RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014959
(415 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 533 bits (1375), Expect = 0.0
Identities = 296/341 (86%), Positives = 319/341 (93%)
Query: 22 SHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAP 81
+H++ + AGDSAAY RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAP
Sbjct: 2 AHHHHHHVDDDDKMAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAP 61
Query: 82 VLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 141
VL+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSG
Sbjct: 62 VLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSG 121
Query: 142 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 201
LQAVADVAAAIKAGFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSE
Sbjct: 122 LQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSE 181
Query: 202 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 261
NVA RFGV+R+EQDQAAVDSHRKAAAATAAGKFKDEIIPV TK+VDPKTGDEKP+T+SVD
Sbjct: 182 NVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVD 241
Query: 262 DGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 321
DGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFR
Sbjct: 242 DGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFR 301
Query: 322 TFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
TFAAVGVDPAIMG+GPAVAIPAAVK+AGL+LDDIDLFEINE
Sbjct: 302 TFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINE 342
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 505 bits (1302), Expect = e-179
Identities = 179/351 (50%), Positives = 242/351 (68%), Gaps = 11/351 (3%)
Query: 12 LEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFK 71
+ H +S L + A SA DVV+V RTA+C++ RGGFK
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAPQASA---------ADVVVVHGRRTAICRAGRGGFK 51
Query: 72 DTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPV 131
DT PD+LL+ V+ AV++ N+ P ++GDI VG VL PG A R+A F + PETVP+
Sbjct: 52 DTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPG-AGAIMARIAQFLSDIPETVPL 110
Query: 132 RTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQN 191
TVNRQCSSGLQAVA +A I+ G YDIG+ G+ESM++ G++ ++ E+A++
Sbjct: 111 STVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARD 170
Query: 192 CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTG 251
CL+PMG+TSENVA RFG++R++QD A+ S +KAA A + G F+ EI+PV T + D K G
Sbjct: 171 CLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-G 229
Query: 252 DEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 311
++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDGA A+LL +RS A
Sbjct: 230 TKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEE 289
Query: 312 KGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
GLPILGV R++A VGV P IMG+GPA AIP A++ AGL + D+D+FEINE
Sbjct: 290 LGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINE 340
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 467 bits (1204), Expect = e-165
Identities = 142/321 (44%), Positives = 192/321 (59%), Gaps = 18/321 (5%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK----TNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I + D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 165
L G A+E R A +G P + P +NRQCSSGL AV D+A IK G DIG+ G+
Sbjct: 70 LNVG-AGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 166 ESMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 222
ESMT N + +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 223 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 282
+KA A G F+DEI+P+ D+G RPN + L+ ++P F K
Sbjct: 189 QKAYKAKNEGLFEDEILPIKLP---------DGSICQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 283 D-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 341
D GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IMGVGPA AI
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 342 PAAVKSAGLQLDDIDLFEINE 362
P +++ GLQ+ DID+FEINE
Sbjct: 300 PKVLEATGLQVQDIDIFEINE 320
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 377 bits (970), Expect = e-129
Identities = 120/314 (38%), Positives = 168/314 (53%), Gaps = 9/314 (2%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
VVIV A RT + +SK G F++ +DL A ++++++ + ++ + + DI G V
Sbjct: 3 QVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTL 62
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R AA A P +VP TVNR C S +QA+ D A I G + + G+E M
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMG 122
