Query 014955
Match_columns 415
No_of_seqs 320 out of 3130
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 01:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.8E-46 2.1E-50 349.7 32.8 279 56-342 3-350 (352)
2 KOG0145 RNA-binding protein EL 100.0 9.3E-43 2E-47 289.0 26.2 278 56-341 41-358 (360)
3 KOG0148 Apoptosis-promoting RN 100.0 2.6E-42 5.7E-47 288.1 21.8 237 54-345 4-242 (321)
4 KOG0117 Heterogeneous nuclear 100.0 3.8E-41 8.3E-46 299.8 26.3 245 54-344 81-334 (506)
5 TIGR01645 half-pint poly-U bin 100.0 4.4E-40 9.6E-45 317.3 34.2 166 55-220 106-283 (612)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.4E-40 5.2E-45 322.2 32.7 276 55-341 1-351 (481)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-40 2.5E-45 321.2 29.0 243 55-343 57-309 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.8E-40 1.5E-44 319.0 33.4 279 55-341 95-480 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-40 2.7E-45 332.6 29.0 247 58-341 2-261 (562)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-40 3.9E-45 331.5 29.4 264 55-341 87-364 (562)
11 TIGR01622 SF-CC1 splicing fact 100.0 5.8E-38 1.3E-42 306.6 33.2 282 53-340 86-447 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.7E-38 1.2E-42 311.0 32.7 272 53-339 172-500 (509)
13 KOG0144 RNA-binding protein CU 100.0 1.3E-36 2.9E-41 269.6 20.5 167 54-223 32-208 (510)
14 KOG0127 Nucleolar protein fibr 100.0 3.2E-35 7E-40 267.8 26.1 313 57-376 6-430 (678)
15 TIGR01645 half-pint poly-U bin 100.0 5E-32 1.1E-36 261.6 24.4 176 140-344 106-287 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 9E-32 2E-36 247.7 22.9 169 52-223 103-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 7.8E-32 1.7E-36 249.2 22.0 237 58-340 3-245 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 5.2E-31 1.1E-35 229.1 21.7 162 57-218 114-287 (544)
19 TIGR01659 sex-lethal sex-letha 100.0 5.4E-31 1.2E-35 242.6 20.7 167 137-343 103-277 (346)
20 KOG0123 Polyadenylate-binding 100.0 4.8E-30 1E-34 237.3 18.5 257 59-339 79-347 (369)
21 KOG0144 RNA-binding protein CU 100.0 2.3E-30 4.9E-35 230.1 13.4 170 138-343 31-208 (510)
22 KOG0110 RNA-binding protein (R 100.0 6.9E-29 1.5E-33 234.0 19.8 254 55-341 384-693 (725)
23 KOG0148 Apoptosis-promoting RN 100.0 1.5E-28 3.3E-33 205.9 17.7 162 56-223 62-240 (321)
24 KOG1190 Polypyrimidine tract-b 100.0 3.2E-27 7E-32 208.6 25.6 280 53-340 147-490 (492)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4E-28 8.7E-33 229.5 21.4 163 140-342 2-172 (352)
26 KOG0127 Nucleolar protein fibr 100.0 2E-28 4.3E-33 223.7 16.7 265 56-320 117-516 (678)
27 KOG0147 Transcriptional coacti 100.0 3.2E-28 6.9E-33 223.6 15.7 281 53-339 176-526 (549)
28 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-26 2.8E-31 226.7 23.8 176 138-342 86-267 (457)
29 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-26 3.3E-31 223.6 20.8 218 55-287 137-366 (578)
30 KOG0131 Splicing factor 3b, su 99.9 3.6E-27 7.8E-32 186.5 12.7 170 54-225 7-181 (203)
31 KOG0131 Splicing factor 3b, su 99.9 6.7E-27 1.5E-31 184.9 12.6 169 139-345 7-181 (203)
32 KOG0117 Heterogeneous nuclear 99.9 2.7E-25 5.8E-30 198.9 20.6 197 101-346 41-253 (506)
33 KOG0145 RNA-binding protein EL 99.9 5E-26 1.1E-30 189.6 14.4 167 138-344 38-212 (360)
34 KOG4212 RNA-binding protein hn 99.9 6.9E-24 1.5E-28 189.0 25.3 162 54-216 42-289 (608)
35 KOG0124 Polypyrimidine tract-b 99.9 1.9E-25 4.1E-30 194.7 12.2 171 142-341 114-290 (544)
36 KOG1190 Polypyrimidine tract-b 99.9 2E-23 4.4E-28 184.7 18.8 278 53-341 25-373 (492)
37 KOG0109 RNA-binding protein LA 99.9 1.3E-24 2.8E-29 184.2 10.4 148 58-222 4-151 (346)
38 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.1E-23 8.9E-28 204.9 20.0 167 54-220 293-501 (509)
39 KOG0109 RNA-binding protein LA 99.9 2.9E-23 6.3E-28 176.1 11.0 149 142-342 3-151 (346)
40 KOG0110 RNA-binding protein (R 99.9 1.3E-22 2.8E-27 191.9 14.6 255 55-339 226-596 (725)
41 KOG0146 RNA-binding protein ET 99.9 3.8E-22 8.2E-27 167.1 10.6 171 55-225 18-369 (371)
42 KOG4211 Splicing factor hnRNP- 99.9 1.1E-19 2.5E-24 165.4 23.0 274 55-337 9-354 (510)
43 KOG0146 RNA-binding protein ET 99.9 1.9E-21 4.1E-26 163.0 10.5 213 121-342 2-366 (371)
44 KOG0120 Splicing factor U2AF, 99.9 7.9E-21 1.7E-25 177.7 15.7 265 55-338 174-489 (500)
45 KOG1456 Heterogeneous nuclear 99.9 5E-19 1.1E-23 155.3 24.2 278 53-342 28-364 (494)
46 KOG4206 Spliceosomal protein s 99.8 1.1E-19 2.3E-24 150.4 17.4 192 140-339 8-220 (221)
47 KOG0105 Alternative splicing f 99.8 1.7E-18 3.7E-23 137.5 19.1 169 140-323 5-173 (241)
48 KOG1456 Heterogeneous nuclear 99.8 8.7E-18 1.9E-22 147.5 23.9 262 55-324 119-471 (494)
49 KOG0105 Alternative splicing f 99.8 3E-19 6.5E-24 141.8 12.7 147 55-208 5-175 (241)
50 KOG4206 Spliceosomal protein s 99.8 1.4E-18 3.1E-23 143.7 15.3 160 55-219 8-220 (221)
51 KOG4205 RNA-binding protein mu 99.8 2.1E-19 4.6E-24 160.5 10.7 169 55-225 5-180 (311)
52 KOG0147 Transcriptional coacti 99.8 7.8E-20 1.7E-24 168.7 6.7 182 138-346 176-363 (549)
53 KOG4205 RNA-binding protein mu 99.8 1.4E-18 2.9E-23 155.4 11.0 168 140-343 5-178 (311)
54 KOG1457 RNA binding protein (c 99.8 2.9E-17 6.2E-22 134.6 14.6 153 52-208 30-273 (284)
55 KOG1457 RNA binding protein (c 99.8 3.9E-17 8.4E-22 133.8 14.7 184 140-323 33-271 (284)
56 PLN03134 glycine-rich RNA-bind 99.7 6.6E-17 1.4E-21 130.5 13.1 85 139-223 32-116 (144)
57 KOG1365 RNA-binding protein Fu 99.7 5.6E-17 1.2E-21 142.9 11.0 271 55-336 59-357 (508)
58 KOG4212 RNA-binding protein hn 99.7 3.3E-15 7.2E-20 134.0 17.9 194 140-339 43-292 (608)
59 KOG0106 Alternative splicing f 99.7 1.8E-16 3.9E-21 132.9 8.8 165 142-337 2-167 (216)
60 KOG4211 Splicing factor hnRNP- 99.7 2.8E-15 6E-20 137.1 15.3 164 139-337 8-178 (510)
61 PLN03134 glycine-rich RNA-bind 99.6 2.7E-15 5.9E-20 121.2 12.4 78 261-343 33-116 (144)
62 KOG1548 Transcription elongati 99.6 6E-15 1.3E-19 128.9 15.1 193 139-337 132-348 (382)
63 KOG0106 Alternative splicing f 99.6 7.2E-16 1.6E-20 129.3 7.3 149 58-218 3-168 (216)
64 KOG1548 Transcription elongati 99.6 2.4E-14 5.1E-19 125.2 16.6 165 53-221 131-352 (382)
65 KOG0122 Translation initiation 99.6 3.3E-15 7.1E-20 124.5 9.6 83 139-221 187-269 (270)
66 PF00076 RRM_1: RNA recognitio 99.6 1.8E-14 3.9E-19 102.2 9.2 70 144-214 1-70 (70)
67 KOG0125 Ataxin 2-binding prote 99.6 5.4E-15 1.2E-19 128.2 7.7 80 53-132 93-174 (376)
68 PF00076 RRM_1: RNA recognitio 99.5 1.8E-14 3.9E-19 102.2 7.0 67 59-125 1-70 (70)
69 PLN03120 nucleic acid binding 99.5 4.9E-14 1.1E-18 121.6 10.1 77 56-133 4-81 (260)
70 KOG0121 Nuclear cap-binding pr 99.5 4.1E-14 8.8E-19 105.9 7.1 81 140-220 35-115 (153)
71 KOG0126 Predicted RNA-binding 99.5 2.2E-15 4.8E-20 119.7 0.4 100 122-221 16-115 (219)
72 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 99.5 9.1 83 50-132 12-95 (124)
73 KOG0107 Alternative splicing f 99.5 6E-14 1.3E-18 111.1 8.4 79 55-134 9-87 (195)
74 KOG0113 U1 small nuclear ribon 99.5 8.5E-14 1.8E-18 119.4 9.9 94 128-221 88-181 (335)
75 KOG0121 Nuclear cap-binding pr 99.5 5E-14 1.1E-18 105.4 7.1 77 54-130 34-114 (153)
76 PLN03120 nucleic acid binding 99.5 4E-13 8.7E-18 116.0 13.6 76 263-344 5-83 (260)
77 KOG0125 Ataxin 2-binding prote 99.5 2E-13 4.3E-18 118.6 11.6 78 259-341 93-174 (376)
78 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.6E-18 97.1 9.3 70 144-214 1-70 (70)
79 KOG4207 Predicted splicing fac 99.5 5.2E-14 1.1E-18 114.3 6.6 85 137-221 9-93 (256)
80 PLN03213 repressor of silencin 99.5 4.7E-14 1E-18 128.6 6.7 76 56-131 10-87 (759)
81 KOG4660 Protein Mei2, essentia 99.5 1.1E-12 2.3E-17 122.2 15.6 160 53-221 72-250 (549)
82 KOG0114 Predicted RNA-binding 99.5 2.7E-13 5.8E-18 97.6 8.6 72 262-338 18-92 (124)
83 PF14259 RRM_6: RNA recognitio 99.5 1.9E-13 4.1E-18 96.8 7.2 67 59-125 1-70 (70)
84 COG0724 RNA-binding proteins ( 99.5 1.2E-12 2.6E-17 120.0 13.8 145 141-299 115-260 (306)
85 KOG0149 Predicted RNA-binding 99.4 1.6E-13 3.5E-18 114.2 6.9 80 140-220 11-90 (247)
86 KOG0107 Alternative splicing f 99.4 2.9E-13 6.3E-18 107.3 7.3 79 140-223 9-87 (195)
87 KOG0120 Splicing factor U2AF, 99.4 2.4E-12 5.3E-17 121.2 14.5 166 55-220 288-491 (500)
88 KOG0122 Translation initiation 99.4 1.1E-12 2.4E-17 109.6 10.4 76 261-341 188-269 (270)
89 KOG0108 mRNA cleavage and poly 99.4 3.5E-13 7.5E-18 126.2 7.4 82 142-223 19-100 (435)
90 COG0724 RNA-binding proteins ( 99.4 3.2E-12 7E-17 117.1 12.9 121 56-176 115-260 (306)
91 PLN03121 nucleic acid binding 99.4 2.6E-12 5.7E-17 109.0 9.7 76 55-131 4-80 (243)
92 KOG4207 Predicted splicing fac 99.4 2.3E-12 4.9E-17 104.8 8.5 79 260-343 11-95 (256)
93 KOG0111 Cyclophilin-type pepti 99.4 6.3E-13 1.4E-17 109.0 5.2 85 140-224 9-93 (298)
94 PLN03213 repressor of silencin 99.4 3.1E-12 6.7E-17 116.9 9.4 78 139-220 8-87 (759)
95 smart00362 RRM_2 RNA recogniti 99.3 9.8E-12 2.1E-16 88.2 9.2 71 143-215 1-71 (72)
96 PLN03121 nucleic acid binding 99.3 1.2E-11 2.7E-16 105.0 11.1 74 261-340 4-80 (243)
97 PF13893 RRM_5: RNA recognitio 99.3 1E-11 2.2E-16 83.5 7.8 55 279-338 1-56 (56)
98 smart00362 RRM_2 RNA recogniti 99.3 1.4E-11 3.1E-16 87.3 9.0 68 264-336 1-72 (72)
99 smart00360 RRM RNA recognition 99.3 1.1E-11 2.3E-16 87.6 8.2 71 146-216 1-71 (71)
100 KOG1365 RNA-binding protein Fu 99.3 8.3E-12 1.8E-16 110.6 9.0 162 56-219 161-360 (508)
101 KOG0149 Predicted RNA-binding 99.3 1.1E-11 2.5E-16 103.3 9.3 75 260-340 10-90 (247)
102 KOG0130 RNA-binding protein RB 99.3 6.3E-12 1.4E-16 95.1 6.9 85 139-223 70-154 (170)
103 PF13893 RRM_5: RNA recognitio 99.3 7.8E-12 1.7E-16 84.0 6.5 56 73-129 1-56 (56)
104 KOG0111 Cyclophilin-type pepti 99.3 3.7E-12 8E-17 104.5 5.2 83 261-348 9-97 (298)
105 cd00590 RRM RRM (RNA recogniti 99.3 2.7E-11 5.8E-16 86.4 8.7 71 58-128 1-74 (74)
106 KOG0113 U1 small nuclear ribon 99.3 3E-11 6.4E-16 104.0 10.0 79 258-341 97-181 (335)
107 smart00360 RRM RNA recognition 99.3 1.9E-11 4.2E-16 86.3 7.6 67 61-127 1-71 (71)
108 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.2E-16 93.1 6.9 81 258-343 68-154 (170)
109 KOG4307 RNA binding protein RB 99.2 8.4E-11 1.8E-15 111.8 12.4 190 141-337 311-510 (944)
110 cd00590 RRM RRM (RNA recogniti 99.2 9.3E-11 2E-15 83.6 9.7 74 143-217 1-74 (74)
111 KOG4454 RNA binding protein (R 99.2 3E-12 6.4E-17 105.1 1.8 144 53-209 6-151 (267)
112 KOG0129 Predicted RNA-binding 99.2 1.7E-10 3.6E-15 106.9 13.3 150 53-202 256-432 (520)
113 smart00361 RRM_1 RNA recogniti 99.2 6.1E-11 1.3E-15 83.5 8.1 61 155-215 2-69 (70)
114 KOG0128 RNA-binding protein SA 99.2 2.8E-12 6E-17 124.9 0.8 227 56-340 571-814 (881)
115 KOG4307 RNA binding protein RB 99.2 6E-10 1.3E-14 106.2 14.7 159 57-218 312-511 (944)
116 KOG0128 RNA-binding protein SA 99.2 1.1E-11 2.3E-16 120.9 3.1 143 57-220 668-814 (881)
117 KOG0226 RNA-binding proteins [ 99.2 3.7E-11 8E-16 101.1 5.2 161 59-219 99-268 (290)
118 KOG0132 RNA polymerase II C-te 99.1 7.4E-11 1.6E-15 113.7 7.5 106 56-163 421-528 (894)
119 KOG0126 Predicted RNA-binding 99.1 4.8E-12 1E-16 100.9 -0.6 74 263-341 36-115 (219)
120 KOG0108 mRNA cleavage and poly 99.1 9.7E-11 2.1E-15 109.9 7.3 78 57-134 19-100 (435)
121 KOG0132 RNA polymerase II C-te 99.1 1.6E-10 3.5E-15 111.4 8.4 80 261-345 420-499 (894)
122 KOG0153 Predicted RNA-binding 99.1 4E-10 8.7E-15 99.2 9.0 81 256-340 222-302 (377)
123 KOG0415 Predicted peptidyl pro 99.1 1.8E-10 3.9E-15 101.3 5.6 84 137-220 235-318 (479)
124 KOG0129 Predicted RNA-binding 99.0 7.8E-09 1.7E-13 96.1 15.5 163 139-319 257-432 (520)
125 KOG0112 Large RNA-binding prot 99.0 5.3E-10 1.1E-14 109.7 5.9 162 139-343 370-533 (975)
126 KOG4208 Nucleolar RNA-binding 99.0 2.8E-09 6E-14 87.4 8.3 83 139-221 47-130 (214)
127 smart00361 RRM_1 RNA recogniti 99.0 2.3E-09 4.9E-14 75.5 6.6 57 70-126 2-69 (70)
128 KOG4454 RNA binding protein (R 98.9 2.7E-10 5.9E-15 93.7 0.5 133 139-323 7-148 (267)
129 KOG0153 Predicted RNA-binding 98.9 5E-09 1.1E-13 92.4 8.1 77 53-131 225-302 (377)
130 KOG0226 RNA-binding proteins [ 98.8 5E-09 1.1E-13 88.4 6.0 162 142-336 97-265 (290)
131 KOG0415 Predicted peptidyl pro 98.8 6.5E-09 1.4E-13 91.7 6.8 77 55-131 238-318 (479)
132 KOG0112 Large RNA-binding prot 98.8 6.5E-09 1.4E-13 102.3 6.7 160 52-222 368-532 (975)
133 KOG4660 Protein Mei2, essentia 98.8 5.6E-09 1.2E-13 97.8 5.9 182 134-340 68-249 (549)
134 KOG4210 Nuclear localization s 98.8 9.9E-09 2.1E-13 92.2 5.9 167 55-222 87-265 (285)
135 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.9E-08 6.2E-13 92.9 8.2 82 139-220 403-484 (940)
136 KOG0151 Predicted splicing reg 98.7 5E-08 1.1E-12 93.7 9.7 81 257-342 169-258 (877)
137 KOG4210 Nuclear localization s 98.7 2.2E-08 4.8E-13 90.0 5.1 173 140-342 87-265 (285)
138 KOG0151 Predicted splicing reg 98.6 1E-07 2.2E-12 91.6 8.7 75 56-130 174-255 (877)
139 KOG4208 Nucleolar RNA-binding 98.6 1.4E-07 3E-12 77.6 7.8 74 263-340 50-129 (214)
140 PF04059 RRM_2: RNA recognitio 98.6 3.9E-07 8.4E-12 67.3 8.5 79 142-220 2-86 (97)
141 KOG0533 RRM motif-containing p 98.6 2.4E-07 5.1E-12 80.2 8.3 85 138-223 80-164 (243)
142 PF11608 Limkain-b1: Limkain b 98.5 7.3E-07 1.6E-11 62.4 8.4 70 263-340 3-76 (90)
143 KOG4661 Hsp27-ERE-TATA-binding 98.5 3.5E-07 7.6E-12 85.8 8.7 77 260-341 403-485 (940)
144 KOG0116 RasGAP SH3 binding pro 98.5 3.1E-07 6.8E-12 86.1 7.7 76 53-129 285-364 (419)
145 KOG0533 RRM motif-containing p 98.4 8.1E-07 1.8E-11 77.0 7.9 78 55-132 82-162 (243)
146 PF04059 RRM_2: RNA recognitio 98.4 2.7E-06 5.9E-11 62.8 8.4 78 263-340 2-86 (97)
147 KOG2193 IGF-II mRNA-binding pr 98.3 5.3E-08 1.1E-12 88.0 -1.7 149 142-339 2-155 (584)
148 KOG4209 Splicing factor RNPS1, 98.3 9.7E-07 2.1E-11 76.7 6.2 83 138-221 98-180 (231)
149 KOG0116 RasGAP SH3 binding pro 98.3 2E-06 4.3E-11 80.7 6.8 78 142-220 289-366 (419)
150 KOG2193 IGF-II mRNA-binding pr 98.2 4.4E-07 9.4E-12 82.2 1.6 154 58-221 3-157 (584)
151 KOG4676 Splicing factor, argin 98.2 2.2E-06 4.9E-11 77.0 5.8 177 143-323 9-211 (479)
152 PF11608 Limkain-b1: Limkain b 98.2 7.6E-06 1.6E-10 57.4 6.7 69 58-132 4-77 (90)
153 KOG4676 Splicing factor, argin 98.2 1.2E-06 2.5E-11 78.8 3.1 147 57-209 8-214 (479)
154 PF08777 RRM_3: RNA binding mo 98.0 1.4E-05 3.1E-10 60.6 6.3 58 263-322 2-59 (105)
155 KOG4209 Splicing factor RNPS1, 97.9 1.3E-05 2.8E-10 69.8 5.1 78 54-132 99-180 (231)
156 PF08777 RRM_3: RNA binding mo 97.9 2.7E-05 5.9E-10 59.0 5.3 59 57-117 2-60 (105)
157 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.1E-05 1.8E-09 48.6 5.3 52 263-317 2-53 (53)
158 KOG0115 RNA-binding protein p5 97.7 7.5E-05 1.6E-09 63.8 6.0 89 106-205 6-94 (275)
159 COG5175 MOT2 Transcriptional r 97.7 9.6E-05 2.1E-09 65.4 6.4 73 263-340 115-202 (480)
160 KOG1995 Conserved Zn-finger pr 97.6 6.2E-05 1.4E-09 67.6 3.8 85 138-222 63-155 (351)
161 COG5175 MOT2 Transcriptional r 97.5 0.00035 7.7E-09 61.9 8.0 79 142-220 115-202 (480)
162 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00018 3.8E-09 47.0 4.7 52 57-111 2-53 (53)
163 KOG1855 Predicted RNA-binding 97.5 9.7E-05 2.1E-09 67.6 3.7 65 54-118 229-310 (484)
164 KOG2416 Acinus (induces apopto 97.4 0.00015 3.2E-09 69.1 4.5 86 254-340 436-521 (718)
165 KOG1996 mRNA splicing factor [ 97.4 0.00041 8.9E-09 60.4 6.5 65 155-219 300-365 (378)
166 KOG1855 Predicted RNA-binding 97.4 0.00023 5E-09 65.2 4.9 63 259-323 228-309 (484)
167 KOG3152 TBP-binding protein, a 97.3 0.00014 3E-09 62.2 2.4 72 141-212 74-157 (278)
168 KOG0115 RNA-binding protein p5 97.3 0.00064 1.4E-08 58.3 6.3 83 195-321 6-93 (275)
169 KOG1996 mRNA splicing factor [ 97.2 0.00071 1.5E-08 59.0 6.1 61 70-130 300-365 (378)
170 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0012 2.6E-08 49.2 6.5 72 56-129 6-89 (100)
171 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0018 3.9E-08 48.3 7.0 70 263-339 7-90 (100)
172 KOG3152 TBP-binding protein, a 97.2 0.00022 4.7E-09 61.0 2.4 67 57-123 75-157 (278)
173 KOG2314 Translation initiation 97.2 0.0019 4.1E-08 61.4 8.7 77 139-216 56-139 (698)
174 KOG2202 U2 snRNP splicing fact 97.1 0.00031 6.8E-09 60.3 2.6 59 71-129 83-145 (260)
175 KOG2135 Proteins containing th 97.1 0.0024 5.3E-08 59.5 8.3 76 261-342 371-447 (526)
176 KOG4849 mRNA cleavage factor I 97.1 0.0006 1.3E-08 60.8 4.1 77 140-216 79-157 (498)
177 KOG1995 Conserved Zn-finger pr 97.0 0.0017 3.7E-08 58.6 6.2 81 53-133 63-155 (351)
178 PF08675 RNA_bind: RNA binding 96.9 0.0044 9.5E-08 43.7 6.1 54 59-116 11-64 (87)
179 KOG2202 U2 snRNP splicing fact 96.8 0.00073 1.6E-08 58.1 2.4 58 277-339 83-146 (260)
180 PF10309 DUF2414: Protein of u 96.8 0.0081 1.8E-07 40.2 6.7 52 58-114 7-62 (62)
181 PF08952 DUF1866: Domain of un 96.8 0.0086 1.9E-07 47.5 7.9 74 258-339 23-105 (146)
182 PF08952 DUF1866: Domain of un 96.5 0.017 3.8E-07 45.8 7.8 58 157-223 52-109 (146)
183 KOG4849 mRNA cleavage factor I 96.4 0.0057 1.2E-07 54.7 5.2 70 262-334 80-155 (498)
184 KOG2416 Acinus (induces apopto 96.4 0.0055 1.2E-07 58.8 5.3 77 52-130 440-520 (718)
185 PF10309 DUF2414: Protein of u 96.3 0.028 6.1E-07 37.6 7.0 56 263-320 6-62 (62)
186 KOG2591 c-Mpl binding protein, 96.2 0.015 3.3E-07 55.4 7.0 71 263-335 176-246 (684)
187 PF08675 RNA_bind: RNA binding 96.1 0.027 5.8E-07 39.8 6.2 54 264-321 10-63 (87)
188 PF15023 DUF4523: Protein of u 96.1 0.03 6.6E-07 43.8 7.1 73 53-129 83-159 (166)
189 KOG2314 Translation initiation 96.0 0.013 2.8E-07 56.0 5.8 70 263-337 59-140 (698)
190 PF04847 Calcipressin: Calcipr 95.6 0.035 7.6E-07 46.7 6.1 61 275-340 8-70 (184)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.014 3.1E-07 48.8 3.3 68 55-122 6-83 (176)
192 PF15023 DUF4523: Protein of u 95.0 0.16 3.4E-06 39.9 7.6 74 259-339 83-160 (166)
193 PF07576 BRAP2: BRCA1-associat 95.0 0.28 6.1E-06 37.4 8.8 65 143-209 15-80 (110)
194 PF07576 BRAP2: BRCA1-associat 94.5 0.57 1.2E-05 35.8 9.4 74 263-337 14-91 (110)
195 PF10567 Nab6_mRNP_bdg: RNA-re 94.3 2.8 6.2E-05 37.4 14.4 178 136-323 10-214 (309)
196 KOG2591 c-Mpl binding protein, 94.3 0.15 3.2E-06 49.1 7.0 92 108-215 151-246 (684)
197 KOG2068 MOT2 transcription fac 94.1 0.023 4.9E-07 51.2 1.3 79 142-221 78-163 (327)
198 KOG2253 U1 snRNP complex, subu 94.1 0.043 9.4E-07 53.7 3.2 69 55-128 39-107 (668)
199 KOG2135 Proteins containing th 93.9 0.034 7.4E-07 52.1 2.1 76 55-133 371-447 (526)
200 KOG2068 MOT2 transcription fac 93.9 0.026 5.6E-07 50.9 1.2 75 263-342 78-164 (327)
201 KOG4574 RNA-binding protein (c 93.8 0.044 9.6E-07 55.1 2.8 74 265-341 301-374 (1007)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.11 2.5E-06 43.4 4.7 81 140-220 6-97 (176)
203 KOG0804 Cytoplasmic Zn-finger 93.5 0.29 6.2E-06 46.0 7.2 69 53-121 71-142 (493)
204 PF04847 Calcipressin: Calcipr 93.4 0.26 5.6E-06 41.5 6.4 62 154-221 8-71 (184)
205 PF10567 Nab6_mRNP_bdg: RNA-re 93.4 3 6.5E-05 37.2 12.9 156 48-204 7-212 (309)
206 KOG4285 Mitotic phosphoprotein 93.3 0.48 1E-05 42.1 7.9 66 59-128 200-266 (350)
207 KOG4019 Calcineurin-mediated s 92.9 0.17 3.8E-06 41.4 4.4 78 263-345 11-94 (193)
208 PF11767 SET_assoc: Histone ly 92.7 0.7 1.5E-05 31.5 6.4 56 272-335 10-65 (66)
209 KOG2318 Uncharacterized conser 92.7 0.83 1.8E-05 44.4 9.1 131 53-221 171-308 (650)
210 PF11767 SET_assoc: Histone ly 92.5 0.68 1.5E-05 31.6 6.2 55 152-215 11-65 (66)
211 KOG0804 Cytoplasmic Zn-finger 91.8 0.54 1.2E-05 44.2 6.7 65 262-330 74-142 (493)
212 KOG4285 Mitotic phosphoprotein 91.8 0.38 8.2E-06 42.7 5.4 66 265-337 200-266 (350)
213 KOG4574 RNA-binding protein (c 90.8 0.16 3.5E-06 51.3 2.5 71 59-131 301-373 (1007)
214 PF03880 DbpA: DbpA RNA bindin 90.7 1 2.2E-05 31.6 5.9 61 272-338 11-74 (74)
215 KOG2253 U1 snRNP complex, subu 90.7 0.23 4.9E-06 49.0 3.2 75 255-337 33-107 (668)
216 PF07292 NID: Nmi/IFP 35 domai 90.2 0.46 1E-05 34.4 3.8 73 186-284 1-74 (88)
217 PF07292 NID: Nmi/IFP 35 domai 88.9 0.56 1.2E-05 34.0 3.4 66 97-162 1-73 (88)
218 PF03880 DbpA: DbpA RNA bindin 86.5 1.5 3.3E-05 30.7 4.5 58 67-129 12-74 (74)
219 KOG4410 5-formyltetrahydrofola 85.5 3.9 8.5E-05 36.2 7.2 52 260-312 328-379 (396)
220 KOG4410 5-formyltetrahydrofola 84.9 2 4.4E-05 37.9 5.2 52 54-106 328-379 (396)
221 KOG4369 RTK signaling protein 83.1 1.6 3.6E-05 46.1 4.5 22 266-287 2066-2087(2131)
222 KOG2891 Surface glycoprotein [ 82.5 0.9 2E-05 39.8 2.1 77 263-341 150-268 (445)
223 PF14111 DUF4283: Domain of un 80.6 2.7 5.8E-05 34.2 4.3 106 67-174 28-138 (153)
224 TIGR02542 B_forsyth_147 Bacter 80.5 3.9 8.6E-05 30.8 4.5 111 64-193 11-129 (145)
225 COG5624 TAF61 Transcription in 73.7 4.8 0.0001 37.5 4.1 13 275-287 459-471 (505)
226 KOG2318 Uncharacterized conser 72.5 19 0.00042 35.5 7.9 80 256-338 168-305 (650)
227 PF02166 Androgen_recep: Andro 63.9 2.3 4.9E-05 38.5 0.0 11 71-81 153-163 (423)
228 PF03468 XS: XS domain; Inter 62.8 11 0.00024 29.1 3.6 55 263-317 9-74 (116)
229 KOG4407 Predicted Rho GTPase-a 61.5 2.9 6.3E-05 44.9 0.2 9 58-66 413-421 (1973)
230 PF06752 E_Pc_C: Enhancer of P 61.3 9.7 0.00021 32.7 3.2 7 3-9 10-16 (230)
231 PF14111 DUF4283: Domain of un 61.0 9.2 0.0002 31.0 3.1 83 184-298 56-139 (153)
232 PF03468 XS: XS domain; Inter 60.8 11 0.00024 29.1 3.3 50 58-108 10-70 (116)
233 PF14893 PNMA: PNMA 60.4 6.4 0.00014 36.5 2.2 53 54-106 16-74 (331)
234 KOG4483 Uncharacterized conser 58.6 23 0.00049 33.2 5.3 54 57-113 392-446 (528)
235 KOG3982 Runt and related trans 58.5 1.6E+02 0.0035 27.5 12.2 11 70-80 98-108 (475)
236 KOG4483 Uncharacterized conser 57.4 29 0.00063 32.5 5.8 57 261-319 390-446 (528)
237 KOG1295 Nonsense-mediated deca 57.1 13 0.00028 34.7 3.6 65 56-120 7-78 (376)
238 PRK14548 50S ribosomal protein 56.4 42 0.00091 24.2 5.4 56 59-114 23-81 (84)
239 KOG2891 Surface glycoprotein [ 55.8 59 0.0013 28.9 7.2 67 142-208 150-247 (445)
240 KOG3982 Runt and related trans 54.0 17 0.00037 33.5 3.7 23 169-193 182-206 (475)
241 KOG2295 C2H2 Zn-finger protein 51.0 2.4 5.2E-05 41.1 -2.1 70 141-210 231-300 (648)
242 TIGR03636 L23_arch archaeal ri 50.8 62 0.0013 22.9 5.4 56 59-114 16-74 (77)
243 PRK10927 essential cell divisi 49.1 56 0.0012 29.9 6.2 63 55-121 246-311 (319)
244 KOG4019 Calcineurin-mediated s 48.6 30 0.00065 28.8 4.0 63 157-225 31-94 (193)
245 PRK14548 50S ribosomal protein 48.3 54 0.0012 23.6 4.9 55 265-320 23-81 (84)
246 KOG4592 Uncharacterized conser 45.7 9.6 0.00021 37.7 1.0 8 58-65 235-242 (728)
247 TIGR03636 L23_arch archaeal ri 45.5 70 0.0015 22.6 5.0 55 265-320 16-74 (77)
248 PF07530 PRE_C2HC: Associated 44.6 44 0.00095 23.0 3.8 63 156-221 2-65 (68)
249 KOG3878 Protein involved in ma 44.4 1E+02 0.0022 28.3 7.0 39 67-105 302-353 (469)
250 KOG4407 Predicted Rho GTPase-a 44.0 6.5 0.00014 42.4 -0.4 6 187-192 634-639 (1973)
251 PF02714 DUF221: Domain of unk 40.5 47 0.001 30.8 4.8 56 97-163 1-56 (325)
252 KOG3702 Nuclear polyadenylated 40.3 29 0.00064 34.8 3.3 73 142-215 512-584 (681)
253 smart00596 PRE_C2HC PRE_C2HC d 37.4 54 0.0012 22.5 3.3 63 156-221 2-65 (69)
254 KOG2295 C2H2 Zn-finger protein 36.9 8 0.00017 37.7 -1.0 66 57-122 232-301 (648)
255 PF15513 DUF4651: Domain of un 36.2 80 0.0017 21.2 3.8 19 156-174 9-27 (62)
256 PF02714 DUF221: Domain of unk 34.4 51 0.0011 30.6 3.9 33 303-340 1-33 (325)
257 PF08734 GYD: GYD domain; Int 32.2 1.6E+02 0.0034 21.5 5.4 46 70-115 22-68 (91)
258 KOG4008 rRNA processing protei 31.7 37 0.0008 29.5 2.2 34 261-296 39-72 (261)
259 PF14026 DUF4242: Protein of u 30.7 1.9E+02 0.0042 20.3 6.8 59 59-118 3-70 (77)
260 PF12829 Mhr1: Transcriptional 30.6 1.1E+02 0.0024 22.4 4.2 52 269-321 19-72 (91)
261 PF08734 GYD: GYD domain; Int 30.1 2.2E+02 0.0048 20.8 6.5 46 276-322 22-69 (91)
262 KOG2133 Transcriptional corepr 29.5 46 0.001 35.1 2.8 13 3-15 1162-1174(1229)
263 PF15053 Njmu-R1: Mjmu-R1-like 29.4 2.8E+02 0.0061 25.8 7.4 41 53-94 34-84 (353)
264 PF03439 Spt5-NGN: Early trans 29.0 1.1E+02 0.0023 22.0 4.0 35 289-323 32-67 (84)
265 PF14893 PNMA: PNMA 27.9 42 0.00092 31.2 2.1 50 263-312 19-74 (331)
266 COG0150 PurM Phosphoribosylami 27.6 30 0.00066 32.0 1.1 48 70-117 275-322 (345)
267 PF08544 GHMP_kinases_C: GHMP 27.3 2.2E+02 0.0047 19.8 6.0 44 71-115 37-80 (85)
268 COG5638 Uncharacterized conser 26.0 2.8E+02 0.0062 26.3 6.9 36 185-220 260-297 (622)
269 PF00403 HMA: Heavy-metal-asso 25.7 1.9E+02 0.0042 18.7 6.6 54 264-319 1-58 (62)
270 PF03249 TSA: Type specific an 24.9 34 0.00075 31.8 0.9 22 5-26 305-327 (503)
271 KOG1819 FYVE finger-containing 24.9 1.1E+02 0.0024 29.7 4.3 18 9-26 818-835 (990)
272 KOG1295 Nonsense-mediated deca 24.8 76 0.0016 29.8 3.1 60 263-323 8-75 (376)
273 cd04908 ACT_Bt0572_1 N-termina 24.8 2.2E+02 0.0047 18.9 6.9 44 70-113 15-59 (66)
274 PRK10629 EnvZ/OmpR regulon mod 24.7 3.5E+02 0.0076 21.3 7.4 68 264-337 37-107 (127)
275 KOG4213 RNA-binding protein La 24.4 91 0.002 26.0 3.1 54 56-113 111-169 (205)
276 COG5638 Uncharacterized conser 24.1 4.8E+02 0.01 24.9 8.0 34 302-338 260-295 (622)
277 COG5470 Uncharacterized conser 24.0 1.8E+02 0.0039 21.4 4.3 40 278-317 24-70 (96)
278 COG5193 LHP1 La protein, small 23.8 42 0.00091 31.6 1.3 61 141-201 174-244 (438)
279 KOG4365 Uncharacterized conser 23.2 15 0.00032 34.8 -1.7 75 143-218 5-79 (572)
280 KOG4008 rRNA processing protei 22.1 82 0.0018 27.5 2.6 32 54-85 38-69 (261)
281 KOG1546 Metacaspase involved i 21.9 6.5E+02 0.014 23.4 12.8 118 57-176 64-202 (362)
282 PF11411 DNA_ligase_IV: DNA li 21.4 70 0.0015 18.8 1.4 16 272-287 19-34 (36)
283 COG0445 GidA Flavin-dependent 20.7 4.1E+02 0.009 26.8 7.3 82 95-176 237-336 (621)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.8e-46 Score=349.68 Aligned_cols=279 Identities=28% Similarity=0.461 Sum_probs=222.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..+|||+|||.++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5679999999999999999999999999999999875 458999999999999999999999999999999999865
Q ss_pred cCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-
Q 014955 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS- 210 (415)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g- 210 (415)
... .....+|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.|+|..+.|
T Consensus 83 ~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 83 SSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 442 2345689999999999999999999999999999999988788999999999999999999999999998876
Q ss_pred -eeEEEEEccCCCCCCccccccc-------cccccccc------------C---------C------------------C
Q 014955 211 -RQIRCNWATKGAGNNEDKQSSD-------AKSVVELT------------N---------G------------------S 243 (415)
Q Consensus 211 -~~l~v~~a~~~~~~~~~~~~~~-------~~~~~~~~------------~---------~------------------~ 243 (415)
.+|.|.|+.............. ........ . . .
