Query 014955
Match_columns 415
No_of_seqs 320 out of 3130
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 7.3E-46 2.5E-50 339.1 29.1 238 55-341 21-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.5E-45 2.2E-49 334.2 26.0 243 53-341 38-291 (292)
3 3md3_A Nuclear and cytoplasmic 100.0 2.7E-33 9.3E-38 234.7 19.9 162 57-219 1-165 (166)
4 4f02_A Polyadenylate-binding p 100.0 1.1E-33 3.7E-38 246.8 17.3 165 54-221 13-181 (213)
5 4f02_A Polyadenylate-binding p 100.0 3.5E-33 1.2E-37 243.6 18.6 165 139-341 13-181 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-32 6.4E-37 230.1 19.7 161 55-218 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 1.3E-32 4.4E-37 241.0 19.1 168 55-222 27-206 (216)
8 1l3k_A Heterogeneous nuclear r 100.0 3.3E-32 1.1E-36 234.6 19.5 170 53-224 10-186 (196)
9 1fxl_A Paraneoplastic encephal 100.0 5.7E-32 1.9E-36 226.9 18.9 160 56-218 2-167 (167)
10 2qfj_A FBP-interacting repress 100.0 2.1E-32 7.3E-37 239.6 16.5 176 140-344 27-208 (216)
11 1b7f_A Protein (SXL-lethal pro 100.0 1.3E-31 4.3E-36 225.0 20.4 159 140-338 2-168 (168)
12 3md3_A Nuclear and cytoplasmic 100.0 1.7E-31 5.8E-36 223.8 20.3 160 142-340 1-166 (166)
13 1fxl_A Paraneoplastic encephal 100.0 2.6E-31 9.1E-36 222.8 20.8 158 141-338 2-167 (167)
14 2g4b_A Splicing factor U2AF 65 100.0 2E-31 6.8E-36 224.8 18.5 158 55-218 3-171 (172)
15 1l3k_A Heterogeneous nuclear r 100.0 3.2E-31 1.1E-35 228.5 19.8 172 137-344 9-186 (196)
16 3nmr_A Cugbp ELAV-like family 100.0 1.8E-31 6.1E-36 225.7 17.9 162 55-219 2-175 (175)
17 2adc_A Polypyrimidine tract-bi 100.0 7.6E-31 2.6E-35 231.4 22.1 195 138-341 31-228 (229)
18 2cjk_A Nuclear polyadenylated 100.0 7.4E-32 2.5E-36 226.3 13.6 161 55-221 2-166 (167)
19 2yh0_A Splicing factor U2AF 65 100.0 4.7E-31 1.6E-35 227.7 19.0 166 55-223 3-196 (198)
20 3tyt_A Heterogeneous nuclear r 100.0 2.8E-31 9.7E-36 228.9 17.2 161 55-218 3-204 (205)
21 3nmr_A Cugbp ELAV-like family 100.0 8E-31 2.7E-35 221.7 19.6 161 140-339 2-175 (175)
22 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-30 3.7E-35 225.4 20.0 192 141-341 3-197 (198)
23 3pgw_A U1-A; protein-RNA compl 100.0 3.9E-30 1.3E-34 234.5 24.2 196 137-340 5-282 (282)
24 3tyt_A Heterogeneous nuclear r 100.0 2.1E-30 7.3E-35 223.4 19.7 189 140-338 3-204 (205)
25 2adc_A Polypyrimidine tract-bi 100.0 2.9E-30 9.8E-35 227.7 19.7 163 53-221 31-228 (229)
26 2cjk_A Nuclear polyadenylated 100.0 5.5E-31 1.9E-35 220.9 13.1 159 140-341 2-166 (167)
27 1fje_B Nucleolin RBD12, protei 100.0 1.5E-30 5E-35 220.1 15.7 163 52-221 9-174 (175)
28 3smz_A Protein raver-1, ribonu 100.0 7.5E-30 2.6E-34 232.9 20.9 168 55-223 94-266 (284)
29 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-29 3.8E-34 231.5 20.8 162 53-219 6-281 (282)
30 1qm9_A Polypyrimidine tract-bi 100.0 4.9E-30 1.7E-34 221.3 16.3 160 56-221 3-197 (198)
31 1fje_B Nucleolin RBD12, protei 100.0 2E-30 6.7E-35 219.3 12.3 165 137-341 9-174 (175)
32 3sde_A Paraspeckle component 1 100.0 2.8E-29 9.7E-34 225.7 20.0 157 53-221 19-179 (261)
33 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-29 5.3E-34 231.8 17.9 166 55-221 116-291 (292)
34 2yh0_A Splicing factor U2AF 65 100.0 6E-29 2E-33 214.5 20.3 177 140-343 3-196 (198)
35 2g4b_A Splicing factor U2AF 65 100.0 5.4E-29 1.9E-33 209.8 17.6 153 140-339 3-172 (172)
36 3sde_A Paraspeckle component 1 100.0 1.3E-27 4.5E-32 214.9 19.6 153 137-341 18-179 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 4.3E-22 1.5E-26 164.8 14.2 139 85-223 2-152 (158)
38 2i2y_A Fusion protein consists 99.9 1.5E-21 5.2E-26 159.9 11.5 138 179-341 9-148 (150)
39 2kn4_A Immunoglobulin G-bindin 99.9 8.7E-21 3E-25 156.9 15.8 146 170-344 2-153 (158)
40 4f25_A Polyadenylate-binding p 99.9 2.8E-21 9.5E-26 150.5 10.7 109 141-278 5-113 (115)
41 4f25_A Polyadenylate-binding p 99.9 1.8E-21 6.1E-26 151.6 9.4 103 55-157 4-113 (115)
42 2i2y_A Fusion protein consists 99.8 3.3E-21 1.1E-25 157.9 9.9 123 93-221 12-148 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 8.1E-20 2.8E-24 137.8 11.2 80 141-220 19-98 (99)
44 1sjq_A Polypyrimidine tract-bi 99.8 4.6E-19 1.6E-23 133.2 10.6 81 260-345 14-96 (105)
45 3r27_A HnRNP L, heterogeneous 99.8 7.7E-19 2.6E-23 130.6 10.8 82 257-341 16-97 (100)
46 3s8s_A Histone-lysine N-methyl 99.8 1.2E-18 4E-23 134.0 12.0 83 139-221 4-86 (110)
47 3lqv_A PRE-mRNA branch site pr 99.8 4E-19 1.4E-23 138.6 9.0 104 53-167 5-109 (115)
48 2lxi_A RNA-binding protein 10; 99.8 2.7E-19 9.3E-24 132.8 7.3 83 141-223 1-85 (91)
49 2lea_A Serine/arginine-rich sp 99.8 2.6E-19 8.9E-24 143.2 7.5 125 95-223 5-129 (135)
50 1x4d_A Matrin 3; structural ge 99.8 2E-18 6.8E-23 129.8 10.4 79 261-342 14-93 (102)
51 1wex_A Hypothetical protein (r 99.8 5.1E-18 1.7E-22 128.6 12.7 83 258-343 11-93 (104)
52 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-18 5.8E-23 130.5 9.8 75 261-340 18-98 (99)
53 1sjq_A Polypyrimidine tract-bi 99.8 2.1E-18 7E-23 129.7 10.0 81 53-135 13-95 (105)
54 2hvz_A Splicing factor, argini 99.8 9.1E-19 3.1E-23 133.1 8.0 93 57-150 1-100 (101)
55 2lkz_A RNA-binding protein 5; 99.8 1.6E-18 5.5E-23 129.1 9.0 82 139-220 7-94 (95)
56 3md1_A Nuclear and cytoplasmic 99.8 6.3E-18 2.2E-22 123.5 11.9 80 142-221 2-81 (83)
57 2cq1_A PTB-like protein L; RRM 99.8 7.7E-18 2.6E-22 126.8 12.6 82 258-344 11-94 (101)
58 2dgo_A Cytotoxic granule-assoc 99.8 1.3E-17 4.3E-22 130.0 14.1 90 135-224 9-98 (115)
59 2ad9_A Polypyrimidine tract-bi 99.8 4.8E-18 1.6E-22 131.0 11.2 82 258-344 27-110 (119)
60 2cq0_A Eukaryotic translation 99.8 9.2E-18 3.2E-22 128.0 12.6 89 136-224 10-98 (103)
61 2wbr_A GW182, gawky, LD47780P; 99.8 4.2E-18 1.5E-22 121.7 9.8 73 262-339 7-79 (89)
62 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.3E-18 1.8E-22 125.1 10.8 83 139-221 4-86 (87)
63 1whw_A Hypothetical protein ri 99.7 1.2E-17 4.1E-22 126.4 12.3 86 138-223 5-90 (99)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.9E-18 2E-22 140.6 11.4 125 99-223 11-154 (165)
65 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.8E-22 125.5 11.8 86 135-220 9-94 (95)
66 2cpz_A CUG triplet repeat RNA- 99.7 1.5E-17 5E-22 129.6 12.8 89 135-223 19-107 (115)
67 2x1f_A MRNA 3'-END-processing 99.7 8.9E-18 3E-22 126.3 11.1 83 140-222 1-83 (96)
68 2dgs_A DAZ-associated protein 99.7 1.9E-17 6.5E-22 125.2 12.7 86 138-224 7-92 (99)
69 2dnz_A Probable RNA-binding pr 99.7 1.5E-17 5.2E-22 124.8 11.9 85 139-223 3-87 (95)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8.5E-18 2.9E-22 123.4 10.3 82 138-219 4-85 (85)
71 2lkz_A RNA-binding protein 5; 99.7 3.5E-18 1.2E-22 127.3 8.2 80 261-340 8-94 (95)
72 2do4_A Squamous cell carcinoma 99.7 2.2E-17 7.5E-22 125.1 12.8 86 137-223 13-98 (100)
73 3r27_A HnRNP L, heterogeneous 99.7 4.6E-18 1.6E-22 126.4 8.7 78 53-132 18-97 (100)
74 1x5t_A Splicing factor 3B subu 99.7 1.1E-17 3.8E-22 125.8 11.0 86 139-224 3-89 (96)
75 1x4f_A Matrin 3; structural ge 99.7 8.3E-18 2.8E-22 128.2 10.2 83 259-344 22-105 (112)
76 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.6E-22 126.4 11.8 87 138-224 9-95 (102)
77 1x4d_A Matrin 3; structural ge 99.7 4.9E-18 1.7E-22 127.7 8.6 81 52-134 11-94 (102)
78 2lxi_A RNA-binding protein 10; 99.7 2.8E-18 9.5E-23 127.3 7.0 80 56-135 1-86 (91)
79 1x5u_A Splicing factor 3B subu 99.7 1.8E-17 6E-22 126.9 11.7 88 136-223 10-97 (105)
80 2cpj_A Non-POU domain-containi 99.7 1.8E-17 6.3E-22 125.3 11.7 81 259-344 12-92 (99)
81 2dnm_A SRP46 splicing factor; 99.7 1.3E-17 4.3E-22 127.2 10.7 87 137-223 9-95 (103)
82 2khc_A Testis-specific RNP-typ 99.7 1.2E-17 4.1E-22 130.8 10.8 85 135-219 34-118 (118)
83 2e5h_A Zinc finger CCHC-type a 99.7 2E-17 6.7E-22 123.9 11.5 83 137-219 12-94 (94)
84 1why_A Hypothetical protein ri 99.7 3.2E-17 1.1E-21 123.4 12.7 80 259-343 14-95 (97)
85 2wbr_A GW182, gawky, LD47780P; 99.7 8.5E-18 2.9E-22 120.1 8.8 72 56-129 7-78 (89)
86 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.5E-17 8.5E-22 125.6 12.1 84 53-136 12-97 (103)
87 2jrs_A RNA-binding protein 39; 99.7 1.7E-17 5.8E-22 127.3 11.2 86 136-221 21-106 (108)
88 2do0_A HnRNP M, heterogeneous 99.7 5.4E-17 1.8E-21 126.2 14.1 83 259-346 12-99 (114)
89 1p27_B RNA-binding protein 8A; 99.7 1.5E-17 5.1E-22 127.5 10.8 85 138-222 20-104 (106)
90 1x4a_A Splicing factor, argini 99.7 3.9E-17 1.3E-21 125.9 13.1 83 53-135 19-102 (109)
91 2cq3_A RNA-binding protein 9; 99.7 3.2E-17 1.1E-21 125.0 12.4 84 52-135 11-96 (103)
92 3p5t_L Cleavage and polyadenyl 99.7 2.7E-18 9.3E-23 127.4 6.2 81 142-222 2-84 (90)
93 2la6_A RNA-binding protein FUS 99.7 2.2E-17 7.4E-22 124.9 11.3 84 136-219 8-99 (99)
94 2dgo_A Cytotoxic granule-assoc 99.7 7.5E-17 2.6E-21 125.6 14.6 82 259-345 12-99 (115)
95 2ytc_A PRE-mRNA-splicing facto 99.7 1.6E-17 5.6E-22 121.8 10.2 76 259-339 9-85 (85)
96 2dnh_A Bruno-like 5, RNA bindi 99.7 3.7E-17 1.3E-21 125.1 12.5 87 137-224 11-100 (105)
97 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-17 8.7E-22 124.0 11.4 81 52-133 15-95 (97)
98 2d9p_A Polyadenylate-binding p 99.7 2.3E-17 7.7E-22 125.8 11.2 84 53-136 12-97 (103)
99 2err_A Ataxin-2-binding protei 99.7 1.1E-17 3.7E-22 128.7 9.4 80 53-132 26-107 (109)
100 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 9E-22 123.9 11.3 81 53-135 12-94 (101)
101 1x4h_A RNA-binding protein 28; 99.7 3.6E-17 1.2E-21 126.5 12.4 88 136-223 10-103 (111)
102 3lqv_A PRE-mRNA branch site pr 99.7 8.4E-18 2.9E-22 131.0 8.7 104 138-287 5-108 (115)
103 3ns6_A Eukaryotic translation 99.7 5.9E-18 2E-22 128.1 7.5 81 140-220 5-92 (100)
104 1u6f_A Tcubp1, RNA-binding pro 99.7 5.7E-19 2E-23 142.6 1.9 83 53-135 39-125 (139)
105 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 127.3 11.9 85 138-223 4-88 (116)
106 1x5u_A Splicing factor 3B subu 99.7 3.8E-17 1.3E-21 125.0 12.0 83 53-135 12-98 (105)
107 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-17 5.7E-22 128.0 9.9 82 53-136 28-111 (119)
108 2cph_A RNA binding motif prote 99.7 4.3E-17 1.5E-21 125.2 12.2 88 136-223 10-99 (107)
109 2dnz_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 122.7 11.5 83 54-136 3-89 (95)
110 2kxn_B Transformer-2 protein h 99.7 1.9E-17 6.7E-22 131.1 10.4 82 52-133 42-127 (129)
111 1x5s_A Cold-inducible RNA-bind 99.7 2E-17 6.8E-22 125.9 10.0 86 138-223 9-94 (102)
112 1oo0_B CG8781-PA, drosophila Y 99.7 2.9E-17 9.9E-22 126.8 11.1 86 137-222 22-107 (110)
113 1x4g_A Nucleolysin TIAR; struc 99.7 4.8E-17 1.6E-21 125.3 12.3 79 261-344 24-102 (109)
114 2cpf_A RNA binding motif prote 99.7 3E-17 1E-21 123.9 10.8 85 139-223 3-90 (98)
115 2dng_A Eukaryotic translation 99.7 7E-17 2.4E-21 123.0 12.9 85 137-223 11-95 (103)
116 2d9p_A Polyadenylate-binding p 99.7 5.1E-17 1.7E-21 123.8 12.1 87 136-224 10-96 (103)
117 1wex_A Hypothetical protein (r 99.7 3.6E-17 1.2E-21 124.0 11.1 79 54-134 13-93 (104)
118 1x5s_A Cold-inducible RNA-bind 99.7 4.3E-17 1.5E-21 124.0 11.5 83 53-135 9-95 (102)
119 2cpe_A RNA-binding protein EWS 99.7 5.1E-17 1.8E-21 126.1 12.1 88 136-223 10-105 (113)
120 2dgx_A KIAA0430 protein; RRM d 99.7 5.3E-17 1.8E-21 121.9 11.8 78 261-343 8-92 (96)
121 2dgs_A DAZ-associated protein 99.7 5.4E-17 1.8E-21 122.7 11.8 82 53-135 7-92 (99)
122 2dgp_A Bruno-like 4, RNA bindi 99.7 3.1E-17 1.1E-21 125.7 10.7 88 136-223 8-98 (106)
123 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-17 5E-22 127.4 8.5 78 55-132 27-105 (111)
124 2kxn_B Transformer-2 protein h 99.7 2E-17 6.9E-22 131.0 9.6 87 136-222 41-127 (129)
125 2div_A TRNA selenocysteine ass 99.7 3E-17 1E-21 124.2 10.1 85 138-222 6-95 (99)
126 2cq3_A RNA-binding protein 9; 99.7 1.2E-16 4E-21 121.8 13.5 82 258-344 11-96 (103)
127 2dnq_A RNA-binding protein 4B; 99.7 5.5E-17 1.9E-21 120.3 11.4 80 53-136 5-84 (90)
128 2khc_A Testis-specific RNP-typ 99.7 4E-17 1.4E-21 127.7 11.2 78 52-129 36-117 (118)
129 2dnm_A SRP46 splicing factor; 99.7 4.1E-17 1.4E-21 124.4 10.9 83 53-135 10-96 (103)
130 2jwn_A Embryonic polyadenylate 99.7 4.1E-18 1.4E-22 134.7 5.5 82 140-222 35-116 (124)
131 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-16 4.1E-21 121.8 13.4 81 259-344 12-96 (103)
132 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.2E-22 132.9 8.8 119 185-344 6-130 (135)
133 2dnq_A RNA-binding protein 4B; 99.7 1.1E-16 3.6E-21 118.8 12.8 78 260-344 6-83 (90)
134 3s8s_A Histone-lysine N-methyl 99.7 3.3E-17 1.1E-21 125.8 10.3 77 260-341 4-86 (110)
135 1u6f_A Tcubp1, RNA-binding pro 99.7 5.7E-17 1.9E-21 130.8 12.0 88 137-224 38-125 (139)
136 2e5h_A Zinc finger CCHC-type a 99.7 4.2E-17 1.4E-21 122.1 10.4 78 53-130 13-94 (94)
137 2cqp_A RNA-binding protein 12; 99.7 4.3E-17 1.5E-21 123.1 10.4 84 138-221 12-95 (98)
138 1x4f_A Matrin 3; structural ge 99.7 4.2E-17 1.4E-21 124.3 10.3 80 53-134 22-104 (112)
139 1x4a_A Splicing factor, argini 99.7 2E-16 7E-21 121.8 14.3 81 258-343 18-101 (109)
140 2ywk_A Putative RNA-binding pr 99.7 4.7E-17 1.6E-21 122.1 10.4 83 137-220 12-94 (95)
141 4a8x_A RNA-binding protein wit 99.7 3.3E-17 1.1E-21 121.0 9.4 79 55-133 3-86 (88)
142 3s7r_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 119.0 11.1 81 137-218 7-87 (87)
143 1wi8_A EIF-4B, eukaryotic tran 99.7 8.7E-17 3E-21 122.7 12.0 85 137-223 11-96 (104)
144 2la4_A Nuclear and cytoplasmic 99.7 2.9E-17 9.8E-22 124.7 9.2 75 261-340 26-100 (101)
145 2la4_A Nuclear and cytoplasmic 99.7 9E-18 3.1E-22 127.5 6.4 76 54-131 25-100 (101)
146 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.3E-21 124.2 13.1 82 257-343 20-107 (115)
147 1x4h_A RNA-binding protein 28; 99.7 8.9E-17 3E-21 124.3 12.1 83 53-135 12-104 (111)
148 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.2E-17 1.4E-21 119.6 9.7 77 53-129 4-84 (85)
149 2cqd_A RNA-binding region cont 99.7 7.8E-17 2.7E-21 125.6 11.8 87 136-223 12-98 (116)
150 2cpj_A Non-POU domain-containi 99.7 7.1E-17 2.4E-21 122.0 11.2 80 53-134 12-91 (99)
151 1why_A Hypothetical protein ri 99.7 1E-16 3.5E-21 120.7 11.9 79 53-133 14-94 (97)
152 2dhg_A TRNA selenocysteine ass 99.7 4.1E-17 1.4E-21 124.6 9.9 86 137-223 5-92 (104)
153 1whw_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 120.5 12.7 80 260-344 6-91 (99)
154 1p27_B RNA-binding protein 8A; 99.7 5.3E-17 1.8E-21 124.4 10.5 81 53-133 20-104 (106)
155 1x5t_A Splicing factor 3B subu 99.7 4.2E-17 1.4E-21 122.6 9.7 82 54-135 3-89 (96)
156 2cqc_A Arginine/serine-rich sp 99.7 7.1E-17 2.4E-21 121.1 10.9 80 52-131 11-94 (95)
157 2cph_A RNA binding motif prote 99.7 1.5E-16 5.1E-21 122.2 12.9 81 259-344 12-100 (107)
158 2do0_A HnRNP M, heterogeneous 99.7 2.4E-16 8.1E-21 122.5 14.2 85 137-222 11-95 (114)
159 2cpf_A RNA binding motif prote 99.7 6.9E-17 2.4E-21 121.9 10.8 80 261-345 4-92 (98)
160 2dgp_A Bruno-like 4, RNA bindi 99.7 9.6E-17 3.3E-21 123.0 11.7 84 53-136 10-100 (106)
161 3ucg_A Polyadenylate-binding p 99.7 6.8E-17 2.3E-21 119.6 10.5 80 141-221 6-85 (89)
162 3pgw_S U1-70K; protein-RNA com 99.7 1E-17 3.4E-22 160.1 7.5 150 73-223 9-184 (437)
163 2x1f_A MRNA 3'-END-processing 99.7 4.4E-17 1.5E-21 122.5 9.4 79 55-133 1-83 (96)
164 3ulh_A THO complex subunit 4; 99.7 9.8E-17 3.4E-21 123.2 11.6 82 137-219 25-106 (107)
165 1sjr_A Polypyrimidine tract-bi 99.7 7.8E-17 2.7E-21 130.6 11.4 81 53-133 43-125 (164)
166 1x4c_A Splicing factor, argini 99.7 2.2E-16 7.7E-21 121.2 13.4 79 260-344 13-96 (108)
167 4a8x_A RNA-binding protein wit 99.7 6.5E-17 2.2E-21 119.5 10.0 81 141-221 4-85 (88)
168 2xnq_A Nuclear polyadenylated 99.7 6E-17 2E-21 121.7 9.9 76 53-132 19-95 (97)
169 2cq2_A Hypothetical protein LO 99.7 5.6E-17 1.9E-21 123.6 9.8 80 260-344 23-109 (114)
170 2cqd_A RNA-binding region cont 99.7 9.6E-17 3.3E-21 125.1 11.2 85 52-137 13-101 (116)
171 3n9u_C Cleavage and polyadenyl 99.7 5.1E-17 1.8E-21 132.9 10.1 82 140-221 54-137 (156)
172 1whx_A Hypothetical protein ri 99.7 6.5E-17 2.2E-21 124.7 10.0 78 261-343 9-86 (111)
173 2la6_A RNA-binding protein FUS 99.7 9.9E-17 3.4E-21 121.2 10.8 77 53-129 10-98 (99)
174 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.5E-17 2.2E-21 119.2 9.6 76 261-341 5-86 (87)
175 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.3E-17 2.8E-21 122.4 10.5 80 260-344 10-95 (102)
176 2rs2_A Musashi-1, RNA-binding 99.7 9.5E-17 3.3E-21 123.4 10.7 86 137-223 21-106 (109)
177 1s79_A Lupus LA protein; RRM, 99.7 4.4E-17 1.5E-21 123.5 8.6 81 138-220 8-88 (103)
178 2dh8_A DAZ-associated protein 99.7 5.4E-17 1.9E-21 124.1 9.2 86 137-223 12-97 (105)
179 2cq0_A Eukaryotic translation 99.7 1.3E-16 4.4E-21 121.6 11.3 81 259-344 12-98 (103)
180 3md1_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 117.0 10.3 74 263-341 2-81 (83)
181 2ek1_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 122.4 8.4 82 139-220 13-94 (95)
182 2jvo_A Nucleolar protein 3; nu 99.7 6E-17 2.1E-21 124.2 9.4 78 53-134 28-105 (108)
183 2do4_A Squamous cell carcinoma 99.7 2E-16 6.7E-21 119.9 12.1 79 260-343 15-98 (100)
184 1x4c_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 121.9 11.8 78 54-134 13-95 (108)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.2E-17 1.1E-21 124.1 7.6 84 136-221 14-98 (100)
186 2dgw_A Probable RNA-binding pr 99.7 2.3E-16 8E-21 117.2 12.2 82 138-222 7-88 (91)
187 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-16 7.4E-21 120.8 12.3 80 260-344 13-100 (105)
188 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.4E-21 123.5 10.5 82 53-136 22-103 (109)
189 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-16 4.4E-21 118.9 10.7 84 138-223 5-88 (92)
190 2ytc_A PRE-mRNA-splicing facto 99.7 9.4E-17 3.2E-21 117.7 9.8 75 53-129 9-84 (85)
191 1p1t_A Cleavage stimulation fa 99.7 6.1E-17 2.1E-21 123.7 9.0 83 140-222 7-89 (104)
192 2dgv_A HnRNP M, heterogeneous 99.7 1E-16 3.4E-21 119.5 9.9 80 260-344 6-89 (92)
193 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-16 4.5E-21 121.7 10.8 81 53-135 12-97 (104)
194 2dgu_A Heterogeneous nuclear r 99.7 4.2E-16 1.4E-20 118.7 13.5 78 260-344 9-86 (103)
195 3ex7_B RNA-binding protein 8A; 99.7 1E-16 3.5E-21 127.0 10.3 88 137-224 18-105 (126)
196 2mss_A Protein (musashi1); RNA 99.7 3.3E-17 1.1E-21 117.1 6.8 75 143-218 1-75 (75)
197 2cqg_A TDP-43, TAR DNA-binding 99.7 3.8E-16 1.3E-20 119.0 13.1 86 136-223 10-95 (103)
198 2dgt_A RNA-binding protein 30; 99.7 3.1E-16 1.1E-20 116.7 12.3 78 259-343 7-84 (92)
199 2dnp_A RNA-binding protein 14; 99.7 2.7E-16 9.2E-21 116.6 11.9 77 260-343 7-83 (90)
200 1x4e_A RNA binding motif, sing 99.7 1.7E-17 5.8E-22 121.7 5.3 81 139-219 3-83 (85)
201 2dgt_A RNA-binding protein 30; 99.7 2E-16 6.7E-21 117.8 11.2 79 53-135 7-85 (92)
202 2fy1_A RNA-binding motif prote 99.7 2.7E-16 9.1E-21 122.3 12.3 80 261-345 6-90 (116)
203 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4E-21 119.9 9.9 78 258-340 12-94 (95)
204 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.3E-21 119.3 10.6 81 139-222 7-91 (96)
205 2jrs_A RNA-binding protein 39; 99.7 2.7E-16 9.2E-21 120.6 12.1 82 256-342 20-107 (108)
206 2m2b_A RNA-binding protein 10; 99.7 3.9E-17 1.3E-21 130.1 7.6 87 136-223 18-110 (131)
207 2m2b_A RNA-binding protein 10; 99.7 1.4E-16 4.8E-21 126.9 10.7 82 53-135 20-111 (131)
208 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.4E-16 8.1E-21 129.8 12.4 86 138-223 36-121 (156)
209 2cpe_A RNA-binding protein EWS 99.7 2E-16 6.9E-21 122.7 11.3 83 53-135 12-106 (113)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.8E-17 1.3E-21 123.7 6.9 78 53-132 16-98 (100)
211 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.4E-21 125.4 10.1 79 55-133 28-111 (127)
212 2div_A TRNA selenocysteine ass 99.7 1.7E-16 5.8E-21 120.0 10.4 81 53-133 6-95 (99)
213 2cpd_A Apobec-1 stimulating pr 99.7 5.2E-16 1.8E-20 117.2 13.1 81 258-343 11-91 (99)
214 2kt5_A RNA and export factor-b 99.7 3.3E-16 1.1E-20 123.6 12.4 86 137-223 31-116 (124)
215 3p5t_L Cleavage and polyadenyl 99.7 3.1E-17 1.1E-21 121.6 6.0 78 57-134 2-85 (90)
216 2err_A Ataxin-2-binding protei 99.7 1.2E-16 4E-21 122.9 9.4 79 258-341 25-107 (109)
217 3n9u_C Cleavage and polyadenyl 99.7 8.1E-17 2.8E-21 131.8 8.9 79 54-132 53-137 (156)
218 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.9E-21 119.4 9.0 78 261-344 7-86 (93)
219 2e44_A Insulin-like growth fac 99.7 2.1E-16 7.4E-21 118.7 10.5 79 54-132 13-92 (96)
220 2dng_A Eukaryotic translation 99.7 2.4E-16 8.2E-21 120.0 10.9 81 53-135 12-96 (103)
221 2xnq_A Nuclear polyadenylated 99.7 2.8E-16 9.5E-21 118.0 11.0 77 258-341 18-95 (97)
222 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.8E-21 132.3 10.2 136 188-343 11-154 (165)
223 2cq4_A RNA binding motif prote 99.7 9.5E-17 3.3E-21 124.7 8.6 80 53-133 22-105 (114)
224 2a3j_A U1 small nuclear ribonu 99.7 2.4E-16 8.3E-21 123.8 10.9 78 260-342 27-111 (127)
225 2dnp_A RNA-binding protein 14; 99.7 2.2E-16 7.4E-21 117.1 10.1 78 53-134 6-83 (90)
226 2dgu_A Heterogeneous nuclear r 99.7 2.8E-16 9.4E-21 119.7 10.9 78 54-135 9-86 (103)
227 2hvz_A Splicing factor, argini 99.7 2.1E-16 7.2E-21 119.9 10.2 77 263-344 1-78 (101)
228 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6E-17 2.1E-21 116.4 6.7 76 142-218 1-76 (77)
229 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-16 6.5E-21 122.2 9.9 82 53-134 23-108 (110)
230 2kvi_A Nuclear polyadenylated 99.7 1.8E-16 6.2E-21 119.0 9.6 79 53-135 7-86 (96)
231 1s79_A Lupus LA protein; RRM, 99.7 1.2E-16 4E-21 121.2 8.5 78 53-131 8-88 (103)
232 1wf1_A RNA-binding protein RAL 99.7 2.9E-16 1E-20 121.1 10.9 96 119-222 5-101 (110)
233 1x5p_A Negative elongation fac 99.7 7.5E-16 2.6E-20 115.9 12.9 78 260-344 13-90 (97)
234 2cpi_A CCR4-NOT transcription 99.7 2.4E-16 8.2E-21 121.7 10.4 84 139-222 13-102 (111)
235 2dis_A Unnamed protein product 99.7 2.3E-16 7.7E-21 121.6 10.1 85 139-223 6-94 (109)
236 2jvo_A Nucleolar protein 3; nu 99.7 2.4E-16 8.1E-21 120.8 10.0 78 258-342 27-104 (108)
237 2kt5_A RNA and export factor-b 99.7 7.1E-16 2.4E-20 121.7 13.1 83 52-134 31-116 (124)
238 2cpd_A Apobec-1 stimulating pr 99.7 5.6E-16 1.9E-20 117.1 12.0 78 53-134 12-91 (99)
239 2dhg_A TRNA selenocysteine ass 99.7 3.3E-16 1.1E-20 119.5 10.7 79 261-344 8-93 (104)
240 1x4b_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 122.1 10.8 84 139-223 25-108 (116)
241 2e5j_A Methenyltetrahydrofolat 99.7 7.7E-16 2.6E-20 115.8 12.3 79 260-342 17-95 (97)
242 1x4e_A RNA binding motif, sing 99.7 6E-17 2.1E-21 118.8 6.0 77 54-130 3-83 (85)
243 2ki2_A SS-DNA binding protein 99.7 3.1E-17 1.1E-21 121.7 4.4 80 142-222 2-81 (90)
244 1x5o_A RNA binding motif, sing 99.7 4.1E-16 1.4E-20 121.1 11.0 84 137-221 21-112 (114)
245 2cqp_A RNA-binding protein 12; 99.7 2.7E-16 9.2E-21 118.6 9.6 79 54-132 13-95 (98)
246 3ns6_A Eukaryotic translation 99.7 9.5E-17 3.3E-21 121.4 7.1 79 54-132 4-93 (100)
247 2dh8_A DAZ-associated protein 99.7 4.1E-16 1.4E-20 119.2 10.6 82 53-135 13-98 (105)
248 2cq4_A RNA binding motif prote 99.7 2.1E-16 7.1E-21 122.8 9.1 81 140-221 24-104 (114)
249 2cpx_A Hypothetical protein FL 99.7 7E-16 2.4E-20 120.0 12.0 84 53-136 22-109 (115)
250 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.5E-16 1.2E-20 126.3 10.6 83 136-218 58-140 (140)
251 2dis_A Unnamed protein product 99.7 8.4E-16 2.9E-20 118.3 12.2 79 261-344 7-95 (109)
252 2cpy_A RNA-binding protein 12; 99.7 2.4E-16 8.2E-21 122.3 9.1 83 137-221 11-94 (114)
253 3s7r_A Heterogeneous nuclear r 99.7 2.8E-16 9.7E-21 115.7 8.9 76 53-129 8-87 (87)
254 2cpi_A CCR4-NOT transcription 99.7 3.6E-16 1.2E-20 120.7 9.8 78 261-343 14-103 (111)
255 1wf1_A RNA-binding protein RAL 99.7 1E-15 3.5E-20 118.0 12.2 76 261-343 26-102 (110)
256 2fc9_A NCL protein; structure 99.7 2.7E-16 9.1E-21 119.4 8.8 80 53-135 12-94 (101)
257 2cqh_A IGF-II mRNA-binding pro 99.7 2.6E-16 8.8E-21 117.5 8.5 78 54-134 6-85 (93)
258 1wg5_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 118.2 10.4 83 138-222 12-95 (104)