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 229
PM+ +P + MG+T+E ++ G++R+ QDQ A SH +A AAT
Sbjct: 123 HVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHARAWAAT 180
Query: 230 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTA 288
+G FK EIIP D + D+ IRP T+V L+ L+P F GT TA
Sbjct: 181 QSGAFKTEIIPTGGH-----DADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTA 235
Query: 289 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 348
G SS +SDGA A+L+M S A GL R+ A VG DP+IMG GP A A+K A
Sbjct: 236 GTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKA 295
Query: 349 GLQLDDIDLFEINE 362
GL DID+FE+NE
Sbjct: 296 GLSASDIDVFEMNE 309
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 369 bits (951), Expect = e-126
Identities = 124/314 (39%), Positives = 170/314 (54%), Gaps = 9/314 (2%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + RMA+ P T +TV+R C S + A+ A AI G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 229
M V+P A MG+T+E + G++R++QD AV SH+ A AT
Sbjct: 126 HVSMM--HGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 230 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTA 288
GKFKDEIIP+ + D+ IRP+T++ LA LKP F K GT TA
Sbjct: 184 VEGKFKDEIIPMQGY-----DENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238
Query: 289 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 348
G SSQ++DGA +++M A GL L V R+ A GVDPAIMG GP A A+K A
Sbjct: 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRA 298
Query: 349 GLQLDDIDLFEINE 362
GL + DID E+NE
Sbjct: 299 GLNMADIDFIELNE 312
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 337 bits (867), Expect = e-113
Identities = 130/333 (39%), Positives = 178/333 (53%), Gaps = 33/333 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ RMA AGFP V TVNR C SGL+AVA A AI AG + IG+G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 171 NPMAWEGS--------------------VNPKVK-AFEQAQNCLLPMGVTSENVAHRFGV 209
P A VNPK++ + MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGT-----ESMGETAENLAEMYGI 176
Query: 210 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 269
R+EQD+ A+ SH+KA A G+F+DE++PV K ++ + + D+G R +TS
Sbjct: 177 RREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK------RGKEEILVEQDEGPRRDTS 230
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 329
+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV
Sbjct: 231 LEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP 290
Query: 330 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
P IMG+GP A A++ AGL D+ L E+NE
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNE 323
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 333 bits (857), Expect = e-112
Identities = 103/337 (30%), Positives = 158/337 (46%), Gaps = 37/337 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTN-VDPSEVGDIVVGTVLAPG 109
+ I A RT K K G + P +L+ ++ + + +D + + D+++G V G
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVG 67
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q R A AG PET +NR C+SGL+AV A +++G+ D+ + G+ESM+
Sbjct: 68 DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMS 127
Query: 170 VNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 226
PM +G + +P+ + +P G+ ++ +A G +R++ D A+ S +KAA
Sbjct: 128 RVPMGSDGGAWATDPETNY----RIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAA 183
Query: 227 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT 286
AA + G F ++PV V + D+ +RP+T++ LAKLK F G
Sbjct: 184 AAWSGGYFAKSVVPV--------RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEM 235
Query: 287 ---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAA 325
T GNSS + DGA VL+ +GL A
Sbjct: 236 GGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATAT 295
Query: 326 VGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
G DP IM GP A + AGL +DDIDLFE+NE
Sbjct: 296 SGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNE 332
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 329 bits (845), Expect = e-110
Identities = 114/327 (34%), Positives = 180/327 (55%), Gaps = 28/327 (8%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++G + +
Sbjct: 6 NVVITAAVRSPI-GTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCI-QRT 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
A+ R AA AGFP+TV T+ RQCSSG+QA+ A I+ G ++ + G+E+M+
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSS 123
Query: 171 NPMAWEGS------VNPKVK---------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 215
+P A + + +++ + MG T+EN+ ++ +TR+EQD