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 6788888765442211100000 00000000 0 0 0
Q ss_pred CcCCcCC-----------CCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEE
Q 014955 244 SEDGKET-----------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVR 306 (415)
Q Consensus 244 ~~~~~~~-----------~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~ 306 (415)
....... .....+.....+.+|||+|||+++++++|+++|++|| .|.++++.++ ||||||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--AVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeEcCCCCCccceEEEE
Confidence 0000000 0000011122335799999999999999999999999 8999999865 7999999
Q ss_pred eCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 307 YSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 307 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
|.+.++|.+|+..|||. .++||.|+|+|+.++.
T Consensus 318 F~~~~~A~~Ai~~lnG~---~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 318 MTNYDEAAMAILSLNGY---TLGNRVLQVSFKTNKA 350 (352)
T ss_pred ECCHHHHHHHHHHhCCC---EECCeEEEEEEccCCC
Confidence 99999999999999999 9999999999987653
No 2
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.3e-43 Score=288.99 Aligned_cols=278 Identities=29% Similarity=0.434 Sum_probs=227.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCC----ceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
...|.|.-||..+|+|||+.+|...|+|++|++++|+.+ ||+||.|.+++||++|+..|||..+..++|+|.|+.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 345889999999999999999999999999999999854 7999999999999999999999999999999999987
Q ss_pred cCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-
Q 014955 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS- 210 (415)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g- 210 (415)
.+.... ...|||++||+.++..||..+|++||.|..-+|+.|..+|.+||.+||+|+..++|++||..|||..-.|
T Consensus 121 Ss~~Ik---~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 121 SSDSIK---DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred Chhhhc---ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 765433 3589999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -eeEEEEEccCCCCCCcccccccc--cccccccCC----------------------CCc----CCcCCCCCCCCCCCCc
Q 014955 211 -RQIRCNWATKGAGNNEDKQSSDA--KSVVELTNG----------------------SSE----DGKETTNTEAPENNPQ 261 (415)
Q Consensus 211 -~~l~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~----------------------~~~----~~~~~~~~~~~~~~~~ 261 (415)
.+|.|+|+............... .+...+... .++ ..........+.....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 57999998765433221110000 000000000 000 0000011122333345
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
.++|||.||.++.+|.-|+++|.+|| .|..|++.|| |||+||++.+.++|..|+..|||+ .+++|.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFG--Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy---~lg~rvLQV 352 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFG--AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY---RLGDRVLQV 352 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCccc--ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc---cccceEEEE
Confidence 68999999999999999999999999 8999999987 899999999999999999999999 999999999
Q ss_pred eeCCCC
Q 014955 336 SWGSKP 341 (415)
Q Consensus 336 ~~a~~~ 341 (415)
+|..++
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 997654
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-42 Score=288.13 Aligned_cols=237 Identities=41% Similarity=0.732 Sum_probs=204.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
...|||||+||+.++||+-|..+|+..|+|.+++++.+ +|+|.|+..+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCcc
Confidence 35689999999999999999999999999999999877 55677766553
Q ss_pred CCC--CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 014955 134 QRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (415)
Q Consensus 134 ~~~--~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (415)
... ....+..+||+.|...++-++|++.|.+||+|.+.+|++|..|+++|||+||.|.+.++|+.||..|+|..+++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 322 223367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeee
Q 014955 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291 (415)
Q Consensus 212 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i 291 (415)
.|+-+|+.+|......+. .. -.+......+..++|||+||+..++|++|++.|+.|| .|
T Consensus 133 ~IRTNWATRKp~e~n~~~----lt---------------fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I 191 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKP----LT---------------FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--PI 191 (321)
T ss_pred eeeccccccCccccCCCC----cc---------------HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--cc
Confidence 999999998762221111 00 1111223445568999999999999999999999999 99
Q ss_pred EEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCCC
Q 014955 292 EEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPG 345 (415)
Q Consensus 292 ~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 345 (415)
.+||+.+++||+||.|.+.|+|..|+..+|+. +++|..++|+|+|......
T Consensus 192 ~EVRvFk~qGYaFVrF~tkEaAahAIv~mNnt---ei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 192 QEVRVFKDQGYAFVRFETKEAAAHAIVQMNNT---EIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred eEEEEecccceEEEEecchhhHHHHHHHhcCc---eeCceEEEEeccccCCCCC
Confidence 99999999999999999999999999999999 9999999999999765543
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=299.75 Aligned_cols=245 Identities=23% Similarity=0.393 Sum_probs=214.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCcccc-CCceeeec
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVNW 128 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~ 128 (415)
.-.+.|||+.||.++.|+||..+|++.|.|-+++++.++ ++|||||.|++.++|++|++.||+..|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 356789999999999999999999999999999999984 5799999999999999999999999885 89999987
Q ss_pred ccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCC-CceEEEEeecCC-CCCcceEEEEEEcCHHHHHHHHHHhC-C
Q 014955 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLT-G 205 (415)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~-~ 205 (415)
+. .+++|||+|+|+++++++|.+.+++.+ .|.+|.+..++. ..++||||||+|.+...|..|.+.|- +
T Consensus 161 Sv---------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 161 SV---------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred ee---------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 64 346999999999999999999999875 577777766543 45799999999999999999988873 3
Q ss_pred -ceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHh
Q 014955 206 -KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284 (415)
Q Consensus 206 -~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~ 284 (415)
+.++|..+.|.|+.+....... .....+.|||+||+.++|+|.|+++|+
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded------------------------------~ms~VKvLYVRNL~~~tTeE~lk~~F~ 281 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED------------------------------TMSKVKVLYVRNLMESTTEETLKKLFN 281 (506)
T ss_pred ceeecCCcceeeccCcccCCChh------------------------------hhhheeeeeeeccchhhhHHHHHHHHH
Confidence 5789999999999886543221 222336799999999999999999999
Q ss_pred hcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCC
Q 014955 285 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (415)
Q Consensus 285 ~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (415)
.|| .|++|+.++| ||||.|.++++|.+||+.+||+ .++|..|.|.+||+....
T Consensus 282 ~~G--~veRVkk~rD--YaFVHf~eR~davkAm~~~ngk---eldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 282 EFG--KVERVKKPRD--YAFVHFAEREDAVKAMKETNGK---ELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred hcc--ceEEeecccc--eeEEeecchHHHHHHHHHhcCc---eecCceEEEEecCChhhh
Confidence 999 9999999977 9999999999999999999999 999999999999976543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.4e-40 Score=317.29 Aligned_cols=166 Identities=22% Similarity=0.409 Sum_probs=150.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..++|||+|||+++++++|+++|++||+|.+|+++.++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34679999999999999999999999999999998874 57999999999999999999999999999999998754
Q ss_pred ccCCC--------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 014955 131 ASGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (415)
Q Consensus 131 ~~~~~--------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (415)
..... .+....++|||+||+.++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 1123457899999999999999999999999999999999988899999999999999999999999
Q ss_pred hCCceeCCeeEEEEEccC
Q 014955 203 LTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 203 l~~~~~~g~~l~v~~a~~ 220 (415)
||+..++|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999999875
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.4e-40 Score=322.21 Aligned_cols=276 Identities=20% Similarity=0.232 Sum_probs=213.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHh--CCccccCCceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~ 132 (415)
++++|||+|||.++++++|+++|++||.|.+|++++++ +||||+|.+.++|.+|+..+ ++..+.|+.|+|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k--~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK--RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC--CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 46899999999999999999999999999999998754 79999999999999999864 778899999999998654
Q ss_pred CCCCC---------CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 014955 133 GQRED---------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (415)
Q Consensus 133 ~~~~~---------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (415)
..... .....+|+|.||+..+++++|+++|+.||.|.++.++++. .+++|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 21111 1122478999999999999999999999999999998653 2468999999999999999999
Q ss_pred CCceeCC--eeEEEEEccCCCCCC---cccc---cc-------cccc----ccccc------------CCCC--------
Q 014955 204 TGKWLGS--RQIRCNWATKGAGNN---EDKQ---SS-------DAKS----VVELT------------NGSS-------- 244 (415)
Q Consensus 204 ~~~~~~g--~~l~v~~a~~~~~~~---~~~~---~~-------~~~~----~~~~~------------~~~~-------- 244 (415)
||..+.+ +.|+|+|++...... ..+. .. .... ..... .+..
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999854 689999987543210 0000 00 0000 00000 0000
Q ss_pred ---cCCcC--------------------CCCCCCCCCCCcceeEEEccCCc-cCCHHHHHHHHhhcCCeeeEEEEEeCC-
Q 014955 245 ---EDGKE--------------------TTNTEAPENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (415)
Q Consensus 245 ---~~~~~--------------------~~~~~~~~~~~~~~~l~v~nlp~-~~~~~~L~~~F~~~G~~~i~~i~~~~~- 299 (415)
..... ......+...++.++|||+|||+ .+++++|+++|+.|| .|.+|++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 00000 00000111234668999999998 699999999999999 9999999876
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 300 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 300 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
+|+|||+|.+.++|..|+..|||. .+.|++|+|.|++..
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~---~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGV---KLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC---EECCceEEEEEcccc
Confidence 699999999999999999999999 999999999998754
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-40 Score=321.16 Aligned_cols=243 Identities=23% Similarity=0.368 Sum_probs=206.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCcccc-CCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~ 130 (415)
..++|||+|||.+++|++|+++|++||.|.+|+++.+. ++|||||+|.+.++|++|++.||+..+. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 45789999999999999999999999999999998863 5799999999999999999999998885 7888777653
Q ss_pred ccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCC-ceEEEEe-ecCCCCCcceEEEEEEcCHHHHHHHHHHhCC--c
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--K 206 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~ 206 (415)
..++|||+|||.++++++|.+.|++++. +.++.+. .....++++|||||+|.+.++|..|++.|+. .
T Consensus 137 ---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 137 ---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 2468999999999999999999999863 4444443 2234567899999999999999999998864 4
Q ss_pred eeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhc
Q 014955 207 WLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 286 (415)
Q Consensus 207 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~ 286 (415)
.++|+.|.|.|+.++..... ......++|||+||+.++++++|+++|+.|
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~------------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDE------------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred EecCceEEEEeecccccccc------------------------------cccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 67899999999876432111 011123689999999999999999999999
Q ss_pred --CCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCC
Q 014955 287 --GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (415)
Q Consensus 287 --G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (415)
| .|++|++.+ +||||+|.+.++|.+|++.||+. .|+|+.|+|+|++.+..
T Consensus 258 ~~G--~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~---~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 258 KPG--KVERVKKIR--DYAFVHFEDREDAVKAMDELNGK---ELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCC--ceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEccCCCc
Confidence 8 899998774 69999999999999999999999 99999999999986543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.8e-40 Score=319.04 Aligned_cols=279 Identities=18% Similarity=0.247 Sum_probs=216.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC--Cceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~ 132 (415)
...+|+|+||++.+|+++|+++|++||.|.+|++++++.+++|||+|.+.++|.+|++.|||..+.| ..|+|.|+...
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 3457999999999999999999999999999999888777899999999999999999999999975 36777776431
Q ss_pred C--------C------------C-----------C---------------------------------------------
Q 014955 133 G--------Q------------R-----------E--------------------------------------------- 136 (415)
Q Consensus 133 ~--------~------------~-----------~--------------------------------------------- 136 (415)
. + + .
T Consensus 175 ~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
T TIGR01649 175 RLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPA 254 (481)
T ss_pred CceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCccc
Confidence 1 0 0 0
Q ss_pred ----------------CCCCcceEEEcCCCc-ccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHH
Q 014955 137 ----------------DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (415)
Q Consensus 137 ----------------~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 199 (415)
...++.+|||+||+. .+++++|+++|+.||.|.++++++++ +|||||+|.+.++|..|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~A 329 (481)
T TIGR01649 255 YEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLA 329 (481)
T ss_pred ccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHH
Confidence 012446899999998 69999999999999999999998763 58999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEccCCCCCCcccccccccc--cccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHH
Q 014955 200 INDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS--VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 277 (415)
Q Consensus 200 ~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~ 277 (415)
+..|+|..+.|+.|+|.++................. ...+....................++..+|||+|||.+++++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 999999999999999999866433221110000000 000100000000000011111234567899999999999999
Q ss_pred HHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCee------eEEeeCCCC
Q 014955 278 DLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ------MKCSWGSKP 341 (415)
Q Consensus 278 ~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~------l~v~~a~~~ 341 (415)
+|+++|+.||...+..|++... +++|||+|.+.++|.+|+..||++ .+.++. |+|+|++.+
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~---~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHH---QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCC---ccCCCCCCccceEEEEeccCC
Confidence 9999999999434888888654 599999999999999999999999 899885 999998753
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-40 Score=332.56 Aligned_cols=247 Identities=31% Similarity=0.544 Sum_probs=216.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
+|||+|||.++||++|+++|++||.|.+|++++++. .|||||+|.+.++|++|++.+|+..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999998753 5899999999999999999999999999999999975433
Q ss_pred CCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 014955 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (415)
Q Consensus 134 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (415)
.. ......+|||+|||.++++++|+++|+.||.|.++++..+ .+|+++|||||+|.+.++|.+|++.++|..+.++.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2233458999999999999999999999999999999988 478899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEE
Q 014955 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293 (415)
Q Consensus 214 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~ 293 (415)
.|.....+.... .......++|||+|||.++++++|+++|+.|| .|.+
T Consensus 160 ~v~~~~~~~~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~ 207 (562)
T TIGR01628 160 YVGRFIKKHERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITS 207 (562)
T ss_pred EEeccccccccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEE
Confidence 997654432211 00112236799999999999999999999999 8999
Q ss_pred EEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccC----CeeeEEeeCCCC
Q 014955 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQMKCSWGSKP 341 (415)
Q Consensus 294 i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~----g~~l~v~~a~~~ 341 (415)
+.+.++ +|||||+|.+.++|.+|++.|+|. .+. |+.|.|.++..+
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~---~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK---KIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc---EecccccceeeEeecccCh
Confidence 988764 689999999999999999999999 899 999999887544
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.8e-40 Score=331.49 Aligned_cols=264 Identities=30% Similarity=0.473 Sum_probs=222.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
...+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++.+||..+.|+.|.|.....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 34579999999999999999999999999999998864 569999999999999999999999999999999977655
Q ss_pred cCCCC--CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 132 SGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 132 ~~~~~--~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
+.... .....++|||+|||.++++++|+++|+.||.|.++.+.++ .++.++|||||+|.+.++|.+|++.++|..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 44332 3344568999999999999999999999999999999988 47899999999999999999999999999999
Q ss_pred ----CeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhh
Q 014955 210 ----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 285 (415)
Q Consensus 210 ----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~ 285 (415)
|+.+.|.++..+........... ... ...........+|||+||+..+++++|+++|+.
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~~~~----~~~-------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~ 308 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELRRKF----EEL-------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE 308 (562)
T ss_pred ccccceeeEeecccChhhhHHHHHhhH----Hhh-------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh
Confidence 99999988766543211000000 000 000011223467999999999999999999999
Q ss_pred cCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 286 LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 286 ~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
|| .|++|++..+ +|||||+|.+.++|.+|+..|||. .++|++|.|.|+..+
T Consensus 309 ~G--~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~---~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 309 CG--EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR---MLGGKPLYVALAQRK 364 (562)
T ss_pred cC--CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC---eeCCceeEEEeccCc
Confidence 99 8999999765 699999999999999999999999 999999999998753
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.8e-38 Score=306.62 Aligned_cols=282 Identities=24% Similarity=0.386 Sum_probs=217.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||..+++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999875 36899999999999999995 899999999999987
Q ss_pred ccccCCC---------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHH
Q 014955 129 AYASGQR---------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (415)
Q Consensus 129 ~~~~~~~---------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 199 (415)
....... .......+|||+|||..+++++|+++|+.||.|..+.+.+++.+|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6432111 1123357999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEccCCCCCCccccc---------ccc----cc---------------cccccCC---------
Q 014955 200 INDLTGKWLGSRQIRCNWATKGAGNNEDKQS---------SDA----KS---------------VVELTNG--------- 242 (415)
Q Consensus 200 ~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~---------~~~----~~---------------~~~~~~~--------- 242 (415)
++.|+|..+.|+.|.|.|+............ ... .. .......
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 9999999999999999997532211100000 000 00 0000000
Q ss_pred CCcCC-----cC---------C--CCCCC--CCCCCcceeEEEccCCccCC----------HHHHHHHHhhcCCeeeEEE
Q 014955 243 SSEDG-----KE---------T--TNTEA--PENNPQYTTVYVGNLAPEVT----------QLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 243 ~~~~~-----~~---------~--~~~~~--~~~~~~~~~l~v~nlp~~~~----------~~~L~~~F~~~G~~~i~~i 294 (415)
..... .. . ..... .....+.++|+|.||....+ .+||++.|++|| .|..|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G--~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG--GVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC--CeeEE
Confidence 00000 00 0 00000 01234568999999955443 368999999999 89999
Q ss_pred EEeC--CcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 295 RVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 295 ~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
.+.. ..|++||+|.+.++|..|++.|||+ .|+|+.|.+.|...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr---~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGR---YFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCc---ccCCeEEEEEEEcH
Confidence 8873 3799999999999999999999999 99999999998653
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.7e-38 Score=310.96 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=210.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcc------------CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST------------GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
....++|||+|||+++|+++|.++|..+ +.|..+.+. +.+|||||+|.+.++|..|| .|+|..|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~--~~kg~afVeF~~~e~A~~Al-~l~g~~~~ 248 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN--KEKNFAFLEFRTVEEATFAM-ALDSIIYS 248 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC--CCCCEEEEEeCCHHHHhhhh-cCCCeEee
Confidence 4467899999999999999999999975 234444443 34589999999999999999 59999999
Q ss_pred CCceeeecccccCCC--------------------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEe
Q 014955 121 GQPIKVNWAYASGQR--------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 121 g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (415)
|+.|+|......... ......++|||+|||..+++++|+++|+.||.|..+.++
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 999999754332100 011234689999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCC
Q 014955 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTE 254 (415)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (415)
+++.+|.++|||||+|.+.++|..|++.|+|..++|+.|.|.++........................ .....
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 401 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKA-------LSQSI 401 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccccc-------chhhh
Confidence 99889999999999999999999999999999999999999998654332211111000000000000 00000
Q ss_pred CCCCCCcceeEEEccCCcc--C--------CHHHHHHHHhhcCCeeeEEEEEeCC---------cceEEEEeCCHHHHHH
Q 014955 255 APENNPQYTTVYVGNLAPE--V--------TQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAAL 315 (415)
Q Consensus 255 ~~~~~~~~~~l~v~nlp~~--~--------~~~~L~~~F~~~G~~~i~~i~~~~~---------~g~afV~f~~~~~A~~ 315 (415)
......+..+|+|.|+... + ..++|+++|++|| .|..|.|.++ +|++||+|.+.++|.+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~ 479 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEK 479 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHH
Confidence 1122345688999999642 1 2368999999999 8999999864 4899999999999999
Q ss_pred HHHHhcCCCccccCCeeeEEeeCC
Q 014955 316 AIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 316 A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
|+..|||. .|+|+.|.|.|..
T Consensus 480 A~~~lnGr---~~~gr~v~~~~~~ 500 (509)
T TIGR01642 480 AMEGMNGR---KFNDRVVVAAFYG 500 (509)
T ss_pred HHHHcCCC---EECCeEEEEEEeC
Confidence 99999999 9999999999964
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=269.57 Aligned_cols=167 Identities=29% Similarity=0.472 Sum_probs=147.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCc-cccC--Cceee
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGR-HLFG--QPIKV 126 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~-~~~g--~~l~v 126 (415)
.+.-.+||+.||..++|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+..|+.. .|.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456699999999999999999999999999999999985 589999999999999999998774 4666 57888
Q ss_pred ecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc
Q 014955 127 NWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206 (415)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 206 (415)
++++....+. ..+++|||+.|++.++|.|++++|++||.|+++.|++| ..+.+||||||.|.+.+.|..||+.|||.
T Consensus 112 k~Ad~E~er~--~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI--VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc--ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccc
Confidence 8876654433 55689999999999999999999999999999999999 46899999999999999999999999996
Q ss_pred e-eC--CeeEEEEEccCCCC
Q 014955 207 W-LG--SRQIRCNWATKGAG 223 (415)
Q Consensus 207 ~-~~--g~~l~v~~a~~~~~ 223 (415)
. +. ..+|.|+|++.++.
T Consensus 189 ~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred eeeccCCCceEEEecccCCC
Confidence 4 54 46899999977654
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=267.78 Aligned_cols=313 Identities=25% Similarity=0.412 Sum_probs=233.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
.||||++||++++.++|.++|+.+|+|..+.++.++ .+||+||.|.-.+|+++|+...++..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999998876 3699999999999999999999999999999999988665
Q ss_pred CCCC---------------------C--CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEE
Q 014955 133 GQRE---------------------D--TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (415)
Q Consensus 133 ~~~~---------------------~--~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~ 189 (415)
.+.. . ..+...|.|.|||+.+...+|..+|+.||.|..|.|++. ..|+.+|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEE
Confidence 4322 0 122568999999999999999999999999999999966 456777999999
Q ss_pred EcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccc------------------ccc-cc----------cc-ccc
Q 014955 190 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ------------------SSD-AK----------SV-VEL 239 (415)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~------------------~~~-~~----------~~-~~~ 239 (415)
|....+|..|++.+|+..|+||+|.|.|+..+........ ..+ .. .. ...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 9999999999999999999999999999977654322110 000 00 00 000
Q ss_pred cCCCC-------------------------cCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEE
Q 014955 240 TNGSS-------------------------EDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 240 ~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i 294 (415)
.++.+ ...................+|||+|||+++++++|+++|++|| .|.++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya 322 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYA 322 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeE
Confidence 00000 0000000001122233448999999999999999999999999 77777
Q ss_pred EEeCC------cceEEEEeCCHHHHHHHHHHh-----cC-CCccccCCeeeEEeeCCCCCC-------------CCC---
Q 014955 295 RVQRD------KGFGFVRYSTHAEAALAIQMG-----NT-TQSSYLFGKQMKCSWGSKPTP-------------PGT--- 346 (415)
Q Consensus 295 ~~~~~------~g~afV~f~~~~~A~~A~~~l-----~g-~~~~~~~g~~l~v~~a~~~~~-------------~~~--- 346 (415)
.+..+ +|+|||.|.+..+|..|+... .| . .+.||.|+|..+-.+.. .+.
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~---ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNL 399 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV---LLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNL 399 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE---EEeccEEeeeeccchHHHHHHHHHhhhhccCCccce
Confidence 66543 799999999999999999876 23 4 68899999987532211 111
Q ss_pred --CCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014955 347 --SSNPLPPPAAAPIPGLSAADLLAYERQIAM 376 (415)
Q Consensus 347 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 376 (415)
.....-.....++.|.++.+..-..+ ++.
