BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014955
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 175/287 (60%), Gaps = 21/287 (7%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA A+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA 233
+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNT 188
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K + ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 189 KQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 233
Query: 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 234 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 277
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 44/221 (19%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEA 255
A +A+ + G+ + ++++ NWAT S K+T+N
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT----------------------PSSQKKDTSN--- 95
Query: 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHA 311
+ V+VG+L+PE+T D+ F G A V++++ + KG+GFV +
Sbjct: 96 ------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
Query: 312 EAALAI-QMGNTTQSSYLFGKQMKCSWGSK--PTPPGTSSN 349
+A AI MG +L G+Q++ +W ++ P P T N
Sbjct: 150 DAENAIVHMG----GQWLGGRQIRTNWATRKPPAPKSTQEN 186
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ YGF+ ++++ A
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 108 AMAILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGD 148
AI+ + G+ L G+ I+ NWA S Q +T + ++ G
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 211
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
++ +TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 209 GSRQIRCNWATKGAGNNEDKQSSD 232
++C W + ++ Q D
Sbjct: 266 EGHVVKCYWGKESPDMTKNFQQVD 289
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 176/304 (57%), Gaps = 38/304 (12%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI------RKDKSS-------------YG 97
R++YVGN+ VTE L+ ++FS GP + CK+I R+ SS Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 98 FIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDA 156
F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTE 128
Query: 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216
+ + F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR N
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276
WAT+ + Q ++ K + ++ N +P+N TVY G +A +T
Sbjct: 189 WATRKPPAPKSTQETNTKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTD 235
Query: 277 LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336
+ + F G I E+RV +KG+ FVR+STH AA AI N T + G +KC
Sbjct: 236 QLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCY 290
Query: 337 WGSK 340
WG +
Sbjct: 291 WGKE 294
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 55/228 (24%)
Query: 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 186
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 187 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 240
FV F +DA +A+ + G+ + ++++ NWAT
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-------------------- 102
Query: 241 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 296
S K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 --PSSQKKDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 297 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 343
+ KG+GFV + +A AI MG +L G+Q++ +W ++ P
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMG----GQWLGGRQIRTNWATRKPP 195
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSA 107
D S V+VG++ ++T ++ F+ G + ++++ YGF+ ++++ A
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 108 AMAILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGD 148
AI+ + G+ L G+ I+ NWA S Q +T + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
++ +TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 209 GSRQIRCNWATKGAGNNEDKQSSD 232
++C W + ++ Q D
Sbjct: 283 EGHVVKCYWGKESPDMTKNFQQVD 306
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 195 bits (495), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 171/298 (57%), Gaps = 32/298 (10%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
F G I E+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 171/298 (57%), Gaps = 32/298 (10%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSL 114
+++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 115 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACF 162
NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222
+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S+ K + S D E + +P N TVY G + +T+ + +
Sbjct: 187 PAPKSTYESNTKQL-------SYD--EVVSQSSPNN----CTVYCGGVTSGLTEQLMRQT 233
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
F G I E+RV DKG+ FVR+S+H AA AI N T + G +KC WG +
Sbjct: 234 FSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 160/295 (54%), Gaps = 20/295 (6%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
+++++G++ + E L FS G V K+IR ++ YGF+ + +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 113 SLNGRHL--FGQPIKVNWA-YASGQ-REDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 167
S NG + QP ++NWA +++G+ R +T F+IFVGDL+ +VTD L F S YPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D TG S+G+GFV F ++ + A+ ++ G + SR +R AT + +
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+ SS A V L+ G + +G T +++ + + TT++VG L EVT +L + F+ G
Sbjct: 264 QYSSQA---VILSGGYASNGAATHGSQS-DGDSSNTTIFVGGLDSEVTDEELRQSFNQFG 319
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 341
+ V++ KG GFV++S + A AIQ S + GKQ ++ SWG P
Sbjct: 320 E--VVSVKIPAGKGCGFVQFSDRSSAQEAIQ----KLSGAIIGKQAVRLSWGRSP 368
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113
S+ +++VG + ++VT+ L++ F+ G V K+ GF+ + DR SA AI
Sbjct: 292 SSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAGKGCGFVQFSDRSSAQEAIQK 349
Query: 114 LNGRHLFGQPIKVNWA 129
L+G + Q ++++W
Sbjct: 350 LSGAIIGKQAVRLSWG 365
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 20/370 (5%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAI 111
R++++G++ V E L FS TG + K+IR + YGFI + +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 112 LSLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPS 167
+ NG + G + ++NWA + SGQ+ D +IFVGDL+P+VTD L F V Y S
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 168 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 227
A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R + AT N
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATP-KKNVGV 201
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
+Q K+V +T S+ PE++ TT+ V NL VT+ +L + F LG
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTS 347
+ V++ KG+G+V++ T A A+Q Q + + ++ SW P G
Sbjct: 262 EVIY--VKIPATKGYGYVQFKTRPSAEEAVQR---MQGQVIGQQAVRISWSKNPGQDGWV 316
Query: 348 SNPLPPPAAAPIPGLSAADLLAY--ERQIAMSKMGGVHALMHPQ---AQHPLKQAAMGVG 402
+ P D AY + ++ GG +PQ + +A G G
Sbjct: 317 TQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAG-G 375
Query: 403 SAGASQAIYD 412
AGA Q +YD
Sbjct: 376 VAGAEQELYD 385
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 23 LQQQSL---YHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSS 79
+QQQ + +P + + P+ + PP D TC ++ V N+ VTE L++ FS
Sbjct: 201 VQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESD-VTCTTISVANLDQNVTEEELKKAFSQ 259
Query: 80 TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134
G V K+ YG++ + R SA A+ + G+ + Q ++++W+ GQ
Sbjct: 260 LGEVIYVKI--PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 312
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 22/299 (7%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAI 111
++++VG++ + E L FS TG V K+IR +S YGF+ + R +A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 112 LSLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VY 165
+ +G + QP ++NWA +++G++ + ++FVGDLSP+VTD L FS Y
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGN 224
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT K A
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
N+ + SS A V L G +G +++ + T++VG + P+V DL + F
Sbjct: 287 NQQQHSSQA---VILAGGHGSNGSMGYGSQS-DGESTNATIFVGGIDPDVIDEDLRQPFS 342
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKPT 342
G + V++ KG GFV+++ A AI+ N T + GK ++ SWG P
Sbjct: 343 QFGE--VVSVKIPVGKGCGFVQFADRKSAEDAIESLNGT----VIGKNTVRLSWGRSPN 395
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMA 110
++ R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F+ Y A +A
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA 131
Query: 111 ILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS
Sbjct: 132 LQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 190