259 2diu_A KIAA0430 protein; struc 99.7 7.9E-16 2.7E-20 110.9 10.5 76 55-136 7-88 (96)
260 1whx_A Hypothetical protein ri 99.7 3.4E-16 1.2E-20 120.7 9.3 77 55-133 9-85 (111)
261 2db1_A Heterogeneous nuclear r 99.7 4.4E-16 1.5E-20 121.5 9.9 82 138-221 14-98 (118)
262 2nlw_A Eukaryotic translation 99.7 2.9E-16 9.8E-21 119.9 8.7 82 138-221 12-100 (105)
263 1wez_A HnRNP H', FTP-3, hetero 99.7 3.7E-16 1.3E-20 118.3 9.2 82 138-222 12-93 (102)
264 2hgl_A HNRPF protein, heteroge 99.7 2.8E-16 9.7E-21 124.9 8.9 81 138-220 41-124 (136)
265 2rs2_A Musashi-1, RNA-binding 99.7 3E-16 1E-20 120.6 8.7 81 53-134 22-106 (109)
266 2fc9_A NCL protein; structure 99.7 9.6E-16 3.3E-20 116.2 11.5 83 137-223 11-93 (101)
267 2diu_A KIAA0430 protein; struc 99.7 1.4E-15 4.7E-20 109.6 11.5 75 262-345 8-88 (96)
268 3ex7_B RNA-binding protein 8A; 99.7 5.3E-16 1.8E-20 122.8 10.4 82 258-344 18-105 (126)
269 2fc8_A NCL protein; structure 99.7 1E-15 3.4E-20 116.4 11.5 85 136-223 10-94 (102)
270 1nu4_A U1A RNA binding domain; 99.7 4.2E-16 1.4E-20 117.3 9.3 78 260-342 6-90 (97)
271 2nlw_A Eukaryotic translation 99.7 3.6E-16 1.2E-20 119.4 9.0 81 53-133 12-101 (105)
272 2jvr_A Nucleolar protein 3; RN 99.6 3.3E-16 1.1E-20 119.8 8.6 76 262-341 28-105 (111)
273 3ucg_A Polyadenylate-binding p 99.6 4.8E-16 1.7E-20 115.0 9.2 74 262-341 6-85 (89)
274 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.2E-16 2.5E-20 124.5 11.0 78 52-129 59-140 (140)
275 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.9E-20 116.7 13.6 75 263-342 26-103 (124)
276 1nu4_A U1A RNA binding domain; 99.6 2.5E-16 8.4E-21 118.6 7.6 81 53-133 5-90 (97)
277 3ulh_A THO complex subunit 4; 99.6 7E-16 2.4E-20 118.4 10.3 77 258-339 25-106 (107)
278 2kvi_A Nuclear polyadenylated 99.6 3.8E-16 1.3E-20 117.2 8.5 78 259-343 7-85 (96)
279 3zzy_A Polypyrimidine tract-bi 99.6 7.6E-16 2.6E-20 120.1 10.3 80 53-133 25-107 (130)
280 1x5p_A Negative elongation fac 99.6 1.6E-15 5.4E-20 114.0 11.8 79 53-135 12-90 (97)
281 1p1t_A Cleavage stimulation fa 99.6 2.4E-16 8.1E-21 120.3 7.2 77 261-342 7-89 (104)
282 2krb_A Eukaryotic translation 99.6 2.7E-16 9.4E-21 114.0 7.1 72 56-127 1-81 (81)
283 2ek1_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 117.6 7.5 76 55-130 14-93 (95)
284 2cpy_A RNA-binding protein 12; 99.6 4.2E-16 1.4E-20 120.9 8.4 79 53-132 12-94 (114)
285 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.2E-20 115.1 11.8 81 53-135 12-96 (103)
286 2e5i_A Heterogeneous nuclear r 99.6 2.9E-15 9.9E-20 116.5 12.7 79 53-133 22-103 (124)
287 2dgw_A Probable RNA-binding pr 99.6 1.1E-15 3.8E-20 113.5 9.9 79 53-133 7-88 (91)
288 2mss_A Protein (musashi1); RNA 99.6 3.8E-16 1.3E-20 111.5 7.0 71 58-129 1-75 (75)
289 1fj7_A Nucleolin RBD1, protein 99.6 8.9E-17 3.1E-21 122.0 3.8 84 138-223 14-97 (101)
290 1wel_A RNA-binding protein 12; 99.6 2.8E-16 9.7E-21 123.9 6.8 82 138-220 22-103 (124)
291 1iqt_A AUF1, heterogeneous nuc 99.6 1.5E-16 5.2E-21 113.6 4.7 75 143-218 1-75 (75)
292 2krb_A Eukaryotic translation 99.6 2.2E-16 7.5E-21 114.5 5.5 72 142-215 2-80 (81)
293 2ki2_A SS-DNA binding protein 99.6 1.8E-16 6E-21 117.6 5.1 77 57-134 2-82 (90)
294 1x4b_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 119.4 9.6 81 54-135 25-109 (116)
295 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.3E-16 1.1E-20 112.4 6.4 72 57-129 1-76 (77)
296 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.4E-21 126.7 5.1 123 95-222 2-124 (139)
297 2cq2_A Hypothetical protein LO 99.6 6.7E-16 2.3E-20 117.7 8.4 76 55-132 24-106 (114)
298 2db1_A Heterogeneous nuclear r 99.6 6E-16 2E-20 120.7 8.2 78 53-131 14-97 (118)
299 1wg5_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 115.2 10.6 80 53-133 12-95 (104)
300 2dnn_A RNA-binding protein 12; 99.6 1.4E-15 4.6E-20 116.2 9.8 78 140-220 15-92 (109)
301 2cpx_A Hypothetical protein FL 99.6 3.3E-15 1.1E-19 116.2 12.3 80 260-344 23-108 (115)
302 2lmi_A GRSF-1, G-rich sequence 99.6 3.9E-16 1.3E-20 119.6 6.6 82 137-220 7-91 (107)
303 1wez_A HnRNP H', FTP-3, hetero 99.6 9.6E-16 3.3E-20 116.1 8.5 79 53-133 12-93 (102)
304 3q2s_C Cleavage and polyadenyl 99.6 6.1E-16 2.1E-20 135.1 8.5 81 140-220 67-149 (229)
305 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.8E-20 112.1 9.2 75 262-342 5-79 (88)
306 1fjc_A Nucleolin RBD2, protein 99.6 1E-15 3.5E-20 114.9 8.6 82 137-223 12-93 (96)
307 1wg1_A KIAA1579 protein, homol 99.6 6.7E-16 2.3E-20 113.8 7.4 75 55-132 4-78 (88)
308 1fjc_A Nucleolin RBD2, protein 99.6 6E-16 2E-20 116.2 7.2 81 53-134 13-93 (96)
309 1x5o_A RNA binding motif, sing 99.6 3.4E-15 1.1E-19 115.9 11.7 77 260-341 23-112 (114)
310 2e5g_A U6 snRNA-specific termi 99.6 2.8E-15 9.7E-20 111.9 10.9 77 262-344 8-85 (94)
311 2e5g_A U6 snRNA-specific termi 99.6 2.4E-15 8.2E-20 112.3 10.3 77 54-133 6-83 (94)
312 1sjr_A Polypyrimidine tract-bi 99.6 2.2E-15 7.6E-20 122.0 10.7 76 262-342 46-125 (164)
313 1wel_A RNA-binding protein 12; 99.6 1.2E-15 4E-20 120.4 8.8 78 53-131 22-103 (124)
314 3zzy_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 116.7 10.2 75 263-342 29-107 (130)
315 2j8a_A Histone-lysine N-methyl 99.6 1.6E-15 5.4E-20 115.8 8.3 79 142-220 3-95 (136)
316 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-15 3.9E-20 117.0 7.6 78 53-131 8-91 (107)
317 2hgl_A HNRPF protein, heteroge 99.6 1E-15 3.6E-20 121.6 7.6 78 53-131 41-124 (136)
318 2lcw_A RNA-binding protein FUS 99.4 5.2E-17 1.8E-21 126.6 0.0 86 138-223 4-97 (116)
319 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.2E-15 1.1E-19 122.9 10.7 78 260-342 37-120 (156)
320 2e44_A Insulin-like growth fac 99.6 6.2E-15 2.1E-19 110.6 11.2 76 261-341 14-92 (96)
321 2fc8_A NCL protein; structure 99.6 6E-15 2.1E-19 112.0 11.1 81 259-344 12-95 (102)
322 2xs2_A Deleted in azoospermia- 99.6 8.5E-16 2.9E-20 116.8 6.3 82 139-223 7-88 (102)
323 3beg_B Splicing factor, argini 99.6 3.9E-15 1.3E-19 115.5 10.0 75 261-341 15-94 (115)
324 2jwn_A Embryonic polyadenylate 99.6 2.7E-15 9.2E-20 118.4 9.2 76 262-343 36-117 (124)
325 2dnn_A RNA-binding protein 12; 99.6 2E-15 6.9E-20 115.2 8.1 76 54-131 14-92 (109)
326 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-15 4.6E-20 118.8 7.2 80 139-220 21-104 (123)
327 1fj7_A Nucleolin RBD1, protein 99.6 6.5E-15 2.2E-19 111.6 10.7 76 261-342 16-96 (101)
328 3beg_B Splicing factor, argini 99.6 2E-15 6.9E-20 117.1 7.9 70 55-127 15-84 (115)
329 2hzc_A Splicing factor U2AF 65 99.6 2.4E-15 8.2E-20 110.7 7.8 72 54-128 4-86 (87)
330 2f3j_A RNA and export factor b 99.6 4.1E-15 1.4E-19 124.4 10.2 83 138-221 85-167 (177)
331 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-15 4E-20 108.9 5.8 71 58-129 1-75 (75)
332 2bz2_A Negative elongation fac 99.6 4.7E-15 1.6E-19 115.9 9.7 77 260-343 37-113 (121)
333 3d2w_A TAR DNA-binding protein 99.6 3.5E-15 1.2E-19 109.9 8.1 75 54-133 9-85 (89)
334 2f3j_A RNA and export factor b 99.6 1.6E-14 5.4E-19 120.8 13.0 82 52-133 84-168 (177)
335 2bz2_A Negative elongation fac 99.6 6E-15 2.1E-19 115.3 9.7 78 53-134 36-113 (121)
336 3pgw_S U1-70K; protein-RNA com 99.6 8.8E-16 3E-20 146.6 5.9 77 261-342 101-183 (437)
337 3u1l_A PRE-mRNA-splicing facto 99.6 4E-15 1.4E-19 129.0 9.4 78 261-343 133-231 (240)
338 2hgm_A HNRPF protein, heteroge 99.6 2.4E-15 8.2E-20 117.5 7.0 79 139-220 40-120 (126)
339 3d2w_A TAR DNA-binding protein 99.6 7.8E-15 2.7E-19 108.1 9.3 77 259-342 8-85 (89)
340 1wf0_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.7E-20 110.7 6.2 79 54-135 3-81 (88)
341 2hzc_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 107.1 9.5 73 261-337 5-86 (87)
342 3egn_A RNA-binding protein 40; 99.6 2.6E-15 8.9E-20 121.6 6.5 86 138-223 42-132 (143)
343 2hgn_A Heterogeneous nuclear r 99.6 2.2E-15 7.6E-20 120.1 5.8 79 53-133 43-124 (139)
344 2pe8_A Splicing factor 45; RRM 99.6 2.7E-14 9.4E-19 108.2 11.0 82 139-220 6-93 (105)
345 2dha_A FLJ20171 protein; RRM d 99.6 5.4E-15 1.8E-19 115.3 7.1 76 54-130 21-103 (123)
346 2lcw_A RNA-binding protein FUS 99.3 3.6E-16 1.2E-20 121.8 0.0 82 54-135 5-98 (116)
347 3egn_A RNA-binding protein 40; 99.5 7E-15 2.4E-19 119.0 7.5 79 260-343 43-132 (143)
348 2voo_A Lupus LA protein; RNA-b 99.5 2.7E-14 9.2E-19 121.2 11.3 117 103-221 63-187 (193)
349 2hgm_A HNRPF protein, heteroge 99.5 1E-14 3.4E-19 114.0 7.7 77 53-131 39-120 (126)
350 1wf0_A TDP-43, TAR DNA-binding 99.5 1E-14 3.4E-19 107.5 7.2 75 262-343 5-80 (88)
351 3q2s_C Cleavage and polyadenyl 99.5 9.9E-15 3.4E-19 127.4 8.1 77 55-131 67-149 (229)
352 2dnl_A Cytoplasmic polyadenyla 99.5 4.9E-14 1.7E-18 109.1 10.1 77 139-218 6-85 (114)
353 2pe8_A Splicing factor 45; RRM 99.5 3.9E-14 1.3E-18 107.4 8.9 79 53-131 5-93 (105)
354 2dit_A HIV TAT specific factor 99.5 1E-13 3.5E-18 106.9 11.1 83 52-134 11-104 (112)
355 2xs2_A Deleted in azoospermia- 99.5 1.1E-14 3.7E-19 110.6 5.3 76 260-342 7-87 (102)
356 3u1l_A PRE-mRNA-splicing facto 99.5 2.9E-14 9.8E-19 123.6 8.3 79 53-133 131-230 (240)
357 2dnl_A Cytoplasmic polyadenyla 99.5 5.8E-14 2E-18 108.7 7.9 72 54-128 6-84 (114)
358 3v4m_A Splicing factor U2AF 65 99.5 3.2E-13 1.1E-17 102.4 9.6 82 139-220 3-96 (105)
359 2j8a_A Histone-lysine N-methyl 99.4 1.2E-13 4.1E-18 105.4 6.9 74 57-130 3-94 (136)
360 2dit_A HIV TAT specific factor 99.4 1.2E-12 4.2E-17 100.8 12.3 78 260-342 13-103 (112)
361 2voo_A Lupus LA protein; RNA-b 99.4 8.9E-13 3E-17 111.9 11.9 73 263-341 110-187 (193)
362 3ue2_A Poly(U)-binding-splicin 99.4 6.3E-13 2.2E-17 102.6 9.6 81 140-220 19-108 (118)
363 3v4m_A Splicing factor U2AF 65 99.4 7.1E-13 2.4E-17 100.4 8.8 75 260-339 3-95 (105)
364 1jmt_A Splicing factor U2AF 35 99.4 2E-13 6.8E-18 103.4 5.7 72 146-218 20-103 (104)
365 3tht_A Alkylated DNA repair pr 99.4 6.9E-13 2.3E-17 121.3 9.3 80 259-340 15-98 (345)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 1E-11 3.5E-16 92.7 12.8 74 263-343 11-92 (100)
367 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.6E-17 99.2 9.0 79 53-131 4-92 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 8E-12 2.7E-16 93.3 11.6 76 56-134 10-92 (100)
369 3ue2_A Poly(U)-binding-splicin 99.3 1.8E-12 6.2E-17 100.1 7.7 77 55-131 19-108 (118)
370 3tht_A Alkylated DNA repair pr 99.3 4.4E-12 1.5E-16 116.0 8.4 75 53-129 15-96 (345)
371 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.9E-16 94.9 9.4 74 261-339 6-91 (114)
372 1jmt_A Splicing factor U2AF 35 99.3 1.9E-12 6.5E-17 97.9 4.8 67 267-338 20-103 (104)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.7E-15 82.9 8.1 74 259-340 4-85 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 4.9E-10 1.7E-14 85.7 9.9 76 257-337 13-92 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 5.4E-10 1.8E-14 85.5 8.4 73 55-129 17-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 5.8E-10 2E-14 80.0 7.2 74 258-339 11-93 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.9E-14 78.2 8.2 74 139-221 5-86 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 5.4E-09 1.9E-13 75.0 5.6 72 139-219 13-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.8 9.6E-09 3.3E-13 89.2 8.2 66 154-219 142-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.8 3.9E-08 1.3E-12 71.8 9.4 69 263-336 22-95 (117)
381 3dxb_A Thioredoxin N-terminall 98.6 5.2E-08 1.8E-12 84.6 7.8 61 274-339 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 6.1E-07 2.1E-11 65.5 8.1 71 55-127 20-95 (117)
383 1wey_A Calcipressin 1; structu 98.4 1.4E-06 4.9E-11 63.6 8.9 73 263-340 6-83 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.3 3.5E-05 1.2E-09 55.9 13.0 72 262-339 8-82 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 1.2E-05 4.2E-10 58.3 10.0 89 54-154 6-99 (104)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00012 4.3E-09 52.5 7.4 65 57-121 2-72 (91)
387 1wey_A Calcipressin 1; structu 97.7 0.00029 9.9E-09 51.4 8.8 73 142-220 6-83 (104)
388 1whv_A Poly(A)-specific ribonu 97.6 0.00025 8.7E-09 50.7 7.7 56 55-115 15-70 (100)
389 1whv_A Poly(A)-specific ribonu 97.5 0.00078 2.7E-08 48.2 8.7 54 263-321 17-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.0025 8.7E-08 45.7 9.4 67 142-208 2-70 (91)
391 3ctr_A Poly(A)-specific ribonu 97.3 0.00039 1.3E-08 50.0 4.9 54 58-115 7-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 97.2 0.0014 4.9E-08 49.2 7.7 71 55-129 23-94 (119)
393 2l08_A Regulator of nonsense t 97.2 0.00045 1.5E-08 49.8 4.5 66 56-121 9-80 (97)
394 1wwh_A Nucleoporin 35, nucleop 97.0 0.0041 1.4E-07 46.7 8.9 71 262-339 24-95 (119)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.00099 3.4E-08 47.9 4.5 54 263-321 7-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.7 0.001 3.4E-08 63.0 3.7 55 56-112 53-107 (464)
397 2l08_A Regulator of nonsense t 96.5 0.0087 3E-07 43.1 6.7 68 141-208 9-78 (97)
398 3p3d_A Nucleoporin 53; structu 96.4 0.0038 1.3E-07 47.5 4.6 71 57-129 8-96 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0058 2E-07 57.8 3.5 53 263-318 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.1 0.027 9.2E-07 42.9 4.8 70 263-339 8-97 (132)
401 3d45_A Poly(A)-specific ribonu 87.7 1.7 5.7E-05 41.9 8.4 56 56-116 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 81.9 4.4 0.00015 39.0 8.4 57 262-323 440-496 (507)
403 4eyt_A Telomerase associated p 67.2 28 0.00096 24.0 8.3 56 263-322 13-68 (129)
404 2g0c_A ATP-dependent RNA helic 55.4 16 0.00056 24.4 4.3 62 272-339 11-75 (76)
405 2cu1_A Mitogen-activated prote 50.8 64 0.0022 23.0 6.6 64 266-337 20-84 (103)
406 4e8u_A Putative uncharacterize 45.4 35 0.0012 27.2 5.2 55 263-317 13-80 (172)
407 2g0c_A ATP-dependent RNA helic 43.9 45 0.0015 22.1 5.1 58 67-129 12-74 (76)
408 4e8u_A Putative uncharacterize 36.0 47 0.0016 26.5 4.5 50 58-108 14-76 (172)
409 3j21_T 50S ribosomal protein L 25.5 1.2E+02 0.0041 20.9 4.7 55 265-319 25-82 (86)
410 3fry_A Probable copper-exporti 21.5 1.6E+02 0.0056 18.6 6.5 54 263-319 7-60 (73)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.3e-46 Score=339.15 Aligned_cols=238 Identities=21% Similarity=0.326 Sum_probs=216.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (415)
++++|||+|||.++|+++|+++|+.|| |.+|++ .+++|||||+|.+.++|.+|+..||+..+.|+.|.|.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 457899999999999999999999999 888888 5567899999999999999999999999999999999853
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
...+|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.++|..+.|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 336999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccC-CHHHHHHHHhhcCCeeeEE
Q 014955 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEE 293 (415)
Q Consensus 215 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-~~~~L~~~F~~~G~~~i~~ 293 (415)
|.++.++.... .....++|||+|||.++ ++++|+++|+.|| .|.+
T Consensus 169 v~~a~~~~~~~--------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~ 214 (284)
T 3smz_A 169 VHWTDAGQLTP--------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTF 214 (284)
T ss_dssp EEECCGGGCCT--------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSE
T ss_pred EEECCCCCCCc--------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEE
Confidence 99987642211 11234789999999995 9999999999999 8999
Q ss_pred EEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 294 i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
+++.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|.|++.+
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL---SLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEEECCSS
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC---ccCCeEEEEEEecCC
Confidence 998875 799999999999999999999999 999999999998764
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.5e-45 Score=334.20 Aligned_cols=243 Identities=15% Similarity=0.214 Sum_probs=208.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+.+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. ++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~- 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL- 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC-
Confidence 4567899999999999999999999999999999999865 36999999999999999994 9999999999999975
Q ss_pred ccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCC-CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
..++|||+|||..+++++|+++|+.|| .|.++.++.++. +.++|||||+|.+.++|.+|++.|+|..+.
T Consensus 116 ---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 116 ---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp ---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 356999999999999999999999999 999999998854 789999999999999999999999999999
Q ss_pred CeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCcc-CCHHHHHHHHhhcCC
Q 014955 210 SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGA 288 (415)
Q Consensus 210 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~L~~~F~~~G~ 288 (415)
|+.|.|.++.+....... .......++|||+|||.. +++++|+++|+.||
T Consensus 186 g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G- 236 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG- 236 (292)
T ss_dssp TEECEEEECCCC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS-
T ss_pred CcEEEEEECCCCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC-
Confidence 999999998764332111 012234478999999999 99999999999999
Q ss_pred eeeEEEEEeCC-------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 289 GVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 289 ~~i~~i~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
.|.+|++.++ +|+|||+|.+.++|.+|+ .|||. .++|++|+|.|++++
T Consensus 237 -~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~---~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 237 -SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS---LLGNREISVSLADKK 291 (292)
T ss_dssp -CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE---EETTEEEEEEECCCC
T ss_pred -CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC---EECCcEEEEEEecCC
Confidence 8999999653 689999999999999999 99999 999999999999865
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=234.73 Aligned_cols=162 Identities=41% Similarity=0.796 Sum_probs=151.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
|+|||+|||.++|+++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..+++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998776 35899999999999999999999999999999999987665
Q ss_pred CCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 014955 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (415)
Q Consensus 134 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (415)
. ....+..+|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 334556799999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEcc
Q 014955 214 RCNWAT 219 (415)
Q Consensus 214 ~v~~a~ 219 (415)
+|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.1e-33 Score=246.80 Aligned_cols=165 Identities=28% Similarity=0.530 Sum_probs=147.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.+.+||||+|||.++|+++|+++|++||.|.+|++++++. +|||||+|.+.++|.+|++.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4568999999999999999999999999999999998753 589999999999999999999999999999999987
Q ss_pred cccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
....... .....+|||+|||.++++++|+++|+.||.|.++++++|. +.++|||||+|.+.++|.+|++.|||..++
T Consensus 93 ~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 93 QRDPSLR-KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCTHHH-HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc-ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 6543221 2234689999999999999999999999999999999884 458999999999999999999999999999
Q ss_pred CeeEEEEEccCC
Q 014955 210 SRQIRCNWATKG 221 (415)
Q Consensus 210 g~~l~v~~a~~~ 221 (415)
|+.|+|.++.++
T Consensus 170 g~~i~V~~a~~~ 181 (213)
T 4f02_A 170 DRKVFVGRFKSR 181 (213)
T ss_dssp TEECEEEECCCH
T ss_pred CEEEEEEEcCCC
Confidence 999999998764
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.5e-33 Score=243.56 Aligned_cols=165 Identities=27% Similarity=0.433 Sum_probs=147.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+.++|||+|||.++++++|+++|+.||.|.++++++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC
Q 014955 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (415)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~ 298 (415)
........ ....+|||+|||+++++++|+++|+.|| .|.+|++.+
T Consensus 93 ~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~ 137 (213)
T 4f02_A 93 QRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVC 137 (213)
T ss_dssp CCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEE
T ss_pred cccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhcC--CeEEEEeec
Confidence 65321100 0114799999999999999999999999 899999876
Q ss_pred C----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 299 D----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 299 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
+ +|||||+|.+.++|.+|++.|||. .++|++|+|.|++.+
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~---~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFVGRFKSR 181 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEECCCH
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEcCCC
Confidence 4 789999999999999999999999 999999999998753
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-32 Score=230.15 Aligned_cols=161 Identities=27% Similarity=0.483 Sum_probs=149.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
++++|||+|||.++++++|+++|+.||.|.+|++++++. +|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468899999999999999999999999999999998753 5899999999999999999999999999999999987
Q ss_pred ccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
+... ....++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6543 3456799999999999999999999999999999999998889999999999999999999999999999977
Q ss_pred --eeEEEEEc
Q 014955 211 --RQIRCNWA 218 (415)
Q Consensus 211 --~~l~v~~a 218 (415)
++|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.3e-32 Score=240.98 Aligned_cols=168 Identities=23% Similarity=0.439 Sum_probs=152.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46789999999999999999999999999999998765 47999999999999999999999999999999998876
Q ss_pred ccCCCC--------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 014955 131 ASGQRE--------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (415)
Q Consensus 131 ~~~~~~--------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 202 (415)
...... .....++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543221 224557999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEccCCC
Q 014955 203 LTGKWLGSRQIRCNWATKGA 222 (415)
Q Consensus 203 l~~~~~~g~~l~v~~a~~~~ 222 (415)
|+|..++|+.|+|.|+..+.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998753
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-32 Score=234.64 Aligned_cols=170 Identities=19% Similarity=0.366 Sum_probs=147.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+.+.++|||+|||.++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45678999999999999999999999999999999998753 57999999999999999975 89999999999999
Q ss_pred ccccCCCC---CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 014955 129 AYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (415)
Q Consensus 129 ~~~~~~~~---~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (415)
+....... .....++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 86654322 234557999999999999999999999999999999999988999999999999999999999985 89
Q ss_pred ceeCCeeEEEEEccCCCCC
Q 014955 206 KWLGSRQIRCNWATKGAGN 224 (415)
Q Consensus 206 ~~~~g~~l~v~~a~~~~~~ 224 (415)
..++|+.|.|.++.++...
