +++ D TG SR GFV F +++A A++ + G + S I
Sbjct: 211 ANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIPFQSTPI 270
Query: 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 260
+A + +GNN +++ + N ++ N NNP
Sbjct: 271 YVKFANQLSGNNNGNNNNNIINSNSNNNNNNNSNSNFNNNNGNFNNP 317
Score = 106 (42.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAM 109
ST ++Y+ + VT L+EVF S G V K++ + GF+H+ RR A
Sbjct: 194 STHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALK 253
Query: 110 AILSLNGRHLFGQ--PIKVNWAYASGQREDTSGHFNI 144
A+ S+NG ++ Q PI V +A + + + NI
Sbjct: 254 AVSSMNGANIPFQSTPIYVKFANQLSGNNNGNNNNNI 290
Score = 68 (29.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/96 (19%), Positives = 44/96 (45%)
Query: 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 191
S + F I + +L + + L+ F+ + + S +++ + G +++
Sbjct: 442 SNNNNNIMSSFPIHISNLPNNIDETFLYKLFA-FGAISGVQLL-------NNGQAIITYL 493
Query: 192 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ Q Q+AIN L GK + R ++ T + +N++
Sbjct: 494 DYQTVQNAINTLNGKIISGRSLKVVCLTNSSPSNDN 529
Score = 57 (25.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 24/111 (21%), Positives = 42/111 (37%)
Query: 224 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283
NN + S D SS +G + N N +++ NL + + L++ F
Sbjct: 416 NNNNNFSDDYNGYNNYNGNSSSNGNNSNNNN---NIMSSFPIHISNLPNNIDETFLYKLF 472
Query: 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334
G I V++ + G + Y + AI NT + G+ +K
Sbjct: 473 ---AFGAISGVQLLNN-GQAIITYLDYQTVQNAI---NTLNGKIISGRSLK 516
Score = 53 (23.7 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI-RKDKSSYG 97
P D T ++ V NI + L+ +F G +E CK++ + K G
Sbjct: 76 PDLDALT--NLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNG 123
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 227 (85.0 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 58/170 (34%), Positives = 94/170 (55%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKS-SYGFIHYFDR 104
PG+ P S+YVG++H VTE +L E FS GP+ C+ + +S Y +I++
Sbjct: 6 PGY-PLA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
A A+ ++N + GQPI++ W+ G R+ SG NIF+ +L + + L+ FS
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFS 120
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + +V+ D+ G SRGFGFV F + AQ+AI+ + G L R++
Sbjct: 121 TFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Score = 226 (84.6 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 77/278 (27%), Positives = 127/278 (45%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK++ + S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G F NI+V +L +V + L
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SRGFGFV+F ++AQ A+ ++ G+ + R + A K
Sbjct: 211 FSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q+ EL E K+ T Q +YV NL + L +
Sbjct: 270 V----ERQN-------ELKR-RFEQMKQDRLTRY-----QGVNLYVKNLDDSIDDEKLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 190 (71.9 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 49/174 (28%), Positives = 90/174 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
++YV N+H V E LQ++FS G + K++R D +GF+++ A A++++
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NGR + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ +
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 126 (49.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATKGAG 223
+ + + + IR W+ + G
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPG 92
Score = 60 (26.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 321
+++ NL + L+ F + G + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMN 159
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 202 (76.2 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 50/163 (30%), Positives = 84/163 (51%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTD 155
YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ +
Sbjct: 13 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDE 70
Query: 156 ATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
L+ FS + ++M D TG S+G+ F++F + + +AI + G++L +R I
Sbjct: 71 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 130
Query: 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSE-DGKETTNTEAP 256
++A K E + S A+ ++ N S+ D +AP
Sbjct: 131 VSYAFKKDSKGE-RHGSAAERLLAAQNPLSQADRPHQLFADAP 172
Score = 108 (43.1 bits), Expect = 0.00074, P = 0.00074
Identities = 23/88 (26%), Positives = 51/88 (57%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRK----DKSSYGFIHYFDRRSAAMAIL 112
++++GN+ ++ E LL + FS+ G + + K++R + Y FI++ ++ AI
Sbjct: 58 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSG 140
++NG++L +PI V++A+ + + G
Sbjct: 118 AMNGQYLCNRPITVSYAFKKDSKGERHG 145
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 216 (81.1 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 53/173 (30%), Positives = 91/173 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++Y+GN+ +VT+ +L E+ GPV + +R + +GF + + A
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
LN LFG+PI+VN A + + +T N+FVG+L P V + L+ FS A
Sbjct: 72 LNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQ 130
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
+ + GRS+G+GFVS+ + + A +AI + ++L ++ I ++A K G E
Sbjct: 131 VARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGE 183
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 184 (69.8 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 58/178 (32%), Positives = 92/178 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
++ V + +T+ L+ +FSS G VE KLIR DK + YGF++Y + + A AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR-DKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+LNG L + IKV+ A S + + N+++ L +T + F + ++R
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGRIINSR 136
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNEDK 228
V+ DQ TG SRG F+ F + +A+ AI G K GS + I +A A N++K
Sbjct: 137 VLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA---ANPNQNK 191
Score = 122 (48.0 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ N +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 197 QSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
+ AIN L G L S+ I+ + A + + +D
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVARPSSESIKD 105
Score = 72 (30.4 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+++ NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 151 (58.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 36/99 (36%), Positives = 53/99 (53%)
Query: 125 KVNWAYASGQREDT--SGHFNIFVGDLSPEVTDATLFACFSV-YP-SCSDARVMWDQKTG 180
++NWA + + +++FVGDLS T+A L A F +P S RVM D +G
Sbjct: 235 RLNWASGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISG 294
Query: 181 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
+SR FGFV F + + Q A+ ++ G W R +R AT
Sbjct: 295 KSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALAT 333
Score = 123 (48.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 318
+P TTV+VG L+ +V++ LH F G +I++V++ K GFV+YS EA AI
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFG--LIQQVKIPPGKNCGFVKYSNREEAEEAIA 574
Query: 319 MGNTTQSSYLFGKQMKCSWG 338
Q + G +++ SWG
Sbjct: 575 ---AMQGFVIGGNRVRLSWG 591
Score = 106 (42.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/109 (24%), Positives = 51/109 (46%)
Query: 133 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192
GQ+ + +FVG LS +V++ TL F + ++ G++ GFV + N
Sbjct: 512 GQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKI----PPGKN--CGFVKYSN 565
Query: 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN--EDKQSSDAKSVVEL 239
+++A+ AI + G +G ++R +W N + +Q V +L
Sbjct: 566 REEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQL 614
Score = 73 (30.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR------KDKSS-YGFIHYFDRRSAAMA 110
S++VG++ TE L F P K +R KS +GF+ + + A
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFP-NSIKTVRVMTDPISGKSRCFGFVRFTEESERQRA 313
Query: 111 ILSLNGRHLFGQPIKV 126
++ +NG G+P++V
Sbjct: 314 LIEMNGAWFAGRPLRV 329
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 189 (71.6 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAA 108
D +T +V+V N + + L+E+FS GP E K+IR KS +GF+ Y +A
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFN--------------IFVGDLSPEV 153
A+L L+G+ + G+ + V A +R + F I++ +L +
Sbjct: 254 KAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-- 211
D L FS + S S A+VM + G+ +GFG V F + +DA A++++ G+ +GS+
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPL 371
Query: 212 -----QIRCNW 217
Q RC W
Sbjct: 372 HVTLGQARCRW 382
Score = 171 (65.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 48/171 (28%), Positives = 85/171 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIH-YFDRRSAA-MAILSLN 115
++++ N+ + L +FS+ G + CK++ D S G+ + +FD +AA AI +N
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 116 GRHLFGQPIKVN-WAY-----ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
G L + + V + + A + D + N+FV + ++ D L FS Y
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTE 226
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+V+ D +G+S+GFGFV + + AQ A+ DL GK + + + A K
Sbjct: 227 SVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQK 276
Score = 167 (63.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 44/160 (27%), Positives = 81/160 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
++YVG++ VTE +L + F GP+ ++ R + YG++++ A A+ +
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P ++ W+ R SG NIF+ +L + + LF FS + + +V
Sbjct: 79 MNFDLINGKPFRLMWSQPD-DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D G S+G+ +V F + A AI + G L +RQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 106 (42.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 204 TGKWLGSRQIRCNWA 218
+ + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 90 (36.7 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALA 316
+T V+V N ++ L F G G E V+V RD KGFGFVRY TH A A