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA K
Sbjct: 191 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
++VG+L +T+ L F V ++ ++M D K ++ + FV + DA A+ L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
GK + + ++ NWA + +QSS +T N
Sbjct: 136 NGKQIENNIVKINWAFQS------QQSS---------------SDDTFN----------- 163
Query: 264 TVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319
++VG+L V L F L V+ +++ +G+GFV +++ +A A+
Sbjct: 164 -LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM-- 220
Query: 320 GNTTQSSYLFGKQMKCSWGSK 340
++ Q L G+ ++ +W +K
Sbjct: 221 -DSMQGQDLNGRPLRINWAAK 240
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319
P+ TT Y+GN+ T+ DL F + G I + + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCI-- 393
Query: 320 GNTTQSSYLF-GKQMKCSWGSK 340
+++ F G+ ++ WG +
Sbjct: 394 --VALANFPFQGRNLRTGWGKE 413
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 161/330 (48%), Gaps = 35/330 (10%)
Query: 21 ALLQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSST 80
A QQ S G +A P P+GN P+ RS+++G++ + E L F T
Sbjct: 54 AWAQQPSQQQYGAMATTNPNPSPTGN------PNEVRSLWIGDLQYWMDENYLSTCFYHT 107
Query: 81 GPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWA-YASG 133
G + K+IR ++ YGF+ + +A + + NG + Q ++NWA +G
Sbjct: 108 GELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAG 167
Query: 134 QREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192
+R D S IFVGDL+ +VTD L F SVY S A+V+ D+ TGRS+G+GFV F +
Sbjct: 168 ERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFAD 227
Query: 193 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTN 252
+ + A+ ++ G +R +R G N+ + K+ + N + G
Sbjct: 228 ESEQLRAMTEMNGVLCSTRPMRI-----GPAANKKPVGTPQKATYQ--NPQATQG----- 275
Query: 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAE 312
E++P TT++VG L P V + L + F G V V++ K GFV++ T A
Sbjct: 276 ----ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV--HVKIVAGKRCGFVQFGTRAS 329
Query: 313 AALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342
A A+ N TQ L G+ ++ SWG P+
Sbjct: 330 AEQALSSLNGTQ---LGGQSIRLSWGRSPS 356
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKL----IRKDKSSYGFIHYFDRRS 106
D S +++VG++ VT+ +LQE F S V G K+ I YGF+ + D
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 107 AAMAILSLNGRHLFGQPIKVNWAY----------------ASGQREDTSGHFNIFVGDLS 150
A+ +NG +P+++ A + Q E + IFVG L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 151 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
P V + L FS Y +++ ++ G FV F + A+ A++ L G LG
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTRASAEQALSSLNGTQLGG 344
Query: 211 RQIRCNWATKGAGNNEDK 228
+ IR +W + D+
Sbjct: 345 QSIRLSWGRSPSSKQTDQ 362
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 31/300 (10%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAI 111
++++VG++ + E L FS T V K+IR ++ YGF+ + R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 112 LSLNGRHL--FGQPIKVNWA-YASGQREDTSG--HFNIFVGDLSPEVTDATLFACFS-VY 165
S +G + QP ++NWA +++G++ + +IFVGDL+P+V+DA L F+ Y
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 166 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGN 224
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT K A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 225 NEDKQSSDAKSVV--ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
+ S A ++ NGS DG E+ N +T++VG L +VT+ DL +
Sbjct: 298 YGQQNGSQALTLAGGHGGNGSMSDG-ESNN----------STIFVGGLDADVTEEDLMQP 346
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 341
F G + V++ KG GFV+++ A AI N T + GK ++ SWG P
Sbjct: 347 FSDFGE--VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGT----VIGKNTVRLSWGRSP 400
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 149/314 (47%), Gaps = 37/314 (11%)
Query: 43 PSGNLPPGFDPSTC---RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---- 95
P PP P+T R++++G++ + E L F+ TG + K+IR ++
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 96 YGFIHYFDRRSAAMAILSLNGRHLFGQP---IKVNWA-YASGQREDTSGHFNIFVGDLSP 151
YGFI + +A + + N + P ++NWA +SG + D S + IFVGDL+
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAA 164
Query: 152 EVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210
+VTD L F + YPS A+V+ D+ TGR++G+GFV F ++ + A+ ++ G +
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCST 224
Query: 211 RQIRCNWAT--KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
R +R A KG D S A V +N+P TTV+VG
Sbjct: 225 RPMRIGPAASKKGVTGQRDSYQSSAAGVTT------------------DNDPNNTTVFVG 266
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328
L VT L F G I V++ K GFV++S + A A++M N Q L
Sbjct: 267 GLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ---L 321
Query: 329 FGKQMKCSWGSKPT 342
G ++ SWG P+
Sbjct: 322 GGTTVRLSWGRSPS 335
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP+ +V+VG + VT+ L+ VFS G + K+ + GF+ + ++ A A+
Sbjct: 257 DPNNT-TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC--GFVQFSEKSCAEEAL 313
Query: 112 LSLNGRHLFGQPIKVNWAYASGQRE 136
LNG L G ++++W + ++
Sbjct: 314 RMLNGVQLGGTTVRLSWGRSPSNKQ 338
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 149/296 (50%), Gaps = 31/296 (10%)
Query: 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY----GFIHYFDRRSAAMAI 111
RS+++G++ + E L VF TG K+IR ++ Y GFI + + +A +
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 112 LSLNGRHLFG--QPIKVNWA-YASGQREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYP 166
+ NG + Q ++NWA +G+R G +FVGDL+P+VTD L F +VY
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYS 198
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ SR +R G N+
Sbjct: 199 SVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRT-----GPAANK 253
Query: 227 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 286
+ S + T + E++P TT++VG + VT+ DL F
Sbjct: 254 KPLTMQPASY------------QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQF 301
Query: 287 GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342
G V V++ K GFV+Y+ A A A+ + N TQ L G+ ++ SWG P+
Sbjct: 302 GELV--HVKIPAGKRCGFVQYANRACAEQALSVLNGTQ---LGGQSIRLSWGRSPS 352
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP T +++VG + VTE L+ VF G + K+ + GF+ Y +R A A+
Sbjct: 274 DP-TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC--GFVQYANRACAEQAL 330
Query: 112 LSLNGRHLFGQPIKVNWAYASGQRE 136
LNG L GQ I+++W + ++
Sbjct: 331 SVLNGTQLGGQSIRLSWGRSPSNKQ 355
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 146/299 (48%), Gaps = 31/299 (10%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAM 109
S +S+++G++ + E + VF+ +G K+IR YGFI + A
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 110 AILSLNGRHL--FGQPIKVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDATLFACF-S 163
+ + NG + Q ++NWA A +R T G IFVGDL+PEVTD L F +
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
VY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ +R +R A
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAAN--- 233
Query: 224 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283
K+ + + ++ T A +N+P TT++VG L VT +L F
Sbjct: 234 ----------KNALPMQPAMYQN---TQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 280
Query: 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342
G + V++ K GFV+Y+ A A A+ + N TQ L G+ ++ SWG P
Sbjct: 281 GQFGE--LLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ---LGGQSIRLSWGRSPN 334
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111
DP+ +++VG + VT+ L+ +F G + K+ + GF+ Y ++ SA A+
Sbjct: 256 DPNNT-TIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC--GFVQYANKASAEHAL 312
Query: 112 LSLNGRHLFGQPIKVNWAYASGQRED 137
LNG L GQ I+++W + ++ D
Sbjct: 313 SVLNGTQLGGQSIRLSWGRSPNKQSD 338
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 146/300 (48%), Gaps = 38/300 (12%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKDKSS----YGFIHYFDRRSAAMA 110
++++VG++H + E L F+S E K+IR + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 164
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 276
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTN--TEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282
TNG + G N PE + TT++VG L VT DL +
Sbjct: 277 -------------RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP 323
Query: 283 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 341
F+ G I V++ KG GFV++ A A++ N T + GKQ ++ SWG P
Sbjct: 324 FNEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQTVRLSWGRNP 377
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ + YGF+ + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 113 SLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHFNIFVGDLSPEVTD 155
+NG R P K N G + E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L F+ + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 216 NWATKGAGNNEDKQSSD 232
+W A +KQ D
Sbjct: 372 SWGRNPA----NKQPRD 384
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117
+++VG + + VT+ L++ F+ G + K+ GF+ + +R +A A+ LNG
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PVGKGCGFVQFVNRPNAEEALEKLNGT 362
Query: 118 HLFGQPIKVNWAYASGQREDTSGHFNIFV 146
+ Q ++++W ++ + N +V
Sbjct: 363 VIGKQTVRLSWGRNPANKQPRDKYGNQWV 391
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 177/378 (46%), Gaps = 62/378 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILS 113
++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A +S
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MS 152
Query: 114 LNGR------HLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-S 163
+N + HLF K+NWA G RE + + ++IFVGDLSP V + +++ F S
Sbjct: 153 MNNKPIPGTNHLF----KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFAS 208
Query: 164 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223
Y SC A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT
Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP--- 265
Query: 224 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY-----TTVYVGNLAPEVTQLD 278
K + S V + S A + PQ+ +TV+VG L+ V++ +
Sbjct: 266 ----KSKAHVFSPVNVVPVSM---PPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEE 318
Query: 279 LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
L F + G I V++ KG GFV++ A +AI N Q L +++ SWG
Sbjct: 319 LKYLFQNFGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLSWG 373
Query: 339 -----------------SKPTPPGTSSNP---LPPPAA-APIPGLSAADLLAYER--QIA 375
S+ T P TS P LPP A +P P ++ + L R I
Sbjct: 374 RNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLALQTRGAPIG 433
Query: 376 MSKMGGVHALMHPQAQHP 393
M G AL+ Q P
Sbjct: 434 MEISIGSPALVPDQMHIP 451
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 37/199 (18%)
Query: 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189
Y S + E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 190 FRNQQDAQSAINDLTGKWLGSRQI-RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGK 248
F + +A SA++ G+ + + NWA+ G +
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGG------------------------LR 176
Query: 249 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFG 303
E + ++A E +++VG+L+P V + D++ F S A ++ + + +G+G
Sbjct: 177 EKSISKASE-----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
Query: 304 FVRYSTHAE--AALAIQMG 320
FVR++ + +ALA G
Sbjct: 232 FVRFTDENDQKSALAEMQG 250
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAA 108
P F + +V+VG + V+E L+ +F + G + K+ GF+ + +R+SA
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI--PPGKGCGFVQFVNRQSAE 352
Query: 109 MAILSLNGRHLFGQPIKVNW 128
+AI L G L I+++W
Sbjct: 353 IAINQLQGYPLGNSRIRLSW 372
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 34/298 (11%)
Query: 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKDKSS----YGFIHYFDRRSAAMA 110
++++VG++ + E L F+S E K+IR + YGF+ + A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 111 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 164
+ NG + QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT N
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+Q G T +E N TT++VG L VT DL + F
Sbjct: 283 GYQQQ------------GGYMPSGAFTRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFS 327
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 341
G I V++ KG GFV++ A A++ N T + GKQ ++ SWG P
Sbjct: 328 EFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQTVRLSWGRNP 379
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSS----YGFIHYFDRRSAAMAIL 112
S++VG++ V++ LL E FS P V+ K++ + YGF+ + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 113 SLNGRHLFGQPIKVNWAY-----------------ASGQREDTSGHFNIFVGDLSPEVTD 155
+NG + +++ A A + E + + IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L FS + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 216 NWATKGA 222
+W A
Sbjct: 374 SWGRNPA 380
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 42 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHY 101
+PSG + +++VG + + VT+ L++ FS G + K+ GF+ +
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PVGKGCGFVQF 348
Query: 102 FDRRSAAMAILSLNGRHLFGQPIKVNWA 129
+R +A A+ LNG + Q ++++W
Sbjct: 349 VNRPNAEEALEKLNGTVIGKQTVRLSWG 376
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 25/299 (8%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAI 111
++++G++ + +Q++++S K++R SS Y F+ + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 112 LSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SV 164
+ N + G K+NWA G + + F+IFVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 224
YPSC+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP---- 261
Query: 225 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
+ + S A S + + S+ + + N + +P TTV+VG LA +++ DL F
Sbjct: 262 -KSRASIAADSALGIVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQ 318
Query: 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343
G I +++ KG GFV+YS + A AI NT Q + + ++ +WG P
Sbjct: 319 PFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWGHNTLP 372
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 122/272 (44%), Gaps = 38/272 (13%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + +TE LL +VFS GP+ ++ R K Y +++Y D + AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
LN + G+P ++ W+ R+ SG NIF+ +L P + + L FS + +
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+ G SRGFGFV F+ + DA+ AI + G + ++ D
Sbjct: 169 VALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVP---------KKD 218
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AG 289
S +E EA N +T +YV N+ E T + + F G +
Sbjct: 219 RISKLE---------------EAKAN---FTNIYVKNIDVETTDEEFEQLFSQYGEIVSA 260
Query: 290 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
+E+ + KGFGFV + H AA A++ N
Sbjct: 261 ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 35/278 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++++ N+H + L E FS+ G V CK+ + + +GF+H+ + A AI ++
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG + G + V R E+ +F NI+V ++ E TD FS Y
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-K 228
A + D + G+ +GFGFV+F + A A+ +L GK S+ + A K E+ K
Sbjct: 259 SAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELK 317
Query: 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288
+ + + +L Q +++ NL + L F G
Sbjct: 318 KQYEQYRLEKLAKF------------------QGVNLFIKNLDDSIDDEKLKEEFAPYG- 358
Query: 289 GVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
I RV RD KGFGFV +S+ EA A+ N
Sbjct: 359 -TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 130/277 (46%), Gaps = 42/277 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
S+YVG + V+E LL ++FS G V ++ R ++ Y ++++ D + AI
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ + G NI++ +L P + + +L FS + +
Sbjct: 99 LNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILS 154
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G SRGFGFV F N+ DA+ AI + G + +++ + +D+QS
Sbjct: 155 CKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV----SKKDRQS 209
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG--- 287
+ E ++T VYV N+ E +Q + F G
Sbjct: 210 -----------------------KLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKIT 246
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
+ V+E+ + +GFGFV + HA AA A+ N +
Sbjct: 247 SAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELE 283
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
+VYV NI + ++ +E+F G + ++ KD +GF+++ D +AA A+
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 114 LNGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATL 158
LN GQ + V A Y + + E + + N+FV +L + D L
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202
F+ + + + A+VM D+ TG SRGFGFV F ++A AI +
Sbjct: 339 KEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITE 381
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFG 303
TT +E P+ ++YVG L P V++ L+ F +G+ + +RV RD G+
Sbjct: 25 TTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGS--VSSIRVCRDAITNTSLGYA 82
Query: 304 FVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+V + H AI+ N T + GK + W +
Sbjct: 83 YVNFHDHEAGPKAIEQLNYT---LIKGKPCRIMWSQR 116
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 43/279 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V D+ SRGFGFV F + AQ AIN + G L R++ G+ + ++ +
