RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014959
(415 letters)
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 709 bits (1831), Expect = 0.0
Identities = 313/365 (85%), Positives = 346/365 (94%), Gaps = 4/365 (1%)
Query: 1 MEKAINRQQVLLEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRT 60
MEKAINRQ+VLL HLRPS+S S LSASACAAGDSAAYHRT+ +GDDVVIVAAYRT
Sbjct: 1 MEKAINRQRVLLRHLRPSSS----EPSSLSASACAAGDSAAYHRTTAFGDDVVIVAAYRT 56
Query: 61 ALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAA 120
+CK+KRGGFKDTYPDDLLAPVLKAV+EKT ++PSEVGDIVVGTVLAPGSQRA+ECRMAA
Sbjct: 57 PICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAA 116
Query: 121 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVN 180
FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG+ESMT NPMAWEG VN
Sbjct: 117 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVN 176
Query: 181 PKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIP 240
P+V++F QAQ+CLLPMG+TSENVA RFGVTR+EQDQAAV+SHRKAAAATA+GKFKDEI+P
Sbjct: 177 PRVESFSQAQDCLLPMGITSENVAERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVP 236
Query: 241 VATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGA 300
V TKIVDPKTG+EKP+ ISVDDGIRPNT++++LAKLKPVFKK+GTTTAGNSSQVSDGAGA
Sbjct: 237 VHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNGTTTAGNSSQVSDGAGA 296
Query: 301 VLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEI 360
VLLMKRSVAM+KGLPILGVFR+FAAVGVDPA+MG+GPAVAIPAAVK+AGL+LDDIDLFEI
Sbjct: 297 VLLMKRSVAMQKGLPILGVFRSFAAVGVDPAVMGIGPAVAIPAAVKAAGLELDDIDLFEI 356
Query: 361 NEVVA 365
NE A
Sbjct: 357 NEAFA 361
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 398 bits (1025), Expect = e-137
Identities = 154/327 (47%), Positives = 201/327 (61%), Gaps = 21/327 (6%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
VIV+A RT + + G KD DDL A V+KA++E+ +DP EV D+++G VL G +
Sbjct: 1 VIVSAVRTPIGRFG-GALKDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAG-EG 58
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
+ R AA AG PE+VP TVNR C SGLQAVA A +I AG D+ + G+ESM+ P
Sbjct: 59 QNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAP 118
Query: 173 MAWEGSVNPK----------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 222
+ + L MG+T+ENVA ++G++R+EQD+ A+ SH
Sbjct: 119 YLLPKARRGGRLGLNTLDGMLDDGLTDPFTGLSMGITAENVAEKYGISREEQDEFALRSH 178
Query: 223 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 282
++AAAA AG+FKDEI+PV G + PV + D+G RP+T++ +LAKLKP FKK
Sbjct: 179 QRAAAAQEAGRFKDEIVPVEVP------GRKGPVVVDRDEGPRPDTTLEKLAKLKPAFKK 232
Query: 283 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 342
DGT TAGN+S ++DGA AVLLM A GL L +A GVDPAIMG+GP AIP
Sbjct: 233 DGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAIMGIGPVPAIP 292
Query: 343 AAVKSAGLQLDDIDLFEINE---VVAL 366
A+K AGL LDDIDL EINE AL
Sbjct: 293 KALKRAGLTLDDIDLIEINEAFAAQAL 319
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 371 bits (954), Expect = e-127
Identities = 149/326 (45%), Positives = 196/326 (60%), Gaps = 20/326 (6%)
Query: 54 IVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRA 113
IVAA RT + K G KD +DL A V+K ++E+ +DP + D++ G VL G Q
Sbjct: 1 IVAAARTPIGKFG-GSLKDVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQ-Q 58
Query: 114 SECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 173
+ R AA AG PE+VP TVNRQC+SGLQAV A I+AG D+ + G+ESM+ P
Sbjct: 59 NIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPY 118
Query: 174 AW----EGSVNPKVKAFEQAQNCL--------LPMGVTSENVAHRFGVTRKEQDQAAVDS 221
+ V P E L MG+T+EN+A ++G++R+EQD+ A+ S
Sbjct: 119 SVPRSRRWGVKPGNAELEDQILKDGLDDPLNGLSMGLTAENLAKKYGISREEQDEYALRS 178
Query: 222 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 281
H++AA A G FKDEI+PV + K PV +S D+GIRPNT++ +LAKLKP F
Sbjct: 179 HQRAAKAWEEGLFKDEIVPV--SVKGRK----GPVVVSSDEGIRPNTTLEKLAKLKPAFD 232
Query: 282 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 341
+GT TAGNSS ++DGA A+LLM A GL L ++A GVDP IMG+GP AI
Sbjct: 233 PNGTVTAGNSSPLNDGAAALLLMSEEKAKELGLTPLARIVSYAVAGVDPEIMGLGPVPAI 292
Query: 342 PAAVKSAGLQLDDIDLFEINEVVALV 367
P A+K AGL + DIDLFEINE A
Sbjct: 293 PKALKKAGLSISDIDLFEINEAFAAQ 318
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 316 bits (812), Expect = e-105
Identities = 144/336 (42%), Positives = 196/336 (58%), Gaps = 36/336 (10%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
DVVIV+A RT + K G KD +L A V+KA +E+ V P +V ++++G VL G
Sbjct: 2 KDVVIVSAARTPIGKFG-GALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAG 60
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ + + R AA AG P VP T+N+ C SGL+AVA A AI+AG DI + G ESM+
Sbjct: 61 AGQ-NPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMS 119
Query: 170 VNP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 209
P M +G + AF MG+T+EN+A ++G+
Sbjct: 120 QAPHVLPGSRWGQKMGDVELVDTMIHDGLTD----AFNG-----YHMGITAENLAEQYGI 170
Query: 210 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 269
TR+EQD+ A+ S +KA AA AG+FKDEI+PV K + GD PV + D+ RP+T+
Sbjct: 171 TREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQ---RKGD--PVVVDTDEHPRPDTT 225
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
LAKL+P F KDGT TAGN+S ++DGA AV++M + A GL L ++A GVD
Sbjct: 226 AESLAKLRPAFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVD 285
Query: 330 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
PAIMG+GP AI A++ AG L D+DL EINE A
Sbjct: 286 PAIMGIGPVPAIRKALEKAGWSLADLDLIEINEAFA 321
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 314 bits (806), Expect = e-104
Identities = 150/323 (46%), Positives = 204/323 (63%), Gaps = 10/323 (3%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
D IVAA RT + K+ RG FK+T PDDLLA VL++ + + +DP + D +VG +
Sbjct: 7 DAYIVAATRTPVGKAPRGMFKNTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEA 66
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R+ A AG P +V TVNR C+SGLQAVA A I+ G D+ I AG+ESM+
Sbjct: 67 EQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMS 126
Query: 170 VNPMAWEG-SVNPKVKAFEQAQNCLLP--MGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 226
+ PM S++P + F + +N + MG+T+E VA ++ V+R++QD A++SH+KA
Sbjct: 127 MVPMMGNKPSMSPAI--FARDENVGIAYGMGLTAEKVAEQWKVSREDQDAFALESHQKAI 184
Query: 227 AATAAGKFKDEIIP--VATKIVDPKTG--DEKPVTISVDDGIRPNTSVSELAKLKPVFKK 282
AA AG+FKDEI P + + D TG D K T+ +D+G R +TS+ LAKLKPVF
Sbjct: 185 AAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKPVFAN 244
Query: 283 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 342
G+ TAGNSSQ SDGAGAV+L+ + L L F +FA GV P IMG+GP AIP
Sbjct: 245 KGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGVPPEIMGIGPIEAIP 304
Query: 343 AAVKSAGLQLDDIDLFEINEVVA 365
AA+K AGL+ DD+D E+NE A
Sbjct: 305 AALKQAGLKQDDLDWIELNEAFA 327
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 297 bits (763), Expect = 5e-98
Identities = 139/316 (43%), Positives = 188/316 (59%), Gaps = 4/316 (1%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
VIVA RT + K+K+G K PDDL A V+K +++ + D+++G + Q
Sbjct: 5 VIVAGARTPVGKAKKGSLKTVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQG 64
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
+ R AG P TVP T+NR CSSGLQ++A A I G + I G ESM++ P
Sbjct: 65 LNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVP 124
Query: 173 MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAG 232
M V P + E A + MG T+E VA ++G++R++QD AV SH++AA A A G
Sbjct: 125 MMGH-VVRPNPRLVEAAPEYYMGMGHTAEQVAVKYGISREDQDAFAVRSHQRAAKALAEG 183
Query: 233 KFKDEIIPV---ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAG 289
KF DEI+PV + + E+ +T S D+G+R +T++ L KL+P F G+ TAG
Sbjct: 184 KFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNVKGSVTAG 243
Query: 290 NSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAG 349