T Consensus 168 ~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CEETTEECEEEECC-----
T ss_pred cEECCEEEEEEecCChhHh
Confidence 9999999999999876543
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.7e-32 Score=226.91 Aligned_cols=160 Identities=33% Similarity=0.541 Sum_probs=147.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
+++|||+|||.++++++|+++|+.||.|.+|++++++. +|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999998763 48999999999999999999999999999999999875
Q ss_pred cCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 014955 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (415)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (415)
... .....+|||+|||..+++++|+++|+.||.|.++.+.+++.+|.++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 33457899999999999999999999999999999999988899999999999999999999999999999996
Q ss_pred e--EEEEEc
Q 014955 212 Q--IRCNWA 218 (415)
Q Consensus 212 ~--l~v~~a 218 (415)
. |+|.|+
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888875
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.1e-32 Score=239.56 Aligned_cols=176 Identities=22% Similarity=0.426 Sum_probs=148.5
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
......... .... ......++|||+|||.++++++|+++|++|| .|.+|++.++
T Consensus 107 ~~~~~~~~~-----~~~~-------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~ 160 (216)
T 2qfj_A 107 NIGQAQPII-----DQLA-------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLARD 160 (216)
T ss_dssp CCGGGHHHH-----HHHH-------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEEEC
T ss_pred Cccccchhh-----hhhh-------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEEec
Confidence 532110000 0000 0112336899999999999999999999999 8999999876
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (415)
+|+|||+|.+.++|.+|++.|||. .++|+.|+|.|++.+..+
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~---~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLF---DLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BCSSSBCEEEECSSCSST
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCC---EeCCcEEEEEEecCCCCC
Confidence 789999999999999999999999 999999999999876444
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.3e-31 Score=225.04 Aligned_cols=159 Identities=31% Similarity=0.488 Sum_probs=146.1
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
++++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.++|..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
+... ....++|||+|||..+++++|+++|++|| .|.++.+.++
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRD 124 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEEC
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEc
Confidence 5432 11236899999999999999999999999 8999998865
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWG 338 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a 338 (415)
+|+|||+|.+.++|.+|++.|||. .+.| ++|+|+||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNV---IPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCC---EecCCCeEEEEEeC
Confidence 489999999999999999999999 8977 99999986
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=223.76 Aligned_cols=160 Identities=24% Similarity=0.481 Sum_probs=144.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++|||+|||.++++++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.++|..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999885 5789999999999999999999999999999999999998654
Q ss_pred CCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC--
Q 014955 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (415)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-- 299 (415)
... .....++|||+|||.++++++|+++|+.|| .|.++.+.++
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCC
Confidence 321 122347899999999999999999999999 8999998755
Q ss_pred ----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 300 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
+|+|||+|.+.++|.+|+..|||. .++|++|+|+|++.
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCC---ccCCcEEEEEecCC
Confidence 689999999999999999999999 99999999999863
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=2.6e-31 Score=222.80 Aligned_cols=158 Identities=28% Similarity=0.464 Sum_probs=144.3
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-
Q 014955 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (415)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~- 299 (415)
.... ...++|||+|||..+++++|+++|++|| .|.++++.++
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecC
Confidence 3210 1225799999999999999999999999 8999998764
Q ss_pred -----cceEEEEeCCHHHHHHHHHHhcCCCccccCCee--eEEeeC
Q 014955 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKCSWG 338 (415)
Q Consensus 300 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~--l~v~~a 338 (415)
+|+|||+|.+.++|.+|++.|||. .++|+. |+|+||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCC---ccCCCccceEEEeC
Confidence 689999999999999999999999 899965 999886
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=2e-31 Score=224.76 Aligned_cols=158 Identities=23% Similarity=0.448 Sum_probs=144.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc----C-------CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 123 (415)
+.++|||+|||.++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+|+..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 56899999999999999999999999 6 666666644 4689999999999999999 89999999999
Q ss_pred eeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 014955 124 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (415)
Q Consensus 124 l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 203 (415)
|+|.++..... ....++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|
T Consensus 80 i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 80 LKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998765432 334679999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCeeEEEEEc
Q 014955 204 TGKWLGSRQIRCNWA 218 (415)
Q Consensus 204 ~~~~~~g~~l~v~~a 218 (415)
+|..++|+.|+|.|+
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999987
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=3.2e-31 Score=228.48 Aligned_cols=172 Identities=24% Similarity=0.414 Sum_probs=145.3
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+....++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999988999999999999999999999985 9999999999999
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
++........ +......++|||+|||+++++++|+++|+.|| .|.+|++
T Consensus 88 ~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i 136 (196)
T 1l3k_A 88 RAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEI 136 (196)
T ss_dssp ECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEEE
T ss_pred cccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEE
Confidence 9865432110 01122347899999999999999999999999 8999998
Q ss_pred eCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCCC
Q 014955 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 344 (415)
Q Consensus 297 ~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 344 (415)
.++ +|||||+|.+.++|.+|+.. ++. .++|+.|.|.|+..+...
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~---~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH---TVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC---EETTEECEEEECC-----
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCc---EECCEEEEEEecCChhHh
Confidence 865 68999999999999999986 788 899999999999876543
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.8e-31 Score=225.70 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=143.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC------CCceEEEEEecHHHHHHHHHHhCCcccc---CCcee
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIK 125 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~ 125 (415)
++++|||+|||+++++++|+++|++||.|.+|++++++ ++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999874 3579999999999999999999998776 56677
Q ss_pred eecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 014955 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (415)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 205 (415)
+.++.... ......++|||+|||.++++++|+++|+.||.|.++.+.+++ +|.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 76655443 334466799999999999999999999999999999999885 689999999999999999999999999
Q ss_pred ceeC---CeeEEEEEcc
Q 014955 206 KWLG---SRQIRCNWAT 219 (415)
Q Consensus 206 ~~~~---g~~l~v~~a~ 219 (415)
..+. +++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8775 4999999974
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=7.6e-31 Score=231.37 Aligned_cols=195 Identities=21% Similarity=0.335 Sum_probs=151.8
Q ss_pred CCCcceEEEcCCCc-ccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 138 TSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 138 ~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
..++++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999764 7899999999999999999999999999999999
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
++....................+....................++.++|||+|||.++++++|+++|+.|| ..|.+|++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC-CCeeEEEE
Confidence 99765332211111111111111111111111111111122345678999999999999999999999998 26889998
Q ss_pred e-CCcceEEEEeCCHHHHHHHHHHhcCCCccccC-CeeeEEeeCCCC
Q 014955 297 Q-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 341 (415)
Q Consensus 297 ~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~~ 341 (415)
. +++|+|||+|.+.++|.+|++.|||. .++ |++|+|+|++++
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 228 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTC---BSSSSCBCEEEECSSC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCC---ccCCCCeEEEEEecCC
Confidence 4 47999999999999999999999999 899 999999999864
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.4e-32 Score=226.25 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=146.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
++++|||+|||.++|+++|+++|+.||.|.+|++++++ ++|||||+|.+.++|.+|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 56899999999999999999999999999999998864 468999999999999999974 678999999998876
Q ss_pred ccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
+... .....+|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5432 2334689999999999999999999999999999999998889999999999999999999998 89999999
Q ss_pred eeEEEEEccCC
Q 014955 211 RQIRCNWATKG 221 (415)
Q Consensus 211 ~~l~v~~a~~~ 221 (415)
+.|+|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999765
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4.7e-31 Score=227.75 Aligned_cols=166 Identities=22% Similarity=0.421 Sum_probs=146.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc----C-------CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 123 (415)
.+++|||+|||.++++++|+++|+.| | .|.++.+ .+++|||||+|.+.++|.+|+ .||+..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 46899999999999999999999999 4 4555555 345689999999999999999 89999999999
Q ss_pred eeeecccccCCC-----------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEE
Q 014955 124 IKVNWAYASGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 186 (415)
Q Consensus 124 l~v~~~~~~~~~-----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~a 186 (415)
|+|.++...... ......++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a 159 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 159 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEE
Confidence 999988654221 112456899999999999999999999999999999999998899999999
Q ss_pred EEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014955 187 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 187 fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
||+|.+.++|.+|++.|+|..++|+.|+|.|+.++..
T Consensus 160 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 160 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999999987543
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.8e-31 Score=228.88 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=139.9
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 55 TCRSVYVGNIH-TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 55 ~~~~v~v~nlp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
++++|||+||| ..+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 46789999999 899999999999999999999998764 5899999999999999999999999999999999875322
Q ss_pred CCC----------------------------------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCc--eEEEEeecC
Q 014955 134 QRE----------------------------------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC--SDARVMWDQ 177 (415)
Q Consensus 134 ~~~----------------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v--~~~~~~~~~ 177 (415)
... ...+.++|||+|||.++++++|+++|+.||.| .+++++.++
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 100 01345689999999999999999999999999 899988764
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe----eEEEEEc
Q 014955 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR----QIRCNWA 218 (415)
Q Consensus 178 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~a 218 (415)
+.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 162 --~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 --SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp --SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 55679999999999999999999999999776 5666654
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=8e-31 Score=221.68 Aligned_cols=161 Identities=25% Similarity=0.390 Sum_probs=142.2
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCC--CcceEEEEEEcCHHHHHHHHHHhCCceeC---CeeEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 214 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 214 (415)
+.++|||+|||.++++++|+++|+.||.|.++++++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998776 89999999999999999999999998775 67788
Q ss_pred EEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEE
Q 014955 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (415)
Q Consensus 215 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i 294 (415)
+.++...... ....++|||+|||.++++++|+++|++|| .|.++
T Consensus 82 ~~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEEC 125 (175)
T ss_dssp EEECGGGCCS----------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEE
T ss_pred Eccccccccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEE
Confidence 8776543221 11236899999999999999999999999 89999
Q ss_pred EEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccC---CeeeEEeeCC
Q 014955 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKCSWGS 339 (415)
Q Consensus 295 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---g~~l~v~~a~ 339 (415)
++.++ +|+|||+|.+.++|.+|++.|||. .+. +++|+|+|+.
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA---QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS---CCCTTCSSCCEEEECC
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC---cccCCCCCCeEEEecC
Confidence 99876 789999999999999999999998 555 4999999974
No 22
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.1e-30 Score=225.43 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=150.4
Q ss_pred cceEEEcCCCc-ccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 141 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 141 ~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
+++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998763 7799999999999999999999999999999999987
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC-
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~- 298 (415)
...................+....................++.++|||+|||..+++++|+++|+.|| ..|.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 65432222111111111111111111111111112223345678999999999999999999999998 2688898854
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCCCccccC-CeeeEEeeCCCC
Q 014955 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 341 (415)
Q Consensus 299 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~~ 341 (415)
++|+|||+|.+.++|.+|+..|||. .++ |++|+|.|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS---CCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC---ccCCCCeEEEEeeccc
Confidence 6899999999999999999999999 899 999999998864
No 23
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.9e-30 Score=234.53 Aligned_cols=196 Identities=20% Similarity=0.313 Sum_probs=150.2
Q ss_pred CCCCcceEEEcCCCcccCHHHHH----HHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
+..++++|||+|||.++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999966 8999999999999884 6789999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCcccccccccc-----------------cccc-----------cCCC---------------------
Q 014955 213 IRCNWATKGAGNNEDKQSSDAKS-----------------VVEL-----------TNGS--------------------- 243 (415)
Q Consensus 213 l~v~~a~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~~--------------------- 243 (415)
|+|.|+..+.............. .... ..+.
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999866542100000000000 0000 0000
Q ss_pred ---C------cCC------------------cCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 244 ---S------EDG------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 244 ---~------~~~------------------~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
. ... ............++.++|||+|||.++++++|+++|++|| .|.+|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~ 239 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEE
Confidence 0 000 0000000112344568999999999999999999999999 9999999
Q ss_pred eCCc-ceEEEEeCCHHHHHHHHHHhcCCCccccC-CeeeEEeeCCC
Q 014955 297 QRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSK 340 (415)
Q Consensus 297 ~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v~~a~~ 340 (415)
.+++ |+|||+|.+.++|.+|++.|||. .++ |+.|+|+|+++
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGF---KITQNNAMKISFAKK 282 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCc---EeCCCCEEEEEEecC
Confidence 9886 99999999999999999999999 899 99999999874
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.1e-30 Score=223.40 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=141.1
Q ss_pred CcceEEEcCCC-cccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 140 GHFNIFVGDLS-PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 140 ~~~~l~v~nlp-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
++++|||+||| ..+++++|+++|+.||.|.+++++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 79999999999999999999999864 3689999999999999999999999999999999998
Q ss_pred cCCCCCCccc-ccccccc-cccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeee--EEE
Q 014955 219 TKGAGNNEDK-QSSDAKS-VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI--EEV 294 (415)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i--~~i 294 (415)
..+....... ....... ...+....................++.++|||+|||+++++++|+++|++|| .| .++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEE
Confidence 7543211000 0000000 0000000000000000001112235568999999999999999999999999 66 889
Q ss_pred EEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCe----eeEEeeC
Q 014955 295 RVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK----QMKCSWG 338 (415)
Q Consensus 295 ~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~----~l~v~~a 338 (415)
++..+ +|+|||+|.+.++|.+|+..|||. .+.|+ ++.|.|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~---~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHY---QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTC---EECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCC---CccCCCCCcceEEEec
Confidence 88765 489999999999999999999999 88876 5666654
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.9e-30 Score=227.68 Aligned_cols=163 Identities=20% Similarity=0.337 Sum_probs=145.3
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..++++|||+|||. ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 44678999999999 99999999999999999999999887 68999999999999999999999999999999998865
Q ss_pred cCCC--------------------------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCC-CceEEEEeecCC
Q 014955 132 SGQR--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQK 178 (415)
Q Consensus 132 ~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 178 (415)
.... ....+.++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-- 187 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 187 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--
Confidence 4110 0013368899999999999999999999999 9999998643
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEEEccCC
Q 014955 179 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (415)
Q Consensus 179 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~~~ 221 (415)
.+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|+.++
T Consensus 188 ---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3679999999999999999999999999 999999998763
No 26
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=5.5e-31 Score=220.94 Aligned_cols=159 Identities=25% Similarity=0.473 Sum_probs=142.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45799999999999999999999999999999999998899999999999999999999998 4678999999998875
Q ss_pred CCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC
Q 014955 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (415)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~ 299 (415)
++.. ....++|||+|||.++++++|+++|+.|| .|.++++.++
T Consensus 80 ~~~~-----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDE-----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLD 122 (167)
T ss_dssp CHHH-----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCS
T ss_pred chhh-----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEc
Confidence 4211 01126899999999999999999999999 8999998865
Q ss_pred ------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 300 ------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
+|+|||+|.+.++|.+|++ +++. .++|++|+|.|++++
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFI---DFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEE---CSSSSCEEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCE---EeCCeEEEEeecCCC
Confidence 5899999999999999998 8998 899999999998764
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.5e-30 Score=220.06 Aligned_cols=163 Identities=16% Similarity=0.337 Sum_probs=142.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEe---ecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
.+.+.++|||+|||.++++++|+++|+.||.+..+.+. ..+.+|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 35577899999999999999999999999976663222 2346799999999999999999 5999999999999999
Q ss_pred ccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
+...... .....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+
T Consensus 88 ~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDSK-KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSCS-TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCcccc-ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 8765432 34456799999999999999999999999988765 35789999999999999999999999999999
Q ss_pred CCeeEEEEEccCC
Q 014955 209 GSRQIRCNWATKG 221 (415)
Q Consensus 209 ~g~~l~v~~a~~~ 221 (415)
+|+.|+|.|+.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999999765
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.5e-30 Score=232.92 Aligned_cols=168 Identities=24% Similarity=0.373 Sum_probs=156.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..++|||+|||.++++++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 346899999999999999999999999999999988653 5899999999999999999999999999999999998
Q ss_pred ccCCCCCCCCcceEEEcCCCccc-CHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 131 ASGQREDTSGHFNIFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 131 ~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
...........++|||+|||.++ ++++|+++|+.||.|.++.+.++. +|.++|+|||+|.+.++|.+|++.|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88777777788899999999995 999999999999999999999885 7899999999999999999999999999999
Q ss_pred CeeEEEEEccCCCC
Q 014955 210 SRQIRCNWATKGAG 223 (415)
Q Consensus 210 g~~l~v~~a~~~~~ 223 (415)
|+.|+|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999987654
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.1e-29 Score=231.50 Aligned_cols=162 Identities=19% Similarity=0.393 Sum_probs=143.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhccCCcceEEEeecC-CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
..++++|||+|||.++++++|+ ++|+.||.|.+|++.++. .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4467899999999999999966 899999999999988643 56999999999999999999999999999999999
Q ss_pred cccccCCC------------------------------------------------------------------------
Q 014955 128 WAYASGQR------------------------------------------------------------------------ 135 (415)
Q Consensus 128 ~~~~~~~~------------------------------------------------------------------------ 135 (415)
|+......
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 88654320
Q ss_pred ------------------------------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCC
Q 014955 136 ------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 179 (415)
Q Consensus 136 ------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 179 (415)
....++++|||+|||..+++++|+++|+.||.|.++++..++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-- 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-- 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--
Confidence 122345789999999999999999999999999999998553
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEEEcc
Q 014955 180 GRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (415)
Q Consensus 180 ~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~ 219 (415)
+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999999999999 9999999985
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.9e-30 Score=221.33 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=143.5
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCC
Q 014955 56 CRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (415)
Q Consensus 56 ~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (415)
+++|||+|||. ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.++.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 57899999999 99999999999999999999999876 68999999999999999999999999999999998865421
Q ss_pred C--------------------------------CCCCCcceEEEcCCCcccCHHHHHHHhcCCC-CceEEEEeecCCCCC
Q 014955 135 R--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGR 181 (415)
Q Consensus 135 ~--------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~ 181 (415)
. ....++++|||+|||..+++++|+++|+.|| .|.++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----- 156 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 156 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----
Confidence 0 0113478899999999999999999999999 9999998754
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEEEccCC
Q 014955 182 SRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (415)
Q Consensus 182 ~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~~~ 221 (415)
.+|+|||+|.+.++|.+|++.|+|..++ |+.|+|.|+.++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2689999999999999999999999999 999999998753
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2e-30 Score=219.31 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=141.7
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+..+.++|||+|||.++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4456789999999999999999999999998877 344455678899999999999999999995 99999999999999
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEE-
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR- 295 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~- 295 (415)
++..+... .....++|||+|||.++++++|+++|+.|| .|..+.
T Consensus 87 ~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~~~ 131 (175)
T 1fje_B 87 KPKGRDSK---------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQ 131 (175)
T ss_dssp CCCCSSCS---------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEECS
T ss_pred cCCCcccc---------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEecC
Confidence 98764321 112347899999999999999999999999 777771
Q ss_pred EeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 296 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 296 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
..+++|+|||+|.+.++|.+|++.|||. .++|+.|+|+|++++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEE---EETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEecCCC
Confidence 1134899999999999999999999999 999999999999764
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.8e-29 Score=225.74 Aligned_cols=157 Identities=27% Similarity=0.412 Sum_probs=144.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..+|+..+.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 456789999999999999999999999999999999654 58999999999999999999999999999999999854
Q ss_pred CCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeC--
Q 014955 133 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLG-- 209 (415)
Q Consensus 133 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~-- 209 (415)
..+|||+|||..+++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..| ++..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 358999999999999999999999999999999999 58999999999999999999999999 455554
Q ss_pred -CeeEEEEEccCC
Q 014955 210 -SRQIRCNWATKG 221 (415)
Q Consensus 210 -g~~l~v~~a~~~ 221 (415)
+++|.|.++...
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 999999998764
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.6e-29 Score=231.76 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=146.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC-CcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..++|||+|||.++++++|+++|+.|| .|.+|++..++ .+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 468899999999999999999999999 99999998865 57999999999999999999999999999999999987
Q ss_pred ccCCCC----CCCCcceEEEcCCCcc-cCHHHHHHHhcCCCCceEEEEeecCC-CCCcceEEEEEEcCHHHHHHHHHHhC
Q 014955 131 ASGQRE----DTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLT 204 (415)
Q Consensus 131 ~~~~~~----~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~ 204 (415)
+..... .....++|||+|||.+ +++++|+++|+.||.|.++.++++.. ++.++|||||+|.+.++|.+|+ .|+
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 654432 3356689999999999 99999999999999999999998865 5899999999999999999999 999
Q ss_pred CceeCCeeEEEEEccCC
Q 014955 205 GKWLGSRQIRCNWATKG 221 (415)
Q Consensus 205 ~~~~~g~~l~v~~a~~~ 221 (415)
|..++|+.|+|.|+.++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999875
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=6e-29 Score=214.55 Aligned_cols=177 Identities=14% Similarity=0.242 Sum_probs=142.0
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCC-----------CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYP-----------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g-----------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
..++|||+|||.++++++|+++|+.|| .|.++.+ +.++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 357999999999999999999999994 4444443 466899999999999999999 7999999
Q ss_pred CCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCC
Q 014955 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (415)
Q Consensus 209 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~ 288 (415)
.|+.|+|.++.............. ...............++|||+|||..+++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G- 139 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG- 139 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS-
T ss_pred cCceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-
Confidence 999999999876533221110000 0000011112234568999999999999999999999999
Q ss_pred eeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCCCC
Q 014955 289 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 343 (415)
Q Consensus 289 ~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 343 (415)
.|.++++.++ +|+|||+|.+.++|.+|++.|||. .++|+.|+|.|++++..
T Consensus 140 -~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 140 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRASVGAK 196 (198)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC---EETTEECEEEESCCCCC
T ss_pred -CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEECCCCCC
Confidence 8999999866 789999999999999999999999 99999999999987543
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=5.4e-29 Score=209.79 Aligned_cols=153 Identities=17% Similarity=0.330 Sum_probs=135.3
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCC----C-------CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
+.++|||+|||.++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 56666554 45789999999999999999 7999999
Q ss_pred CCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCC
Q 014955 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (415)
Q Consensus 209 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~ 288 (415)
.|+.|+|.++...... ...++|||+|||..+++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFG- 119 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTS-
T ss_pred cCceeeecCCcccCCC-----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcC-
Confidence 9999999986543211 1136899999999999999999999999
Q ss_pred eeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 289 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 289 ~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.|.++++.++ +|+|||+|.+.++|.+|++.|||. .++|++|+|+|+.
T Consensus 120 -~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRAS 172 (172)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC---EETTEECEEEECC
T ss_pred -CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC---EECCeEEEEEeCC
Confidence 8999999776 689999999999999999999999 9999999999974
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.3e-27 Score=214.87 Aligned_cols=153 Identities=27% Similarity=0.419 Sum_probs=137.7
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||.++++++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..++|..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345667999999999999999999999999999999863 46899999999999999999999999999999999
Q ss_pred EccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEE
Q 014955 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (415)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~ 296 (415)
++.+ .++|||+|||+.+++++|+++|+.|| .|.+|.+
T Consensus 92 ~a~~-----------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i 128 (261)
T 3sde_A 92 FATH-----------------------------------------GAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVV 128 (261)
T ss_dssp ECCC-----------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEE
T ss_pred eccc-----------------------------------------CCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEe
Confidence 9863 15799999999999999999999999 8999998
Q ss_pred eCC-----cceEEEEeCCHHHHHHHHHHhc-CCCccccC---CeeeEEeeCCCC
Q 014955 297 QRD-----KGFGFVRYSTHAEAALAIQMGN-TTQSSYLF---GKQMKCSWGSKP 341 (415)
Q Consensus 297 ~~~-----~g~afV~f~~~~~A~~A~~~l~-g~~~~~~~---g~~l~v~~a~~~ 341 (415)
..+ +|+|||+|.+.++|.+|+..|| +. .+. +++|.|.|+...
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~---~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 129 VVDDRGRATGKGFVEFAAKPPARKALERCGDGA---FLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC---EESSSSCCBCEEEECCCE
T ss_pred eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe---EEecCCCceEEEeecccc
Confidence 865 7999999999999999999995 44 444 999999998754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=4.3e-22 Score=164.81 Aligned_cols=139 Identities=23% Similarity=0.289 Sum_probs=111.4
Q ss_pred eEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceee-------ecccc---cCCCCCCCCcceEEEcCCCcc
Q 014955 85 GCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV-------NWAYA---SGQREDTSGHFNIFVGDLSPE 152 (415)
Q Consensus 85 ~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v-------~~~~~---~~~~~~~~~~~~l~v~nlp~~ 152 (415)
.++++.++ .+|||||+|.+.++|++|+..+++....+..+.+ ..... ...........+|||+|||.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 34555554 4699999999999999999887754332222222 11111 112223345689999999999
Q ss_pred cCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014955 153 VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 153 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++..
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999987543
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.5e-21 Score=159.90 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=112.5
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHh-CCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCC
Q 014955 179 TGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 257 (415)
Q Consensus 179 ~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (415)
....+|+++|+|.+.++|++|++.+ +|..++| .+.+.++..+....... ..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~ 68 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-------------------HHHHHHMHRD 68 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-------------------SSCCCCSCSS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-------------------cccccccccc
Confidence 3477899999999999999999999 9999999 99998775422110000 0000011122
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
.....++|||+|||+++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|+..|||. .++|++|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR---TLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS---CSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEE
Confidence 334458999999999999999999999999 9999999987 999999999999999999999999 8999999999
Q ss_pred eCCCC
Q 014955 337 WGSKP 341 (415)
Q Consensus 337 ~a~~~ 341 (415)
|++.+
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98764
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=8.7e-21 Score=156.93 Aligned_cols=146 Identities=19% Similarity=0.260 Sum_probs=106.5
Q ss_pred EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcC
Q 014955 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKE 249 (415)
Q Consensus 170 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (415)
.+.+..+.. +++||+||+|.+.++|++|++.+++....+..+.+........ . . ..
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~----~----------~--------~~ 57 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT----V----------T--------EG 57 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE----E----------E--------CC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc----c----------c--------cc
Confidence 456666643 7899999999999999999988775432222222221100000 0 0 00
Q ss_pred CCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCC
Q 014955 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
.............++|||+|||+++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00001111233457999999999999999999999999 8999999865 689999999999999999999999
Q ss_pred CccccCCeeeEEeeCCCCCCC
Q 014955 324 QSSYLFGKQMKCSWGSKPTPP 344 (415)
Q Consensus 324 ~~~~~~g~~l~v~~a~~~~~~ 344 (415)
.++|++|+|.|++.+.+.