Sbjct: 198 FTNVFVKNFGNDMDDEKLKEIFS--GYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 317 I 317
+
Sbjct: 256 V 256
Score = 79 (32.9 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAA 314
++ P +Y+ NL + L F S G+ +V V+ + KGFG V +S+ +A
Sbjct: 296 KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDAT 355
Query: 315 LAI-QM-GNTTQSSYLFGK--QMKCSW 337
A+ +M G T S L Q +C W
Sbjct: 356 KAVDEMNGRTVGSKPLHVTLGQARCRW 382
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 51/181 (28%), Positives = 92/181 (50%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAA 108
D +T +V+V N + + L+E+FS GP E K+IR KS +GF+ Y +A
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQ 253
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFN--------------IFVGDLSPEV 153
A+L L+G+ + G+ + V A +R + F I++ +L +
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D L FS + S S A+VM + G+ +GFG + F + ++A A++++ G+ +GS+ +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPL 371
Query: 214 R 214
+
Sbjct: 372 Q 372
Score = 173 (66.0 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 48/171 (28%), Positives = 85/171 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIH-YFDRRSAA-MAILSLN 115
++++ N+ + L +FS+ G + CK++ D S G+ + +FD +AA AI +N
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 116 GRHLFGQPIKVN-WAY-----ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
G L + + V + + A + D + N+FV + ++ D L FS Y
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTE 226
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+V+ D +G+S+GFGFV + + AQ A+ DL GK + + + A K
Sbjct: 227 SVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
Score = 170 (64.9 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 45/160 (28%), Positives = 81/160 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
++YVG++ VTE +L + F GP+ ++ R + YG++++ A A+ +
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P ++ W+ R SG NIF+ +L + + LF FS + S +V
Sbjct: 79 MNFDLINGKPFRLMWSQPD-DRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D G S+G+ +V F + A AI + G L +RQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 106 (42.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 204 TGKWLGSRQIRCNWA 218
+ + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 86 (35.3 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALA 316
+T V+V N ++ L F G E V+V RD KGFGFVRY TH A A
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGP--TESVKVIRDSSGKSKGFGFVRYETHEAAQKA 255
Query: 317 I 317
+
Sbjct: 256 V 256
Score = 70 (29.7 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAA 314
++ P +Y+ NL + L F S G+ +V V+ + KGFG + +S+ EA
Sbjct: 296 KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEAT 355
Query: 315 LAIQMGN 321
A+ N
Sbjct: 356 KAVDEMN 362
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 217 (81.4 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 77/291 (26%), Positives = 130/291 (44%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFD 103
DPS RS +++ N+ + L + FSS G + CK + D S YGF+ Y +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYAN 173
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH--F-NIFVGDLSPEVTDATLFA 160
SA AI LNG L + + V +R+ T+ F N++V +L+ TD L
Sbjct: 174 EESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + A VM D + G+S+GFGFV+F N DA A+ L G ++ W
Sbjct: 234 AFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYV- 287
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
G + ++ ++ + E + D +++N +P +++ E + ++
Sbjct: 288 GRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP--------SISDEKLK-EIF 338
Query: 281 RHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM--GNTTQSSYLF 329
F ++ + + KG GFV ++T EA A+ G +S L+
Sbjct: 339 SPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Score = 213 (80.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 58/186 (31%), Positives = 94/186 (50%)
Query: 32 GLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV---EGCK- 87
G AA P SG +T S+YVG++ VT+ L + F G V C+
Sbjct: 13 GSTAAVTSAPATSGGATATQFGNT--SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD 70
Query: 88 LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 147
L+ + YG++++ + + AA AI LN L+G+PI+V +++ SG NIF+
Sbjct: 71 LVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIK 129
Query: 148 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
+L + L FS + + +V D +G+S+G+GFV + N++ AQ AI L G
Sbjct: 130 NLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGML 188
Query: 208 LGSRQI 213
L +Q+
Sbjct: 189 LNDKQV 194
Score = 137 (53.3 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 46/125 (36%), Positives = 62/125 (49%)
Query: 109 MAILSLNGRHLFGQPIKVNWAYA-SGQREDTS-GHFNIFVGDLSPEVTDATLFACFSVYP 166
MA + L G+ G V A A SG T G+ +++VGDL VTD+ LF F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK------ 220
+ RV D T RS G+G+V+F N QDA AI +L L + IR ++ +
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 221 -GAGN 224
GAGN
Sbjct: 121 SGAGN 125
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 217 (81.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 60/225 (26%), Positives = 109/225 (48%)
Query: 31 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR 90
P A P P N G T S+YVG++H V E +L E FS+ GPV ++ R
Sbjct: 8 PAAAVAGAAAPQPGQN-QTG-SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCR 65
Query: 91 KDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFV 146
+ + Y ++++ A A+ ++N L G+P+++ W+ SG NIF+
Sbjct: 66 DNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMR-RSGAGNIFI 124
Query: 147 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
+L + + +++ FS++ + +V D+ G S+G+GFV F ++ AQ+AI + G
Sbjct: 125 KNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGM 183
Query: 207 WLGSRQIRCN-WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
L +++ + + N E +++ + V + N KET
Sbjct: 184 LLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKET 228
Score = 190 (71.9 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 74/286 (25%), Positives = 125/286 (43%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL-IRKDKSS--YGFIHYFDR 104
DP+ RS +++ N+ + + + FS G + CK+ I +D S YGF+H+
Sbjct: 111 DPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETE 170
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLF 159
+A AI +NG L G+ + V QR +T+ F N++V + TL
Sbjct: 171 EAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLE 230
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + + + VM + G+S+GFGFV+F N ++A++A+ L + ++ +
Sbjct: 231 KLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
+ ++ ++ K E K E + Q +YV NL V L
Sbjct: 289 ---AQKKSERHAELKK-------KHEQHK----AERMQKY-QGVNLYVKNLDETVDDDGL 333
Query: 280 HRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNT 322
+ F S G +V R KGFGFV + EA A+ N+
Sbjct: 334 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNS 379
Score = 121 (47.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 36/127 (28%), Positives = 57/127 (44%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
N++V +L V D L F Y + + A+VM D+ GRS+GFGFV F ++A SA+ +
Sbjct: 318 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTE 376
Query: 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 262
+ K + S+ + A + S + + + + G N P P Y
Sbjct: 377 MNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQP--GPGY 434
Query: 263 TTVYVGN 269
YV N
Sbjct: 435 ---YVAN 438
Score = 76 (31.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/101 (20%), Positives = 46/101 (45%)
Query: 38 QIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-- 95
+ +P N G +VYV N + L+++F+ G + C+++ + S
Sbjct: 194 KFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKG 253
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136
+GF+ + + A A+ +L+ + G +K++ A + E
Sbjct: 254 FGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSE 294
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 178 (67.7 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAA 108
D +T +V+V NI + + L+E+F GP E K+IR KS +GF+ Y +A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFN--------------IFVGDLSPEV 153
A+L L+G+ + G+ + V A +R + F I++ +L +
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D L FS + S S A+VM + G+ +GFG V F + ++A A++++ G+ +GS+ +
Sbjct: 314 NDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
Score = 171 (65.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 47/171 (27%), Positives = 85/171 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIH-YFDRRSAA-MAILSLN 115
++++ N+ + L +FS+ G + CK++ D S G+ + +FD +AA AI +N
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 116 GRHLFGQPIKVN-WAY-----ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
G L + + V + + A + D + N+FV ++ ++ D L F Y
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+V+ D +G+S+GFGFV + + AQ A+ DL GK + + + A K
Sbjct: 227 SVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
Score = 167 (63.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 44/160 (27%), Positives = 81/160 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
++YVG++ VTE +L + F GP+ ++ R + YG++++ A A+ +
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P ++ W+ R SG NIF+ +L + + LF FS + + +V
Sbjct: 79 MNFDLINGKPFRLMWSQPD-DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D G S+G+ +V F + A AI + G L +RQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 106 (42.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VGDL P+VT+ L+ F R+ D T G+G+V+FR DA+ A+N +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 204 TGKWLGSRQIRCNWA 218
+ + R W+
Sbjct: 80 NFDLINGKPFRLMWS 94
Score = 89 (36.4 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALA 316
+T V+V N+ ++ L F G E V+V RD KGFGFVRY TH A A
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGP--TESVKVIRDASGKSKGFGFVRYETHEAAQKA 255
Query: 317 I 317
+
Sbjct: 256 V 256
Score = 69 (29.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAA 314