T Consensus 400 yLa~EG~I~~gt~aAeglS~~Dm~kRer-~~~ 430 (678)
T KOG0127|consen 400 YLAREGLIRDGTPAAEGLSATDMAKRER-IAE 430 (678)
T ss_pred eeeccCccccCChhhcccchhhHHHHHH-HHH
Confidence 11112233445566778888777666 443
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5e-32 Score=261.62 Aligned_cols=176 Identities=24% Similarity=0.469 Sum_probs=150.0
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||+|||.++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+|++.|||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
........ ...........++|||+|||+++++++|+++|+.|| .|.++++.++
T Consensus 186 ~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D 239 (612)
T TIGR01645 186 NMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARA 239 (612)
T ss_pred cccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEec
Confidence 22110000 000001112346899999999999999999999999 8999999764
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (415)
||||||+|.+.++|.+|++.||+. .++|+.|+|.++..+..+
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~---elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCC---eeCCeEEEEEecCCCccc
Confidence 799999999999999999999999 999999999998865443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9e-32 Score=247.67 Aligned_cols=169 Identities=24% Similarity=0.441 Sum_probs=152.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
.....++|||+|||+++|+++|+++|+.||+|++|++++++ ++|||||+|.+.++|++|++.||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999998875 35899999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
++.+... ....++|||+|||.++++++|+++|++||.|..+++++|+.+++++|||||+|.+.++|++|++.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9865432 2234689999999999999999999999999999999998899999999999999999999999999998
Q ss_pred eCC--eeEEEEEccCCCC
Q 014955 208 LGS--RQIRCNWATKGAG 223 (415)
Q Consensus 208 ~~g--~~l~v~~a~~~~~ 223 (415)
+.+ ++|+|.++.....
T Consensus 260 ~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCceeEEEEECCcccc
Confidence 865 7899999876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-32 Score=249.16 Aligned_cols=237 Identities=29% Similarity=0.520 Sum_probs=209.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCC
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (415)
+|||| +++||.+|+++|+++|+|.+|+++++-. -|||||+|.++++|++|+..+|...+.|++++|-|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~-- 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS-- 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc--
Confidence 58999 9999999999999999999999999872 28999999999999999999999999999999999865543
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.+||.||+++++..+|.++|+.||.|.++++..+. +| ++|| ||+|+++++|.+|++.+||..+.++.|.|.
T Consensus 78 ------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 ------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 39999999999999999999999999999999884 45 9999 999999999999999999999999999998
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
....+......... .......++|.|++.+++++.|+++|+.+| .|..+.+
T Consensus 149 ~~~~~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v 199 (369)
T KOG0123|consen 149 LFERKEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAV 199 (369)
T ss_pred eccchhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccC--cceEEEE
Confidence 77665443222211 111225699999999999999999999999 8999999
Q ss_pred eCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 297 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
.++ ++|+||.|.+.++|..|++.|++. .+.++.+.|.-+.+
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~---~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGK---IFGDKELYVGRAQK 245 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCC---cCCccceeeccccc
Confidence 875 799999999999999999999999 88888888876655
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=5.2e-31 Score=229.15 Aligned_cols=162 Identities=22% Similarity=0.422 Sum_probs=147.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
++|||+.|.+++.|+.|+..|.+||+|++|.+.+|. .+|||||+|+-+|.|..|++.+||..++||.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 569999999999999999999999999999998875 5799999999999999999999999999999999865443
Q ss_pred CCC--------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 014955 133 GQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (415)
Q Consensus 133 ~~~--------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (415)
... ++...-+++||..+.++.+++||+..|+.||+|..+.+-+++..+.+|||+|++|.+...-..|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 221 223445789999999999999999999999999999999999888999999999999999999999999
Q ss_pred CceeCCeeEEEEEc
Q 014955 205 GKWLGSRQIRCNWA 218 (415)
Q Consensus 205 ~~~~~g~~l~v~~a 218 (415)
-..++|+.|+|..+
T Consensus 274 lFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKC 287 (544)
T ss_pred hhhcccceEecccc
Confidence 99999999999765
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=5.4e-31 Score=242.55 Aligned_cols=167 Identities=29% Similarity=0.460 Sum_probs=149.1
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||+++++++|+++|+.||.|.+++|++|+.+++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
|+.+.... ...++|||+|||.++++++|+++|++|| .|+++++
T Consensus 183 ~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i 225 (346)
T TIGR01659 183 YARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNI 225 (346)
T ss_pred cccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEE
Confidence 87642210 0125799999999999999999999999 8999998
Q ss_pred eCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeCCCCCC
Q 014955 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTP 343 (415)
Q Consensus 297 ~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~ 343 (415)
.++ +|||||+|.+.++|.+|++.||+. .+.+ ++|+|.|++....
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNV---IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCcccc
Confidence 876 489999999999999999999999 7765 7899999986543
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.8e-30 Score=237.28 Aligned_cols=257 Identities=31% Similarity=0.481 Sum_probs=216.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCC
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (415)
|||.||+++++..+|.++|+.||.|.+|++..+. .+|| ||+|.+.++|.+|++.+||..+.|+.|.|.....+..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999999999999999999999999999999976 4689 999999999999999999999999999998776654433
Q ss_pred CC-----CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 014955 137 DT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (415)
Q Consensus 137 ~~-----~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (415)
.. ..-..+++.+++.+.++++|.++|..+|.|.++.++.+ ..+++++|+||+|.+.++|..|++.|++..+.+.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 22 22357899999999999999999999999999999988 4677999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeee
Q 014955 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 291 (415)
Q Consensus 212 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i 291 (415)
.+.|..+..+......-.... ...............|||.|++..++++.|++.|+.|| .|
T Consensus 237 ~~~V~~aqkk~e~~~~l~~~~-----------------~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G--eI 297 (369)
T KOG0123|consen 237 ELYVGRAQKKSEREAELKRKF-----------------EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG--EI 297 (369)
T ss_pred ceeecccccchhhHHHHhhhh-----------------HhhhhhccccccccccccccCccccchhHHHHHHhccc--ce
Confidence 999987766322111000000 00000011122335799999999999999999999999 89
Q ss_pred EEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 292 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 292 ~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..+++..+ +||+||.|.+.++|.+|+..+|+. .+.++.|.|.++.
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~---~i~~k~l~vav~q 347 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR---LIGGKPLYVAVAQ 347 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChh---hhcCCchhhhHHh
Confidence 99988764 899999999999999999999999 9999999998876
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=230.07 Aligned_cols=170 Identities=24% Similarity=0.404 Sum_probs=150.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce-e--CCeeEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-L--GSRQIR 214 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~--~g~~l~ 214 (415)
+.+.-++||+-+|+.++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+|+++. + ...+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3556789999999999999999999999999999999999999999999999999999999999998865 4 357889
Q ss_pred EEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEE
Q 014955 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 215 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i 294 (415)
|+|++...+.. ...++|||+-|+..+||+|++++|++|| .|++|
T Consensus 111 vk~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~ 154 (510)
T KOG0144|consen 111 VKYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFG--HIEDC 154 (510)
T ss_pred ecccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhC--ccchh
Confidence 99987654432 1125799999999999999999999999 99999
Q ss_pred EEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCC
Q 014955 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (415)
Q Consensus 295 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (415)
+|+|+ ||||||+|.+.+.|..|++.|||...|+-...+|.|+|+....+
T Consensus 155 ~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 155 YILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99996 89999999999999999999999986666668999999976543
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=6.9e-29 Score=233.97 Aligned_cols=254 Identities=22% Similarity=0.351 Sum_probs=207.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (415)
..+.++|+|||..+..++|..+|..||.|..|.+. ...-.++|+|.++.+|.+|...|....+...++.+.|+....-
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf 461 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVF 461 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhc
Confidence 34668999999999999999999999999998554 2223599999999999999999999988888888877633110
Q ss_pred C----------------------------------CC------------C-CCcceEEEcCCCcccCHHHHHHHhcCCCC
Q 014955 135 R----------------------------------ED------------T-SGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (415)
Q Consensus 135 ~----------------------------------~~------------~-~~~~~l~v~nlp~~~~~~~l~~~f~~~g~ 167 (415)
. .+ . ...++|||.||+.+.+.+++...|...|.
T Consensus 462 ~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 462 TEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred cCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe
Confidence 0 00 0 11233999999999999999999999999
Q ss_pred ceEEEEeecCCC---CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCC
Q 014955 168 CSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSS 244 (415)
Q Consensus 168 v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (415)
|.++.|...+.. -.+.||+||+|.+.++|..|++.|+|..++|+.|.|.++..+......+..
T Consensus 542 VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~-------------- 607 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKK-------------- 607 (725)
T ss_pred EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccc--------------
Confidence 999988755321 135699999999999999999999999999999999998732221111000
Q ss_pred cCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHH
Q 014955 245 EDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQ 318 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~ 318 (415)
......+.|+|.|||+..+..+++.+|..|| .+.+|+|++. +|||||+|-+..+|.+|+.
T Consensus 608 ------------~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 608 ------------SKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred ------------ccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 0111246899999999999999999999999 9999999975 8999999999999999999
Q ss_pred HhcCCCccccCCeeeEEeeCCCC
Q 014955 319 MGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 319 ~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
.|... .+.||+|.+.|+++.
T Consensus 674 al~ST---HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 674 ALGST---HLYGRRLVLEWAKSD 693 (725)
T ss_pred hhccc---ceechhhheehhccc
Confidence 99988 899999999999864
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-28 Score=205.90 Aligned_cols=162 Identities=27% Similarity=0.583 Sum_probs=148.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
+-.|||+.|...++.++|++.|.+||.|.++++++|- ++||+||.|.+.++|+.||..|||..|++|.|+-+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5569999999999999999999999999999999974 579999999999999999999999999999999999987
Q ss_pred cCCC-------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHH
Q 014955 132 SGQR-------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (415)
Q Consensus 132 ~~~~-------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 198 (415)
+... ....++++||++|++.-++|++|++.|+.||.|.+|+++++ +||+||+|.+.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7532 23467889999999999999999999999999999999966 5799999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEccCCCC
Q 014955 199 AINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 199 a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
||..+|+..+.|+.++|.|-+....
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999766443
No 24
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=208.63 Aligned_cols=280 Identities=21% Similarity=0.330 Sum_probs=231.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC--Cceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (415)
+++-.+++|.|+-+.+|-|-|..+|++||.|.+|..+.+...-.|+|+|.+.+.|..|...|+|..|.. ..|+|.|+.
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 556677999999999999999999999999999888777776789999999999999999999988765 356665542
Q ss_pred c----------cCCC--------C-----------------------------------------CCC-CcceEEEcCCC
Q 014955 131 A----------SGQR--------E-----------------------------------------DTS-GHFNIFVGDLS 150 (415)
Q Consensus 131 ~----------~~~~--------~-----------------------------------------~~~-~~~~l~v~nlp 150 (415)
- ++++ . +.. .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 1 1110 0 001 14678889987
Q ss_pred cc-cCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccc
Q 014955 151 PE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 229 (415)
Q Consensus 151 ~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 229 (415)
.. +|.+-|..+|..||.|.+|+|+.++++. |+|+|.+...|..|++.|+|..|.|+.|+|.+++..........
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkkd~-----ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKKDN-----ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCCcc-----eeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 74 9999999999999999999999886543 99999999999999999999999999999999998877666666
Q ss_pred cccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCC
Q 014955 230 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~ 309 (415)
..+..-...+......+...+..+......+++.+|++.|+|.+++||+|+..|..-|+.......+.+++.+|++.+.+
T Consensus 382 q~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~s 461 (492)
T KOG1190|consen 382 QEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLES 461 (492)
T ss_pred CccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCC
Confidence 66655566666666666666677777777889999999999999999999999999995334444455678999999999
Q ss_pred HHHHHHHHHHhcCCCccccCCe-eeEEeeCCC
Q 014955 310 HAEAALAIQMGNTTQSSYLFGK-QMKCSWGSK 340 (415)
Q Consensus 310 ~~~A~~A~~~l~g~~~~~~~g~-~l~v~~a~~ 340 (415)
.++|..|+-.++.+ .+++. .|+|+|++.
T Consensus 462 veeA~~ali~~hnh---~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 462 VEEAIQALIDLHNH---YLGENHHLRVSFSKS 490 (492)
T ss_pred hhHhhhhccccccc---cCCCCceEEEEeecc
Confidence 99999999999998 77764 899999875
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=4e-28 Score=229.52 Aligned_cols=163 Identities=28% Similarity=0.490 Sum_probs=145.8
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
+..+|||+|||.++++++|+++|+.||+|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35699999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
+.... ...++|||+|||..+++++|+++|+.|| .|..+++..+
T Consensus 82 ~~~~~-----------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~ 124 (352)
T TIGR01661 82 PSSDS-----------------------------------IKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSD 124 (352)
T ss_pred ccccc-----------------------------------cccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEec
Confidence 53211 0124799999999999999999999999 8888887653
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeCCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPT 342 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~ 342 (415)
+|+|||+|.+.++|.+|++.|||. .+.| ++|.|.|++.+.
T Consensus 125 ~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~---~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 125 NVTGLSKGVGFIRFDKRDEADRAIKTLNGT---TPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCCCcCcEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCCCC
Confidence 689999999999999999999999 7776 678999987654
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=223.69 Aligned_cols=265 Identities=24% Similarity=0.404 Sum_probs=196.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+|.|+|||+.+..++|..+|+.||.|.+|.|.+.. ..|||||.|....+|.+|++.+|+..|.|++|-|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5679999999999999999999999999999998654 3599999999999999999999999999999999998543
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 014955 133 GQRED--------------------------------------------------------------------------- 137 (415)
Q Consensus 133 ~~~~~--------------------------------------------------------------------------- 137 (415)
.....
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 21000
Q ss_pred ------------CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh--
Q 014955 138 ------------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-- 203 (415)
Q Consensus 138 ------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-- 203 (415)
..-..+|||.|||.++++++|.+.|+.||.|..+.++.++.|+.++|+|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 011268999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CC-ceeCCeeEEEEEccCCCCCCcc------cccccccccccccCCCCcCCcCCCC--------------------C
Q 014955 204 ---TG-KWLGSRQIRCNWATKGAGNNED------KQSSDAKSVVELTNGSSEDGKETTN--------------------T 253 (415)
Q Consensus 204 ---~~-~~~~g~~l~v~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 253 (415)
.| ..+.||.|.|..+..+.....- +...+....-...-+....+..... .
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 33 6789999999998665432211 1111111110011111111100000 0
Q ss_pred CCCCCCCcceeEEEccCCccCCHHHHHHHHhh----cCCeeeEEEEEeC---------CcceEEEEeCCHHHHHHHHHHh
Q 014955 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMG 320 (415)
Q Consensus 254 ~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~----~G~~~i~~i~~~~---------~~g~afV~f~~~~~A~~A~~~l 320 (415)
..+..-...++|.|.|||..++...|+.+... |-...+..|+.++ +.||+|+.|...+.|.+|+..+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 11222233467999999999999999887653 2112233333332 2699999999999999998765
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=3.2e-28 Score=223.57 Aligned_cols=281 Identities=23% Similarity=0.389 Sum_probs=214.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
....||||+--|...++..||.+||+.+|.|..|.++.++ ++|.|||+|.+.++.-.|+ .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 4456889999999999999999999999999999999987 3699999999999999999 6999999999999976
Q ss_pred ccccCCC-----------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHH
Q 014955 129 AYASGQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197 (415)
Q Consensus 129 ~~~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 197 (415)
....... .-..+-..|||+||..++++++|+.+|++||.|..|.+.+|..+|.++||+||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 5332111 01122233999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEccCCCCCCcc---ccccc---cccc-----------ccccCCCC----------------
Q 014955 198 SAINDLTGKWLGSRQIRCNWATKGAGNNED---KQSSD---AKSV-----------VELTNGSS---------------- 244 (415)
Q Consensus 198 ~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~---~~~~~---~~~~-----------~~~~~~~~---------------- 244 (415)
+|++.|||..+.|+.|+|.....+...... ....+ .... ..+..+..
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~ 414 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAK 414 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccc
Confidence 999999999999999999765433222111 00000 0000 00000000
Q ss_pred ------cC-----CcCCCCCCCCCCCCcceeEEEccCCc--cCC--------HHHHHHHHhhcCCeeeEEEEEeCCc-ce
Q 014955 245 ------ED-----GKETTNTEAPENNPQYTTVYVGNLAP--EVT--------QLDLHRHFHSLGAGVIEEVRVQRDK-GF 302 (415)
Q Consensus 245 ------~~-----~~~~~~~~~~~~~~~~~~l~v~nlp~--~~~--------~~~L~~~F~~~G~~~i~~i~~~~~~-g~ 302 (415)
.. ....+....+....++.|+.+.|+=. ..| .+|+.+.+.+|| .|..|.+.++. |+
T Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g--~v~hi~vd~ns~g~ 492 (549)
T KOG0147|consen 415 LASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHG--KVCHIFVDKNSAGC 492 (549)
T ss_pred cchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcC--CeeEEEEccCCCce
Confidence 00 00000001222226677888888722 222 268889999999 89999999875 99
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 303 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 303 afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.||.|.+.+.|..|+..|||. ||.|+.|...|-.
T Consensus 493 VYvrc~s~~~A~~a~~alhgr---WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 493 VYVRCPSAEAAGTAVKALHGR---WFAGRMITAKYLP 526 (549)
T ss_pred EEEecCcHHHHHHHHHHHhhh---hhccceeEEEEee
Confidence 999999999999999999999 9999999999854
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.3e-26 Score=226.71 Aligned_cols=176 Identities=28% Similarity=0.493 Sum_probs=149.3
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||..+++++|+++|+.||.|.+|.+++|+.+++++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999999999999999999999999997 899999999999987
Q ss_pred ccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEe
Q 014955 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (415)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~ 297 (415)
+............ ......+..++|||+|||..+++++|+++|+.|| .|..|.+.
T Consensus 165 ~~~~~~~~~~~~~-----------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~ 219 (457)
T TIGR01622 165 SQAEKNRAAKAAT-----------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLH 219 (457)
T ss_pred cchhhhhhhhccc-----------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEE
Confidence 6543221110000 0000112257899999999999999999999999 89999988
Q ss_pred CC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
++ +|||||+|.+.++|.+|+..|||. .+.|++|+|.|+.+..
T Consensus 220 ~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~---~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 220 RDPETGRSKGFGFIQFHDAEEAKEALEVMNGF---ELAGRPIKVGYAQDST 267 (457)
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhcCCc---EECCEEEEEEEccCCC
Confidence 43 689999999999999999999999 9999999999988543
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.5e-26 Score=223.60 Aligned_cols=218 Identities=19% Similarity=0.285 Sum_probs=166.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCC-cceEEEeec-----CCCceEEEEEecHHHHHHHHHHhCC--ccccCCceee
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKV 126 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v 126 (415)
..++|||+|||.++++++|.+.|++++. +.++.+... +++|||||+|.+.++|..|++.|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4578999999999999999999999874 445444322 3579999999999999999988764 4578999999
Q ss_pred ecccccCCCCC--CCCcceEEEcCCCcccCHHHHHHHhcCC--CCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 014955 127 NWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (415)
Q Consensus 127 ~~~~~~~~~~~--~~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (415)
.|+.+.....+ .....+|||+||+.++++++|+++|+.| |.|.+|.+++ +||||+|.+.++|.+|++.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHH
Confidence 99877543322 2345789999999999999999999999 9999987763 4899999999999999999
Q ss_pred hCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHH
Q 014955 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 282 (415)
Q Consensus 203 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~ 282 (415)
||+..|+|+.|+|.|+.+............. .+.................+...+++++|++++.+++-+.++
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~-------gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKKSYVRYTRGT-------GGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred hCCCEECCEEEEEEEccCCCccccccccccc-------CCCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 9999999999999999775433111000000 000000000111122233445688999999999999999999
Q ss_pred HhhcC
Q 014955 283 FHSLG 287 (415)
Q Consensus 283 F~~~G 287 (415)
|...|
T Consensus 362 f~~~g 366 (578)
T TIGR01648 362 PRMPG 366 (578)
T ss_pred cccCc
Confidence 99988
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.6e-27 Score=186.47 Aligned_cols=170 Identities=32% Similarity=0.602 Sum_probs=153.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
....||||+||+..++++-|+++|-+.|+|.++++.+++ ..||||++|.+.|+|+-|++-||...+.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345789999999999999999999999999999998876 4699999999999999999999999999999999987
Q ss_pred cccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
. ....+......+||+||.+.++|.-|.+.|+.||.+.+ -.++++..+|.++||+||.|.+.+.+.+|++.++|..+
T Consensus 87 s--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 87 S--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred c--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 6 22333444578999999999999999999999999866 47888888999999999999999999999999999999
Q ss_pred CCeeEEEEEccCCCCCC
Q 014955 209 GSRQIRCNWATKGAGNN 225 (415)
Q Consensus 209 ~g~~l~v~~a~~~~~~~ 225 (415)
.++++.|.|+.++..+.
T Consensus 165 ~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCceEEEEEEecCCCc
Confidence 99999999998876655
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=6.7e-27 Score=184.92 Aligned_cols=169 Identities=31% Similarity=0.486 Sum_probs=146.4
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
....+|||+||+..++++-|+++|-..|+|.++++.+|+.+..++||||++|.++++|+.|++-|+...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~ 298 (415)
.....+ ...+.+|||+||.+.+++..|.+.|+.|| +.+..-.+++
T Consensus 87 s~~~~n----------------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG-~l~~~P~i~r 131 (203)
T KOG0131|consen 87 SAHQKN----------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFG-VLISPPKIMR 131 (203)
T ss_pred cccccc----------------------------------ccccccccccccCcchhHHHHHHHHHhcc-ccccCCcccc
Confidence 622111 11125799999999999999999999999 2333234443
Q ss_pred C------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCCC
Q 014955 299 D------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPG 345 (415)
Q Consensus 299 ~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 345 (415)
+ +||+||.|.+.+.+.+|+..|||. .++++++.|+|+.+....+
T Consensus 132 d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq---~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 132 DPDTGNPKGFGFINYASFEASDAAIGSMNGQ---YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccCCCCCCCeEEechhHHHHHHHHHHhccc---hhcCCceEEEEEEecCCCc
Confidence 3 789999999999999999999999 9999999999998766554
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=198.90 Aligned_cols=197 Identities=21% Similarity=0.379 Sum_probs=161.2
Q ss_pred EecHHHHHHHHHHhCCccccCCceeeeccccc-------CCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEE
Q 014955 101 YFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-------GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (415)
Q Consensus 101 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~-------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~ 173 (415)
..+.++|.++|.+-.+ ..|.|.....+ .........+.|||+.||.++.|+||.-+|++.|.|-++++
T Consensus 41 ~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL 115 (506)
T KOG0117|consen 41 VQSEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL 115 (506)
T ss_pred cccHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEE
Confidence 3447778888866544 33344322211 11222345678999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee-CCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCC
Q 014955 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTN 252 (415)
Q Consensus 174 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (415)
+.|+.+|.+||||||.|.+.++|++|++.||+.+| .|+.|.|..+..+
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------- 164 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------- 164 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-------------------------------
Confidence 99999999999999999999999999999999988 6999999987653
Q ss_pred CCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC-------CcceEEEEeCCHHHHHHHHHHh-cCCC
Q 014955 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-------DKGFGFVRYSTHAEAALAIQMG-NTTQ 324 (415)
Q Consensus 253 ~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~-------~~g~afV~f~~~~~A~~A~~~l-~g~~ 324 (415)
++|||+|||.+.++++|++.|++.+. -|.+|.+.. +||||||+|.+...|..|.++| +++.
T Consensus 165 ----------~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~ 233 (506)
T KOG0117|consen 165 ----------CRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKI 233 (506)
T ss_pred ----------ceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCce
Confidence 67999999999999999999999984 466666653 4899999999999999998766 4543
Q ss_pred ccccCCeeeEEeeCCCCCCCCC
Q 014955 325 SSYLFGKQMKCSWGSKPTPPGT 346 (415)
Q Consensus 325 ~~~~~g~~l~v~~a~~~~~~~~ 346 (415)
.++|..+.|+||.+...+..
T Consensus 234 --klwgn~~tVdWAep~~e~de 253 (506)
T KOG0117|consen 234 --KLWGNAITVDWAEPEEEPDE 253 (506)
T ss_pred --eecCCcceeeccCcccCCCh
Confidence 79999999999987665543
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5e-26 Score=189.58 Aligned_cols=167 Identities=28% Similarity=0.465 Sum_probs=148.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
+.....|.|.-||..+|++||+.+|...|+|+++++++|+.+|.+.||+||.|-+++||++|+..|||..+..++|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEe
Q 014955 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (415)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~ 297 (415)
+++....- ....|||.+||...|..||.++|++|| .|..-+|+
T Consensus 118 ARPSs~~I-----------------------------------k~aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL 160 (360)
T KOG0145|consen 118 ARPSSDSI-----------------------------------KDANLYVSGLPKTMTQKELEQIFSPFG--RIITSRIL 160 (360)
T ss_pred ccCChhhh-----------------------------------cccceEEecCCccchHHHHHHHHHHhh--hhhhhhhh
Confidence 98753321 114699999999999999999999999 77777776
Q ss_pred CC------cceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeCCCCCCC
Q 014955 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTPP 344 (415)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~~ 344 (415)
.+ ||.+||.|...++|.+|+..|||. .--| .+|.|.|+++|...
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~---~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCC---CCCCCCCCeEEEecCCcccc
Confidence 55 899999999999999999999998 5555 67999999987543
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=6.9e-24 Score=189.03 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=134.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh-ccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
...|.+||.|||++..+.+|+++|. +.|.|+-|.++.|. .+|||.|+|+++|.+++|++.||...+.|++|.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3457799999999999999999998 57899999998875 4799999999999999999999999999999999754
Q ss_pred cccCC-------------------------------------------CC------------------------------
Q 014955 130 YASGQ-------------------------------------------RE------------------------------ 136 (415)
Q Consensus 130 ~~~~~-------------------------------------------~~------------------------------ 136 (415)
..... ..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 33100 00
Q ss_pred ---------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 137 ---------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 137 ---------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
..+-...+||.||...+....|++.|.-.|.|.++.+-.|+ .+.++|++.++|.++-+|-.||..+++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 01334578999999999999999999999999999988885 57899999999999999999999988655
Q ss_pred eCCeeEEEE
Q 014955 208 LGSRQIRCN 216 (415)
Q Consensus 208 ~~g~~l~v~ 216 (415)
+..++..+.
T Consensus 281 ~~~~~~~~R 289 (608)
T KOG4212|consen 281 LFDRRMTVR 289 (608)
T ss_pred Cccccceee
Confidence 444444443
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=194.66 Aligned_cols=171 Identities=25% Similarity=0.502 Sum_probs=146.7
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++|||+.+...+.|+.|+..|.+||+|+++.+.+|+.|++++||+||+|+-+|.|..|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999743221
Q ss_pred CCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC--
Q 014955 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (415)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-- 299 (415)
.... +.-+...+.....++|||..++++++++||+.+|+.|| +|..|.+-++
T Consensus 194 pQAQ------------------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 PQAQ------------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPT 247 (544)
T ss_pred cccc------------------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCC
Confidence 1100 00001111223457899999999999999999999999 9999999875
Q ss_pred ----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 300 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
|||+||+|.+...-..|+..||-+ -++|.-|+|.-+-.+
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlF---DLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchh---hcccceEecccccCC
Confidence 899999999999999999999999 899999999765443
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=2e-23 Score=184.71 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=197.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC--ccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (415)
..+++.|+++|||.+++|+||..++.+||.|.++.+.+.++ .||++|.|.++|...+..... -.+.|++|.|.|+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 34678899999999999999999999999999999999887 899999999998874433322 23567788777753
Q ss_pred ccCC-----------------------------------CCCCC--CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEE
Q 014955 131 ASGQ-----------------------------------REDTS--GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (415)
Q Consensus 131 ~~~~-----------------------------------~~~~~--~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~ 173 (415)
...- ..... .--.++|.|+-..++.|-|..+|++||.|..|.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 2110 00001 1134678999999999999999999999998865
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee--CCeeEEEEEccCCCCCCc---cccccccccccccc--------
Q 014955 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATKGAGNNE---DKQSSDAKSVVELT-------- 240 (415)
Q Consensus 174 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~a~~~~~~~~---~~~~~~~~~~~~~~-------- 240 (415)
+.. .++ --|+|+|.+.+.|..|...|+|..| +.+.|++.|+........ .+...-..+.....
T Consensus 183 F~K-nn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 183 FTK-NNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred Eec-ccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 522 211 1389999999999999999999887 457888888755322110 00000000000000
Q ss_pred ------------CC---CCcCCcCCCCCCCCCCCC--cceeEEEccCCc-cCCHHHHHHHHhhcCCeeeEEEEEeCCc-c
Q 014955 241 ------------NG---SSEDGKETTNTEAPENNP--QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDK-G 301 (415)
Q Consensus 241 ------------~~---~~~~~~~~~~~~~~~~~~--~~~~l~v~nlp~-~~~~~~L~~~F~~~G~~~i~~i~~~~~~-g 301 (415)
.+ .................. ....|.|.||.. .+|.+.|..+|+-|| +|.+|+|+.++ .
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYG--dVqRVkil~nkkd 336 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYG--DVQRVKILYNKKD 336 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhc--ceEEEEeeecCCc
Confidence 00 000000000000011111 146788888865 689999999999999 99999999875 5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
.|+|+|.|...|..|++.|+|. .+.||+|+|.++|..