Sbjct: 124 SPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHH-----IMMGETAENLVEQYEITREEQD 178
Query: 216 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 275
+ A+ SH A A +G F D+I+P+ K K V S D+ R + + +LA
Sbjct: 179 EVALRSHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAG 232
Query: 276 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 335
LKP F+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IMG+
Sbjct: 233 LKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGI 292
Query: 336 GPAVAIPAAVKSAGLQLDDIDLFEINE 362
GPA AI ++ L+D DL EINE
Sbjct: 293 GPAPAIRKGLEKVDWSLEDADLLEINE 319
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 323 bits (831), Expect = e-108
Identities = 114/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVL-APG 109
+VVI +A RTA+ G FK +L K I++ N+ P + + ++G VL A
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
Q + R A AG P P T+N C SGL++V+ + I G DI + G E+M+
Sbjct: 67 GQNIA--RQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMS 124
Query: 170 VNPMAWEGS------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKE 213
++P + + F MG+T+EN+A ++ +TR+E
Sbjct: 125 MSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN-----YHMGITAENIAEQWNITREE 179
Query: 214 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 273
QD+ A+ S KA A A GKF +EI+PV K G + + D+ I+P T++ +L
Sbjct: 180 QDELALASQNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKL 233
Query: 274 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 333
AKL+P FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 234 AKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIM 293
Query: 334 GVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
G GP A A+++A + ++DIDL E NE
Sbjct: 294 GYGPVPATKKALEAANMTIEDIDLVEANE 322
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 322 bits (829), Expect = e-108
Identities = 122/328 (37%), Positives = 178/328 (54%), Gaps = 28/328 (8%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPI-GSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTG- 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ R A AG P +VP TVN+ C SGL++V A +I +G D+ I G E+M+
Sbjct: 64 LGQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 171 NPMAWEGS------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 214
P + N + AF Q MG+T+EN+A +F TR+ Q
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ-----YHMGITAENIATKFEFTREMQ 178
Query: 215 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 274
D+ A++S KA A +FK+EI+PV I + G TI D+ + + L+
Sbjct: 179 DKLALESQNKAENAIKNNRFKEEIVPVDVLI---RRGK--IETIDKDEYPKLGMTFEGLS 233
Query: 275 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG 334
KLKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +MG
Sbjct: 234 KLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 335 VGPAVAIPAAVKSAGLQLDDIDLFEINE 362
GP A A+K AGL ++DIDL E NE
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANE 321
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 315 bits (810), Expect = e-105
Identities = 125/332 (37%), Positives = 179/332 (53%), Gaps = 36/332 (10%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P
Sbjct: 3 PSIVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PA 60
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ + R AA AG P+ +N+ C SGL+AVA I G I + G+ESM+
Sbjct: 61 GEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMS 120
Query: 170 VNP-------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVT 210
+ P M +G + AF MG T+ENVA ++ ++
Sbjct: 121 MAPHCAHLRGGVKMGDFKMIDTMIKDGLTD----AFYG-----YHMGTTAENVAKQWQLS 171
Query: 211 RKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 270
R EQD AV S KA AA G+FKDEI+P K G + +T+ D+ IR ++
Sbjct: 172 RDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATL 225
Query: 271 SELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 330
+AKL+P F K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP
Sbjct: 226 DSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDP 285
Query: 331 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE 362
+MG GP A A++ AG ++ D+DL E NE
Sbjct: 286 KVMGTGPIPASRKALERAGWKIGDLDLVEANE 317
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 304 bits (780), Expect = e-100
Identities = 120/341 (35%), Positives = 180/341 (52%), Gaps = 41/341 (12%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
D VVIV+A RT + S G DL + V+K V+++ V P +V +++ G VLA G
Sbjct: 6 DPVVIVSAARTII-GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ R A+ AG P +VP + C SGL+AV +I G I + G+E+M+