++ P +Y+ NL + L F S G+ +V ++ + KGFG V +S+ EA
Sbjct: 296 KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEAT 355
Query: 315 LAIQMGN 321
A+ N
Sbjct: 356 KAVDEMN 362
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 211 (79.3 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 70/253 (27%), Positives = 117/253 (46%)
Query: 31 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKL 88
P +++A ++ +P+ +L + R++++G++ T TE L +VF+ G P + ++
Sbjct: 45 PVIISAASVQQLPAISLSGN---NAQRTLWIGDVPTDWTEETLSQVFTECGHAPYKVKRV 101
Query: 89 IRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFG-QPIKVNWAYASGQREDTSGHFNIFV 146
KD+ Y FI + A + LNG + G + I+ N +A+ S FN+ V
Sbjct: 102 YVKDELKGYCFIEFITFDEARQTLYDLNGNRIPGFKDIRFNLCFANDSYNPNS-EFNLHV 160
Query: 147 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
+ ++ DA L+ F Y SC A+ M+ G S+G GFV F NQ D Q A+ ++
Sbjct: 161 SSVPDDMADAELYRIFDKYQSCRGAK-MFRFVDGSSKGSGFVRFGNQTDQQMALVEMHRT 219
Query: 207 WLGSRQIRCNWATKGAGNNEDK-QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265
+G +I A G D+ +S KS + G+ T P+ Y
Sbjct: 220 KVGGCRIILKLAGS-RGERLDRGESRQFKSQRNDRRRDEKSGQYRNGTAVPQQTQVYDA- 277
Query: 266 YVGNLAPEVTQLD 278
Y GN P V +D
Sbjct: 278 Y-GN--PVVVPVD 287
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 210 (79.0 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+ I++ W+ SG N+F+ +L + + TL+ FS + ++V
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
M D + G S+G+ FV F+NQ A AI ++ GK L C N +D+++
Sbjct: 130 MSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDREAELR 183
Query: 234 KSVVELTN 241
E TN
Sbjct: 184 SKASEFTN 191
Score = 198 (74.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 70/271 (25%), Positives = 125/271 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L E FS+ G + K++ D+ S Y F+H+ ++ +A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
Query: 116 GRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSD 170
G+ L G + V RE + F N+++ + ++ D L FS Y
Sbjct: 159 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 218
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K ++Q+
Sbjct: 219 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV----ERQA 273
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ K + E G Q +Y+ NL + L F S G+
Sbjct: 274 -ELKQMFEQLKRERIRGC------------QGVKLYIKNLDDTIDDEKLRNEFSSFGS-- 318
Query: 291 IEEVRVQRD----KGFGFVRYSTHAEAALAI 317
I V+V ++ KGFG + +S+ +A A+
Sbjct: 319 ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 349
Score = 156 (60.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 49/174 (28%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L++VFS G K++ KS +GF+ + +A A+ +
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSG--HFNIFVGDLSPEVTDATLF 159
NGR + GQ I V A + +RE G +++ +L + D L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S S +VM Q+ G+S+GFG + F + +DA A+ ++ G+ LGS+ +
Sbjct: 311 NEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 211 (79.3 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 56/174 (32%), Positives = 92/174 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
+VYVGN+ + E L+ E+ + GPV + + + YGF+ + SA A +
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDAR 172
LNG +FG+ I+VN A A Q+ G +FV +L P+V + LF FS + +
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGA-ELFVNNLDPQVDEKILFDTFSRFGQLVTPPN 131
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
V+ D S+G+GFV+F + + + +A + + G++L S+QI +A K G E
Sbjct: 132 VVRDANN-ISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGE 184
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 188 (71.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 48/163 (29%), Positives = 85/163 (52%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTD 155
YGF+ + A I +N L+G+PI+VN A A + D NIF+G+L EV +
Sbjct: 75 YGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA--NIFIGNLDVEVDE 132
Query: 156 ATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214
L+ FS + ++M D +TG+S+ F F++F + + + +A++ + G++L +R I
Sbjct: 133 KLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPIS 192
Query: 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSE-DGKETTNTEAP 256
++A K E + S A+ ++ N S+ D +AP
Sbjct: 193 VSYAFKKDHKGE-RHGSAAERLLAAQNPSTHADRPHQLFADAP 234
Score = 60 (26.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPV 83
++Y G + +V+E LL E+F GPV
Sbjct: 14 TIYAGGLDDKVSETLLWELFVQAGPV 39
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 210 (79.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+ I++ W+ SG N+F+ +L + + TL+ FS + ++V
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
M D + G S+G+ FV F+NQ A AI ++ GK L C N +D+++
Sbjct: 188 MSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDREAELR 241
Query: 234 KSVVELTN 241
E TN
Sbjct: 242 SKASEFTN 249
Score = 198 (74.8 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 70/271 (25%), Positives = 125/271 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L E FS+ G + K++ D+ S Y F+H+ ++ +A AI +N
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 216
Query: 116 GRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSD 170
G+ L G + V RE + F N+++ + ++ D L FS Y
Sbjct: 217 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 276
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K ++Q+
Sbjct: 277 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV----ERQA 331
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ K + E G Q +Y+ NL + L F S G+
Sbjct: 332 -ELKQMFEQLKRERIRGC------------QGVKLYIKNLDDTIDDEKLRNEFSSFGS-- 376
Query: 291 IEEVRVQRD----KGFGFVRYSTHAEAALAI 317
I V+V ++ KGFG + +S+ +A A+
Sbjct: 377 ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 407
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 49/174 (28%), Positives = 85/174 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L++VFS G K++ KS +GF+ + +A A+ +
Sbjct: 249 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSG--HFNIFVGDLSPEVTDATLF 159
NGR + GQ I V A + +RE G +++ +L + D L
Sbjct: 309 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + S S +VM Q+ G+S+GFG + F + +DA A+ ++ G+ LGS+ +
Sbjct: 369 NEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 203 (76.5 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 56/175 (32%), Positives = 90/175 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRK----DKSSYGFIHYFDRRSAAMAIL 112
S+++G++ + E +++ FS+ G G K+I + Y F+ D S +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 113 SLNGRHLFGQ--PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 168
LNG+ + G P K YA+ G+R + F++FVGDL+ EV D L F +PSC
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSC 126
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWAT-KG 221
A+V+ D G SRG+GFV F ++ + + A+ + LG + IR + A KG
Sbjct: 127 KGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKG 180
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 204 (76.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 58/176 (32%), Positives = 89/176 (50%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKS-SYGFIHYFDRRSA 107
+PS ++VGN+ V L +F G VE ++I D+S +GF+ A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACF 162
A+ N L G+ + VN A G R + + F ++VG+L +V + L F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
S + +ARV++D++TGRSRGFGFV+ + + AI+ L G+ L R IR N A
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 210 (79.0 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 59/206 (28%), Positives = 103/206 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ V+E L ++FS G V ++ R K Y ++++ D + AI
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LNGRHLFGQPIKVNWAYASGQ-REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN + G+ ++ W+ R+ SG NIF+ +L P++ + L+ FSV+ ++
Sbjct: 99 LNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
+ D+ G+S+GFGFV F + A+ AI+ L G L ++I A + D Q +
Sbjct: 157 IATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV--APHLSRKERDSQLEE 213
Query: 233 AKSVVELTNGSSED-GKETTNTEAPE 257
K+ TN ++ ETT+ + E
Sbjct: 214 TKA--HYTNLYVKNINSETTDEQFQE 237
Score = 192 (72.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 76/275 (27%), Positives = 119/275 (43%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
++++ N+H + L + FS G + K+ + KS +GF+H+ + +A AI +L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 115 NGRHLFGQPIKV----NWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L GQ I V + Q E+T H+ N++V +++ E TD F+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
A + D G+ +GFGFV++ +DA A+ L L ++ A K NE
Sbjct: 247 SASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK---KNERMH 302
Query: 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289
V++ E E Q ++V NL V L F G
Sbjct: 303 ------VLKKQY-------EAYRLEKMAKY-QGVNLFVKNLDDSVDDEKLEEEFAPYGTI 348
Query: 290 VIEEV-RVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+V R + + KGFGFV +ST EA AI N
Sbjct: 349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 188 (71.2 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 33/75 (44%), Positives = 52/75 (69%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVT 154
Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 155 DATLFACFSVYPSCS 169
+ + F+ + S
Sbjct: 71 TEDIKSAFAPFGKIS 85
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 199 (75.1 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 60/179 (33%), Positives = 86/179 (48%)
Query: 50 GF-DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKS-SYGFIHYFDR 104
GF +P ++VGN+ V L +F G VE ++I D+S +GF+
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLF 159
A A+ N + G+ + VN A G R + F I+VG+L +V L
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
FS + DARV+ D++TGRSRGFGFV N+ + AI L G+ L R I+ N A
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 205 (77.2 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 50/155 (32%), Positives = 87/155 (56%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE LL F++ GPV C+ LI YG++++ A A+ +