Sbjct: 130 VACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV-------FVGHFKSRRERE 180
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
A EL + E +T +YV NL +V + L F G +
Sbjct: 181 A----ELGARALE----------------FTNIYVKNLPVDVDEQGLQDLFSQFGKML-- 218
Query: 293 EVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSS 326
V+V RD + FGFV + H EA A+ N + S
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVS 257
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 33/285 (11%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S ++++ N+ + L + FS+ G + CK+ + S +GF+H+ +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G NI+V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 222 AGN-NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
NE K+ + L Q +YV NL + L
Sbjct: 270 VERQNELKRRFEQMKQDRL------------------RRYQGVNLYVKNLDDSIDDDKLR 311
Query: 281 RHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 321
+ F GVI +V + KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSL 114
++YV N+ V E LQ++FS G + K++R + +GF+++ A A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
NG+ + G+ + A +R++ N++V +L + D L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ + A
Sbjct: 312 KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 317
++YVG+L P+VT+ L+ F AG I +RV RD G+ ++ + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 318 QMGNTTQSSYLFGKQMKCSWGSK 340
+T L G+ ++ W +
Sbjct: 70 ---DTMNFEMLKGQPIRIMWSQR 89
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVGTKPLYVALAQRKEERK 375
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 47/281 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H+ VTE +L E FS GPV ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+PI++ W+ QR+ + SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+ FV F Q+ A AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N EV L F G +
Sbjct: 179 REA----ELGAKAKE----------------FTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSS 326
V+V RD KGFGFV Y H +A A++ N + S
Sbjct: 219 --SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEIS 257
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S V++ N+ + L + FS+ G + CK++ + S Y F+H+ +
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + EV D +L
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
FS + +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 210 LFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ EL + +E + Q +Y+ NL + L
Sbjct: 269 KV----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G+ +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSL 114
+VY+ N +V + L+E+FS G K++R +GF+ Y A A+ +
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQR-------------EDTSGH--FNIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R E S + N+++ +L + D L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ +GS+ + A
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++Y+ N+ + + L++ FS G + K++ +D S +GF+ + A A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVGSKPLYVALAQRKEERK 375
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+ +++ + AI+ N YL + + S+ K
Sbjct: 147 INFASFDASDAAIEAMN---GQYLCNRPITVSYAFK 179
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+ +++ + AI+ N YL + + S+ K
Sbjct: 147 INFASFDASDAAIEAMN---GQYLCNRPITVSYAFK 179
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+VYVG + +V+EPLL E+F GPV + KD+ + YGF+ + A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 113 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDA 171
+N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E + S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-RHGS 189
Query: 232 DAKSVVELTNGSSE 245
A+ ++ N S+
Sbjct: 190 AAERLLAAQNPLSQ 203
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 250
+++DA AI + L + IR N K + +N++ L G++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------ 101
Query: 251 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGF 304
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F
Sbjct: 102 --------------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 305 VRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+ +++ + AI+ N YL + + S+ K
Sbjct: 147 INFASFDASDAAIEAMN---GQYLCNRPITVSYAFK 179
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 31/284 (10%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++QS EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 321
F L G I +V + KGFGFV +S+ EA A+ N
Sbjct: 313 EF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 39/272 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ ++ R + SY +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ SRG+GFV F + A AI + G L R++ + E +
Sbjct: 130 VVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
AK V+E TN VY+ N ++ L F + G +
Sbjct: 185 AK-VMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 293 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
+V + R +GFGFV Y H EA A+ N
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAM 109
++ S+YVG++ V+E L ++FS G V ++ R K Y ++++ D +
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 110 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 166
AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+
Sbjct: 95 AIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 167 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 226
+++ D+ G+S+GFGFV F + A+ AI+ L G L ++I
Sbjct: 151 DILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV----------- 198
Query: 227 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 286
+ ++ +++ E YT +YV N+ E T F
Sbjct: 199 ----------------APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 287 GAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQ 324
G V + D KGFGFV Y H +A A++ N ++
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 283
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 123/291 (42%), Gaps = 45/291 (15%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDR 104
DPS + ++++ N+H + L + FS G + K+ + +GF+H+ +
Sbjct: 117 DPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 176
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLF 159
+A AI +LNG L GQ I V + +R E+T H+ N++V +++ E TD
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + A + D G+ +GFGFV++ +DA A+ L L ++ A
Sbjct: 237 ELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 220 KGAGNNED----KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
K NE K+ +A + ++ Q ++V NL V
Sbjct: 296 K---KNERMHVLKKQYEAYRLEKMAKY------------------QGVNLFVKNLDDSVD 334
Query: 276 QLDLHRHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGN 321
L F G I +V R KGFGFV +ST EA AI N
Sbjct: 335 DEKLEEEFAPY--GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 234 KSVVELTNGSSEDGKE--TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291
K+ +L N + +D ++ T +E+ ++YVG+L P V++ L+ F +G+ +
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGS--V 64
Query: 292 EEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV RD G+ +V ++ H AI+ N T + G+ + W +
Sbjct: 65 SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTP---IKGRLCRIMWSQR 116
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D TGRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 317
F G +V + KGFGFV +S+ EA A+
Sbjct: 313 EFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 39/272 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 130 VVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
AK V+E TN VY+ N ++ L F + G +
Sbjct: 185 AK-VMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 293 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
+V + R +GFGFV Y H EA A+ N
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ D +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ I V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 50/295 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 50/295 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 50/295 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H TE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 50/295 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 50/295 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 219 --SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 42/277 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ V+E L ++FS G V ++ R K Y ++++ D +A AI
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+ +
Sbjct: 96 LNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
++V D+ TG+S+GFG+V F + A AI+ L G L ++I G + K+
Sbjct: 152 SKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV-------GPHLSKKE 203