NSSQ+SDGA AVLLM R A GL L FR+FA GV P +MG+GP AIP A+K AG
Sbjct: 244 NSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVPPEVMGIGPIAAIPKALKLAG 303
Query: 350 LQLDDIDLFEINEVVA 365
L+L DI LFE+NE A
Sbjct: 304 LELSDIGLFELNEAFA 319
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 283 bits (727), Expect = 2e-94
Identities = 120/269 (44%), Positives = 163/269 (60%), Gaps = 19/269 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G KD DL A +KA +E+ V P +V ++++G VL G
Sbjct: 1 DVVIVSAARTPI-GSFGGSLKDLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGE 59
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ R AA AG P++VP T+N+ C SGL+AVA A AI+AG DI + G+ESM+
Sbjct: 60 G-QNPARQAALKAGIPDSVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSN 118
Query: 171 NPMAWEGS-----------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 219
P S V+ +K L+ MG+T+ENVA ++G++R+EQD+ A+
Sbjct: 119 APYVLPASRVGARMGDAKLVDTMLKDGLTDAFNLIHMGITAENVAKKYGISREEQDEFAL 178
Query: 220 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
S +KAAAA AGKFKDEI+PV K KP+ + D+GIRP T++ LAKLKP
Sbjct: 179 RSQQKAAAAQKAGKFKDEIVPVTI-----KGRKGKPLVVDKDEGIRPGTTLESLAKLKPA 233
Query: 280 FKKD-GTTTAGNSSQVSDGAGAVLLMKRS 307
F K+ GT TAGN+S ++DGA AVLLM S
Sbjct: 234 FDKENGTVTAGNASGLNDGAAAVLLMSES 262
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 269 bits (689), Expect = 9e-87
Identities = 137/330 (41%), Positives = 191/330 (57%), Gaps = 26/330 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGF----KDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVL 106
+VV+V+ RTA+ G F KD P DL A V++ + + VDP +VG +V G V+
Sbjct: 4 EVVVVSGVRTAI-----GTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVI 58
Query: 107 APGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 166
+ R+AA AG P+ P VNR C SGLQA+ A AI G D+ IG G E
Sbjct: 59 PTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAE 118
Query: 167 SMT----VNPMAWEGSVNPKVKAFEQAQNCL------LPMGVTSENVAHRFGVTRKEQDQ 216
SM+ + P A G+ K + L + MGVT+ENVA ++G++R+ QD
Sbjct: 119 SMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTIHMGVTAENVAAKYGISREAQDA 178
Query: 217 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 276
A++SHR+AAAA AAG FKD+I+PV K + G+ V D+ +R +T++ +LAKL
Sbjct: 179 LALESHRRAAAAIAAGYFKDQIVPVEIKT---RKGE---VVFDTDEHVRADTTLEDLAKL 232
Query: 277 KPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 335
KPVFKK+ GT TAGN+S ++DGA AV+L + A +GL L +A GVDP MG+
Sbjct: 233 KPVFKKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYMGI 292
Query: 336 GPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
GP A A++ AGL + D+D+ E NE A
Sbjct: 293 GPVPATQKALERAGLTVADLDVIEANEAFA 322
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 264 bits (677), Expect = 4e-85
Identities = 129/318 (40%), Positives = 180/318 (56%), Gaps = 11/318 (3%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
DVVIV A RT + +SK G F++ +DL A ++++++ + +DP+E+ DI+ G V
Sbjct: 3 DVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTL 62
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R AA AG P +VP TVNR C S +QA+ D A AI G D+ + G+E M
Sbjct: 63 EQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMG 122
Query: 170 VNPMAWEGSVNPKV-KAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAA 228
PM +P + K +A MG+T+E + G++R++QD A SH++A AA
Sbjct: 123 HVPMNHGVDFHPGLSKNVAKAAGM---MGLTAEMLGKMHGISREQQDAFAARSHQRAWAA 179
Query: 229 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTT 287
T G+FK+EIIP + D D+ IRP T+V LA L+P F +GT T
Sbjct: 180 TQEGRFKNEIIPT-----EGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVT 234
Query: 288 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS 347
AG SS +SDGA A+L+M S A GL R+ A G DP+IMG GP A A+K
Sbjct: 235 AGTSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKR 294
Query: 348 AGLQLDDIDLFEINEVVA 365
AGL + DID+FE+NE A
Sbjct: 295 AGLSISDIDVFELNEAFA 312
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 258 bits (660), Expect = 1e-82
Identities = 137/326 (42%), Positives = 194/326 (59%), Gaps = 17/326 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ VIV+ RT L KS RG F T+ L V++ +E+ +DP+EV D+++G G+
Sbjct: 3 EAVIVSTARTPLAKSWRGAFNMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGA 62
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
A+ R A AG P TVP TVNR CSSGLQ +A A + AG D+ + G+ES++
Sbjct: 63 TGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISC 122
Query: 171 ------NPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 224
M EG + E M T+ENVA R+G++++ QD+ V S ++
Sbjct: 123 VQNEMNRHMLREGWLV------EHKPEIYWSMLQTAENVAKRYGISKERQDEYGVQSQQR 176
Query: 225 AAAATAAGKFKDEIIP--VATKIVDPKTGD--EKPVTISVDDGIRPNTSVSELAKLKPVF 280
AAAA AAG+F DEI+P V + D TG K VT+S D+GIRP+T++ ++K++
Sbjct: 177 AAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSAL 236
Query: 281 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA 340
G TAGN+SQ SDGA A ++M VA R+GL LG+FR FA G +P MG+GP A
Sbjct: 237 P-GGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCEPDEMGIGPVFA 295
Query: 341 IPAAVKSAGLQLDDIDLFEINEVVAL 366
+P +K AGL++DDIDL+E+NE A+
Sbjct: 296 VPKLLKQAGLKVDDIDLWELNEAFAV 321
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 249 bits (637), Expect = 4e-79
Identities = 124/329 (37%), Positives = 175/329 (53%), Gaps = 17/329 (5%)
Query: 50 DDVVIVAAYRTALCKSK-----RGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGT 104
+DV +V RTA + + + F + P++L A ++ +IEKT + P E+ DI+ G
Sbjct: 2 EDVYLVDFARTAFSRFRPKDPQKDVFNNIRPEELAAMLINRLIEKTGIKPEEIDDIITGC 61
Query: 105 VLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 164
L G R F A P +P V+RQC+S L V+ A I G DI I G
Sbjct: 62 ALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGG 121
Query: 165 LESMTVNPMAWEGSVNPKVKAFEQAQ------NCLLPMGVTSENVAHRFGVTRKEQDQAA 218
+E MT PM + P K + MG+T+E +A G+ R+E D+ +
Sbjct: 122 VEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTAEKLAEEAGIKREEMDRWS 181
Query: 219 VDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 278
+ SH+ AA A G FKDEI+P+ ++ + K + VD +RP+TS+ +LAKL P
Sbjct: 182 LRSHQLAAKAIQEGYFKDEILPIEVEV------EGKKKVVDVDQSVRPDTSLEKLAKLPP 235
Query: 279 VFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPA 338
FK DG TAGNSS ++ GA VLLM + + GL + R+F GV PAIMG GP
Sbjct: 236 AFKPDGVITAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVPPAIMGKGPV 295
Query: 339 VAIPAAVKSAGLQLDDIDLFEINEVVALV 367
A A++ AGL + DIDL+EINE A+V
Sbjct: 296 PASKKALEKAGLSVKDIDLWEINEAFAVV 324
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 247 bits (633), Expect = 2e-78
Identities = 128/331 (38%), Positives = 174/331 (52%), Gaps = 24/331 (7%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT--NVDPSEVGDIVVGTVL 106
DV IV A RT K G + + L A ++ A +E+ +VD ++V D+++G VL
Sbjct: 1 MRDVAIVGAGRTPFGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVL 60
Query: 107 APGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 166
G Q + R AA AG P +VP TVNR C+SGL AV A AI +G D+ + G+E
Sbjct: 61 QAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVE 120
Query: 167 SMTVNPMAWEGS------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 220
M+ PM EG V+P + MG+T+E A R+G++R++QD+ AV
Sbjct: 121 KMSDAPMGREGVRVLDSAVDPMFEDPLGDATPGYLMGLTAERYAKRYGISREDQDEVAVK 180
Query: 221 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS-VSE-LAKLKP 278
SH+ AAA AG F DEI P D + D R + S S+ A L P
Sbjct: 181 SHKNAAANPKAGFF-DEITPE----------DVLNSPVVADPLRRLDCSPTSDGAAALVP 229
Query: 279 VFKK-DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 337
F++ GT TAGN+S ++DGA A+LLM S A GL L R +A GVDP+IM GP
Sbjct: 230 AFEEVGGTVTAGNASGINDGAAALLLMSESKAKELGLAPLAAIRAYAMAGVDPSIM-DGP 288
Query: 338 AVAIPAAVKSAGLQ-LDDIDLFEINEVVALV 367
A+ A+ AGL L+D+ L E E A V