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+ I++ W+ SG N+F+ +L + + TL+ FS + ++V
Sbjct: 71 MNFDLIKGKSIRLMWSQRDACLRK-SGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
M D++ G S+G+GFV +++Q+ A AI ++ GK L
Sbjct: 130 MTDEE-G-SKGYGFVHYQDQRAADRAIEEMNGKLL 162
Score = 194 (73.4 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 50/170 (29%), Positives = 88/170 (51%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L E FS G + K++ ++ S YGF+HY D+R+A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMN 158
Query: 116 GR-----HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
G+ LF K + RE + N+++ + ++ D +L + FS Y
Sbjct: 159 GKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLS 218
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+VM D +G+S+ FGFVSF + + A++A+ D+ G+ + + I A K
Sbjct: 219 VKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQK 267
Score = 161 (61.7 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 49/179 (27%), Positives = 88/179 (49%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAAM 109
P+ +VY+ N + + L+ VFS G K+++ KS +GF+ + ++A
Sbjct: 186 PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKN 245
Query: 110 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHFN--------------IFVGDLSPEVT 154
A+ +NGR + GQ I V A +R+ + F +++ +L +
Sbjct: 246 AVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D TL FSV+ S +VM Q+ G+S+GFG + F + + A A+ ++ G+ LGS+ +
Sbjct: 306 DETLRKEFSVFGSICRVKVM--QEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
Score = 113 (44.8 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL +VT+ LF F+ R+ D + RS G+G+V+F DAQ A+
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 203 LTGKWLGSRQIRCNWATKGA 222
+ + + IR W+ + A
Sbjct: 71 MNFDLIKGKSIRLMWSQRDA 90
Score = 80 (33.2 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 32/130 (24%), Positives = 59/130 (45%)
Query: 205 GKWLGSRQIRCNWATKGAG--NNEDKQSSDAKSVVELTNGSSEDG-------KETTNTEA 255
GK + S+ + +KG G + +D++++D +++ E+ D K + EA
Sbjct: 122 GKIMSSKVMTDEEGSKGYGFVHYQDQRAAD-RAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 256 P--ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYS 308
E ++T VY+ N ++ L F G + V+V +D K FGFV +
Sbjct: 181 ELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL--SVKVMKDASGKSKRFGFVSFD 238
Query: 309 THAEAALAIQ 318
+H A A++
Sbjct: 239 SHKAAKNAVE 248
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 209 (78.6 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 76/270 (28%), Positives = 113/270 (41%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSL 114
+++V N+ V L E FS G + CK+ YGF+ + SA AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHF---NIFVGDLSPEVTDATLFACFSVYPSCSDA 171
NG+ L + I V +RE + N++V +LS TD L F Y S S A
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA 254
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
VM D G+SR FGFV+F N +DA A+ L GK ++ W G + K
Sbjct: 255 VVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKE----WYV---GKAQKKSER 306
Query: 232 DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291
+ + GSS+ G + N T + E + +L F ++ + +
Sbjct: 307 ELELSRRYEQGSSDGGNKFDGLNLYVKNLDDT------VTDEKLR-ELFAEFGTITSCKV 359
Query: 292 EEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
KG GFV +S +EA+ + N
Sbjct: 360 MRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Score = 192 (72.6 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 58/200 (29%), Positives = 97/200 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
S+YVG++ VT+ L + F+ V ++ R ++ YG+++Y + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
LN +L G+ I++ ++ SG N+FV +L V + TL FS + +V
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSAR-RSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN-WATKGAGNNE-DKQSS 231
D G+SRG+GFV F + A++AI L GK L +QI + K + DK
Sbjct: 166 ATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF 224
Query: 232 DAKSVVELTNGSSEDGKETT 251
V L+ +++D +TT
Sbjct: 225 TNVYVKNLSEATTDDELKTT 244
Score = 129 (50.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE------------DTSGHF- 142
+GF+++ + AA A+ +LNG+ + V A +RE D F
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFD 326
Query: 143 --NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
N++V +L VTD L F+ + + + +VM D +G S+G GFV+F +A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL 385
Query: 201 NDLTGKWLGSRQI 213
N++ GK +G + +
Sbjct: 386 NEMNGKMVGGKPL 398
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 199 (75.1 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 51/159 (32%), Positives = 83/159 (52%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR-KDKSS--YGFIHYFDRRSAAMAILSLN 115
+Y+ N+ + + + FS G + C + + +D +S YGF+H+ +A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 116 GRHLFGQPIKVNWAYASGQRE-DTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
G Q + V RE + + HF N++V +LS E T+ L F Y + ++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212
M D++ GRSR FGFV++ N Q A +A+ L GK LG +
Sbjct: 235 MLDEE-GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNK 272
Score = 97 (39.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
+ G SG I++ +L + + ++ FSV+ + + V D+ G SRG+GFV F
Sbjct: 104 SGGNSSPDSG--KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDED-GNSRGYGFVHF 160
Query: 191 RNQQDAQSAINDLTGKWLGSRQI 213
+++ A++AI + G ++++
Sbjct: 161 DSEEAARAAIEKVNGMLCNNQKV 183
Score = 69 (29.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEA 313
E + +YV NL+ E T+ L F G ++ + R + FGFV Y + ++
Sbjct: 197 EKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYE-NPQS 255
Query: 314 ALAIQMG 320
ALA +G
Sbjct: 256 ALAAVIG 262
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 184 (69.8 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTS 139
NGR + G+ +KVNWA S Q++DTS
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTS 92
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS 235
G+ + ++++ NWAT + +D SS S
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVS 98
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 168 (64.2 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 58/188 (30%), Positives = 93/188 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSS---------YGFIHYF 102
++ V + +T+ L+ +FSS G VE KLIR +SS YGF++Y
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYL 80
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF 162
+ + A AI +LNG L + IKV++A S + + N+++ L +T + F
Sbjct: 81 NAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVEDMF 137
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATK 220
+ ++RV+ DQ TG SRG F+ F + +A+ AI G K GS + I +A
Sbjct: 138 LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA-- 195
Query: 221 GAGNNEDK 228
A N++K
Sbjct: 196 -ANPNQNK 202
Score = 115 (45.5 bits), Expect = 0.00054, P = 0.00054
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197
TSG + IFV +L + + L+ F + + ++ +V+ D T + +GFGFV+ N ++A
Sbjct: 252 TSG-WCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 310
Query: 198 SAINDLTGKWLGSRQIRCNWAT 219
AI L G LG + ++ ++ T
Sbjct: 311 MAIASLNGYRLGDKTLQVSFKT 332
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-----------KTGRSRGF 185
D G N+ V L +T L + FS A+++ D+ G S G+
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGY 74
Query: 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
GFV++ N +DA+ AIN L G L S+ I+ ++A + + +D
Sbjct: 75 GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKD 116
Score = 73 (30.8 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
++V NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 313
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 177 (67.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 66/210 (31%), Positives = 93/210 (44%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A + + S +FVG+L V A L F + V++D+ TGRSRGFGFV+
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+ + ++A G L R +R N A ED S +S ++GS G
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFG-SSGSGYGGGGG 197
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVR 306
+ A N VYVGNL+ V + L F G V V RD KGFGFV
Sbjct: 198 SG--AGSGN----RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 307 YSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336
Y + E AI+ + + L G+Q++ S
Sbjct: 252 YDSSQEVQNAIK---SLDGADLDGRQIRVS 278
Score = 154 (59.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189
Y G ++VG+LS V D L + FS +ARV++D+ +GRS+GFGFV+
Sbjct: 192 YGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 190 FRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
+ + Q+ Q+AI L G L RQIR + A
Sbjct: 252 YDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 85 (35.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAILS 113
++VGN+ V L ++F S G VE ++I DK + +GF+ A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIY-DKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 114 LNGRHLFGQPIKVNWAYASGQRED 137
NG L G+P++VN +RED
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKRED 175
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 203 (76.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 65/216 (30%), Positives = 105/216 (48%)
Query: 129 AYASGQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 187
A AS + + G N+FVG+LS VT+ L F + S AR+M ++ TGRSRGFG+
Sbjct: 263 AAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGY 321
Query: 188 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG 247
V F N DA A + + R+I ++AT G N+D+ G E
Sbjct: 322 VEFTNAADAAKAYEAMKEHEIDGRKINLDYAT-GRPANKDQ------------GGFKERA 368
Query: 248 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF----HSLGAGVIEEVRVQRDKGFG 303
+ + + +P+ T++VGNL + +H F + LG + ++ R KGFG
Sbjct: 369 QNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFG 428
Query: 304 FVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339
