BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014956
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A
pdb|2EFC|C Chain C, Ara7-GdpATVPS9A
pdb|2EFD|A Chain A, Ara7ATVPS9A
pdb|2EFD|C Chain C, Ara7ATVPS9A
pdb|2EFE|A Chain A, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|C Chain C, Ara7-Gdpnh2ATVPS9A
pdb|4G01|A Chain A, Ara7-gdp-ca2+/vps9a
Length = 267
Score = 293 bits (751), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 143/254 (56%), Positives = 194/254 (76%), Gaps = 2/254 (0%)
Query: 17 VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
+ +DFL+RMR P++ D V+SIKSFIVSFS N +PE D VQEFF+ ME+A + HPLW
Sbjct: 10 LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 69
Query: 77 ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
+ + E ++SA +GLEKYVMTKLF+R FAS +E+V D+++ +K+ L+Q F+ PE+LDI
Sbjct: 70 SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 129
Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADD 195
PTF QNE+SWLLA+KELQKIN KAPR+K+ ASI+ N GAD+
Sbjct: 130 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADE 188
Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 189 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 248
Query: 256 MEETEFEKSMQAAR 269
++E EFEK+M++AR
Sbjct: 249 LDEAEFEKNMESAR 262
>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|C Chain C, Ara7-GdpATVPS9A(D185N)
Length = 267
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/254 (55%), Positives = 194/254 (76%), Gaps = 2/254 (0%)
Query: 17 VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
+ +DFL+RMR P++ D V+SIKSFIVSFS N +PE D VQEFF+ ME+A + HPLW
Sbjct: 10 LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 69
Query: 77 ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
+ + E ++SA +GLEKYVMTKLF+R FAS +E+V D+++ +K+ L+Q F+ PE+LDI
Sbjct: 70 SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 129
Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADD 195
PTF QNE+SWLLA+KELQKIN KAPR+K+ ASI+ N GA++
Sbjct: 130 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGANE 188
Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 189 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 248
Query: 256 MEETEFEKSMQAAR 269
++E EFEK+M++AR
Sbjct: 249 LDEAEFEKNMESAR 262
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 82 EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLL-----QTFLRPEHLDI 135
E +E M+ +EKY+MT+L+ F T++D K D I ++I L Q P + DI
Sbjct: 79 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 138
Query: 136 PTFLQNEASWLL--AEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
P E S ++ A ++ ++++ + PR+K+ I++N E A
Sbjct: 139 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNA---IKITKN-EPASA 189
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
DDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+
Sbjct: 190 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 249
Query: 253 SLSMEETEFEKSM 265
SL++ + +F++ M
Sbjct: 250 SLNLSQEDFDRYM 262
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 82 EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ 140
E +E + +EKY+ T+L+ F T++D K D I ++I L+ ++ P+ L +P
Sbjct: 81 ERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQXLCVPV--- 136
Query: 141 NEASWLLAEKELQKINAL------KAPREKVXXXXXXXXXXXXXXXXASISENVELGGAD 194
NE +++ ++ I + + PR+K+ I++N E AD
Sbjct: 137 NEDIPEVSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIFNA---IKITKN-EPASAD 192
Query: 195 DFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKS 253
DFLP LIYI++K NPP+L SNI++I + + L + E YYFTNL A FI L+A+S
Sbjct: 193 DFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDAQS 252
Query: 254 LSMEETEFEK 263
L++ + +F++
Sbjct: 253 LNLSQEDFDR 262
>pdb|3LN7|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
pdb|3LN7|B Chain B, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
Length = 757
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 255 SMEETEFEKSMQA-ARLANKVTLIEESTTSNGIK-TLGEQGHPERHDVTRIEASAMSNDR 312
S+E T EK++ + A N+ +I+ +T+ G+ T+ +QG R D + A D+
Sbjct: 507 SVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDK 566
Query: 313 KSLEEQRRVGPSQRIY--GNNTI 333
+ E VG R + G+ T+
Sbjct: 567 EVXVEDYLVGTEYRFFVLGDETL 589
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,288,959
Number of Sequences: 62578
Number of extensions: 369562
Number of successful extensions: 973
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 8
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)