Sbjct: 289 VAAVHDALTIAGLLALEDLGLAEKGEAFAAV 319
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 238 bits (609), Expect = 9e-75
Identities = 126/333 (37%), Positives = 180/333 (54%), Gaps = 25/333 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
D VI RT + + G FKD ++L A V++A++E+T +DP+ + D++ G P
Sbjct: 3 DAVICEPVRTPVGRFG-GAFKDVPAEELAATVIRALVERTGIDPARIDDVIFGQGY-PNG 60
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT- 169
+ + R+AA AG P TVP ++R+C SGLQAV A ++ G D+ I G ESM+
Sbjct: 61 EAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSN 120
Query: 170 ----VNPMAW---EGSVNPK---VKAFEQAQNCLLP----MGVTSENVAHRFGVTRKEQD 215
M W G V + E A P M T+EN+ +G++R+EQD
Sbjct: 121 VEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRRFPVPGGMIETAENLRREYGISREEQD 180
Query: 216 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 275
AV SH++A AA AG+F DEI+PV V + GD P + D+ R +T++ LAK
Sbjct: 181 ALAVRSHQRAVAAQEAGRFDDEIVPVT---VPQRKGD--PTVVDRDEHPRADTTLESLAK 235
Query: 276 LKPVFKK---DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI 332
L+P+ K + T TAGN+S +D A A L+ A GL L ++A GV+P+
Sbjct: 236 LRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEPSR 295
Query: 333 MGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
MG+GP A A+ AGL LDDIDL E+NE A
Sbjct: 296 MGIGPVPATEKALARAGLTLDDIDLIELNEAFA 328
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 235 bits (602), Expect = 6e-74
Identities = 127/326 (38%), Positives = 191/326 (58%), Gaps = 18/326 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIVAA RTA+ S +G + +L A V++ ++E+T +DP++V ++++G VL G+
Sbjct: 3 DVVIVAATRTAI-GSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGA 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ + R AA AG P +VP T+N+ C SGL+A+ A AI+ G ++ I G E+M++
Sbjct: 62 GQ-NPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSL 120
Query: 171 NPMAWEGSVNPKVKAFEQAQNCLLP-----------MGVTSENVAHRFGVTRKEQDQAAV 219
P G+ Q + ++ MG+T+EN+ ++G++R+ QD A
Sbjct: 121 APYVLPGARTGLRMGHAQLVDSMITDGLWDAFNDYHMGITAENLVEKYGISREAQDAFAA 180
Query: 220 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
S +KA AA AG+F DEI P+ ++ + G+ P+ + D+ R T+ LAKLKP
Sbjct: 181 ASQQKAVAAIEAGRFDDEITPI---LIPQRKGE--PLAFATDEQPRAGTTAESLAKLKPA 235
Query: 280 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV 339
FKKDG+ TAGN+S ++DGA AVLLM + A GLP+L +A GVDPAIMG+GP
Sbjct: 236 FKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGVDPAIMGIGPVS 295
Query: 340 AIPAAVKSAGLQLDDIDLFEINEVVA 365
A + AG L ++DL E NE A
Sbjct: 296 ATRRCLDKAGWSLAELDLIEANEAFA 321
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 222 bits (567), Expect = 6e-69
Identities = 130/317 (41%), Positives = 172/317 (54%), Gaps = 9/317 (2%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G F++T +DL A ++ ++ + VDP+EV DI G V
Sbjct: 1 DVVIVDFGRTPMGRSKGGAFRNTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTL 60
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R AA A P T TVNR C S +QA+ D A AI G D+ + G+E M
Sbjct: 61 EQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMG 120
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 229
PM +P + + MG+T+E + G++R++QD A SH +A AAT
Sbjct: 121 HVPMMHGVDFHPGMSLHVAKAAGM--MGLTAEMLGKMHGISREQQDAFAARSHARAHAAT 178
Query: 230 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTA 288
GKFK+EIIP D G K D+ IRP T+V LA L+P F K+GT TA
Sbjct: 179 QEGKFKNEIIPTQGHDAD---GFLK--QFDYDEVIRPETTVESLAALRPAFDPKNGTVTA 233
Query: 289 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 348
G SS +SDGA A+L+M A GL R+ A G DP+IMG GP A A+K A
Sbjct: 234 GTSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKRA 293
Query: 349 GLQLDDIDLFEINEVVA 365
GL + DID+FE+NE A
Sbjct: 294 GLSISDIDVFELNEAFA 310
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 222 bits (569), Expect = 7e-69
Identities = 128/323 (39%), Positives = 172/323 (53%), Gaps = 39/323 (12%)
Query: 68 GGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFP 126
G DDL A LKA++ + VD V D++ G G + RM+A AG P
Sbjct: 19 GALSSVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLP 78
Query: 127 ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP-------------- 172
+VP T+NR C SG+ AV A AIKAG ++ I G+ESM+ P
Sbjct: 79 VSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQA 138
Query: 173 ------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 226
+ W VNP +KA Q + M T+ENVA + ++R +QD A+ S ++AA
Sbjct: 139 EIFDTTIGWR-FVNPLMKA----QYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAA 193
Query: 227 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT 286
AA AAG +EI+PV + K GD PV + D+ RP T++ LAKLKPVF+ DGT
Sbjct: 194 AAQAAGFLAEEIVPVT---IPQKKGD--PVVVDRDEHPRPETTLEALAKLKPVFRPDGTV 248
Query: 287 TAGNSSQVSDGAGAVLLMKRSVAMRKGLP----ILGVFRTFAAVGVDPAIMGVGPAVAIP 342
TAGN+S V+DGA A+LL + A + GL ILG A GV+P IMG+GPA A
Sbjct: 249 TAGNASGVNDGAAALLLASEAAAKKHGLTPRARILG----MATAGVEPRIMGIGPAPATR 304
Query: 343 AAVKSAGLQLDDIDLFEINEVVA 365
+ GL +D D+ E+NE A
Sbjct: 305 KLLARLGLTIDQFDVIELNEAFA 327
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 218 bits (556), Expect = 6e-67
Identities = 125/336 (37%), Positives = 174/336 (51%), Gaps = 32/336 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
+ I A RT + + G DDL A +KA++ + +D + + D++ G G
Sbjct: 2 EAYICDAIRTPIGRYG-GSLSSVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAG 60
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ RMAA AG P +VP TVNR C SGL A+ A AIKAG D+ I G+ESM+
Sbjct: 61 EDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMS 120
Query: 170 VNP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 209
P + W +NP +KA + M T+ENVA FG+
Sbjct: 121 RAPFVMGKADSAFSRSAKIEDTTIGWR-FINPLMKA----LYGVDSMPETAENVAEEFGI 175
Query: 210 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 269
+R++QD A+ S ++ AAA A+G F +EI+PV + K G+ P + D+ RP T+
Sbjct: 176 SREDQDAFALRSQQRTAAAQASGFFAEEIVPVV---IPQKKGE--PTVVDQDEHPRPETT 230
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
+ LAKLKPV + DGT TAGN+S V+DGA A+LL R GL A GV+
Sbjct: 231 LEGLAKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGVE 290
Query: 330 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
P IMG+GP A + AGL +D D+ E+NE A
Sbjct: 291 PRIMGIGPVPATQKLLARAGLSIDQFDVIELNEAFA 326
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 209 bits (533), Expect = 1e-63
Identities = 120/332 (36%), Positives = 174/332 (52%), Gaps = 30/332 (9%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS-Q 111
VIV+A RT K G KD +L +K +E+ NV +V ++++GTVL G Q
Sbjct: 5 VIVSAARTPFGKFG-GSLKDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQ 63
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 171
S R AA AG P V TVN+ C+SGL+AV I+AG + + G+ESM+
Sbjct: 64 IPS--RQAARAAGIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNA 121
Query: 172 PMAWEGSV------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 215
P G+ + +V AF MGV VA G++R+ QD
Sbjct: 122 PYILPGARWGYRMGDNEVIDLMVADGLTCAFSGVH-----MGVYGGEVAKELGISREAQD 176
Query: 216 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 275
+ A SH++A +A G+F++EI+PV + + GD P+ ++ D+ R +T++ +LAK
Sbjct: 177 EWAYRSHQRAVSAHEEGRFEEEIVPVT---IPQRKGD--PIVVAKDEAPRKDTTIEKLAK 231
Query: 276 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 335
LKPVF K GT TAGN+ V+DGA A++LM A ++G L A+ V+
Sbjct: 232 LKPVFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKDFPR 291
Query: 336 GPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
P AI A ++ G ++DIDLFEINE A V
Sbjct: 292 TPGYAINALLEKTGKTVEDIDLFEINEAFAAV 323
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 205 bits (523), Expect = 5e-62
Identities = 122/345 (35%), Positives = 175/345 (50%), Gaps = 43/345 (12%)
Query: 51 DVVIVAAYRTALCKSKRGG-FKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+ I A RT K K+ G + P L A +L+A+ ++ +D + V D+V+G V G