+V+YS+ EA A N Q + + G+ ++ + +
Sbjct: 429 YVQYSSVDEARKAY---NELQGAEIDGRPIRLDFST 461
Score = 113 (44.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
+FVG+L + ++ F + R+ D ++GR +GFG+V + + +A+ A N+L
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 204 TGKWLGSRQIRCNWATKGAGN 224
G + R IR +++T A N
Sbjct: 446 QGAEIDGRPIRLDFSTPRANN 466
Score = 82 (33.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSAAMAILSL 114
+++VGN+ VTE L + F G + + +D +G++ + + AA A ++
Sbjct: 278 NLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 115 NGRHLFGQPIKVNWAYASGQ--REDTSG 140
+ G+ K+N YA+G+ +D G
Sbjct: 338 KEHEIDGR--KINLDYATGRPANKDQGG 363
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 68/229 (29%), Positives = 108/229 (47%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLS 150
YGF+H+ + +A AI +NG L + + V + +RE G F N+++ +
Sbjct: 108 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFG 167
Query: 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
++ D L F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L
Sbjct: 168 EDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 226
Query: 211 RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNL 270
+QI A K ++Q+ EL E K+ T Q +YV NL
Sbjct: 227 KQIYVGRAQKKV----ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNL 269
Query: 271 APEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
+ L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 318
Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSS-YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + KS +GF+ + A A+ +
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ + F N++V +L + D L
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 280 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 203 LTGKWLGSRQIRCNWATK 220
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 114 (45.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CK-LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ C+ +I + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWA 129
+N + G+P+++ W+
Sbjct: 72 MNFDVIKGKPVRIMWS 87
Score = 98 (39.6 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 225
PS + V+ D+ G S+G+GFV F Q+ A+ AI + G L R++ G
Sbjct: 91 PSLRKSGVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF-------VGRF 141
Query: 226 EDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285
+ ++ +A EL G+ KE TN VY+ N ++ L F
Sbjct: 142 KSRKEREA----EL--GAR--AKEFTN------------VYIKNFGEDMDDERLKDLFGK 181
Query: 286 LGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333
G + +V + KGFGFV + H +A A+ N + L GKQ+
Sbjct: 182 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQI 229
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 181 (68.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 37/95 (38%), Positives = 61/95 (64%)
Query: 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
HF +FVG+L +V D +L+ FS YPS +V+ D++ G++RGFGFVSF++ A
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAW 87
Query: 201 NDLTGKWLGSRQIRCNWATKGAGNNE-DKQSSDAK 234
+ GK++GSR ++ + AT NE ++++ D+K
Sbjct: 88 REKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 205 (77.2 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 77/293 (26%), Positives = 134/293 (45%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL-IRKDKSS-YGFIHYFDRRSAAMAILSLN 115
+++V N+ V +L + FSS G + CK+ K S YG++H+ SA AI +N
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVN 334
Query: 116 GRHLFGQPIKVNWAYASGQREDTSGHFNIFVGD--LSPEVTDATLFACFSVYPSCSDARV 173
G + G+PI V + +R D ++ E+ L F SC +
Sbjct: 335 GTLILGKPINVERFVSKVERYKVENKVFFRNADESITIEILQQELSNRFGEIESC----I 390
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-----GSRQIRCNWATKGAGNNEDK 228
+ + G+S+G G V F+NQ+DAQ + + +G + G+ + N T N +
Sbjct: 391 LKNDANGKSKGLGLVEFKNQEDAQKILTE-SGALIISTIDGTTTVSSNGGTIEI-NGKPI 448
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
KS VE +E K+TT+ NN + + ++ + + +H +G
Sbjct: 449 TIDRIKSKVERF---TEYRKKTTDLSLFINNIDES------IDRDLIKEEFAKHGTIIGI 499
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWGSK 340
++++ R+KGFGF+ +S EA A+ N + FG KQ++ S+ +K
Sbjct: 500 KIVQDENA-RNKGFGFISFSEIQEAQKALDSLN----GFTFGSKQIQVSFSNK 547
Score = 192 (72.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 51/180 (28%), Positives = 88/180 (48%)
Query: 32 GLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTG-----PVEGC 86
G P + P G P P S+YVG++ V E +L E+FS G + C
Sbjct: 162 GAAGMPILSMSPIGAYQP---PHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVC 218
Query: 87 KLIRKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIF 145
+ +S Y ++++F+ A A+ +LN + G+P ++ W+Y + T+ NIF
Sbjct: 219 RDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIF 277
Query: 146 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205
V +L V +A L+ FS + + +V +++ G S+G+G+V F A+ AI + G
Sbjct: 278 VKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNG 335
Score = 120 (47.3 bits), Expect = 0.00055, P = 0.00055
Identities = 30/135 (22%), Positives = 70/135 (51%)
Query: 112 LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
+ +NG+ + IK + R+ T+ ++F+ ++ + + F+ + +
Sbjct: 441 IEINGKPITIDRIKSKVERFTEYRKKTTD-LSLFINNIDESIDRDLIKEEFAKHGTIIGI 499
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
+++ D+ R++GFGF+SF Q+AQ A++ L G GS+QI+ +++ K +K +
Sbjct: 500 KIVQDENA-RNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNG 558
Query: 232 DAKSVVE--LTNGSS 244
++ + + + G+S
Sbjct: 559 NSTKITKNIIQGGAS 573
Score = 38 (18.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
N KG G + +A+ ++ NG + K+ + + ++N Q GN + ++T
Sbjct: 506 NARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGN-STKIT 564
Query: 276 Q 276
+
Sbjct: 565 K 565
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 178 (67.7 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDKSS-YGFIHYFDRRSAA 108
D +T +V+V NI + + L+E+F GP E K+IR KS +GF+ Y +A
Sbjct: 30 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 89
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFN--------------IFVGDLSPEV 153
A+L L+G+ + G+ + V A +R + F I++ +L +
Sbjct: 90 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 149
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D L FS + S S A+VM + G+ +GFG V F + ++A A++++ G+ +GS+ +
Sbjct: 150 NDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 207
Score = 117 (46.2 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 32/108 (29%), Positives = 52/108 (48%)
Query: 114 LNGRHLFGQPIKVNWAYASGQR-EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN R ++ K A+ R D + N+FV ++ ++ D L F Y +
Sbjct: 6 LNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 65
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
V+ D +G+S+GFGFV + + AQ A+ DL GK + + + A K
Sbjct: 66 VIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 112
Score = 69 (29.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAA 314
++ P +Y+ NL + L F S G+ +V ++ + KGFG V +S+ EA
Sbjct: 132 KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEAT 191
Query: 315 LAIQMGN 321
A+ N
Sbjct: 192 KAVDEMN 198
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 199 (75.1 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 75/277 (27%), Positives = 126/277 (45%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDR 104
DPS +S V++ N+ + L + FS+ G + CK++ D +S +GF+HY +
Sbjct: 89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQ 148
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHF-NIFVGDLSPEVTDATLFACF 162
SA AI +NG + GQ + V +S +R + T F N+F +LS +V L
Sbjct: 149 ESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELL 208
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
Y ++ +M D K G+S+GFGF +F + + A++ + + GK + I A K
Sbjct: 209 QQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKI 267
Query: 223 GNNED-KQSSDAK-SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
+ K + + K V L + +D + N + E Q+ T+
Sbjct: 268 EREAELKHTFETKYQGVNLYIKNIDDSID--NDKLREVFSQFGTI--------------- 310
Query: 281 RHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
A V+++ + KGFGFV Y+ EA A+
Sbjct: 311 -----TSAIVMKDDKATTSKGFGFVCYTAPDEATRAV 342
Score = 183 (69.5 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 44/167 (26%), Positives = 84/167 (50%)
Query: 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRS 106
F P + S+YVG++ +V+E L E+F+ G V ++ R + SY +++Y++
Sbjct: 5 FTPISS-SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGAD 63
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
A A+ +LN + G+ ++ W+ SG N+F+ +L + L+ FS +
Sbjct: 64 AERALDTLNNTPIRGKACRIMWSQRDPSLRK-SGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V+ D S+GFGFV + Q+ A AI + G + +++
Sbjct: 123 NILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 40/167 (23%), Positives = 78/167 (46%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+V+ N+ V L+E+ G + ++ DK +GF ++ +A + +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENE 248
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH-F-------NIFVGDLSPEVTDATLFACFSVYP 166
NG+ G+PI A +RE H F N+++ ++ + + L FS +
Sbjct: 249 NGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFG 308
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ + A VM D K S+GFGFV + +A A+ ++ G+ +G++ +
Sbjct: 309 TITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPL 355
Score = 117 (46.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VGDL PEV++ LF F+ S+ RV D T RS + +V++ N DA+ A++
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 203 LTGKWLGSRQIRCNWATK 220
L + + R W+ +
Sbjct: 71 LNNTPIRGKACRIMWSQR 88
Score = 57 (25.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQM 319
V++ NL + L+ F + G I +V D KGFGFV Y T A AI
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGN--ILSCKVVTDDGNSSKGFGFVHYETQESADKAIAK 157
Query: 320 GN 321
N
Sbjct: 158 VN 159
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 199 (75.1 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 48 PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFD 103