Sbjct: 65 -CGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 170 VNP-------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVT 210
P + +G + AF MG+T+ENVA ++ V+
Sbjct: 124 KAPHLAYLRTGVKIGEMPLTDSILCDGLTD----AFHN-----CHMGITAENVAKKWQVS 174
Query: 211 RKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 270
R++QD+ AV S + A AG F EI+PV V + G + + D+ R +++
Sbjct: 175 REDQDKVAVLSQNRTENAQKAGHFDKEIVPVL---VSTRKGL---IEVKTDEFPRHGSNI 228
Query: 271 SELAKLKPVFKKDGTT--TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGV 328
++KLKP F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV
Sbjct: 229 EAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV 288
Query: 329 DPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE---VVAL 366
+P+IMG+GP AI AV AG L+D+D+FEINE V+
Sbjct: 289 EPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSA 329
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 276 bits (709), Expect = 6e-90
Identities = 101/339 (29%), Positives = 163/339 (48%), Gaps = 39/339 (11%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 8 KEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 66
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+A R A AG P + P T+N+ C+SG++A+ + ++ G D+ + G+ESM+
Sbjct: 67 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 170 VNP------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTR 211
P + +G + + + + MG +EN A + + R
Sbjct: 126 NVPYVMNRGSTPYGGVKLEDLIVKDGLTD----VYNK-----IHMGSCAENTAKKLNIAR 176
Query: 212 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVS 271
EQD A++S+ ++ AA AGKF +E+IPV +P + +D S
Sbjct: 177 NEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVT------VKGQPDVVVKEDEEYKRVDFS 230
Query: 272 ELAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 330
++ KLK VF+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 231 KVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEP 290
Query: 331 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINE---VVAL 366
+ P A +K GL+ +DI ++E+NE +V L
Sbjct: 291 IDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVL 329
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGV---FRTFA-AVGVDPAIMGVGPAVAIPAAVKSAGL 350
+ GAG ++M+ +A++ G+PI G+ T +G G G S
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 351 QLDDIDLFEINEVVALVLSLINFF-----NFINATG 381
++++ + + I + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA 1275
Score = 31.0 bits (70), Expect = 1.0
Identities = 52/350 (14%), Positives = 109/350 (31%), Gaps = 94/350 (26%)
Query: 68 GGFKDTYPD--DLLAPVLKAVIEKTNV------DPSEVGDIVVGTVLAPGSQRASECRMA 119
GG P+ + A + K ++E + V + + +V G + A
Sbjct: 729 GGL-QFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRA 787
Query: 120 AFYAGFPETVPVRTVNRQCSSGLQAVADVAAAI-KAGFYDIG-----------IGAGLES 167
FPE P + V + + L+ + D+ I GF ++G G S
Sbjct: 788 NIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFS 847
Query: 168 M-TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 226
+ MAW MG +++ G + VDS K
Sbjct: 848 LEGCVEMAWI-------------------MGF----ISYHNGNLKGRPYTGWVDSKTKEP 884
Query: 227 AATA--AGKFKDEII------PVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKL 276
K++ I+ + ++ + ++K + + V++ + P + E A+
Sbjct: 885 VDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE- 943
Query: 277 KPVFK-KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT------FAA---V 326
FK + G ++ + + SV + KG + + + A
Sbjct: 944 --QFKHQHGDKVD--IFEIPETG------EYSVKLLKGATLY-IPKALRFDRLVAGQIPT 992
Query: 327 GVDPAIMGVGP------------AVAIPA---AVKSAGLQLDDIDLFEIN 361
G + G+ + + A ++G+ ++
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLV--SVVEAFIASGITDPYEMYKYVH 1040
Score = 29.1 bits (65), Expect = 3.6
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
P++T C++ +++V I +G I I G +
Sbjct: 1098 PIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQ 1137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-04
Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 62/194 (31%)
Query: 1 MEKAINRQQVLLEH-LRPSNSSS--HNYESIL---SASACAAGDSAAYHRTSVYG-DDVV 53
MEKA L L P++++ H S L +A A A V + +V
Sbjct: 1739 MEKAAFE--DLKSKGLIPADATFAGH---S-LGEYAALASLAD---------VMSIESLV 1783
Query: 54 -IVAAYRTALCKSKRGGF-KDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+V RG + P D L +I ++P V A SQ
Sbjct: 1784 EVVF---------YRGMTMQVAVPRDELGRSNYGMIA---INPGRVA--------ASFSQ 1823
Query: 112 RASE--CRMAAFYAGFPETVPVRTVN-----RQ--CS---SGLQAVADVAAAIKAGFYDI 159