T Consensus 136 ---~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 136 ---VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp ---ESSSSEEEEEEECCSSCC
T ss_pred ---EECCeEEEEEECCCCCCC
Confidence 999999999999876443
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.8e-21 Score=150.51 Aligned_cols=109 Identities=26% Similarity=0.501 Sum_probs=74.8
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
..+|||+|||.++++++|+++|+.||.|.+++|++++ +.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999885 45899999999999999999999999999999999999876
Q ss_pred CCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHH
Q 014955 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278 (415)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 278 (415)
+........ ......++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~---------------------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELG---------------------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------------------------
T ss_pred ccccccccc---------------------------cccCCCCceEeCCCCCCccccc
Confidence 533211110 0112235799999999999863
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1.8e-21 Score=151.60 Aligned_cols=103 Identities=23% Similarity=0.470 Sum_probs=73.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC--CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
...+|||+|||+++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.|++..+.|+.|+|.++..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 346799999999999999999999999999999998764 589999999999999999999999999999999998765
Q ss_pred CCCCC-----CCCcceEEEcCCCcccCHHH
Q 014955 133 GQRED-----TSGHFNIFVGDLSPEVTDAT 157 (415)
Q Consensus 133 ~~~~~-----~~~~~~l~v~nlp~~~~~~~ 157 (415)
..... .....+|||+|||+++|++-
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 43221 23345799999999998763
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=3.3e-21 Score=157.92 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=110.2
Q ss_pred CCceEEEEEecHHHHHHHHHHh-CCccccCCceeeeccccc-------------CCCCCCCCcceEEEcCCCcccCHHHH
Q 014955 93 KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAYAS-------------GQREDTSGHFNIFVGDLSPEVTDATL 158 (415)
Q Consensus 93 ~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~nlp~~~~~~~l 158 (415)
-.|+++|+|.+.++|++|++.+ |+..+.| .+.+.++... .........++|||+|||.++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3689999999999999999999 9999999 9999987652 12333456789999999999999999
Q ss_pred HHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 159 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 159 ~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
+++|+.||.|.+++++++ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|+|+.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999865 5889999999999999999999999999999999998765
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=137.83 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=77.1
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.++|||+|||.++++++|+++|+.||.|.++++++|+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=133.20 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=73.8
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcC--CCccccCCeeeEEee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKCSW 337 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l~v~~ 337 (415)
++.++|||+|||+++++++|+++|++|| .|.+|++.++||||||+|.+.++|.+|++.|++ . .+.|++|+|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCC---EETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEEEE
Confidence 3457999999999999999999999999 999999999999999999999999999998864 6 79999999999
Q ss_pred CCCCCCCC
Q 014955 338 GSKPTPPG 345 (415)
Q Consensus 338 a~~~~~~~ 345 (415)
++.+....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98765543
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=130.59 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 257 ~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
...+++++|||+|||+++++++|+++|++|| .|.++++.++||+|||+|.+.++|.+|++.|++.+. .+.|++|+|.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~-~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQI-YIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCE-EETTEEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCc-eeCCcEEEEE
Confidence 3455678999999999999999999999999 999999999999999999999999999999998721 3789999999
Q ss_pred eCCCC
Q 014955 337 WGSKP 341 (415)
Q Consensus 337 ~a~~~ 341 (415)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99865
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=133.98 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=78.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+.++|||+|||.++++++|+++|++||.|.++.+++|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 014955 219 TKG 221 (415)
Q Consensus 219 ~~~ 221 (415)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 47
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=4e-19 Score=138.55 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
+.++++|||+|||.++++++|+++|+.||.|.+|.+..+. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3456899999999999999999999999999999998765 468999999999999999999999999999999999876
Q ss_pred cCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCC
Q 014955 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (415)
Q Consensus 132 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~ 167 (415)
.... .+++...++++|.++|++||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 5432 577888899999999999975
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=132.83 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=76.5
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCC-CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC-CceeCCeeEEEEEc
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWA 218 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~a 218 (415)
+++|||+|||.++++++|+++|+.|| .|.++++++|+.++.++|||||+|.+.++|.+|++.++ +..++|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87644
No 49
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.6e-19 Score=143.25 Aligned_cols=125 Identities=25% Similarity=0.382 Sum_probs=82.9
Q ss_pred ceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEe
Q 014955 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 95 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (415)
.++|.+|.+...+..|+..+++....|+. ...+..+ ..+..+.++|||+|||.++++++|+++|+.||.|.++.++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp -------------------------------CCSCCS---CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 36788889999999999999887666543 2223222 2334456799999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014955 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
+++.++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+..+..
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9988999999999999999999999999999999999999999987543
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=129.84 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=72.1
Q ss_pred cceeEEEccCCc-cCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 261 QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 261 ~~~~l~v~nlp~-~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
+.++|||+|||+ ++++++|+++|++|| .|.+|.+.+++|||||+|.+.++|..|++.||+... .+.|++|+|.|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA-LVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS--CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCC-EETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCc-eECCcEEEEEECC
Confidence 457999999999 999999999999999 999999999999999999999999999999987510 5999999999998
Q ss_pred CCC
Q 014955 340 KPT 342 (415)
Q Consensus 340 ~~~ 342 (415)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 51
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-18 Score=128.64 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
..++.++|||+|||+++++++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|++... .+.|++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~i~Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPV-YIAGQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC-BSSSSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEEEE
Confidence 445668999999999999999999999999 999999999999999999999999999999876511 59999999999
Q ss_pred CCCCCC
Q 014955 338 GSKPTP 343 (415)
Q Consensus 338 a~~~~~ 343 (415)
++.+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 986543
No 52
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=130.53 Aligned_cols=75 Identities=36% Similarity=0.490 Sum_probs=69.8
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
.+++|||+|||+++|+++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL---RLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC---EECCEEEE
Confidence 346899999999999999999999999 8999999764 689999999999999999999999 99999999
Q ss_pred EeeCCC
Q 014955 335 CSWGSK 340 (415)
Q Consensus 335 v~~a~~ 340 (415)
|+|+++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999974
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=129.67 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC--ccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (415)
+.+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..+.|++|+|.|+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 346788999999999999999999999999999999886 58999999999999999998864 68999999999997
Q ss_pred ccCCC
Q 014955 131 ASGQR 135 (415)
Q Consensus 131 ~~~~~ 135 (415)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 66543
No 54
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=133.09 Aligned_cols=93 Identities=27% Similarity=0.436 Sum_probs=82.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCC
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (415)
++|||+|||.++++++|+++|++||.|.+|++..+ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999888 67899999999999999999999999999999999997765322
Q ss_pred C-------CCCcceEEEcCCC
Q 014955 137 D-------TSGHFNIFVGDLS 150 (415)
Q Consensus 137 ~-------~~~~~~l~v~nlp 150 (415)
. .....+|||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1 1235689999986
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=129.09 Aligned_cols=82 Identities=22% Similarity=0.416 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCC--ceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc----eeCCee
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS--CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGSRQ 212 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~~ 212 (415)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.++++||||||+|.+.++|.+|++.|+|. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34468999999999999999999999995 679999999999999999999999999999999999986 589999
Q ss_pred EEEEEccC
Q 014955 213 IRCNWATK 220 (415)
Q Consensus 213 l~v~~a~~ 220 (415)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=6.3e-18 Score=123.45 Aligned_cols=80 Identities=51% Similarity=0.890 Sum_probs=77.3
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
.+|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999865
No 57
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=126.81 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhc--CCCccccCCeeeEE
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKC 335 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g~~l~v 335 (415)
..++.++|||+|||+++++++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|+ +. .+.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~---~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG--KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP---HLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC---EETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc---eECCcEEEE
Confidence 344568999999999999999999999999 99999999999999999999999999999875 55 799999999
Q ss_pred eeCCCCCCC
Q 014955 336 SWGSKPTPP 344 (415)
Q Consensus 336 ~~a~~~~~~ 344 (415)
.|++.....
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999865543
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.3e-17 Score=129.95 Aligned_cols=90 Identities=53% Similarity=0.928 Sum_probs=83.4
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
..+..+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 014955 215 CNWATKGAGN 224 (415)
Q Consensus 215 v~~a~~~~~~ 224 (415)
|.|+..+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 59
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=131.04 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcC--CCccccCCeeeEE
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKC 335 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~g~~l~v 335 (415)
..++.++|||+|||+++++++|+++|++|| .|.+|++.++||||||+|.+.++|.+|++.|++ . .+.|++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG--~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~---~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTS--CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCC---CBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCc---eECCeEEEE
Confidence 344568999999999999999999999999 999999999999999999999999999999874 5 799999999
Q ss_pred eeCCCCCCC
Q 014955 336 SWGSKPTPP 344 (415)
Q Consensus 336 ~~a~~~~~~ 344 (415)
.|++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876544
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.2e-18 Score=127.98 Aligned_cols=89 Identities=27% Similarity=0.439 Sum_probs=82.6
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
.+..+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 014955 216 NWATKGAGN 224 (415)
Q Consensus 216 ~~a~~~~~~ 224 (415)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 61
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=4.2e-18 Score=121.69 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=70.1
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..-|||+||++.+|+++|+++|.+|| .|.++++..+||||||+|.+.++|.+|++.||+. .++|++|+|.+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~---~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYLNQGIALCKYTTREEANKAQMALNNC---VLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE---EETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC---EECCcEEEEEECC
Confidence 35699999999999999999999999 9999999999999999999999999999999999 9999999999984
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=125.08 Aligned_cols=83 Identities=55% Similarity=0.976 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..++|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 014955 219 TKG 221 (415)
Q Consensus 219 ~~~ 221 (415)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=126.36 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.9e-18 Score=140.64 Aligned_cols=125 Identities=16% Similarity=0.286 Sum_probs=80.3
Q ss_pred EEEecHHHHHHHHHHhCCcccc--CCceeeeccccc-----------------CCCCCCCCcceEEEcCCCcccCHHHHH
Q 014955 99 IHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYAS-----------------GQREDTSGHFNIFVGDLSPEVTDATLF 159 (415)
Q Consensus 99 V~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~~~~~l~ 159 (415)
.+|.+.++|..++..+++.... |+.....+.... .......+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999998887665 555554432110 112223456789999999999999999
Q ss_pred HHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCC
Q 014955 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (415)
Q Consensus 160 ~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 223 (415)
++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999977544
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=125.53 Aligned_cols=86 Identities=34% Similarity=0.454 Sum_probs=80.5
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
..+..+.++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccC
Q 014955 215 CNWATK 220 (415)
Q Consensus 215 v~~a~~ 220 (415)
|+|+..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 66
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.5e-17 Score=129.55 Aligned_cols=89 Identities=27% Similarity=0.465 Sum_probs=82.2
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
.....+.++|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445668999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 014955 215 CNWATKGAG 223 (415)
Q Consensus 215 v~~a~~~~~ 223 (415)
|+|+.++..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987654
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=8.9e-18 Score=126.27 Aligned_cols=83 Identities=27% Similarity=0.590 Sum_probs=78.8
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
++++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 014955 220 KGA 222 (415)
Q Consensus 220 ~~~ 222 (415)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 68
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=125.24 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=80.3
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++ +++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4566899999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred ccCCCCC
Q 014955 218 ATKGAGN 224 (415)
Q Consensus 218 a~~~~~~ 224 (415)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=124.79 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=80.1
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+.++|||+|||..+++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=8.5e-18 Score=123.37 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 014955 218 AT 219 (415)
Q Consensus 218 a~ 219 (415)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=127.26 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=70.3
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCc-cccCCeee
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQS-SYLFGKQM 333 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~~g~~l 333 (415)
.-++|||+|||+++|+++|+++|++||...+.+|++.++ ||||||+|.+.++|.+|++.|||... ..++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 347899999999999999999999999656788988765 78999999999999999999999621 13899999
Q ss_pred EEeeCCC
Q 014955 334 KCSWGSK 340 (415)
Q Consensus 334 ~v~~a~~ 340 (415)
.|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=125.14 Aligned_cols=86 Identities=17% Similarity=0.361 Sum_probs=79.9
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||.++++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987543
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=126.40 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcc--ccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~ 130 (415)
..++++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++.. +.|++|+|.|+.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 446789999999999999999999999999999999864 4799999999999999999999875 779999999986
Q ss_pred cc
Q 014955 131 AS 132 (415)
Q Consensus 131 ~~ 132 (415)
.+
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=125.79 Aligned_cols=86 Identities=31% Similarity=0.654 Sum_probs=80.4
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEE-EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
.+.++|||+|||.++++++|+++|+.||.|.++ .+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014955 218 ATKGAGN 224 (415)
Q Consensus 218 a~~~~~~ 224 (415)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=128.22 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=73.4
Q ss_pred CCcceeEEEccCCcc-CCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 259 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~-~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
..+.++|||+|||++ +++++|+++|++|| .|.+|.+.++||||||+|.+.++|..|++.|++... .+.|++|+|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKAL-WFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCC-CSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEEEE
Confidence 345689999999998 99999999999999 999999999999999999999999999998875310 69999999999
Q ss_pred CCCCCCC
Q 014955 338 GSKPTPP 344 (415)
Q Consensus 338 a~~~~~~ 344 (415)
++.....
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9865543
No 76
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=126.36 Aligned_cols=87 Identities=32% Similarity=0.463 Sum_probs=81.3
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014955 218 ATKGAGN 224 (415)
Q Consensus 218 a~~~~~~ 224 (415)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 77
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=127.70 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCc--cccCCceeeec
Q 014955 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNW 128 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 128 (415)
...++++|||+|||+ +++++||+++|++||.|.+|++++++ |||||+|.+.++|..|++.||+. .+.|++|+|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 345678999999999 99999999999999999999998765 79999999999999999998864 49999999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 976543
No 78
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=127.34 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccC-CcceEEEeecC----CCceEEEEEecHHHHHHHHHHh-CCccccCCceeeecc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWA 129 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 129 (415)
+.+|||+|||.++|+++|+++|+.|| .|.+|++++++ ++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36799999999999999999999999 79999998865 4689999999999999999877 456799999999999
Q ss_pred cccCCC
Q 014955 130 YASGQR 135 (415)
Q Consensus 130 ~~~~~~ 135 (415)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=126.90 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=82.0
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
.+....++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
.++..+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 80
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=125.28 Aligned_cols=81 Identities=31% Similarity=0.538 Sum_probs=75.3
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
.++.++|||+|||..+++++|+++|++|| .|.+|++.+++|||||+|.+.++|.+|++.|||. .++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM---PLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC---CBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---EeCCceEEEEEc
Confidence 34557999999999999999999999999 8999999999999999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 014955 339 SKPTPP 344 (415)
Q Consensus 339 ~~~~~~ 344 (415)
+.+...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 876543
No 81
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=127.20 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=81.2
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+..+.++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987543
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.2e-17 Score=130.76 Aligned_cols=85 Identities=31% Similarity=0.498 Sum_probs=79.2
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 135 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
..+..+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcc
Q 014955 215 CNWAT 219 (415)
Q Consensus 215 v~~a~ 219 (415)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=123.91 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ecc
Q 014955 217 WAT 219 (415)
Q Consensus 217 ~a~ 219 (415)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 84
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=123.44 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccC--CeeeEEe
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKCS 336 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~--g~~l~v~ 336 (415)
.++.++|||+|||.++++++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|++.||+. .+. |++|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF---PLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC---BCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC---EeCCCCcEEEEE
Confidence 34457899999999999999999999999 8999999999999999999999999999999999 899 9999999
Q ss_pred eCCCCCC
Q 014955 337 WGSKPTP 343 (415)
Q Consensus 337 ~a~~~~~ 343 (415)
|++.+..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 85
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=8.5e-18 Score=120.13 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45699999999999999999999999999999976 5699999999999999999999999999999999876
No 86
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=125.58 Aligned_cols=84 Identities=37% Similarity=0.804 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++ ++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4567899999999999999999999999999999999865 35899999999999999999999999999999999998
Q ss_pred ccCCCC
Q 014955 131 ASGQRE 136 (415)
Q Consensus 131 ~~~~~~ 136 (415)
.+....
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 765443
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=127.31 Aligned_cols=86 Identities=28% Similarity=0.567 Sum_probs=80.8
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
....+.++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCC
Q 014955 216 NWATKG 221 (415)
Q Consensus 216 ~~a~~~ 221 (415)
+++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 88
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-17 Score=126.19 Aligned_cols=83 Identities=30% Similarity=0.432 Sum_probs=74.6
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
..+.++|||+|||+++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAG--VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ---LLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC---EeCCCEE
Confidence 34457999999999999999999999999 8999999876 789999999999999999999999 9999999
Q ss_pred EEeeCCCCCCCCC
Q 014955 334 KCSWGSKPTPPGT 346 (415)
Q Consensus 334 ~v~~a~~~~~~~~ 346 (415)
+|.|++...+...
T Consensus 87 ~v~~a~~~~~~~~ 99 (114)
T 2do0_A 87 HVKMDERALPKGD 99 (114)
T ss_dssp EEEECSCCCCCSC
T ss_pred EEEEcccCCCCCC
Confidence 9999986555443
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.53 Aligned_cols=85 Identities=22% Similarity=0.444 Sum_probs=80.0
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 014955 218 ATKGA 222 (415)
Q Consensus 218 a~~~~ 222 (415)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87653
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=125.85 Aligned_cols=83 Identities=19% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-CceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 45678999999999999999999999999999999977654 78999999999999999999999999999999999977
Q ss_pred cCCC
Q 014955 132 SGQR 135 (415)
Q Consensus 132 ~~~~ 135 (415)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4a_A 99 GRGT 102 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=124.95 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC--CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345678999999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred cccCCC
Q 014955 130 YASGQR 135 (415)
Q Consensus 130 ~~~~~~ 135 (415)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 776543
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.7e-18 Score=127.35 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=72.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCC--CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.+|||+|||.++++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 014955 220 KGA 222 (415)
Q Consensus 220 ~~~ 222 (415)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=124.91 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
......++|||+|||.++++++|+++|+.||.|.+ +++..++.+++++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456689999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeEEEEEcc
Q 014955 208 LGSRQIRCNWAT 219 (415)
Q Consensus 208 ~~g~~l~v~~a~ 219 (415)
+.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 94
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=7.5e-17 Score=125.56 Aligned_cols=82 Identities=34% Similarity=0.652 Sum_probs=74.4
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
....++|||+|||..+++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQ 86 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC---EETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCEE
Confidence 34558999999999999999999999999 8999999876 689999999999999999999999 999999
Q ss_pred eEEeeCCCCCCCC
Q 014955 333 MKCSWGSKPTPPG 345 (415)
Q Consensus 333 l~v~~a~~~~~~~ 345 (415)
|+|.|++.+....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 95
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=121.83 Aligned_cols=76 Identities=29% Similarity=0.598 Sum_probs=71.7
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHh-cCCCccccCCeeeEEee
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~g~~l~v~~ 337 (415)
....++|||+|||.++++++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|++.| ++. .++|++|+|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL---IVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC---EETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe---eECCCEEEEEe
Confidence 34557899999999999999999999999 8999999999999999999999999999998 999 99999999999
Q ss_pred CC
Q 014955 338 GS 339 (415)
Q Consensus 338 a~ 339 (415)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 96
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3.7e-17 Score=125.12 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=80.0
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC---eeE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS---RQI 213 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l 213 (415)
.....++|||+|||..+++++|+++|+.||.|.++.+.+++ ++.++|||||+|.+.++|.+|++.|+|..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999996 78999999999999999999999999999988 999
Q ss_pred EEEEccCCCCC
Q 014955 214 RCNWATKGAGN 224 (415)
Q Consensus 214 ~v~~a~~~~~~ 224 (415)
+|.|+..+...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 97
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=123.95 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=74.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
.....++|||+|||.++++++|+++|+.||.|. +.++.++.+|||||+|.+.++|.+|+..||+..+.|+.|+|.++.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345578999999999999999999999999997 7888888889999999999999999999999999999999999876
Q ss_pred cC
Q 014955 132 SG 133 (415)
Q Consensus 132 ~~ 133 (415)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=125.80 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeec--CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 456788999999999999999999999999999999987 446899999999999999999999999999999999998
Q ss_pred ccCCCC
Q 014955 131 ASGQRE 136 (415)
Q Consensus 131 ~~~~~~ 136 (415)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 766543
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=128.74 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC--CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..+.++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4567889999999999999999999999999999998875 36899999999999999999999999999999999986
Q ss_pred cc
Q 014955 131 AS 132 (415)
Q Consensus 131 ~~ 132 (415)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=123.88 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHh--CCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~ 130 (415)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 346789999999999999999999999999999998876 589999999999999999976 4677999999999997
Q ss_pred ccCCC
Q 014955 131 ASGQR 135 (415)
Q Consensus 131 ~~~~~ 135 (415)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 66543
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=126.54 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=81.7
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC------CceeC
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT------GKWLG 209 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~ 209 (415)
....+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeeEEEEEccCCCC
Q 014955 210 SRQIRCNWATKGAG 223 (415)
Q Consensus 210 g~~l~v~~a~~~~~ 223 (415)
|+.|+|.|+.++..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987644
No 102
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=8.4e-18 Score=130.96 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=92.4
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||..+++++|+++|+.||.|.++.+.++ +.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999865 45699999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeEEEccCCccCCHHHHHHHHhhcC
Q 014955 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287 (415)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G 287 (415)
+.++... .+++...++++|.++|++||
T Consensus 82 a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 82 YNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp CCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred ecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 8653211 46778889999999999998
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=5.9e-18 Score=128.07 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred CcceEEEcCCCc------ccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-ee
Q 014955 140 GHFNIFVGDLSP------EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-RQ 212 (415)
Q Consensus 140 ~~~~l~v~nlp~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~ 212 (415)
.+++|||+|||. ++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEEccC
Q 014955 213 IRCNWATK 220 (415)
Q Consensus 213 l~v~~a~~ 220 (415)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 104
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=5.7e-19 Score=142.60 Aligned_cols=83 Identities=34% Similarity=0.560 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999998764 68999999999999999999999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.....+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 105
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=127.32 Aligned_cols=85 Identities=32% Similarity=0.485 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|++|++.|+|..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455799999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976543
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=125.00 Aligned_cols=83 Identities=34% Similarity=0.622 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999999999999999999999999998875 358999999999999999999999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+..+...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9776543
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=128.03 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC--ccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (415)
..++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..+.|++|+|.++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 446789999999999999999999999999999999887 48999999999999999998874 57999999999997
Q ss_pred ccCCCC
Q 014955 131 ASGQRE 136 (415)
Q Consensus 131 ~~~~~~ 136 (415)
.+....
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765443
No 108
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=125.23 Aligned_cols=88 Identities=27% Similarity=0.430 Sum_probs=81.4
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeec-CCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeCCeeE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQI 213 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l 213 (415)
......++|||+|||..+++++|+++|+.||.|.++.++++ +.++.++|||||+|.+.++|.+|++.| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999988 778999999999999999999999999 9999999999
Q ss_pred EEEEccCCCC
Q 014955 214 RCNWATKGAG 223 (415)
Q Consensus 214 ~v~~a~~~~~ 223 (415)
+|.|+.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987644
No 109
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=122.75 Aligned_cols=83 Identities=30% Similarity=0.558 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+++++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456889999999999999999999999999999999875 3689999999999999999999999999999999999
Q ss_pred cccCCCC
Q 014955 130 YASGQRE 136 (415)
Q Consensus 130 ~~~~~~~ 136 (415)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8765543
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.9e-17 Score=131.13 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=75.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
.+.+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567889999999999999999999999999999998864 46899999999999999999999999999999999
Q ss_pred cccccC
Q 014955 128 WAYASG 133 (415)
Q Consensus 128 ~~~~~~ 133 (415)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987654
No 111
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=125.89 Aligned_cols=86 Identities=41% Similarity=0.596 Sum_probs=80.8
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.9e-17 Score=126.83 Aligned_cols=86 Identities=20% Similarity=0.400 Sum_probs=80.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||..+++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCC
Q 014955 217 WATKGA 222 (415)
Q Consensus 217 ~a~~~~ 222 (415)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=125.30 Aligned_cols=79 Identities=39% Similarity=0.637 Sum_probs=74.4
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
..++|||+|||.++++++|+++|+.|| .|.+|++.+++|||||+|.+.++|.+|+..|||. .++|++|+|.|++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG--QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT---TIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC---EETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC---EECCcEEEEEecCC
Confidence 447999999999999999999999999 9999999999999999999999999999999999 99999999999987
Q ss_pred CCCC
Q 014955 341 PTPP 344 (415)
Q Consensus 341 ~~~~ 344 (415)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 114
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=123.90 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=78.4
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCC---CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
.+.++|||+|||.++++++|+++|+.||.|.++.+.+++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567999999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
.++..+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99977544
No 115
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=7e-17 Score=123.02 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=79.0
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||.++++++|+++|+.|| |.++.+++++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345668999999999999999999999997 999999999889999999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987544
No 116
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=123.84 Aligned_cols=87 Identities=26% Similarity=0.527 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
......++|||+|||.++++++|+++|+.||.|.++.+..+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 014955 216 NWATKGAGN 224 (415)
Q Consensus 216 ~~a~~~~~~ 224 (415)
.|+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 117
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=123.96 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCc--cccCCceeeecccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNWAYA 131 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~~ 131 (415)
.++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|++|+|.|+..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 45689999999999999999999999999999998875 589999999999999999988654 58999999999976
Q ss_pred cCC
Q 014955 132 SGQ 134 (415)
Q Consensus 132 ~~~ 134 (415)
+..
T Consensus 91 ~~~ 93 (104)
T 1wex_A 91 KRI 93 (104)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 118
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=124.03 Aligned_cols=83 Identities=24% Similarity=0.464 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999998865 368999999999999999999999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+..+...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 119
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=126.06 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=81.6
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCce--------EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 207 (415)
.+....++|||+|||.++++++|+++|+.||.|. .+++..++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456678999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeeEEEEEccCCCC
Q 014955 208 LGSRQIRCNWATKGAG 223 (415)
Q Consensus 208 ~~g~~l~v~~a~~~~~ 223 (415)
+.|+.|+|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 120
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=121.90 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=72.6
Q ss_pred cceeEEEccCCccCCHHHHH----HHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 261 QYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~----~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
..++|||+|||+++++++|+ ++|++|| .|.+|++..+ +|||||+|.+.++|.+|++.|||. .++|++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~---~~~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY---KIGSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 44789999999999999999 9999999 9999999976 899999999999999999999999 9999999
Q ss_pred EEeeCCCCCC
Q 014955 334 KCSWGSKPTP 343 (415)
Q Consensus 334 ~v~~a~~~~~ 343 (415)
+|.|++....
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999986544
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=122.73 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|++ +|+..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999998864 46899999999999999998 999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 122
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.1e-17 Score=125.72 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee---CCee
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQ 212 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 212 (415)
....+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999988999999999999999999999999999987 8999
Q ss_pred EEEEEccCCCC
Q 014955 213 IRCNWATKGAG 223 (415)
Q Consensus 213 l~v~~a~~~~~ 223 (415)
|+|.++..+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987544
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.5e-17 Score=127.39 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=72.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..++|||+|||+++++++|+++|+.|| .|..+.+..++++|||||+|.+.++|++|++.|||..+.|+.|+|.++..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 457899999999999999999999999 899999976677899999999999999999999999999999999988654
No 124
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=2e-17 Score=131.04 Aligned_cols=87 Identities=32% Similarity=0.453 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
....+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 014955 216 NWATKGA 222 (415)
Q Consensus 216 ~~a~~~~ 222 (415)
+|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987653
No 125
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=124.18 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCce-EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCee----
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ---- 212 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~---- 212 (415)
....++|||+|||.++++++|+++|+.||.|. ++++++++.++.++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 014955 213 IRCNWATKGA 222 (415)
Q Consensus 213 l~v~~a~~~~ 222 (415)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 126
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=121.79 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.....++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTS--CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEE
Confidence 344558999999999999999999999999 8999999876 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014955 334 KCSWGSKPTPP 344 (415)
Q Consensus 334 ~v~~a~~~~~~ 344 (415)
+|.|++.+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=120.31 Aligned_cols=80 Identities=29% Similarity=0.493 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
+.+.++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|.+|+..||+..+.|+.|+|.++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 3467899999999999999999999999999999997 479999999999999999999999999999999999876
Q ss_pred CCCC
Q 014955 133 GQRE 136 (415)
Q Consensus 133 ~~~~ 136 (415)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 128
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=4e-17 Score=127.72 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
...+.++|||+|||.++++++|+++|++||.|.+|+++.++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999998874 36899999999999999999999999999999999
Q ss_pred cc
Q 014955 128 WA 129 (415)
Q Consensus 128 ~~ 129 (415)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 129
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=124.37 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467899999999999999999999999999999998865 368999999999999999999999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9866543
No 130
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=4.1e-18 Score=134.65 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=77.4
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred CCC
Q 014955 220 KGA 222 (415)
Q Consensus 220 ~~~ 222 (415)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 131
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=121.77 Aligned_cols=81 Identities=28% Similarity=0.556 Sum_probs=74.1
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
....++|||+|||+.+++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR---KILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC---CcCCCeEE
Confidence 34558999999999999999999999999 8999999874 789999999999999999999999 99999999
Q ss_pred EeeCCCCCCC
Q 014955 335 CSWGSKPTPP 344 (415)
Q Consensus 335 v~~a~~~~~~ 344 (415)
|.|++.+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1.5e-17 Score=132.94 Aligned_cols=119 Identities=23% Similarity=0.346 Sum_probs=73.9
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCccee
Q 014955 185 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (415)
Q Consensus 185 ~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (415)
+.|++|.+...+..|++.++|....|+.- ..+.. .+......++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------------~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------------PPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CCSCC-----------------------------------SCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------------CCCCCCCCCE
Confidence 57888889999999998888765544321 00000 0112223478
Q ss_pred EEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|++|+|.|+
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~---~i~g~~l~V~~a 124 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA---VLDGRELRVQMA 124 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC---CSSSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 99999999999999999999999 8999999764 689999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 014955 339 SKPTPP 344 (415)
Q Consensus 339 ~~~~~~ 344 (415)
+...++
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876554
No 133
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=118.75 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=72.2
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.+.++|||+|||.++++++|+++|++|| .|.+|.+. +|||||+|.+.++|.+|++.||+. .++|++|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG--KVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY---KLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS--CEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC---ccCCcEEEEEECC
Confidence 3458999999999999999999999999 89999998 689999999999999999999999 9999999999998
Q ss_pred CCCCC
Q 014955 340 KPTPP 344 (415)
Q Consensus 340 ~~~~~ 344 (415)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 134
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=125.84 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=71.0
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
++.++|||+|||+++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .+.|+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~---~~~gr~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYG--EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT---SVMGNII 78 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 3457999999999999999999999999 8999998754 689999999999999999999999 9999999
Q ss_pred EEeeCCCC
Q 014955 334 KCSWGSKP 341 (415)
Q Consensus 334 ~v~~a~~~ 341 (415)
+|.|++..