P G P T S+YVG + VTE +L E+F+S GPV ++ R + Y ++++ +
Sbjct: 72 PSGTAP-TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHN 130
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
A+ LN + G+P ++ W+ G N+F+ +L P + + L FS
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKM-GTGNVFIKNLDPAIDNKALHDTFS 189
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V D+ G ++G+GFV F + + A +AI + G L +++
Sbjct: 190 AFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 171 (65.3 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 63/268 (23%), Positives = 117/268 (43%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + FS+ G + CK+ + + YGF+H+ SA AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + +R E +F N+++ +L E+T+ F + +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
++ DQ + RGFGFV++ N + AQ A+++L K +++ A K E+ +
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289
+ +E N N + ++ + L E + F ++ +
Sbjct: 348 KRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER--------LKAEFSA------FGTITSA 393
Query: 290 VIEEVRVQRDKGFGFVRYSTHAEAALAI 317
I + KGFGFV Y+T EA A+
Sbjct: 394 KIMTDEQGKSKGFGFVCYTTPEEANKAV 421
Score = 138 (53.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 37/140 (26%), Positives = 69/140 (49%)
Query: 90 RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH------- 141
+ DK +GF++Y + A A+ LN + G+ + V A +RE+
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKL 355
Query: 142 --------FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193
N+F+ +L EV D L A FS + + + A++M D++ G+S+GFGFV +
Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTP 414
Query: 194 QDAQSAINDLTGKWLGSRQI 213
++A A+ ++ + L + +
Sbjct: 415 EEANKAVTEMNQRMLAGKPL 434
Score = 133 (51.9 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
+++VG+L P VT+A LF F+ + RV D T RS G+ +V+F N +D + A+++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 203 LTGKWLGSRQIRCNWATK 220
L + R R W+ +
Sbjct: 141 LNYTLIKGRPCRIMWSQR 158
Score = 65 (27.9 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGN 321
V++ NL P + LH F + G + +V V KG+GFV + + A AI+ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 199 (75.1 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 49/159 (30%), Positives = 86/159 (54%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR-KDKSS--YGFIHYFDRRSAAMAILSL 114
S+Y G++ +VTE L ++F V ++ R +++ S Y +I++ + A A+ +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
N LF +PI++ + SG NIF+ +L + + LF FS + + +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+
Sbjct: 169 MDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 180 (68.4 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 78/285 (27%), Positives = 125/285 (43%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDR 104
DPST S +++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR---EDT-SGHF-NIFVGDLSPEVTDATLF 159
SA AI LNG + + + V +R E+T + F N++V +L E+ + L
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + S A VM DQ +G SR FGFV+F + A SA+ + G LG + A
Sbjct: 247 KTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 220 KGAGNNED-KQSSDAKSV--VELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276
K + E+ ++ + + + E + G++ K ++ E + + Y GN+
Sbjct: 306 KKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEY-GNVTSSKVM 364
Query: 277 LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
L+ G+ +GFGFV YS EA A+ N
Sbjct: 365 LNPQ--------GM--------SRGFGFVAYSNPEEALRALSEMN 393
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/133 (27%), Positives = 68/133 (51%)
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---------------SG 140
+GF+++ +AA A+ +NG L + V A +RE+ S
Sbjct: 271 FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQ 330
Query: 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
N+++ +L V D L FS Y + + ++VM + + G SRGFGFV++ N ++A A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389
Query: 201 NDLTGKWLGSRQI 213
+++ GK +G + +
Sbjct: 390 SEMNGKMIGRKPL 402
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 191 (72.3 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 54/185 (29%), Positives = 97/185 (52%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDK-----SSYGFIHYFDRRSAAMAI 111
S+++GN+ + E + F+ G V +LIR DK + YGF+ D + +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIR-DKITGKNAGYGFVELADDTAVERCL 61
Query: 112 LSLNGRHLFGQ--PIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSC 168
+NG+ L G P + + ++ ++ S F++FV DL+P+V D L+ F + SC
Sbjct: 62 RKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSC 121
Query: 169 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNWATKGAGNNED 227
+++ D G S+ GFVSF ++++ + A+ DL G LG + +R + A+ N+
Sbjct: 122 CSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRV--NKK 178
Query: 228 KQSSD 232
K+SS+
Sbjct: 179 KESSE 183
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 175 (66.7 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 49/136 (36%), Positives = 68/136 (50%)
Query: 205 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264
G+WLG RQIR NWAT+ + S+ K + S D E N +P N T
Sbjct: 3 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CT 49
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
VY G + +T+ + + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 50 VYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT 107
Query: 325 SSYLFGKQMKCSWGSK 340
+ G +KC WG +
Sbjct: 108 ---IEGHVVKCYWGKE 120
Score = 120 (47.3 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112
PS C +VY G + + +TE L+++ FS G + ++ DK Y F+ + SAA AI+
Sbjct: 45 PSNC-TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF-PDKG-YSFVRFNSHESAAHAIV 101
Query: 113 SLNGRHLFGQPIKVNW 128
S+NG + G +K W
Sbjct: 102 SVNGTTIEGHVVKCYW 117
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 197 (74.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 47/160 (29%), Positives = 78/160 (48%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG ++ V E L E+FS G V ++ R K Y +++Y AI
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
LN + G+P ++ W+ SG NIF+ +L P + + L FS + +V
Sbjct: 113 LNYNPIEGRPCRIMWSQRDPSAR-RSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKV 171
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D+ G+S+ FGFV + + A++AI ++ G L R++
Sbjct: 172 ATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 72/284 (25%), Positives = 125/284 (44%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS RS +++ N+H + L + FS+ G + CK+ + +GF+HY
Sbjct: 131 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETA 190
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLF 159
+A AI ++NG L + + V + RE + +F NI+V ++ ++ +
Sbjct: 191 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFE 250
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + DQ G+S+GFGFV+F + + A A+ +L K + ++I A
Sbjct: 251 KLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQ 309
Query: 220 KGAGNNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K E+ K+ +A V L + G + T+ L E
Sbjct: 310 KKRERLEELKKQYEA---VRLEKLAKYQGVNLFVKNLDD------TIDSEKLEEEF---- 356
Query: 279 LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322
+ F ++ + + + KGFGFV ++T EA AI NT
Sbjct: 357 --KPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Score = 137 (53.3 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 43/170 (25%), Positives = 80/170 (47%)
Query: 91 KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHF------- 142
K K +GF+++ D SA A+ LN + + GQ I V A +R E+ +
Sbjct: 271 KSKG-FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEK 329
Query: 143 -------NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
N+FV +L + L F + + + A+VM D+ G+S+GFGFV F ++
Sbjct: 330 LAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEE 388
Query: 196 AQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSVVELTNGSS 244
A AI ++ + + + + A K ++ +Q A++ + + N ++
Sbjct: 389 ATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAA 438
Score = 128 (50.1 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
+SG E+++ +++VG+L+P V +ATLF FS S RV D + +S G+ +V++
Sbjct: 44 SSGVAENSA---SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNY 100
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+D + AI +L + R R W+ +
Sbjct: 101 HKYEDGEKAIEELNYNPIEGRPCRIMWSQR 130
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 194 (73.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 49/157 (31%), Positives = 82/157 (52%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSA 107
D ++ ++ + + +T+ L +FS GP+ CK++R K+ Y GF+ Y +
Sbjct: 88 DRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDS 147
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
AI LNG ++ + +KV++A GQ +DT N++V +LS + D L FS Y
Sbjct: 148 EDAIQKLNGFYVRNKRLKVSYARPGGQSIKDT----NLYVINLSRNINDDMLDRIFSPYG 203
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++ D+ TGR RG FV + +++AQ AI L
Sbjct: 204 LIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKAL 240
Score = 135 (52.6 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193
Q+ D + N+ + L ++TD L+ FS + ++M D KTG S G+GFV ++ +
Sbjct: 85 QQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTE 144
Query: 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
D++ AI L G ++ +++++ ++A G + +D
Sbjct: 145 SDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKD 178
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 195 (73.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 55/167 (32%), Positives = 86/167 (51%)
Query: 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSA 107
P T S+YVG++H VTE +L + F+ + +L KD SS YG+ ++ R+ A
Sbjct: 21 PVTA-SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLC-KDASSGRSLCYGYANFLSRQDA 78
Query: 108 AMAILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 166
+AI N L G+ I+V W+ A R + G N+FV +L VT+A L F +
