BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014956
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis
thaliana GN=VPS9A PE=1 SV=1
Length = 520
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 190/425 (44%), Positives = 275/425 (64%), Gaps = 42/425 (9%)
Query: 17 VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
+ +DFL+RMR P++ D V+SIKSFIVSFS N +PE D VQEFF+ ME+A + HPLW
Sbjct: 8 LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 67
Query: 77 ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
+ + E ++SA +GLEKYVMTKLF+R FAS +E+V D+++ +K+ L+Q F+ PE+LDI
Sbjct: 68 SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 127
Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADD 195
PTF QNE+SWLLA+KELQKIN KAPR+K++CI+NCC++INNLLLNASI+ N GAD+
Sbjct: 128 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADE 186
Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 246
Query: 256 MEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSL 315
++E EFEK+M++AR +++ ++ T G + P R + T + +++ R++
Sbjct: 247 LDEAEFEKNMESARA--RISGLDSQTYQTGHGS----APPPRDESTLQKTQSLNPKRENT 300
Query: 316 EEQRRVGPSQRIYGNNTI-------------------TSGG------------YGYPFME 344
Q + S + G N + G YP++
Sbjct: 301 LFQSK--SSDSLSGTNELLNINSETPMKKAESISDLENKGATLLKDTEPSKVFQEYPYIF 358
Query: 345 AEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRH-VSVPMTVAPIPHFEGNNSSFKQPAT 403
A A L GDVE LL+ YK +V KY L + + S+ + +P+ G N+S +
Sbjct: 359 ASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSSPLQASSGFNTSKESEDH 418
Query: 404 KTSAS 408
+ S+S
Sbjct: 419 RRSSS 423
>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps901 PE=1 SV=3
Length = 572
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 154/274 (56%), Gaps = 25/274 (9%)
Query: 19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWAN 78
F+ FL+++R+ ++ + + +KSF+ F+ K +++F + I+ + WA+
Sbjct: 115 FHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWAS 174
Query: 79 ATIEAIESAMEGLEKYVMTKLFSRTFA------------STSEDVKIDQEISEKICLLQT 126
+ I++A EG+EK V+ +L++ F+ S+DV+ D+ +SEK+ L Q
Sbjct: 175 GSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ- 233
Query: 127 FLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISE 186
++ E+LDI + + LA EL++IN APR+K++C++NCC++I + L N
Sbjct: 234 WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNV---- 289
Query: 187 NVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
V+ AD F+P+LI+++++A P L SNI++IQ +R L E YY + L+ A +FI
Sbjct: 290 -VKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFI 348
Query: 247 LDLNAKSLSMEETEFE-------KSMQAARLANK 273
L+ SL++ E EF K M+ +L+ K
Sbjct: 349 ETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEK 382
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1
OS=Homo sapiens GN=GAPVD1 PE=1 SV=2
Length = 1478
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 8/214 (3%)
Query: 36 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
+ I+ FI F A ++ +V++F + A+ +W NA+ E ++ A +E+ V
Sbjct: 1263 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSV 1321
Query: 96 MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
M ++F F + D+ DQ + E I L + H L IP EA W A+ E+
Sbjct: 1322 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEI 1381
Query: 153 QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
+ I+A K PR+KV CI+ C I NLL S++ + GADDF+PVL++++IKANPP L
Sbjct: 1382 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1438
Query: 213 HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
S +++I + + L E +Y++ +A FI
Sbjct: 1439 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1471
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos
taurus GN=GAPVD1 PE=2 SV=1
Length = 1413
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 8/214 (3%)
Query: 36 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
+ I+ FI F A ++ +V++F + A+ +W NA+ E ++ A +E+ V