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~---~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGH---KLYGKKLRVTLSKHT 373 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcc---eecCceEEEeeccCc
Confidence 8999999999999999999999 999999999998864
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=184.23 Aligned_cols=148 Identities=28% Similarity=0.515 Sum_probs=139.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCCC
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRED 137 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 137 (415)
.|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...|+.|++.|++..|.|..|.|+-++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc-----
Confidence 4999999999999999999999999999999986 8999999999999999999999999999999988776
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
...+.+|+|+|+.+.++.+||+..|++||+|.++.|++| |+||.|...++|..|++.|++..|.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345579999999999999999999999999999999966 899999999999999999999999999999999
Q ss_pred ccCCC
Q 014955 218 ATKGA 222 (415)
Q Consensus 218 a~~~~ 222 (415)
+..+-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 87653
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=4.1e-23 Score=204.87 Aligned_cols=167 Identities=18% Similarity=0.285 Sum_probs=140.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
...++|||+|||..+++++|+++|+.||.|..+.++++. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999998864 4689999999999999999999999999999999987
Q ss_pred cccCCC-------------------------CCCCCcceEEEcCCCccc----------CHHHHHHHhcCCCCceEEEEe
Q 014955 130 YASGQR-------------------------EDTSGHFNIFVGDLSPEV----------TDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 130 ~~~~~~-------------------------~~~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~g~v~~~~~~ 174 (415)
...... ....++.+|+|.|+.... ..++|+++|++||.|.+|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 532210 011346788999996421 135799999999999999998
Q ss_pred ecC---CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 175 WDQ---KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 175 ~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
++. .++..+|++||+|.+.++|.+|+..|||..|.|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 652 2345689999999999999999999999999999999999754
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=176.06 Aligned_cols=149 Identities=25% Similarity=0.438 Sum_probs=136.5
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
.+|||+|||..+++.+|+.+|++||.|.++.|+++ |+||..++...++.||..|+|..+.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999965 8999999999999999999999999999999988765
Q ss_pred CCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcc
Q 014955 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (415)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g 301 (415)
... ..+|+|+||.+.++.++|+..|++|| .|.++.|.+ +
T Consensus 75 sk~-------------------------------------stkl~vgNis~tctn~ElRa~fe~yg--pviecdivk--d 113 (346)
T KOG0109|consen 75 SKA-------------------------------------STKLHVGNISPTCTNQELRAKFEKYG--PVIECDIVK--D 113 (346)
T ss_pred CCC-------------------------------------ccccccCCCCccccCHHHhhhhcccC--Cceeeeeec--c
Confidence 221 15799999999999999999999999 899999986 5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
++||.|...++|..|++.|++. +|.|++++|..+.++.
T Consensus 114 y~fvh~d~~eda~~air~l~~~---~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNT---EFQGKRMHVQLSTSRL 151 (346)
T ss_pred eeEEEEeeccchHHHHhccccc---ccccceeeeeeecccc
Confidence 9999999999999999999999 9999999998866543
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=191.87 Aligned_cols=255 Identities=21% Similarity=0.291 Sum_probs=189.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (415)
+.-+|||+|||+.++++||..+| |||.|..++.|.+|...+++..+.|+.|.|........
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~ 286 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKST 286 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchhhh
Confidence 44569999999999999999999 89999999999999999999999999999865433211
Q ss_pred CC------------------------------------------------------------------------------
Q 014955 135 RE------------------------------------------------------------------------------ 136 (415)
Q Consensus 135 ~~------------------------------------------------------------------------------ 136 (415)
..
T Consensus 287 ~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~ 366 (725)
T KOG0110|consen 287 AKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRR 366 (725)
T ss_pred hhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhh
Confidence 00
Q ss_pred --------------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 014955 137 --------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (415)
Q Consensus 137 --------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (415)
.......++++|||..+..++|...|..||.|..+.+... .+ .++|+|.+..+|.+|+..
T Consensus 367 ~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~-G~-----~aiv~fl~p~eAr~Afrk 440 (725)
T KOG0110|consen 367 FFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG-GT-----GAIVEFLNPLEARKAFRK 440 (725)
T ss_pred hHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc-cc-----eeeeeecCccchHHHHHH
Confidence 0023467999999999999999999999999999955422 12 399999999999999999
Q ss_pred hCCceeCCeeEEEEEccCCCCCCcccccccccccc-----------cccCCCCcCCcC----CCCCCCCCCCCcceeEEE
Q 014955 203 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV-----------ELTNGSSEDGKE----TTNTEAPENNPQYTTVYV 267 (415)
Q Consensus 203 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~v 267 (415)
|....+...++.+.|+....-....+......... ....+....... .............++|||
T Consensus 441 laysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfv 520 (725)
T KOG0110|consen 441 LAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFV 520 (725)
T ss_pred hchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhh
Confidence 99999999999998875533221111000000000 000000000000 000000111122234999
Q ss_pred ccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCc---------ceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 268 GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 268 ~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
.||+++++.++|..+|...| .|.++.|...+ |||||+|.+.++|..|++.|+|. .++|+.|.|+++
T Consensus 521 kNlnf~Tt~e~l~~~F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt---vldGH~l~lk~S 595 (725)
T KOG0110|consen 521 KNLNFDTTLEDLEDLFSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT---VLDGHKLELKIS 595 (725)
T ss_pred hcCCcccchhHHHHHHHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc---eecCceEEEEec
Confidence 99999999999999999999 88888776542 99999999999999999999999 999999999998
Q ss_pred C
Q 014955 339 S 339 (415)
Q Consensus 339 ~ 339 (415)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.8e-22 Score=167.14 Aligned_cols=171 Identities=27% Similarity=0.481 Sum_probs=149.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCcc-ccC--Cceeeec
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRH-LFG--QPIKVNW 128 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~~ 128 (415)
+.|+|||+-|...-+|||++.+|..||.|++|.+.+.. ++|||||.|.+..+|..||..|+|.. +.| ..|-|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56789999999999999999999999999999998854 57999999999999999999999964 444 4677777
Q ss_pred ccccCCCC------------------------------------------------------------------------
Q 014955 129 AYASGQRE------------------------------------------------------------------------ 136 (415)
Q Consensus 129 ~~~~~~~~------------------------------------------------------------------------ 136 (415)
++...++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 75422100
Q ss_pred --------------------------------------------------------------------------------
Q 014955 137 -------------------------------------------------------------------------------- 136 (415)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (415)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -----------------------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCH
Q 014955 137 -----------------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (415)
Q Consensus 137 -----------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (415)
+.++.+.|||..||.+..+.||..+|-.||.|.+.+++.|+.|+.+|.|+||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 005678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEccCCCCCC
Q 014955 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 225 (415)
Q Consensus 194 ~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~ 225 (415)
.++..||..+||..|+-++|+|...++++.++
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999888776543
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=1.1e-19 Score=165.36 Aligned_cols=274 Identities=17% Similarity=0.215 Sum_probs=186.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeec--CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..--|.+++||+++|++||.+||+..+ |+++++.+. +.+|-|||+|.+.+++++|++ .+...+..+.|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 445689999999999999999999885 667777665 457999999999999999996 5778888888888655332
Q ss_pred --------CCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 014955 133 --------GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (415)
Q Consensus 133 --------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (415)
...........|.+.+||.+|+++||.++|+..-.|.. +.++.+ ..+++.|-|||+|++.+.|+.|+..
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r- 164 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR- 164 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-
Confidence 22233345678999999999999999999998866666 434444 4677999999999999999999984
Q ss_pred CCceeCCeeEEEEEccCCCCCCcc-------------cccccccccccccCC----------------------------
Q 014955 204 TGKWLGSRQIRCNWATKGAGNNED-------------KQSSDAKSVVELTNG---------------------------- 242 (415)
Q Consensus 204 ~~~~~~g~~l~v~~a~~~~~~~~~-------------~~~~~~~~~~~~~~~---------------------------- 242 (415)
|...++.|.|.|-.+......... ...........+..+
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 677788888888755321111000 000000000000000
Q ss_pred -----CC--c----------CCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cce
Q 014955 243 -----SS--E----------DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGF 302 (415)
Q Consensus 243 -----~~--~----------~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~ 302 (415)
.. . ...................++.++||+..++.+|..+|+..-. .-..|.+..+ .|-
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRATGE 323 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccCCc
Confidence 00 0 0000000000111122367899999999999999999997741 2233344433 799
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 303 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 303 afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
|+|+|.+.++|..|+.+ ++. .+..+-|.+-.
T Consensus 324 AdveF~t~edav~Amsk-d~a---nm~hrYVElFl 354 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMGK-DGA---NMGHRYVELFL 354 (510)
T ss_pred ceeecccchhhHhhhcc-CCc---ccCcceeeecc
Confidence 99999999999999875 344 57777666643
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.9e-21 Score=162.97 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=158.7
Q ss_pred CCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 014955 121 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (415)
Q Consensus 121 g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 200 (415)
+|.|.|+.++..++.. ++++|||+.|.+.-.|||++.+|..||.|+++.+++.. .|.+|||+||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg~---~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGG---DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCc---cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHH
Confidence 5778888776665543 45799999999999999999999999999999999884 6899999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEEccCCCCCCccc-------------------------------------------------
Q 014955 201 NDLTGKW-L--GSRQIRCNWATKGAGNNEDK------------------------------------------------- 228 (415)
Q Consensus 201 ~~l~~~~-~--~g~~l~v~~a~~~~~~~~~~------------------------------------------------- 228 (415)
..|+|.. + ....|.|+|++..++...+.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999964 4 35678899986654311100
Q ss_pred ---------------------------ccccccc-------------cccc-----------------cCCCCcCC----
Q 014955 229 ---------------------------QSSDAKS-------------VVEL-----------------TNGSSEDG---- 247 (415)
Q Consensus 229 ---------------------------~~~~~~~-------------~~~~-----------------~~~~~~~~---- 247 (415)
....... ...+ .++.....
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 0000000 0000 00000000
Q ss_pred ---------------------------------cCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEE
Q 014955 248 ---------------------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i 294 (415)
....-.......+.+++|||..||.+..+.||...|-.|| .|.+.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeee
Confidence 0000001124557789999999999999999999999999 77777
Q ss_pred EEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 295 RVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 295 ~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
++.-| |.|+||.|.+..+|..|+..|||+ .|+-++|+|...+++.
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF---QIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF---QIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcch---hhhhhhhhhhhcCccc
Confidence 76644 789999999999999999999999 9999999999887654
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=7.9e-21 Score=177.69 Aligned_cols=265 Identities=21% Similarity=0.319 Sum_probs=202.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc-----------C-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSST-----------G-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
..+.++|+++|..++++....+|..- | .+..+.+-.. +++||++|.+.++|..++ .+++..+.|.
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~--~nfa~ie~~s~~~at~~~-~~~~~~f~g~ 250 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE--KNFAFIEFRSISEATEAM-ALDGIIFEGR 250 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc--ccceeEEecCCCchhhhh-cccchhhCCC
Confidence 45779999999999999999998752 3 2555555433 469999999999999998 5789899998
Q ss_pred ceeeecccccCC--------------------CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCc
Q 014955 123 PIKVNWAYASGQ--------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRS 182 (415)
Q Consensus 123 ~l~v~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~ 182 (415)
.+++........ .........+||++||...+++.+.++...||++....++.|..+|.+
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 888864433211 122244568999999999999999999999999999999999888999
Q ss_pred ceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcc
Q 014955 183 RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 262 (415)
Q Consensus 183 ~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (415)
+||||.+|.+......|+..|||..++++.|.|..+............ .... ...............+.
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-~~~~----------~~~~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-ISQS----------QVPGIPLLMTQMAGIPT 399 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-cccc----------ccccchhhhcccCCCcc
Confidence 999999999999999999999999999999999988765543322221 0000 00001111112334444
Q ss_pred eeEEEccCC--ccC-CH-------HHHHHHHhhcCCeeeEEEEEeCC---------cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 263 TTVYVGNLA--PEV-TQ-------LDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 263 ~~l~v~nlp--~~~-~~-------~~L~~~F~~~G~~~i~~i~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
..|.+.|+- .++ .+ |+++.-+.+|| .|..|.++++ .|..||+|++.+++.+|++.|+|.
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 566666652 222 11 46667788999 8999999876 589999999999999999999999
Q ss_pred CccccCCeeeEEeeC
Q 014955 324 QSSYLFGKQMKCSWG 338 (415)
Q Consensus 324 ~~~~~~g~~l~v~~a 338 (415)
.|.||.|..+|-
T Consensus 478 ---KF~nRtVvtsYy 489 (500)
T KOG0120|consen 478 ---KFANRTVVASYY 489 (500)
T ss_pred ---eeCCcEEEEEec
Confidence 999999999884
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=5e-19 Score=155.25 Aligned_cols=278 Identities=18% Similarity=0.190 Sum_probs=203.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHh--CCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~ 130 (415)
++++..|.|++|-..++|.||.+..+.||+|.-|.+++.++ .|+|+|++++.|+.++... +...+.|+.-.++++.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 45667799999999999999999999999998888877664 7999999999999998543 3345667777777774
Q ss_pred ccC----CCCCCCCcceEEEcCC--CcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 014955 131 ASG----QREDTSGHFNIFVGDL--SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (415)
Q Consensus 131 ~~~----~~~~~~~~~~l~v~nl--p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (415)
... ..+...++..|.+.-| -+.+|.+-|..++...|.|.+|.|++. ++ --|.|||++.+.|.+|.+.||
T Consensus 106 sq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred hhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcc
Confidence 322 2233344555554444 456999999999999999999988854 33 259999999999999999999
Q ss_pred Ccee--CCeeEEEEEccCCCCCCccc---ccc------------ccc-------------ccccccCCCCc-C-------
Q 014955 205 GKWL--GSRQIRCNWATKGAGNNEDK---QSS------------DAK-------------SVVELTNGSSE-D------- 246 (415)
Q Consensus 205 ~~~~--~g~~l~v~~a~~~~~~~~~~---~~~------------~~~-------------~~~~~~~~~~~-~------- 246 (415)
|..| +.++|+|+|+++..-...+. .+. ... .......+... .
T Consensus 181 GADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p 260 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGP 260 (494)
T ss_pred cccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCC
Confidence 9766 67899999997743211000 000 000 00000000000 0
Q ss_pred ----------CcCC-CCCCCCCCCCcceeEEEccCCcc-CCHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHH
Q 014955 247 ----------GKET-TNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEA 313 (415)
Q Consensus 247 ----------~~~~-~~~~~~~~~~~~~~l~v~nlp~~-~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A 313 (415)
.... .....+....+...+.|.+|... ++-+.|..+|..|| .|.+|++++. .|-|+|++.|..+.
T Consensus 261 ~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk~gtamVemgd~~av 338 (494)
T KOG1456|consen 261 PHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTKPGTAMVEMGDAYAV 338 (494)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecccceeEEEcCcHHHH
Confidence 0000 00112234456688999999885 68889999999999 9999999987 58999999999999
Q ss_pred HHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 314 ALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 314 ~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
.+|+..||+. .+.|.+|.|.+++...
T Consensus 339 er~v~hLnn~---~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 339 ERAVTHLNNI---PLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHhccC---ccccceEEEeeccccc
Confidence 9999999999 8899999998887643
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.1e-19 Score=150.37 Aligned_cols=192 Identities=18% Similarity=0.266 Sum_probs=146.9
Q ss_pred CcceEEEcCCCcccCHHHHHH----HhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFA----CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
++.+|||.||+..+..++|++ +|+.||.|.+|... ++.+.||-|||.|.+.+.|..|+..|+|..+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999888 99999999999888 46789999999999999999999999999999999999
Q ss_pred EEccCCCCCCccccc----ccc----cccc-----cccCCCCcC--CcCCCCCCCCCCCCcceeEEEccCCccCCHHHHH
Q 014955 216 NWATKGAGNNEDKQS----SDA----KSVV-----ELTNGSSED--GKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280 (415)
Q Consensus 216 ~~a~~~~~~~~~~~~----~~~----~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~ 280 (415)
.|+..+......... .+. .... ....+.... .............++..+||+.|||.+++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999765432221100 000 0000 000000000 0000000013346778999999999999999999
Q ss_pred HHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCCCccccC-CeeeEEeeCC
Q 014955 281 RHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGS 339 (415)
Q Consensus 281 ~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~ 339 (415)
.+|.+|. -..+|++... ++.|||+|.+...|..|...+.+. .+- ...+.|.|++
T Consensus 165 ~lf~qf~--g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~---~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFP--GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF---KITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCc--ccceeEeccCCCceeEEecchhhhhHHHhhhhccc---eeccCceEEecccC
Confidence 9999998 7889998886 689999999999999999999998 665 8889998876
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.7e-18 Score=137.47 Aligned_cols=169 Identities=22% Similarity=0.361 Sum_probs=132.3
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.+++|||+|||.++.+.||.++|.+||.|..|.+... ...-.||||+|++..+|+.||..-+|..++|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999988632 2456799999999999999999899999999999999987
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
........... .. +....+........+..-.....+.|.+||.+-+++||++++.+-| +|+...+.++
T Consensus 82 ggr~s~~~~G~--------y~-gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD 150 (241)
T KOG0105|consen 82 GGRSSSDRRGS--------YS-GGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD 150 (241)
T ss_pred CCCcccccccc--------cC-CCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc
Confidence 65422211110 00 0011111111222233333446899999999999999999999999 8888888887
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 300 KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 300 ~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
|.+.|+|...++...|+..|...
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccc
Confidence 79999999999999999999887
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.82 E-value=8.7e-18 Score=147.50 Aligned_cols=262 Identities=15% Similarity=0.142 Sum_probs=194.8
Q ss_pred CcceEEE--cCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC--Cceeeeccc
Q 014955 55 TCRSVYV--GNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v--~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (415)
++..|.+ -|--+.+|-+-|+.++.+.|.|.+|.|++. +.-.|.|+|++.+.|++|...|||..|.. .+|+|+|++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 3344444 444467999999999999999999998887 44689999999999999999999987763 578888886
Q ss_pred ccCC-----------------------------C----------------------------------------------
Q 014955 131 ASGQ-----------------------------R---------------------------------------------- 135 (415)
Q Consensus 131 ~~~~-----------------------------~---------------------------------------------- 135 (415)
+..- +
T Consensus 198 P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g 277 (494)
T KOG1456|consen 198 PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRG 277 (494)
T ss_pred cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCC
Confidence 5210 0
Q ss_pred ----CCCCCcceEEEcCCCcc-cCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 136 ----EDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 136 ----~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
....+...+.|.+|... ++-+.|..+|-.||.|++|++++.+ .|.|+|++.+..+.++|+..||+..+.|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 00023467889999874 7788999999999999999999764 2469999999999999999999999999
Q ss_pred eeEEEEEccCCCCCCccccccccc---ccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcC
Q 014955 211 RQIRCNWATKGAGNNEDKQSSDAK---SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287 (415)
Q Consensus 211 ~~l~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G 287 (415)
.+|.|.+++-...... ....... +...+......+...+....-....+++++|+.-|.|..+||+.|.++|...+
T Consensus 353 ~kl~v~~SkQ~~v~~~-~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~ 431 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPV-QPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD 431 (494)
T ss_pred ceEEEeeccccccccC-CceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC
Confidence 9999998865433222 1111111 11111111111111122222344567889999999999999999999999886
Q ss_pred CeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCC
Q 014955 288 AGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQ 324 (415)
Q Consensus 288 ~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~ 324 (415)
+...++++... ...+.++|++.++|..|+..+|..+
T Consensus 432 -v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 432 -VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred -CCcceEEeecccccccccceeeeehHHHHHHHHHHhcccc
Confidence 45777777654 3578999999999999999999983
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3e-19 Score=141.77 Aligned_cols=147 Identities=21% Similarity=0.365 Sum_probs=127.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
..++|||+|||.++-+.||.++|-+||.|..|.+..... ..||||+|+++.+|+.|+..-+|..+.|..|+|+++..-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 457799999999999999999999999999998866543 5799999999999999999999999999999999986531
Q ss_pred C-----------------------CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEE
Q 014955 134 Q-----------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190 (415)
Q Consensus 134 ~-----------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f 190 (415)
. .....+.+.|.|.+||++.+++||++...+-|.|-...+.+| |++.|+|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~ 157 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEY 157 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeee
Confidence 1 112245678999999999999999999999999988888866 2699999
Q ss_pred cCHHHHHHHHHHhCCcee
Q 014955 191 RNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 191 ~~~~~a~~a~~~l~~~~~ 208 (415)
...|+.+.|+..|+...+
T Consensus 158 ~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eehhhHHHHHHhhccccc
Confidence 999999999999987665
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=143.72 Aligned_cols=160 Identities=18% Similarity=0.400 Sum_probs=139.0
Q ss_pred CcceEEEcCCCCCCCHHHHHH----HHhccCCcceEEEeec-CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQE----VFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~----~f~~~G~v~~v~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
++.||||.||+..+..++|+. +|+.||.|.+|...+. +.+|.|||.|.+.+.|..|+..|+|..|.|++++|.|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 445899999999999999887 9999999999999865 45899999999999999999999999999999999998
Q ss_pred cccCCC-----------------------------------------------CCCCCcceEEEcCCCcccCHHHHHHHh
Q 014955 130 YASGQR-----------------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACF 162 (415)
Q Consensus 130 ~~~~~~-----------------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f 162 (415)
+.+... ....++..+|+.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 764320 113566789999999999999999999
Q ss_pred cCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEEEcc
Q 014955 163 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (415)
Q Consensus 163 ~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~ 219 (415)
+.|.....++++... ++.|||+|.+...+..|...+.+..+. ...+.+.++.
T Consensus 168 ~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999988543 457999999999999999999998875 7788887764
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=2.1e-19 Score=160.55 Aligned_cols=169 Identities=22% Similarity=0.418 Sum_probs=149.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+.++|+|++|+++++++.|++.|+.||.|.+|.+++++. +||+||+|.+++...+++. ...+.+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 567899999999999999999999999999999999763 5899999999999988885 45677899999998887
Q ss_pred ccCCCCCC---CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 131 ASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 131 ~~~~~~~~---~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
++...... ....++||++||.+++++++++.|++||.|..+.++.|..+.+++||+||.|.+++.+++++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 76543332 246799999999999999999999999999999999999999999999999999999999886 67788
Q ss_pred eCCeeEEEEEccCCCCCC
Q 014955 208 LGSRQIRCNWATKGAGNN 225 (415)
Q Consensus 208 ~~g~~l~v~~a~~~~~~~ 225 (415)
|.++.+.|..+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999998876544
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=7.8e-20 Score=168.67 Aligned_cols=182 Identities=25% Similarity=0.366 Sum_probs=149.2
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.+++|+.-|....++.+|.++|+.+|.|.+|+++.|+.+++++|.+||+|.+.+....|+. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3456789999999999999999999999999999999999999999999999999999999995 999999999999987
Q ss_pred ccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEe
Q 014955 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (415)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~ 297 (415)
+...... ..... ..-.......+...|||+||++++++++|+.+|++|| .|..|.+.
T Consensus 255 sEaeknr--~a~~s-------------------~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~ 311 (549)
T KOG0147|consen 255 SEAEKNR--AANAS-------------------PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLT 311 (549)
T ss_pred cHHHHHH--HHhcc-------------------ccccccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeec
Confidence 6442211 00000 0000011122334499999999999999999999999 88888777
Q ss_pred CC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCCCC
Q 014955 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGT 346 (415)
Q Consensus 298 ~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~ 346 (415)
++ +||+||+|.+.++|..|++.|||. ++.|+.|+|...........
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf---elAGr~ikV~~v~~r~~~~~ 363 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGF---ELAGRLIKVSVVTERVDTKE 363 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccc---eecCceEEEEEeeeeccccc
Confidence 65 799999999999999999999998 99999999998776655443
No 53
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=1.4e-18 Score=155.38 Aligned_cols=168 Identities=27% Similarity=0.456 Sum_probs=142.3
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
...+|||++|++.++++.|++.|..||.|.++.+++|+.+++++||+||+|.+.+...+++. .....++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 55799999999999999999999999999999999999999999999999999999999886 45677999999998887
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
++......... .....|||++||.++++++++++|.+|| .|.++.+.-+
T Consensus 84 ~r~~~~~~~~~-----------------------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVGRH-----------------------------LRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD 132 (311)
T ss_pred Ccccccccccc-----------------------------cceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec
Confidence 75543322211 1346899999999999999999999999 7888877654
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (415)
+||+||+|.+++...+++. ..-+ .|+++.+.|.-|-++..
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~---~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTL-QKFH---DFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccccccccceeeEeccccccceecc-ccee---eecCceeeEeeccchhh
Confidence 7999999999999998876 3455 79999999988765543
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=2.9e-17 Score=134.56 Aligned_cols=153 Identities=22% Similarity=0.374 Sum_probs=122.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-C----CceEEEEEecHHHHHHHHHHhCCcccc---CCc
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-K----SSYGFIHYFDRRSAAMAILSLNGRHLF---GQP 123 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~----~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~ 123 (415)
.+...|||||.+||.++...||+.+|+.|-..+...+.... . +.+|||.|.+..+|..|+..|||..|. +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34557999999999999999999999998777766554432 2 269999999999999999999999986 678
Q ss_pred eeeecccccCCCCCC-----------------------------------------------------------------
Q 014955 124 IKVNWAYASGQREDT----------------------------------------------------------------- 138 (415)
Q Consensus 124 l~v~~~~~~~~~~~~----------------------------------------------------------------- 138 (415)
|+|++++...+....
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 888887553221000
Q ss_pred ------------------CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 014955 139 ------------------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (415)
Q Consensus 139 ------------------~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 200 (415)
..+.+|||.||..+++|++|+.+|+.|.....++|. . ......||++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~---~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-A---RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-c---CCCcceEeecHHHHHHHHHHH
Confidence 234689999999999999999999999877666664 2 123447999999999999999
Q ss_pred HHhCCcee
Q 014955 201 NDLTGKWL 208 (415)
Q Consensus 201 ~~l~~~~~ 208 (415)
..|+|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99998766
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=3.9e-17 Score=133.79 Aligned_cols=184 Identities=17% Similarity=0.267 Sum_probs=127.2
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCC-CCCcceEEEEEEcCHHHHHHHHHHhCCceeC---CeeEEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIRC 215 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v 215 (415)
.-++|||.+||.++...||+.+|..|-..+...+....+ ....+-++|+.|.+..+|..|++.|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 357999999999999999999999997777766653322 2235679999999999999999999999984 889999
Q ss_pred EEccCCCCCCcccccccccccccccCC----------------C--CcCC---------------------------cCC
Q 014955 216 NWATKGAGNNEDKQSSDAKSVVELTNG----------------S--SEDG---------------------------KET 250 (415)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~---------------------------~~~ 250 (415)
++++........+....+.....+... . .... .+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998665433332222211111000000 0 0000 000
Q ss_pred CC------CCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCC
Q 014955 251 TN------TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 251 ~~------~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
.. .........+.||||.||..+++|++|+.+|+.|.+..+..|+-...-..||++|++.+.|..||..|.|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 00 00011223347899999999999999999999997444544444444557999999999999999999998
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=6.6e-17 Score=130.53 Aligned_cols=85 Identities=40% Similarity=0.617 Sum_probs=79.7
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...++|||+|||..+++++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|+.|++.|++..+.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 57
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.71 E-value=5.6e-17 Score=142.93 Aligned_cols=271 Identities=16% Similarity=0.136 Sum_probs=183.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc----CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
....|..++||+..++.+|..+|... |-+.-|.....++.|++.|+|.|.|.-+.|++. +.+.+.++.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 34557889999999999999999853 222223333345668999999999999999864 6677778888886554
Q ss_pred ccC-------------CCCCCCCcceEEEcCCCcccCHHHHHHHhcCC----CCceEEEEeecCCCCCcceEEEEEEcCH
Q 014955 131 ASG-------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (415)
Q Consensus 131 ~~~-------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (415)
..+ ........-.|.+.+||.++++.++.++|..- |..+.|.+++. -+|+..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 321 11122345678899999999999999999743 34456655544 4689999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCcc
Q 014955 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE 273 (415)
Q Consensus 194 ~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 273 (415)
++|..|+.+ |...++.|.|.+-.+....-...-.... ...+..+.....................+|.+++||+.
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~----s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREV----SEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhc----cccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 999999974 5566777777765543311100000000 00111111111111111222223334679999999999
Q ss_pred CCHHHHHHHHhhcCCeeeEE--EEEe-----CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 274 VTQLDLHRHFHSLGAGVIEE--VRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 274 ~~~~~L~~~F~~~G~~~i~~--i~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
.+.|||.++|..|- ..|.. |.+. +..|-|||+|.+.++|..|..+.+++ ...+|-|.|-
T Consensus 292 AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~---~mk~RYiEvf 357 (508)
T KOG1365|consen 292 ATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK---LMKSRYIEVF 357 (508)
T ss_pred hhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh---hcccceEEEe
Confidence 99999999999884 23333 3332 34799999999999999999999888 6668888774
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=3.3e-15 Score=134.01 Aligned_cols=194 Identities=18% Similarity=0.260 Sum_probs=139.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhc-CCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
..+.+||.|+|+++.|.+|+++|. +.|.|..|.++.| .++++||||.|+|+++|.+++|++.|+...+.||+|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999995 5799999999999 68999999999999999999999999999999999999754
Q ss_pred cCCCCCCccc--------------------cccc---------ccccccccCCCCcC-CcCCC-----------------
Q 014955 219 TKGAGNNEDK--------------------QSSD---------AKSVVELTNGSSED-GKETT----------------- 251 (415)
Q Consensus 219 ~~~~~~~~~~--------------------~~~~---------~~~~~~~~~~~~~~-~~~~~----------------- 251 (415)
.......... .... ........+..+.. .....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 3311100000 0000 00000000000000 00000
Q ss_pred ---CCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC-----CcceEEEEeCCHHHHHHHHHHhcCC
Q 014955 252 ---NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 252 ---~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
.....-..|....+||.||.+.+..+.|++.|.-.| .++.|.+.- ++|++.++|.++-+|..|+..+++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 000011234456799999999999999999999998 677776543 3799999999999999999999987
Q ss_pred CccccCCeeeEEeeCC
Q 014955 324 QSSYLFGKQMKCSWGS 339 (415)
Q Consensus 324 ~~~~~~g~~l~v~~a~ 339 (415)
-+.+++..+...+
T Consensus 280 ---g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 280 ---GLFDRRMTVRLDR 292 (608)
T ss_pred ---CCccccceeeccc
Confidence 7888888877644
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.8e-16 Score=132.93 Aligned_cols=165 Identities=25% Similarity=0.392 Sum_probs=131.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
..+||++||+.+.+.+|..+|..||.+.++.+.. ||+||+|.+..+|..|+..++++.+.|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999998762 48899999999999999999999999888999988753
Q ss_pred CCCCcccccccccccccccCCCCcCCcCC-CCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCc
Q 014955 222 AGNNEDKQSSDAKSVVELTNGSSEDGKET-TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK 300 (415)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~ 300 (415)
.... +.+..+... ............+.|+|.++...+.+.+|++.|.++| .+..... .+
T Consensus 74 ~~~~----------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~--~~ 133 (216)
T KOG0106|consen 74 RRGR----------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA--RR 133 (216)
T ss_pred cccc----------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh--hc
Confidence 2221 000000000 0111222233447899999999999999999999999 5544444 57
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 301 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
+++||+|++.++|.+|+..|++. .+.+++|.+..
