BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014959
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/324 (80%), Positives = 279/324 (86%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 22 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 81
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 82 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 141
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 142 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 201
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 202 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 261
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 262 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 321
Query: 342 XXXXKSAGLQLDDIDLFEINEVVA 365
K+AGL+LDDIDLFEINE A
Sbjct: 322 PAAVKAAGLELDDIDLFEINEAFA 345
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/324 (80%), Positives = 279/324 (86%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 5 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 64
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 65 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 124
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 125 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 184
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 185 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 244
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 245 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 304
Query: 342 XXXXKSAGLQLDDIDLFEINEVVA 365
K+AGL+LDDIDLFEINE A
Sbjct: 305 PAAVKAAGLELDDIDLFEINEAFA 328
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 522 bits (1344), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/324 (76%), Positives = 275/324 (84%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y R SV+GDDVVIVAAYR+ LCK+KRGG KDTYPDD+LAPVLKA+IEKTN++P+EVGDIV
Sbjct: 25 YQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIV 84
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 161
VG+VL GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ GFYDIGI
Sbjct: 85 VGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 144
Query: 162 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
GAGLESMT NPMAWEGSVNPKVK QAQ+CLLPMG+TSENVA +F +TR+EQDQAAV S
Sbjct: 145 GAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAVGS 204
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
HRK G+FKDEIIP+ TKIVDPKTGDEKPVTISVDDGIRP TS+++LAKLKPVF+
Sbjct: 205 HRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFR 264
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
KDG+TTAG SSQVSDGAGAVLLMKRS+A++KGLPILGVFRTFAAVGV P+IM
Sbjct: 265 KDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAVAI 324
Query: 342 XXXXKSAGLQLDDIDLFEINEVVA 365
K+AGLQ+DDIDLFEINE A
Sbjct: 325 PAAVKAAGLQIDDIDLFEINEAFA 348
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 214/315 (67%), Gaps = 2/315 (0%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVV+V RTA+C++ RGGFKDT PD+LL+ V+ AV++ N+ P ++GDI VG VL PG+
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
A R+A F + PETVP+ TVNRQCSSGLQ G YDIG+ G+ESM++
Sbjct: 91 G-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 171 NPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXX 230
G++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +K
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQS 209
Query: 231 XGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 290
G F+ EI+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGN
Sbjct: 210 KGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGN 268
Query: 291 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGL 350
SSQVSDGA A+LL +RS A GLPILGV R++A VGV P IM + AGL
Sbjct: 269 SSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGL 328
Query: 351 QLDDIDLFEINEVVA 365
+ D+D+FEINE A
Sbjct: 329 TVSDVDIFEINEAFA 343
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 182/326 (55%), Gaps = 22/326 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGL 165
L G+ A+E R A +G P + P +NRQCSSGL G DIG+ G+
Sbjct: 70 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 166 ESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
ESMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +
Sbjct: 129 ESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAAN 186
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
S++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 187 SYQKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAF 237
Query: 281 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 238 IKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAY 297
Query: 340 XXXXXXKSAGLQLDDIDLFEINEVVA 365
++ GLQ+ DID+FEINE A
Sbjct: 298 AIPKVLEATGLQVQDIDIFEINEAFA 323
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 182/326 (55%), Gaps = 22/326 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGL 165
L G+ A+E R A +G P + P +NRQCSSGL G DIG+ G+
Sbjct: 67 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 125
Query: 166 ESMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
ESMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +
Sbjct: 126 ESMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAAN 183
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
S++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 184 SYQKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAF 234
Query: 281 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 235 IKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAY 294
Query: 340 XXXXXXKSAGLQLDDIDLFEINEVVA 365
++ GLQ+ DID+FEINE A
Sbjct: 295 AIPKVLEATGLQVQDIDIFEINEAFA 320
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 166/333 (49%), Gaps = 33/333 (9%)
Query: 54 IVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRA 113
IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 6 IVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNR 64
Query: 114 SECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 173
+ RMA AGFP V TVNR C SGL+ G + IG+G+ESM+ P
Sbjct: 65 NVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPY 124
Query: 174 A---------------------WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRK 212
A W VNPK++A ++ MG T+EN+A +G+ R+
Sbjct: 125 AVPKPERGFPTGNLVMYDTTLGWR-FVNPKMQALYGTES----MGETAENLAEMYGIRRE 179
Query: 213 EQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSE 272