Sbjct: 3 EAYIYDAVRTPRGKGKKDGSLHEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVG 62
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q A R A AG PETVP +NR C+SGL+AV AA +++G+ D+ I G+ESM+
Sbjct: 63 DQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMS 122
Query: 170 VNPM-----AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 224
PM AW +++P +P G++++ +A ++G +R++ D AV+S ++
Sbjct: 123 RVPMGSDGGAW--AMDPST----NFPTYFVPQGISADLIATKYGFSREDVDAYAVESQQR 176
Query: 225 AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTI-SVDDGIRPNTSVSELAKLKPVFKKD 283
AAAA A G F ++PV D+ +TI D+ +RP T++ LAKLKP F
Sbjct: 177 AAAAWAEGYFAKSVVPVK---------DQNGLTILDHDEHMRPGTTMESLAKLKPSFAMM 227
Query: 284 GTT---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 322
G AGNSS + DGA AVL+ GL
Sbjct: 228 GEMGGFDAVALQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVA 287
Query: 323 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
A +G DP IM GP A A+ AGL +DDIDLFE+NE A V
Sbjct: 288 TATIGSDPTIMLTGPVPATRKALAKAGLTVDDIDLFELNEAFASV 332
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 204 bits (521), Expect = 8e-62
Identities = 121/332 (36%), Positives = 173/332 (52%), Gaps = 25/332 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
D I R+ + G PDDL A V++ ++EK+ ++ D+++G G
Sbjct: 3 DAYIYDGLRSPFGRHA-GALASVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGE 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ R A AG P TVP +TVNR C+SGL AV D A AI G D+ + G+ESM+
Sbjct: 62 DSRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSR 121
Query: 171 NPM-------AWE----------GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKE 213
P A+ G+ P K Q N +P T +NVA FG++R++
Sbjct: 122 APFVMGKAESAFSRDAKVFDTTIGARFPNPKIVAQYGNDSMPE--TGDNVAAEFGISRED 179
Query: 214 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 273
D+ A S K AA G F DEI P+ P+ P ++ D+ RP+++V L
Sbjct: 180 ADRFAAQSQAKYQAAKEEGFFADEITPIEV----PQGRKLPPKLVAEDEHPRPSSTVEAL 235
Query: 274 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 333
KLKP+F+ G TAGN+S ++DGA A+L+ R+ + GL + + AA GV+P IM
Sbjct: 236 TKLKPLFE-GGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVEPRIM 294
Query: 334 GVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
G+GP AI A+ AGL LDD+D+ EINE A
Sbjct: 295 GIGPVEAIKKALARAGLTLDDMDIIEINEAFA 326
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 204 bits (520), Expect = 2e-61
Identities = 125/344 (36%), Positives = 183/344 (53%), Gaps = 42/344 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
+ VIV+ R+ + ++ +G KD PDDL A +++A ++K +DP+++ D+++G L G
Sbjct: 3 EAVIVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGG 62
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R+ A G+ +P TVNR CSS LQ AIKAG D+ I AG+E+++
Sbjct: 63 EQGFNMARVVAVLLGYD-FLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVS 121
Query: 170 V----NPMAWEGSVNPKVKAFEQAQ-------------------NCLLP-----MGVTSE 201
N + + NP F +AQ + LLP MG T+E
Sbjct: 122 RFAKGNSDSLPDTKNP---LFAEAQARTAARAEGGAEAWHDPREDGLLPDVYIAMGQTAE 178
Query: 202 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 261
NVA G++R+EQD+ V S +A A A G F+ EI PV +S D
Sbjct: 179 NVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLP---------DGTVVSTD 229
Query: 262 DGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 321
DG R T+ ++++LKPVF+ DGT TAGN+ ++DGA AV++M + A GL L
Sbjct: 230 DGPRAGTTYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIV 289
Query: 322 TFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
+ G+ P IMG+GP A A+ AG+ +DDIDL EINE A
Sbjct: 290 STGVSGLSPEIMGLGPVEASKQALARAGMSIDDIDLVEINEAFA 333
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 201 bits (514), Expect = 9e-61
Identities = 115/337 (34%), Positives = 172/337 (51%), Gaps = 32/337 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVL-----KAVIEKTNVDPSEVGDIVVGTV 105
DV IV RT + GGF + L A L +A +E+ VDP+ V ++ G V
Sbjct: 2 DVCIVGVARTPI-----GGFLGSL-SSLSATELGSIAIQAALERAGVDPALVQEVFFGNV 55
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 165
L+ +A R AA AG P + TVN+ C+SG++AV A +I+ G D+ + G+
Sbjct: 56 LSANLGQAP-ARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGM 114
Query: 166 ESMTVNPMAWEGSVNPKVKAFEQAQNCLL-----------PMGVTSENVAHRFGVTRKEQ 214
ESM+ P + + + +L MGV +E A ++ ++R+EQ
Sbjct: 115 ESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYNDFGMGVCAELCADQYSISREEQ 174
Query: 215 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 274
D A+ S+ +A AA AG F EI+PV P V + D+G+ +L
Sbjct: 175 DAYAIQSYERAIAAQEAGAFAWEIVPVEV----PGGRGRPSVIVDKDEGLGKFDPA-KLR 229
Query: 275 KLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 333
KL+P FK+D G+ TAGN+S +SDGA A++L+ A+ GL ++ R +A P +
Sbjct: 230 KLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPELF 289
Query: 334 GVGPAVAIPAAVKSAGLQLDDIDLFEINE---VVALV 367
PA+AIP A+K AGL+ +D +EINE VVAL
Sbjct: 290 TTAPALAIPKALKHAGLEASQVDYYEINEAFSVVALA 326
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 201 bits (513), Expect = 1e-60
Identities = 122/336 (36%), Positives = 169/336 (50%), Gaps = 33/336 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
+ I A RT + + G DDL A LKA++E+ +VD + + D++ G G
Sbjct: 3 EAFICDAIRTPIGRYG-GALSSVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAG 61
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ RM+ AG P VP T+NR C SG+ AV A AIK+G + I G+ESM+
Sbjct: 62 EDNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMS 121
Query: 170 VNP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 209
P + W VNP +K + M T+ENVA + V
Sbjct: 122 RAPFVMGKAESAFSRQAEIFDTTIGWR-FVNPLMKQ----LYGVDSMPETAENVATDYNV 176
Query: 210 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 269
+R +QD A+ S +KAA A A G EI+PV + K GD P+ +S D+ R T+
Sbjct: 177 SRADQDAFALRSQQKAARAQADGTLAQEIVPVT---IPQKKGD--PLVVSRDEHPRE-TT 230
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
+ LAKLK V + DGT TAGN+S V+DGA A+LL + A R GL A GV+
Sbjct: 231 LEALAKLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE 290
Query: 330 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
P +MG+GPA A + G+ LD D+ E+NE A
Sbjct: 291 PRVMGIGPAPATQKLLARLGMTLDQFDVIELNEAFA 326
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 199 bits (508), Expect = 5e-60
Identities = 116/328 (35%), Positives = 176/328 (53%), Gaps = 27/328 (8%)
Query: 54 IVAAYRTALCKSKRGG-FKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
IVAA RTA ++GG +P DL A VL A+++++ DP+ + D+++G V G Q
Sbjct: 6 IVAAARTA--GGRKGGRLAGWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQA 63
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
+ R A + PE+VP +++RQC S QA+ A A+ +G DI I AG+ESMT P
Sbjct: 64 TNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVP 123
Query: 173 M-------AWEGSVNPKVKAFEQA-QNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 224
M A G + K E+ +E +A ++G+++ + D+ A+ SH++
Sbjct: 124 MGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQFTGAEMMAKKYGLSKDQLDEFALQSHQR 183
Query: 225 AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDG 284
A AAT AGKFK EI+P ++ D +VD+GIR + ++ +A +K + + G
Sbjct: 184 AIAATQAGKFKAEIVP-----LEITRADGSGEMHTVDEGIRFDATLEGIAGVKLI-AEGG 237
Query: 285 TTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGV-----FRTFAAVGVDPAIMGVGPAV 339
TA +SQ+ DGA V+ V +GL LGV +G DP IM P
Sbjct: 238 RLTAATASQICDGASGVM-----VVNERGLKALGVKPLARIHHMTVIGGDPVIMLEAPLP 292
Query: 340 AIPAAVKSAGLQLDDIDLFEINEVVALV 367
A A+K AG+++DDIDL+E+NE A V
Sbjct: 293 ATERALKKAGMKIDDIDLYEVNEAFASV 320
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 198 bits (504), Expect = 2e-59
Identities = 121/327 (37%), Positives = 173/327 (52%), Gaps = 21/327 (6%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