T Consensus 134 ~~~~v~Fs~~~da~ra~~~l~~~---~~~~~~l~~~~ 167 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEKLDGK---KLNGRRISVEK 167 (216)
T ss_pred cccceeehhhhhhhhcchhccch---hhcCceeeecc
Confidence 89999999999999999999999 99999999943
No 60
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=2.8e-15 Score=137.06 Aligned_cols=164 Identities=18% Similarity=0.253 Sum_probs=125.1
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.....|.+.+||+++|++||.++|+.+ .|+++.+.+ .+|+..|-|||+|.+++++++|++ .+...+..|.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 344678899999999999999999987 566765554 479999999999999999999998 6888899999999877
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEE--EE
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV--RV 296 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i--~~ 296 (415)
.........+.... ........|.+++||+.||++||.++|+..- |... .+
T Consensus 84 ~~~e~d~~~~~~g~------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~---Iv~~gi~l 136 (510)
T KOG4211|consen 84 GGAEADWVMRPGGP------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLE---IVPDGILL 136 (510)
T ss_pred CCccccccccCCCC------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCc---ccccceee
Confidence 55443222111100 0001225799999999999999999999773 4443 22
Q ss_pred e-----CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 297 Q-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 297 ~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
. +..|.|||+|++.+.|..|+..-. . .++.|-|.|--
T Consensus 137 ~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr-e---~iGhRYIEvF~ 178 (510)
T KOG4211|consen 137 PMDQRGRPTGEAFVQFESQESAEIALGRHR-E---NIGHRYIEVFR 178 (510)
T ss_pred eccCCCCcccceEEEecCHHHHHHHHHHHH-H---hhccceEEeeh
Confidence 2 236899999999999999998744 3 58888888743
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2.7e-15 Score=121.17 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=71.2
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
..++|||+|||+++++++|+++|++|| .|.++++..+ +|||||+|.+.++|..|++.||+. .++|+.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~---~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK---ELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEE
Confidence 346899999999999999999999999 8999988754 799999999999999999999999 99999999
Q ss_pred EeeCCCCCC
Q 014955 335 CSWGSKPTP 343 (415)
Q Consensus 335 v~~a~~~~~ 343 (415)
|+|++.+..
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999876543
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.64 E-value=6e-15 Score=128.88 Aligned_cols=193 Identities=18% Similarity=0.243 Sum_probs=137.0
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
.-+..|||+|||.++|.+++.++|++||.|.+ |++-++ +.|..+|=|++.|-..++...|++.|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567999999999999999999999997743 677777 469999999999999999999999999999999
Q ss_pred eeEEEEEccCCCCCC--cccccc-cccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccC--Cc--cCC-------H
Q 014955 211 RQIRCNWATKGAGNN--EDKQSS-DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNL--AP--EVT-------Q 276 (415)
Q Consensus 211 ~~l~v~~a~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--p~--~~~-------~ 276 (415)
+.|+|+.+.-..... ..+... ...............-.-.+....+......++|.+.|+ |. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999875432211 111000 000000000000000000001112223334478999887 21 122 3
Q ss_pred HHHHHHHhhcCCeeeEEEEEe--CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 277 LDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 277 ~~L~~~F~~~G~~~i~~i~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
++|++-+.+|| .|..|.+. .+.|.+-|.|.+.++|..|++.|+|+ +|+||.|.-+.
T Consensus 291 edl~eec~K~G--~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR---~fdgRql~A~i 348 (382)
T KOG1548|consen 291 EDLTEECEKFG--QVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR---WFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHhC--CcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe---eecceEEEEEE
Confidence 67788899999 88888887 45799999999999999999999999 99999998764
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.2e-16 Score=129.33 Aligned_cols=149 Identities=28% Similarity=0.458 Sum_probs=127.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc-----
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS----- 132 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~----- 132 (415)
.|||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|.+..+|..|+..+|+..|.|..+.+.|+...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 599999999999999999999999999887743 68999999999999999999999999988888888742
Q ss_pred -CCC-----------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 014955 133 -GQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (415)
Q Consensus 133 -~~~-----------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 200 (415)
... ......+.+.|.+++..+.+.+|.+.|..+|.+..... ..+++||+|...+++.+|+
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcc
Confidence 110 11244578899999999999999999999999944433 3447999999999999999
Q ss_pred HHhCCceeCCeeEEEEEc
Q 014955 201 NDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 201 ~~l~~~~~~g~~l~v~~a 218 (415)
..|++..+.++.|.+...
T Consensus 151 ~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhccchhhcCceeeeccc
Confidence 999999999999999443
No 64
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=2.4e-14 Score=125.20 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=132.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcce--------EEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
+..+..|||.|||.++|.+++.++|+++|.|.+ |++.++.. +|-|++.|-..+++..|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 456677999999999999999999999997764 56666543 5899999999999999999999999999
Q ss_pred CceeeecccccCC-----------------------------------CCCCCCcceEEEcCCCc----ccC-------H
Q 014955 122 QPIKVNWAYASGQ-----------------------------------REDTSGHFNIFVGDLSP----EVT-------D 155 (415)
Q Consensus 122 ~~l~v~~~~~~~~-----------------------------------~~~~~~~~~l~v~nlp~----~~~-------~ 155 (415)
+.|+|..+.-... .......++|.+.|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999987632100 11123456788888721 112 3
Q ss_pred HHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 156 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 156 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++|.+-+++||.|.+|.|. + ..+.|.+-|.|.+.++|..||+.|+|+.|+||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 5777889999999999776 3 367789999999999999999999999999999998876553
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.3e-15 Score=124.50 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=79.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+..+|.|.||+.+++|++|.++|.+||.|.++.+.+|++||.+||||||.|.+.++|.+||+.|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014955 219 TKG 221 (415)
Q Consensus 219 ~~~ 221 (415)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.8e-14 Score=102.22 Aligned_cols=70 Identities=37% Similarity=0.769 Sum_probs=67.0
Q ss_pred EEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 144 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|++|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6789999999999999999999999999999999886
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=5.4e-15 Score=128.20 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
....++|+|+|||+..-|.||+.+|.+||.|.+|.|+.+. ++||+||.|++++||++|..+|||.++.||+|.|+.+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3345779999999999999999999999999999999864 58999999999999999999999999999999999886
Q ss_pred cc
Q 014955 131 AS 132 (415)
Q Consensus 131 ~~ 132 (415)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 68
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=1.8e-14 Score=102.17 Aligned_cols=67 Identities=34% Similarity=0.652 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeec---CCCceEEEEEecHHHHHHHHHHhCCccccCCcee
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (415)
|||+|||.++++++|+++|+.||.|..+++..+ ..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999885 2358999999999999999999999999999875
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=4.9e-14 Score=121.57 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
.++|||+|||+.+++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|..|+. |||..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5789999999999999999999999999999999887 46999999999999999995 99999999999999876543
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.1e-14 Score=105.89 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=76.3
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.+++|||+||+..++|+.|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++.++|..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 34799999999999999999999999999999999998888999999999999999999999999999999999999864
Q ss_pred C
Q 014955 220 K 220 (415)
Q Consensus 220 ~ 220 (415)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.2e-15 Score=119.68 Aligned_cols=100 Identities=25% Similarity=0.478 Sum_probs=86.4
Q ss_pred CceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHH
Q 014955 122 QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (415)
Q Consensus 122 ~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 201 (415)
+.+...++...+...+-.++.-|||+|||..+||.||..+|+.||.|.+|.+++|++||+++||||+.|++..+...|+.
T Consensus 16 ~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 16 RELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred HhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEe
Confidence 44445444444444455666789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeeEEEEEccCC
Q 014955 202 DLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 202 ~l~~~~~~g~~l~v~~a~~~ 221 (415)
.|||+.+.||.|+|......
T Consensus 96 N~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred ccCCceecceeEEeeecccc
Confidence 99999999999999865443
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=99.48 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=74.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 50 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..++...+-|||+|||.++|.++..++|.+||.|..|++-..+ .+|.|||.|++..+|.+|++.|+|..+.++.+.|.+
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3345677889999999999999999999999999999998876 469999999999999999999999999999999987
Q ss_pred cccc
Q 014955 129 AYAS 132 (415)
Q Consensus 129 ~~~~ 132 (415)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6543
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6e-14 Score=111.11 Aligned_cols=79 Identities=28% Similarity=0.516 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (415)
..+.|||+||+..+++.||...|..||++.+|.|-. ...|||||+|+++.||+.|+..|+|..|.|..|+|+++.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 356799999999999999999999999999999977 4458999999999999999999999999999999998876544
No 74
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.5e-14 Score=119.38 Aligned_cols=94 Identities=21% Similarity=0.403 Sum_probs=83.9
Q ss_pred cccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
|..........++-+||||+-|+.+++|.+|+..|+.||+|+.|.+++|+.||+++|||||+|+++.+...|.+..+|+.
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 33333344445777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEccCC
Q 014955 208 LGSRQIRCNWATKG 221 (415)
Q Consensus 208 ~~g~~l~v~~a~~~ 221 (415)
|+|+.|.|.+....
T Consensus 168 Idgrri~VDvERgR 181 (335)
T KOG0113|consen 168 IDGRRILVDVERGR 181 (335)
T ss_pred ecCcEEEEEecccc
Confidence 99999999886543
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5e-14 Score=105.39 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
..++||||+||...++|+.|+++|++.|+|..|.|-.++. .|||||+|.+.++|+.|++.+++..+..+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3578999999999999999999999999999999988764 389999999999999999999999999999999886
Q ss_pred c
Q 014955 130 Y 130 (415)
Q Consensus 130 ~ 130 (415)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=4e-13 Score=115.97 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=69.9
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
++|||+|||+.+++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|..|+. |+|. .+.|+.|+|.++.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G--~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~---~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSG--DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGA---TIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCC---eeCCceEEEEecc
Confidence 6899999999999999999999999 9999999876 6999999999999999995 9999 9999999999987
Q ss_pred CCCCC
Q 014955 340 KPTPP 344 (415)
Q Consensus 340 ~~~~~ 344 (415)
+...+
T Consensus 79 ~~~~p 83 (260)
T PLN03120 79 DYQLP 83 (260)
T ss_pred CCCCC
Confidence 65443
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2e-13 Score=118.63 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
....++|+|.|||+...|.||+..|.+|| .|.+|.|..+ |||+||+|++.++|++|.++|||. .+.||+|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG--~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt---~VEGRkIE 167 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFG--KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGT---VVEGRKIE 167 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhC--ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcc---eeeceEEE
Confidence 34457899999999999999999999999 8999988754 899999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014955 335 CSWGSKP 341 (415)
Q Consensus 335 v~~a~~~ 341 (415)
|..+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9987644
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.7e-13 Score=97.11 Aligned_cols=70 Identities=33% Similarity=0.671 Sum_probs=64.6
Q ss_pred EEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 144 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999866 89999999999999999999999999999999875
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=5.2e-14 Score=114.26 Aligned_cols=85 Identities=31% Similarity=0.512 Sum_probs=79.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+......|.|.||...++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|..++|+.|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 014955 217 WATKG 221 (415)
Q Consensus 217 ~a~~~ 221 (415)
++.-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 87543
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=4.7e-14 Score=128.61 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=71.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecH--HHHHHHHHHhCCccccCCceeeecccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDR--RSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..+||||||+++++++||..+|..||.|.+|.|++...+|||||+|.+. .++.+|+..|||..+.|+.|+|+.+.+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 4679999999999999999999999999999999887899999999988 789999999999999999999998765
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.1e-12 Score=122.22 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=109.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
....++|+|-|||..+++++|+.+|+.||.|++|+..+.+ +|.+||+|.|..+|+.|+++|++..+.|+.++.......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 4456899999999999999999999999999997665544 489999999999999999999999999999883222111
Q ss_pred CC-------------------CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCH
Q 014955 133 GQ-------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (415)
Q Consensus 133 ~~-------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (415)
.. ....-....++ +.|++..+..-+...+..+|.+.. +- ++.-..--|++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFADN 223 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhccc
Confidence 10 00111122333 338887776555556666676654 22 222222467888888
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 194 QDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 194 ~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
.++..+.... |..+.+.....+++.+.
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCCC
Confidence 7775555433 66666666666666553
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=97.59 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=67.9
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
.+.|||.|||+++|.|+..++|.+|| .|..|++... +|.|||.|++..+|.+|+..|+|. .+.++.|.|-|=
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg--~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~---n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYG--TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY---NVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhccc--ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc---ccCCceEEEEec
Confidence 47899999999999999999999999 9999999876 799999999999999999999999 999999999873
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=1.9e-13 Score=96.82 Aligned_cols=67 Identities=31% Similarity=0.600 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCcee
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (415)
|||+|||+++++++|+++|+.||.|..+++..++. +++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998763 68999999999999999999999999999874
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=120.02 Aligned_cols=145 Identities=28% Similarity=0.414 Sum_probs=111.5
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.++|||+|||..+++++|.++|..||.|..+.+..++.++.++|||||+|.+.+++..|++.+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
Q ss_pred -CCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 221 -GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
.......... ......................+++.+++..++..++...|..+| .+....+...
T Consensus 195 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN------------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG--DIVRASLPPS 260 (306)
T ss_pred ccccccccccc------------cchhhhccccccccccccccceeeccccccccchhHHHHhccccc--cceeeeccCC
Confidence 1111000000 000000000111222334456899999999999999999999999 6666666544
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=114.18 Aligned_cols=80 Identities=36% Similarity=0.588 Sum_probs=73.0
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.-.+|||++|++.+..++|++.|++||+|++..|+.|+.++++|||+||+|.+.++|.+|++. -.-.|+||+..|+++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 346899999999999999999999999999999999999999999999999999999999985 3446899999998876
Q ss_pred C
Q 014955 220 K 220 (415)
Q Consensus 220 ~ 220 (415)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 86
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.9e-13 Score=107.25 Aligned_cols=79 Identities=30% Similarity=0.496 Sum_probs=71.8
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||+||+..+++.||...|..||++.+|.|-+. +-|||||+|++..+|+.|+..|+|..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3579999999999999999999999999999988754 45799999999999999999999999999999999987
Q ss_pred CCCC
Q 014955 220 KGAG 223 (415)
Q Consensus 220 ~~~~ 223 (415)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6443
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.4e-12 Score=121.16 Aligned_cols=166 Identities=19% Similarity=0.332 Sum_probs=129.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
....++|++||..++++.+.++...||++....++.+. ++||||.+|.++.....|+..|||..++++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 44669999999999999999999999999999988875 46899999999999999999999999999999998775
Q ss_pred ccCCCCC---------------------CCCcceEEEcCCC--ccc-C-------HHHHHHHhcCCCCceEEEEeecCC-
Q 014955 131 ASGQRED---------------------TSGHFNIFVGDLS--PEV-T-------DATLFACFSVYPSCSDARVMWDQK- 178 (415)
Q Consensus 131 ~~~~~~~---------------------~~~~~~l~v~nlp--~~~-~-------~~~l~~~f~~~g~v~~~~~~~~~~- 178 (415)
....... ..++..|.+.|+= .+. + -++++..|.+||.|.+|.+.++..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 4322110 1122223333321 111 1 135666788999999999987722
Q ss_pred --CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 179 --TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 179 --~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
..-..|..||+|.+.+++++|+++|+|.++.||.+...|-..
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 223567799999999999999999999999999999988643
No 88
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.1e-12 Score=109.63 Aligned_cols=76 Identities=32% Similarity=0.450 Sum_probs=71.1
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
..++|.|.||+.++++++|.++|.+|| .|.+|.+.++ ||||||.|.++++|.+|++.|||+ -+++-.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg--~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~---gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG--PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY---GYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC--ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc---ccceEEEE
Confidence 457899999999999999999999999 8999998876 799999999999999999999999 89999999
Q ss_pred EeeCCCC
Q 014955 335 CSWGSKP 341 (415)
Q Consensus 335 v~~a~~~ 341 (415)
|.|+++.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999864
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=3.5e-13 Score=126.22 Aligned_cols=82 Identities=30% Similarity=0.620 Sum_probs=78.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
+.+||+|+|.++++++|.++|+..|.|.+++++.|+.+|+++||+|++|.+.++|..|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 014955 222 AG 223 (415)
Q Consensus 222 ~~ 223 (415)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=3.2e-12 Score=117.11 Aligned_cols=121 Identities=28% Similarity=0.437 Sum_probs=103.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc-
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY- 130 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~- 130 (415)
.++|||+|||.++++++|+++|..||.|..+.+..++ .+|||||+|.+.++|..|+..+++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5889999999999999999999999999999998874 46999999999999999999999999999999999953
Q ss_pred ---ccCCCC-----------------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeec
Q 014955 131 ---ASGQRE-----------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD 176 (415)
Q Consensus 131 ---~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~ 176 (415)
...... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 211111 1234567899999999999999999999999977766544
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.6e-12 Score=109.02 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=69.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
...+|+|+||++.+|+++|+++|+.||.|.+|++++++. .++|||+|.++++|+.|+ .|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 457899999999999999999999999999999999864 479999999999999999 6999999999999986544
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=2.3e-12 Score=104.83 Aligned_cols=79 Identities=28% Similarity=0.470 Sum_probs=73.1
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
....+|.|-||.+-++.++|+.+|++|| .|-+|.|+++ +|||||.|.+..+|..|+++|+|. .++|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~---~ldgRel 85 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA---VLDGREL 85 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcce---eecccee
Confidence 3447899999999999999999999999 9999999987 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCC
Q 014955 334 KCSWGSKPTP 343 (415)
Q Consensus 334 ~v~~a~~~~~ 343 (415)
+|.+|+-..+
T Consensus 86 rVq~arygr~ 95 (256)
T KOG4207|consen 86 RVQMARYGRP 95 (256)
T ss_pred eehhhhcCCC
Confidence 9998886544
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.3e-13 Score=108.97 Aligned_cols=85 Identities=33% Similarity=0.518 Sum_probs=80.4
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||++|...++|.-|...|-+||.|.+|.++.|..++++|||+||+|.-.|+|..||..+|+.++.||.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014955 220 KGAGN 224 (415)
Q Consensus 220 ~~~~~ 224 (415)
+....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86554
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=3.1e-12 Score=116.91 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCH--HHHHHHHHHhCCceeCCeeEEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
....+||||||++.+++++|..+|..||.|.++.|++ .+| ||||||+|.+. .++.+||..|||..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3456899999999999999999999999999999994 456 99999999987 78999999999999999999999
Q ss_pred EccC
Q 014955 217 WATK 220 (415)
Q Consensus 217 ~a~~ 220 (415)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8855
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=9.8e-12 Score=88.18 Aligned_cols=71 Identities=39% Similarity=0.741 Sum_probs=66.5
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
+|+|+|||..+++++|+++|+.||.+..+.+..++ +.++|+|||+|.+.++|..|++.+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 678899999999999999999999999999999886
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=104.97 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=67.6
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
.+.+|||+||++.+|+++|+++|+.|| .|.+|++.++ +++|||+|.+.++|..|+ .|+|. .|.+++|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G--~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa---~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCG--AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGA---TIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcC--CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCC---eeCCceEEEEe
Confidence 347999999999999999999999999 9999999987 479999999999999998 59999 99999999976
Q ss_pred CCC
Q 014955 338 GSK 340 (415)
Q Consensus 338 a~~ 340 (415)
...
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 553
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=1e-11 Score=83.46 Aligned_cols=55 Identities=27% Similarity=0.559 Sum_probs=51.8
Q ss_pred HHHHHhhcCCeeeEEEEEeCCc-ceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 279 LHRHFHSLGAGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 279 L~~~F~~~G~~~i~~i~~~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
|+++|++|| .|.++.+.+++ ++|||+|.+.++|..|++.|||. .++|++|+|.|+
T Consensus 1 L~~~f~~fG--~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~---~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGR---QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTS---EETTEEEEEEEE
T ss_pred ChHHhCCcc--cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEC
Confidence 688999999 99999999987 99999999999999999999999 999999999985
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.4e-11 Score=87.29 Aligned_cols=68 Identities=40% Similarity=0.702 Sum_probs=63.5
Q ss_pred eEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCc----ceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK----GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 264 ~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
+|+|+|||..+++++|+++|+.|| .+.++.+.+++ ++|||+|.+.++|.+|++.+++. .+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g--~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~---~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG--PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT---KLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc---EECCEEEeeC
Confidence 489999999999999999999999 88999988875 99999999999999999999998 8999999874
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=1.1e-11 Score=87.62 Aligned_cols=71 Identities=38% Similarity=0.713 Sum_probs=66.3
Q ss_pred EcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 146 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 146 v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999998873
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=8.3e-12 Score=110.65 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=121.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc---c-CCcceEEEeec---CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSS---T-GPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~---~-G~v~~v~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
.-.|.+++||+++++.|+.+||.+ . |.++.|.+++. +-+|-|||.|..+++|..|+.. |...++-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 345899999999999999999963 2 24556666554 3479999999999999999975 34444444444422
Q ss_pred ccc----------------------------cCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCC-c--eEEEEeecC
Q 014955 129 AYA----------------------------SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-C--SDARVMWDQ 177 (415)
Q Consensus 129 ~~~----------------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v--~~~~~~~~~ 177 (415)
+.. ...........+|.+.+||.+.+.++|.++|..|-. | ..|+++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 110 000112233568999999999999999999998853 3 23777777
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 178 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..|++.|-|||+|.+.++|..|....+.+..++|.|.|--+.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 578999999999999999999999999888889999987553
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=103.25 Aligned_cols=75 Identities=32% Similarity=0.518 Sum_probs=65.1
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC------CcceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
...++|||++|++.+..++|+++|++|| +|.+..+.. +|||+||+|+|.++|.+|++-.|- .|+||+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfG--eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p----iIdGR~a 83 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFG--EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP----IIDGRKA 83 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhC--ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC----ccccccc
Confidence 3457899999999999999999999999 888887764 489999999999999999986554 6999999
Q ss_pred EEeeCCC
Q 014955 334 KCSWGSK 340 (415)
Q Consensus 334 ~v~~a~~ 340 (415)
.|..+.-
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9987654
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.3e-12 Score=95.07 Aligned_cols=85 Identities=24% Similarity=0.445 Sum_probs=79.2
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.....|||.++....+|++|.+.|..||+|.++++-.|+.+|-.+||++|+|++.++|.+|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
..+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 65443
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=7.8e-12 Score=84.04 Aligned_cols=56 Identities=36% Similarity=0.650 Sum_probs=51.5
Q ss_pred HHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 73 LQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 73 l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
|+++|++||.|.+|.+.+++ +++|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998777 589999999999999999999999999999999875
No 104
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.7e-12 Score=104.50 Aligned_cols=83 Identities=36% Similarity=0.576 Sum_probs=76.1
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
..++|||++|-.++++.-|...|=+|| +|.+|.++-+ |||+||+|...++|..|+..||+. ++.||.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG--DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes---EL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG--DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES---ELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc--chhhcccccchhcccccceeEEEeeccchhHHHhhcCchh---hhcceeEE
Confidence 458999999999999999999999999 9999999855 899999999999999999999999 99999999
Q ss_pred EeeCCCCCCCCCCC
Q 014955 335 CSWGSKPTPPGTSS 348 (415)
Q Consensus 335 v~~a~~~~~~~~~~ 348 (415)
|.|+++......+.
T Consensus 84 VN~AkP~kikegsq 97 (298)
T KOG0111|consen 84 VNLAKPEKIKEGSQ 97 (298)
T ss_pred EeecCCccccCCCC
Confidence 99999876665544
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=2.7e-11 Score=86.40 Aligned_cols=71 Identities=35% Similarity=0.703 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. .++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988763 68999999999999999999999999999998864
No 106
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=3e-11 Score=103.96 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=72.7
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCe
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (415)
...+.+||||+-|+++++|.+|+..|+.|| .|+.|++.++ +|||||+|++..+...|.+..+|. .|+|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG--~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~---~Idgr 171 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYG--PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI---KIDGR 171 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcC--cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc---eecCc
Confidence 346679999999999999999999999999 9999999876 799999999999999999999999 99999
Q ss_pred eeEEeeCCCC
Q 014955 332 QMKCSWGSKP 341 (415)
Q Consensus 332 ~l~v~~a~~~ 341 (415)
.|.|.+-+-.
T Consensus 172 ri~VDvERgR 181 (335)
T KOG0113|consen 172 RILVDVERGR 181 (335)
T ss_pred EEEEEecccc
Confidence 9999986543
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=1.9e-11 Score=86.30 Aligned_cols=67 Identities=37% Similarity=0.681 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 61 v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
|+|||..+++++|+++|+.||.|..+.+..++. +++|||+|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999988754 6899999999999999999999999999988763
No 108
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=93.11 Aligned_cols=81 Identities=28% Similarity=0.482 Sum_probs=73.1
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCe
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (415)
.....+.|||.+++...++++|.+.|..|| +|+.|.+.-+ +|||+|+|.+.++|..|+..+||. .+.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyG--eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~---~ll~q 142 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYG--EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA---ELLGQ 142 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcc--cccceeeccccccccccceeeeehHhHHHHHHHHHhccch---hhhCC
Confidence 344558999999999999999999999999 8999988755 799999999999999999999999 99999
Q ss_pred eeEEeeCCCCCC
Q 014955 332 QMKCSWGSKPTP 343 (415)
Q Consensus 332 ~l~v~~a~~~~~ 343 (415)
+|.|.|+-...+
T Consensus 143 ~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 143 NVSVDWCFVKGP 154 (170)
T ss_pred ceeEEEEEecCC
Confidence 999999875544
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.24 E-value=8.4e-11 Score=111.83 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=122.8
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.+.+.+.+++.+.++.|++++|... .+..+.+..+...+...|.++|+|....++.+|+.. +...+-.|.+.+.....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 3456678899999999999998653 455566665655555578899999999999999873 55555667777654432
Q ss_pred CCCCCccccccccc---ccccccCC-CCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEE-EE
Q 014955 221 GAGNNEDKQSSDAK---SVVELTNG-SSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VR 295 (415)
Q Consensus 221 ~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~-i~ 295 (415)
..-........... ........ .............+.......+|||..||..+++.++.+.|...- .|++ |.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~Ved~I~ 466 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AVEDFIE 466 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh--hhhheeE
Confidence 21111100000000 00000000 000111111122334445568999999999999999999998764 4555 66
Q ss_pred EeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 296 VQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 296 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
|-+. ++.|||.|.+.+++..|...-+.+ .++.+.|+|.-
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~---y~G~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKF---YPGHRIIRVDS 510 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhccccc---ccCceEEEeec
Confidence 5543 689999999999999998876777 78889999964
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=9.3e-11 Score=83.55 Aligned_cols=74 Identities=39% Similarity=0.773 Sum_probs=68.1
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ .++|++||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 7789999999999999999999999999999998864
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3e-12 Score=105.12 Aligned_cols=144 Identities=24% Similarity=0.356 Sum_probs=119.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+...+||||.|+-..++|+-|.++|-..|+|.+|.|..++ ...||||.|.++-+...|++.+||..+.++++++.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3456899999999999999999999999999999997765 34599999999999999999999999999999996543
Q ss_pred ccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
.... .-|...++++.+.+.|+.-|++..+++..+. +|+++.+.|+.+......-.++....+....
T Consensus 86 G~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 86 GNSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCCc------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 2211 0166678899999999999999999999884 5888999999998888777787765555443
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.7e-10 Score=106.92 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=110.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC------CCc---eEEEEEecHHHHHHHHHHhCC---cc-c
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSS---YGFIHYFDRRSAAMAILSLNG---RH-L 119 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g---~afV~f~~~~~A~~a~~~l~~---~~-~ 119 (415)
+.-++.||||+||++++|+.|...|..||.+.--.-.+.. .+| |+|+-|+++.+...-+..... .. |
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3446789999999999999999999999986321111111 135 999999999998876654322 11 1
Q ss_pred -------cCCceeeecccc-c-----CCCCCCCCcceEEEcCCCcccCHHHHHHHhc-CCCCceEEEEeecCCCCCcceE
Q 014955 120 -------FGQPIKVNWAYA-S-----GQREDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGF 185 (415)
Q Consensus 120 -------~g~~l~v~~~~~-~-----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~ 185 (415)
..+.+.|..-.. . ......++.+|||||+||..++.++|..+|+ -||.|.-+-|-.|++-+-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 122233321110 0 1122346678999999999999999999998 6999999999999777789999
Q ss_pred EEEEEcCHHHHHHHHHH
Q 014955 186 GFVSFRNQQDAQSAIND 202 (415)
Q Consensus 186 afv~f~~~~~a~~a~~~ 202 (415)
+-|.|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999874
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=6.1e-11 Score=83.55 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=54.6
Q ss_pred HHHHHHHhc----CCCCceEEE-EeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 155 DATLFACFS----VYPSCSDAR-VMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 155 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
+++|+++|+ .||.|.++. +..++.+ +.++||+||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6666656 889999999999999999999999999999999986
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.8e-12 Score=124.87 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=180.8
Q ss_pred cceEEEcCCCCCCCHH-HHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 56 CRSVYVGNIHTQVTEP-LLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~-~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
.+...+.++.+..... ..+..|..+|.|++|++...+. ..+.++.+....+++.+.. ..+.-+.++...+..++
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3456677777665554 6788999999999998876321 2378899999999999874 57788888888888776
Q ss_pred ccCCCCCC-------CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 014955 131 ASGQREDT-------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (415)
Q Consensus 131 ~~~~~~~~-------~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (415)
........ ....++|++||+..+.+.+|...|..+|.+..+.+.....+++.+|+||++|.+.+++.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 65432211 23357899999999999999999999998888777655567899999999999999999999854
Q ss_pred CCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHH
Q 014955 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (415)
Q Consensus 204 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F 283 (415)
.++.++ + ..|+|.|.|+..|.++|+.+|
T Consensus 730 d~~~~g-K---------------------------------------------------~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 730 DSCFFG-K---------------------------------------------------ISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred hhhhhh-h---------------------------------------------------hhhheeCCCCCCchHHHHhhc
Confidence 444333 0 359999999999999999999
Q ss_pred hhcCCeeeEEEEEeC-----CcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 284 HSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 284 ~~~G~~~i~~i~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
.++| .+.++++.. .+|.|+|.|.+..++.++....... .+..+.+.|..+++
T Consensus 758 ~~~g--n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~---~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 758 SKTG--NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA---GKRENNGEVQVSNP 814 (881)
T ss_pred cccC--CccccchhhhhccccccceeccCCCcchhhhhcccchhh---hhhhcCccccccCC
Confidence 9999 777776553 3799999999999999999888887 77777777777554
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.17 E-value=6e-10 Score=106.16 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=117.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEee----cCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
+-+-+.+.+....+.|++++|... .|..+.+.. ...+|-++|.|....++.+|+.. |...+-.+.+.+....+.
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 447889999999999999999742 233333333 23478999999999999999864 666666677777544321
Q ss_pred CC------------------------------------CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceE-EEEee
Q 014955 133 GQ------------------------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMW 175 (415)
Q Consensus 133 ~~------------------------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~ 175 (415)
.+ +.......+|||..||..+++.++.++|...-.|++ |.+.+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~ 469 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR 469 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc
Confidence 10 011134578999999999999999999998777777 66655
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 176 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 176 ~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+ +++.++.|||+|.+++++..|...-+.++++.+.|+|.-.