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR---HFHSLG 287
++K E +T VY+ N+ E T + F
Sbjct: 204 RESK--------------------FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTD 243
Query: 288 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 324
+ V+E +KGFGFV + H +A ++ N T+
Sbjct: 244 SVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTE 280
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 35/286 (12%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS + ++++ N+H + L + FS G + K+ + +G++H+ +
Sbjct: 114 DPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEED 173
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLF 159
SA+ AI +LNG L GQ I V + +RE + +F N+++ +++ E TD
Sbjct: 174 ESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFE 233
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
+ + +D+ V+ G ++GFGFV+F N +DA + +L + + N A
Sbjct: 234 ELVAKF-GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQ 292
Query: 220 KGAGNNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K ++ K+ +A + ++ Q +++ NL +
Sbjct: 293 KKYERQQELKKQYEATRMEKMAKY------------------QGINLFIKNLDDSIDDKK 334
Query: 279 LHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
L F G +V + KGFGFV +ST EA AI N
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 234 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293
K+ +L N S +D +E TN E ++ ++YVG+L P V++ L+ F +GA +
Sbjct: 7 KTAEQLENLSLQDKQEGTNEEN-QSETVSASLYVGDLDPSVSEAHLYDIFSPIGA--VSS 63
Query: 294 VRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340
+RV RD G+ +V ++ H A AI+ N T + GK + W +
Sbjct: 64 IRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTP---IKGKLCRIMWSQR 113
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + +VM D G+SRGFGFVSF +DAQ A++D+ GK L + I A K
Sbjct: 210 WFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G+ +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 47/272 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI+ + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F GA +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
V+V D +GFGFV + H +A A+
Sbjct: 219 --SVKVMTDDHGKSRGFGFVSFERHEDAQKAV 248
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E F G K++ D +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + S + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F+ G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 128/273 (46%), Gaps = 42/273 (15%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++ VT+ L + F G V + L+ + YG++++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 114 LNGRHLFGQPIKVNWAYA--SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 171
LN L+G+PI+V +++ S +R SG NIF+ +L + L FS + +
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 172 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 231
+V D +G+S+G+GFV + N++ AQ AI L G L +Q+ + +Q
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-------RQER 205
Query: 232 DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---A 288
D+ + N ++T VYV NLA T DL F G +
Sbjct: 206 DSTA----------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 289 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
V+ + + KGFGFV + +AA A++ N
Sbjct: 244 AVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 126/282 (44%), Gaps = 37/282 (13%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFD 103
DPS RS +++ N+ + L + FSS G + CK + D S YGF+ Y +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYAN 173
Query: 104 RRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF---NIFVGDLSPEVTDATLFA 160
SA AI LNG L + + V +R+ T+ N++V +L+ TD L
Sbjct: 174 EESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y + A VM D + G+S+GFGFV+F N DA A+ L G ++ W
Sbjct: 234 AFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVG 288
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
A ++++ EL ++ KE + Q + +YV NL P ++ L
Sbjct: 289 RAQKKSERET-------ELRVRYEQNLKEAADKF------QSSNLYVKNLDPSISDEKLK 335
Query: 281 RHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
F G + +V RD KG GFV ++T EA A+
Sbjct: 336 EIFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Score = 38.5 bits (88), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 46 NLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYF 102
NL D ++YV N+ +++ L+E+FS G V K++R + GF+ +
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF 162
A A+ L+G+ + +P+ V A ++ED + P ++
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQ---RKEDRRVRLQAQFSQVRPVAMQPSVGPRM 423
Query: 163 SVYP 166
VYP
Sbjct: 424 PVYP 427
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALA 316
T++YVG+L VT L F +G V VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVT--VRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 317 IQMGNTTQSSYLFGKQMKCSW 337
IQ N L+GK ++ +
Sbjct: 94 IQELNYIP---LYGKPIRVMY 111
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S ++V N+ + L + S+ G + C ++ + S YGF+H+
Sbjct: 90 DPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFA 160
+A AI +NG L G+ + V + +RE G F N+++ + ++ D L
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKD 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ ++ E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRTF--------EQMKQDRITRY-----QVVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 136/306 (44%), Gaps = 54/306 (17%)
Query: 51 FDPST----CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYF 102
+PST S+YVG++H VTE +L E FS GP+ + LI S+Y ++++
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLF 159
+ A A+ ++N + G+P+++ W+ QR+ + SG NIFV +L + + L+
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
S + + V+ D+ S+G+GFV F + A+ AI + G L R++
Sbjct: 117 DTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV---- 170
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
G + ++ +A EL + E + VY+ N ++ L
Sbjct: 171 ---GQFKSRKEREA----ELGARAKE----------------FPNVYIKNFGEDMDDERL 207
Query: 280 HRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334
F G + V+V D KGFGFV + H +A A+ N + L GKQ+
Sbjct: 208 KDLFGKFGPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIY 262
Query: 335 CSWGSK 340
K
Sbjct: 263 VGRAQK 268
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+++F GP K++ + +GF+ + A A+ +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ L G+ I V A +R+ D + N++V +L + D L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 27/282 (9%)
Query: 49 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRS 106
PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFAC 161
A AI ++NG L + + V + +RE G N+++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 162 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221
FS + + +VM D +GRSRGFGFV++ N ++AQ A+ ++ GK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 281
++Q EL + +E N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 282 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
F G +V + KGFGFV +S+ EA A+ N
Sbjct: 313 EFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 39/272 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+Y+G++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172
+N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 232
V+ D+ SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 130 VVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYG 184
Query: 233 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 292
AK V+E TN VY+ N ++ L F + G +
Sbjct: 185 AK-VMEFTN-----------------------VYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 293 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
+V + R +GFGFV Y H EA A+ N
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+FS+ G K++ + +GF++Y + A A+ +
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ + F N++V +L + D L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + +VM + G S+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ FS G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 162/342 (47%), Gaps = 65/342 (19%)
Query: 45 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGF 98
G+L P +D +T R ++ N+ L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQP---IKVNWAYASGQRE-------DTSGHFNIFVGD 148
+ + AA A+L NG + P +K+NWA +S + + +IFVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 149 LSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207
L+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N + Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 208 LGSRQIRCNWATKG-----AGNNEDKQSS--------DAKSVVE----LTNGSSEDGKET 250
L R I+ T G +GNN+ +SS D++ + + L+NG++ G +