EQD+ A+ SH+K G+F+DE++PV K G E+ + + D+G R +TS+ +
Sbjct: 180 EQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTSLEK 233
Query: 273 LAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI 332
LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV P I
Sbjct: 234 LAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRI 293
Query: 333 MXXXXXXXXXXXXKSAGLQLDDIDLFEINEVVA 365
M + AGL D+ L E+NE A
Sbjct: 294 MGIGPVPATRKALERAGLSFSDLGLIELNEAFA 326
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 171/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
A+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 180 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVN 324
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E +E A +N
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E +E A +N
Sbjct: 297 RKALERAGWKIGDLDLVEADEAFAAQACAVN 327
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 170/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E +E A +N
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAFAAQACAVN 327
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 180 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 294 RKALERAGWKIGDLDLVEANEAFAAQACAVN 324
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 169/331 (51%), Gaps = 18/331 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFEINEVVALVLSLIN 372
+ AG ++ D+DL E NE A +N
Sbjct: 297 RKALERAGWKIGDLDLVEANEAFAAQACAVN 327
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 165/318 (51%), Gaps = 18/318 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ C SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFE 359
+ AG ++ D+DL E
Sbjct: 297 RKALERAGWKIGDLDLVE 314
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 161/319 (50%), Gaps = 13/319 (4%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 169
Q + RMA+ P T +TV+R C S + G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 229
M NP + + + + MG+T+E + G++R++QD AV SH+
Sbjct: 126 HVSMMHGVDPNPHMSLYAAKASGM--MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 230 XXGKFKDEIIPVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTT 286
GKFKDEIIP+ + DE D+ IRP+T++ LA LKP F K GT
Sbjct: 184 VEGKFKDEIIPM-------QGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTV 236
Query: 287 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXK 346
TAG SSQ++DGA +++M A GL L V R+ A GVDPAIM K
Sbjct: 237 TAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALK 296
Query: 347 SAGLQLDDIDLFEINEVVA 365
AGL + DID E+NE A
Sbjct: 297 RAGLNMADIDFIELNEAFA 315
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 164/318 (51%), Gaps = 18/318 (5%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 171
+ R AA AG P+ +N+ SGL+ G I + G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 172 PMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 183 QNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 341
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 342 XXXXKSAGLQLDDIDLFE 359
+ AG ++ D+DL E
Sbjct: 297 RKALERAGWKIGDLDLVE 314
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 164/325 (50%), Gaps = 18/325 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++G + +
Sbjct: 6 NVVITAAVRSPIG-TFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQR-T 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
A+ R AA AGFP+TV T+ RQ SSG+Q G ++ + G+E+M+
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSS 123
Query: 171 NPMA-----W-----EGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
+P A W G + V + + MG T+EN+ ++ +TR+EQD+ A+
Sbjct: 124 SPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALR 183
Query: 221 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
SH G F D+I+P+ K K V S D+ R + + +LA LKP F
Sbjct: 184 SHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAF 237
Query: 281 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IM
Sbjct: 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPA 297
Query: 341 XXXXXKSAGLQLDDIDLFEINEVVA 365
+ L+D DL EINE A
Sbjct: 298 IRKGLEKVDWSLEDADLLEINEAFA 322
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 170/331 (51%), Gaps = 28/331 (8%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPIG-SFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT- 169
+ + R A AG P +VP TVN+ C SGL+ G D+ I G E+M+
Sbjct: 65 GQ-NVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 170 ---VNPMAWEGS------------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 214
+ P A GS + + AF Q MG+T+EN+A +F TR+ Q
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREMQ 178
Query: 215 DQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 274
D+ A++S K +FK+EI+PV I + G K TI D+ + + L+
Sbjct: 179 DKLALESQNKAENAIKNNRFKEEIVPVDVLI---RRG--KIETIDKDEYPKLGMTFEGLS 233
Query: 275 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMX 334
KLKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +M
Sbjct: 234 KLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 335 XXXXXXXXXXXKSAGLQLDDIDLFEINEVVA 365
K AGL ++DIDL E NE A
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANEAFA 324
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 173/347 (49%), Gaps = 24/347 (6%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI +A RTA+ S G FK +L K I++ N+ P + + ++G VL G
Sbjct: 8 EVVIASAARTAV-GSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+ + R A AG P P T+N C SGL+ G DI + G E+M++
Sbjct: 67 GQ-NIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
Query: 171 NP-----------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 219
+P M V+ +K MG+T+EN+A ++ +TR+EQD+ A+
Sbjct: 126 SPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELAL 185
Query: 220 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
S K GKF +EI+PV ++ + GD + D+ I+P T++ +LAKL+P
Sbjct: 186 ASQNKAEKAQAEGKFDEEIVPV---VIKGRKGD---TVVDKDEYIKPGTTMEKLAKLRPA 239
Query: 280 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 339
FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVP 299
Query: 340 XXXXXXKSAGLQLDDIDLFEINEV-----VALVLSLINFFNFINATG 381
++A + ++DIDL E NE VA++ L N +N G
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNG 346
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 24/336 (7%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
D VVIV+A RT + S G DL + V+K V+++ V P +V +++ G VLA G
Sbjct: 6 DPVVIVSAART-IIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 169