Sbjct: 79 NLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG--NVFVKNLPESVTNAVLQDMFKKFG 136
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ +V + G+SRG+GFV F + A +AI L + ++I
Sbjct: 137 NIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 154 (59.3 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 65/266 (24%), Positives = 116/266 (43%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL--IRKDKS-SYGFIHYFDRRSAAMAILSL 114
+V+V N+ VT +LQ++F G + CK+ + KS YGF+ + +A AI +L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 115 NGRHLFGQPIKVNWAYASGQR-EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
N + + I V R + + N+++ +L +V++ L F+ + +
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
D+ RG+ FV+F N +DA+ A + G GS+ C + G + K +
Sbjct: 233 AKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSK---CLYV----GRAQKKAERE- 283
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH-RHFHSLGAGVIE 292
+L ++ E A +N V N+A +L H ++ + +
Sbjct: 284 ----QLLREQFKEKHEEQKMIAKVSNIYVKNV---NVAVTEEELRKHFSQCGTITSTKLM 336
Query: 293 EVRVQRDKGFGFVRYSTHAEAALAIQ 318
+ KGFGFV +ST EA A++
Sbjct: 337 CDEKGKSKGFGFVCFSTPEEAIDAVK 362
Score = 138 (53.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFV 188
A +SG + +++VGDL P VT+ L+ F+ + S + R+ D +GRS +G+
Sbjct: 13 ASSSGSSSPVTA--SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYA 70
Query: 189 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+F ++QDA AI L + IR W+ +
Sbjct: 71 NFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 184 (69.8 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201
F IFVGDL +VT+ L F YP+ A+V++D K G+SRGFGFVSF + D SA N
Sbjct: 200 FRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFD-KVGKSRGFGFVSFSSSSDYISAFN 258
Query: 202 DLTGKWLGSRQIRCN---WATKGAGNNE 226
+ GK++G+R I+ W + A NN+
Sbjct: 259 TMNGKYIGNRPIKLRKSKWKDRLASNNK 286
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 190 (71.9 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 59/217 (27%), Positives = 102/217 (47%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L++ FS+ G V ++I R +
Sbjct: 150 SPVREPID--NLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 205
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + + +S +AI L G+ L G PI V + A R + +SG
Sbjct: 206 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSGPM 264
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + + +M D TGRS+G+GF++F + + A+ A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVEL 239
L G L R +R T+ D D + ++L
Sbjct: 325 LNGFELAGRPMRVGHVTERLDGGTDITFPDGEQELDL 361
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 191 (72.3 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 54/191 (28%), Positives = 93/191 (48%)
Query: 43 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKSSYG--F 98
P NL P + R+V+ + ++ L+E FS+ G V ++I R + S G +
Sbjct: 137 PIDNLTP--EERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAY 194
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHFNIFVGDL 149
I + D S +AI L+G+ L G PI V + A R + ++G ++VG L
Sbjct: 195 IEFVDSTSVPLAI-GLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPMRLYVGSL 253
Query: 150 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209
+T+ L F + ++M D +TGRS+G+GF++F + + A+ A+ L G L
Sbjct: 254 HFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELA 313
Query: 210 SRQIRCNWATK 220
R ++ T+
Sbjct: 314 GRPMKVGHVTE 324
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 168 (64.2 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 204 TGKWLGSRQIRCNWATK 220
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 188 (71.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 188 (71.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 58/217 (26%), Positives = 101/217 (46%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EP+ NL P + R+V+ + ++ L++ FS+ G V ++I R +
Sbjct: 140 SPVREPVD--NLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 195
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + + +S +AI L G+ L G PI V + A R + T G
Sbjct: 196 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPM 254
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + + +M D TGRS+G+GF++F + + A+ A+
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 314
Query: 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVEL 239
L G L R +R T+ + D D ++L
Sbjct: 315 LNGFELAGRPMRIGHVTERLDGSTDITFPDGDQELDL 351
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 187 (70.9 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 54/194 (27%), Positives = 93/194 (47%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS-----SYGFIHYFDRRSAAMAIL 112
+VYVG +V EPLL E+F G V + + + YGF+ + ++A AI
Sbjct: 14 AVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNADYAIK 73
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA- 171
+N +G+P +VN A A ++ D NIF+G+L P++ L+ FS +
Sbjct: 74 IMNMIKRYGKPTRVNKASAHSKKLDVGA--NIFIGNLDPQI-GKLLYDTFSTFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
R+M + TG S+G+ F+ F + +AI + ++L + I + A K E + S
Sbjct: 131 RIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
+ ++ N S+
Sbjct: 190 GTEQLLAAQNPLSQ 203
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 189 (71.6 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 56/190 (29%), Positives = 89/190 (46%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKSSYG--FIHYFDRRSAAMAIL 112
R+V+ + +V L+E FSS G V +LI K K G +I + D S A+A L
Sbjct: 237 RTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALA-L 295
Query: 113 SLNGRHLFGQPIKVNWAYASGQR----------EDTSGHFNIFVGDLSPEVTDATLFACF 162
L+G+ L G PI V A R + +G ++VG L +T+ L F
Sbjct: 296 GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIF 355
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ +++ D +TGRS+G+GF+++ N DA+ A+ L G L R ++ T+
Sbjct: 356 EPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERL 415
Query: 223 GNNEDKQSSD 232
N +D
Sbjct: 416 DMNTTSLDTD 425
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 188 (71.2 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 188 (71.2 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 188 (71.2 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 188 (71.2 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 188 (71.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 188 (71.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 188 (71.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 188 (71.2 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EPI NL P + R+V+ + ++ L+E FS+ G V ++I R +
Sbjct: 136 SPVREPID--NLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSR 191
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + D S +AI L G+ + G PI V + A R + ++G
Sbjct: 192 RSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM 250
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + ++M D +TGRS+G+GF++F + + A+ A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 203 LTGKWLGSRQIRCNWATK 220
L G L R ++ T+
Sbjct: 311 LNGFELAGRPMKVGHVTE 328
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 187 (70.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
++Y+ N+ QV E +L E+F G V+ + R DK + YGF+ Y A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPR-DKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN LFG+ ++ N A + D N+F+G+L EV + LF FS + +
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGA--NLFIGNLDDEVDEKMLFDIFSSFGQIMTVK 137
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
VM ++ S+G GF+S+ N + + AI ++ +++ ++++ ++A K E
Sbjct: 138 VMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 187 (70.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAIL 112
++Y+ N+ QV E +L E+F G V+ + R DK + YGF+ Y A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPR-DKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN LFG+ ++ N A + D N+F+G+L EV + LF FS + +
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVGA--NLFIGNLDDEVDEKMLFDIFSSFGQIMTVK 137
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
VM ++ S+G GF+S+ N + + AI ++ +++ ++++ ++A K E
Sbjct: 138 VMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 165 (63.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
HF +FVG+L P+ D L FS YPS S V D+KT +++GFGFV+F +D A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 201 NDLTGKWLGSRQIR 214
++ GK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 165 (63.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
HF +FVG+L P+ D L FS YPS S V D+KT +++GFGFV+F +D A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 201 NDLTGKWLGSRQIR 214
++ GK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 29 YHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL 88
+HP P + P P+ + PP + +Y+G+I+ VTE ++ +FS G V C L
Sbjct: 743 HHPPQHPTPDV-PKPNESAPP-VPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFL 800
Query: 89 IRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
++ + +GF+ + ++SA AI ++NG L G+ IKV
Sbjct: 801 MQNADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKV 842
Score = 126 (49.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/128 (25%), Positives = 57/128 (44%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
I++G ++ VT+ + + FS + +M + TG+ +GFGFV F ++ A AI +
Sbjct: 771 IYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATM 830
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSS-DAKSVVELTNGSSEDGKETTNTEAPENNPQY 262
G L R I+ TK + NN + +S + + N ++ N NN
Sbjct: 831 NGFELLGRSIKVGRPTKSSNNNNNNNNSINNNNNTNNNNNNNNINNNINNNNNNNNNNNN 890
Query: 263 TTVYVGNL 270
T N+
Sbjct: 891 TNTNNNNI 898
Score = 115 (45.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 39 IEPIPSGN-LPPGFDPSTCRS---VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS 94
I+P + +PP + ST + +YVG++H +TE +++ FS G ++ L KD S
Sbjct: 566 IQPTTTTTPIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLAL-GKDAS 624
Query: 95 S----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126