A + G+ V VN +Q + L V +V IK I
Sbjct: 1824 EALQYVVERVGKRTGW----LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ--KI 1877
Query: 160 GIGAGLESMTVNPM 173
I +S+++ +
Sbjct: 1878 DIIELQKSLSLEEV 1891
Score = 42.3 bits (99), Expect = 3e-04
Identities = 55/331 (16%), Positives = 95/331 (28%), Gaps = 109/331 (32%)
Query: 11 LLEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTAL-------C 63
L +L+ ++ + + +++A A A DS S + + R A+
Sbjct: 263 LRSYLK---GATGHSQGLVTAVAIAETDSWE----SFF-------VSVRKAITVLFFIGV 308
Query: 64 KSKRGGFKDTYPDDLLAP-VLKAVIEKTNVDPS---EVGDIVVGTVLAPGSQRASECRMA 119
+ YP+ L P +L+ +E PS + ++ +Q + +
Sbjct: 309 RCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLSISNL---------TQEQVQDYVN 354
Query: 120 AFYAGFPETVPVRT--VN--RQCS-SG----LQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ P V VN + SG L + KA +GL+ +
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-------PSGLDQSRI 407
Query: 171 NPMAWEGSVNPKVKAFEQAQNCLLPMGV---TS--ENVAHRFGVTRKEQDQAAVDSHRKA 225
P + K+K F N LP+ + + +D + A
Sbjct: 408 -PFSER-----KLK-F---SNRFLPVASPFHSHLLVPASDLI-----NKDLVKNNVSFNA 452
Query: 226 AA------ATAAGK----FKDEIIP-----VATKIVD-PKTGDEKPVTISVDDGIRPNTS 269
T G I + V T K I +D G P
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFG--PG-G 508
Query: 270 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGA 300
S L L + + DG G
Sbjct: 509 ASGLGVL--------------THRNKDGTGV 525
Score = 37.3 bits (86), Expect = 0.010
Identities = 43/219 (19%), Positives = 64/219 (29%), Gaps = 89/219 (40%)
Query: 177 GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 236
GS Q Q MG ++ + ++A D+H FKD
Sbjct: 1625 GS---------QEQG----MG---MDLYKTSKAAQDVWNRA--DNH-----------FKD 1655
Query: 237 EIIPVATKIVDPKTGDEKPVTISVDDG------IRPN-------TSVSELAKLKPVFKKD 283
IV PV +++ G IR N T V K + +FK+
Sbjct: 1656 TYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 284 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT-FAAVGVDPAIMGVGPAVAIP 342
+ + + + LL T F PA+ + A
Sbjct: 1711 NEHS----TSYTFRSEKGLL----------------SATQFT----QPALTLME--KAAF 1744
Query: 343 AAVKSAGLQLDDIDLF------EINEVVAL-----VLSL 370
+KS GL D F E AL V+S+
Sbjct: 1745 EDLKSKGLIPAD-ATFAGHSLGEYA---ALASLADVMSI 1779
Score = 36.6 bits (84), Expect = 0.016
Identities = 54/312 (17%), Positives = 88/312 (28%), Gaps = 131/312 (41%)
Query: 25 YESILSASACAAGDSAAYHRTSVYG---DDVV------------------IVAAYRTALC 63
Y++ S +A + A H YG D+V I Y +
Sbjct: 1636 YKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 64 KSKRGG-------FKD--------TY--PDDLLA------PVL----KAVIE--KTNVDP 94
++ G FK+ T+ LL+ P L KA E K
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK----- 1748
Query: 95 SEVGDIVVGTVLAPG------SQRASECRMAAFYAG---FPETVPVRTVN-RQCSSGLQA 144
G I A G + A +A+ A V V R G
Sbjct: 1749 -SKGLIPADATFA-GHSLGEYA--A----LASL-ADVMSIESL--VEVVFYR----G-MT 1792
Query: 145 VADVAAAIKAGFYDIGIGAGLESMTVNP--MAWEGS---VNPKVKAFEQAQNCLLPMGVT 199
+ + G + G+ A +NP +A S + V+ + L+
Sbjct: 1793 MQVAVPRDELGRSNYGMIA------INPGRVAASFSQEALQYVVERVGKRTGWLV----- 1841
Query: 200 SE----NVAHRFGVTRKEQ-----DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKT 250
E NV + +Q D A+D K + I +
Sbjct: 1842 -EIVNYNVEN-------QQYVAAGDLRALD-----TVTNVLNFIKLQKIDII-------- 1880
Query: 251 GDEKPVTISVDD 262
E ++S+++
Sbjct: 1881 --ELQKSLSLEE 1890
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 348
++GAG ++L + S A R+G P+L V R +AV D A G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 349 GLQLDDIDLFE 359
G++ D+D E
Sbjct: 322 GVRAGDVDYVE 332
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 348
S+G VLL + S A R G +L V R +A+ D A G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 349 GLQLDDIDLFE 359
GL+ D+D E
Sbjct: 300 GLEPGDVDAVE 310
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 38.8 bits (90), Expect = 0.003
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 350
S G G ++M +A+ G+PI G+ + +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 351 QLDDID 356
L DI
Sbjct: 1414 PLLDIK 1419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.039
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 305 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 346
K+++ K L + +A D A PA+AI A ++
Sbjct: 19 KQAL---KKLQ--ASLKLYAD---DSA-----PALAIKATME 47
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 64 KSKRGGFKDTY-PDDLLAPVLKAVIE 88
K + K Y D A +KA +E
Sbjct: 23 KKLQASLK-LYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 4.2
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 115 ECRMAAFYAGFPETVPVRTVN 135