T Consensus 79 ~V~~a~~~ 86 (110)
T 3s8s_A 79 HAQLDIKG 86 (110)
T ss_dssp EEEECSTT
T ss_pred EEEECCCC
Confidence 99998754
No 135
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=130.80 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=82.0
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
+....++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014955 217 WATKGAGN 224 (415)
Q Consensus 217 ~a~~~~~~ 224 (415)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 136
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=122.11 Aligned_cols=78 Identities=28% Similarity=0.468 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+.+.++|||+|||.++++++|+++|++||.|.+|++..++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44668899999999999999999999999999999988653 68999999999999999999999999999999998
Q ss_pred cc
Q 014955 129 AY 130 (415)
Q Consensus 129 ~~ 130 (415)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 137
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=123.06 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||..+++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014955 218 ATKG 221 (415)
Q Consensus 218 a~~~ 221 (415)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 138
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=124.31 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC--ccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~ 129 (415)
..++++|||+|||++ +++++|+++|++||.|.+|++++. +|||||+|.+.++|.+|++.|++ ..+.|++|+|.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 456789999999998 999999999999999999999754 58999999999999999998864 5699999999998
Q ss_pred cccCC
Q 014955 130 YASGQ 134 (415)
Q Consensus 130 ~~~~~ 134 (415)
..+..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76543
No 139
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-16 Score=121.78 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=73.5
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
.....++|||+|||.++++++|+++|++|| .|.+|.+..+ +|||||+|.+.++|.+|++.||+. .++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYG--AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY---DYDGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEE
Confidence 334558999999999999999999999999 8999998765 689999999999999999999999 99999999
Q ss_pred EeeCCCCCC
Q 014955 335 CSWGSKPTP 343 (415)
Q Consensus 335 v~~a~~~~~ 343 (415)
|.|++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999987544
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=122.09 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=77.3
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||..+++++|+++|+.||.|.++.+.+++. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345668999999999999999999999999999999999864 8999999999999999999999999999999999999
Q ss_pred EccC
Q 014955 217 WATK 220 (415)
Q Consensus 217 ~a~~ 220 (415)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9764
No 141
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=121.05 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=73.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
..++|||+|||.++++++|+++|+.||.|.+|.+..+. .+|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999998876 5789999999999999999999999999999999998
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 142
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=7e-17 Score=118.98 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++ +++..++|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999996 58889999999998
Q ss_pred Ec
Q 014955 217 WA 218 (415)
Q Consensus 217 ~a 218 (415)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 143
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.7e-17 Score=122.73 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
...+.++|||+|||.++++++|+++|+.|| |.++.+++++.+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345568999999999999999999999999 999999999877 899999999999999999999 89999999999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=124.73 Aligned_cols=75 Identities=31% Similarity=0.573 Sum_probs=71.9
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
..++|||+|||.++++++|+++|+.|| .|.++++.+++|||||+|.+.++|.+|+..|||. .++|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF---PFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---EETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEeccC
Confidence 347999999999999999999999999 8999999999999999999999999999999999 99999999999976
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=9e-18 Score=127.54 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..+++|||+|||.++++++|+++|+.||.|.+|++. +.+|||||+|.+.++|.+|+..||+..+.|+.|+|.|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 356889999999999999999999999999999998 4568999999999999999999999999999999999864
No 146
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=1.3e-16 Score=124.22 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCC
Q 014955 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (415)
Q Consensus 257 ~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (415)
...+..++|||+|||+++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g 94 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF---QIGM 94 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGS--CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETT
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC---EECC
Confidence 3445568999999999999999999999999 8999988765 489999999999999999999999 9999
Q ss_pred eeeEEeeCCCCCC
Q 014955 331 KQMKCSWGSKPTP 343 (415)
Q Consensus 331 ~~l~v~~a~~~~~ 343 (415)
++|+|.|++.+..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999987654
No 147
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=124.32 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhC------CccccCC
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLN------GRHLFGQ 122 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~------~~~~~g~ 122 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..+| +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567889999999999999999999999999999999874 36899999999999999999999 9999999
Q ss_pred ceeeecccccCCC
Q 014955 123 PIKVNWAYASGQR 135 (415)
Q Consensus 123 ~l~v~~~~~~~~~ 135 (415)
.|+|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876543
No 148
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.2e-17 Score=119.61 Aligned_cols=77 Identities=29% Similarity=0.488 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999998764 368999999999999999999999999999999998
Q ss_pred c
Q 014955 129 A 129 (415)
Q Consensus 129 ~ 129 (415)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 149
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-17 Score=125.64 Aligned_cols=87 Identities=33% Similarity=0.507 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
......++|||+|||..+++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|++|++.+++ .+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3455678999999999999999999999999999999999988999999999999999999999999998 899999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
+++..+..
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 150
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=122.03 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.||+..+.|+.|+|.++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 446789999999999999999999999999999999865 589999999999999999999999999999999998776
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=120.69 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc--CCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~ 130 (415)
..+.++|||+|||.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..+. |+.|+|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 345688999999999999999999999999999999876 579999999999999999999999999 9999999987
Q ss_pred ccC
Q 014955 131 ASG 133 (415)
Q Consensus 131 ~~~ 133 (415)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 152
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=124.60 Aligned_cols=86 Identities=38% Similarity=0.771 Sum_probs=79.9
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcC-CCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce-eCCeeEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIR 214 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~ 214 (415)
+..+.++|||+|||.++++++|+++|+. ||.|.++.+++++ ++.++|||||+|.+.++|.+|++.|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456689999999999999999999999 9999999999997 89999999999999999999999999999 9999999
Q ss_pred EEEccCCCC
Q 014955 215 CNWATKGAG 223 (415)
Q Consensus 215 v~~a~~~~~ 223 (415)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876544
No 153
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=120.45 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=73.4
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .+.|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ---VFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE---ESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC---EECCcEE
Confidence 3458999999999999999999999999 8999999875 599999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014955 334 KCSWGSKPTPP 344 (415)
Q Consensus 334 ~v~~a~~~~~~ 344 (415)
+|.|++.+...
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999876554
No 154
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=124.43 Aligned_cols=81 Identities=27% Similarity=0.560 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568899999999999999999999999999999988754 58999999999999999999999999999999999
Q ss_pred ccccC
Q 014955 129 AYASG 133 (415)
Q Consensus 129 ~~~~~ 133 (415)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87654
No 155
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=122.59 Aligned_cols=82 Identities=28% Similarity=0.580 Sum_probs=74.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceE-EEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v-~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+++++|||+|||.++++++|+++|+.||.|.+| +++.++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 998864 368999999999999999999999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9776544
No 156
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=121.12 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=73.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 355778999999999999999999999999999999988753 5899999999999999999999999999999999
Q ss_pred cccc
Q 014955 128 WAYA 131 (415)
Q Consensus 128 ~~~~ 131 (415)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8753
No 157
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=122.17 Aligned_cols=81 Identities=23% Similarity=0.514 Sum_probs=74.1
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-------cceEEEEeCCHHHHHHHHHHh-cCCCccccCC
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMG-NTTQSSYLFG 330 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-------~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~g 330 (415)
....++|||+|||..+++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.| |+. .+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~---~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG--ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST---HLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC---BSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC--CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC---eECC
Confidence 34558899999999999999999999999 8999999876 799999999999999999999 999 9999
Q ss_pred eeeEEeeCCCCCCC
Q 014955 331 KQMKCSWGSKPTPP 344 (415)
Q Consensus 331 ~~l~v~~a~~~~~~ 344 (415)
+.|+|.|++.....
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999876543
No 158
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-16 Score=122.51 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=78.6
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||..+++++|+++|+.||.|.++.+.+++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34556899999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred EccCCC
Q 014955 217 WATKGA 222 (415)
Q Consensus 217 ~a~~~~ 222 (415)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987643
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=121.89 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=72.2
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeC---------CcceEEEEeCCHHHHHHHHHHhcCCCccccCCe
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (415)
+.++|||+|||+++++++|+++|+.|| .|.+|.+.+ .+|||||+|.+.++|.+|++.|||. .++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG--AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH---TVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC---eeCCe
Confidence 347899999999999999999999999 889998874 3589999999999999999999999 99999
Q ss_pred eeEEeeCCCCCCCC
Q 014955 332 QMKCSWGSKPTPPG 345 (415)
Q Consensus 332 ~l~v~~a~~~~~~~ 345 (415)
.|+|.|++......
T Consensus 79 ~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 79 KLEVRISERATKPA 92 (98)
T ss_dssp ECEEECSSCSSCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999998765543
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=9.6e-17 Score=123.01 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccc---cCCcee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL---FGQPIK 125 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~ 125 (415)
+.+.++|||+|||.++++++|+++|++||.|.+|+++.++ .+|||||+|.+.++|.+|+..||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4467889999999999999999999999999999998864 468999999999999999999999887 889999
Q ss_pred eecccccCCCC
Q 014955 126 VNWAYASGQRE 136 (415)
Q Consensus 126 v~~~~~~~~~~ 136 (415)
|.++..+....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998765443
No 161
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.8e-17 Score=119.62 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=76.3
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccC
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 220 (415)
.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|+ .++|..+.|+.|+|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q 014955 221 G 221 (415)
Q Consensus 221 ~ 221 (415)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1e-17 Score=160.06 Aligned_cols=150 Identities=17% Similarity=0.366 Sum_probs=108.6
Q ss_pred HHHHHhccCCcceEEEee----cC--CCceE-----EEEEecHHHHHHHHHHhCCccccCC---------------ceee
Q 014955 73 LQEVFSSTGPVEGCKLIR----KD--KSSYG-----FIHYFDRRSAAMAILSLNGRHLFGQ---------------PIKV 126 (415)
Q Consensus 73 l~~~f~~~G~v~~v~~~~----~~--~~g~a-----fV~f~~~~~A~~a~~~l~~~~~~g~---------------~l~v 126 (415)
|..+|.++|+|..|..+. ++ ..+|+ |+.|.+..++..++..++......+ .+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999888773332 11 22333 7777776555444432222211111 1111
Q ss_pred ecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc
Q 014955 127 NWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206 (415)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 206 (415)
|...........+.++|||+|||..+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||.
T Consensus 89 -~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 89 -WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred -cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 1111112223345679999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeeEEEEEccCCCC
Q 014955 207 WLGSRQIRCNWATKGAG 223 (415)
Q Consensus 207 ~~~g~~l~v~~a~~~~~ 223 (415)
.|.|+.|.|.|+.....
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 99999999999976543
No 163
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=4.4e-17 Score=122.46 Aligned_cols=79 Identities=32% Similarity=0.478 Sum_probs=73.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
++++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 357899999999999999999999999999999988753 6899999999999999999999999999999999987
Q ss_pred ccC
Q 014955 131 ASG 133 (415)
Q Consensus 131 ~~~ 133 (415)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 664
No 164
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=9.8e-17 Score=123.18 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=77.6
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||..+++++|+++|+.||.|.++.+++++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Ecc
Q 014955 217 WAT 219 (415)
Q Consensus 217 ~a~ 219 (415)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=7.8e-17 Score=130.59 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC--Cceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (415)
++...+|||+||++++|+++|+++|++||.|.+|++..++.+|||||+|.+.++|++|++.|||..|.| +.|+|.|+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 445677999999999999999999999999999999877667899999999999999999999999966 999999998
Q ss_pred ccC
Q 014955 131 ASG 133 (415)
Q Consensus 131 ~~~ 133 (415)
.+.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 166
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=121.22 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.4
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCC-----eeeE
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-----KQMK 334 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-----~~l~ 334 (415)
...++|||+|||+++++++|+++|++|| .|.+|.+..+ |||||+|.+.++|.+|++.||+. .+.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE---EEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC---CccCCcCcceEEE
Confidence 3457999999999999999999999999 8999999998 99999999999999999999999 8999 9999
Q ss_pred EeeCCCCCCC
Q 014955 335 CSWGSKPTPP 344 (415)
Q Consensus 335 v~~a~~~~~~ 344 (415)
|.|++.+...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 167
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=119.45 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=75.9
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCC-cceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR-SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.++|||+|||.++++++|+++|+.||.|.++.+..++.++. ++|||||+|.+.++|.+|++.|+|..++|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999998876655 89999999999999999999999999999999999986
Q ss_pred CC
Q 014955 220 KG 221 (415)
Q Consensus 220 ~~ 221 (415)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 168
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=6e-17 Score=121.69 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..++++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 34568899999998 99999999999999999999883 68999999999999999999999999999999999865
Q ss_pred c
Q 014955 132 S 132 (415)
Q Consensus 132 ~ 132 (415)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=123.62 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=72.6
Q ss_pred CcceeEEE--ccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCcccc-----CCee
Q 014955 260 PQYTTVYV--GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-----FGKQ 332 (415)
Q Consensus 260 ~~~~~l~v--~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-----~g~~ 332 (415)
.+.++||| +||++++++++|+++|++|| .|.+|.+..+||||||+|.+.++|.+|++.|||. .+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~---~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK---EVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC---EEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EEccccCCCcE
Confidence 34578999 77999999999999999999 9999999999999999999999999999999999 77 6899
Q ss_pred eEEeeCCCCCCC
Q 014955 333 MKCSWGSKPTPP 344 (415)
Q Consensus 333 l~v~~a~~~~~~ 344 (415)
|.|.|++.....
T Consensus 98 l~v~~a~~~p~~ 109 (114)
T 2cq2_A 98 LYLNFVEKVQWS 109 (114)
T ss_dssp CEEEEESCCCCS
T ss_pred EEEEecccCccc
Confidence 999999865443
No 170
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=125.11 Aligned_cols=85 Identities=26% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..+++ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 45567899999999999999999999999999999999875 368999999999999999999998 8999999999
Q ss_pred cccccCCCCC
Q 014955 128 WAYASGQRED 137 (415)
Q Consensus 128 ~~~~~~~~~~ 137 (415)
++........
T Consensus 92 ~a~~~~~~~~ 101 (116)
T 2cqd_A 92 LAYLGAKPRS 101 (116)
T ss_dssp ESTTTCCCCC
T ss_pred EcccCCCccc
Confidence 9976554433
No 171
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=132.94 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=77.1
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCC--CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..++|||+|||.++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014955 218 ATKG 221 (415)
Q Consensus 218 a~~~ 221 (415)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 172
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=124.71 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=73.2
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
..++|||+|||+++++++|+++|++|| .|.+|.+.+++|||||+|.+.++|.+|+..|||. .++|++|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS---KFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC---BSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC---EECCeEEEEEECCC
Confidence 347899999999999999999999999 9999999999999999999999999999999999 99999999999876
Q ss_pred CCC
Q 014955 341 PTP 343 (415)
Q Consensus 341 ~~~ 343 (415)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 443
No 173
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=9.9e-17 Score=121.24 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcce--------EEEeecCC----CceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
+.+.++|||+|||.++++++|+++|+.||.|.+ |++..++. +|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345688999999999999999999999999999 99988753 589999999999999999999999999
Q ss_pred CCceeeecc
Q 014955 121 GQPIKVNWA 129 (415)
Q Consensus 121 g~~l~v~~~ 129 (415)
|+.|+|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999986
No 174
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=119.16 Aligned_cols=76 Identities=34% Similarity=0.648 Sum_probs=69.4
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCeEEE
Confidence 447899999999999999999999999 8999999865 689999999999999999999999 99999999
Q ss_pred EeeCCCC
Q 014955 335 CSWGSKP 341 (415)
Q Consensus 335 v~~a~~~ 341 (415)
|.|++.+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9998764
No 175
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=122.42 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=73.3
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .++|++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTS--CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEE
Confidence 4557899999999999999999999999 8999999764 799999999999999999999999 9999999
Q ss_pred EEeeCCCCCCC
Q 014955 334 KCSWGSKPTPP 344 (415)
Q Consensus 334 ~v~~a~~~~~~ 344 (415)
+|.|++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876544
No 176
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=9.5e-17 Score=123.39 Aligned_cols=86 Identities=30% Similarity=0.390 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.+ +..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456689999999999999999999999999999999999888999999999999999999999975 599999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987543
No 177
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=123.48 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.||.|.++.+++++. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999976 9999999999999999999999 899999999999998
Q ss_pred ccC
Q 014955 218 ATK 220 (415)
Q Consensus 218 a~~ 220 (415)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 178
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=124.14 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345668999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9887654
No 179
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=121.56 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=73.8
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
..+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFG--SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF---GYDHLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTC--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC---EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC---eeCCcE
Confidence 34558999999999999999999999999 8999999865 589999999999999999999999 999999
Q ss_pred eEEeeCCCCCCC
Q 014955 333 MKCSWGSKPTPP 344 (415)
Q Consensus 333 l~v~~a~~~~~~ 344 (415)
|+|.|++.+...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876544
No 180
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=1e-16 Score=116.95 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=70.0
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
.+|||+|||.++++++|+++|+.|| .|.++.+.++ +|+|||+|.+.++|.+|++.|||. .++|++|+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC---eeCCcEEEEE
Confidence 5899999999999999999999999 8999998866 799999999999999999999999 9999999999
Q ss_pred eCCCC
Q 014955 337 WGSKP 341 (415)
Q Consensus 337 ~a~~~ 341 (415)
|++.+
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99865
No 181
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=4.2e-17 Score=122.36 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999999989988889999999999999999999999999999999999999987
Q ss_pred cC
Q 014955 219 TK 220 (415)
Q Consensus 219 ~~ 220 (415)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 182
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=6e-17 Score=124.17 Aligned_cols=78 Identities=24% Similarity=0.487 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+.++|||+|||.++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++..+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3456889999999999999999999999999999998 589999999999999999999999999999999998765
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 183
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=119.86 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=72.3
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
...++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|+.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHG--TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM---TIKENIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE---ESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC---EECCEEEE
Confidence 4457899999999999999999999999 8999999865 599999999999999999999999 99999999
Q ss_pred EeeCCCCCC
Q 014955 335 CSWGSKPTP 343 (415)
Q Consensus 335 v~~a~~~~~ 343 (415)
|.|++.+..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987543
No 184
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=121.90 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC-----Cceeeec
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-----QPIKVNW 128 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~l~v~~ 128 (415)
...++|||+|||.++++++|+++|+.||.|.+|+++.+ |||||+|.+.++|.+|++.||+..|.| +.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 45688999999999999999999999999999999887 899999999999999999999999999 9999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+.++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987654
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=124.05 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=74.6
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecC-CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
......++|||+|||.++++++|+++|+.|| |.++.+.+++ .+++++|||||+|.+.++|.+|+ .|+|..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345668999999999999999999999999 9999999987 58999999999999999999999 8999999999999
Q ss_pred EEEccCC
Q 014955 215 CNWATKG 221 (415)
Q Consensus 215 v~~a~~~ 221 (415)
|+++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 186
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=117.18 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=76.8
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.| .|.++.++++ .+++++|||||+|.+.++|.+|++ +++..++|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456799999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 014955 218 ATKGA 222 (415)
Q Consensus 218 a~~~~ 222 (415)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97753
No 187
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2.2e-16 Score=120.78 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=73.1
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCC---e
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG---K 331 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g---~ 331 (415)
...++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .+.| +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG--VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS---QTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC---CCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC---ccCCCCCc
Confidence 4458999999999999999999999999 8999999876 799999999999999999999999 7887 9
Q ss_pred eeEEeeCCCCCCC
Q 014955 332 QMKCSWGSKPTPP 344 (415)
Q Consensus 332 ~l~v~~a~~~~~~ 344 (415)
+|+|.|++.+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876543
No 188
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=123.48 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=75.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
....++|||+|||.++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+..||+..+.|+.|+|.|+.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 345688999999999999999999999999999999887 589999999999999999999999999999999999876
Q ss_pred CCCC
Q 014955 133 GQRE 136 (415)
Q Consensus 133 ~~~~ 136 (415)
....
T Consensus 100 ~~~~ 103 (109)
T 1x4g_A 100 PDMT 103 (109)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5443
No 189
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.3e-16 Score=118.92 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=77.3
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||.++++++|+++|+.||.|.++.+.++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 977543
No 190
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=117.73 Aligned_cols=75 Identities=24% Similarity=0.459 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHh-CCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 129 (415)
..+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..| ++..+.|+.|+|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345688999999999999999999999999999999875 479999999999999999988 999999999999986
No 191
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=123.66 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=78.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
+.++|||+|||..+++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCC
Q 014955 220 KGA 222 (415)
Q Consensus 220 ~~~ 222 (415)
.+.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 192
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1e-16 Score=119.51 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=73.0
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
.+.++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECG--HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM---KLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTS--CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC---CBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEEEE
Confidence 3457999999999999999999999999 8999998864 799999999999999999999999 999999999
Q ss_pred eeCCCCCCC
Q 014955 336 SWGSKPTPP 344 (415)
Q Consensus 336 ~~a~~~~~~ 344 (415)
.|++.+..+
T Consensus 81 ~~a~~~~~~ 89 (92)
T 2dgv_A 81 RIDRNASGP 89 (92)
T ss_dssp EECSCCSSC
T ss_pred EEcCCCCCC
Confidence 999876543
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=121.74 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC-----CceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
..+.++|||+|||.++++++|+++|+.|| |.+|+++.++. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999988753 689999999999999999 999999999999999
Q ss_pred cccccCCC
Q 014955 128 WAYASGQR 135 (415)
Q Consensus 128 ~~~~~~~~ 135 (415)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 194
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=4.2e-16 Score=118.65 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=71.5
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.+.++|||+|||+++++++|+++|++|| .|.+|.+. ++||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFG--KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGK---DLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHS--CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTE---EETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCC---ccCCCEEEEEEcC
Confidence 3457899999999999999999999999 89999988 469999999999999999999999 9999999999998
Q ss_pred CCCCC
Q 014955 340 KPTPP 344 (415)
Q Consensus 340 ~~~~~ 344 (415)
.+...
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1e-16 Score=126.98 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=81.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||..+++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 014955 217 WATKGAGN 224 (415)
Q Consensus 217 ~a~~~~~~ 224 (415)
|+..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765443
No 196
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=3.3e-17 Score=117.08 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=71.8
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
+|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 9999999999999875
No 197
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-16 Score=118.96 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=78.8
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
....+.++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++ ++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344566899999999999999999999999999999999998899999999999999999999998 578999999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987644
No 198
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=116.73 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=71.7
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
....++|||+|||.++++++|+++|++|| .|.+|.+.+ +||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYG--PVIECDIVK--DYAFVHMERAEDAVEAIRGLDNT---EFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTS--CCCEEEECS--SEEEEEESCHHHHHHHHHHHTTE---EETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCC---eeCCcEEEEEEc
Confidence 34558999999999999999999999999 899999985 49999999999999999999999 999999999999
Q ss_pred CCCCC
Q 014955 339 SKPTP 343 (415)
Q Consensus 339 ~~~~~ 343 (415)
+.+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87544
No 199
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=116.57 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=71.0
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
...++|||+|||.++++++|+++|+.|| .|.+|++.+ +||||+|.+.++|.+|++.|||. .++|++|+|.|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRG--RVIECDVVK--DYAFVHMEKEADAKAAIAQLNGK---EVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHS--CEEEEEECS--SCEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCC--CEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEECC
Confidence 3457899999999999999999999999 899999985 49999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014955 340 KPTP 343 (415)
Q Consensus 340 ~~~~ 343 (415)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=121.71 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
.+.++|||+|||..+++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred c
Q 014955 219 T 219 (415)
Q Consensus 219 ~ 219 (415)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 201
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=117.82 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|+..||+..+.|+.|+|.++.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 446788999999999999999999999999999999744 9999999999999999999999999999999999776
Q ss_pred CCC
Q 014955 133 GQR 135 (415)
Q Consensus 133 ~~~ 135 (415)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 202
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=122.29 Aligned_cols=80 Identities=29% Similarity=0.432 Sum_probs=73.3
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
..++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~~~g~~l~V 80 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHG--PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK---SLHGKAIKV 80 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSS--CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC---BCSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCEEEEE
Confidence 347899999999999999999999999 8999999876 499999999999999999999999 999999999
Q ss_pred eeCCCCCCCC
Q 014955 336 SWGSKPTPPG 345 (415)
Q Consensus 336 ~~a~~~~~~~ 345 (415)
.|++.+....
T Consensus 81 ~~a~~~~~~~ 90 (116)
T 2fy1_A 81 EQAKKPSFQS 90 (116)
T ss_dssp EECCCSSCSS
T ss_pred EECCCCCCCC
Confidence 9998765443
No 203
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=119.91 Aligned_cols=78 Identities=31% Similarity=0.454 Sum_probs=72.1
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
.....++|||+|||+.+++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.||+. .++|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG--PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI---RLYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC---EECCCE
Confidence 344568999999999999999999999999 8999999875 689999999999999999999999 999999
Q ss_pred eEEeeCCC
Q 014955 333 MKCSWGSK 340 (415)
Q Consensus 333 l~v~~a~~ 340 (415)
|+|.|++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999875
No 204
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=119.29 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCcccCHHHHH----HHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
.+.++|||+|||..+++++|+ ++|+.||.|.+++++.++.+ +|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 445799999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEccCCC
Q 014955 215 CNWATKGA 222 (415)
Q Consensus 215 v~~a~~~~ 222 (415)
|+++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 205
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=120.57 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=73.9
Q ss_pred CCCCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccC
Q 014955 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (415)
Q Consensus 256 ~~~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (415)
+...++.++|||+|||..+++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~i~ 94 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF---ELA 94 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS--CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC---CSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC---EEC
Confidence 33445568999999999999999999999999 8999998754 689999999999999999999999 999
Q ss_pred CeeeEEeeCCCCC
Q 014955 330 GKQMKCSWGSKPT 342 (415)
Q Consensus 330 g~~l~v~~a~~~~ 342 (415)
|+.|+|.|++.+.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999998653
No 206
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=130.12 Aligned_cols=87 Identities=21% Similarity=0.375 Sum_probs=79.8
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceE--EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc----eeC
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLG 209 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~ 209 (415)
......++|||+|||.++++++|+++|+.||.|.. |++++|+.+++++|||||+|.+. +|.+|+..|+|. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33456789999999999999999999999999976 99999988999999999999999 999999999999 999
Q ss_pred CeeEEEEEccCCCC
Q 014955 210 SRQIRCNWATKGAG 223 (415)
Q Consensus 210 g~~l~v~~a~~~~~ 223 (415)
|+.|+|+++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999977543
No 207
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=126.92 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcce--EEEeecC----CCceEEEEEecHHHHHHHHHHhCCc----cccCC
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGR----HLFGQ 122 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~ 122 (415)
..++++|||+|||+++|+++|+++|++||.|.. |+++.++ .+|||||+|.+. +|.+|+..||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346688999999999999999999999999966 9999876 368999999999 999999999999 99999
Q ss_pred ceeeecccccCCC
Q 014955 123 PIKVNWAYASGQR 135 (415)
Q Consensus 123 ~l~v~~~~~~~~~ 135 (415)
.|+|.++.+..+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999776543
No 208
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.4e-16 Score=129.77 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=80.8
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..+.++|||+|||..+++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987544
No 209
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=122.67 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcc--------eEEEeecC----CCceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--------GCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
..+.++|||+|||.++++++|+++|+.||.|. .|+++.++ .+|||||+|.+.++|.+|+..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 69998874 3689999999999999999999999999
Q ss_pred CCceeeecccccCCC
Q 014955 121 GQPIKVNWAYASGQR 135 (415)
Q Consensus 121 g~~l~v~~~~~~~~~ 135 (415)
|+.|+|.++..+...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876544
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=123.69 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC-----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
....++|||+|||.++++++|+++|+.|| |.+|++..++ .+|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568899999999999999999999999 9999998875 3689999999999999999 899999999999999
Q ss_pred ccccc
Q 014955 128 WAYAS 132 (415)
Q Consensus 128 ~~~~~ 132 (415)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98654
No 211
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=125.36 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=71.4
Q ss_pred CcceEEEcCCCCCCCHHHHH----HHHhccCCcceEEEeec-CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
++++|||+|||+.+++++|+ ++|++||.|.+|.+... +.+|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 46789999999999999876 69999999999988664 46799999999999999999999999999999999998
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
..+.
