Query 014956
Match_columns 415
No_of_seqs 246 out of 680
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efe_A Similarity to vacuolar 100.0 3.2E-60 1.1E-64 461.4 25.2 256 15-270 8-263 (267)
2 2ot3_A RAB5 GDP/GTP exchange f 100.0 1.1E-53 3.8E-58 416.8 24.5 251 11-270 11-267 (274)
3 1wgr_A Growth factor receptor- 44.3 9.4 0.00032 31.1 1.8 28 284-311 19-46 (100)
4 3si5_X Protein CASC5; BUBR1-bl 18.7 53 0.0018 19.5 1.4 14 15-28 9-22 (24)
5 3ivf_A Talin-1; FERM domain, c 18.5 47 0.0016 32.3 2.0 27 284-310 12-38 (371)
6 2cug_A Mkiaa0962 protein; DNAJ 16.4 2.1E+02 0.0073 21.5 5.1 45 3-47 1-47 (88)
7 2yua_A Williams-beuren syndrom 14.7 3.4E+02 0.012 20.9 6.0 38 10-47 10-47 (99)
8 3pvl_A Myosin VIIA isoform 1; 14.1 3.5E+02 0.012 28.6 7.5 140 156-311 151-300 (655)
9 3ddc_B RAS association domain- 13.1 57 0.002 28.7 0.9 37 285-332 87-123 (163)
10 1t6a_A Rbstp2229 gene product; 12.1 1.6E+02 0.0053 24.7 3.1 24 345-368 9-32 (126)
No 1
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=100.00 E-value=3.2e-60 Score=461.42 Aligned_cols=256 Identities=59% Similarity=0.985 Sum_probs=232.9
Q ss_pred ChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHH
Q 014956 15 SAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKY 94 (415)
Q Consensus 15 s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~~~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e~iEk~ 94 (415)
...+|++||++||+|+|.+++++|++||.+|....+++++++++||+||+.+.++|+.|++|++.++++++.+.++||+|
T Consensus 8 ~~~~f~~Fl~~l~~~~a~~~~~~i~~Fi~~f~~~~~~~~e~~~~v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~iEk~ 87 (267)
T 2efe_A 8 VFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKY 87 (267)
T ss_dssp -----------CCSGGGHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHSCGGGTTCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHhcCCCccchHHHHHHHHHHHHHhcCCCCCccccCCCCccchhHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 014956 95 VMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRI 174 (415)
Q Consensus 95 Im~~Ly~~lf~~~~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~e~~~~~Ai~eL~ki~~~~sP~dKL~~ll~~~k~ 174 (415)
||++||+++|++..++.++|..|++||+.|++||+|+||||+..+.++.+|..|+++|++|+.++||+|||.||++||+.
T Consensus 88 v~~~ly~~lf~~~~~d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~l~~~~k~ 167 (267)
T 2efe_A 88 VMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKV 167 (267)
T ss_dssp HHHHHHHHHSSCSHHHHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 99999999999988889999999999999966999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhccCCchhHHHHhHHHHHHHHHhcCcCCC
Q 014956 175 INNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSL 254 (415)
Q Consensus 175 I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l~gE~gYylT~l~sAv~fI~~l~~~~L 254 (415)
|++++.+.+...++.++|||||||+|||||||||||+|+||++||++|++++.+.||.|||||||++|++||++++.++|
T Consensus 168 I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~~L 247 (267)
T 2efe_A 168 INNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSI 247 (267)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred HHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHhhC
Confidence 99988653333345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhhh
Q 014956 255 SMEETEFEKSMQAARL 270 (415)
Q Consensus 255 si~~~ef~~~~~~~~~ 270 (415)
+|+++||++.|++++.