+ + YA ++ P +
Sbjct: 26 QASLK-LYA--DDSAPALAIK 43
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 34.1 bits (78), Expect = 0.085
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 199 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVT 257
SE +T E D V + + A AAG ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFT 270
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 33.8 bits (77), Expect = 0.10
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNR 136
L + I++ S + ++ + ++ +A P V
Sbjct: 127 RLAKEAAEKAIQEWGQSKSGITHLIFCST-TTPDLPGADFEVAKLLGLHPSVKRVGVFQH 185
Query: 137 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 171
C +G + + + E+ V
Sbjct: 186 GCFAGGTVLRMAKDLAENNRGARVLVICSETTAVT 220
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 32.6 bits (74), Expect = 0.26
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 350
+ GAG ++M+ +A++ G+PI G+ A +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 351 QLDDIDLFEINEVVALVLSLIN 372
++++ + + I
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIK 1460
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 32.1 bits (74), Expect = 0.31
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 350 LQLDDID 356
++ I
Sbjct: 307 IEASQIG 313
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 32.1 bits (74), Expect = 0.31
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+G+G ++L + A+ +G I G +A P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 350 LQLDDIDLFEIN 361
L+ + + IN
Sbjct: 296 LKPEMVSY--IN 305
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 32.1 bits (74), Expect = 0.32
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 350 LQLDDIDLFEIN 361
+ + + IN
Sbjct: 290 IAPEQVGY--IN 299
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 32.1 bits (72), Expect = 0.36
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASE-CRMAAFYAGFPETVPVRTVN 135
+ + +++EK +DP ++G + VG+ ++ + M F V
Sbjct: 54 SMSFNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDST 113
Query: 136 RQCSSGLQAVADVAAAIKAGFYDIGIGAGLES 167
C G A+ + +++ +D G + +
Sbjct: 114 NACYGGTAALLNCVNWVESNSWDGRYGLVICT 145
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 31.8 bits (73), Expect = 0.38
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GAG +++ A +G I + G PA G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 350 LQLDDID 356
++ D+
Sbjct: 316 IEPKDVQ 322
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 31.7 bits (73), Expect = 0.45
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GAG V+L + A +G I + A G PA G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 350 LQLDDID 356
L D +D
Sbjct: 292 LTPDKVD 298
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 31.3 bits (72), Expect = 0.55
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
++GA +L A+ +G I +A G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 350 LQLDDID 356
DID
Sbjct: 298 TDATDID 304
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 30.4 bits (69), Expect = 1.0
Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 25/134 (18%)
Query: 43 HRTSVYGDDVVIVAAYRTALCKSKRGGFKD----TYPDD-------------LLAPVLKA 85
+T + + + + ++ K K G +Y + L+ +++
Sbjct: 6 KQTWEFENPLFVNSSGTAVGPKEKEGPLGHLFDKSYDEMHCNQKNWEMAERKLMEDAVQS 65
Query: 86 VIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAV 145
+ K N+ ++ + G +L + A Y +P + CS+ ++++
Sbjct: 66 ALSKQNLKKEDIDIFLAGDLLNQN--------VTANYVARHLKIPFLCLFGACSTSMESI 117
Query: 146 ADVAAAIKAGFYDI 159
A +A I GF
Sbjct: 118 AISSALIDGGFAKR 131
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 30.6 bits (70), Expect = 1.1
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 348
+GA ++L + A+++ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 349 GLQLDDID 356
G+Q ++I
Sbjct: 315 GVQPEEIS 322
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 30.3 bits (68), Expect = 1.3
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGT---VLAPGSQRASECRMAAFYAGFPETVPVRT 133
+L I++ S++ ++V V PG ++ ++ P
Sbjct: 100 ELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPG----ADYQLTKLLDLDPSVKRFMF 155
Query: 134 VNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 171
+ C +G + + + E T
Sbjct: 156 YHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTC 193
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 30.2 bits (69), Expect = 1.5
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 350 LQLDDID 356
+ + +D
Sbjct: 323 VAPEQVD 329