T Consensus 108 ~~~~ 111 (127)
T 2a3j_A 108 ETPQ 111 (127)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7654
No 212
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=119.99 Aligned_cols=81 Identities=26% Similarity=0.518 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcc-eEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCc----
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQP---- 123 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~---- 123 (415)
..+.++|||+|||.++++++|+++|++||.|. +|+++.++. +|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 999998763 489999999999999999999999999999
Q ss_pred eeeecccccC
Q 014955 124 IKVNWAYASG 133 (415)
Q Consensus 124 l~v~~~~~~~ 133 (415)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987654
No 213
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-16 Score=117.22 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
...+.++|||+|||+++++++|+++|++||.+.|.+|.+. +|||||+|.+.++|.+|+..|||. .++|++|+|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK---VLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE---EETTEEEEEEC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC---EeCCcEEEEEE
Confidence 3445689999999999999999999999922289988876 579999999999999999999999 99999999999
Q ss_pred CCCCCC
Q 014955 338 GSKPTP 343 (415)
Q Consensus 338 a~~~~~ 343 (415)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987544
No 214
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=3.3e-16 Score=123.59 Aligned_cols=86 Identities=24% Similarity=0.340 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
.....++|||+|||..+++++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9977543
No 215
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3.1e-17 Score=121.60 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=66.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC--CcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
.+|||+|||.++++++|+++|+.|| .|.+|+++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999998753 5899999999999999999999999999999999987
Q ss_pred ccCC
Q 014955 131 ASGQ 134 (415)
Q Consensus 131 ~~~~ 134 (415)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 216
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=122.94 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.....++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .++|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTC--CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcC--CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC---EECCEEE
Confidence 444568999999999999999999999999 8999999876 799999999999999999999999 9999999
Q ss_pred EEeeCCCC
Q 014955 334 KCSWGSKP 341 (415)
Q Consensus 334 ~v~~a~~~ 341 (415)
+|.|++.+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998764
No 217
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=131.76 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccC--CcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
...++|||+|||+++++++|+++|+.|| .|.+|+++.++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568899999999999999999999999 999999998753 5899999999999999999999999999999999
Q ss_pred ccccc
Q 014955 128 WAYAS 132 (415)
Q Consensus 128 ~~~~~ 132 (415)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 88543
No 218
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=119.40 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=68.9
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCee-eEEEEEeCCcceEEEEeCCHHHHHHHHHHhcC-CCccccCCeeeEEeeC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT-TQSSYLFGKQMKCSWG 338 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~-i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~~~g~~l~v~~a 338 (415)
..++|||+|||+++++++|+++|++|| . |..+.+ .++|||||+|.+.++|.+|++.||| . .++|++|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK--LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKV---ELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT--CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTC---EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCe---eECCEEEEEEEc
Confidence 447899999999999999999999999 6 454444 5689999999999999999999999 8 899999999999
Q ss_pred CCCCCC
Q 014955 339 SKPTPP 344 (415)
Q Consensus 339 ~~~~~~ 344 (415)
+.+...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 876443
No 219
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=118.67 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceE-EEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
...++|||+|||+++++++|+++|+.||.|.+| .++.++.++.|||+|.+.++|.+|+..||+..+.|+.|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 346789999999999999999999999999999 4888887788999999999999999999999999999999998765
No 220
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.4e-16 Score=120.03 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.|| |.+|+++.++. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44678999999999999999999999997 99999998764 589999999999999999 8999999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9776543
No 221
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.8e-16 Score=118.03 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=70.7
Q ss_pred CCCcceeEEEccCCc-cCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 258 NNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~-~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
..++.++|||+|||. ++++++|+++|+.|| .|.++++. +|||||+|.+.++|.+|++.|||. .++|++|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE---MNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGS--CEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS---EETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEE
Confidence 345568999999998 999999999999999 89999985 799999999999999999999999 9999999999
Q ss_pred eCCCC
Q 014955 337 WGSKP 341 (415)
Q Consensus 337 ~a~~~ 341 (415)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 222
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.4e-16 Score=132.31 Aligned_cols=136 Identities=20% Similarity=0.332 Sum_probs=73.6
Q ss_pred EEEcCHHHHHHHHHHhCCceeC--CeeEEEEEccCCCCCCcccccccccccccccCCCCcCCcCCCCCCCCCCCCcceeE
Q 014955 188 VSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265 (415)
Q Consensus 188 v~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (415)
.+|.+.++|+.++..+++.... |+.....++....... +.... ..........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~-------------~~~~~--~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS-------------YERVR--NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC-------------ccccc--cCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999988886553 5555554422111000 00000 00000011122334556899
Q ss_pred EEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 266 ~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
||+|||+.+++++|+++|+.|| .|..|.+..+ +|||||+|.+.++|.+|+..|||. .|.|++|.|.|++
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQTIQVDWCF 150 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEESE
T ss_pred EEeCCCCCCCHHHHHHHhhcCC--CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEEEec
Confidence 9999999999999999999999 8999999865 699999999999999999999999 9999999999997
Q ss_pred CCCC
Q 014955 340 KPTP 343 (415)
Q Consensus 340 ~~~~ 343 (415)
....
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6544
No 223
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.5e-17 Score=124.72 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3456899999999999999999999999999999998765 3689999999999999999 9999999999999999
Q ss_pred ccccC
Q 014955 129 AYASG 133 (415)
Q Consensus 129 ~~~~~ 133 (415)
+..+.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 86643
No 224
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=123.81 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=70.5
Q ss_pred CcceeEEEccCCccCCHHHHH----HHHhhcCCeeeEEEEEeC---CcceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~----~~F~~~G~~~i~~i~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
++.++|||+|||+.+++++|+ ++|++|| .|.+|.+.+ .+|||||+|.+.++|..|+..|||. .+.|++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G--~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~---~l~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQG--DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY---PFQGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC---CCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC--CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC---EeCCCE
Confidence 445789999999999999876 6999999 899998864 4899999999999999999999999 999999
Q ss_pred eEEeeCCCCC
Q 014955 333 MKCSWGSKPT 342 (415)
Q Consensus 333 l~v~~a~~~~ 342 (415)
|+|.|++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998653
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=117.06 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
+.+.++|||+|||.++++++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|+..||+..+.|+.|+|.++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 446688999999999999999999999999999999744 9999999999999999999999999999999999776
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.8e-16 Score=119.67 Aligned_cols=78 Identities=32% Similarity=0.594 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
.+.++|||+|||.++++++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.||+..+.|+.|+|.++.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4568899999999999999999999999999999873 599999999999999999999999999999999997765
Q ss_pred CC
Q 014955 134 QR 135 (415)
Q Consensus 134 ~~ 135 (415)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 227
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=119.91 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.3
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
++|||+|||.++++++|+++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+|.|++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG--PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK---VICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC--CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHS---CSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC---eECCcEEEEEEccCC
Confidence 3799999999999999999999999 8999999997 999999999999999999999999 899999999999876
Q ss_pred CCC
Q 014955 342 TPP 344 (415)
Q Consensus 342 ~~~ 344 (415)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 228
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=116.36 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=72.8
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998889999999999999999999999988 9999999999986
No 229
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=1.9e-16 Score=122.20 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456889999999999999999999999999999998765 358999999999999999999999999999999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 876653
No 230
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-16 Score=118.98 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccc
Q 014955 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (415)
Q Consensus 53 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (415)
..+.++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 34678899999998 99999999999999999999984 57999999999999999999999999999999999976
Q ss_pred cCCC
Q 014955 132 SGQR 135 (415)
Q Consensus 132 ~~~~ 135 (415)
....
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 231
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=121.16 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
..+.++|||+|||.++|+++|+++|++||.|.+|.++.++ ++|||||+|.+.++|.+|+. +++..+.|+.|.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456889999999999999999999999999999999864 47999999999999999998 8999999999999987
Q ss_pred cc
Q 014955 130 YA 131 (415)
Q Consensus 130 ~~ 131 (415)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 232
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=2.9e-16 Score=121.06 Aligned_cols=96 Identities=22% Similarity=0.406 Sum_probs=84.2
Q ss_pred ccCCceeeecccccCCCCCCCCcceEEEcCCCcc-cCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHH
Q 014955 119 LFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197 (415)
Q Consensus 119 ~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 197 (415)
..|..+.+..+............++|||+|||.. +++++|+++|+.||.|.++.+ ++|||||+|.+.++|.
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3467788877766665555666789999999999 999999999999999999988 4689999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEccCCC
Q 014955 198 SAINDLTGKWLGSRQIRCNWATKGA 222 (415)
Q Consensus 198 ~a~~~l~~~~~~g~~l~v~~a~~~~ 222 (415)
+|++.|++..+.|+.|+|+++....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999997543
No 233
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-16 Score=115.85 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=71.9
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.+.++|||+|+ ++++++|+++|++|| .|.+|.+.+.+|||||+|.+.++|.+|+..|||. .+.|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE---EETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCC--CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEECC
Confidence 34579999996 899999999999999 8999999999999999999999999999999999 9999999999998
Q ss_pred CCCCC
Q 014955 340 KPTPP 344 (415)
Q Consensus 340 ~~~~~ 344 (415)
.+...
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 234
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=121.66 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCcceEEEcCCCcccCHHHHH---HHhcCCCCceEEEEeecCCCC---CcceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 139 SGHFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQKTG---RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
...++|||+|||.++++++|+ ++|+.||.|.++.+.+++.++ .++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445799999999999999999 999999999999999887643 56699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 014955 213 IRCNWATKGA 222 (415)
Q Consensus 213 l~v~~a~~~~ 222 (415)
|+|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 235
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=121.57 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=78.1
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCC-ceEEEEe-ecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeeEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIR 214 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 214 (415)
.+.++|||+|||.++++++|+++|+.||. |.++.++ .++.++.++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 787888999999999999999999999996 5899999999
Q ss_pred EEEccCCCC
Q 014955 215 CNWATKGAG 223 (415)
Q Consensus 215 v~~a~~~~~ 223 (415)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987644
No 236
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.4e-16 Score=120.82 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
.....++|||+|||.++++++|+++|++|| .|.+|.+. +|||||+|.+.++|.+|++.|||. .++|+.|+|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK---SFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC---EETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEE
Confidence 344558999999999999999999999999 89999998 899999999999999999999999 99999999999
Q ss_pred CCCCC
Q 014955 338 GSKPT 342 (415)
Q Consensus 338 a~~~~ 342 (415)
++.+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98654
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=7.1e-16 Score=121.65 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=75.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45677899999999999999999999999999999998875 468999999999999999999999999999999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 238
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=117.07 Aligned_cols=78 Identities=33% Similarity=0.571 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcc--CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
..+.++|||+|||.++++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 3467899999999999999999999999 889888765 4699999999999999999999999999999999998
Q ss_pred ccCC
Q 014955 131 ASGQ 134 (415)
Q Consensus 131 ~~~~ 134 (415)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 239
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=119.54 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=72.5
Q ss_pred cceeEEEccCCccCCHHHHHHHHhh-cCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccc-cCCeee
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSY-LFGKQM 333 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~-~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~-~~g~~l 333 (415)
+.++|||+|||+++++++|+++|+. || .|.+|++.++ +|||||+|.+.++|.+|++.||+. . ++|++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA---VGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT--TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC---CSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC---cccCCEeE
Confidence 4478999999999999999999999 99 8999999875 799999999999999999999999 8 999999
Q ss_pred EEeeCCCCCCC
Q 014955 334 KCSWGSKPTPP 344 (415)
Q Consensus 334 ~v~~a~~~~~~ 344 (415)
+|.|++.+...
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999765543
No 240
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=122.14 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...++|||+|||..+++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3457999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 241
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-16 Score=115.80 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=68.8
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
...++|||+|||+++++++|+++|+.||.+. ..+...+.+|||||+|.+.++|.+|++.|||. .++|+.|+|.|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL---RLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---CSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEcC
Confidence 3457999999999999999999999999332 34444566899999999999999999999999 9999999999998
Q ss_pred CCC
Q 014955 340 KPT 342 (415)
Q Consensus 340 ~~~ 342 (415)
.+.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 242
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=118.76 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. +|||||+|.+.++|.+|++.||+..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4568899999999999999999999999999999988753 689999999999999999999999999999999875
Q ss_pred c
Q 014955 130 Y 130 (415)
Q Consensus 130 ~ 130 (415)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 243
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.1e-17 Score=121.73 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=73.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.+ |.+|+..|+|..++|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998775
Q ss_pred C
Q 014955 222 A 222 (415)
Q Consensus 222 ~ 222 (415)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=121.11 Aligned_cols=84 Identities=18% Similarity=0.481 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee--------
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-------- 208 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-------- 208 (415)
...+.++|||+|||.++++++|+++|+.||.|.++.+++++ ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34556899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred CCeeEEEEEccCC
Q 014955 209 GSRQIRCNWATKG 221 (415)
Q Consensus 209 ~g~~l~v~~a~~~ 221 (415)
.+++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5888999998754
No 245
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=118.62 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
...++|||+|||.++++++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4567899999999999999999999999999887777643 589999999999999999999999999999999998
Q ss_pred ccc
Q 014955 130 YAS 132 (415)
Q Consensus 130 ~~~ 132 (415)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 246
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=9.5e-17 Score=121.38 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccC-C
Q 014955 54 STCRSVYVGNIHT------QVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFG-Q 122 (415)
Q Consensus 54 ~~~~~v~v~nlp~------~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g-~ 122 (415)
...++|||+|||. ++++++|+++|++||.|.+|+++.++. +|||||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3568899999999 999999999999999999999998764 5899999999999999999999999999 9
Q ss_pred ceeeeccccc
Q 014955 123 PIKVNWAYAS 132 (415)
Q Consensus 123 ~l~v~~~~~~ 132 (415)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998654
No 247
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=119.22 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=74.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+.. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999998753 48999999999999999988 99999999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876544
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=122.78 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=76.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
..++|||+|||..+++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999888999999999999999999999 899999999999999986
Q ss_pred CC
Q 014955 220 KG 221 (415)
Q Consensus 220 ~~ 221 (415)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 249
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=120.04 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCc----ceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.| ..+++...+.+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999998 566666566789999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 014955 129 AYASGQRE 136 (415)
Q Consensus 129 ~~~~~~~~ 136 (415)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98765443
No 250
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=126.34 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=77.5
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
....+.++|||+|||..+++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 014955 216 NWA 218 (415)
Q Consensus 216 ~~a 218 (415)
+|+
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 251
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=118.35 Aligned_cols=79 Identities=20% Similarity=0.413 Sum_probs=71.5
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCee-eEEEEEe-------CCcceEEEEeCCHHHHHHHHHHhc--CCCccccCC
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQ-------RDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFG 330 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~-i~~i~~~-------~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~g 330 (415)
+.++|||+|||+++++++|+++|+.|| . |.+|.+. +.+|||||+|.+.++|.+|++.|+ +. .++|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~---~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVT--EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI---QLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHS--TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS---CBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc--CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc---eecC
Confidence 458999999999999999999999999 7 9999998 458999999999999999999996 57 8999
Q ss_pred eeeEEeeCCCCCCC
Q 014955 331 KQMKCSWGSKPTPP 344 (415)
Q Consensus 331 ~~l~v~~a~~~~~~ 344 (415)
+.|+|.|++....+
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999999876543
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=122.28 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCc-eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
...+.++|||+|||.++++++|+++|+.||.| .++++++++ +++++|||||+|.+.++|.+|++. ++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34556899999999999999999999999999 899999997 899999999999999999999986 999999999999
Q ss_pred EEccCC
Q 014955 216 NWATKG 221 (415)
Q Consensus 216 ~~a~~~ 221 (415)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 253
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=2.8e-16 Score=115.67 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|++||.|.+|+++.++. +|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999988754 5899999999999999995 588889999999986
Q ss_pred c
Q 014955 129 A 129 (415)
Q Consensus 129 ~ 129 (415)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 254
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=120.66 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=71.8
Q ss_pred cceeEEEccCCccCCHHHHH---HHHhhcCCeeeEEEEEeCC---------cceEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014955 261 QYTTVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~---~~F~~~G~~~i~~i~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (415)
..++|||+|||+++++++|+ ++|++|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~---~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG--KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV---VV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTS--CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE---EE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccC--CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC---EE
Confidence 44789999999999999999 9999999 8999999865 379999999999999999999999 99
Q ss_pred CCeeeEEeeCCCCCC
Q 014955 329 FGKQMKCSWGSKPTP 343 (415)
Q Consensus 329 ~g~~l~v~~a~~~~~ 343 (415)
+|++|+|.|++.+..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999987653
No 255
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=1e-15 Score=118.00 Aligned_cols=76 Identities=29% Similarity=0.516 Sum_probs=70.5
Q ss_pred cceeEEEccCCcc-CCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 261 QYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 261 ~~~~l~v~nlp~~-~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..++|||+|||+. +++++|+++|++|| .|.+|.+ .+|||||+|.+.++|.+|++.||+. .++|+.|+|.|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV--HKGYAFVQYSNERHARAAVLGENGR---VLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC---EETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 3479999999999 99999999999999 8999998 6799999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014955 340 KPTP 343 (415)
Q Consensus 340 ~~~~ 343 (415)
.+..
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 256
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=119.35 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeec---CCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
..+.++|||+|||.++++++|+++|+.||.| +++.+ +.+|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4467899999999999999999999999987 34443 34689999999999999999999999999999999999
Q ss_pred cccCCC
Q 014955 130 YASGQR 135 (415)
Q Consensus 130 ~~~~~~ 135 (415)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 776543
No 257
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=117.46 Aligned_cols=78 Identities=31% Similarity=0.513 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCC-cceEEEeecCCCceEEEEEecHHHHHHHHHHhCC-ccccCCceeeecccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAYA 131 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~~ 131 (415)
...++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 45678999999999999999999999999 6666653 357999999999999999999999 999999999999977
Q ss_pred cCC
Q 014955 132 SGQ 134 (415)
Q Consensus 132 ~~~ 134 (415)
+..
T Consensus 83 ~~~ 85 (93)
T 2cqh_A 83 KKL 85 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=118.18 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
....++|||+|||.++++++|+++|+.||.|.+ +.++.+ .+++++|||||+|.+.++|.+|++. ++..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 355689999999999999999999999999987 888888 7899999999999999999999996 9999999999999
Q ss_pred EccCCC
Q 014955 217 WATKGA 222 (415)
Q Consensus 217 ~a~~~~ 222 (415)
++..+.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986543
No 259
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=110.92 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=66.9
Q ss_pred Ccce-EEEcCCCCCCCHHH----HHHHHhccC-CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 55 TCRS-VYVGNIHTQVTEPL----LQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 55 ~~~~-v~v~nlp~~~t~~~----l~~~f~~~G-~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
++.| |||+|||.++++++ |+++|++|| .|.+| ..|+|||+|.+.++|.+|++.|+|..+.||+|+|.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4556 99999999999988 558999995 99888 228999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 014955 129 AYASGQRE 136 (415)
Q Consensus 129 ~~~~~~~~ 136 (415)
+..+....
T Consensus 81 A~~~sd~~ 88 (96)
T 2diu_A 81 TPKNRELC 88 (96)
T ss_dssp SCCSCCCC
T ss_pred cCCCccee
Confidence 98776543
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=120.66 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=70.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
..++|||+|||.++++++|+++|++||.|.+|.+.+ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 457899999999999999999999999999998875 45799999999999999999999999999999999986543
No 261
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=121.46 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCC---ceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
....++|||+|||.++++++|+++|+.||. |.++++++++. ++++|||||+|.+.++|++|++ +++..++|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345679999999999999999999999999 89999999965 9999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 014955 215 CNWATKG 221 (415)
Q Consensus 215 v~~a~~~ 221 (415)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 262
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=119.92 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCccc------CHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 014955 138 TSGHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 211 (415)
....++|||+|||..+ ++++|+++|+.||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446799999999998 789999999999999999988 35789999999999999999999999999999998
Q ss_pred -eEEEEEccCC
Q 014955 212 -QIRCNWATKG 221 (415)
Q Consensus 212 -~l~v~~a~~~ 221 (415)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 263
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=118.33 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.||.+ ++++++++ +++++|||||+|.+.++|++|++ +++..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999955 99999996 89999999999999999999995 799999999999998
Q ss_pred ccCCC
Q 014955 218 ATKGA 222 (415)
Q Consensus 218 a~~~~ 222 (415)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87644
No 264
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=2.8e-16 Score=124.87 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCC---ceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
....++|||+|||+++|+++|+++|+.||. |.++++++|+. |+++|||||+|.+.++|++|++ +++..++|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445679999999999999999999999999 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 014955 215 CNWATK 220 (415)
Q Consensus 215 v~~a~~ 220 (415)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 265
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=3e-16 Score=120.62 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+.+.++|||+|||.++++++|+++|+.||.|.+|++..++ .+|||||+|.+.++|.+|+..+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 4466889999999999999999999999999999998875 3689999999999999999876 5899999999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 266
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=116.24 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||.++++++|+++|+.||.| .++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 56656 678999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
|+.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 267
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=109.65 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=66.2
Q ss_pred cee-EEEccCCccCCHHH----HHHHHhhc-CCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 262 YTT-VYVGNLAPEVTQLD----LHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 262 ~~~-l~v~nlp~~~~~~~----L~~~F~~~-G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
..| |||+|||+.+++++ |+++|++| | .|.+|. .|+|||+|.+.++|.+|++.|+|. .+.||+|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG--~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~---~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGG--KVLSIT----GCSAILRFINQDSAERAQKRMENE---DVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTC--CEEECC----TTCEEEEESSHHHHHHHHHHHTTC---CSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCC--eeEEEe----cCEEEEEECCHHHHHHHHHHhcCC---ccCCceEEE
Confidence 345 99999999999988 55899999 6 888883 399999999999999999999999 999999999
Q ss_pred eeCCCCCCCC
Q 014955 336 SWGSKPTPPG 345 (415)
Q Consensus 336 ~~a~~~~~~~ 345 (415)
+|++......
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9999876543
No 268
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=5.3e-16 Score=122.82 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=74.3
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCe
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (415)
.....++|||+|||+.+++++|+++|+.|| .|.+|.+..+ +|||||+|.+.++|.+|++.|||. .++|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---DLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC---BSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCCe
Confidence 344568999999999999999999999999 8999999866 799999999999999999999999 99999
Q ss_pred eeEEeeCCCCCCC
Q 014955 332 QMKCSWGSKPTPP 344 (415)
Q Consensus 332 ~l~v~~a~~~~~~ 344 (415)
.|+|.|++.....
T Consensus 93 ~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 93 PISVDWCFVRGPP 105 (126)
T ss_dssp BCEEEESEESSSC
T ss_pred EEEEEEecCCCCC
Confidence 9999999765443
No 269
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=116.40 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=76.7
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 136 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
....+.++|||+|||.++++++|+++|+.| ..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345667899999999999999999999977 46778888888999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 014955 216 NWATKGAG 223 (415)
Q Consensus 216 ~~a~~~~~ 223 (415)
.|+.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=4.2e-16 Score=117.33 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=71.8
Q ss_pred CcceeEEEccCCccCCHHHHH----HHHhhcCCeeeEEEEEeC---CcceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~----~~F~~~G~~~i~~i~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
++.++|||+|||.++++++|+ ++|++|| .|.+|.+.+ .+|||||+|.+.++|.+|++.|||. .++|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF---PFYDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC---EECCcE
Confidence 455799999999999999999 9999999 899999884 4899999999999999999999999 999999
Q ss_pred eEEeeCCCCC
Q 014955 333 MKCSWGSKPT 342 (415)
Q Consensus 333 l~v~~a~~~~ 342 (415)
|+|.|++.+.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998653
No 271
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=119.39 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCC------CHHHHHHHHhccCCcceEEEeec--CCCceEEEEEecHHHHHHHHHHhCCccccCC-c
Q 014955 53 PSTCRSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-P 123 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~ 123 (415)
....++|||+|||..+ ++++|+++|++||.|.+|.+.+. +++|||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446789999999999 78999999999999999998843 3469999999999999999999999999998 9
Q ss_pred eeeecccccC
Q 014955 124 IKVNWAYASG 133 (415)
Q Consensus 124 l~v~~~~~~~ 133 (415)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999986543
No 272
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=3.3e-16 Score=119.82 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=68.4
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEe--CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..+|||+|||+++++++|+++|+.||. .|..+.+. +.+|||||+|.+.++|.+|++.|||. .++|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~---~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI---EFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE---EETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 478999999999999999999999982 47777775 45899999999999999999999999 9999999999987
Q ss_pred CC
Q 014955 340 KP 341 (415)
Q Consensus 340 ~~ 341 (415)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 273
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.8e-16 Score=114.98 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=69.2
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
.++|||+|||.++++++|+++|+.|| .|.++++.++ +|+|||+|.+.++|.+|+ .|||. .+.|+.|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~---~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES---LFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC--CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC---EECCcEEEE
Confidence 36899999999999999999999999 8999998865 789999999999999999 99999 999999999
Q ss_pred eeCCCC
Q 014955 336 SWGSKP 341 (415)
Q Consensus 336 ~~a~~~ 341 (415)
.|++.+
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 999864
No 274
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=124.51 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
...+.++|||+|||.++++++|+++|++||.|.+|++..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45577899999999999999999999999999999998864 46899999999999999999999999999999998
Q ss_pred cc
Q 014955 128 WA 129 (415)
Q Consensus 128 ~~ 129 (415)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 275
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2.6e-15 Score=116.75 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=68.1
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcce-EEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeCC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGS 339 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a~ 339 (415)
..|||+||++.+++++|+++|++|| .|.+|++.+..|+ |||+|.+.++|..|++.|||. .|.| ++|+|.|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~---~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGA---DIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTC---CCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCeEEEEEEec
Confidence 3468999999999999999999999 8999988766796 999999999999999999999 8877 699999998
Q ss_pred CCC
Q 014955 340 KPT 342 (415)
Q Consensus 340 ~~~ 342 (415)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 276
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=2.5e-16 Score=118.61 Aligned_cols=81 Identities=19% Similarity=0.421 Sum_probs=72.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhccCCcceEEEeec-CCCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
..++++|||+|||.++++++|+ ++|++||.|.+|.+... +.+|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999 99999999999998753 346899999999999999999999999999999999
Q ss_pred cccccC
Q 014955 128 WAYASG 133 (415)
Q Consensus 128 ~~~~~~ 133 (415)
++.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 987654
No 277
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=7e-16 Score=118.35 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=71.1
Q ss_pred CCCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCee
Q 014955 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 332 (415)
...+.++|||+|||+.+++++|+++|+.|| .|.+|.+.++ +|+|||+|.+.++|.+|++.|||. .+.|+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 99 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV---PLDGRP 99 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EeCCcE
Confidence 344568999999999999999999999999 8999999854 789999999999999999999999 999999
Q ss_pred eEEeeCC
Q 014955 333 MKCSWGS 339 (415)
Q Consensus 333 l~v~~a~ 339 (415)
|+|.|++
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999975
No 278
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.8e-16 Score=117.19 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=70.6
Q ss_pred CCcceeEEEccCCc-cCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 259 NPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 259 ~~~~~~l~v~nlp~-~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
.++.++|||+|||+ .+++++|+++|++|| .|.+|.+. +|||||+|.+.++|.+|++.|||. .+.|++|+|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIECESQE---MNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTC--CCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS---SCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---eeCCcEEEEEE
Confidence 34568999999998 999999999999999 89999986 789999999999999999999999 89999999999
Q ss_pred CCCCCC
Q 014955 338 GSKPTP 343 (415)
Q Consensus 338 a~~~~~ 343 (415)
++....
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876544
No 279
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=7.6e-16 Score=120.15 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCce-EEEEEecHHHHHHHHHHhCCccccC--Cceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (415)
++...+|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4456778999999999999999999999999999887754 566 9999999999999999999999998 88999998
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7654
No 280
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=114.05 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+.++|||+|| ++++++|+++|++||.|.+|.+. +.+|||||+|.+.++|.+|+..||+..+.|+.|+|.|+.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 446689999996 89999999999999999999984 55689999999999999999999999999999999999776
Q ss_pred CCC
Q 014955 133 GQR 135 (415)
Q Consensus 133 ~~~ 135 (415)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 281
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=120.35 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=71.2
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
..++|||+|||..+++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.|||. .++|+.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG--PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR---EFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS--CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB---SCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC--CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCCcEEE
Confidence 457899999999999999999999999 8999988765 699999999999999999999999 89999999
Q ss_pred EeeCCCCC
Q 014955 335 CSWGSKPT 342 (415)
Q Consensus 335 v~~a~~~~ 342 (415)
|.|++...