T Consensus 248 ~i~~~ef~~~~~~~~~ 263 (267)
T 2efe_A 248 SLDEAEFEKNMESARA 263 (267)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999874
No 2
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=100.00 E-value=1.1e-53 Score=416.81 Aligned_cols=251 Identities=29% Similarity=0.550 Sum_probs=226.2
Q ss_pred CCCCChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHH
Q 014956 11 AAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAME 89 (415)
Q Consensus 11 ~~~~s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~~-~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e 89 (415)
.+.++..+|++||++|++| +.+|+++|++||.+|... .++++++++.|++||..+.++|..+ |+. ++++++.+++
T Consensus 11 ~~~~~~~df~~FL~~~~~~-~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~ 86 (274)
T 2ot3_A 11 ETDRVSKEFIEFLKTFHKT-GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GKV-PPERVEKIMD 86 (274)
T ss_dssp -----CHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TCC-CHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hcc-CHHHHHHHHH
Confidence 3456789999999999999 899999999999999974 5889999999999999999999987 876 5778999999
Q ss_pred HHHHHHHHHhhHHhcCCC-ccchHHHHHHHHHHHHHhcCCCCCccccCCCCcc---chhHHHHHHHHHhcccCCChHHHH
Q 014956 90 GLEKYVMTKLFSRTFAST-SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKV 165 (415)
Q Consensus 90 ~iEk~Im~~Ly~~lf~~~-~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~---e~~~~~Ai~eL~ki~~~~sP~dKL 165 (415)
+||+|||++||+.+|++. ..+..+|..|++||+.| +||+|+||||+..... ...|..|+++|++|+.++||+|||
T Consensus 87 ~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L-~~i~~~~L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL 165 (274)
T 2ot3_A 87 QIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKL 165 (274)
T ss_dssp HHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH-cCCCHHHcCCCcccCCchHHHHHHHHHHHHHHccccCCHHHHH
Confidence 999999999999999985 45678999999999999 6999999999987543 246899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhcc-CCchhHHHHhHHHHHH
Q 014956 166 LCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAML-VSEAAYYFTNLVSAKT 244 (415)
Q Consensus 166 ~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l-~gE~gYylT~l~sAv~ 244 (415)
.||++||+.|++++... .+.++|||||||+|||||||||||+|+||++||++|++++.+ .||.|||||||++|++
T Consensus 166 ~~l~~~~k~I~~~l~~~----~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~ 241 (274)
T 2ot3_A 166 ACITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVA 241 (274)
T ss_dssp HHHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999988642 235799999999999999999999999999999999999865 7999999999999999
Q ss_pred HHHhcCcCCCCcchHHHHHHHHHhhh
Q 014956 245 FILDLNAKSLSMEETEFEKSMQAARL 270 (415)
Q Consensus 245 fI~~l~~~~Lsi~~~ef~~~~~~~~~ 270 (415)
||++++.++|+|+++||++.|.++..
T Consensus 242 fI~~l~~~~L~i~~~ef~~~~~~~~~ 267 (274)
T 2ot3_A 242 FIEKLDAQSLNLSQEDFDRYMSGQTS 267 (274)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHTTSCC
T ss_pred HHHhCCHHhcCCCHHHHHHHHhhccC
Confidence 99999999999999999999987654
No 3
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.35 E-value=9.4 Score=31.06 Aligned_cols=28 Identities=4% Similarity=0.004 Sum_probs=25.4
Q ss_pred CCcccccCCCCCChhhhHHHHHhhccCC
Q 014956 284 NGIKTLGEQGHPERHDVTRIEASAMSND 311 (415)
Q Consensus 284 ~~~ktl~~~~~~~~~~~~~~~a~k~~~~ 311 (415)
...|++.+.+.+|++|+|++.|.|.++.
T Consensus 19 gssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 19 GACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 3569999999999999999999999886
No 4
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=18.71 E-value=53 Score=19.54 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHhcC
Q 014956 15 SAVTFYDFLDRMRN 28 (415)
Q Consensus 15 s~~~f~~FL~~lk~ 28 (415)
-+-.|++|+.+||-
T Consensus 9 kKinfndFIKRLK~ 22 (24)
T 3si5_X 9 NKIDFNDFIKRLKT 22 (26)
T ss_pred hhccHHHHHHHHhc
Confidence 35689999998863
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=18.45 E-value=47 Score=32.32 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=24.5
Q ss_pred CCcccccCCCCCChhhhHHHHHhhccC
Q 014956 284 NGIKTLGEQGHPERHDVTRIEASAMSN 310 (415)
Q Consensus 284 ~~~ktl~~~~~~~~~~~~~~~a~k~~~ 310 (415)
..+||+...|.+|..|+|.++.+|++-
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~ 38 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPE 38 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGG
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999888864
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=16.38 E-value=2.1e+02 Score=21.55 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCCCCCcC--CCCCChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 014956 3 TSSSSSAS--AAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSF 47 (415)
Q Consensus 3 ~~~~~~~~--~~~~s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~ 47 (415)
|+|++++. .......++.+.|.--+..+..+|.+..+.....+.-
T Consensus 1 ~~~~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HP 47 (88)
T 2cug_A 1 GSSGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHP 47 (88)
T ss_dssp CCCCCCCCCCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCT
T ss_pred CCCchhhHhhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCc
Confidence 34444442 3333456788888775555557777777777766643
No 7
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.66 E-value=3.4e+02 Score=20.87 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=26.2
Q ss_pred CCCCCChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 014956 10 SAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSF 47 (415)
Q Consensus 10 ~~~~~s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~ 47 (415)
.....+..++.+.|.--+..+..+|.+..+.....+.-
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HP 47 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHP 47 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCc
Confidence 34445577888888876666667777777777766643
No 8
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=14.09 E-value=3.5e+02 Score=28.64 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=79.6
Q ss_pred ccCCChHHHHHHHHHHHH--------HHHHHhhhhhcccCcCCCCcchhHHH--HHHHHHHcCCcchhhHHHHHHHhhch
Q 014956 156 NALKAPREKVLCIMNCCR--------IINNLLLNASISENVELGGADDFLPV--LIYIIIKANPPQLHSNIKFIQLYRRQ 225 (415)
Q Consensus 156 ~~~~sP~dKL~~ll~~~k--------~I~~~l~~~s~s~~~~~~~ADdfLPl--LIYVvikan~~~L~Sni~YI~~F~~~ 225 (415)
+.-.++.+|+..|+..+- +-.++++.. .++ .+.+...=. |+++.+-+=+|.- .-..|+..|...