Sbjct: 230 LNGRAIKVG-PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKR 288
Query: 251 TNT--------EAPENN----PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298
+ + P N P TTV++G L+ VT+ +L +F G I V++
Sbjct: 289 NHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYVKIPV 346
Query: 299 DKGFGFVRYSTH--AEAALAIQMGNTTQSSYLFGKQMKCSWG 338
K GFV+Y AEAA+A G +S +++ SWG
Sbjct: 347 GKCCGFVQYVDRLSAEAAIAGMQGFPIANS-----RVRLSWG 383
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL-IRKDKSSYGFIHYFDRRSAAMA 110
DP+ +V++G + + VTE L+ F G + K+ + K GF+ Y DR SA A
Sbjct: 309 DPNNT-TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGK---CCGFVQYVDRLSAEAA 364
Query: 111 ILSLNGRHLFGQPIKVNWAYASGQ 134
I + G + ++++W ++ Q
Sbjct: 365 IAGMQGFPIANSRVRLSWGRSAKQ 388
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 35/270 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEG---CKLIRKDKSSYGFIHYFDRRSAAMAILSL 114
S+YVG++ V E L ++F+ PV C+ + Y ++++ + A+ A+ SL
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
N + +PI++ + SG N+F+ +L + + L+ FS + + +V
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 178
Query: 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 234
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +D+ S++
Sbjct: 179 MD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESG 233
Query: 235 SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVI 291
+V P +T VYV NL E+T +L + F G + V+
Sbjct: 234 AV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 270
Query: 292 EEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321
+ + + FGFV + + AA+A++ N
Sbjct: 271 MKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 121/288 (42%), Gaps = 39/288 (13%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDR 104
DPST S V++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 137 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKE 196
Query: 105 RSAAMAILSLNGRHLFGQPIKV-NWAYASGQREDTSGHF----NIFVGDLSPEVTDATLF 159
+A AI LNG L + + V ++ + SG N++V +L E+TD L
Sbjct: 197 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 256
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F Y S A VM DQ +G SR FGFV+F + + A A+ + G LG + A
Sbjct: 257 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 220 KGAGNNED---KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276
K + E+ K + S E GS+ +Y+ NL V
Sbjct: 316 KKSDREEELRRKFEQERISRFEKLQGSN--------------------LYLKNLDDSVND 355
Query: 277 LDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGN 321
L F G +V + +GFGFV YS EA LA++ N
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 21/182 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILS 113
+VYV N+ ++T+ L++ F G + ++ KD+S S+GF+++ +AA+A+
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---------SGHF------NIFVGDLSPEVTDATL 158
+NG L + V A RE+ F N+++ +L V D L
Sbjct: 299 MNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218
FS Y + + +VM + + G SRGFGFV++ N ++A A+ ++ GK +G + + A
Sbjct: 359 KEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 219 TK 220
+
Sbjct: 418 QR 419
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS---SYGFIHYFDRRSA 107
F+ ++Y+ N+ V + L+E+FS G V CK++ + +GF+ Y + A
Sbjct: 336 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEA 395
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQRE 136
+A+ +NG+ + +P+ V A +R+
Sbjct: 396 LLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 39/272 (14%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR---KDKSSYGFIHYFDRRSAAMAILSL 114
S+Y G++ +VTE L ++F V ++ R + Y +I++ + A A+ +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
N LF +PI++ + SG NIF+ +L + + LF FS + + +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 234
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ + D
Sbjct: 169 MDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD------- 220
Query: 235 SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294
E T T P++T VYV NL E+ + +L + F GVI
Sbjct: 221 --------------ENTPT------PRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSA 258
Query: 295 RVQRDKG-----FGFVRYSTHAEAALAIQMGN 321
V RD+ FGFV + AA A++ N
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 114/285 (40%), Gaps = 33/285 (11%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDR 104
DPST S +++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 105 RSAAMAILSLNGRHLFGQPIKV-----NWAYASGQREDTSGHFNIFVGDLSPEVTDATLF 159
SA AI LNG + + + V A + T N++V +L E+ + L
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + S A VM DQ +G SR FGFV+F + A SA+ + G LG + A
Sbjct: 247 KTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
K + E+ + + + S Q +Y+ NL V L
Sbjct: 306 KKSEREEELRRKFEQERINRFEKS-----------------QGANLYLKNLDDSVDDEKL 348
Query: 280 HRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 321
F G +V + +GFGFV YS EA A+ N
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSL 114
+VYV N+ ++ E L++ F G + ++R + +GF+++ +AA A+ +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 115 NGRHLFGQPIKVNWAYASGQRED---------------TSGHFNIFVGDLSPEVTDATLF 159
NG L + V A +RE+ S N+++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
FS Y + + ++VM + + G SRGFGFV++ N ++A A++++ GK +G + + A
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 220 KGAGNNEDKQS 230
+ ED+++
Sbjct: 409 R----KEDRRA 415
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSA 107
F+ S ++Y+ N+ V + L+E+FS G V K++ + +GF+ Y + A
Sbjct: 326 FEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEA 385
Query: 108 AMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF 142
A+ +NG+ + +P+ + A ++ED H
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQ---RKEDRRAHL 417
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 46/272 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 114 LNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ +G N+F+ +L + + L F+ + +
Sbjct: 112 LNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G S+G+GFV + + A +AI + G L +++ + +D+QS
Sbjct: 168 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI----SKKDRQS 222
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ E +T +Y+ N+ P+VT+ + + F G
Sbjct: 223 -----------------------KFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-- 257
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAI 317
I + RD +GFGFV YSTH A A+
Sbjct: 258 ITSATLSRDPEGKSRGFGFVNYSTHESAQAAV 289
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R ++ +F NI++ ++ P+VT+ F + +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEIT 259
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + D + G+SRGFGFV++ + AQ+A++++ K + ++++ A K E+
Sbjct: 260 SATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELR 318
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 319 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFGPY- 358
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 359 -GTITSAKVMRD 369
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 47/276 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE +L E FS GP+ ++ R + Y ++++ A A+ +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + +
Sbjct: 72 MNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V+ D+ S+G+GFV F Q+ A+ AI+ + G L R++ G + ++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV-------GRFKSRKE 178
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+A EL + E +T VY+ N ++ L F G +
Sbjct: 179 REA----ELGARAKE----------------FTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
V+V D KGFGFV + H +A A+ N
Sbjct: 219 --SVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 31/283 (10%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRR 105
DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ +
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 149
Query: 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFA 160
+A AI +NG L + + V + +RE G N+++ + ++ D L
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKE 209
Query: 161 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
F Y +VM D G+S+GFGFVSF +DAQ A++++ GK + + + A K
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280
++Q+ + E K+ T Q +YV NL + L
Sbjct: 269 KV----ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLR 311
Query: 281 RHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 321
+ F G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 312 KEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ N + + L+E+F GP K++ D +GF+ + A A+ +
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 115 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 159