T Consensus 470 ~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 470 LP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 53 5788899999999988888887655666778888888643
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.1e-11 Score=120.90 Aligned_cols=143 Identities=16% Similarity=0.266 Sum_probs=120.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEe----ecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI----RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
.++||+||+..+.++||...|..+|.+..+.+. .++-+|+|||.|.+++++.+|+....+ .+.|+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~gK---------- 736 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFGK---------- 736 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhhh----------
Confidence 568999999999999999999999988776655 233469999999999999999975444 44441
Q ss_pred CCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 133 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 133 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
..|+|.|.|...|.++++.+|..+|.+.+++++.. ..|+++|.++|.|.++.++.++....+...+..+.
T Consensus 737 ---------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 737 ---------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 36889999999999999999999999999987766 57899999999999999999999888877777777
Q ss_pred EEEEEccC
Q 014955 213 IRCNWATK 220 (415)
Q Consensus 213 l~v~~a~~ 220 (415)
+.|..+.+
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 77766544
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.16 E-value=3.7e-11 Score=101.10 Aligned_cols=161 Identities=29% Similarity=0.458 Sum_probs=126.0
Q ss_pred EEEcCCCCCCCHHH---HHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 59 VYVGNIHTQVTEPL---LQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 59 v~v~nlp~~~t~~~---l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
.+++++-..+..+- +...|+.|-.+...++++++ .++++|+.|.....-.++-..-+++.+.-..|++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44455444443333 36677777776666666654 4689999999888777777666777776666776544333
Q ss_pred CC---CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 133 GQ---REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 133 ~~---~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
.. .+...++++||.+.|..+++.+-|...|.+|-.....++++|+.+|+++||+||-|.+..++..|+..++|++++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 22 233456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEcc
Q 014955 210 SRQIRCNWAT 219 (415)
Q Consensus 210 g~~l~v~~a~ 219 (415)
.++|++.-+.
T Consensus 259 srpiklRkS~ 268 (290)
T KOG0226|consen 259 SRPIKLRKSE 268 (290)
T ss_pred cchhHhhhhh
Confidence 9999986543
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=7.4e-11 Score=113.73 Aligned_cols=106 Identities=25% Similarity=0.365 Sum_probs=87.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCC
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (415)
++||||++|+..++|.||.++|+.||.|.+|.++..+ +||||.+.+..+|.+|+..|+...+.++.|+|.|+..+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 5899999999999999999999999999999997766 69999999999999999999999999999999999887655
Q ss_pred CC--CCCcceEEEcCCCcccCHHHHHHHhc
Q 014955 136 ED--TSGHFNIFVGDLSPEVTDATLFACFS 163 (415)
Q Consensus 136 ~~--~~~~~~l~v~nlp~~~~~~~l~~~f~ 163 (415)
.+ ..-+..+=|.-||+.--.+++..+++
T Consensus 499 se~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 499 SEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 52 22223344566677644444666665
No 119
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=4.8e-12 Score=100.89 Aligned_cols=74 Identities=28% Similarity=0.490 Sum_probs=69.0
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
.-|||+|||+.+||.||.-+|++|| +|++|.+.|+ +||||+.|++......|+..|||. .+.||.|+|.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyG--e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi---ki~gRtirVD 110 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYG--EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI---KILGRTIRVD 110 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccC--ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc---eecceeEEee
Confidence 4599999999999999999999999 9999999987 799999999999999999999999 9999999998
Q ss_pred eCCCC
Q 014955 337 WGSKP 341 (415)
Q Consensus 337 ~a~~~ 341 (415)
.....
T Consensus 111 Hv~~Y 115 (219)
T KOG0126|consen 111 HVSNY 115 (219)
T ss_pred ecccc
Confidence 76543
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=9.7e-11 Score=109.95 Aligned_cols=78 Identities=35% Similarity=0.586 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
++|||||||+++++++|.++|+..|.|.+++++.|+. +||+|++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7799999999999999999999999999999999874 589999999999999999999999999999999998665
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.6e-10 Score=111.43 Aligned_cols=80 Identities=24% Similarity=0.423 Sum_probs=74.8
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
-++||||++|+.++++.||..+|+.|| +|.+|.+..+++||||.+.+..+|.+|+.+|+.. .+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG--eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~---kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG--EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV---KVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc--cceeEeeccCCceeEEEEeehhHHHHHHHHHhcc---cccceeeEEeeecc
Confidence 358999999999999999999999999 9999999999999999999999999999999999 89999999999886
Q ss_pred CCCCC
Q 014955 341 PTPPG 345 (415)
Q Consensus 341 ~~~~~ 345 (415)
+....
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65443
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4e-10 Score=99.17 Aligned_cols=81 Identities=30% Similarity=0.548 Sum_probs=72.2
Q ss_pred CCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 256 ~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
+.....-.+|||++|-..+++.||+++|.+|| +|+.|++...++||||+|.+.++|..|.++.-.. ..++|.+|+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~--lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK--LVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecccccceeeehhhHHHHHHHHhhcce--eeecceEEEE
Confidence 34445568999999999999999999999999 9999999999999999999999999998766543 2899999999
Q ss_pred eeCCC
Q 014955 336 SWGSK 340 (415)
Q Consensus 336 ~~a~~ 340 (415)
.|++.
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-10 Score=101.30 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=79.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
..++.+.|||-.|++-++.++|.-+|+.||.|.++.|++|+++|.+..||||+|++.+++++|.-.|++..|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC
Q 014955 217 WATK 220 (415)
Q Consensus 217 ~a~~ 220 (415)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9855
No 124
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7.8e-09 Score=96.05 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=106.5
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCC-C--CCcce---EEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-T--GRSRG---FGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~--~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
...+.|||++||++++|+.|...|..||.+. |......+ . -.++| |+|+.|+++.....-+.++.- +...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 4457899999999999999999999999873 33332111 1 13566 999999999988887765532 3333
Q ss_pred EEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHh-hcCCeee
Q 014955 213 IRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH-SLGAGVI 291 (415)
Q Consensus 213 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~-~~G~~~i 291 (415)
+.+..+.+.......+ ..+.......... .......+.+||||++||.-++.++|-.+|+ -|| .|
T Consensus 333 ~yf~vss~~~k~k~VQ----IrPW~laDs~fv~--------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG--gV 398 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQ----IRPWVLADSDFVL--------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--GV 398 (520)
T ss_pred eEEEEecCccccccee----EEeeEeccchhhh--------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcC--ce
Confidence 3333322221111100 0000000000000 0122334558999999999999999999999 899 56
Q ss_pred EEEEEeCC------cceEEEEeCCHHHHHHHHHH
Q 014955 292 EEVRVQRD------KGFGFVRYSTHAEAALAIQM 319 (415)
Q Consensus 292 ~~i~~~~~------~g~afV~f~~~~~A~~A~~~ 319 (415)
..+-|.-| +|-|-|+|.+..+-.+|+.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 66666554 79999999999999999863
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=5.3e-10 Score=109.75 Aligned_cols=162 Identities=19% Similarity=0.314 Sum_probs=136.3
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
..+++||++||+..+++.+|+..|..+|.|.+|.|...+ -+.-.-|+||.|.+...+..|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 456899999999999999999999999999999887552 2344458999999999999999889988886656655544
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~ 298 (415)
..+ ....+.+|+++|+.-+....|...|..|| .|..|.+..
T Consensus 449 ~~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy~h 489 (975)
T KOG0112|consen 449 QPK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDYRH 489 (975)
T ss_pred ccc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccC--cceeeeccc
Confidence 321 11236799999999999999999999999 788888888
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeCCCCCC
Q 014955 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTP 343 (415)
Q Consensus 299 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~~~~~ 343 (415)
.-.|++|.|.+...+..|+..|.|. .|++ ++++|.|+..+..
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rga---p~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGA---PLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcC---cCCCCCcccccccccCCCC
Confidence 8889999999999999999999999 6776 7899999987654
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=87.44 Aligned_cols=83 Identities=17% Similarity=0.358 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCC-CCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
.....+++..+|.-..+.++..+|..| |.|..+++-|++.||.++|||||+|++++.|+-|-+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334578999999999999999999998 7888888889999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014955 218 ATKG 221 (415)
Q Consensus 218 a~~~ 221 (415)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8765
No 127
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=2.3e-09 Score=75.48 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=49.3
Q ss_pred HHHHHHHHh----ccCCcceEE-Eeec------CCCceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 70 EPLLQEVFS----STGPVEGCK-LIRK------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 70 ~~~l~~~f~----~~G~v~~v~-~~~~------~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
+++|+++|+ .||.|.+|. +..+ ..+||+||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 4433 24799999999999999999999999999999876
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=2.7e-10 Score=93.74 Aligned_cols=133 Identities=24% Similarity=0.298 Sum_probs=110.8
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...++|||+|+...++|+-|.++|-.-|+|..|.|..++ .++.+ ||||.|.++.....|++.+||..+.++.+.+++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc-
Confidence 445799999999999999999999999999999988764 56667 999999999999999999999999999888753
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEcc----CCccCCHHHHHHHHhhcCCeeeEEE
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN----LAPEVTQLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~~~~~L~~~F~~~G~~~i~~i 294 (415)
+.++ |...++++.+.++|+.-| .++.+
T Consensus 84 -----------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~--p~~~~ 114 (267)
T KOG4454|consen 84 -----------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAG--PIEGV 114 (267)
T ss_pred -----------------------------------------------ccCCCcchhhhhcchhhheeeecccC--CCCCc
Confidence 3344 566788888899999888 78888
Q ss_pred EEeCC-----cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 295 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
++.++ +.+.|+.+-..-..-.++....+.
T Consensus 115 R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 115 RIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 77653 678888887776667777766665
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=5e-09 Score=92.38 Aligned_cols=77 Identities=18% Similarity=0.459 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHH-hCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS-LNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~~ 131 (415)
+....+|||++|-..++|.+|+++|-+||+|++|.++..+ ++|||+|.+.++|+.|.+. +|...+.|++|+|.|..+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4567899999999999999999999999999999998876 4999999999999998855 565678999999999887
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=5e-09 Score=88.44 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=115.5
Q ss_pred ceEEEcCCCcccCHHH---HHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 142 FNIFVGDLSPEVTDAT---LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~---l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...+++++-..+..+- +...|+.|-.+....++++. -+..++++|+.|.....-.++-..-++++++-+.++..-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4555666555544443 25677777777777777774 4677889999998887777776666777777666554322
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcC----CeeeEEE
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEV 294 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G----~~~i~~i 294 (415)
..-.... ..+-.....+||.+.|..+++++-|...|.+|- .-.|++-
T Consensus 176 tswedPs-----------------------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk 226 (290)
T KOG0226|consen 176 TSWEDPS-----------------------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK 226 (290)
T ss_pred cccCCcc-----------------------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccc
Confidence 1110000 000111225799999999999999999999986 3345555
Q ss_pred EEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 295 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 295 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
+..+.+||+||.|.+..++.+|+..|+|+ .++.++|+++
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gk---yVgsrpiklR 265 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGK---YVGSRPIKLR 265 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhccc---ccccchhHhh
Confidence 66666899999999999999999999999 9999999875
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.5e-09 Score=91.67 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=71.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCc----eEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g----~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+-..|||..|.+-++.+||.-+|+.||.|.+|.++++..+| ||||+|.+.+++++|.-.|++..|..+.|+|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 33469999999999999999999999999999999998775 99999999999999999999999999999999875
Q ss_pred c
Q 014955 131 A 131 (415)
Q Consensus 131 ~ 131 (415)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=6.5e-09 Score=102.29 Aligned_cols=160 Identities=19% Similarity=0.350 Sum_probs=135.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+....+|||++||+..+++.+|+..|..+|.|.+|.|-... ...|+||.|.+...+-.|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 44567899999999999999999999999999999886653 236999999999999999999999888877777766
Q ss_pred ccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
... ....+..+++++|..-+....|...|..||.|..|.+- +...|++|.|++...+..|++.+.|..+
T Consensus 448 G~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcC
Confidence 543 34566789999999999999999999999999887664 2334899999999999999999999998
Q ss_pred CC--eeEEEEEccCCC
Q 014955 209 GS--RQIRCNWATKGA 222 (415)
Q Consensus 209 ~g--~~l~v~~a~~~~ 222 (415)
++ +.++|.|+....
T Consensus 517 G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCcccccccccCCC
Confidence 64 678888876543
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=5.6e-09 Score=97.82 Aligned_cols=182 Identities=18% Similarity=0.230 Sum_probs=117.4
Q ss_pred CCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 014955 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (415)
Q Consensus 134 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (415)
..+.+.++.+|+|-|||.++++++|+.+|+.||+|..|+.. ...+|.+||+|.|..+|++|+++|++..+.|+.|
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 34446677899999999999999999999999999996543 4567899999999999999999999999999988
Q ss_pred EEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEE
Q 014955 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293 (415)
Q Consensus 214 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~ 293 (415)
+. +............ ..+..... .......+...+. ..+++ .|++..+..-++..|.-+| .+..
T Consensus 143 k~----~~~~~~~~~~~~~----~~~~~~~~----~p~a~s~pgg~~~-~~~~g-~l~P~~s~~~~~~~~~~~~--~~~~ 206 (549)
T KOG4660|consen 143 KR----PGGARRAMGLQSG----TSFLNHFG----SPLANSPPGGWPR-GQLFG-MLSPTRSSILLEHISSVDG--SSPG 206 (549)
T ss_pred cC----CCcccccchhccc----chhhhhcc----chhhcCCCCCCcC-Cccee-eeccchhhhhhhcchhccC--cccc
Confidence 82 2111111111111 00000000 0000011111111 22333 2888888877777788887 4444
Q ss_pred EEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 294 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 294 i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
-....-+..-|++|.+..++..+...+ |+ .+.+....+.|...
T Consensus 207 ~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~---~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 207 RETPLLNHQRFVEFADNRSYAFSEPRG-GF---LISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhhhhhhhccccchhhcccCC-ce---ecCCCCceEEecCC
Confidence 222222346788888888886666544 55 77777777777655
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.77 E-value=9.9e-09 Score=92.22 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=132.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeec----CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..++.|++++...+.+.+...++..+|.+....+... ..+|++++.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4677999999999999999999999997666555442 346899999999999999986543345555544443332
Q ss_pred ccC-------CCCCCCCcceEE-EcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 014955 131 ASG-------QREDTSGHFNIF-VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (415)
Q Consensus 131 ~~~-------~~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (415)
... .+.......++| |++++.++++++|+..|..+|.|..+++..++.++..+||+||+|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 221 122223334455 999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCceeCCeeEEEEEccCCC
Q 014955 203 LTGKWLGSRQIRCNWATKGA 222 (415)
Q Consensus 203 l~~~~~~g~~l~v~~a~~~~ 222 (415)
....+.++++.+.+..+..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 7889999999999876643
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.75 E-value=2.9e-08 Score=92.86 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...+.|||.+|...+...+|+.+|++||.|+..+|+.+..+.-.++|+||++.+.++|.+||+.|+...+.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999988777788999999999999999999999999999999999987
Q ss_pred cC
Q 014955 219 TK 220 (415)
Q Consensus 219 ~~ 220 (415)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 54
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=5e-08 Score=93.68 Aligned_cols=81 Identities=31% Similarity=0.556 Sum_probs=72.4
Q ss_pred CCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC---------CcceEEEEeCCHHHHHHHHHHhcCCCccc
Q 014955 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSY 327 (415)
Q Consensus 257 ~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 327 (415)
...|..++|||+||++.++++.|...|..|| .|..++|+- ++.|+||.|-+..+|.+|++.|+|. .
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfg--PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~---i 243 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFG--PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI---I 243 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccC--cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce---e
Confidence 3456678899999999999999999999999 888888862 3689999999999999999999999 9
Q ss_pred cCCeeeEEeeCCCCC
Q 014955 328 LFGKQMKCSWGSKPT 342 (415)
Q Consensus 328 ~~g~~l~v~~a~~~~ 342 (415)
+.+..+++.|++.-.
T Consensus 244 v~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 244 VMEYEMKLGWGKAVP 258 (877)
T ss_pred eeeeeeeeccccccc
Confidence 999999999997543
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.68 E-value=2.2e-08 Score=89.98 Aligned_cols=173 Identities=25% Similarity=0.279 Sum_probs=128.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
...++|++++...+.+.+...++..+|.+....+........++|++++.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45689999999999888888899999988777776655677899999999999999999998433345555554443332
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
......... ............++|+++++++++++|+.+|..+| .|..++++..
T Consensus 167 ~~~~~~~n~------------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGLRPKNK------------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPTD 220 (285)
T ss_pred cccccccch------------------------hcccccCccccceeecccccccchHHHhhhccCcC--cceeeccCCC
Confidence 221000000 00001112223345999999999999999999999 8989888764
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 342 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 342 (415)
+|++||.|.+...+..++.. ... .++++++.+.+.+...
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTR---SIGGRPLRLEEDEPRP 265 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccC---cccCcccccccCCCCc
Confidence 78999999999999999887 666 8999999999987643
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=1e-07 Score=91.55 Aligned_cols=75 Identities=27% Similarity=0.567 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-------CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
.+.|||+||++.++++.|...|..||+|.+|+|+..++ +.|+||-|.+..||++|+..|+|..+.+.++++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 35599999999999999999999999999999998763 46999999999999999999999999999999999
Q ss_pred cc
Q 014955 129 AY 130 (415)
Q Consensus 129 ~~ 130 (415)
..
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 84
No 139
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=77.60 Aligned_cols=74 Identities=23% Similarity=0.482 Sum_probs=67.1
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
..++|..+|..+.+.+|..+|.+|| +.+..+++.|+ +|||||+|.+.+.|.-|-+.||++ .|.++.|.|.
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY---Ll~e~lL~c~ 125 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY---LLMEHLLECH 125 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh---hhhhheeeeE
Confidence 4689999999999999999999995 38888888665 799999999999999999999999 9999999999
Q ss_pred eCCC
Q 014955 337 WGSK 340 (415)
Q Consensus 337 ~a~~ 340 (415)
|..+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 8654
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.58 E-value=3.9e-07 Score=67.28 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=68.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCC--CCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC----CeeEEE
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG----SRQIRC 215 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 215 (415)
++|.|.|+|...+.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.+.+-.+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 77788889999889999999999999999999999999999884 566677
Q ss_pred EEccC
Q 014955 216 NWATK 220 (415)
Q Consensus 216 ~~a~~ 220 (415)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.4e-07 Score=80.23 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
+.....|+|.|||..++++||+++|..||.+..+.+.++ .+|.+.|.|-|.|...++|..|++.++|..++|+.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344468999999999999999999999999999988888 5799999999999999999999999999999999999987
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
......
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 655443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.54 E-value=7.3e-07 Score=62.36 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=49.8
Q ss_pred eeEEEccCCccCCHH----HHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 263 TTVYVGNLAPEVTQL----DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~----~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
..|+|.|||.+.+.. -|+.++..+| +.|..|. .+.|+|.|.+.+.|.+|.+.|+|. .+.|++|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v~----~~tAilrF~~~~~A~RA~KRmegE---dVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSVS----GGTAILRFPNQEFAERAQKRMEGE---DVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEEe----CCEEEEEeCCHHHHHHHHHhhccc---ccccceEEEEEc
Confidence 469999999988765 5667888998 4777773 589999999999999999999999 899999999997
Q ss_pred CC
Q 014955 339 SK 340 (415)
Q Consensus 339 ~~ 340 (415)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=3.5e-07 Score=85.76 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=68.7
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
...++|||.+|...+...||+.+|++|| .|+-.++..+ +.|+||++.+.++|.++++.||.. ++.|+-|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyG--KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT---ELHGrmI 477 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYG--KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT---ELHGRMI 477 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhc--ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh---hhcceee
Confidence 3457899999999999999999999999 7777776644 789999999999999999999999 9999999
Q ss_pred EEeeCCCC
Q 014955 334 KCSWGSKP 341 (415)
Q Consensus 334 ~v~~a~~~ 341 (415)
.|.-+++-
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 99987753
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.50 E-value=3.1e-07 Score=86.07 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=63.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEee----cCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
.....+|||+|||.++++++|.++|..||+|+...|.. ++...||||+|.+.+++..|++. +...+.++++.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34456699999999999999999999999999877755 23348999999999999999975 57778889998874
Q ss_pred c
Q 014955 129 A 129 (415)
Q Consensus 129 ~ 129 (415)
-
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=8.1e-07 Score=76.96 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=69.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
...+|+|.|||+.++++||+++|..||.+..+-+-.++. .|+|-|.|...+||..|++.+++..+.|+.+++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 346799999999999999999999999888888877764 48999999999999999999999999999999886544
Q ss_pred c
Q 014955 132 S 132 (415)
Q Consensus 132 ~ 132 (415)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.37 E-value=2.7e-06 Score=62.81 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=60.9
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccC-CeeeEE
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKC 335 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v 335 (415)
+||.|+|||...|.++|.+++...-.+....+.++-| .|||||.|.+.+.|.+-.+.++|+.+..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999987653334444444433 799999999999999999999999543343 466788
Q ss_pred eeCCC
Q 014955 336 SWGSK 340 (415)
Q Consensus 336 ~~a~~ 340 (415)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.33 E-value=5.3e-08 Score=88.00 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=118.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCC-ceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCCeeEEEEEcc
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWAT 219 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~~~g~~l~v~~a~ 219 (415)
+.+|++||.+.++..+|..+|...-. ...-.++ -.||+||.+.+...|.+|++.++|+ .+.|.++.+.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999975411 1111122 2369999999999999999999996 6789999998876
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC-
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~- 298 (415)
++.... +.+-|.|+|+..-++.|..+...|| .++.|....
T Consensus 75 ~kkqrs-------------------------------------rk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt 115 (584)
T KOG2193|consen 75 PKKQRS-------------------------------------RKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNT 115 (584)
T ss_pred hHHHHh-------------------------------------hhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhcc
Confidence 654321 4589999999999999999999999 666665432
Q ss_pred C--cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 299 D--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 299 ~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
+ .-..-|+|.+.+.+..|+..++|. .+.+..++|.|--
T Consensus 116 ~~etavvnvty~~~~~~~~ai~kl~g~---Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 116 DSETAVVNVTYSAQQQHRQAIHKLNGP---QLENQHLKVGYIP 155 (584)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcch---HhhhhhhhcccCc
Confidence 2 223346899999999999999999 9999999999854
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=9.7e-07 Score=76.75 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+...+||+|+...++.+++...|+.||.+..+.+..|+..+.++||+||+|.+.+.++.++. |++..+.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4455789999999999999999999999999999999998888899999999999999999999 999999999999987
Q ss_pred ccCC
Q 014955 218 ATKG 221 (415)
Q Consensus 218 a~~~ 221 (415)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6543
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.25 E-value=2e-06 Score=80.74 Aligned_cols=78 Identities=27% Similarity=0.454 Sum_probs=66.4
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.+|||.|||.+++.++|.++|..||.|+...|......++..+|+||+|.+.+++..++++ +-..++++.+.|+-...
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999999999999999999999999988765432344449999999999999999985 57888999999986554
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.22 E-value=4.4e-07 Score=82.20 Aligned_cols=154 Identities=24% Similarity=0.372 Sum_probs=120.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcc-ccCCceeeecccccCCCC
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH-LFGQPIKVNWAYASGQRE 136 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~l~v~~~~~~~~~~ 136 (415)
.+|++||.+.++.+||..+|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|+. +.|+.+.+...-++..+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 489999999999999999997542111111111 23799999999999999999999965 789999998776654332
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+.+-|.|+|+...++-|..+...||.++.+.... +..-.-..-|+|...+.+..|+..++|..+.+..+++.
T Consensus 81 -----rk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 81 -----RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred -----hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 4588999999999999999999999999886541 11111123477889999999999999999999999999
Q ss_pred EccCC
Q 014955 217 WATKG 221 (415)
Q Consensus 217 ~a~~~ 221 (415)
|-...
T Consensus 153 YiPde 157 (584)
T KOG2193|consen 153 YIPDE 157 (584)
T ss_pred cCchh
Confidence 87553
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.21 E-value=2.2e-06 Score=76.99 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=113.0
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCC---CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.|.|.||.++++.+.++.+|...|.|..+.+..+... ......|||.|.+...+..|-. |.+..|-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7889999999999999999999999999988754221 2356689999999999888875 77777777777665432
Q ss_pred CCCCCCccc--cccccccccc-c-cCCCCcCCcCC--------CCCCCCC---------CCCcceeEEEccCCccCCHHH
Q 014955 220 KGAGNNEDK--QSSDAKSVVE-L-TNGSSEDGKET--------TNTEAPE---------NNPQYTTVYVGNLAPEVTQLD 278 (415)
Q Consensus 220 ~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~--------~~~~~~~---------~~~~~~~l~v~nlp~~~~~~~ 278 (415)
......... ...+...... + .++........ ..-..+. ...-.++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 222111100 0000000000 0 00000000000 0000000 011126899999999999999
Q ss_pred HHHHHhhcCCeeeEEEEEeCC--cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 279 LHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 279 L~~~F~~~G~~~i~~i~~~~~--~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
+.+.|..+| +|...++-.. .-+|.|+|........|+. ++|.
T Consensus 168 ~~e~f~r~G--ev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 168 SGESFERKG--EVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred hhhhhhhcc--hhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 999999999 6766666543 5677899988888888876 4666
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=7.6e-06 Score=57.37 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=47.2
Q ss_pred eEEEcCCCCCCCHHH----HHHHHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 58 SVYVGNIHTQVTEPL----LQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~----l~~~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
.|+|.|||.+.+-.. |+.++..+| .|.+| ..+.|.|.|.+.+.|.+|.+.|+|..++|.+|.|.+....
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 589999999888665 556666787 45554 1358999999999999999999999999999999987544
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.17 E-value=1.2e-06 Score=78.80 Aligned_cols=147 Identities=17% Similarity=0.121 Sum_probs=111.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-------CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-------KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-------~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
..|.|.||.+.+|.+.++.+|...|.|.++.++... ....|||.|.|...+.-|- .|...+|-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 369999999999999999999999999999998743 1369999999999988885 46677777776666543
Q ss_pred cccCCC--------------------------------CC---------------------CCCcceEEEcCCCcccCHH
Q 014955 130 YASGQR--------------------------------ED---------------------TSGHFNIFVGDLSPEVTDA 156 (415)
Q Consensus 130 ~~~~~~--------------------------------~~---------------------~~~~~~l~v~nlp~~~~~~ 156 (415)
...... .. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 221100 00 0112578999999999999
Q ss_pred HHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 157 ~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
++.++|..+|.|...++- .+....+|.++|........|+. .+|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999777664 23444567799988888888887 5776654
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=1.4e-05 Score=60.56 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=40.7
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g 322 (415)
..|+|.+++..++.++|+++|+.|| .|..|.+.+....|||.|.+.+.|..|+..+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCCCCEEEEEECCcchHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999999999999999999987653
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.94 E-value=1.3e-05 Score=69.81 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.+.+++||+|+.+.++.+++...|+.+|.|..|.+..++. +||+||+|.+.+.+.+++. ||+..+.|+.+.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3557799999999999999999999999999888888763 5799999999999999997 9999999999999865
Q ss_pred ccc
Q 014955 130 YAS 132 (415)
Q Consensus 130 ~~~ 132 (415)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 433
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=2.7e-05 Score=59.04 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=39.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 117 (415)
+.|+|.+++.+++.++|++.|+.||.|.-|.+..... .|||.|.+.++|.+|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4589999999999999999999999998888877554 7999999999999999876543
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=8.1e-05 Score=48.64 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=44.5
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHH
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~ 317 (415)
+.|-|.+.+.+..+ +++.+|..|| +|.++.+...+.+.+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fG--eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFG--EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcC--CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 46888888877665 4555888999 9999999988899999999999999985
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.72 E-value=7.5e-05 Score=63.81 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCccccCCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceE
Q 014955 106 SAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 185 (415)
Q Consensus 106 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~ 185 (415)
-|..|..+|++....|+.++|.|+.. ..|+|.||...++.+.+...|+.||+|....+..| ..+++.+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccccccc
Confidence 46677778999999999999999865 27999999999999999999999999998877777 46788888
Q ss_pred EEEEEcCHHHHHHHHHHhCC
Q 014955 186 GFVSFRNQQDAQSAINDLTG 205 (415)
Q Consensus 186 afv~f~~~~~a~~a~~~l~~ 205 (415)
++|+|...-.+.+|...+..
T Consensus 75 g~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred chhhhhcchhHHHHHHHhcc
Confidence 99999999999999987743
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=9.6e-05 Score=65.41 Aligned_cols=73 Identities=29% Similarity=0.493 Sum_probs=61.8
Q ss_pred eeEEEccCCccCCHHH----H--HHHHhhcCCeeeEEEEEeCCc-------c--eEEEEeCCHHHHHHHHHHhcCCCccc
Q 014955 263 TTVYVGNLAPEVTQLD----L--HRHFHSLGAGVIEEVRVQRDK-------G--FGFVRYSTHAEAALAIQMGNTTQSSY 327 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~----L--~~~F~~~G~~~i~~i~~~~~~-------g--~afV~f~~~~~A~~A~~~l~g~~~~~ 327 (415)
+-+||.+|++.+-.|+ | .++|.+|| .|..|.+.+.. + -.||+|.+.++|.+++...+|. .
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyG--kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs---~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYG--KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS---L 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhcc--ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc---c
Confidence 4589999999886665 3 37899999 89999998752 3 2499999999999999999999 9
Q ss_pred cCCeeeEEeeCCC
Q 014955 328 LFGKQMKCSWGSK 340 (415)
Q Consensus 328 ~~g~~l~v~~a~~ 340 (415)
++||.|+..|+..