T Consensus 151 ~~~~~~l~~~~~i~~~~~~~~~LrDEiycQl~kQ~--t~n---p~~~s~~rgW~Ll~l~~~~f~Ps~-~~~~yl~~~l~~ 224 (655)
T 3pvl_A 151 DRPTSNLEKLHFIIGNGILRPALRDEIYCQISKQL--THN---PSKSSYARGWILVSLCVGCFAPSE-KFVKYLRNFIHG 224 (655)
T ss_dssp SSCCCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHT--SSC---CCHHHHHHHHHHHHHHHHHCCCCT-TTHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHhcChhhhhHHHHHHHHHh--hcC---CChHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHc
Confidence 455677888877766431 112223321 111 223333222 2333334444432 235677777654
Q ss_pred hccCCchhHHHHhHHHHHHHHHhcCcCCCCcchHHHHHHHHHhhhhcccccccccCCCCCcccccCCCCCChhhhHHHHH
Q 014956 226 AMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEA 305 (415)
Q Consensus 226 ~~l~gE~gYylT~l~sAv~fI~~l~~~~Lsi~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~ktl~~~~~~~~~~~~~~~a 305 (415)
.. .+-+.||+.+|..++. ........+..|......+....-+|..+++ ..+++.+.+.+|.++++...+
T Consensus 225 ~~-~~~a~~c~~~L~rt~~----~g~R~~~Ps~~Ei~Ai~~~~~i~~~V~llDg-----t~~~~~vds~Tt~~ell~~V~ 294 (655)
T 3pvl_A 225 GP-PGYAPYCEERLRRTFV----NGTRTQPPSWLELQATKSKKPIMLPVTFMDG-----TTKTLLTDSATTARELCNALA 294 (655)
T ss_dssp SC-TTTHHHHHHHHHHHHH----HCCCSSCCCHHHHHHHHHTCCEEEEEEETTS-----CEEEEEECTTCBHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHhhc----CCCCCcCCCHHHHHHHHcCCceEEEEEecCC-----ceEEEEEccCCcHHHHHHHHH
Confidence 21 2556677777766553 2455566677887776665554445554432 457778888999999999999
Q ss_pred hhccCC
Q 014956 306 SAMSND 311 (415)
Q Consensus 306 ~k~~~~ 311 (415)
.+++..
T Consensus 295 ~~LgL~ 300 (655)
T 3pvl_A 295 DKISLK 300 (655)
T ss_dssp HHTTCS
T ss_pred HHcCCc
Confidence 888865
No 9
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=13.07 E-value=57 Score=28.70 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=30.0
Q ss_pred CcccccCCCCCChhhhHHHHHhhccCCchhhHHHhhcCCCcccccccc
Q 014956 285 GIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNT 332 (415)
Q Consensus 285 ~~ktl~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (415)
..|.+.+.-.+|+.+|-+...+||++.. +|+.++++.
T Consensus 87 s~k~v~VsS~tTt~eVI~~LL~KFkV~d-----------nP~kFALye 123 (163)
T 3ddc_B 87 AIKQMHISSTTTVSEVIQGLLDKFMVVD-----------NPQKFALFK 123 (163)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHTTCCS-----------CGGGEEEEE
T ss_pred ceEEEEEccCCcHHHHHHHHHHHhcccC-----------ChhheEEEE
Confidence 3467777778999999999999999872 688888775
No 10
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=12.09 E-value=1.6e+02 Score=24.66 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHHH
Q 014956 345 AEASRLTTGDVEKLLSVYKDVVRK 368 (415)
Q Consensus 345 ~~~~~l~~~~v~~ll~~Yk~l~~~ 368 (415)
...+.++.+||++++..||.+..|
T Consensus 9 s~~~s~sledvK~ll~~Y~~~t~k 32 (126)
T 1t6a_A 9 PAGKTMTIEDVKQLLERYQMALKK 32 (126)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHh
Confidence 678889999999999999998654
Done!