Sbjct: 1198 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSV 1256
Query: 96 MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
M ++F F + D+ DQ + E I L + H L IP EA W A+ E+
Sbjct: 1257 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSEI 1316
Query: 153 QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
+ I+A K PR+KV CI+ C I NLL S++ + GADDF+PVL++++IKANPP L
Sbjct: 1317 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1373
Query: 213 HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
S +++I + + L E +Y++ +A FI
Sbjct: 1374 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1406
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1
SV=2
Length = 451
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 143/270 (52%), Gaps = 27/270 (10%)
Query: 19 FYDF---LDRMRNPASLDLVRSIKSFIVSFSFNNA--NPENDGKRVQEFFTTMESAIKDH 73
FYDF + +++ P + LV+ KSF+ +F + K + +F T + +
Sbjct: 60 FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLY 119
Query: 74 PLWANATIEAIESAMEGLEKYVMTKLFSRTFAST-------------SEDVKIDQEISEK 120
+ + + +A EG+EK +M KL+SR F+ + +D+ D + EK
Sbjct: 120 EPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEK 179
Query: 121 ICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKVLCIMNCCRIINN 177
I + F+ P LDIP + N LA KEL KIN K+PR+K++C++N ++I
Sbjct: 180 IRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFG 238
Query: 178 LLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFT 237
LL + + +N GAD F+PVLIY I+K L SN+ +I+ +R + E YY +
Sbjct: 239 LLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLS 294
Query: 238 NLVSAKTFILDLNAKSLSMEETE-FEKSMQ 266
+L +A FI++L +SL++E+ E FE++ Q
Sbjct: 295 SLQAALNFIMNLTERSLTIEDHEDFEEAYQ 324
>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus
musculus GN=Gapvd1 PE=1 SV=2
Length = 1458
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 36 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
+ I+ FI F A ++ +V++F + + +W NA+ E ++ A +E+ V
Sbjct: 1243 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSV 1301
Query: 96 MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
M ++F F + D+ DQ + E I L + H L IP EA W A+ E+
Sbjct: 1302 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEI 1361
Query: 153 QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
+ I+A K PR+KV CI+ C I NLL S++ + GADDF+PVL++++IKANPP L
Sbjct: 1362 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1418
Query: 213 HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
S +++I + + L E +Y++ +A FI
Sbjct: 1419 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1451
>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1
OS=Xenopus laevis GN=gapvd1 PE=2 SV=1
Length = 1452
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 8/212 (3%)
Query: 38 IKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMT 97
I FI F A ++ +V+EF ++ A+ +W NA+ E ++ A +E+ +M
Sbjct: 1239 IHEFIQDFQKLTA-ADDKTAQVEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMN 1297
Query: 98 KLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQK 154
++F F + D+ DQ + E I L + H L IP EA W A+ E++
Sbjct: 1298 RIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRT 1357
Query: 155 INALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHS 214
I+A K PR+KV CI+ C I NLL S++ + GADDF+PVL++++IKANP L S
Sbjct: 1358 ISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLS 1414
Query: 215 NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
+++I + L+ E +Y++ +A FI
Sbjct: 1415 TVQYISSFYSN-RLIGEESYWWMQFTAAVEFI 1445
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2
Length = 708
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 115/193 (59%), Gaps = 18/193 (9%)
Query: 82 EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLL-----QTFLRPEHLDI 135
E +E M+ +EKY+MT+L+ F T++D K D I ++I L Q P + DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478