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999998753
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.58 E-value=6.2e-05 Score=67.58 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCce--------EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
.....++||-+||.++++.+|.++|..+|.|. .|.+-+|++|++.|+-|.|.|.+...|..|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456899999999999999999999998774 3667788899999999999999999999999999999999
Q ss_pred CeeEEEEEccCCC
Q 014955 210 SRQIRCNWATKGA 222 (415)
Q Consensus 210 g~~l~v~~a~~~~ 222 (415)
+.+|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876655
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00035 Score=61.93 Aligned_cols=79 Identities=18% Similarity=0.384 Sum_probs=61.7
Q ss_pred ceEEEcCCCcccCHHHH------HHHhcCCCCceEEEEeecCCC-CCcceE--EEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 142 FNIFVGDLSPEVTDATL------FACFSVYPSCSDARVMWDQKT-GRSRGF--GFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~-~~~~g~--afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
+-+||-+||+.+..+++ .++|..||.|..|.+-+...+ +...+. .||.|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 46899999998776662 378999999998877543211 111222 499999999999999999999999999
Q ss_pred EEEEEccC
Q 014955 213 IRCNWATK 220 (415)
Q Consensus 213 l~v~~a~~ 220 (415)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99998654
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.55 E-value=0.00018 Score=47.04 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHH
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~ 111 (415)
+.|-|.|.+++.. ++|..+|..||.|..+.+- ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 5688999998775 4556688899999987775 33358999999999999985
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.48 E-value=9.7e-05 Score=67.63 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=56.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----------C-------CceEEEEEecHHHHHHHHHHhCC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----------K-------SSYGFIHYFDRRSAAMAILSLNG 116 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----------~-------~g~afV~f~~~~~A~~a~~~l~~ 116 (415)
-++++|.+.|||.+-..+.|.++|..+|.|.+|+|++.. + +-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 378999999999999999999999999999999998871 1 24899999999999999988755
Q ss_pred cc
Q 014955 117 RH 118 (415)
Q Consensus 117 ~~ 118 (415)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 164
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.43 E-value=0.00015 Score=69.11 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 254 ~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
..+......+.|+|.||-..+|.-.|+.++..-| +.|++.-|.+=+..|||.|.+.++|.....+|||..|..-+.+.|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3445667788999999999999999999999665 377777444448899999999999999999999997767788999
Q ss_pred EEeeCCC
Q 014955 334 KCSWGSK 340 (415)
Q Consensus 334 ~v~~a~~ 340 (415)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999763
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.41 E-value=0.00041 Score=60.38 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCCCceEEEEeecCCCCCcc-eEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 155 DATLFACFSVYPSCSDARVMWDQKTGRSR-GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
++++.+.+++||.|..|.|+.++...... --.||+|...++|.+|+-.|||.+|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56889999999999999888765433322 238999999999999999999999999999987753
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00023 Score=65.23 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-------------------cceEEEEeCCHHHHHHHHHH
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------------------KGFGFVRYSTHAEAALAIQM 319 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-------------------~g~afV~f~~~~~A~~A~~~ 319 (415)
.-+.++|.+.|||.+-.-+-|.++|+.+| .|..|+|... +-||+|+|...+.|.+|.+.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568999999999999999999999999 9999999864 46899999999999999998
Q ss_pred hcCC
Q 014955 320 GNTT 323 (415)
Q Consensus 320 l~g~ 323 (415)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8654
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.30 E-value=0.00014 Score=62.22 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=60.5
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCC--------CCcc----eEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT--------GRSR----GFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~~----g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
.-.||+++||+..+...|+++|+.||.|-+|.+.....+ |.++ .-++|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999988755433 2222 2378999999999999999999999
Q ss_pred CCee
Q 014955 209 GSRQ 212 (415)
Q Consensus 209 ~g~~ 212 (415)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8864
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00064 Score=58.26 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccC
Q 014955 195 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274 (415)
Q Consensus 195 ~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 274 (415)
-|..|...|++....++.++|.|+.. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 46677778999999999999999876 359999999999
Q ss_pred CHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhc
Q 014955 275 TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 275 ~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~ 321 (415)
+.+.|.+.|+.|| .|....+.-| .+-++|.|...-.|.+|+..++
T Consensus 44 sndll~~~f~~fg--~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 44 SNDLLEQAFRRFG--PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhHHHHHhhhhcC--ccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 9999999999999 5555444322 5789999999999999998774
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.24 E-value=0.00071 Score=58.97 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCcceEEEeecCC-----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 70 EPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 70 ~~~l~~~f~~~G~v~~v~~~~~~~-----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
++++.+-+.+||.|.+|.|+...+ ..--||+|...++|.+|+-.|||..|+|+.++..|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999998887653 2357999999999999999999999999999998764
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.0012 Score=49.20 Aligned_cols=72 Identities=21% Similarity=0.104 Sum_probs=50.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEe-----------ecCCCceEEEEEecHHHHHHHHHHhCCccccCCce
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI-----------RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~-----------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 124 (415)
.+.|.|-+.|+. ....|.+.|++||.|.+..-. ......+-.|+|.++.+|.+||. .||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 355999999998 567888999999998876511 11233599999999999999995 69999988644
Q ss_pred -eeecc
Q 014955 125 -KVNWA 129 (415)
Q Consensus 125 -~v~~~ 129 (415)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 35554
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.19 E-value=0.0018 Score=48.32 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=51.9
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEE-------------EeCCcceEEEEeCCHHHHHHHHHHhcCCCccccC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-------------VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~-------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (415)
+-|.|-+.|.. ....|.+.|++|| .|.+.. ......+..|+|.+..+|.+|+.+ ||. .+.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~---i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT---IFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE---EET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe---EEc
Confidence 45888899988 5667889999999 777775 555678999999999999999984 888 888
Q ss_pred Cee-eEEeeCC
Q 014955 330 GKQ-MKCSWGS 339 (415)
Q Consensus 330 g~~-l~v~~a~ 339 (415)
|.. +-|.|.+
T Consensus 80 g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 GSLMVGVKPCD 90 (100)
T ss_dssp TCEEEEEEE-H
T ss_pred CcEEEEEEEcH
Confidence 754 4477653
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.19 E-value=0.00022 Score=61.03 Aligned_cols=67 Identities=28% Similarity=0.378 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCC----------------ceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----------------SYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----------------g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
-.||+++||+.+.-.-|+++|+.||.|-.|-+-+.... .-++|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 35999999999999999999999999999888664321 24679999999999999999999999
Q ss_pred CCc
Q 014955 121 GQP 123 (415)
Q Consensus 121 g~~ 123 (415)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 976
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0019 Score=61.45 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCcceEEEcCCCcc--cCHH----HHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-Ce
Q 014955 139 SGHFNIFVGDLSPE--VTDA----TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SR 211 (415)
Q Consensus 139 ~~~~~l~v~nlp~~--~~~~----~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~ 211 (415)
.-...|+|.|+|-- ...+ -|..+|+++|++....++.+..+ ..+||.|++|.+..+|..|++.|||+.++ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 33468999999863 2222 45578999999999999988654 59999999999999999999999999884 66
Q ss_pred eEEEE
Q 014955 212 QIRCN 216 (415)
Q Consensus 212 ~l~v~ 216 (415)
+..|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 66665
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.11 E-value=0.00031 Score=60.27 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHHHHh-ccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 71 PLLQEVFS-STGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 71 ~~l~~~f~-~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+||...|+ +||.|+++++..+. ..|-+||.|...++|++|+..||+..|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33444444 89999999776654 3588999999999999999999999999999998865
No 175
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.09 E-value=0.0024 Score=59.51 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=63.7
Q ss_pred cceeEEEccCCccC-CHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 261 QYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 261 ~~~~l~v~nlp~~~-~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..+.|-+.-+|+.. +-++|...|.+|| .|..|.+.-+.-.|.|+|.+..+|-+|.. .++. .|++|.|+|.|-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~a---vlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGA---VLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcC--ccccccccCchhhheeeeeccccccchhc-cccc---eecCceeEEEEec
Confidence 34567777777766 6688999999999 99999988777789999999999988865 5777 8999999999988
Q ss_pred CCC
Q 014955 340 KPT 342 (415)
Q Consensus 340 ~~~ 342 (415)
...
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 754
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.07 E-value=0.0006 Score=60.79 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=66.3
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCC--CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...++||+||-+-+|++||.+.+...| .+.+++++.++.+|.+||||+|...+....++.++.|-.+.+.|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 346899999999999999999887765 56778888888899999999999999999999999998888887655443
No 177
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.98 E-value=0.0017 Score=58.56 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcce--------EEEeecC----CCceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
.+...+|||-+||..+++++|.++|..+|.|.. |++.+++ .++-|.|.|.+...|+.|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999987754 3444443 3589999999999999999999999999
Q ss_pred CCceeeecccccC
Q 014955 121 GQPIKVNWAYASG 133 (415)
Q Consensus 121 g~~l~v~~~~~~~ 133 (415)
|..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998775544
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.87 E-value=0.0044 Score=43.73 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 116 (415)
||--.+|..+...||.++|++||.| .|..+.+. -|||...+.+.|..++..++.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 5444499999999999999999998 55666665 599999999999999987754
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.82 E-value=0.00073 Score=58.06 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=49.9
Q ss_pred HHHHHHHh-hcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 277 LDLHRHFH-SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 277 ~~L~~~F~-~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
+||...|+ +|| +|+.+.+-.+ +|-+||.|...++|.+|++.||+. ++.|++|...+..
T Consensus 83 Ed~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR---w~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR---WYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc---cccCCcceeeecC
Confidence 45555555 999 8999877765 689999999999999999999999 9999999998864
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.79 E-value=0.0081 Score=40.21 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=44.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc----CCcceEEEeecCCCceEEEEEecHHHHHHHHHHh
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l 114 (415)
.|+|+|+. +++.+||+.+|..| + ...|..+.|.+ |=|.|.+.+.|.+|+..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 59999985 48899999999999 5 45788888875 899999999999999754
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.78 E-value=0.0086 Score=47.50 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=52.9
Q ss_pred CCCcceeEEEccCC-----c-cCCH---HHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014955 258 NNPQYTTVYVGNLA-----P-EVTQ---LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (415)
Q Consensus 258 ~~~~~~~l~v~nlp-----~-~~~~---~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (415)
.+|+.-|+.|.-.. . ...+ .+|.+.|..|| ++.-+|+..+ .-.|+|.+-+.|.+|+. ++|. .+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~G--evvLvRfv~~--~mwVTF~dg~sALaals-~dg~---~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYG--EVVLVRFVGD--TMWVTFRDGQSALAALS-LDGI---QV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS---ECEEEEETT--CEEEEESSCHHHHHHHH-GCCS---EE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCC--ceEEEEEeCC--eEEEEECccHHHHHHHc-cCCc---EE
Confidence 44555677776555 1 2232 26777888999 8888888864 88899999999999987 7999 99
Q ss_pred CCeeeEEeeCC
Q 014955 329 FGKQMKCSWGS 339 (415)
Q Consensus 329 ~g~~l~v~~a~ 339 (415)
+|+.|+|+...
T Consensus 95 ~g~~l~i~LKt 105 (146)
T PF08952_consen 95 NGRTLKIRLKT 105 (146)
T ss_dssp TTEEEEEEE--
T ss_pred CCEEEEEEeCC
Confidence 99999998654
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.48 E-value=0.017 Score=45.81 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=45.9
Q ss_pred HHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014955 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 157 ~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
+|.+.|..||.+.-+++.-+ .-+|+|.+-+.|-+|+. ++|..++|+.|+|+...+.-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 78888999999988888744 38999999999999997 899999999999998766433
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.40 E-value=0.0057 Score=54.75 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=59.0
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
..++||+||-+.+|++||.+.+...|-..+.++++..+ ||||+|...+.....+.++.|-.+ .+.|..-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k---~iHGQ~P~ 155 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK---TIHGQSPT 155 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc---eecCCCCe
Confidence 36899999999999999999999998556777777654 899999999999999999988888 78875433
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.39 E-value=0.0055 Score=58.82 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=61.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhc-cCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc---CCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 127 (415)
....+..|+|.||-...|.-.|+.++.+ .|.|++..| |+-+..|||.|.+.++|...+..|||..+. ++.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3445677999999999999999999995 556777633 555568999999999999999999997663 4667776
Q ss_pred ccc
Q 014955 128 WAY 130 (415)
Q Consensus 128 ~~~ 130 (415)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 653
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.33 E-value=0.028 Score=37.64 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=43.2
Q ss_pred eeEEEccCCccCCHHHHHHHHhhc-CCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHh
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~-G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l 320 (415)
..|+|.++. +++.+||+.+|..| .......|....+ ..|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 569999985 58888999999999 1112566777766 45568899999999999764
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.17 E-value=0.015 Score=55.43 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=56.8
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
+.+.++.||..+-.|+++.+|..-.+..+.+|.+.-+. -.||+|.+..||..|.+.|... +..|.|++|.-
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylree-vk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREE-VKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHH-HHhhcCcchhh
Confidence 56788999999999999999997555588899888764 4599999999999999877543 22677777643
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.11 E-value=0.027 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=39.9
Q ss_pred eEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhc
Q 014955 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 264 ~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~ 321 (415)
.+|--..|......||.++|+.||. ..|....+ ..|||...+.+.+..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~---I~VsWi~d-TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQ---IYVSWIND-TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCC---EEEEEECT-TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCc---EEEEEEcC-CcEEEEeecHHHHHHHHHHhc
Confidence 3544459999999999999999993 34555544 689999999999999998775
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.11 E-value=0.03 Score=43.77 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=55.5
Q ss_pred CCCcceEEEcCCCCCCC-HHH---HHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVT-EPL---LQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t-~~~---l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+..||.|+=|...+. .+| |...++.||+|.+|...-.. -|.|.|.|..+|-+|+.++.. ...|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 44567899988877653 344 44556789999998775544 599999999999999998866 56677777776
Q ss_pred c
Q 014955 129 A 129 (415)
Q Consensus 129 ~ 129 (415)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 189
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.013 Score=56.01 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=56.7
Q ss_pred eeEEEccCCccC------CHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccC-C
Q 014955 263 TTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-G 330 (415)
Q Consensus 263 ~~l~v~nlp~~~------~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g 330 (415)
.+|+|.|+|--- -..-|..+|+++| .+....++.+ +|+.|++|++..+|..|++.|||+ .++ +
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g--k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~---~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAG--KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK---RLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhc--cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc---eeccc
Confidence 679999998632 2345678899999 8888888854 799999999999999999999999 665 5
Q ss_pred eeeEEee
Q 014955 331 KQMKCSW 337 (415)
Q Consensus 331 ~~l~v~~ 337 (415)
++..|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6677753
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.57 E-value=0.035 Score=46.65 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=48.6
Q ss_pred CHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhc--CCCccccCCeeeEEeeCCC
Q 014955 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 275 ~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g~~l~v~~a~~ 340 (415)
..+.|+++|..|+ .+....++++=+-..|.|.+.+.|.+|...|+ +. .+.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~--~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~---~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYD--PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT---SFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS---EETTEE-EEE----
T ss_pred hHHHHHHHHHhcC--CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc---ccCCCceEEEEccc
Confidence 4578999999998 88899999988888999999999999999999 88 89999999999854
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.44 E-value=0.014 Score=48.82 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc-cCCcceEEEee---cC------CCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIR---KD------KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v~~v~~~~---~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
....|.|+.||+.+||+++.+.++. ++.......+. +. ...-|||.|.+.+++......++|..|...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4567999999999999999998877 55542222222 11 125799999999999999999999887643
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.04 E-value=0.16 Score=39.91 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=57.6
Q ss_pred CCcceeEEEccCCccC-CHHHHH---HHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 259 NPQYTTVYVGNLAPEV-TQLDLH---RHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~-~~~~L~---~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
.++-.+|.|.=|..++ ..+||+ ..++.|| .|.+|... ++-.|.|.|.|..+|=.|+.+++.. ..|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--pI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~----~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--PIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR----APGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC--Ccceeeec-CCceEEEEehhhHHHHHHHHhhcCC----CCCceEE
Confidence 4555788887776665 334454 4567899 88888765 4678999999999999999998875 8889999
Q ss_pred EeeCC
Q 014955 335 CSWGS 339 (415)
Q Consensus 335 v~~a~ 339 (415)
|+|--
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99854
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.97 E-value=0.28 Score=37.40 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=46.7
Q ss_pred eEEEcCCCcccCHHHHHHHhcCC-CCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 143 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
.+.+...|.-++.++|..+.+.+ ..|..+++++|.. .++-.++++|.+.++|.+....+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33344444445556666665665 4677888887732 35657899999999999999999999875
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.50 E-value=0.57 Score=35.75 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=52.4
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
..+.+...|+.++.++|..+.+.+- ..|..+++.++ +-.+.++|.+.++|..-...+||++.-.+....-+|-|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 4455566666777777876666664 47888899887 34789999999999999999999933223334444444
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.30 E-value=2.8 Score=37.37 Aligned_cols=178 Identities=10% Similarity=0.130 Sum_probs=100.0
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecC-------CCCCcceEEEEEEcCHHHHHHHH----HHhC
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-------KTGRSRGFGFVSFRNQQDAQSAI----NDLT 204 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~----~~l~ 204 (415)
.+.-.++.|.+.|+..+++--.+...|.+||+|++|.++.+. ...+......+-|-+.+.+-.-. +.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344556788899999999999999999999999999998664 01123346788898888765543 2232
Q ss_pred C--ceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHH-HHH
Q 014955 205 G--KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD-LHR 281 (415)
Q Consensus 205 ~--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~-L~~ 281 (415)
. ..+....|.+.|..-+-............-.... ...-.........++.|.|. +...+.+++ +.+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~---------~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~ 159 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYL---------VASLQYNIINRGATRSLAIE-FKDPVDKDDLIEK 159 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHH---------hhhhhheeecCCcceEEEEE-ecCccchhHHHHH
Confidence 2 2355666777665432211111100000000000 00000011111223566664 334443433 333
Q ss_pred HH---hhcC--CeeeEEEEEeCC--------cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 282 HF---HSLG--AGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 282 ~F---~~~G--~~~i~~i~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
.+ ..-+ .-.+++|.+..- +.||.++|-+...|...+..+...
T Consensus 160 kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 160 KLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred hhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 22 1111 015777777642 689999999999999999887643
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.28 E-value=0.15 Score=49.07 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHhCCccccCCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcC--CCCceEEEEeecCCCCCcceE
Q 014955 108 AMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV--YPSCSDARVMWDQKTGRSRGF 185 (415)
Q Consensus 108 ~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~ 185 (415)
.+++++.-+..+..+-.+|+.. ...+.|.+..||.+.-+++++.+|+. +-.+.++.+-.+. +
T Consensus 151 ~Evlresp~VqvDekgekVrp~---------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--n----- 214 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRPN---------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--N----- 214 (684)
T ss_pred HHHHhcCCCceeccCccccccC---------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--c-----
Confidence 3444444444555555555432 33467889999999999999999965 6788888776542 2
Q ss_pred EEEEEcCHHHHHHHHHHhCC--ceeCCeeEEE
Q 014955 186 GFVSFRNQQDAQSAINDLTG--KWLGSRQIRC 215 (415)
Q Consensus 186 afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 215 (415)
=||+|++..||..|.+.|.. +.|-|++|..
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 79999999999999887743 3455655543
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.10 E-value=0.023 Score=51.19 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=59.8
Q ss_pred ceEEEcCCCcccCHHHHH---HHhcCCCCceEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 142 FNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
+-+||-+|+.....+++. +.|..||.|..|.+.++.. .+.+ .-++|.|..+++|..||...+|....|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 357788888776555444 5688889999998887652 1111 2389999999999999999999999999988
Q ss_pred EEEccCC
Q 014955 215 CNWATKG 221 (415)
Q Consensus 215 v~~a~~~ 221 (415)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776543
No 198
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.07 E-value=0.043 Score=53.74 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=60.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+.-+|||+||...+..+-++.+....|.|.+++... |+|..|....-...|+..++...+.|+.+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 446799999999999999999999999988876655 899999999999999999998889888877764
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.93 E-value=0.034 Score=52.14 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred CcceEEEcCCCCCC-CHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 55 TCRSVYVGNIHTQV-TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 55 ~~~~v~v~nlp~~~-t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
..+.|-+.-+|... +-++|...|..||.|..|.+-... -.|.|+|.+..+|.+|. ...+..|.++.|+|.|..+..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 45667777777775 568899999999999999886653 36999999999998886 468999999999999987654
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.026 Score=50.85 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=60.8
Q ss_pred eeEEEccCCccCCHHHHH---HHHhhcCCeeeEEEEEeCCc---------ceEEEEeCCHHHHHHHHHHhcCCCccccCC
Q 014955 263 TTVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~---~~F~~~G~~~i~~i~~~~~~---------g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (415)
+-+||.+|+..+-++++. +.|.+|| .|..|.+.++. ..++|+|...++|.+|+...+|. .++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg--ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~---~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG--KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF---VDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc--cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH---Hhhh
Confidence 347888899887666554 4788888 88888887742 34899999999999999999999 9999
Q ss_pred eeeEEeeCCCCC
Q 014955 331 KQMKCSWGSKPT 342 (415)
Q Consensus 331 ~~l~v~~a~~~~ 342 (415)
+.|+..++..+.
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 999888876543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.80 E-value=0.044 Score=55.07 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=63.7
Q ss_pred EEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
..+.|.+-+.+..-|..+|..|| .+.+...+|+-..|.|+|.+.+.|..|+.+++|++. ..-|-+.+|.|++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkev-s~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDLNMALVSFSSVESAILALDALQGKEV-SVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhc--chhhheecccccchhhhhHHHHHHHHhhhhhcCCcc-cccCCceeEEecccc
Confidence 34455566778889999999999 999999999999999999999999999999999965 456778999998853
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.71 E-value=0.11 Score=43.44 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=50.8
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcC-CCCc---eEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCceeC---C
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSV-YPSC---SDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLG---S 210 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g 210 (415)
....|.|++||+++|++++.+.++. ++.. ..+.-...... .....-|||.|.+.++...-...++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999998877 5554 23331122111 112345999999999999999999998772 2
Q ss_pred --eeEEEEEccC
Q 014955 211 --RQIRCNWATK 220 (415)
Q Consensus 211 --~~l~v~~a~~ 220 (415)
..-.|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455676654
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.48 E-value=0.29 Score=45.97 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccC-CcceEEEeecCC--CceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
+.+++.|.|-.+|..++-.||..|+..+- .|..++++++.. +-..++.|.+.++|......+||+.|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33478899999999999999999998765 588999999763 4577899999999999999999998863
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.43 E-value=0.26 Score=41.48 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=46.2
Q ss_pred CHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeeEEEEEccCC
Q 014955 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIRCNWATKG 221 (415)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~~ 221 (415)
....|+++|..|+.+..+.+++.. +-..|.|.+.++|.+|...|+ +..+.|..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999988887442 248999999999999999999 89999999999998443
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.38 E-value=3 Score=37.22 Aligned_cols=156 Identities=14% Similarity=0.216 Sum_probs=98.1
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-----------CCceEEEEEecHHHHHHH----HH
Q 014955 48 PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----------KSSYGFIHYFDRRSAAMA----IL 112 (415)
Q Consensus 48 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----------~~g~afV~f~~~~~A~~a----~~ 112 (415)
|.+.+.=..|+|...|+..+++--.+..-|-+||+|++|.++.+. ......+.|-+.+.+... ++
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 333344456789999999999999999999999999999999866 124778999999877543 22
Q ss_pred HhCC--ccccCCceeeecccccCCC-----------------------CCCCCcceEEEcCCCcccCHHHHH-H---Hhc
Q 014955 113 SLNG--RHLFGQPIKVNWAYASGQR-----------------------EDTSGHFNIFVGDLSPEVTDATLF-A---CFS 163 (415)
Q Consensus 113 ~l~~--~~~~g~~l~v~~~~~~~~~-----------------------~~~~~~~~l~v~nlp~~~~~~~l~-~---~f~ 163 (415)
.|.. ..+....|.+.+..-+-.. .....++.|.|.- ...+..+++. + ++.
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~ 165 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLK 165 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhc
Confidence 2222 2345667777765421100 1123445666632 2334333332 2 222
Q ss_pred CCCC----ceEEEEeecCC--CCCcceEEEEEEcCHHHHHHHHHHhC
Q 014955 164 VYPS----CSDARVMWDQK--TGRSRGFGFVSFRNQQDAQSAINDLT 204 (415)
Q Consensus 164 ~~g~----v~~~~~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (415)
.-+. +++|.++.... ..-++.||.+.|-+..-|.+.+..+.
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2232 45666653222 23367799999999999999888775
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=0.48 Score=42.09 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=50.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCc-eeeec
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-IKVNW 128 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~ 128 (415)
|-|-++|+.. -..|..+|++||.|++...- .+..|-+|.|.+..+|.+||. .||..|.|.. |-|..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 7778888764 35678899999999876554 444699999999999999996 5888887743 44443
No 207
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.94 E-value=0.17 Score=41.39 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=60.1
Q ss_pred eeEEEccCCccCCH-----HHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCe-eeEEe
Q 014955 263 TTVYVGNLAPEVTQ-----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK-QMKCS 336 (415)
Q Consensus 263 ~~l~v~nlp~~~~~-----~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~-~l~v~ 336 (415)
.++++.+++..+.. .+...+|..|- +..-..++++.+..-|.|.+.+.|..|...+++. .|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~---~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLRSFRRVRINFSNPEAAADARIKLHST---SFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHHhhceeEEeccChhHHHHHHHHhhhc---ccCCCceEEEE
Confidence 45888888876633 34556777775 5666667777788889999999999999999999 89998 88888
Q ss_pred eCCCCCCCC
Q 014955 337 WGSKPTPPG 345 (415)
Q Consensus 337 ~a~~~~~~~ 345 (415)
|+.......
T Consensus 86 faQ~~~~~~ 94 (193)
T KOG4019|consen 86 FAQPGHPES 94 (193)
T ss_pred EccCCCccc
Confidence 877655444
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.67 E-value=0.7 Score=31.53 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=45.1
Q ss_pred ccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 272 PEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 272 ~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
..++-++++..+.+|+ -.+|...+ .|+ ||.|.+.++|.++....+|. .+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~-tGf-YIvF~~~~Ea~rC~~~~~~~---~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDR-TGF-YIVFNDSKEAERCFRAEDGT---LFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecC-CEE-EEEECChHHHHHHHHhcCCC---EEEEEEEEe
Confidence 3678899999999996 56666443 244 89999999999999999999 788777654
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.83 Score=44.39 Aligned_cols=131 Identities=11% Similarity=0.158 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhcc----CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
....++|-|.|+.++ +...||.-+|+.| |.|.+|.|.+.. | ....|....+.|.++.+-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe---F-------------GkeRM~eEeV~GP~~el~ 234 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE---F-------------GKERMKEEEVHGPPKELF 234 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh---h-------------hHHHhhhhcccCChhhhc
Confidence 445678999999997 7889999988865 478899887653 1 112333344455544442
Q ss_pred cccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
-......... ......++-.+.-+..|+ +..++. =||.|+|.+.+.|......++|..
T Consensus 235 ~~~e~~~~s~-----------sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 235 KPVEEYKESE-----------SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred cccccCcccc-----------cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecCchHHHHHHHhcCcce
Confidence 1111111000 011111112233334442 111111 179999999999999999999999
Q ss_pred eC--CeeEEEEEccCC
Q 014955 208 LG--SRQIRCNWATKG 221 (415)
Q Consensus 208 ~~--g~~l~v~~a~~~ 221 (415)
+. +..+.++|....
T Consensus 293 fEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 293 FESSANKLDLRFIPDD 308 (650)
T ss_pred eccccceeeeeecCCC
Confidence 85 566677776443
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.47 E-value=0.68 Score=31.59 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=42.7
Q ss_pred ccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 152 EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 152 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
.++-++++..+..|+- . +|..| .+| -||.|.+..+|++|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999843 2 33334 344 789999999999999999999887776654
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.82 E-value=0.54 Score=44.24 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=57.3
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (415)
.+.|+|-.+|..++-.||..++..+- ..|.++++.|+ +-.++|.|.+.++|..-.+.+||+ .|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~-~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk---~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI-KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGK---QFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh-hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCC---cCCC
Confidence 57899999999999999999999884 48999999987 446899999999999999999999 6654
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.79 E-value=0.38 Score=42.74 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCee-eEEee
Q 014955 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSW 337 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-l~v~~ 337 (415)
|-|.++|+.-. .-|..+|++|| .|.+....++-.+.+|.|.++.+|.+|+.+ ||+ .|+|.. |-|.-
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG--~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~---ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCG--EVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGT---IIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhC--eeeeeecCCCCceEEEEecchhHHHHhhhh-cCe---eeccceEEeeee
Confidence 45566766543 45778999999 899888887778999999999999999985 787 777754 34544
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.82 E-value=0.16 Score=51.26 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=58.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc--CCceeeecccc
Q 014955 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYA 131 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~ 131 (415)
.++.|.+-..+..-|..+|+.||.|.+.+..++-+ .|.|+|.+.+.|..|+..+.|+.+. |-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44455555667788999999999999999988875 7999999999999999999998754 77778877654
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.72 E-value=1 Score=31.61 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHHhhcC---CeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 272 PEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 272 ~~~~~~~L~~~F~~~G---~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
..++..+|..++...+ ...|-.|.+..+ |+||+-. .+.|..+++.|++. .+.|++++|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~-~~~a~~v~~~l~~~---~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVP-EEVAEKVLEALNGK---KIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE--TT-HHHHHHHHTT-----SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEEC-HHHHHHHHHHhcCC---CCCCeeEEEEEC
Confidence 4678889988887664 345667777764 8888874 45888999999999 999999999753
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.68 E-value=0.23 Score=48.96 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 255 APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 255 ~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
.....++..++||+|+-+.+..+-++.+...+| .|..+.... |+|+.|.......+|+..++-. .++|..+.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g--~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~---~~~~~kl~ 104 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSG--FVPSWKRDK---FGFCEFLKHIGDLRASRLLTEL---NIDDQKLI 104 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCC--cchhhhhhh---hcccchhhHHHHHHHHHHhccc---CCCcchhh
Confidence 334456668999999999999999999999999 555555443 9999999999999999999988 89888877
Q ss_pred Eee
Q 014955 335 CSW 337 (415)
Q Consensus 335 v~~ 337 (415)
+.-
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.24 E-value=0.46 Score=34.45 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.3
Q ss_pred EEEEEcCHHHHHHHHHHh-CCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCccee
Q 014955 186 GFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (415)
Q Consensus 186 afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (415)
|+|+|.++.-|...++.- +...++++.+.|.-+.-.......- ........++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCCE
Confidence 679999999999988732 1234567777665442211110000 0012223478
Q ss_pred EEEccCCccCCHHHHHHHHh
Q 014955 265 VYVGNLAPEVTQLDLHRHFH 284 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~ 284 (415)
|.|.|||...++++|++.++
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999987644
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.92 E-value=0.56 Score=34.04 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=43.0
Q ss_pred EEEEEecHHHHHHHHHHhCC-ccccCCceeeecccccCC------CCCCCCcceEEEcCCCcccCHHHHHHHh
Q 014955 97 GFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAYASGQ------REDTSGHFNIFVGDLSPEVTDATLFACF 162 (415)
Q Consensus 97 afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~~~~~------~~~~~~~~~l~v~nlp~~~~~~~l~~~f 162 (415)
|+|.|.++.-|++.++.-.- ..+.+..+.|....-... -....+.++|.|.|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999998864211 123444555543221111 1234556789999999999999988654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.54 E-value=1.5 Score=30.72 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhccCCcc-----eEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 67 QVTEPLLQEVFSSTGPVE-----GCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 67 ~~t~~~l~~~f~~~G~v~-----~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.++..+|..++...+.|. +|.+.. .|+||+-... .|..++..|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888888765444 344433 3899988776 578999999999999999998753
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.49 E-value=3.9 Score=36.17 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=43.0
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHH
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAE 312 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~ 312 (415)
.....|+++||+.++.-.||+..+.+.|+ ...++..--..|-||+.|.+...