+ + R A+ AG P +VP + SGL+ G I + G+E+M+
Sbjct: 65 CGQ-NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 170 VNPMAWEGSVNPKVKAF------------EQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 217
P K+ + NC MG+T+ENVA ++ V+R++QD+
Sbjct: 124 KAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVSREDQDKV 181
Query: 218 AVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 277
AV S + G F EI+PV +V + G + + D+ R +++ ++KLK
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPV---LVSTRKG---LIEVKTDEFPRHGSNIEAMSKLK 235
Query: 278 PVFKKD--GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXX 335
P F D GT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IM
Sbjct: 236 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGI 295
Query: 336 XXXXXXXXXXKSAGLQLDDIDLFEINEVVALVLSLI 371
AG L+D+D+FEINE A V + I
Sbjct: 296 GPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAI 331
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 148/318 (46%), Gaps = 9/318 (2%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAP 108
+ VVIV A RT +SK G F++ +DL A + ++++ + ++ + + DI G V
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
Q + R AA A P +VP TVNR C S Q G + + G+E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 169 TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 228
P + +P + G+T+E ++ G++R+ QDQ A SH +
Sbjct: 122 GHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAA 179
Query: 229 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTT 287
G FK EIIP D G K + D+ IRP T+V L+ L+P F GT T
Sbjct: 180 TQSGAFKTEIIPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234
Query: 288 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKS 347
AG SS +SDGA A L+ S A GL R+ A VG DP+I K
Sbjct: 235 AGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKK 294
Query: 348 AGLQLDDIDLFEINEVVA 365
AGL DID+FE NE A
Sbjct: 295 AGLSASDIDVFEXNEAFA 312
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 149/328 (45%), Gaps = 18/328 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+A R A AG P + P T+N+ C+SG++ G D+ + G+ESM+
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 126
Query: 171 NPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P P VK + MG +EN A + + R EQD A++S
Sbjct: 127 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINS 186
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
+ + GKF +E+IPV + +P + +D S++ KLK VF+
Sbjct: 187 YTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240
Query: 282 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 300
Query: 341 XXXXXKSAGLQLDDIDLFEINEVVALVL 368
K GL+ +DI ++E+NE +LV+
Sbjct: 301 ASMVLKDVGLKKEDIAMWEVNEAFSLVV 328
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 18/330 (5%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
G +VVIV+A RT + S G L + ++ IEK + EV + +G VL
Sbjct: 18 GSEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 76
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
G +A R A AG P + P T+N+ +SG++ G D+ + G+ESM
Sbjct: 77 GEGQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESM 135
Query: 169 TVNPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 219
+ P P VK + MG +EN A + + R EQD A+
Sbjct: 136 SNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAI 195
Query: 220 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
+S+ + GKF +E+IPV + +P + +D S++ KLK V
Sbjct: 196 NSYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTV 249
Query: 280 FKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXX 338
F+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 250 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPV 309
Query: 339 XXXXXXXKSAGLQLDDIDLFEINEVVALVL 368
K GL+ +DI ++E+NE +LV+
Sbjct: 310 YAASMVLKDVGLKKEDIAMWEVNEAFSLVV 339
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 148/328 (45%), Gaps = 18/328 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 170
+A R A AG P + P T+N+ +SG++ G D+ + G+ESM+
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 126
Query: 171 NPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 221
P P VK + MG +EN A + + R EQD A++S
Sbjct: 127 VPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINS 186
Query: 222 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
+ + GKF +E+IPV + +P + +D S++ KLK VF+
Sbjct: 187 YTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240
Query: 282 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 340
K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 300
Query: 341 XXXXXKSAGLQLDDIDLFEINEVVALVL 368
K GL+ +DI ++E+NE +LV+
Sbjct: 301 ASMVLKDVGLKKEDIAMWEVNEAFSLVV 328
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 37/344 (10%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAP 108
++ I A RT K K G + P +L+ ++ + + ++D + + D+++G V
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 168
G Q R A AG PET +NR C+SGL+ G+ D+ + G+ESM
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 169 TVNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKX 225
+ PM +G + +P+ + +P G+ ++ +A G +R++ D A+ S +K
Sbjct: 127 SRVPMGSDGGAWATDPET----NYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKA 182
Query: 226 XXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGT 285
G F ++PV + V + D+ +RP+T++ LAKLK F G
Sbjct: 183 AAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGE 234
Query: 286 T---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFA 324
T GNSS + DGA VL+ +GL A
Sbjct: 235 MGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATA 294
Query: 325 AVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEVVALVL 368
G DP IM AGL +DDIDLFE+NE A V+
Sbjct: 295 TSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVV 338
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 264 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 311
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 264 IRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTF 323
R ++ + KP K A + +++GAG ++L + S A R+G P+L V R
Sbjct: 238 FRSQGGLAADGRCKPFSK------AADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGS 291
Query: 324 A 324
A
Sbjct: 292 A 292
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,730,880
Number of Sequences: 62578
Number of extensions: 386095
Number of successful extensions: 886
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 45
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)