Query: 136 PTFLQNEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
P E S ++ + ++ ++++ + PR+K+ CI C + I N + I++N E A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASA 529
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
DDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589
Query: 253 SLSMEETEFEKSM 265
SL++ + +F++ M
Sbjct: 590 SLNLSQEDFDRYM 602
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1
Length = 492
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 117/189 (61%), Gaps = 10/189 (5%)
Query: 82 EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ 140
E +E M+ +EKY+MT+L+ F T++D K D I ++I L ++ P+ L +P +
Sbjct: 203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261
Query: 141 -NEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFL 197
E S ++ + ++ ++++ + PR+K+ CI C + I N + I++N E ADDFL
Sbjct: 262 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFL 317
Query: 198 PVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSM 256
P LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+SL++
Sbjct: 318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377
Query: 257 EETEFEKSM 265
+ +F++ M
Sbjct: 378 SQEDFDRYM 386
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1
Length = 491
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 140/253 (55%), Gaps = 15/253 (5%)
Query: 19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
F DFL ++ + K F+ + + + + E + Q+F+ + ++
Sbjct: 142 FIDFLKTFHKTGQ-EVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTR---G 197
Query: 78 NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
E +E M+ +EK++MT+L+ F T++D K D I ++I L ++ P+ L +P
Sbjct: 198 KVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVP 256
Query: 137 TFLQ-NEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
+ E S ++ + ++ ++++ + PR+K+ CI C + I N + I++N E A
Sbjct: 257 VNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKN-EPASA 312
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
DDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+
Sbjct: 313 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 372
Query: 253 SLSMEETEFEKSM 265
SL++ + +F++ M
Sbjct: 373 SLNLSQEDFDRYM 385
>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
GN=rme-6 PE=3 SV=1
Length = 1104
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 35 VRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKY 94
V ++ F F F A+ E + +Q T + + + W AT I AM +E++
Sbjct: 890 VVAVGKFYSEFKFLQAHDER-AEFLQNLLTYLRERLMQNYDWNFATESMIARAMTTMERF 948
Query: 95 VMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKE 151
VM ++ F E D K D+ + I + + P H L IP L EA W A+ E
Sbjct: 949 VMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEAPWPSAQAE 1008
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQ 211
L ++ +EK+ C++ CC +INNL+ ++S + ADD PVL+++IIKANP
Sbjct: 1009 LSMLDNYVTAQEKLNCLVRCCDVINNLV---ALSSKNAVASADDLTPVLVFVIIKANPRS 1065
Query: 212 LHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
L SN++FI+ + + AYY+ N SA +I
Sbjct: 1066 LLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYI 1100
>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans
GN=rme-6 PE=1 SV=2
Length = 1093
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 15/219 (6%)
Query: 35 VRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPL----WANATIEAIESAMEG 90
V ++ F F + A E EF + + ++D + W AT + AM
Sbjct: 879 VTAVLKFYDEFKYLRAQDER-----AEFLKNLLTFLRDRLMQNVDWNFATDTMMSRAMTT 933
Query: 91 LEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRP--EHLDIPTFLQNEASWLL 147
+E+YV+ ++ F + D D+ + I + + P + L IP L EA W
Sbjct: 934 IERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPS 993
Query: 148 AEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKA 207
A+ EL ++ ++K+ C++ CC +INNL+ ++S + ADD PVL+++IIKA
Sbjct: 994 AQAELSMLDIYVTAQDKLNCVVRCCDVINNLV---ALSSKNAVASADDLTPVLVFVIIKA 1050