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCC-CceeEeeecCCcceeEecCCccC
Confidence 33466999999999999999999999985 45667777778999999987643
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.95 E-value=2 Score=37.85 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=41.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHH
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRS 106 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~ 106 (415)
.-...|+++||+.++.-.||+..+.+.|.+ -..+......|-||+.|.+...
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCccC
Confidence 334569999999999999999999988764 3455666667889999987643
No 221
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=83.08 E-value=1.6 Score=46.12 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=9.7
Q ss_pred EEccCCccCCHHHHHHHHhhcC
Q 014955 266 YVGNLAPEVTQLDLHRHFHSLG 287 (415)
Q Consensus 266 ~v~nlp~~~~~~~L~~~F~~~G 287 (415)
-++|.....+-..-...+..||
T Consensus 2066 ~~~n~~s~~n~s~~qq~~~~~~ 2087 (2131)
T KOG4369|consen 2066 SLGNASSTTNPSRTQQMYQQYG 2087 (2131)
T ss_pred hhcccCCCCCccHHHHHHHHhc
Confidence 3445444333333344455554
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.47 E-value=0.9 Score=39.81 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=48.9
Q ss_pred eeEEEccCCcc------------CCHHHHHHHHhhcCCeeeEEEEEeC--C--------------cce---------EEE
Q 014955 263 TTVYVGNLAPE------------VTQLDLHRHFHSLGAGVIEEVRVQR--D--------------KGF---------GFV 305 (415)
Q Consensus 263 ~~l~v~nlp~~------------~~~~~L~~~F~~~G~~~i~~i~~~~--~--------------~g~---------afV 305 (415)
.||++.+||-. -+++.|+..|..|| .|..|.|+- . +|| |||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg--~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFG--EIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhc--cceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 46777777743 35678999999999 666665542 1 233 346
Q ss_pred EeCCHHHHHHHHHHhcCCCccc-cCC----eeeEEeeCCCC
Q 014955 306 RYSTHAEAALAIQMGNTTQSSY-LFG----KQMKCSWGSKP 341 (415)
Q Consensus 306 ~f~~~~~A~~A~~~l~g~~~~~-~~g----~~l~v~~a~~~ 341 (415)
+|.....-..|+..|.|..++. .+| -.++|.|.++.
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 6766667777777777763211 122 35778876653
No 223
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.59 E-value=2.7 Score=34.18 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHhc-cCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCCCC---CCcc
Q 014955 67 QVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHF 142 (415)
Q Consensus 67 ~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~---~~~~ 142 (415)
..+-..|...+.. ++....+.+..= ..++..+.|.+.+++.+++. .....+.|..+.+..-.+.....+. ....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccch
Confidence 3556666665554 333333333332 23689999999999999985 3455677777777655433222211 1122
Q ss_pred eEEEcCCCcc-cCHHHHHHHhcCCCCceEEEEe
Q 014955 143 NIFVGDLSPE-VTDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 143 ~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~ 174 (415)
=|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 3667899997 7778888999999999887654
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=80.46 E-value=3.9 Score=30.83 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcc--ccCCceeeecccccCC-C-CCCC
Q 014955 64 IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAYASGQ-R-EDTS 139 (415)
Q Consensus 64 lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~~~~~-~-~~~~ 139 (415)
||+.+ +.|.++|+.-|.|.+|..+..-.. ..|+..++|.. +.|. |.|.-...... + ...+
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd-------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD-------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC-------------chhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 56655 568999999999998866554321 22333334421 2333 44432211110 0 0111
Q ss_pred -CcceEEEcCCCcccCHHHHHHHhcC---CCCceEEEEeecCCCCCcceEEEEEEcCH
Q 014955 140 -GHFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (415)
Q Consensus 140 -~~~~l~v~nlp~~~~~~~l~~~f~~---~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 193 (415)
.+..+ --|..+|-.+++++|+. |-.|.+-.+.+|---.-+-..||..|...
T Consensus 75 sgnnv~---F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNVI---FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCcee---cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11222 23678899999999986 55555555555532223455788888654
No 225
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.71 E-value=4.8 Score=37.52 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=6.3
Q ss_pred CHHHHHHHHhhcC
Q 014955 275 TQLDLHRHFHSLG 287 (415)
Q Consensus 275 ~~~~L~~~F~~~G 287 (415)
.+++|..-..+.+
T Consensus 459 ~~d~I~~s~rk~~ 471 (505)
T COG5624 459 VDDIIHMSYRKQK 471 (505)
T ss_pred hHHHHHHHHHhcC
Confidence 3445554444444
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.46 E-value=19 Score=35.46 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=61.8
Q ss_pred CCCCCcceeEEEccCCcc-CCHHHHHHHHhhcC--CeeeEEEEEeCC---------------------------------
Q 014955 256 PENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLG--AGVIEEVRVQRD--------------------------------- 299 (415)
Q Consensus 256 ~~~~~~~~~l~v~nlp~~-~~~~~L~~~F~~~G--~~~i~~i~~~~~--------------------------------- 299 (415)
+.....+++|-|.||.++ +..+||.-+|+.|= .+.|.+|.|..+
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344567789999999995 78899999998763 237888887532
Q ss_pred ------------------c--ceEEEEeCCHHHHHHHHHHhcCCCccccCCee--eEEeeC
Q 014955 300 ------------------K--GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKCSWG 338 (415)
Q Consensus 300 ------------------~--g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~--l~v~~a 338 (415)
. =||.|+|.+.+.|......+.|. .|...- |-++|.
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~---EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI---EFESSANKLDLRFI 305 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc---eeccccceeeeeec
Confidence 0 26999999999999999999999 888654 445554
No 227
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=63.88 E-value=2.3 Score=38.52 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=0.0
Q ss_pred HHHHHHHhccC
Q 014955 71 PLLQEVFSSTG 81 (415)
Q Consensus 71 ~~l~~~f~~~G 81 (415)
.||+++++..|
T Consensus 153 ~dlkdilseag 163 (423)
T PF02166_consen 153 ADLKDILSEAG 163 (423)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444443
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.84 E-value=11 Score=29.09 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=27.2
Q ss_pred eeEEEccCCccC---------CHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCH-HHHHHHH
Q 014955 263 TTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTH-AEAALAI 317 (415)
Q Consensus 263 ~~l~v~nlp~~~---------~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~-~~A~~A~ 317 (415)
.++.|.|++... +.++|++.|+.|....+.-+.-... +|+++|.|... .--..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 357788886543 5578999999997444443322222 68999999764 3333343
No 229
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=61.46 E-value=2.9 Score=44.91 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=3.6
Q ss_pred eEEEcCCCC
Q 014955 58 SVYVGNIHT 66 (415)
Q Consensus 58 ~v~v~nlp~ 66 (415)
++|--+.++
T Consensus 413 a~Y~~~a~~ 421 (1973)
T KOG4407|consen 413 ALYAVGAGP 421 (1973)
T ss_pred hhhhcccCC
Confidence 344433333
No 230
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=61.27 E-value=9.7 Score=32.70 Aligned_cols=7 Identities=29% Similarity=0.164 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 014955 3 HQRLKQQ 9 (415)
Q Consensus 3 ~q~~~qq 9 (415)
||||..+
T Consensus 10 HQqQL~~ 16 (230)
T PF06752_consen 10 HQQQLVL 16 (230)
T ss_pred HHHHHHH
Confidence 4444333
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.03 E-value=9.2 Score=30.96 Aligned_cols=83 Identities=13% Similarity=-0.017 Sum_probs=54.2
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcce
Q 014955 184 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263 (415)
Q Consensus 184 g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (415)
++..++|.+++++.+++. .....+.+..+.+..-.+........ ......
T Consensus 56 ~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~-----------------------------~~~~~v 105 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVK-----------------------------FEHIPV 105 (153)
T ss_pred CeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccc-----------------------------eeccch
Confidence 478999999999999886 35566777777765443221111000 000002
Q ss_pred eEEEccCCcc-CCHHHHHHHHhhcCCeeeEEEEEeC
Q 014955 264 TVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQR 298 (415)
Q Consensus 264 ~l~v~nlp~~-~~~~~L~~~F~~~G~~~i~~i~~~~ 298 (415)
=|.|.|||.. .+++-|+.+.+.+| .+.++....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG--~~i~vD~~t 139 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIG--EPIEVDENT 139 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcC--CeEEEEcCC
Confidence 2667899987 57788999999999 777776553
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.83 E-value=11 Score=29.11 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=28.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhccCCcceEEEeecCC--CceEEEEEecHHHHH
Q 014955 58 SVYVGNIHTQ---------VTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAA 108 (415)
Q Consensus 58 ~v~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~~~~~~~--~g~afV~f~~~~~A~ 108 (415)
++.|-|++.. .+.++|.+.|+.|.++ +++.+.++. +|++.|+|.+.-+--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHHH
Confidence 4667777543 3558899999999987 466666553 689999999876543
No 233
>PF14893 PNMA: PNMA
Probab=60.36 E-value=6.4 Score=36.52 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=35.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh----ccCCcc--eEEEeecCCCceEEEEEecHHH
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFS----STGPVE--GCKLIRKDKSSYGFIHYFDRRS 106 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~----~~G~v~--~v~~~~~~~~g~afV~f~~~~~ 106 (415)
+..|.|.|.+||.++++++|.+.+. +.|... .-.+.++.+..-|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 3567899999999999999888765 445432 1112223344578888876654
No 234
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.62 E-value=23 Score=33.22 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCC-cceEEEeecCCCceEEEEEecHHHHHHHHHH
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~ 113 (415)
+.|-|.++|.....+||...|+.|+. --+|+.+-+. .||-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 56899999999888999999999975 2345555554 799999999999999853
No 235
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=58.49 E-value=1.6e+02 Score=27.52 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=6.5
Q ss_pred HHHHHHHHhcc
Q 014955 70 EPLLQEVFSST 80 (415)
Q Consensus 70 ~~~l~~~f~~~ 80 (415)
+..|.+++..+
T Consensus 98 ~rt~~~~laeh 108 (475)
T KOG3982|consen 98 FRTVVEFLAEH 108 (475)
T ss_pred HHHHHHHHHhC
Confidence 34566666654
No 236
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.38 E-value=29 Score=32.54 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=45.1
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHH
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~ 319 (415)
-.+.|-|.++|.....+||...|+.|+. .=-+|.+.. .-.||-.|.+...|..|+-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 3467999999999999999999999972 223444443 46889999999999999864
No 237
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.05 E-value=13 Score=34.66 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-------CCceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-------KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-------~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
...|.|..||+..++.+|.+-..++-.-.....+... ..+.|||.|...++.......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3569999999999999999888876542222222211 1368899999999988888888887654
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.42 E-value=42 Score=24.20 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CcceEEEeecCC-CceEEEEEecHHHHHHHHHHh
Q 014955 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l 114 (415)
-|.-..+.+++..+|++.++. || .|.+|....... ..-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 566677889999999999987 66 477777666443 357999999999998876544
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.85 E-value=59 Score=28.89 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=42.8
Q ss_pred ceEEEcCCCccc------------CHHHHHHHhcCCCCceEEEEe-----ecCCCCCcce-----EE---------EEEE
Q 014955 142 FNIFVGDLSPEV------------TDATLFACFSVYPSCSDARVM-----WDQKTGRSRG-----FG---------FVSF 190 (415)
Q Consensus 142 ~~l~v~nlp~~~------------~~~~l~~~f~~~g~v~~~~~~-----~~~~~~~~~g-----~a---------fv~f 190 (415)
.+|++.+||-.| +++.|+..|+.||.|..|.|+ +...+|+..| |+ ||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 478888887543 467899999999999888764 2223444433 32 3444
Q ss_pred cCHHHHHHHHHHhCCcee
Q 014955 191 RNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 191 ~~~~~a~~a~~~l~~~~~ 208 (415)
.....-..|+..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 444455666777776554
No 240
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=53.99 E-value=17 Score=33.53 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=10.4
Q ss_pred eEEEEeecCCCCCcceE--EEEEEcCH
Q 014955 169 SDARVMWDQKTGRSRGF--GFVSFRNQ 193 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~g~--afv~f~~~ 193 (415)
.+++++-. +|+.|.| -++.|...
T Consensus 182 NDLRFVGR--SGRGKsFtLTIti~TnP 206 (475)
T KOG3982|consen 182 NDLRFVGR--SGRGKSFTLTITIFTNP 206 (475)
T ss_pred ccceeecc--cCCCcceEEEEEEecCC
Confidence 34455422 3444444 34555544
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.00 E-value=2.4 Score=41.15 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=52.2
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
.+++++.|++++++-.+|..+|+.+..+..+.+..+........+.+|.|+.--....|+.+||++.+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4678999999999999999999998766665543222222345578999998777777888888776643
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.85 E-value=62 Score=22.89 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=42.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CcceEEEeecCC-CceEEEEEecHHHHHHHHHHh
Q 014955 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l 114 (415)
-|+-.++.+++..+|++.++. || .|.+|....-+. ..-|||.+....+|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 677778899999999999987 56 466776655432 347999999999988876543
No 243
>PRK10927 essential cell division protein FtsN; Provisional
Probab=49.07 E-value=56 Score=29.90 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=40.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEE---EEecHHHHHHHHHHhCCccccC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFI---HYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV---~f~~~~~A~~a~~~l~~~~~~g 121 (415)
....|-||.+-....-+.|+.-+..-|--..|. .+. ++--| =|.+.++|++++..|.+.-+.|
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~--~~g--~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ 311 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TNN--GWNRVVIGPVKGKENADSTLNRLKMAGHTN 311 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc--cCC--cEEEEEeCCCCCHHHHHHHHHHHHHCCCCc
Confidence 345577888877777778888777777544441 111 22222 3779999999998887665533
No 244
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.56 E-value=30 Score=28.77 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-eEEEEEccCCCCCC
Q 014955 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIRCNWATKGAGNN 225 (415)
Q Consensus 157 ~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~a~~~~~~~ 225 (415)
....+|..|.+.....++ ++.+..-|.|.+.+.|..|.-.+++..+.|. .++.-++.+.....
T Consensus 31 ~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES 94 (193)
T ss_pred HHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc
Confidence 344556656555555555 3344577899999999999999999999887 88888877655444
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.35 E-value=54 Score=23.62 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.6
Q ss_pred EEEccCCccCCHHHHHHHHhh-cCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHh
Q 014955 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMG 320 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~-~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l 320 (415)
-|.-.++...+..+|+..++. || +.|.+|+...- ..-|||++..-..|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~-VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFD-VKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999997 55 68888877653 357999999988888775543
No 246
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.68 E-value=9.6 Score=37.72 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.4
Q ss_pred eEEEcCCC
Q 014955 58 SVYVGNIH 65 (415)
Q Consensus 58 ~v~v~nlp 65 (415)
.|++...|
T Consensus 235 vi~~pqmP 242 (728)
T KOG4592|consen 235 VIYLPQMP 242 (728)
T ss_pred ccccccCh
Confidence 35544433
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.53 E-value=70 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=42.2
Q ss_pred EEEccCCccCCHHHHHHHHhh-cCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHh
Q 014955 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMG 320 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~-~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l 320 (415)
-|+-.++.+.+..+|+..++. || +.|.+|+...- ..-|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~-VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFD-VKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 566668899999999999987 55 67888876643 356999999888887765543
No 248
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.62 E-value=44 Score=22.96 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHhcCCC-CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++|.+.|...| .|..+.-+..+.++..-..-||+.....+...+ ++=+.+++..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 45677777776 566776666655666677788888766553332 3445678888999876553
No 249
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.40 E-value=1e+02 Score=28.26 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHhc-------------cCCcceEEEeecCCCceEEEEEecHH
Q 014955 67 QVTEPLLQEVFSS-------------TGPVEGCKLIRKDKSSYGFIHYFDRR 105 (415)
Q Consensus 67 ~~t~~~l~~~f~~-------------~G~v~~v~~~~~~~~g~afV~f~~~~ 105 (415)
-+|..+|.+|=.. .|.++-|++....+..|-|-+|.+..
T Consensus 302 ~WtRpdI~~FK~~i~~d~~~gvItvGhGetVTVRVPThenGsclFWEFATD~ 353 (469)
T KOG3878|consen 302 IWTRPDIEQFKTEISADDGDGVITVGHGETVTVRVPTHENGSCLFWEFATDS 353 (469)
T ss_pred hcCcccHHHHHHHhccCCCCCeEEecCCceEEEeccccCCCceEEEEecccc
Confidence 3566677665433 34555566655555567888887653
No 250
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=44.05 E-value=6.5 Score=42.45 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.4
Q ss_pred EEEEcC
Q 014955 187 FVSFRN 192 (415)
Q Consensus 187 fv~f~~ 192 (415)
|+..++
T Consensus 634 t~sIk~ 639 (1973)
T KOG4407|consen 634 TSSIKT 639 (1973)
T ss_pred eeeeec
Confidence 344333
No 251
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.51 E-value=47 Score=30.81 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred EEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhc
Q 014955 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163 (415)
Q Consensus 97 afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 163 (415)
|||.|.+..+|..|++.+.... ++.+++..+.++. .+.=.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHH
Confidence 7999999999999998544332 3555666554332 344467766666666665543
No 252
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=40.27 E-value=29 Score=34.84 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=51.2
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
.+||+.+--..-+..-+..++..++.+...+++...+.+...+-++++|.....+..|.. |.++.+....+++
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 367776666666667777778888888888777666666666679999999988766654 6666665554443
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.41 E-value=54 Score=22.55 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHhcCCC-CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
.+|.+.|..+| .+..++-+..+.++.+-..-+|+.....+-.. .++=+.++|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677777777 56777777665555566667787765533222 24445678999999876543
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.94 E-value=8 Score=37.74 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=51.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
++|+|+|+++.++-.+|..+|+.+-.+..+-..... -..+.+|.|.-.-....|+..||+..+...
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 569999999999999999999988766665443322 124678999988888888888888766543
No 255
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.19 E-value=80 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCCceEEEEe
Q 014955 156 ATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 156 ~~l~~~f~~~g~v~~~~~~ 174 (415)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999776654
No 256
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.37 E-value=51 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=24.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 303 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 303 afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
|||+|++..+|..|.+.+... ..+.+++..|-+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-----~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-----RPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-----CCCCceEeeCCC
Confidence 799999999999999976654 335556665543
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=32.18 E-value=1.6e+02 Score=21.52 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhC
Q 014955 70 EPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (415)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (415)
.+.++++++..| .++++......-.....+++.|.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 366788888887 4888888777766688899999999888765443
No 258
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.69 E-value=37 Score=29.50 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.7
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
...+||+-|+|..++++-|+.+.+..| .+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg--~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLG--HVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhh--hhhheec
Confidence 346899999999999999999999998 4444433
No 259
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.68 E-value=1.9e+02 Score=20.30 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-------cCCcceEEEeec--CCCceEEEEEecHHHHHHHHHHhCCcc
Q 014955 59 VYVGNIHTQVTEPLLQEVFSS-------TGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRH 118 (415)
Q Consensus 59 v~v~nlp~~~t~~~l~~~f~~-------~G~v~~v~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~ 118 (415)
|..++||..+|.++|.....+ +..|.-++..-. ..+-||+.+=.|.+...++.+. .|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 456789988999998876654 433443333333 5567888888898888887654 3443
No 260
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.64 E-value=1.1e+02 Score=22.39 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=36.9
Q ss_pred cCCccCCHHHHHHHHhhcCCeeeEEEEEeCC--cceEEEEeCCHHHHHHHHHHhc
Q 014955 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 269 nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~--~g~afV~f~~~~~A~~A~~~l~ 321 (415)
.+-+.++...|..-|..-|- .-+-..+-+| +.+|.|.|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gk-k~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGK-KNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCc-ccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 45566777777777766651 2233344445 7899999999999999988765
No 261
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.12 E-value=2.2e+02 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCeeeEEEEEeCC--cceEEEEeCCHHHHHHHHHHhcC
Q 014955 276 QLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNT 322 (415)
Q Consensus 276 ~~~L~~~F~~~G~~~i~~i~~~~~--~g~afV~f~~~~~A~~A~~~l~g 322 (415)
.+.+++++++.| +.++++.+... -....+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 456888999998 58888888765 35677899999999888766554
No 262
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=29.46 E-value=46 Score=35.12 Aligned_cols=13 Identities=46% Similarity=0.429 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHHH
Q 014955 3 HQRLKQQQQQQQQ 15 (415)
Q Consensus 3 ~q~~~qqqqqqq~ 15 (415)
+-.++||++|+|+
T Consensus 1162 ~~~~mqq~~q~qa 1174 (1229)
T KOG2133|consen 1162 HMPLMQQAHQLQA 1174 (1229)
T ss_pred cchHHHHHHHHHH
Confidence 3333333333333
No 263
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=29.37 E-value=2.8e+02 Score=25.82 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHH----------HhccCCcceEEEeecCCC
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEV----------FSSTGPVEGCKLIRKDKS 94 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~----------f~~~G~v~~v~~~~~~~~ 94 (415)
..-+.+|.-.|||.+. |.||+.+ |...|.|.+|.+.-...+
T Consensus 34 ~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~~ 84 (353)
T PF15053_consen 34 DDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPESR 84 (353)
T ss_pred CcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCcc
Confidence 3446889999999876 6677764 444688988888665543
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.03 E-value=1.1e+02 Score=21.99 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=24.6
Q ss_pred eeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 289 GVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 289 ~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
..|.++....+ +||-||+=.+..+...|++.+.+.
T Consensus 32 l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 32 LNIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ----EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36777777766 999999999999999998866543
No 265
>PF14893 PNMA: PNMA
Probab=27.88 E-value=42 Score=31.23 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=31.1
Q ss_pred eeEEEccCCccCCHHHHHHHHh----hcCCeeeEEEEEeCC--cceEEEEeCCHHH
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFH----SLGAGVIEEVRVQRD--KGFGFVRYSTHAE 312 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~----~~G~~~i~~i~~~~~--~g~afV~f~~~~~ 312 (415)
+.|.|.+||.++++++|.+.+. ..|.-.|..-.+.+. ..-++|+|...-+
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 6799999999999999988765 344112222222222 3457777755433
No 266
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=27.63 E-value=30 Score=31.97 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCc
Q 014955 70 EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (415)
Q Consensus 70 ~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 117 (415)
...|.+++.++|.|..-.+.+.=+.|.+||-....++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888888999888777777777899999999999999999988764
No 267
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.25 E-value=2.2e+02 Score=19.81 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhC
Q 014955 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (415)
Q Consensus 71 ~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (415)
+++.+.+..+| +...++.-....++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777778888 444444333235688888889999888887663
No 268
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=2.8e+02 Score=26.35 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=29.1
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeC--CeeEEEEEccC
Q 014955 185 FGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATK 220 (415)
Q Consensus 185 ~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~~ 220 (415)
||.|++.+.+.+......++|.... +..+.+.|...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 7999999999999999999998875 45566666543
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.75 E-value=1.9e+02 Score=18.73 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=41.1
Q ss_pred eEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCH----HHHHHHHHH
Q 014955 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH----AEAALAIQM 319 (415)
Q Consensus 264 ~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~----~~A~~A~~~ 319 (415)
|+.|.||.-.--...|+..+...- .|.++.+....+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~--GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP--GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCC--CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467778887777888898888875 589999999889999999755 444444443
No 270
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=24.90 E-value=34 Score=31.75 Aligned_cols=22 Identities=55% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhh
Q 014955 5 RLKQQQQQQQQA-LMQQALLQQQ 26 (415)
Q Consensus 5 ~~~qqqqqqq~q-~~~q~~~q~~ 26 (415)
+..|++||||-| ||||.+-..|
T Consensus 305 ~ipq~~qqqqgqgqqqq~qataq 327 (503)
T PF03249_consen 305 RIPQQQQQQQGQGQQQQAQATAQ 327 (503)
T ss_pred ecchHHHhhhccchhHHHHHHHH
No 271
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=24.86 E-value=1.1e+02 Score=29.65 Aligned_cols=18 Identities=50% Similarity=0.379 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 014955 9 QQQQQQQALMQQALLQQQ 26 (415)
Q Consensus 9 qqqqqq~q~~~q~~~q~~ 26 (415)
|..|||||||-|-|+|.|
T Consensus 818 qleqqqqqqqlqiqlqrq 835 (990)
T KOG1819|consen 818 QLEQQQQQQQLQIQLQRQ 835 (990)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444433
No 272
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.79 E-value=76 Score=29.82 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=44.8
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC--------cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
..+.|.+||+..++++|.+-...|- .++....+... .+.+||.|...++...-...++|+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 5689999999999999999888774 24444444321 467999999999966666666776
No 273
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.76 E-value=2.2e+02 Score=18.90 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHH
Q 014955 70 EPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (415)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~ 113 (415)
-.+|.++|.+.| .|.++.......++.--+.+.+.+.|.+++..
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 478888888887 47777665554444445566666666666643
No 274
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.66 E-value=3.5e+02 Score=21.26 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=47.2
Q ss_pred eEEEccCCcc---CCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 264 TVYVGNLAPE---VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 264 ~l~v~nlp~~---~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
.|.|+..... .+-..+.+.+..-| ..++++... .+...|.|.+.++-.+|.+.|... .-++-.+.+..
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~---L~~~y~VAlnl 107 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRT---LPHGYIIAQQD 107 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEee--CCEEEEEECCHHHHHHHHHHHHHH---cCCCCEEEEec
Confidence 4777665433 56678889999887 245555544 458889999999999999998876 22334555444
No 275
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.36 E-value=91 Score=25.96 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=36.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-----CceEEEEEecHHHHHHHHHH
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILS 113 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-----~g~afV~f~~~~~A~~a~~~ 113 (415)
.|++|.. +.+..-++|.++-+ |.+.+|.+..... +|--||.|.+.+.|...++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3567766 33334455555555 7888888766432 47889999999999887754
No 276
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.05 E-value=4.8e+02 Score=24.91 Aligned_cols=34 Identities=3% Similarity=-0.037 Sum_probs=27.3
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCccccCCe--eeEEeeC
Q 014955 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGK--QMKCSWG 338 (415)
Q Consensus 302 ~afV~f~~~~~A~~A~~~l~g~~~~~~~g~--~l~v~~a 338 (415)
||.|+|.+...+......+.|. ++... .+-+.|.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~---Eye~san~~DLRfv 295 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGV---EYENSANVLDLRFV 295 (622)
T ss_pred EEEEEeccchhhHHHHhccCcc---ccccccceeeeeec
Confidence 8999999999999999999998 67653 3455554
No 277
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=1.8e+02 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=25.2
Q ss_pred HHHHHHhhcCC------eeeEEEEE-eCCcceEEEEeCCHHHHHHHH
Q 014955 278 DLHRHFHSLGA------GVIEEVRV-QRDKGFGFVRYSTHAEAALAI 317 (415)
Q Consensus 278 ~L~~~F~~~G~------~~i~~i~~-~~~~g~afV~f~~~~~A~~A~ 317 (415)
.+...|++||+ +.+..+.= .+......|+|.+.+.|..+.
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 45667889983 22222221 111467899999999888765
No 278
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=42 Score=31.64 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=47.2
Q ss_pred cceEEEcCCCcccCH--------HHHHHHhcC--CCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHH
Q 014955 141 HFNIFVGDLSPEVTD--------ATLFACFSV--YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~--------~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 201 (415)
.+.+|+.+....... +++...|.. ++++..+...++..+..++|..|++|...+.+.+...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 355676666655443 489999988 6777888888887677889999999999999988764
No 279
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=15 Score=34.84 Aligned_cols=75 Identities=8% Similarity=-0.194 Sum_probs=54.6
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
..|+..+|...+++++.-+|..||.|..+...+.-..+..+-.+|+...+ .++..++..+.-..+.|..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 45677888899999999999999999888776554455666678887764 3566676666555566666666554
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.12 E-value=82 Score=27.46 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcce
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG 85 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~ 85 (415)
...+++|+-|+|..+|++.|..+.+..|.+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 35577999999999999999999999986544
No 281
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.89 E-value=6.5e+02 Score=23.43 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHH-----------HHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCce
Q 014955 57 RSVYVGNIHTQVTEPLLQE-----------VFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~-----------~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 124 (415)
|+-.+-+|.+.-|..||+- +.++|| ..++|.++.+... -.+.-.+...-..|+.-|-..--.|-.|
T Consensus 64 rrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~~Nir~Al~wLV~~aq~gD~L 141 (362)
T KOG1546|consen 64 RRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE--SPVRIPTGKNIRRALRWLVESAQPGDSL 141 (362)
T ss_pred ceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC--cccccCcHHHHHHHHHHHHhcCCCCCEE
Confidence 4455667888888888763 456788 5677888877542 3345567777788887765544556777
Q ss_pred eeecccccCCCCC----C--CCcceEEEcCCC---cccCHHHHHHHhcCCCCceEEEEeec
Q 014955 125 KVNWAYASGQRED----T--SGHFNIFVGDLS---PEVTDATLFACFSVYPSCSDARVMWD 176 (415)
Q Consensus 125 ~v~~~~~~~~~~~----~--~~~~~l~v~nlp---~~~~~~~l~~~f~~~g~v~~~~~~~~ 176 (415)
.++|+-.-.+..+ + .-.-+|+=-... .-+++++.+.+.++.-.=..+.++.|
T Consensus 142 vfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~D 202 (362)
T KOG1546|consen 142 VFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISD 202 (362)
T ss_pred EEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEee
Confidence 8887754332211 1 111233321111 12557777777776544445555555
No 282
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.42 E-value=70 Score=18.83 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=10.2
Q ss_pred ccCCHHHHHHHHhhcC
Q 014955 272 PEVTQLDLHRHFHSLG 287 (415)
Q Consensus 272 ~~~~~~~L~~~F~~~G 287 (415)
.++++++|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998764
No 283
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.70 E-value=4.1e+02 Score=26.83 Aligned_cols=82 Identities=11% Similarity=0.188 Sum_probs=55.4
Q ss_pred ceEEEEEecHHHHHHHHHHhCCccccCCceee--------------ecccccCC----CCCCCCcceEEEcCCCcccCHH
Q 014955 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV--------------NWAYASGQ----REDTSGHFNIFVGDLSPEVTDA 156 (415)
Q Consensus 95 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v--------------~~~~~~~~----~~~~~~~~~l~v~nlp~~~~~~ 156 (415)
--||+.+.++.--+-..+.|+...+++..|+- +|++.... ..+..++..+|+.+|+.+..++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 36999999999887777778777766544431 11111110 1233456789999999998887
Q ss_pred HHHHHhcCCCCceEEEEeec
Q 014955 157 TLFACFSVYPSCSDARVMWD 176 (415)
Q Consensus 157 ~l~~~f~~~g~v~~~~~~~~ 176 (415)
--.++....-..+++.|.+.
T Consensus 317 VQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHHhCcccccceeecc
Confidence 76777777777788877744
Done!