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998654
No 282
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=113.99 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=65.2
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhccCCcceEEEeec--CCCceEEEEEecHHHHHHHHHHhCCccccCC-ceee
Q 014955 56 CRSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-PIKV 126 (415)
Q Consensus 56 ~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~l~v 126 (415)
+++|||+|||..+ ++++|+++|++||.|.+|++.+. +++|||||+|.+.++|.+|+..|||..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 78999999999999999998753 3469999999999999999999999999999 8887
Q ss_pred e
Q 014955 127 N 127 (415)
Q Consensus 127 ~ 127 (415)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 283
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=3.1e-16 Score=117.58 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
+.++|||+|||.++++++|+++|++||.|.+++++.++. +|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457899999999999999999999999999888887543 5899999999999999999999999999999999864
No 284
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=120.93 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCc-ceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+.+.++|||+|||+++++++|+++|+.||.| .+|+++.++ .+|||||+|.+.++|.+|+.. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567889999999999999999999999999 899998865 468999999999999999976 99999999999998
Q ss_pred cccc
Q 014955 129 AYAS 132 (415)
Q Consensus 129 ~~~~ 132 (415)
+..+
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 285
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=115.14 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34567899999999999999999999999999999988753 5899999999999999997 57889999999999
Q ss_pred ccccCCC
Q 014955 129 AYASGQR 135 (415)
Q Consensus 129 ~~~~~~~ 135 (415)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9776543
No 286
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.9e-15 Score=116.49 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=69.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCce-EEEEEecHHHHHHHHHHhCCccccC--Cceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (415)
++....|||+||++.+++++|+++|++||.|.+|+++.. +|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 344456789999999999999999999999999999763 486 9999999999999999999999988 58999998
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7664
No 287
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=113.50 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+...++|||+|||.++++++|+++|+.| .|.+|+++.+.. +|||||+|.+.++|.+|+. +|+..+.|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456889999999999999999999999 999999988743 5899999999999999999 9999999999999998
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 6653
No 288
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.8e-16 Score=111.45 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+|||+|||.++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|++|++ +|+..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999998765 36899999999999999997 9999999999999874
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-17 Score=121.99 Aligned_cols=84 Identities=30% Similarity=0.486 Sum_probs=76.2
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.||.|.. .++.++.++.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999988 666676788999999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 014955 218 ATKGAG 223 (415)
Q Consensus 218 a~~~~~ 223 (415)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 977543
No 290
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=123.87 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||.++++++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|.+|++ +++..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999986666676789999999999999999999999 999999999999999
Q ss_pred ccC
Q 014955 218 ATK 220 (415)
Q Consensus 218 a~~ 220 (415)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 865
No 291
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.5e-16 Score=113.60 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=71.3
Q ss_pred eEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 143 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
+|||+|||.++++++|+++|+.||.|.++.+.+++.++.++|||||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999998 5899999999999875
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=114.52 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=67.1
Q ss_pred ceEEEcCCCccc------CHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-eEE
Q 014955 142 FNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIR 214 (415)
Q Consensus 142 ~~l~v~nlp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 214 (415)
++|||+|||..+ ++++|+++|+.||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999998 679999999999999999987 35789999999999999999999999999999999 887
Q ss_pred E
Q 014955 215 C 215 (415)
Q Consensus 215 v 215 (415)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 293
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.8e-16 Score=117.62 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
++|||+|||.++++++|+++|+.||.|.+|++..++ ++|||||+|.+.+ |.+|+..||+..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999998865 3689999999999 99999999999999999999998765
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 294
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.7e-16 Score=119.37 Aligned_cols=81 Identities=17% Similarity=0.398 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+.. ++..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345889999999999999999999999999999999875 368999999999999999987 999999999999999
Q ss_pred cccCCC
Q 014955 130 YASGQR 135 (415)
Q Consensus 130 ~~~~~~ 135 (415)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876543
No 295
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=112.43 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
++|||+|||.++++++|+++|++||.|.+|.+..++ ++|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999998865 36899999999999999999998 9999999999876
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.6e-16 Score=126.75 Aligned_cols=123 Identities=14% Similarity=0.096 Sum_probs=73.9
Q ss_pred ceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccCCCCCCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEe
Q 014955 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 95 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (415)
++||.+|.-++.+..++..... ...|...--.... ..........++|||+|||.++++++|+++|+.|| |.+|.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g~-~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSGD-SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchh-ccCCCCCCCCCCC-cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 4677778777776666544322 2333322111111 11122334567999999999999999999999999 6799999
Q ss_pred ecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCCC
Q 014955 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (415)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 222 (415)
+|+. ++++|||||+|.+.++|++|+ .+++..+.|+.|+|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9965 999999999999999999999 689999999999999887654
No 297
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=117.66 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=67.7
Q ss_pred CcceEEE--cCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccc-----cCCceeee
Q 014955 55 TCRSVYV--GNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL-----FGQPIKVN 127 (415)
Q Consensus 55 ~~~~v~v--~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-----~g~~l~v~ 127 (415)
+.++||| +||+.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .|++|.|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 4678999 779999999999999999999999988754 58999999999999999999999987 57888888
Q ss_pred ccccc
Q 014955 128 WAYAS 132 (415)
Q Consensus 128 ~~~~~ 132 (415)
++...
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 87543
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=6e-16 Score=120.67 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCC---cceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
..+.++|||+|||+++|+++|+++|+.||. |.+|+++.++. +|||||+|.+.++|.+|++ +|+..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345688999999999999999999999999 89999988753 6899999999999999998 9999999999999
Q ss_pred ecccc
Q 014955 127 NWAYA 131 (415)
Q Consensus 127 ~~~~~ 131 (415)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87743
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=115.20 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcce-EEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
....++|||+|||+++++++|+++|+.||.|.+ |.++.+. .+|||||+|.+.++|.+|+.. ++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345688999999999999999999999999987 8787653 368999999999999999987 99999999999988
Q ss_pred ccccC
Q 014955 129 AYASG 133 (415)
Q Consensus 129 ~~~~~ 133 (415)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76543
No 300
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=116.20 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=72.2
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
...+|||+|||.++++++|+++|+.| .|.++.|++|+. |+++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34799999999999999999999999 899999999964 999999999999999999999 599999999999998875
Q ss_pred C
Q 014955 220 K 220 (415)
Q Consensus 220 ~ 220 (415)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 301
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=116.19 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=69.9
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeee----EEEEEe--CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI----EEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i----~~i~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.+.++|||+|||.++++++|+++|+.|| .| ..+++. +.+|||||+|.+.++|.+|++.|||. .++|+.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQ--EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY---KLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHH--HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC---BCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC---EeCCcEE
Confidence 4558999999999999999999999999 55 444444 44799999999999999999999999 8999999
Q ss_pred EEeeCCCCCCC
Q 014955 334 KCSWGSKPTPP 344 (415)
Q Consensus 334 ~v~~a~~~~~~ 344 (415)
+|.|++.+...
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 302
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=119.63 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=75.8
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCC---ceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (415)
+....++|||+|||+++++++|+++|+.||. |.++.+++++. |+++|||||+|.+.++|.+|++ +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3455679999999999999999999999988 89999999976 9999999999999999999999 99999999999
Q ss_pred EEEEccC
Q 014955 214 RCNWATK 220 (415)
Q Consensus 214 ~v~~a~~ 220 (415)
+|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998865
No 303
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.6e-16 Score=116.06 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+...++|||+|||+++|++||+++|+.||.+ +|+++.+++ +|||||+|.+.++|++|+ .+|+..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 4566889999999999999999999999955 999988753 589999999999999999 57999999999999887
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 304
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=6.1e-16 Score=135.06 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=76.6
Q ss_pred CcceEEEcCCCcccCHHHHHHHhcCCC--CceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 140 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
..++|||+||+.++++++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 014955 218 ATK 220 (415)
Q Consensus 218 a~~ 220 (415)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 305
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.4e-15 Score=112.07 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=69.4
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 341 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 341 (415)
.++|||+|||+++++++|+++|++| .|.++++.+.+|||||+|.+.++|.+|++.|||. .++|++|+|.|+...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY---SFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE---EETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC---eECCcEEEEEEcCCC
Confidence 3689999999999999999999999 4788888888999999999999999999999999 999999999998765
Q ss_pred C
Q 014955 342 T 342 (415)
Q Consensus 342 ~ 342 (415)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 306
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=114.90 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=73.5
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 137 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...+.++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2467899999999999999999999999999999999999
Q ss_pred EccCCCC
Q 014955 217 WATKGAG 223 (415)
Q Consensus 217 ~a~~~~~ 223 (415)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9977543
No 307
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=6.7e-16 Score=113.81 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
.+++|||+|||+++++++|+++|++| .|.+|++. +.+|||||+|.+.++|.+|++.||+..+.|+.|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 46789999999999999999999999 99999884 66789999999999999999999999999999999998554
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=116.22 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
..+.++|||+|||.++++++|+++|+.||.|..+ ....+.+|||||+|.+.++|.+|+..||+..+.|+.|+|.++.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3467899999999999999999999999998777 333345789999999999999999999999999999999998765
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 309
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-15 Score=115.93 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=70.1
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCcccc------
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYL------ 328 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~------ 328 (415)
...++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++.|||. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK---FIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC---CCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EEcCCccc
Confidence 3457899999999999999999999999 8999999875 789999999999999999999999 78
Q ss_pred --CCeeeEEeeCCCC
Q 014955 329 --FGKQMKCSWGSKP 341 (415)
Q Consensus 329 --~g~~l~v~~a~~~ 341 (415)
.+++|.|.|++++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 6888999999854
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=111.95 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=67.9
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcc-eEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
.++|||+|||+++++++|+++|+.|| .|.+|.+.+..+ ||||+|.+.++|.+|++ |||. .++|+.|+|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~---~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFG--PVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQH---SLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTS--CEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCC---EETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCe---EECCEEEEEEECCc
Confidence 46899999999999999999999999 888885444433 99999999999999999 9999 99999999999876
Q ss_pred CCCC
Q 014955 341 PTPP 344 (415)
Q Consensus 341 ~~~~ 344 (415)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 311
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=112.34 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCc-eEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g-~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
...++|||+|||.++++++|+++|+.||.|.+| +.++.++ ||||+|.+.++|.+|+. ||+..+.|+.|.|.++..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 456789999999999999999999999999987 3333222 99999999999999999 9999999999999988655
Q ss_pred C
Q 014955 133 G 133 (415)
Q Consensus 133 ~ 133 (415)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 312
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=2.2e-15 Score=122.04 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=68.7
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC--cceEEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEee
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSW 337 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~ 337 (415)
..+|||+||++.+++++|+++|++|| .|.+|.+..+ +|||||+|.+.++|.+|++.|||. .|.| ++|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG--~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~---~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHS--CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTB---CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCcEEEEEE
Confidence 35789999999999999999999999 8999998643 679999999999999999999999 8855 9999999
Q ss_pred CCCCC
Q 014955 338 GSKPT 342 (415)
Q Consensus 338 a~~~~ 342 (415)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98753
No 313
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=120.35 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+.++|||+|||+++++++|+++|+.||.|.++.++.+. .+|||||+|.+.++|.+|+. +|+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456889999999999999999999999999885554432 36899999999999999998 999999999999998
Q ss_pred ccc
Q 014955 129 AYA 131 (415)
Q Consensus 129 ~~~ 131 (415)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 314
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=3e-15 Score=116.75 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=68.4
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-cce-EEEEeCCHHHHHHHHHHhcCCCccccCC--eeeEEeeC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWG 338 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~~a 338 (415)
..|||+||++.+|+++|+++|++|| .|.+|++.++ +|+ |||+|.+.++|.+|++.|||. .+.| ++|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~---~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTC---EEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCC---eecCCCcEEEEEec
Confidence 5688999999999999999999999 8999988654 677 999999999999999999999 8888 99999999
Q ss_pred CCCC
Q 014955 339 SKPT 342 (415)
Q Consensus 339 ~~~~ 342 (415)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8654
No 315
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=115.78 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred ceEEEcCC----CcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcC----HHH----HHHHHH--HhCCce
Q 014955 142 FNIFVGDL----SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN----QQD----AQSAIN--DLTGKW 207 (415)
Q Consensus 142 ~~l~v~nl----p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 207 (415)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeeEEEEEccC
Q 014955 208 LGSRQIRCNWATK 220 (415)
Q Consensus 208 ~~g~~l~v~~a~~ 220 (415)
++|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 316
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=116.99 Aligned_cols=78 Identities=9% Similarity=-0.002 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCC---cceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++ .+|||||+|.+.++|.+|+. +|+..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 446788999999999999999999999988 8999998865 46899999999999999998 9999999999999
Q ss_pred ecccc
Q 014955 127 NWAYA 131 (415)
Q Consensus 127 ~~~~~ 131 (415)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 88754
No 317
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1e-15 Score=121.61 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCC---cceEEEeecCC---CceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~---~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
..+.++|||+|||+++|+++|+++|+.||. |.+|+++.++. +|||||+|.+.++|++|++ +|+..+.|+.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 446688999999999999999999999999 89999988753 6899999999999999998 9999999999999
Q ss_pred ecccc
Q 014955 127 NWAYA 131 (415)
Q Consensus 127 ~~~~~ 131 (415)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 87643
No 318
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=5.2e-17 Score=126.61 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=79.9
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
..+.++|||+|||.++++++|+++|+.||.|.+ +.+..++.++.++|||||+|.+.++|.+|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345679999999999999999999999999998 899999888999999999999999999999999999999
Q ss_pred CeeEEEEEccCCCC
Q 014955 210 SRQIRCNWATKGAG 223 (415)
Q Consensus 210 g~~l~v~~a~~~~~ 223 (415)
|+.|+|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999977544
No 319
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.2e-15 Score=122.92 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=71.7
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeee
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 333 (415)
.+.++|||+|||.++++++|+++|+.|| .|.+|.+.++ +|||||+|.+.++|.+|++.||+. .|+|+.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT---RLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 4458999999999999999999999999 8999999754 589999999999999999999999 9999999
Q ss_pred EEeeCCCCC
Q 014955 334 KCSWGSKPT 342 (415)
Q Consensus 334 ~v~~a~~~~ 342 (415)
+|.|++...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998643
No 320
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=110.63 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEE-EeCC--cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-VQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~-~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
..++|||+|||+++++++|+++|+.|| .|.+++ +..+ .+.|||+|.+.++|.+|+..|||. .++|++|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF---QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS--CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEE
Confidence 447899999999999999999999999 899994 7765 456999999999999999999999 99999999999
Q ss_pred CCCC
Q 014955 338 GSKP 341 (415)
Q Consensus 338 a~~~ 341 (415)
+++.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9875
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6e-15 Score=112.03 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=68.1
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEe---CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
..+.++|||+|||.++++++|+++|+.|+ .+..+... +.+|||||+|.+.++|.+|++.||+. .+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG---EIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC---eECCeEEEE
Confidence 34458899999999999999999999886 44444322 12699999999999999999999999 999999999
Q ss_pred eeCCCCCCC
Q 014955 336 SWGSKPTPP 344 (415)
Q Consensus 336 ~~a~~~~~~ 344 (415)
.|++.+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876543
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=8.5e-16 Score=116.77 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 218 (415)
...++|||+|||.++++++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 89999999999999999999998 999999999999998
Q ss_pred cCCCC
Q 014955 219 TKGAG 223 (415)
Q Consensus 219 ~~~~~ 223 (415)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=3.9e-15 Score=115.52 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=67.0
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCee-----eEE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-----MKC 335 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~-----l~v 335 (415)
..++|||+|||+++++++|+++|++|| .|.+|.+..+ |||||+|.+.++|.+|++.|||. .++|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC---BCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC---EECCcEeeeEEEEe
Confidence 347899999999999999999999999 9999999988 99999999999999999999999 999998 677
Q ss_pred eeCCCC
Q 014955 336 SWGSKP 341 (415)
Q Consensus 336 ~~a~~~ 341 (415)
...+..
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 666543
No 324
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=2.7e-15 Score=118.36 Aligned_cols=76 Identities=28% Similarity=0.470 Sum_probs=69.8
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
.++|||+|||.++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|+ .|||. .++|+.|+|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCG--SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET---VFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTS--CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC---eECCeEEEE
Confidence 47899999999999999999999999 8999998764 789999999999999999 79999 999999999
Q ss_pred eeCCCCCC
Q 014955 336 SWGSKPTP 343 (415)
Q Consensus 336 ~~a~~~~~ 343 (415)
.|++...+
T Consensus 110 ~~a~~~~~ 117 (124)
T 2jwn_A 110 LPKRTNMP 117 (124)
T ss_dssp EESSCCCS
T ss_pred EECCCCCC
Confidence 99986443
No 325
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=115.24 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (415)
.+.++|||+|||++++++||+++|+.| .|.+|+++.++ .+|||||+|.+.++|.+|+ .+|+..+.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345789999999999999999999999 88999998865 4799999999999999999 699999999999997764
Q ss_pred c
Q 014955 131 A 131 (415)
Q Consensus 131 ~ 131 (415)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 326
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=118.76 Aligned_cols=80 Identities=23% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCc----eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSC----SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 214 (415)
....+|||+|||+++++++|+++|+.||.| .+|.|+.+ .+|+++|||||+|.+.++|.+|++. ++..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345799999999999999999999999875 68999988 5899999999999999999999985 99999999999
Q ss_pred EEEccC
Q 014955 215 CNWATK 220 (415)
Q Consensus 215 v~~a~~ 220 (415)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 327
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=6.5e-15 Score=111.59 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=66.6
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEE-----EEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-----VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 335 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~-----i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 335 (415)
..++|||+|||+++++++|+++|+.|| .|.. ....+.+|||||+|.+.++|.+|++ |||. .+.|+.|+|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~---~~~g~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELF--AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL---KVFGNEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHH--HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC---CBTTBCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc---EECCcEEEE
Confidence 457999999999999999999999999 4433 3444568999999999999999999 9999 999999999
Q ss_pred eeCCCCC
Q 014955 336 SWGSKPT 342 (415)
Q Consensus 336 ~~a~~~~ 342 (415)
.|++.+.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9998654
No 328
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=2e-15 Score=117.12 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
..++|||+|||.++++++|+++|+.||.|.+|.++.+ |||||+|.+.++|.+|++.||+..|.|+.|++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 4578999999999999999999999999999999877 899999999999999999999999999984443
No 329
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.4e-15 Score=110.67 Aligned_cols=72 Identities=25% Similarity=0.539 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcc----C-------CcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
.+.++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 467899999999999999999999999 8 8999988766 589999999999999999 9999999999
Q ss_pred ceeeec
Q 014955 123 PIKVNW 128 (415)
Q Consensus 123 ~l~v~~ 128 (415)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999874
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=4.1e-15 Score=124.36 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 217 (415)
....++|||+|||..+++++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 014955 218 ATKG 221 (415)
Q Consensus 218 a~~~ 221 (415)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8753
No 331
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1.2e-15 Score=108.91 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=65.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+|||+|||.++++++|+++|++||.|.+|.+..++ ++|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998764 36899999999999999997 5889999999999864
No 332
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.7e-15 Score=115.88 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=71.1
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
.+.++|||+|+ ++++++|+++|+.|| .|.+|.+.+.+|||||+|.+.++|.+|++.|||. .++|+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~---~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC---BCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEEeC
Confidence 34579999995 699999999999999 8999999999999999999999999999999999 9999999999998
Q ss_pred CCCC
Q 014955 340 KPTP 343 (415)
Q Consensus 340 ~~~~ 343 (415)
.+..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7543
No 333
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=3.5e-15 Score=109.93 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=61.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccc--cCCceeeecccc
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWAYA 131 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~ 131 (415)
.+..+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ +++..+ .|+.|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 35578999999999999999999999999999999885 67999999999999983 455554 588999988865
Q ss_pred cC
Q 014955 132 SG 133 (415)
Q Consensus 132 ~~ 133 (415)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-14 Score=120.83 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
...+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999998864 468999999999999999999999999999999999
Q ss_pred ccccC
Q 014955 129 AYASG 133 (415)
Q Consensus 129 ~~~~~ 133 (415)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 335
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=6e-15 Score=115.25 Aligned_cols=78 Identities=27% Similarity=0.343 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeeccccc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (415)
+.+.++|||+|+ ++++++|+++|+.||.|.+|.+. +.+|||||+|.+.++|.+|+..||+..+.|+.|+|.|+...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 456789999995 79999999999999999999986 55689999999999999999999999999999999998766
Q ss_pred CC
Q 014955 133 GQ 134 (415)
Q Consensus 133 ~~ 134 (415)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=8.8e-16 Score=146.64 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=71.3
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC------cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
+.++|||+|||+.+|+++|+++|+.|| .|..|.|..+ +|||||+|.+.++|..|+..|||. .|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYG--PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK---KIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC---EECCEEEE
Confidence 457899999999999999999999999 8999998764 799999999999999999999999 99999999
Q ss_pred EeeCCCCC
Q 014955 335 CSWGSKPT 342 (415)
Q Consensus 335 v~~a~~~~ 342 (415)
|.|++...
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998643
No 337
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=4e-15 Score=128.96 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=70.7
Q ss_pred cceeEEEccCCccC---------CHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCcccc---
Q 014955 261 QYTTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL--- 328 (415)
Q Consensus 261 ~~~~l~v~nlp~~~---------~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--- 328 (415)
..++|||+||+..+ ++++|+++|++|| .|.+|++.+++|||||+|.+.++|..|++.|+|. .+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~---~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ---TLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC---CCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC---EEecc
Confidence 45799999999998 7999999999999 9999999999999999999999999999999999 78
Q ss_pred ---------CCeeeEEeeCCCCCC
Q 014955 329 ---------FGKQMKCSWGSKPTP 343 (415)
Q Consensus 329 ---------~g~~l~v~~a~~~~~ 343 (415)
.|+.|.|.|++....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 338
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.4e-15 Score=117.52 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCce--EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
...++|||+|||+++++++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|.+|++ +++..++|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 455789999999999999999999999 677 899999976 9999999999999999999998 57899999999998
Q ss_pred EccC
Q 014955 217 WATK 220 (415)
Q Consensus 217 ~a~~ 220 (415)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=7.8e-15 Score=108.06 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=62.7
Q ss_pred CCcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 259 ~~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
.++.++|||+|||+++++++|+++|++|| .|.+|++.++ ||||||+|.+.++|.+ +++.. ..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G--~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYG--EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED-LIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEEE
Confidence 34557999999999999999999999999 9999999875 8999999999999983 56651 145699999999
Q ss_pred CCCCC
Q 014955 338 GSKPT 342 (415)
Q Consensus 338 a~~~~ 342 (415)
++.+.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87643
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=110.73 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecccccC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (415)
.++++|||+|||.++++++|+++|+.||.|.+|++..+ .+|||||+|.+.++|++++. ....+.|+.|+|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 35688999999999999999999999999999999876 66899999999999976432 1334578999999887665
Q ss_pred CC
Q 014955 134 QR 135 (415)
Q Consensus 134 ~~ 135 (415)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=1.1e-14 Score=107.08 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=67.1
Q ss_pred cceeEEEccCCccCCHHHHHHHHhhc----CC-----eeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCe
Q 014955 261 QYTTVYVGNLAPEVTQLDLHRHFHSL----GA-----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (415)
Q Consensus 261 ~~~~l~v~nlp~~~~~~~L~~~F~~~----G~-----~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 331 (415)
+.++|||+|||+++++++|+++|+.| |. ..|.++++.+++|||||+|.+.++|.+|+ .|||. .++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~---~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI---IFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC---EECCe
Confidence 44789999999999999999999999 61 16899999999999999999999999999 99999 99999
Q ss_pred eeEEee
Q 014955 332 QMKCSW 337 (415)
Q Consensus 332 ~l~v~~ 337 (415)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=121.57 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=73.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEE--E---eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR--V---MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 138 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~--~---~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
..++++|||+|||.++++++|+++|+.||.|..+. + ++...++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44567999999999999999999999999997741 1 111246899999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 014955 213 IRCNWATKGAG 223 (415)
Q Consensus 213 l~v~~a~~~~~ 223 (415)
|+|.|+.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=2.2e-15 Score=120.10 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
+...++|||+|||+++|++||+++|+.|| |.+|+++.++ ++|||||+|.+.++|++|+ .+|+..+.|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 44567899999999999999999999999 6699998865 4689999999999999999 78999999999999887
Q ss_pred cccC
Q 014955 130 YASG 133 (415)
Q Consensus 130 ~~~~ 133 (415)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.7e-14 Score=108.21 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCc-----ccCHHHHHHHhcCCCCceEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 014955 139 SGHFNIFVGDLSP-----EVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (415)
Q Consensus 139 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 212 (415)
.++++|+|.||.. +-++++|+++|++||.|.++.|.+++.+ ++++||+||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2368999999999999999999988653 688999999999999999999999999999999
Q ss_pred EEEEEccC
Q 014955 213 IRCNWATK 220 (415)
Q Consensus 213 l~v~~a~~ 220 (415)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-15 Score=115.31 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCc----ceEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
.+.++|||+|||+++|++||+++|+.||.| .+|.++.++ .+|||||+|.+.++|.+|++. |+..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356789999999999999999999999975 689998764 358999999999999999985 999999999999
Q ss_pred eccc
Q 014955 127 NWAY 130 (415)
Q Consensus 127 ~~~~ 130 (415)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7653
No 346
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.6e-16 Score=121.83 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcce--------EEEeecC----CCceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
.+.++|||+|||.++++++|+++|+.||.|.+ |++..++ .+|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45688999999999999999999999999998 8888764 36899999999999999999999999999
Q ss_pred CceeeecccccCCC
Q 014955 122 QPIKVNWAYASGQR 135 (415)
Q Consensus 122 ~~l~v~~~~~~~~~ 135 (415)
+.|+|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998776543
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=7e-15 Score=119.03 Aligned_cols=79 Identities=30% Similarity=0.423 Sum_probs=68.4
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEE--------EEE---eCCcceEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------VRV---QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~--------i~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (415)
.+.++|||+|||+.+++++|+++|+.|| .|.. +++ .+.+|||||+|.+.++|.+|+..|||. .+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~---~~ 117 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYV--DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY---VL 117 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGC--CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB---EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC---Ee
Confidence 3457899999999999999999999999 5443 433 356899999999999999999999999 99
Q ss_pred CCeeeEEeeCCCCCC
Q 014955 329 FGKQMKCSWGSKPTP 343 (415)
Q Consensus 329 ~g~~l~v~~a~~~~~ 343 (415)
.|+.|+|.|++...+
T Consensus 118 ~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 FGKPMVVQFARSARP 132 (143)
T ss_dssp TTEECEEEECCCSCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999976543
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=2.7e-14 Score=121.24 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHh--CCccccCCceeeecccccCCCC------CCCCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEe
Q 014955 103 DRRSAAMAILSL--NGRHLFGQPIKVNWAYASGQRE------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (415)
Q Consensus 103 ~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (415)
+.+.+..|+... ....+.+...+|........+. .....++|||+|||.++++++|+++|+.||.|.++++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 556677777765 4445556555665442211111 11235799999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEccCC
Q 014955 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (415)
Q Consensus 175 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 221 (415)
++. ++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 5899999999999999999999854 56999999999987654
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=1e-14 Score=113.99 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhccCCcc--eEEEeecC---CCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--~v~~~~~~---~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
+...++|||+|||+++|+++|+++|+.| .|. +|+++.++ .+|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 3456789999999999999999999999 566 89988764 47999999999999999997 47799999999998
Q ss_pred cccc
Q 014955 128 WAYA 131 (415)
Q Consensus 128 ~~~~ 131 (415)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7654
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=107.52 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=64.7
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 340 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 340 (415)
.++|||+|||.++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+| ++.. ..+.|++|+|.|++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPKPFRAFAFVTFADDQIAQSL----CGED-LIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEECCSSCCSCCEEECSCHHHHHHT----TTCE-EEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEEecCCCCEEEEEECCHHHHHHH----hcCC-ceeCCEEEEEEecCC
Confidence 47899999999999999999999999 8999999876 89999999999999754 4441 156899999999986
Q ss_pred CCC
Q 014955 341 PTP 343 (415)
Q Consensus 341 ~~~ 343 (415)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=9.9e-15 Score=127.38 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=70.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccC--CcceEEEeecCC----CceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++. +|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999998853 58999999999999999999999999999999998
Q ss_pred ccc
Q 014955 129 AYA 131 (415)
Q Consensus 129 ~~~ 131 (415)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=109.15 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCC---CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 014955 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (415)
Q Consensus 139 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 215 (415)
...++|||+|||.++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567999999999999999999999999999 888877766 7999999999999999999999883 366666666
Q ss_pred EEc
Q 014955 216 NWA 218 (415)
Q Consensus 216 ~~a 218 (415)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=3.9e-14 Score=107.37 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCC-----CCCHHHHHHHHhccCCcceEEEeecC-----CCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 53 PSTCRSVYVGNIHT-----QVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 53 ~~~~~~v~v~nlp~-----~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
+.++++|+|.||.. +-++++|++.|++||.|.+|++..++ ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999973 23789999999999999999998753 479999999999999999999999999999
Q ss_pred ceeeecccc
Q 014955 123 PIKVNWAYA 131 (415)
Q Consensus 123 ~l~v~~~~~ 131 (415)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998854
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1e-13 Score=106.90 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCCcceEEEcCCCCCCC-----------HHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc
Q 014955 52 DPSTCRSVYVGNIHTQVT-----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (415)
Q Consensus 52 ~~~~~~~v~v~nlp~~~t-----------~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 120 (415)
.+.++++|+|.||..... +++|+++|++||.|.+|.+.....+|||||+|.+.++|.+|+..|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 355788999999954332 689999999999999997744446799999999999999999999999999
Q ss_pred CCceeeecccccCC
Q 014955 121 GQPIKVNWAYASGQ 134 (415)
Q Consensus 121 g~~l~v~~~~~~~~ 134 (415)
|+.|+|.++.+...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999876543
No 355
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=1.1e-14 Score=110.62 Aligned_cols=76 Identities=22% Similarity=0.477 Sum_probs=68.9
Q ss_pred CcceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
...++|||+|||+++++++|+++|+.|| .|.+|++.++ +|||||+|.+.++|.+|++ ++. .++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~---~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQI---NFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCC---EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCC---eECCEEEE
Confidence 3458999999999999999999999999 8999999874 6999999999999999999 888 89999999
Q ss_pred EeeCCCCC
Q 014955 335 CSWGSKPT 342 (415)
Q Consensus 335 v~~a~~~~ 342 (415)
|.++....