Query: 208 NPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
NP L SN++F++ + + AYY+ N SA +I
Sbjct: 1051 NPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYI 1089
>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
melanogaster GN=CG1657 PE=1 SV=2
Length = 1712
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 84 IESAMEGLEKYVMTKLFSRT-FASTSEDVKIDQEISEKICLLQTFLRPEH--LDIPTFLQ 140
+++A +E+ ++ +++ + F + DV D+ +S I LQ F+ P H L I
Sbjct: 1545 VDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIAQEYL 1604
Query: 141 NEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVL 200
EA W A+++L + A K PREK+ CI+NC I +LL +S + ADD LPVL
Sbjct: 1605 GEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSS----GRVPAADDLLPVL 1660
Query: 201 IYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
IY++I ANPP L S +++I + + L E +Y+T S FI
Sbjct: 1661 IYVVIMANPPYLLSTVEYISCFLGKK-LEGEDEFYWTLFGSVVKFI 1705
>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2
Length = 1774
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 84 IESAMEGLEKYVMTKLFSRT-FASTSEDVKIDQEISEKICLLQTFLRPEH--LDIPTFLQ 140
+++A E +E+ ++ ++ + F + DV D +S I LQ F+ P H L I
Sbjct: 1607 VDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEYL 1666
Query: 141 NEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVL 200
EA W A+++L + A K PREK+ CI+NC I +LL + + ADD LPVL
Sbjct: 1667 GEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSC----GRVPAADDLLPVL 1722
Query: 201 IYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
IY++I ANPP L S +++I + + L E +Y+T S FI
Sbjct: 1723 IYVVIMANPPYLLSTVEYISCFLGRK-LDGENEFYWTLFGSVVKFI 1767
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 OS=Mus musculus GN=Rin2 PE=1 SV=3
Length = 903
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 151 ELQKI-------NALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYI 203
EL+KI + +P +KV+ ++ C++I ++ N S + GADDFLPVL Y+
Sbjct: 659 ELEKIKLKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNS----GRMYGADDFLPVLTYV 714
Query: 204 IIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLN----AKSLSMEET 259
I + + +L + I+++ ++L E YY T+ A + I + A+ LS E
Sbjct: 715 IAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLIKNFQEEQAARLLSSEAR 774
Query: 260 EFEKSMQAARLANKV 274
+ + R N+
Sbjct: 775 DTLRQWHKRRTTNRT 789
>sp|Q8WYP3|RIN2_HUMAN Ras and Rab interactor 2 OS=Homo sapiens GN=RIN2 PE=1 SV=1
Length = 895
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 155 INALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHS 214
+ + +P +KV+ ++ C++I ++ N S + GADDFLPVL Y+I + + +L +
Sbjct: 661 MQKMYSPEKKVMLLLRVCKLIYTVMENNS----GRMYGADDFLPVLTYVIAQCDMLELDT 716
Query: 215 NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLN----AKSLSMEETEFEKSMQAARL 270
I+++ ++L E YY T+ A + I + A+ LS E + + R
Sbjct: 717 EIEYMMELLDPSLLHGEGGYYLTSAYGALSLIKNFQEEQAARLLSSETRDTLRQWHKRRT 776
Query: 271 ANK 273
N+
Sbjct: 777 TNR 779
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 OS=Mus musculus GN=Rin3 PE=2 SV=2
Length = 980
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 149 EKELQKINALK---APREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIII 205
EK LQK+ ++ +P +K+ ++ C++I + + ++ + GADDFLPVL+Y++
Sbjct: 737 EKILQKLTSMHKAYSPGKKISILLKTCKLIYD---SMALGNPGKPYGADDFLPVLMYVLA 793
Query: 206 KANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
++N ++ N++++ A+ + E +YY T A I
Sbjct: 794 RSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHI 834
>sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN=RIN3 PE=1 SV=4
Length = 985
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 147 LAEKELQKINALK---APREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYI 203
+ EK LQK ++ +P +K+ ++ C++I + + ++ + GADDFLPVL+Y+
Sbjct: 738 MMEKILQKFTSMHKAYSPEKKISILLKTCKLIYD---SMALGNPGKPYGADDFLPVLMYV 794