NG+ + G+ + V A +R+ D + N++V +L + D L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ + A
Sbjct: 312 KEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 220 K 220
+
Sbjct: 370 R 370
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
++YV N+ + + L++ F G + K++ + S +GF+ + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 116 GRHLFGQPIKVNWAYASGQRE 136
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 52/311 (16%)
Query: 30 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEG 85
+P +AP++ + S + P PS + S+YVG + VTE +L E+FSS G V
Sbjct: 23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVAS 80
Query: 86 CKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE---DT 138
++ R + Y +++Y + A+ LN + G+P ++ W+ QR+
Sbjct: 81 IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWS----QRDPALRK 136
Query: 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198
+G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + + A +
Sbjct: 137 TGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANN 195
Query: 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPEN 258
AI + G L +++ + +D+QS + E
Sbjct: 196 AIKHVNGMLLNDKKVFVGHHI----SKKDRQS-----------------------KFEEM 228
Query: 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEA 313
+T VY+ N+ EVT + + F G I + RD +GFGFV +STH A
Sbjct: 229 KANFTNVYIKNIDQEVTDEEFRKMFEKFGE--ITSATLSRDQEGKSRGFGFVNFSTHDSA 286
Query: 314 ALAIQMGNTTQ 324
A+ N +
Sbjct: 287 QAAVDEMNDKE 297
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F N+++ ++ EVTD F + +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + DQ+ G+SRGFGFV+F AQ+A++++ K + +++ A K E+
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 320 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFSPF- 359
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 360 -GTITSAKVMRD 370
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 62/225 (27%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ NI +VT+ +++F G + L R + +GF+++ SA A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + GQ + V A Y + + E S + N++V +L+ +V D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 160 ACFSVYPSCSDARVMWDQKT---------------------------------------- 179
FS + + + A+VM D T
Sbjct: 354 ELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTE 413
Query: 180 ----GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
G+S+GFGFV F + +A A+ ++ + + + + A +
Sbjct: 414 KKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 458
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 51/315 (16%)
Query: 36 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----K 91
AP++ + S P P + S+YVG + VTE +L E+FSS G V ++ R +
Sbjct: 29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 87
Query: 92 DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGD 148
Y +++Y + A+ LN + G+P ++ W+ QR+ +G N+F+ +
Sbjct: 88 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKN 143
Query: 149 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208
L + + L F+ + + +V D+ G S+G+GFV + + A +AI + G L
Sbjct: 144 LDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
Query: 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 268
+++ + +D+QS + E +T VY+
Sbjct: 203 NDKKVFVGHHI----SKKDRQS-----------------------KFEEMKANFTNVYIK 235
Query: 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNT- 322
N+ +VT+ + F G I + RD +GFGFV +STH A A+ N
Sbjct: 236 NIDQDVTEEEFRELFEKFGE--ITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEK 293
Query: 323 ---TQSSYLFGKQMK 334
TQ Y+ Q K
Sbjct: 294 EIRTQKLYVGRAQKK 308
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F N+++ ++ +VT+ F + +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + DQ+ G+SRGFGFV+F + AQ+A++++ K + ++++ A K E+
Sbjct: 258 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 317 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFGPY- 356
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 357 -GTITSAKVMRD 367
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ NI VTE +E+F G + L R + +GF+++ SA A+ +
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEM 290
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + Q + V A Y + + E S + N++V +L+ +V D L
Sbjct: 291 NEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 350
Query: 160 ACFSVYPSCSDARVMWDQKTGRSR 183
F Y + + A+VM D R++
Sbjct: 351 ELFGPYGTITSAKVMRDTNIERTQ 374
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 46/279 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG ++ V E L E+FS G V ++ R K Y +++Y AI
Sbjct: 68 SLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEE 127
Query: 114 LNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ + SG NIF+ +L P + + L FS +
Sbjct: 128 LNYTPVEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILS 183
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D G+S+ FGFV + ++ AQ+AI + G L R++ G + K+
Sbjct: 184 VKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV-------GKHVSKKD 235
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
++K E YT +YV N+ T+ + F G
Sbjct: 236 RESK--------------------LEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-- 273
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 324
I + +++D KGFGFV + H AA A++ N +
Sbjct: 274 ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKE 312
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 35/282 (12%)
Query: 52 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS RS +++ N+H + L + FS+ G + K+ D +GF+HY
Sbjct: 146 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETE 205
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLF 159
+A AI S+NG L + + V + RE + + NI+V ++ T+
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F+ + + + D + G+S+GFGFV+F + A A+ +L K + ++I A
Sbjct: 266 ELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 220 KGAGNNED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278
K E+ K+ +A + +L+ Q ++V NL ++
Sbjct: 325 KKRERTEELKKQYEAVRLEKLSKY------------------QGVNLFVKNLDEQIDSEK 366
Query: 279 LHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 317
L F G +V V + KGFGFV +ST EA AI
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
++YV NI TE +E+F+ G + L + + +GF+++ + +AA A+ L
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEEL 308
Query: 115 NGRHLFGQPIKVNWAYASGQR-EDTSGHF--------------NIFVGDLSPEVTDATLF 159
N + + GQ I V A +R E+ + N+FV +L ++ L
Sbjct: 309 NDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLE 368
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + + ++VM D G+S+GFGFV F ++A AI ++ + + + + A
Sbjct: 369 EEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
Query: 220 K 220
+
Sbjct: 428 R 428
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 48/292 (16%)
Query: 43 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGF 98
PSG P T S+YVG + VTE +L E+F+S GPV ++ R + Y +
Sbjct: 72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 99 IHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTD 155
+++ + A+ LN + G+P ++ W+ QR+ + G N+F+ +L P + +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215
L FS + +V D+ G ++G+GFV F + + A +AI + G L +++
Sbjct: 182 KALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 275
G++ ++ +K EA + N +T VY+ NL E+T
Sbjct: 241 -------GHHVSRRERQSK------------------VEALKAN--FTNVYIKNLDTEIT 273
Query: 276 QLDLHRHFHSLGAGV-IEEVRVQRDK--GFGFVRYSTHAEAALAIQMGNTTQ 324
+ + F G + V+ Q DK GFGFV Y+ H A A+ N +
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKE 325
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 37/287 (12%)
Query: 52 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDR 104
DPS + +V++ N+ + L + FS+ G + CK+ + YGF+H+
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSV 218
Query: 105 RSAAMAILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLF 159
SA AI +NG L + + V + +R E +F N+++ +L E+T+
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
F + + ++ DQ + RGFGFV++ N + AQ A+++L K +++ A
Sbjct: 279 DLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQ 337
Query: 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDL 279
K E+ + + +E N Q +++ NL EV L
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKY-----------------QGVNLFIKNLQDEVDDERL 380
Query: 280 HRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
F + G I ++ D KGFGFV Y+T EA A+ N
Sbjct: 381 KAEFSAF--GTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK-SSYGFIHYFDRRSAAMAILSL 114
+VY+ N+ T++TE ++F G + L++ DK +GF++Y + A A+ L
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 115 NGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLF 159