VIV A RT + K + G + +LL V +AV+++ +DP +V ++ G V G Q
Sbjct: 5 VIVEAVRTPIGK-RNGWLSGLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQS 63
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
+ R A +AG P V T++ QC S QA VA I AG D+GI G+E+M+ P
Sbjct: 64 NNITRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVP 123
Query: 173 M---AWEGSVNPKVKAFEQAQNCLLPMG---VTSENVAHRFGVTRKEQDQAAVDSHRKAA 226
+ A G P+ +++ + M +E +A R G+TR++ D + S R+AA
Sbjct: 124 LGANAGPGRGLPRPDSWD------IDMPNQFEAAERIAKRRGITREDVDAFGLRSQRRAA 177
Query: 227 AATAAGKFKDEIIPVATKIVDPK---TGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 283
A A G+F EI PV ++D + TG+ + VT D G+R +T++ LA LKPV +
Sbjct: 178 QAWAEGRFDREISPVQAPVLDEEGQPTGETRLVT--RDQGLR-DTTMEGLAGLKPVL-EG 233
Query: 284 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPA 343
G TAG SSQ+SDGA AVL M A GL A VG +P GP A
Sbjct: 234 GIHTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPYYHLDGPVQATAK 293
Query: 344 AVKSAGLQLDDIDLFEINEVVA-LVLS 369
++ AG+++ DIDL EINE A +VLS
Sbjct: 294 VLEKAGMKIGDIDLVEINEAFASVVLS 320
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 195 bits (498), Expect = 1e-58
Identities = 114/337 (33%), Positives = 169/337 (50%), Gaps = 53/337 (15%)
Query: 54 IVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRA 113
IV A RT + K ++GG +P DL A VLK ++++T +DP+ V D++ G V G Q
Sbjct: 6 IVDAVRTPVGK-RKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAG 64
Query: 114 SECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 173
+ R + AG PE VP TV+RQC S QA+ A A+ +G D+ + G+++M+ P+
Sbjct: 65 NIARTSWLAAGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPI 124
Query: 174 AWEGSVNPKVKAFEQAQNCLLPMGVT-----SENVAHRFG------------------VT 210
+ A +G T S+ HR+G ++
Sbjct: 125 S-------------SAMTAGEQLGFTSPFAESKGWLHRYGDQEVSQFRGAELIAEKWGIS 171
Query: 211 RKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 270
R+E ++ A++SHR+A AA AG+F +EI+PV ++VD+G R TS+
Sbjct: 172 REEMERFALESHRRAFAAIRAGRFDNEIVPVG--------------GVTVDEGPR-ETSL 216
Query: 271 SELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 330
++A LKP+ + G TA +SQ+SDGA AVLL R GL + G DP
Sbjct: 217 EKMAGLKPLV-EGGRLTAAVASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDP 275
Query: 331 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
M P A A++ GL +DDID+ EINE A V
Sbjct: 276 VFMLTAPIPATRYALEKTGLSIDDIDVVEINEAFAPV 312
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 190 bits (483), Expect = 2e-56
Identities = 111/333 (33%), Positives = 180/333 (54%), Gaps = 36/333 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
V I A RTA S G T L A ++K +++ + +DP+ V ++++G V+ GS
Sbjct: 5 VYITHAKRTAF-GSFMGSLSTTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSG 63
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT-- 169
+ + R +AG P+ VP T+N+ C SGL++VA A +I G +I I G E+M+
Sbjct: 64 Q-NPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLG 122
Query: 170 -----------------VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRK 212
V+ M ++G + F MG+T+EN++ +F ++R+
Sbjct: 123 MHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGVF---------MGITAENISKQFNISRQ 173
Query: 213 EQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSE 272
EQD+ A+ SH+KAA A AG FKDEI+P+ I + D+ +RP+TS+
Sbjct: 174 EQDEFALSSHKKAAKAQLAGIFKDEILPIEVTI------KKTTSLFDHDETVRPDTSLEI 227
Query: 273 LAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI 332
L+KL+P F K+G TAGN+S ++DGA ++++ + L L ++A+ GVDP+I
Sbjct: 228 LSKLRPAFDKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVDPSI 287
Query: 333 MGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
MG P A A+ AG ++D+++ E+NE A
Sbjct: 288 MGTAPVPASQKALSKAGWSVNDLEVIEVNEAFA 320
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 186 bits (474), Expect = 1e-54
Identities = 115/346 (33%), Positives = 173/346 (50%), Gaps = 39/346 (11%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
GD + IV+ RT K + F DL V+ ++ ++ +DP + +V G V+
Sbjct: 4 GDRIAIVSGLRTPFAK-QATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVV-Q 61
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
+ + R G +V+R C++ QAVA+VA +I AG DIGI G +S
Sbjct: 62 MPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSS 121
Query: 169 TVNP-------------MAWEGSVNPKVKAFEQAQ-NCLLP-------------MGVTSE 201
+V P + ++ ++K F + + LLP MG T+E
Sbjct: 122 SVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLRDLLPVPPAVAEYSTGLRMGDTAE 181
Query: 202 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 261
+A +G++R+EQD A SH+ AA A A GK DE V T V P + D
Sbjct: 182 QMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDE---VMTAHVPPYKQ-----PLEED 233
Query: 262 DGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVF 320
+ IR ++++ + AKL+P F +K GT TA NS+ ++DGA AVLLM S A GL LG
Sbjct: 234 NNIRGDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYL 293
Query: 321 RTFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
R++A +D M +GPA A P A++ AGL L D+ L +++E A
Sbjct: 294 RSYAFAAIDVWQDMLLGPAYATPLALERAGLTLADLTLIDMHEAFA 339
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 184 bits (469), Expect = 7e-54
Identities = 118/346 (34%), Positives = 175/346 (50%), Gaps = 43/346 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
V IV RT K+ RGG DL +A++ + P ++ ++++G P
Sbjct: 4 PVYIVDGARTPFLKA-RGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILGCA-MPSP 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
A+ R+ A G E VP TV R C+SG+QA+ AA I G D+ + G+E+M+
Sbjct: 62 DEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSH 121
Query: 171 NPMAWEG-------------SVNPKVKAFEQAQN-----------------CLLPMGVTS 200
P+ + S+ K+ A + + L MG T+
Sbjct: 122 APLLFSEKMVRWLAGWYAAKSIGQKLAALGKLRPSYLAPVIGLLRGLTDPVVGLNMGQTA 181
Query: 201 ENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISV 260
E +AHRFG+TR++ D A SH++ AAA A G+ K E++P+ + D K D
Sbjct: 182 EVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLK-EVVPLFDR--DGKFYDH------- 231
Query: 261 DDGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGV 319
DDG+RP++S+ +LAKLKP F + G TAGNSSQ++DGA +LL + GLP LG
Sbjct: 232 DDGVRPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGR 291
Query: 320 FRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
+DP+ MG+GP A ++ GL L+D+DL+EINE A
Sbjct: 292 IVDSQWAALDPSQMGLGPVHAATPLLQRHGLTLEDLDLWEINEAFA 337
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 174 bits (444), Expect = 6e-51
Identities = 103/316 (32%), Positives = 156/316 (49%), Gaps = 32/316 (10%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
VIV A RT + K K G KD L AP+L + + E+ D+++G V+ PG
Sbjct: 4 VIVEAKRTPIGK-KNGMLKDYEVQQLAAPLLTFLSKGM---EREIDDVILGNVVGPGGNV 59
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
A R++A AG +P T++RQC +GL+A+ I+ G I G+ES + +P
Sbjct: 60 A---RLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSP 116
Query: 173 MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAG 232
+P+ MGV +E VA R+ +TR+ QD+ A S+++ A G
Sbjct: 117 FQNRARFSPETIGDPD-------MGVAAEYVAERYNITREMQDEYACLSYKRTLQALEKG 169
Query: 233 KFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL-AKLKPVFKKDGTTTAGNS 291
+EI+ + D+ I+ + + + KP F +GT TAGNS
Sbjct: 170 YIHEEILSFNGLL---------------DESIKKEMNYERIIKRTKPAFLHNGTVTAGNS 214
Query: 292 SQVSDGAGAVLLMKRSVAMRKGL-PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGL 350
V+DGA AVL+M+ A + G P+L R+ A VGVDP + G GP A+ + +
Sbjct: 215 CGVNDGACAVLVMEEGQARKLGYKPVLRFVRS-AVVGVDPNLPGTGPIFAVNKLLNEMNM 273
Query: 351 QLDDIDLFEINEVVAL 366
+++DID FEINE A
Sbjct: 274 KVEDIDYFEINEAFAS 289
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 168 bits (427), Expect = 4e-48
Identities = 111/340 (32%), Positives = 160/340 (47%), Gaps = 31/340 (9%)