Query: 204 IIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
+ ++N ++ N++++ A+ + E +YY T A I
Sbjct: 795 LARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHI 837
>sp|O94388|VPS92_SCHPO Vacuolar protein sorting-associated protein 9b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps902 PE=1 SV=1
Length = 402
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 123/302 (40%), Gaps = 45/302 (14%)
Query: 88 MEGLEKYVMTKLFSRTFA-STSEDVKIDQEIS------EKICLLQTFLRPEHLDIPTFLQ 140
M+ +E V L+ R F STS D D + EK L+ P+ + L
Sbjct: 115 MDQIEDIVCEYLYDRIFCLSTSTDAAKDDLLKKFIASEEKKELINCIPIPDDEKLTNRLH 174
Query: 141 --NEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLP 198
+EA + L E+ PR K+ M +N+ +LNAS EL AD L
Sbjct: 175 EVSEAFFALDEQH--------TPRSKINTFMT----VNSSILNASQLPQEELN-ADSLLN 221
Query: 199 VLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEE 258
+ IY I+ L S++ F+ +R L E Y T +A TFIL L+
Sbjct: 222 LTIYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYCLTTFEAALTFILRACPNLLTQSS 281
Query: 259 TEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQ 318
+ + +AN T+ +TSN + + +P V R S + N +LE+
Sbjct: 282 IQPSDDPLSLEVANSETV----STSNSLHDPSAEPYP----VNRSSLSNLRNLGLALEKS 333
Query: 319 RRVGPSQRIYGNNTITSGG--------YGYPFME-----AEASRLTTGDVEKLLSVYKDV 365
S+ N+T S G P +E ++AS L G++E LLS YK +
Sbjct: 334 YASLLSK--VANHTAKSSEDSSNSVEFVGDPPLERFLTVSDASDLKIGEIELLLSDYKRL 391
Query: 366 VR 367
R
Sbjct: 392 AR 393
>sp|Q8C190|VP9D1_MOUSE VPS9 domain-containing protein 1 OS=Mus musculus GN=Vps9d1 PE=2
SV=1
Length = 649
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 130 PEHLDIPTFL-----QNEAS---WLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLN 181
P L IPT L + +AS + A +EL + P++K+ CI+ R+I +
Sbjct: 505 PTALGIPTKLLPRVPEAQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAED 564
Query: 182 ASISENVELGG----------ADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSE 231
++ G ADD LP+L ++++++ PQL S ++ + + L+ E
Sbjct: 565 YCRAQEARPEGESQPPAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFTHEGYLIGE 624
Query: 232 AAYYFTNLVSAKTFI 246
Y T+L SA +++
Sbjct: 625 EGYCLTSLQSALSYV 639
>sp|Q8MQW8|SPRI_DROME Protein sprint OS=Drosophila melanogaster GN=spri PE=2 SV=2
Length = 1790
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 145 WLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYII 204
W L E EL ++ L E LC+++ + +A+ + GADDFLPVL+Y++
Sbjct: 1576 WRLQEAEL-PLDKL----ELFLCVIST-------VFDATGCPRGQQLGADDFLPVLVYVV 1623
Query: 205 IKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSA----KTFILDLNAKSLSMEETE 260
K +F+ + +L E YY T L SA KTF+ +S S
Sbjct: 1624 AKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSAVQVLKTFMAS-EGESGSGSLDW 1682
Query: 261 FEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEA 305
+ A +V + +E S +TL + H +V RI A
Sbjct: 1683 RSSCLPACSSVLRVIIPDECNGSLQTRTLPVRPHTTTREVCRIIA 1727
>sp|Q02866|MUK1_YEAST Protein MUK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MUK1 PE=1 SV=1
Length = 612
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKS 253
DD+L +LIY II P + N +FI+L+R + LV ++ TNL +A F+ L
Sbjct: 353 DDYLSLLIYYIITIVPRDIFLNAEFIRLFRYKKKLVETESFALTNLEAALVFVEGLT--- 409
Query: 254 LSMEETEFEKSMQAARLANKVTLIEESTTS 283
+ +F +Q N+ ++E S +S
Sbjct: 410 ----KNDFSNELQDKLTVNESKILENSISS 435
>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens
GN=ANKRD27 PE=1 SV=2
Length = 1050
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 148 AEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKA 207
A++EL ++N +P++K++C+ ++I + S N+E ADD L VL+Y+++K
Sbjct: 267 AKRELAQLNKCTSPQQKLVCLRKVVQLITQ---SPSQRVNLETMCADDLLSVLLYLLVKT 323
Query: 208 NPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQA 267
P +N+ +I+ +R ++ E Y T+ +A +I SLS + E E
Sbjct: 324 EIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYI---RQGSLSAKPPESEGFGDR 380
Query: 268 ARLANKVTLIEESTTS 283
L +++L+ + T+S