N + G+ + V A +RE+ N+F+ +L EV D L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219
A FS + + + A++M D++ G+S+GFGFV + ++A A+ ++ + L + + A
Sbjct: 382 AEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 220 K 220
+
Sbjct: 441 R 441
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEA 313
P ++YVG L P VT+ L F+S+G + +RV RD G+ +V + +
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGP--VASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 314 ALAIQMGNTTQSSYLFGKQMKCSWGSK 340
A+ N T + G+ + W +
Sbjct: 135 EKALDELNYT---LIKGRPCRIMWSQR 158
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 47/276 (17%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 114 LNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
+N + G+ I++ W+ QR+ SG N+F+ +L + + TL+ FS +
Sbjct: 71 MNFDIIKGKSIRLMWS----QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
++VM D + S+G+ FV F+NQ A AI ++ GK L C N +D+++
Sbjct: 127 SKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDREA 180
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
EL + +SE +T VY+ N ++ L F G +
Sbjct: 181 -------ELRSKASE----------------FTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321
V+V D KGFGFV + +H A A++ N
Sbjct: 218 --SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 31/271 (11%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLN 115
+V++ N+ + L E FS+ G + K++ D+ S Y F+H+ ++ +A AI +N
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
Query: 116 GRHLFGQPIKVNWAYASGQRE-----DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
G+ L G + V RE S N+++ + ++ D L FS Y
Sbjct: 159 GKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS 218
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K ++
Sbjct: 219 VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV-----ERQ 272
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
++ K + E G Q +Y+ NL + L F S G+
Sbjct: 273 AELKQMFEQLKRERIRG------------CQGVKLYIKNLDDTIDDEKLRNEFSSFGS-- 318
Query: 291 IEEVRVQRD----KGFGFVRYSTHAEAALAI 317
I V+V ++ KGFG + +S+ +A A+
Sbjct: 319 ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 349
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILS 113
+VY+ N + + L++VFS G K++ D S +GF+ + +A A+
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 114 LNGRHLFGQPIKVNWA-------------YASGQREDTSG--HFNIFVGDLSPEVTDATL 158
+NGR + GQ I V A + +RE G +++ +L + D L
Sbjct: 250 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKL 309
Query: 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211
FS + S S +VM Q+ G+S+GFG + F + +DA A+ ++ G+ LGS+
Sbjct: 310 RNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSK 360
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 46/279 (16%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILS 113
S+YVG + VTE +L E+FSS G V ++ R + Y +++Y D A+
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 170
LN + G+P ++ W+ QR+ +G N+F+ +L + + L F+ + +
Sbjct: 103 LNYTLIKGKPCRIMWS----QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 171 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 230
+V D+ G S+G+GFV + + A +AI + G L +++ + +D+QS
Sbjct: 159 CKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI----SKKDRQS 213
Query: 231 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290
+ E +T +Y+ N+ PEV + + F G
Sbjct: 214 -----------------------KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-- 248
Query: 291 IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 324
I + RD +GFGFV +STH A A++ N +
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKE 287
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F NI++ ++ PEV D F + +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + D + G+SRGFGFV+F + AQ+A+ ++ K + S+++ A K E+
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ + S G +YV NL +V L F
Sbjct: 310 KQYEAAR----MEKASKYQG---------------VNLYVKNLTDDVDDDKLRELFGPY- 349
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 350 -GTITSAKVMRD 360
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 229 QSSDAKSVVELTNGSSEDGK--ETTNTEAP--ENNPQYTTVYVGNLAPEVTQLDLHRHFH 284
++S + E TNG+ ++ E T EAP + P ++YVG L P VT+ L+ F
Sbjct: 4 ETSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFS 63
Query: 285 SLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338
S+G + +RV RD G+ +V Y+ A A+ N T + GK + W
Sbjct: 64 SIGQ--VASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYT---LIKGKPCRIMWS 118
Query: 339 SK 340
+
Sbjct: 119 QR 120
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILS 113
++YVG + +V+E +L E+ GPV + + + +GF+ + A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 114 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-R 172
LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
+M D +G S+GF F++F + + + +A+ + G++L +R I ++A K
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 44/203 (21%)
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
I+VG L +V+++ L+ + D+ T +GFGFV F ++DA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
L + I+ N A+ N + N
Sbjct: 75 NMIKLYGKPIKVNKASA----------------------------HEKNMDVGAN----- 101
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317
++VGNL PEV + L+ F + G +++ ++ RD KGF F+ +++ + A+
Sbjct: 102 -IFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 318 QMGNTTQSSYLFGKQMKCSWGSK 340
+ N +L + + S+ K
Sbjct: 160 EAMN---GQFLCNRAITVSYAFK 179
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAIL 112
+++VGN+ +V E LL + FS+ G + I +D S + FI++ ++ A+
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 113 SLNGRHLFGQPIKVNWAY---ASGQREDTS 139
++NG+ L + I V++A+ + G+R T+
Sbjct: 161 AMNGQFLCNRAITVSYAFKRDSKGERHGTA 190
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 52/306 (16%)
Query: 35 AAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR 90
+AP++ + S + P PS + S+YVG + VTE +L E+FSS G V ++ R
Sbjct: 28 SAPEVTAVESAS--PSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 85
Query: 91 ----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFN 143
+ Y +++Y + A+ LN + G+P ++ W+ QR+ +G N
Sbjct: 86 DAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWS----QRDPALRKTGQGN 141
Query: 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203
+F+ +L + + L F+ + + +V D+ G S+G+GFV + + A +AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHV 200
Query: 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263
G L +++ + +D+QS + E +T
Sbjct: 201 NGMLLNDKKVFVGHHI----SKKDRQS-----------------------KFEEMKANFT 233
Query: 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQ 318
VY+ N+ EVT + + F G I + RD +GFGFV +STH A A+
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGE--ITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Query: 319 MGNTTQ 324
N +
Sbjct: 292 EMNDKE 297
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 32/252 (12%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSL 114
+V++ N+ + L + F++ G + CK+ + + YGF+HY +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 115 NGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCS 169
NG L + + V + R E+ +F N+++ ++ EVTD F + +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED-- 227
A + DQ+ G+SRGFGFV+F AQ+A++++ K + +++ A K E+
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 228 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287
KQ A+ L S G +YV NL +V L F
Sbjct: 320 KQYEAAR----LEKASKYQG---------------VNLYVKNLTDDVDDEKLRELFSPF- 359
Query: 288 AGVIEEVRVQRD 299
G I +V RD
Sbjct: 360 -GTITSAKVMRD 370
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 64/227 (28%)
Query: 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSL 114
+VY+ NI +VT+ +++F G + L R + +GF+++ SA A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 115 NGRHLFGQPIKVNWA-------------YASGQREDTSGH--FNIFVGDLSPEVTDATLF 159
N + + GQ + V A Y + + E S + N++V +L+ +V D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 160 ACFSVYPSCSDARVMWDQKT---------------------------------------- 179
FS + + + A+VM D T
Sbjct: 354 ELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKK 413
Query: 180 ------GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220
G+S+GFGFV F + +A A+ ++ + + + + A +
Sbjct: 414 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 460
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,851,507
Number of Sequences: 539616
Number of extensions: 7125274
Number of successful extensions: 64997
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 363
Number of HSP's that attempted gapping in prelim test: 45588
Number of HSP's gapped (non-prelim): 14054
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)