Query: 45 TSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGT 104
T+V D +VI +A RT + + +G F L A + A +E+ + P ++ ++V+G
Sbjct: 2 TAVDQDPIVIASAARTPMA-AFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGC 60
Query: 105 VLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 164
VL P Q + R AA AG P +V TVN+ C SG++A + AG D+ + G
Sbjct: 61 VL-PAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGG 119
Query: 165 LESMTVNPMAWEGSVNPKVKA-----------------FEQAQNCLLPMGVTSENVAHRF 207
+ESMT P + PK + E A + MG +E A +
Sbjct: 120 MESMTNAPY-----LLPKARGGMRMGHGQVLDHMFLDGLEDAYDKGRLMGTFAEECAGEY 174
Query: 208 GVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPN 267
G TR+ QD A++S +A A G F EI PV V K GD I D+
Sbjct: 175 GFTREAQDAFAIESLARAKRANEDGSFAWEIAPVT---VAGKKGD---TVIDRDEQPF-K 227
Query: 268 TSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG 327
+ ++ LKP F K GT TA NSS +SDGA A+++M+ S A R GL L +
Sbjct: 228 ANPEKIPTLKPAFSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFA 287
Query: 328 VDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
P+ P AI + G + ++DLFEINE A+V
Sbjct: 288 QAPSKFTTAPVGAIRKLFEKNGWRAAEVDLFEINEAFAVV 327
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 159 bits (405), Expect = 1e-44
Identities = 109/353 (30%), Positives = 154/353 (43%), Gaps = 44/353 (12%)
Query: 51 DVVIVAAYRT--ALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
+ I+ A RT + K +G +P L A VLKA+ E+ ++ ++V DI+ T
Sbjct: 3 EAYIIDAVRTPRGIGKVGKGALAHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQR 62
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
G Q RMAA AG+ T++R C G+ +V AA I +G D+ I G E M
Sbjct: 63 GKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMM 122
Query: 169 -----TVNPMAWEGSVNPKVKAFEQAQNCLLP---MGVTSENVAHRFGVTRKEQDQAAVD 220
G + + L P GV + +A G+TR+ D ++
Sbjct: 123 SYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQGVCGDAIATMEGITREALDALGLE 182
Query: 221 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 280
S R+AA A G+F ++PV D+ V + ++ RP T+ LA LKP F
Sbjct: 183 SQRRAARAIKEGRFDKSLVPV--------YRDDGSVALDHEEFPRPQTTAEGLAALKPAF 234
Query: 281 KK-------DGTTT-------------------AGNSSQVSDGAGAVLLMKRSVAMRKGL 314
D TT AGNSS V DGA A+LL ++ A + GL
Sbjct: 235 TAIADYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGL 294
Query: 315 PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
A +G DP +M P A + AGL DDIDL+EINE A+V
Sbjct: 295 KPRARIVAMANMGDDPTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVV 347
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 152 bits (385), Expect = 3e-42
Identities = 103/331 (31%), Positives = 163/331 (49%), Gaps = 32/331 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DV IV+A RTA+ K R F L +KAVI+ +DP+ V ++++G V+ G
Sbjct: 3 DVYIVSAKRTAIGKFGRS-FSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGV 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ + AA++AG P V TVN C+SG+ AV A I G D+ I G+E+M+
Sbjct: 62 GQ-NPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSN 120
Query: 171 NPMAWEGSV--NPK---VKAFEQAQNCLLP----------MGVTSENVAHRFGVTRKEQD 215
P + PK K ++ L+ MGV++E A ++G+TR+ D
Sbjct: 121 APFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLIDAFYFEHMGVSAERTARKYGITREMAD 180
Query: 216 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 275
+ +V S+ +A AT +G+F++EI+P + D+GIR T++ +LAK
Sbjct: 181 EYSVQSYERAIRATESGEFRNEIVPFN--------------DLDRDEGIR-KTTMEDLAK 225
Query: 276 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 335
L P F K+G TAGNS+Q+SDG A+++ GL + + + +DP
Sbjct: 226 LPPAFDKNGILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLDFVE 285
Query: 336 GPAVAIPAAVKSAGLQLDDIDLFEINEVVAL 366
P A ++ +D DL E NE ++
Sbjct: 286 APIPATRKLLEKQNKSIDYYDLVEHNEAFSI 316
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 150 bits (382), Expect = 3e-41
Identities = 107/352 (30%), Positives = 157/352 (44%), Gaps = 57/352 (16%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
V I+ R +S G + D D+L L ++++ + +G++V G VL
Sbjct: 8 RVAILGGNRIPFARSN-GAYADASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSR 66
Query: 111 --QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
EC + + + P T P + + C +GL+A VA I G D GI G+++
Sbjct: 67 DFNLTRECVLGSALS--PYT-PAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTT 123
Query: 169 TVNPMAWE-----------------------GSVNPKVKAFEQAQN----CLLPMGVTSE 201
+ P+A G + PK A E +N L MG +
Sbjct: 124 SDAPIAVNEGLRKILLELNRAKTTGDRLKALGKLRPKHLAPEIPRNGEPRTGLSMGEHAA 183
Query: 202 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 261
A +G++R+ QD+ A SH+ AAA G F D I P G + D
Sbjct: 184 ITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFL--------GLTR------D 229
Query: 262 DGIRPNTSVSELAKLKPVFKK--DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGV 319
+ +RP++S+ +LAKLKPVF K T TAGNS+ ++DGA VLL A GLP+L
Sbjct: 230 NNLRPDSSLEKLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAY 289
Query: 320 FRTF--AAV----GVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
AAV G + +M PA A+P + GL L D D +EI+E A
Sbjct: 290 LVDAETAAVDFVHGKEGLLM--APAYAVPRLLARNGLTLQDFDFYEIHEAFA 339
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 142 bits (358), Expect = 6e-38
Identities = 104/347 (29%), Positives = 163/347 (46%), Gaps = 41/347 (11%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLA- 107
G+ + IVA RT + + F DL V+ ++ ++ +DP + +V G V+
Sbjct: 6 GERIAIVAGLRTPFAR-QATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQM 64
Query: 108 PGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLES 167
P + + R G +V R C++ Q+ +VA +I AG DIGI G +S
Sbjct: 65 PEAPNIA--REIVLGTGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADS 122
Query: 168 MTVNPMAWEGSVN------PKVKAFEQAQNCL---------------------LPMGVTS 200
+V P+ + K + Q L MG T+
Sbjct: 123 SSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGLKDLMPVPPAVAEYSTGLSMGQTA 182
Query: 201 ENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISV 260
E +A +G+TR EQD A SH A+ A GK E V T P ++ I+
Sbjct: 183 EQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGE---VMTAFPPPY---KQW--IAE 234
Query: 261 DDGIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGV 319
D+ IR N++++ AKL+P F +K G+ TA NS+ ++DGA AV+LM+ A G+ LG
Sbjct: 235 DNNIRHNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGY 294
Query: 320 FRTFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVA 365
R++A +D M +GP+ A P A++ AGL L D+ L +++E A
Sbjct: 295 IRSYAFTAIDVWQDMLMGPSYATPLALQRAGLALSDLTLIDMHEAFA 341
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 119 bits (300), Expect = 4e-30
Identities = 86/326 (26%), Positives = 129/326 (39%), Gaps = 42/326 (12%)
Query: 55 VAAYRTALCK--SKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQR 112
A TA K + G + + A + A +E V V + +G VL +
Sbjct: 1 AGAAMTAFGKFGGENGADANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVL-GAGEG 59
Query: 113 ASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 172
+ + AA +AG + P +N C SGL+A+A I G + + G E M
Sbjct: 60 QNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME--- 116
Query: 173 MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAG 232
N K K + N R D A+ A AA G
Sbjct: 117 --TSAENNAKEKHIDVLINKY---------------GMRACPDAFALAGQAGAEAAEKDG 159
Query: 233 KFKDEIIPVATKIVDPKTGDEKPVTISVDDGIR--PNTSVSELAKLKPVFKKDGTTTAGN 290
+FKDE K G + + D+ I+ S+ E+AKL+P F K+ TAGN
Sbjct: 160 RFKDEFAKFGVK------GRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGN 213
Query: 291 SSQVSDGAGAVLLMKRSVAMRKGLPI-------LGVFRTFAAVGVDPA----IMGVGPAV 339
+ ++DGA A +LM + A + GL L + A+ D + G GP
Sbjct: 214 ACGLNDGAAAAILMSEAEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIE 273
Query: 340 AIPAAVKSAGLQLDDIDLFEINEVVA 365
A A++ AGL + D+DL E ++ A
Sbjct: 274 AARKALEKAGLGIGDLDLIEAHDAFA 299