Sbjct: 381 LFLKQRMSLLSQMTSS 396
>sp|Q9Y2B5|VP9D1_HUMAN VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=2
SV=2
Length = 631
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
DD LP+L ++++++ PQL S ++ + + L+ E Y T+L SA +++
Sbjct: 569 DDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYV 621
>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN=Rin1 PE=1 SV=1
Length = 763
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 132 HLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELG 191
HL + + ++ E + +K LQ + A +P +V ++ C+ LL A S+ E
Sbjct: 472 HLTLSSPVETEQ---VRQKLLQLLRAY-SPSAQVKWLLQACK----LLYTALKSQAGENA 523
Query: 192 GADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFT 237
GAD+FLP+L ++ + + P L +++ +L E YY T
Sbjct: 524 GADEFLPLLSLVLAQCDLPDLLLEAEYMSELLEPTLLTGEGGYYLT 569
>sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN=RIN1 PE=1 SV=4
Length = 783
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 132 HLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELG 191
HL +P+ ++ E + +K LQ + +P +V ++ C+ LL A ++ E
Sbjct: 483 HLSLPSPVELEQ---VRQKLLQLLRTY-SPSAQVKRLLQACK----LLYMALRTQEGEGA 534
Query: 192 GADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFT 237
GAD+FLP+L ++ + P+L +++ ++L E YY T
Sbjct: 535 GADEFLPLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLT 580
>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii
GN=ANKRD27 PE=2 SV=1
Length = 1050
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 148 AEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKA 207
A++EL ++N +P++K++C+ ++I + S N+E ADD L VL+Y+++K
Sbjct: 267 AKRELAQLNKCTSPQQKLVCLRKVVQLITQ---SPSQRVNLETMCADDLLSVLLYLLVKT 323
Query: 208 NPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQA 267
P +N+ +I+ +R + E Y T+ +A +I SLS + E E
Sbjct: 324 EIPNWMANLSYIKNFRFSSSAKDELGYCLTSFEAAIEYI---RQGSLSAKPPESEGFGDR 380
Query: 268 ARLANKVTLIEESTTS 283
L +++L+ + T+S
Sbjct: 381 LFLKQRMSLLSQMTSS 396
>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus GN=Rin1 PE=2 SV=2
Length = 774
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 149 EKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKAN 208
+K LQ + A +P ++ ++ C+ LL A ++ E GAD+FLP+L ++ + +
Sbjct: 497 QKLLQLLRAY-SPSAQIKWLLQACK----LLYTALKTQAGENAGADEFLPLLSLVLAQCD 551
Query: 209 PPQLHSNIKFIQLYRRQAMLVSEAAYYFT 237
P L +++ +L E YY T
Sbjct: 552 LPDLLLEAEYMSELLEPTLLTGEGGYYLT 580
>sp|Q6ZS11|RINL_HUMAN Ras and Rab interactor-like protein OS=Homo sapiens GN=RINL PE=2
SV=1
Length = 452
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 149 EKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKAN 208
+ L ++A APR KV ++ CR ++ + EN + GAD FLP L +I +
Sbjct: 297 HERLAHLHAACAPRRKVALLLEVCR---DVYAGLARGENQDPLGADAFLPALTEELIWS- 352
Query: 209 PPQLHS---NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
P + +++F+ L EA YY T A I
Sbjct: 353 -PDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALHHI 392
>sp|Q3UMR0|ANR27_MOUSE Ankyrin repeat domain-containing protein 27 OS=Mus musculus
GN=Ankrd27 PE=1 SV=2
Length = 1048
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 148 AEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKA 207
A++EL ++N +P++K+LC+ +++ + + S N+E ADD L VL+Y+++K
Sbjct: 267 AKRELGQLNKCTSPQQKLLCLR---KVVQLMTQSPSQRVNLETMCADDLLSVLLYLLVKT 323
Query: 208 NPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQA 267
P +N+ +I+ +R + E Y T++ +A +I SLS + + E
Sbjct: 324 EIPNWMANLSYIKNFRFSSSAKDELGYCLTSVEAAIEYI---RQGSLSTKTPDAEGFGDR 380
Query: 268 ARLANKVTLIEESTTS 283
L ++ L+ + T++
Sbjct: 381 LFLKQRMNLLSQMTST 396
>sp|Q80UW3|RINL_MOUSE Ras and Rab interactor-like protein OS=Mus musculus GN=Rinl PE=1
SV=1
Length = 563
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLI-YIIIKANPP 210
L ++A APR KV ++ C +++ EN E GAD FLP L +I +
Sbjct: 417 LAHLHAACAPRRKVALLLAVC---SDVYAGLGGGENKEPLGADAFLPALTEELIWSPHIG 473