Y FI Y ++ SAA A+ S+ + G+ IKV
Sbjct: 625 GKSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKV 660
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 265 VYVGNLAPEVTQLDLHRHFHSLGAGV----IEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320
+Y+G++ VT+ + F G + ++ + KGFGFV + A AI
Sbjct: 771 IYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATM 830
Query: 321 NTTQSSYLFGKQMK 334
N + L G+ +K
Sbjct: 831 NGFE---LLGRSIK 841
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 182 (69.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/180 (28%), Positives = 92/180 (51%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSS-YGFIHYFDRRSAA 108
D +T +V+V N + + L+++FS GP E K+IR KS +GF+ Y +A
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQ 253
Query: 109 MAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHFN--------------IFVGDLSPEV 153
A+L L+G+ + G+ + V A +R + F I++ +L +
Sbjct: 254 KAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETI 313
Query: 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
D L FS++ S S A+VM + G+ +GFG V F + ++A A+N++ G+ +GS+ +
Sbjct: 314 NDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTL 371
Score = 179 (68.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 71/272 (26%), Positives = 122/272 (44%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIH-YFDRRSAA-MAILSLN 115
++++ N+ + L +FS+ G + CK++ D S G+ + +FD +AA AI +N
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 116 GRHLFGQPIKVN-WAY-----ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 169
G L + + V + + A + D + N+FV + ++ D L FS Y
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTE 226
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229
+V+ D TG+S+GFGFV + + AQ A+ +L GK + + + C G + K
Sbjct: 227 SVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK-VLC------VGRAQKK- 277
Query: 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289
+ + EL E K T P P Y + E + + F S+
Sbjct: 278 ---IERLAELRR-RFERLKLKDKTRPP-GVPIYIKNLDETINDEKLKEEFSL-FGSISRA 331
Query: 290 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
+ + V + KGFG V +S+ EA+ A+ N
Sbjct: 332 KVM-MEVGQGKGFGVVCFSSFEEASKAVNEMN 362
Score = 164 (62.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 43/160 (26%), Positives = 80/160 (50%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
++YVG++ VTE +L + F GP+ ++ R + YG++++ A A+ +
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
+N + G+P ++ W+ SG NIF+ +L + + LF FS + + +V
Sbjct: 79 MNFDLINGKPFRLMWSQPDDHLRK-SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213
+ D G S+G+ +V F + A AI + G L +RQ+
Sbjct: 138 VCDDN-G-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 181 (68.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200
HF +FVG+L+ EVTD +LF FS Y S ARV+ D++T +S+G+GFVSF + D A
Sbjct: 226 HFRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAA 285
Query: 201 NDLTGKWLGSRQIRCNWAT 219
++ GK++GS + AT
Sbjct: 286 REMQGKYIGSHPVLLRRAT 304
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 127 (49.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
+S Q E +G N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+
Sbjct: 329 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 387
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
+Q AQ+AIN + G L ++++ + G + +Q S
Sbjct: 388 DSQAAAQNAINTMNGCQLSGKKLKVQ-LKRDNGQQQQQQQS 427
Score = 101 (40.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYG--FIHYFDRRSAAMAILSLN 115
++VG + V+E +Q +FS G ++ +++R ++S G F+ Y + A A+ +LN
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 116 GRHLF-GQ--PIKVNWAYASGQRE 136
GRH+ G P+ V WA +R+
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQ 194
Score = 85 (35.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 38/160 (23%), Positives = 73/160 (45%)
Query: 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYG--FIHYFDRRSAAMAILSL 114
++VG + +TE L +F V +I++ ++ G F+ R A I S
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 115 -NGRHLFG--QPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLFACFSVYP 166
N + L G P++V +A +R D + +FVG L V++ + + FS Y
Sbjct: 74 HNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYG 133
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206
+ D +++ S+G F+ + +++ A +A+ L G+
Sbjct: 134 TIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEALNGR 172
Score = 75 (31.5 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 242 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301
G S +G ++ E P +++ N+ E +L F G + +V V + G
Sbjct: 319 GISNNGTSIPSSLQTEG-PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 377
Query: 302 ----FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334
FGF+ Y + A A AI NT L GK++K
Sbjct: 378 ISKCFGFISYDSQAAAQNAI---NTMNGCQLSGKKLK 411
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 182 (69.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 57/217 (26%), Positives = 99/217 (45%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDK 93
+P EP+ NL P + R+V+ + ++ L++ FS+ G V ++I R +
Sbjct: 149 SPVREPVD--NLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 204
Query: 94 SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR---------EDTSGHF 142
S G ++ + + +S +AI L G+ L G PI V + A R + G
Sbjct: 205 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPM 263
Query: 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
++VG L +T+ L F + + +M D TGRS+G+GF++F + + A+ A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVEL 239
L G L R +R T+ D D ++L
Sbjct: 324 LNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDL 360
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 181 (68.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 71/275 (25%), Positives = 118/275 (42%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFD 103
DPS S V+V N+ + L ++FS+ G V CK+ R D S YGF+ ++
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVAR-DASGVSKGYGFVQFYS 80
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163
S A NG + Q I V + GQ + + N++V +L TDA L F
Sbjct: 81 DLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFG 140
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
+ + A VM D + G+SR FGFV+F + A +AI + G + +++ A +
Sbjct: 141 EFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTN 199
Query: 224 NNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
ED K + + ++ N + +N + ++ + +T + H
Sbjct: 200 RTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF--SEFGTITSCKVMVH 257
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317
+ + KG GFV +ST EA+ A+
Sbjct: 258 SNGIS------------KGVGFVEFSTSEEASKAM 280
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 178 (67.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 47/194 (24%), Positives = 101/194 (52%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKS-SYGFIHYFDRRSA 107
+P+T ++VG + + + L++ F G V G ++I + D+S YG++ + ++ A
Sbjct: 166 EPAT---IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 108 AMAILSLNGRHLFGQPIKVNWAYA--SGQRE------DTSGHFN--IFVGDLSPEVTDAT 157
AI + G+ + G+PI + + + +G + DT + +F+G+LS
Sbjct: 223 EKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDA 282
Query: 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217
+F F+ + R+ +T + +GFG+V F N +DA+ A++ L G+++ +R +R ++
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 218 ATKGAGNNEDKQSS 231
++ N+ + S
Sbjct: 343 SSPRPNNDGGRGGS 356
Score = 162 (62.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193
+ E+T IFVG LS + D L F ARV++++ T RSRG+G+V F N+
Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219
Query: 194 QDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNED-KQSSDAKS 235
A+ AI ++ GK + R I C+ +T K AGNN+ K+ D S
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263
Score = 60 (26.2 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/102 (19%), Positives = 50/102 (49%)
Query: 242 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ---LDLH-RHFHSLGAGVIEEVRVQ 297
G+++ K+ +T + ++ T+++GNL+ + +L +H + + +
Sbjct: 250 GNNDRAKKFGDTPSEPSD----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETE 305
Query: 298 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339
+ KGFG+V++S +A A+ + Q Y+ + ++ + S
Sbjct: 306 QPKGFGYVQFSNMEDAKKAL---DALQGEYIDNRPVRLDFSS 344
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 176 (67.0 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201
F IF GDL +V D L F+ +PS ARV+ D++TG+S+GFGFVSFR D A+
Sbjct: 198 FRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMK 257
Query: 202 DLTGKWLGSRQIRCNWAT 219
++ G+++GSR I+ +T
Sbjct: 258 EMDGRYVGSRPIKLRKST 275
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 182 (69.1 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 52/191 (27%), Positives = 90/191 (47%)
Query: 43 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKSSYG--F 98
P NL P + R+V+ + ++ L++ FS+ G V ++I R + S G +
Sbjct: 155 PIDNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAY 212
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---------SGHFNIFVGDL 149
+ + D S +AI L G+ + G PI V + A R +G ++VG L
Sbjct: 213 VEFVDSTSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMASMLQRGGAGPMRLYVGSL 271
Query: 150 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209
+T+ L F + ++M D +TGRS+G+GF+SF + + A+ A+ L G L
Sbjct: 272 HFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELA 331
Query: 210 SRQIRCNWATK 220
R ++ T+
Sbjct: 332 GRPMKVGHVTE 342
WARNING: HSPs involving 920 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 415 363 0.00083 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1170
No. of states in DFA: 613 (65 KB)
Total size of DFA: 247 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.56u 0.18s 32.74t Elapsed: 00:00:02
Total cpu time: 32.63u 0.19s 32.82t Elapsed: 00:00:02
Start: Thu May 9 18:07:14 2013 End: Thu May 9 18:07:16 2013
WARNINGS ISSUED: 2