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99986543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.9e-14 Score=123.61 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccc----
Q 014955 53 PSTCRSVYVGNIHTQV---------TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL---- 119 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---- 119 (415)
...+++|||+||+..+ +|++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4467899999999998 79999999999999999999875 48999999999999999999999999
Q ss_pred --------cCCceeeecccccC
Q 014955 120 --------FGQPIKVNWAYASG 133 (415)
Q Consensus 120 --------~g~~l~v~~~~~~~ 133 (415)
.|+.|.|.|+....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=108.73 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeec-------CCCceEEEEEecHHHHHHHHHHhCCccccCCceee
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~-------~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (415)
...++|||+|||+++++++|+++|++||.|. +.++.+ +.+|||||+|.+.++|.+|++.++ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568899999999999999999999999998 777664 346899999999999999999883 355666655
Q ss_pred ec
Q 014955 127 NW 128 (415)
Q Consensus 127 ~~ 128 (415)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=3.2e-13 Score=102.38 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCcceEEEcCC--CcccC--------HHHHHHHhcCCCCceEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCc
Q 014955 139 SGHFNIFVGDL--SPEVT--------DATLFACFSVYPSCSDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGK 206 (415)
Q Consensus 139 ~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~ 206 (415)
.++++|.+.|+ |..+. +++|++.|++||.|.++.|.+++.+ +.++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888888 33333 3689999999999999999988654 368999999999999999999999999
Q ss_pred eeCCeeEEEEEccC
Q 014955 207 WLGSRQIRCNWATK 220 (415)
Q Consensus 207 ~~~g~~l~v~~a~~ 220 (415)
.++||.|+|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-13 Score=105.43 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=65.4
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhccCCcceEEEeecCC----CceEEEEEec----HHH----HHHHHH--HhCCcc
Q 014955 57 RSVYVGNI----HTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFD----RRS----AAMAIL--SLNGRH 118 (415)
Q Consensus 57 ~~v~v~nl----p~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~afV~f~~----~~~----A~~a~~--~l~~~~ 118 (415)
..|||+|| |+.+++++|+++|+.||.|.+|+++.|+. +|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 99999999999999999999999999985 4899999996 434 788988 789999
Q ss_pred ccCCceeeeccc
Q 014955 119 LFGQPIKVNWAY 130 (415)
Q Consensus 119 ~~g~~l~v~~~~ 130 (415)
|.|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-12 Score=100.85 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred CcceeEEEccCCccC-----------CHHHHHHHHhhcCCeeeEEEEEeC--CcceEEEEeCCHHHHHHHHHHhcCCCcc
Q 014955 260 PQYTTVYVGNLAPEV-----------TQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSS 326 (415)
Q Consensus 260 ~~~~~l~v~nlp~~~-----------~~~~L~~~F~~~G~~~i~~i~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 326 (415)
.+.++|+|.||.... ++++|+++|++|| .|.+|.+.. .+|||||+|.+.++|.+|+..|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~--- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR--- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC---
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC---
Confidence 345899999994432 2589999999999 899987753 3799999999999999999999999
Q ss_pred ccCCeeeEEeeCCCCC
Q 014955 327 YLFGKQMKCSWGSKPT 342 (415)
Q Consensus 327 ~~~g~~l~v~~a~~~~ 342 (415)
.++|++|+|.|+....
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987654
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=8.9e-13 Score=111.86 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=66.4
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
++|||+|||+++++++|+++|++|| .|.+|++.++ +|||||+|.+.++|.+|+..+ +. .++|++|+|.|
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~---~~~Gr~l~V~~ 183 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQ---KYKETDLLILF 183 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSC--CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TC---EETTEECEEEE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CC---eECCEEEEEEE
Confidence 6899999999999999999999999 8999998863 799999999999999999865 45 79999999999
Q ss_pred CCCC
Q 014955 338 GSKP 341 (415)
Q Consensus 338 a~~~ 341 (415)
++.-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8753
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=6.3e-13 Score=102.64 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=69.6
Q ss_pred CcceEEEcCCCc--cc---CHHHHHHHhcCCCCceEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 140 GHFNIFVGDLSP--EV---TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 140 ~~~~l~v~nlp~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
++++|++.|+-. ++ -++||++.|++||.|.++.|.+++. +++++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456888888842 22 2589999999999999999998854 35678999999999999999999999999999
Q ss_pred eeEEEEEccC
Q 014955 211 RQIRCNWATK 220 (415)
Q Consensus 211 ~~l~v~~a~~ 220 (415)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=7.1e-13 Score=100.44 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=65.5
Q ss_pred CcceeEEEccC--CccCC--------HHHHHHHHhhcCCeeeEEEEEeCC--------cceEEEEeCCHHHHHHHHHHhc
Q 014955 260 PQYTTVYVGNL--APEVT--------QLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 260 ~~~~~l~v~nl--p~~~~--------~~~L~~~F~~~G~~~i~~i~~~~~--------~g~afV~f~~~~~A~~A~~~l~ 321 (415)
.++++|.|.|+ |.++. ++||++.|++|| .|.+|.+.++ +|++||+|.+.++|.+|+..||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 34578999998 44443 379999999999 9999999864 6999999999999999999999
Q ss_pred CCCccccCCeeeEEeeCC
Q 014955 322 TTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 322 g~~~~~~~g~~l~v~~a~ 339 (415)
|+ .++||.|+|.|..
T Consensus 81 G~---~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 81 GR---KFANRVVVTKYCD 95 (105)
T ss_dssp TC---EETTEECEEEEEC
T ss_pred CC---EeCCCEEEEEEeC
Confidence 99 9999999999864
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=2e-13 Score=103.37 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=63.7
Q ss_pred EcCCCcccCHHHHHHHh------------cCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 014955 146 VGDLSPEVTDATLFACF------------SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (415)
Q Consensus 146 v~nlp~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 213 (415)
+.+|+..+++++|++.| ++||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 46777777877776666 999999999999875 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 014955 214 RCNWA 218 (415)
Q Consensus 214 ~v~~a 218 (415)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=6.9e-13 Score=121.28 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=68.7
Q ss_pred CCcceeEEEcc--CCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCe--eeE
Q 014955 259 NPQYTTVYVGN--LAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK--QMK 334 (415)
Q Consensus 259 ~~~~~~l~v~n--lp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~--~l~ 334 (415)
..++++|||+| |++++|+++|+++|++|| .|.+|.+.++||||||+|.+.++|.+|++.|||.......|+ +|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45568999999 578999999999999999 899999999999999999999999999999999942222345 688
Q ss_pred EeeCCC
Q 014955 335 CSWGSK 340 (415)
Q Consensus 335 v~~a~~ 340 (415)
|.|+..
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 899853
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-11 Score=92.70 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=61.8
Q ss_pred eeEEEccCC-------ccCCHHHHHHHHhhcCCeeeEEEEEe-CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeE
Q 014955 263 TTVYVGNLA-------PEVTQLDLHRHFHSLGAGVIEEVRVQ-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (415)
Q Consensus 263 ~~l~v~nlp-------~~~~~~~L~~~F~~~G~~~i~~i~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 334 (415)
++|.|.-.. .++++++|+++|++|| .|.+|.+. +.+|||||+|.+.++|..|++.++ .+.|++|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G--~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~-----~~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG--EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV-----GLVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS--CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC-----BCSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcC--CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCeEE
Confidence 455555443 4689999999999999 89999997 458999999999999999999854 46799999
Q ss_pred EeeCCCCCC
Q 014955 335 CSWGSKPTP 343 (415)
Q Consensus 335 v~~a~~~~~ 343 (415)
|.|++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999986643
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=1.9e-12 Score=99.17 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCC----------HHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCC
Q 014955 53 PSTCRSVYVGNIHTQVT----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (415)
Q Consensus 53 ~~~~~~v~v~nlp~~~t----------~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 122 (415)
+.+++.|.|.|+=.... ++||++.|++||.|.+|.+.++..+|++||+|.+.++|.+|++.|||..|.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34567899999854322 46789999999999999998877789999999999999999999999999999
Q ss_pred ceeeecccc
Q 014955 123 PIKVNWAYA 131 (415)
Q Consensus 123 ~l~v~~~~~ 131 (415)
.|+|.++..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999998743
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8e-12 Score=93.30 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=63.5
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 56 CRSVYVGNIH-------TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 56 ~~~v~v~nlp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
..+|.|.-.. .++++++|+++|++||.|.+|.++ .+.+|||||+|.+.++|.+|++.++ .+.|+.|+|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEE
Confidence 4457776554 458999999999999999999987 4567999999999999999998754 46799999999
Q ss_pred ccccCC
Q 014955 129 AYASGQ 134 (415)
Q Consensus 129 ~~~~~~ 134 (415)
+..+..
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 876653
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.8e-12 Score=100.07 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred CcceEEEcCCCC--CC---CHHHHHHHHhccCCcceEEEeecCC--------CceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 55 TCRSVYVGNIHT--QV---TEPLLQEVFSSTGPVEGCKLIRKDK--------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 55 ~~~~v~v~nlp~--~~---t~~~l~~~f~~~G~v~~v~~~~~~~--------~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
++++|+|.|+-. ++ -++||++.|++||.|.+|++..++. +|++||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999942 22 3789999999999999999988743 3899999999999999999999999999
Q ss_pred Cceeeecccc
Q 014955 122 QPIKVNWAYA 131 (415)
Q Consensus 122 ~~l~v~~~~~ 131 (415)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=4.4e-12 Score=115.98 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=64.8
Q ss_pred CCCcceEEEcC--CCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCcccc---CC--cee
Q 014955 53 PSTCRSVYVGN--IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQ--PIK 125 (415)
Q Consensus 53 ~~~~~~v~v~n--lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~--~l~ 125 (415)
..++++|||+| |+.++||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 44678899999 578999999999999999999988765 5689999999999999999999999874 44 567
Q ss_pred eecc
Q 014955 126 VNWA 129 (415)
Q Consensus 126 v~~~ 129 (415)
+.+.
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7766
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.1e-11 Score=94.86 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=64.5
Q ss_pred cceeEEEccCCccC----------CHHHHHHHHhhcCCeeeEEEEEeCC--cceEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014955 261 QYTTVYVGNLAPEV----------TQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (415)
Q Consensus 261 ~~~~l~v~nlp~~~----------~~~~L~~~F~~~G~~~i~~i~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (415)
++++|.+.|+=..- .++||++.|++|| .|.+|.+.++ +|++||+|.+.++|.+|++.|||+ ++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~---~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR---WF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC---EE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC---EE
Confidence 45789999983321 3468999999999 8999999886 699999999999999999999999 99
Q ss_pred CCeeeEEeeCC
Q 014955 329 FGKQMKCSWGS 339 (415)
Q Consensus 329 ~g~~l~v~~a~ 339 (415)
+||.|+|.|..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999975
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.9e-12 Score=97.95 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=59.1
Q ss_pred EccCCccCCHHHHHHHH------------hhcCCeeeEEEEEeCC-----cceEEEEeCCHHHHHHHHHHhcCCCccccC
Q 014955 267 VGNLAPEVTQLDLHRHF------------HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (415)
Q Consensus 267 v~nlp~~~~~~~L~~~F------------~~~G~~~i~~i~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 329 (415)
+.||+..+++++|++.| ++|| .|.+|.+.++ +|+|||+|.+.++|.+|+..|||+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~---~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR---WFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC---EET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC---EEC
Confidence 55777777887776666 9999 9999999875 799999999999999999999999 999
Q ss_pred CeeeEEeeC
Q 014955 330 GKQMKCSWG 338 (415)
Q Consensus 330 g~~l~v~~a 338 (415)
||+|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-10 Score=82.88 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCcceeEEEccCC----ccCCH----HHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCC
Q 014955 259 NPQYTTVYVGNLA----PEVTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (415)
Q Consensus 259 ~~~~~~l~v~nlp----~~~~~----~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 330 (415)
.|+.-||+|...+ .+..+ .+|.+.|+.|| .|..+++..++ +||+|.+.++|.+|++ |||. .++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~---~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK---ELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC---EETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--EEEEECChHHHHHHHh-cCCe---EeCC
Confidence 4555788888766 23333 57899999999 99999999986 8999999999999998 9999 9999
Q ss_pred eeeEEeeCCC
Q 014955 331 KQMKCSWGSK 340 (415)
Q Consensus 331 ~~l~v~~a~~ 340 (415)
|.|+|+++++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.9e-10 Score=85.72 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCCcceeEEEccCCcc-CCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCC-HHHHHHHHHHhc--CCCccccCCee
Q 014955 257 ENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST-HAEAALAIQMGN--TTQSSYLFGKQ 332 (415)
Q Consensus 257 ~~~~~~~~l~v~nlp~~-~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~~~~g~~ 332 (415)
...+++..|+|+||+.+ +++++|+++|+.|| .|.+|.+.++...|||+|.+ .++|..|+..++ +. .+.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~---~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL---QLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCB---CTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCc---EEeCcE
Confidence 34566689999999999 99999999999999 99999999999999999999 899999999995 44 788888
Q ss_pred eEEee
Q 014955 333 MKCSW 337 (415)
Q Consensus 333 l~v~~ 337 (415)
+++..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=5.4e-10 Score=85.48 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred CcceEEEcCCCCC-CCHHHHHHHHhccCCcceEEEeecCCCceEEEEEec-HHHHHHHHHHhC--CccccCCceeeecc
Q 014955 55 TCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFD-RRSAAMAILSLN--GRHLFGQPIKVNWA 129 (415)
Q Consensus 55 ~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g~~l~v~~~ 129 (415)
+.+.|+|+||+.+ +++++|+++|+.||.|..|.+..+.. .|||+|.+ .++|..|+..+| +..|.|..+++...
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4578999999999 99999999999999999999988876 69999999 799999999985 67788877777543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=5.8e-10 Score=79.98 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=63.4
Q ss_pred CCCcceeEEEccCCcc-----CCH----HHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCcccc
Q 014955 258 NNPQYTTVYVGNLAPE-----VTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (415)
Q Consensus 258 ~~~~~~~l~v~nlp~~-----~~~----~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 328 (415)
..|+.-||+|..++.+ +.+ .+|.+.|..|| .|..+++..++ +||+|.+.++|.+|++ |||. .+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~---~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM---KV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS---EE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe---ee
Confidence 4566679999888632 322 56889999999 89999999987 9999999999999998 9999 99
Q ss_pred CCeeeEEeeCC
Q 014955 329 FGKQMKCSWGS 339 (415)
Q Consensus 329 ~g~~l~v~~a~ 339 (415)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999854
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=78.16 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCcceEEEcCCCc----ccCH----HHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 014955 139 SGHFNIFVGDLSP----EVTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (415)
Q Consensus 139 ~~~~~l~v~nlp~----~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 210 (415)
++.-+|+|...+. ++-. .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|++ |+|..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3445777766552 2333 5789999999999999999773 9999999999999998 99999999
Q ss_pred eeEEEEEccCC
Q 014955 211 RQIRCNWATKG 221 (415)
Q Consensus 211 ~~l~v~~a~~~ 221 (415)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=5.4e-09 Score=74.96 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCcceEEEcCCCcc-----cCH----HHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 014955 139 SGHFNIFVGDLSPE-----VTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (415)
Q Consensus 139 ~~~~~l~v~nlp~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 209 (415)
++.-+|+|..++.+ +.. .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45568888877632 333 5688999999999999999773 9999999999999998 9999999
Q ss_pred CeeEEEEEcc
Q 014955 210 SRQIRCNWAT 219 (415)
Q Consensus 210 g~~l~v~~a~ 219 (415)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=9.6e-09 Score=89.25 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=59.8
Q ss_pred CHHHHHHHhcCCCCceEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcc
Q 014955 154 TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (415)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 219 (415)
.+++|++.|++||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|+|+.++||.|.+.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4678999999999999999986543 44899999999999999999999999999999999999975
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=3.9e-08 Score=71.77 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred eeEEEccCCccCCHHHHHHHHhhc-----CCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEe
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 336 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~-----G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 336 (415)
++|-+-|||..+++..|+.+.+++ | .++.|.+..+.+-|+|+|.|...|.+|.-.|+|. +|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~---ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGS---QFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSE---EETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCCCceEEEEccchhhHHHHhhcCCe---eecCeEEEec
Confidence 689999999999999999999999 9 8999999999999999999999999999999999 9999999995
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=5.2e-08 Score=84.59 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhhcCCeeeEEEEEe----------CCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 274 VTQLDLHRHFHSLGAGVIEEVRVQ----------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 274 ~~~~~L~~~F~~~G~~~i~~i~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
-.+++|++.|++|| .|.++.+. +.+|++||+|.+.++|.+|++.|||+ +++||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G--~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr---~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR---WFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTS--CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccC--CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc---eECCeEEEEEEcC
Confidence 35689999999999 89999987 34799999999999999999999999 9999999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=6.1e-07 Score=65.52 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=66.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcc-----CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeee
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (415)
..++|-+-|||..++..-|+.+.++| |.+.+|.+.++.. =|+|+|.|...|.+|...|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 35789999999999999999999999 9999998888874 69999999999999999999999999999986
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.4e-06 Score=63.55 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=65.0
Q ss_pred eeEEEccCCccC-C----HHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 263 TTVYVGNLAPEV-T----QLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 263 ~~l~v~nlp~~~-~----~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
++|+|.||+.++ . .+.++++|..|+ ++......++=.-..|.|.+.++|.+|...||+. .+.|+.++|-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~---~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKT---EFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTS---EETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecCcceEEEEEeCChHHHHHHHHHhccc---eecCceeEEEe
Confidence 689999999877 2 256789999998 7888888988667799999999999999999999 99999999999
Q ss_pred CCC
Q 014955 338 GSK 340 (415)
Q Consensus 338 a~~ 340 (415)
+..
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 983
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-05 Score=55.94 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=62.0
Q ss_pred ceeEEEccCCccCCHHHHHHHHhh---cCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHS---LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 338 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~---~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 338 (415)
.++|.|.|||..++++.|.-+|++ -|.+.|.++.... +-|+|+|.+.+.|.+.++.- .+ .|.+.+|.|.-.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~-~H---~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQA-DH---ELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCS-CC---BSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCC-cc---eecCeEEEEEcC
Confidence 368999999999999999999997 4778999999987 89999999999999998752 23 699999999653
Q ss_pred C
Q 014955 339 S 339 (415)
Q Consensus 339 ~ 339 (415)
.
T Consensus 82 ~ 82 (104)
T 2dhx_A 82 P 82 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=58.29 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcc-----CCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeec
Q 014955 54 STCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (415)
Q Consensus 54 ~~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (415)
+..++|.|.|||++++++.|.-+|+.- |+|.+|+... +-|+|+|.+.+.|++.++ -..+.|.+..|.|..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 345789999999999999999999972 4788887765 469999999999999985 246788899999976
Q ss_pred ccccCCCCCCCCcceEEEcCCCcccC
Q 014955 129 AYASGQREDTSGHFNIFVGDLSPEVT 154 (415)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~nlp~~~~ 154 (415)
..+. +..+|++.+|++.++
T Consensus 81 ~~~~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPR-------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCCC-------CCCCCCCCSCCCCCC
T ss_pred CCCC-------CcceEeeecCCCCCC
Confidence 5433 335788999998764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00012 Score=52.50 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=55.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCC------CceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~------~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
..|.|++||+.+||+++.+.++.+..+.....+..+. ..-|||.|.+.+++....+.++|..|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999988776666655442 2579999999999999999999988764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00029 Score=51.41 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=62.2
Q ss_pred ceEEEcCCCccc-CH----HHHHHHhcCCCCceEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 014955 142 FNIFVGDLSPEV-TD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (415)
Q Consensus 142 ~~l~v~nlp~~~-~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 216 (415)
++|+|.||+.++ .. +.++++|..|+++.....+++- +-..|.|.+.++|.+|...|++..+.|+.++|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 589999998875 32 4678999999999998888542 237899999999999999999999999999999
Q ss_pred EccC
Q 014955 217 WATK 220 (415)
Q Consensus 217 ~a~~ 220 (415)
|+.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9874
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.61 E-value=0.00025 Score=50.73 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=46.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhC
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (415)
..+.++| ++|..+...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3344566 999999999999999999965 56666665 59999999999999998653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.48 E-value=0.00078 Score=48.24 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhc
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~ 321 (415)
+.++| ++|.++...||.++|+.||.+.|.-|. --.|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 44555 999999999999999999966666655 3689999999999999999774
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.27 E-value=0.0025 Score=45.66 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=55.3
Q ss_pred ceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCC--cceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR--SRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 142 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
.+|.|.+||+++||+++.+.+..+..+........+.+.. .-.-|||.|.+.+++..-.+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 3688999999999999999999998877777665543322 234599999999999999999999987
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00039 Score=49.98 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhC
Q 014955 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (415)
Q Consensus 58 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 115 (415)
.|++-++|..+...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999954 56666665 69999999999999998765
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0014 Score=49.18 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=56.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccC-Cceeeecc
Q 014955 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-QPIKVNWA 129 (415)
Q Consensus 55 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~~ 129 (415)
..+-|.|-+.|+.. -+.|...|++||.|.+... .....+-.|.|.+..+|++||. .||..+.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34669999999985 6788889999999998776 3344699999999999999995 69988875 44555543
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.15 E-value=0.00045 Score=49.83 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=50.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecC------CCceEEEEEecHHHHHHHHHHhCCccccC
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~g~afV~f~~~~~A~~a~~~l~~~~~~g 121 (415)
+..|.|+.||+.+||+++.+.++.+-.+.....+..+ ...-|||.|.+.++.....+.++|..|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4569999999999999998888765443322222222 12578999999999999999999988764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.0041 Score=46.70 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=59.4
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCC-eeeEEeeCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWGS 339 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~~l~v~~a~ 339 (415)
.+-|.|.+.|... ...|...|++|| .|.+........+..|+|.+..+|.+|+.+ ||. .++| --|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~---ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKALSK-DGR---IFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTC---EETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhC--cEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCe---EecCCEEEEEEECC
Confidence 3678899999985 677889999999 899999877788999999999999999985 888 7874 667776643
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.93 E-value=0.00099 Score=47.88 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=44.6
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhc
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~ 321 (415)
..++| ++|.++...||.++|+.||.+.|.-|. + -.|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---D-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---D-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---T-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---C-CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999844444443 3 689999999999999999775
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.66 E-value=0.001 Score=62.98 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=42.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHH
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~ 112 (415)
.|+|+|. .|..+++.+|.++|+.||+|.++.+.+++. -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4889998 799999999999999999999998876554 699999999999987764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.0087 Score=43.13 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=49.9
Q ss_pred cceEEEcCCCcccCHHHHHHHhcCCCCceEEEEeecCCCCC--cceEEEEEEcCHHHHHHHHHHhCCcee
Q 014955 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR--SRGFGFVSFRNQQDAQSAINDLTGKWL 208 (415)
Q Consensus 141 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~ 208 (415)
+-+|.|+.||+.+||+++.+.++.+-.+........+.+.+ .-..|||.|.+.++...-.+.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34789999999999999998887765543333332221111 123489999999999999999999877
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.37 E-value=0.0038 Score=47.54 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=53.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCCcce-EEEee---------------c--CCCceEEEEEecHHHHHHHHHHhCCcc
Q 014955 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIR---------------K--DKSSYGFIHYFDRRSAAMAILSLNGRH 118 (415)
Q Consensus 57 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-v~~~~---------------~--~~~g~afV~f~~~~~A~~a~~~l~~~~ 118 (415)
..|.|-+.|++. ...|.+.|++||.|.+ +...+ . ....+-.|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 348888997765 5677888999999876 22211 0 023588999999999999995 69999
Q ss_pred ccCCceeeecc
Q 014955 119 LFGQPIKVNWA 129 (415)
Q Consensus 119 ~~g~~l~v~~~ 129 (415)
|.|..|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777655
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.69 E-value=0.0058 Score=57.80 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=42.1
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcc-eEEEEeCCHHHHHHHHH
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQ 318 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g-~afV~f~~~~~A~~A~~ 318 (415)
++|+|. .|..+++.+|.++|++|| .|.++.+.+++| ||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 679997 799999999999999999 999999999876 89999999998887654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.14 E-value=0.027 Score=42.91 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=52.6
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEE-EEEeC-------------------CcceEEEEeCCHHHHHHHHHHhcC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQR-------------------DKGFGFVRYSTHAEAALAIQMGNT 322 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~-i~~~~-------------------~~g~afV~f~~~~~A~~A~~~l~g 322 (415)
..|.|-+.|.+.. ..+.+.|++|| .|.+ ....+ ..++..|+|.+..+|.+|+. -||
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G--~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFG--TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGS--CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhc--eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3577888877655 45778899999 5555 22111 35688999999999999998 489
Q ss_pred CCccccCCeeeEEeeCC
Q 014955 323 TQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 323 ~~~~~~~g~~l~v~~a~ 339 (415)
. .++|.-|-|.+.+
T Consensus 84 ~---ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 A---VFNGVLLGVIPYT 97 (132)
T ss_dssp C---EETTEECEEEECC
T ss_pred e---EeCcEEEEEEECC
Confidence 9 8999988887654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.74 E-value=1.7 Score=41.94 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=45.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhccCCcceEEEeecCCCceEEEEEecHHHHHHHHHHhCC
Q 014955 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (415)
Q Consensus 56 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 116 (415)
...++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.++|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3445665 99999999999999999964 55554443 699999999999999988754
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.91 E-value=4.4 Score=38.99 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=45.2
Q ss_pred ceeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCC
Q 014955 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (415)
Q Consensus 262 ~~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 323 (415)
...++|+ +|..+...+|.++|+.||. .+|+... ...|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~wid-dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWID-DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECS-SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEc-CCeEEEEECCHHHHHHHHHHHHhC
Confidence 3456665 9999999999999999983 3444443 467999999999999999988543
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.16 E-value=28 Score=24.04 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=45.5
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcC
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g 322 (415)
+-+.|.|+|..+-..++.-.....| .--.|... .|.|.|.|.+.++-..|+..|-+
T Consensus 13 clikiinipqgtlkaevvlavrhlg--yefycdyi--dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEEC--SSCEEEEESSHHHHHHHHHHHEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcC--eeEeeeee--cCeeEEEecCChHHHHHHHHHHh
Confidence 5678999999999998888888888 44455554 37999999999999999987743
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=55.40 E-value=16 Score=24.43 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=39.6
Q ss_pred ccCCHHHHHHHHhhcC---CeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEeeCC
Q 014955 272 PEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 339 (415)
Q Consensus 272 ~~~~~~~L~~~F~~~G---~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 339 (415)
..++..+|..++..-+ ...|-.|.+..+ |.||+-. .+.+..+++.|++. .+.|+.++|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~-~~~~~~~~~~l~~~---~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEIL-NGKGPHVLKVMKNT---TVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEEC-TTCHHHHHHHHTTC---CC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEEC-HHHHHHHHHHhccc---cCcCceEEEEECC
Confidence 3566677777776544 235667777654 8888874 44577788889888 8999999988764
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=50.79 E-value=64 Score=22.96 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=45.0
Q ss_pred EEccCCccCCHHHHHHHH-hhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHHhcCCCccccCCeeeEEee
Q 014955 266 YVGNLAPEVTQLDLHRHF-HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 337 (415)
Q Consensus 266 ~v~nlp~~~~~~~L~~~F-~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 337 (415)
+|-.++..+.-+||..-. ..|| .-.+++... .-..|-..+.++-.+|++.|+.. -.-+.|+|-.
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n--~EllIpl~sQeDLDkaIellDrs----s~~kSLrIlL 84 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN--NELVIPLTTQDDLDKAVELLDRS----IHMKSLKILL 84 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHS--SCEEEEECS--SSSCEECCSHHHHHHHHHHHHHC----SSCCSEEEEE
T ss_pred EEEeccCCccHHHHHHHHHHHhC--CeeeEEEec--ceEEEeccCHHHHHHHHHHHccC----CcccceEEEE
Confidence 344567788888877654 4677 667777763 46778899999999999998765 3444455533
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.42 E-value=35 Score=27.19 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=35.2
Q ss_pred eeEEEccCCcc---------CCHHHHHHHH--hhcCCeeeEEEEEeCC-cceEEEEeCCH-HHHHHHH
Q 014955 263 TTVYVGNLAPE---------VTQLDLHRHF--HSLGAGVIEEVRVQRD-KGFGFVRYSTH-AEAALAI 317 (415)
Q Consensus 263 ~~l~v~nlp~~---------~~~~~L~~~F--~~~G~~~i~~i~~~~~-~g~afV~f~~~-~~A~~A~ 317 (415)
.+..|.|+|.. .+..+|++.| ..|.+..|..+.-..+ +|++.|.|.+. ..-..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 46778898872 2447899977 8887444444433333 68999999864 3333344
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.92 E-value=45 Score=22.14 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhccCCcc-----eEEEeecCCCceEEEEEecHHHHHHHHHHhCCccccCCceeeecc
Q 014955 67 QVTEPLLQEVFSSTGPVE-----GCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (415)
Q Consensus 67 ~~t~~~l~~~f~~~G~v~-----~v~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (415)
.+...+|..++..-+.+. .|.+.. .|.||+-.... |..++..|++..+.|+.+.++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 355667777776544333 344422 38999887766 67888999999999999988754
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.01 E-value=47 Score=26.47 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=36.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hccCCcceEEEeecC--CCceEEEEEecHHHHH
Q 014955 58 SVYVGNIHT-Q--------VTEPLLQEVF--SSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAA 108 (415)
Q Consensus 58 ~v~v~nlp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~--~~g~afV~f~~~~~A~ 108 (415)
++.|-|+|. . .+..+|.+.| ..|.++. |+.+... .+|+|.|.|.+.-+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf 76 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGL 76 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHH
Confidence 477788876 2 4458899977 8998874 5665544 4689999999876543
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.50 E-value=1.2e+02 Score=20.94 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=40.7
Q ss_pred EEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCC---cceEEEEeCCHHHHHHHHHH
Q 014955 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 319 (415)
Q Consensus 265 l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~---~g~afV~f~~~~~A~~A~~~ 319 (415)
-++-.++...+..+|++.++.+=.+.|..|....- ..-|||++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 45556788999999999998643468888876542 34699999888777765544
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.51 E-value=1.6e+02 Score=18.63 Aligned_cols=54 Identities=6% Similarity=-0.014 Sum_probs=42.2
Q ss_pred eeEEEccCCccCCHHHHHHHHhhcCCeeeEEEEEeCCcceEEEEeCCHHHHHHHHHH
Q 014955 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319 (415)
Q Consensus 263 ~~l~v~nlp~~~~~~~L~~~F~~~G~~~i~~i~~~~~~g~afV~f~~~~~A~~A~~~ 319 (415)
.++.|.++.-.-=...|...+.. . .|..+.+....+.+.|.|.+.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~--gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-A--GAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-T--TCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-C--CcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 57889999888778888988888 6 578888887788889999855555556654
Done!