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 78.1 bits (193), Expect = 2e-17
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 314 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
L L R++A VGVDPAIMG+GPA AIP A+K AGL ++DIDLFEINE A
Sbjct: 1 LKPLARIRSYATVGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQ 54
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 64.2 bits (157), Expect = 3e-11
Identities = 77/316 (24%), Positives = 116/316 (36%), Gaps = 67/316 (21%)
Query: 75 PDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTV 134
P +L A +A ++ ++P+++ +VVG Q +A Y G P V
Sbjct: 16 PLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAE-YLGLLG-KPATRV 73
Query: 135 NRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE--GSVNPKVKAFEQAQNC 192
+SG AV AAAI +G D+ + G E M+ P E G + +
Sbjct: 74 EAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGG 133
Query: 193 LLPMGVTSENVA----HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV----ATK 244
L P + + A HR+G TR++ + AV +HR AA A +F+ I +
Sbjct: 134 LTPPALYA-LAARRYMHRYGTTREDLAKVAVKNHRNAARNPYA-QFRKPITVEDVLNSRM 191
Query: 245 IVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLM 304
I DP + VSDGA AV+L
Sbjct: 192 IADP-------------------------------------LRLLDCCPVSDGAAAVVLA 214
Query: 305 KRSVAMRKGLP---ILGV-----FRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDID 356
A ILGV + + ++ +A A K AG+ DDID
Sbjct: 215 SEERARELTDRPVWILGVGAASDTPSLSERDDFLSLDAA--RLAARRAYKMAGITPDDID 272
Query: 357 LFE------INEVVAL 366
+ E I E++AL
Sbjct: 273 VAELYDCFTIAELLAL 288
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 48.7 bits (117), Expect = 3e-06
Identities = 76/357 (21%), Positives = 121/357 (33%), Gaps = 105/357 (29%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLA--- 107
DV I+ +T K G D DL +E +D ++ + VG + A
Sbjct: 3 DVAIIGVGQT-----KFGELWDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLF 57
Query: 108 -----PGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIG 162
+ + A YAG R V C+SG A+ A+ +G D+ +
Sbjct: 58 VSQEHIAA-------LIADYAGLAPIPATR-VEAACASGGAALRQAYLAVASGEADVVLA 109
Query: 163 AGLESMT--VNPMA-----------WEGSVNPKVKAFEQAQNCLLPMGVTSENVA----- 204
AG+E MT P A WE G T +
Sbjct: 110 AGVEKMTDVPTPDATEAIARAGDYEWEEF-----------------FGATFPGLYALIAR 152
Query: 205 ---HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 261
H++G T ++ AV +H + A +F+ E I+V+
Sbjct: 153 RYMHKYGTTEEDLALVAVKNHYNGSKNPYA-QFQKE--------------------ITVE 191
Query: 262 DGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR---KGLPILG 318
+ + V++ KL + S ++DGA AV+L A + I
Sbjct: 192 QVLN-SPPVADPLKLL------------DCSPITDGAAAVILASEEKAKEYTDTPVWIKA 238
Query: 319 VFRT--FAAVGVDPAIMGVGPAV-AIPAAVKSAGLQLDDIDLFE------INEVVAL 366
+ A+ + AV A A K AG++ DID+ E I E++A
Sbjct: 239 SGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIAEILAY 295
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 44.1 bits (104), Expect = 9e-05
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 65 SKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMA---AF 121
SK G D +L +K + V +++ +VVG+ + R E A A
Sbjct: 11 SKFGRRDDVSVQELAWESIKEALNDAGVSQTDIELVVVGST----AYRGIELYPAPIVAE 66
Query: 122 YAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM----TVNPMAWEG 177
Y+G VP+R V C++GL A A+ +G D+ I G++ M T +A G
Sbjct: 67 YSGLTGKVPLR-VEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGG 125
Query: 178 SVNPKVKAFEQAQNCLLPMGVTSENVAH--RFGVTRKEQDQAAVDSHRKAAAATAAGKFK 235
+ P H +G T ++ +V +H+ A A F+
Sbjct: 126 RGGNYQWEYHF-YGTTFPTYYALYATRHMAVYGTTEEQMALVSVKAHKYGAMNPKA-HFQ 183
Query: 236 DEI 238
+
Sbjct: 184 KPV 186
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 288 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD----PAIMGVGPAVAIPA 343
DGA A ++ A+R+G + AA PA+ G G A A
Sbjct: 94 GSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARK 153
Query: 344 AVKSAGLQLDDIDLFEINEVVALVLSLIN 372
A++ AGL DID E + + +
Sbjct: 154 ALEGAGLTPSDIDYVEAHGTGTPIGDAVE 182
Score = 37.0 bits (86), Expect = 0.011
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 78 LLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQ 137
L + I + + ++VGT G + + A++ G P +VN+
Sbjct: 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQ-LAYHLGISG-GPAYSVNQA 67
Query: 138 CSSGLQAVADVAAAIKAGFYDIGIGAGLES 167
C++GL A+A ++ G DI + G E
Sbjct: 68 CATGLTALALAVQQVQNGKADIVLAGGSEE 97
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GAGA++L + A+ +G I + PA G G A+ AA+ AG
Sbjct: 231 GEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAG 290
Query: 350 LQLDDID 356
L +DID
Sbjct: 291 LTPEDID 297
Score = 30.3 bits (69), Expect = 1.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
P T C++G A+ D I+ G D+ I G E+ + P+
Sbjct: 154 PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA-AITPLG 197
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 38.7 bits (91), Expect = 0.004
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAV--GVDPAIM---GVGPAVAIPAAVKSAG 349
+G G V+L + S A+R G I V R A G I G A I A AG
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAG 293
Query: 350 LQLDDIDLFE 359
+ DID E
Sbjct: 294 VDPSDIDYVE 303
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 38.5 bits (90), Expect = 0.005
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPET---VPVRT 133
DL V+ + VD ++ + VG G A + + A A VP
Sbjct: 28 DLTREVVDGTLAAAGVDADDIEVVHVGN--FFGELFAGQGHLGAMPATVHPALWGVPASR 85
Query: 134 VNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
C+SG A A ++AG YD+ + G+E M
Sbjct: 86 HEAACASGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 37.8 bits (88), Expect = 0.008
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILG--VFRTFAAVGVDPAIMGVGPAV--AIPAAVKSAGL 350
++GAG ++L + +A+ +G PI G G ++ G + AI A+ AGL
Sbjct: 230 AEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGL 289
Query: 351 QLDDID 356
LDD+D
Sbjct: 290 SLDDLD 295
Score = 28.6 bits (64), Expect = 7.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW 175
P++T C++ L+A+ AI++G DI + G+E ++
Sbjct: 154 PIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSG 199
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 35.2 bits (82), Expect = 0.058
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GAG ++L A +G I + A P G G A A+ AA+ AG
Sbjct: 230 GEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAG 289
Query: 350 LQLDDID 356
L +DID
Sbjct: 290 LSPEDID 296
Score = 30.2 bits (69), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 177
P TV+ C+SG A+ D A I+ G D+ I G E++ + P+ G
Sbjct: 153 PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL-ITPLTLAG 199
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 34.9 bits (81), Expect = 0.063
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 292 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAA 344
S VSDGA A++L A + FR A V DP GP A A
Sbjct: 213 SLVSDGAAALVLADAETARALQRAV--RFRARAHVNDFLPLSRRDPLAFE-GPRRAWQRA 269
Query: 345 VKSAGLQLDDIDLFE 359
+ AG+ LDD+ E
Sbjct: 270 LAQAGVTLDDLSFVE 284
Score = 30.7 bits (70), Expect = 1.4
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 9/128 (7%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
IV T G + L+ V + + + +V I +G A
Sbjct: 1 MMTASIVGWAHT-----PFGKLDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAG 55
Query: 109 GSQRASECRMAAFYAGFPET--VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 166
S + + P P V C++G AV AI+AG I + G E
Sbjct: 56 FSPQDFPASLVL--QADPALRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAE 113
Query: 167 SMTVNPMA 174
MT P A
Sbjct: 114 KMTATPTA 121
>gnl|CDD|221738 pfam12727, PBP_like, PBP superfamily domain. This family belongs
to the periplasmic binding domain superfamily. It is
often associated with a helix-turn-helix domain.