Query: 211 QLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
+ +++F+ L EA YY T A I
Sbjct: 474 ETQLDVEFLMELLDPGELRGEAGYYLTTWFGALYHI 509
>sp|Q54PZ6|Y5897_DICDI Putative uncharacterized protein DDB_G0284213 OS=Dictyostelium
discoideum GN=DDB_G0284213 PE=4 SV=2
Length = 702
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Query: 160 APREKVLCIMNCCRIINN-----LLLNASISENVELGGADDFLPVLIYIIIKANPPQLHS 214
P +K+L I+ R I +L + +++ DD LP+ Y++I A P L +
Sbjct: 389 TPMDKLLSIVQGSREIEESIKARAILELADEDDILTITGDDALPLTAYLLIHARPKYLAT 448
Query: 215 NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLA--- 271
++ + + + S Y+ NL++A +I L+ S + T S + +
Sbjct: 449 DLAYCSKFILTDIFNSSYGYHLVNLIAAIDYIKSLDILSPTKTTTSSNNSRNTSPTSSTT 508
Query: 272 ------NKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSL 315
N +L +S+ +N T+ PE EA+ +N +KSL
Sbjct: 509 NITYGGNSESLFAQSSVNNS--TISSPKQPED------EAALFNNLKKSL 550
>sp|P0C5Y8|ALS2_RAT Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1
Length = 1651
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQ 211
LQ+I+ P +K+ I I+ +L AS+ E+ L DD PV +Y++++A
Sbjct: 1553 LQQISTTFTPSDKLKVIQQTFEEISQSVL-ASLQEDF-LWSMDDLFPVFLYVVLRARIRN 1610
Query: 212 LHSNIKFIQLYRRQAMLVSEAAYYFTNL 239
L S + I+ + E FT L
Sbjct: 1611 LGSEVHLIEDLMDPYLQHGEQGIMFTTL 1638
>sp|Q920R0|ALS2_MOUSE Alsin OS=Mus musculus GN=Als2 PE=1 SV=3
Length = 1651
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQ 211
LQ+I+ P +K+ I I+ +L AS+ E+ L DD PV +Y++++A
Sbjct: 1553 LQQISTTFTPSDKLKVIQQTFEEISQSVL-ASLQEDF-LWSMDDLFPVFLYVVLRARIRN 1610
Query: 212 LHSNIKFIQLYRRQAMLVSEAAYYFTNL 239
L S + I+ + E FT L
Sbjct: 1611 LGSEVHLIEDLMDPFLQHGEQGIMFTTL 1638
>sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1
Length = 1657
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQ 211
LQ+I+ P +K+ I I+ +L AS+ E+ L DD PV +Y++++A
Sbjct: 1559 LQQISTTFTPSDKLKVIQQTFEEISQSVL-ASLHEDF-LWSMDDLFPVFLYVVLRARIRN 1616
Query: 212 LHSNIKFIQLYRRQAMLVSEAAYYFTNL 239
L S + I+ + E FT L
Sbjct: 1617 LGSEVHLIEDLMDPYLQHGEQGIMFTTL 1644
>sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=2
Length = 1657
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQ 211
LQ+I+ P +K+ I I+ +L AS+ E+ L DD PV +Y++++A
Sbjct: 1559 LQQISTTFTPSDKLKVIQQTFEEISQSVL-ASLHEDF-LWSMDDLFPVFLYVVLRARIRN 1616
Query: 212 LHSNIKFIQLYRRQAMLVSEAAYYFTNL 239
L S + I+ + E FT L
Sbjct: 1617 LGSEVHLIEDLMDPYLQHGEQGIMFTTL 1644
>sp|A4VWI6|EZRA_STRSY Septation ring formation regulator EzrA OS=Streptococcus suis
(strain 05ZYH33) GN=ezrA PE=3 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 63 FTTMESAIKDH-PLWANATIEAIESAMEGLEKYV--MTKLFSRTFASTSEDVKIDQEISE 119
F + +I+++ L + ++A E+ EG++ + + K+F+R + E VKI +
Sbjct: 261 FQNIRVSIRENTALIVSFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKN--- 317
Query: 120 KICLLQTFLRPEHLDIPTFLQNE------ASWLLAEKELQKINALKAPREKVLCIM 169
L FL EH+ T L +E A++LLA+ +L +IN LKA E + ++
Sbjct: 318 ----LPKFL--EHVVQNTQLLDEESQRLNATYLLADSKLSRINQLKARLESIEIVV 367
>sp|A4W2T8|EZRA_STRS2 Septation ring formation regulator EzrA OS=Streptococcus suis
(strain 98HAH33) GN=ezrA PE=3 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 63 FTTMESAIKDH-PLWANATIEAIESAMEGLEKYV--MTKLFSRTFASTSEDVKIDQEISE 119
F + +I+++ L + ++A E+ EG++ + + K+F+R + E VKI +
Sbjct: 261 FQNIRVSIRENTALIVSFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKN--- 317
Query: 120 KICLLQTFLRPEHLDIPTFLQNE------ASWLLAEKELQKINALKAPREKVLCIM 169
L FL EH+ T L +E A++LLA+ +L +IN LKA E + ++
Sbjct: 318 ----LPKFL--EHVVQNTQLLDEESQRLNATYLLADSKLSRINQLKARLESIEIVV 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,576,169
Number of Sequences: 539616
Number of extensions: 5367312
Number of successful extensions: 15623
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 15554
Number of HSP's gapped (non-prelim): 50
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)