Length = 193
Score = 31.4 bits (72), Expect = 0.49
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 25/58 (43%)
Query: 130 PVRTVNRQCSSGLQAVAD-------------------------VAAAIKAGFYDIGIG 162
+R VNRQ SG + + D VAAA+ +G D G+G
Sbjct: 93 GIRFVNRQRGSGTRVLLDELLRKAGISPEDINGYAREVRSHLAVAAAVASGKADAGLG 150
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 31.9 bits (74), Expect = 0.51
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFR 321
+G G V+L + S A+R G PIL V R
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIR 187
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 32.0 bits (73), Expect = 0.63
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 129 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
PV + C+SG QA+ A I AG D+ + G ++
Sbjct: 76 APVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTT 115
Score = 30.1 bits (68), Expect = 2.3
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 294 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI---------MGVGPAVAIPAA 344
SDGA A+++ +S A R + GV A V P + A+PA
Sbjct: 211 TSDGAAALIVASKSFARRHLGSVAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAP 270
Query: 345 VKS------------AGLQLDDIDLFEI 360
+ AG+ +D+ L E+
Sbjct: 271 ERVFKDQILDAAYAEAGIGPEDLSLAEV 298
>gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 31.9 bits (73), Expect = 0.65
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 296 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA---------IMGVGPAVAIPAAVK 346
+ A AVLL + + GLP+LG+ +G +PA + G G AI AA+
Sbjct: 191 EAAAAVLLGRPAGGEAPGLPLLGL-----GLGREPAPVGESEDLPLRGDGLTQAIRAALA 245
Query: 347 SAGLQLDDIDLF 358
AG L+D+D
Sbjct: 246 EAGCGLEDMDYR 257
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 31.7 bits (73), Expect = 0.72
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 296 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAGL 350
+GAG ++L + A +G I + G PA G G A A+ A+K AG+
Sbjct: 232 EGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGI 291
Query: 351 QLDDID 356
+DID
Sbjct: 292 NPEDID 297
Score = 30.5 bits (70), Expect = 1.5
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
P ++ C++G A+ D A I G D+ + G E+ + P+
Sbjct: 154 PNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEA-AITPLG 197
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.8 bits (70), Expect = 1.2
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVL-A 107
D V I+ C +K G D +DL+ + ++P ++ GT
Sbjct: 6 KDKVAILGMG----C-TKFGERWDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDE 60
Query: 108 PGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 166
GS ++ A P +PV V C++G +A A+ +G YDI + G+E
Sbjct: 61 IGSGKSGTPLSRAL--RLPN-IPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVE 116
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.0 bits (71), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 146 ADVAAAIKAGFYDIGIGAG 164
DVA A+ +G ++IGIGAG
Sbjct: 327 TDVAMALFSGIFNIGIGAG 345
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 30.3 bits (69), Expect = 1.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 317 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVK---SAGLQLDDIDLFEINEVVALVLSLINF 373
L V T G+D + A A A+K +AG +++I E+ E+
Sbjct: 254 LAVPTTVVLDGLDATV-----AAAFERALKRLSAAGAIIEEIAFPELAELAE-------- 300
Query: 374 FNFINATGPFKSCKS 388
INA G F + +S
Sbjct: 301 ---INAKGGFSAAES 312
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 30.5 bits (70), Expect = 1.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 330 PAIMGVGPAVAIPAAVKSAGLQLDDID 356
PA G G A A+ AA+K AG+ +D+D
Sbjct: 270 PAPEGEGAARAMRAALKDAGINPEDVD 296
Score = 29.4 bits (67), Expect = 4.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 138 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
C++G A+ D I+ G D+ I G E+ + P+
Sbjct: 161 CATGTHAIGDAFRLIQRGDADVMIAGGAEA-AITPLG 196
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 29.4 bits (66), Expect = 2.4
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 210 TRKEQDQAAVDSHRK------AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 263
TR+E D A D R+ A+ + +G ++ + DP+ G +KP+ + V +
Sbjct: 22 TREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQKKDPRIGSKKPIPLGVTEK 81
Query: 264 I-RPNTSVSELAKLKP 278
+ + + SE KL P
Sbjct: 82 VTKQHKPKSEKPKLSP 97
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 29.1 bits (66), Expect = 4.1
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 69 GFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPET 128
G Y D+ A +A + +D V VG V S A Y
Sbjct: 17 GASWDY-PDMAAEAGRAALADAGIDYDAVQQAYVGYVYG-----DSTSGQRALYEVGMTG 70
Query: 129 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+P+ VN CS+G A+ A+++G D + G E M
Sbjct: 71 IPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQ 111
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 29.2 bits (66), Expect = 4.6
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 138 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 177
C++G+QA+ D A I++G D+ + G E+ ++ ++ G
Sbjct: 173 CAAGVQAIGDAARLIRSGEADVAVCGGTEA-AIDRVSLAG 211
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 28.8 bits (65), Expect = 5.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 297 GAGAVLLMKRSVAMRKGLPILGVFRTFAAV-----GVDPAIMGVGPAVAIPAAVKSAGLQ 351
GAV+L A R+G ++ G DP++ G I AA++ AGL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSL--EGEMRVIRAALRRAGLG 297
Query: 352 LDDID 356
+DID
Sbjct: 298 PEDID 302
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 28.8 bits (64), Expect = 5.0
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 296 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAVAIPAAVKSAG 349
DGAGA+++ + A+ +G I AA +D A MG G A A A+ AG
Sbjct: 161 DGAGALVVEELEHALARGAHIYAEIVGTAA-TIDGAGMGAFAPSAEGLARAAKEALAVAG 219
Query: 350 LQLDDIDLFE 359
L + DID
Sbjct: 220 LTVWDIDYLV 229
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 29.2 bits (65), Expect = 5.1
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 229 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 288
+ G +K ++ AT K D +T +V D P +V L+ P G
Sbjct: 408 SKPGTYKLQVTQSATTTNGKKASDTTTLTFAVGDNNDPVGAVGPLSASTPTDGAPGGKGC 467
Query: 289 GNSSQ--VSDGAGA 300
+++ G A
Sbjct: 468 ELAAKGAEGSGKKA 481
>gnl|CDD|179420 PRK02399, PRK02399, hypothetical protein; Provisional.
Length = 406
Score = 28.7 bits (65), Expect = 5.8
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 23/72 (31%)
Query: 83 LKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFP---------------- 126
+ V++ T +EV D + G VLA G R AA G P
Sbjct: 237 IAGVLDLT---TTEVCDELFGGVLAAGPDRL----EAAARTGIPQVVSPGALDMVNFGAP 289
Query: 127 ETVPVRTVNRQC 138
+TVP + R
Sbjct: 290 DTVPEKFRGRLL 301
>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 27.7 bits (62), Expect = 6.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 294 VSDGAGAVLLMKRSVAMRKGLP 315
V D G VLL++RS LP
Sbjct: 9 VRDDEGRVLLIRRSDNGLWALP 30
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase.
Length = 459
Score = 28.6 bits (64), Expect = 6.5
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 82 VLKAVIEKTNVDPSEVGDIVVGT 104
V+K+++EK N+DP ++G + VG+
Sbjct: 60 VVKSLLEKYNIDPKQIGRLEVGS 82
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.1 bits (61), Expect = 6.7
Identities = 8/53 (15%), Positives = 12/53 (22%)
Query: 212 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGI 264
+ AA A + + D GD P D +
Sbjct: 61 AATAPTPPTAEVGAADAPESKAENSAPVQAGDAGQDAAAGDAAPTYQDTADAV 113
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 28.6 bits (64), Expect = 7.8
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAVAIPAAVKSA 348
+GAG V+L + S A R G I V R +AV D G+ A I A+ A
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIR-GSAVNQDGRSNGLTAPNLEAQADVIREALADA 296
Query: 349 GLQLDDIDLFE 359
G+ + E
Sbjct: 297 GIDPATVQYVE 307
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 28.3 bits (63), Expect = 9.1
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 21/109 (19%)
Query: 76 DDLLAPVLKAVIEKTNVDPSE--VGDIVVGTVL-------------APGSQRASECRMAA 120
++LLA ++ +E T +D V +VVG L A GS S A
Sbjct: 49 EELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNAL 108
Query: 121 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Y P V C+SG AV A+ AG DI + G+E T
Sbjct: 109 LYK------PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQT 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,006,652
Number of extensions: 2064133
Number of successful extensions: 2411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2262
Number of HSP's successfully gapped: 102
Length of query: 415
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 316
Effective length of database: 6,546,556
Effective search space: 2068711696
Effective search space used: 2068711696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)