Score = 27.5 bits (62), Expect = 9.4
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 138 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
C++ +QA+ D I+ G D+ + G E+ + ++
Sbjct: 193 CAASVQAIGDAMRMIRTGEADVVLAGGAEA-AFDKVS 228
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 30.2 bits (69), Expect = 1.7
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD-PAIMGV----GPA---VAIPAAVK 346
S+G AVLL K+S+A R + A D GV G + I + +
Sbjct: 227 SEGVVAVLLTKKSLARR----VYATILN-AGTNTDGFKEQGVTFPSGDIQEQL-IRSLYQ 280
Query: 347 SAGLQLDDIDLFE 359
SAG+ + + E
Sbjct: 281 SAGVAPESFEYIE 293
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 30.0 bits (67), Expect = 1.7
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNR 136
L IE+ SE+ +V T +++ + A G V +
Sbjct: 117 ALGTEAAVKAIEEWGRPKSEITHLVFCTS-CGVDMPSADFQCAKLL-GLHANVNKYCIYM 174
Query: 137 Q-CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 171
Q +G + + + E +
Sbjct: 175 QGAYAGGTVMRYAKDLAENNRGARVLVVCAELTIMM 210
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.9 bits (67), Expect = 1.9
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 229 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG---IRPNTSVSELAKLKPVFKKDGT 285
T G + +IP A + G+++ V +G I ++S A ++ + + GT
Sbjct: 251 TPQGDVQSRVIP-AGNLYIS--GEKRRGEADVAEGAEAIM--QAMSACAPVRDIRGEPGT 305
Query: 286 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAVAIP 342
G +V + L ++ +L V TF V + G AV +
Sbjct: 306 HAGGMLERVRKVMAS--LTGHEMSAIYIQDLLAV-DTFIPRKVQGGMAGECAMENAVGMA 362
Query: 343 AAVKSAGLQLDDI 355
A VK+ LQ+ I
Sbjct: 363 AMVKADRLQMQVI 375
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 29.8 bits (68), Expect = 2.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 348
+GAG V+L + A+ +G I + G D P G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 349 GLQLDDID 356
G+ D+ID
Sbjct: 307 GIVPDEID 314
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 2.0
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM-GV----GPA--VAIPAAVKS 347
++ AVLL K+S+A R + A D + GV G I +
Sbjct: 225 AEAVVAVLLTKKSLARR----VYATILN-AGTNTDGSKEQGVTFPSGDVQEQLIRSLYAP 279
Query: 348 AGLQLDDIDLFE 359
AG + ++ E
Sbjct: 280 AGPDPESLEYIE 291
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.4 bits (67), Expect = 2.3
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+ +L+ A +G L V PA GV A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 350 LQLDDID 356
L DID
Sbjct: 300 LSPADID 306
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.4 bits (67), Expect = 2.4
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+G +L+ A +G IL + V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 350 LQLDDID 356
L DID
Sbjct: 317 LAPGDID 323
Score = 27.5 bits (62), Expect = 8.9
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 130 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
V T C+SG +A+A I G D I G+E+ + +
Sbjct: 179 GVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVET-RIEAVP 222
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 29.5 bits (67), Expect = 2.5
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 294 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKS 347
+ +G+G ++L + A R+G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 348 AGLQLDDID 356
+GL + ID
Sbjct: 307 SGLCPNQID 315
Score = 27.5 bits (62), Expect = 9.6
Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 138 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 174
C++G ++ D I+ G D+ + G ES +++ ++
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES-SIDALS 214
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 29.4 bits (67), Expect = 2.5
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 349
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 350 LQLDDIDLFEIN 361
+ + + +N
Sbjct: 311 ISPEQVAY--VN 320
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 29.2 bits (65), Expect = 3.0
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 43 HRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV 102
R+S+ D +V K F L + + + + P+++ +V
Sbjct: 50 QRSSIGNPDHPLVNKPNPPTVKELHEVFMSDGVP-LAVEASRKAMAEARLVPAQITHMVS 108
Query: 103 GT---VLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGF 156
T PG + +A V S GL A+ A
Sbjct: 109 TTCTDSANPG----YDHYVAKELGLSDRLEKVLLHGIGASGGLAALRTAANLCLGHT 161
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 27.9 bits (62), Expect = 4.7
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 48 YGDDVVIVAAYRTALCKSKRGGFK--DTYPDDLLAPVLKAVIEKTNVDPSEV 97
YG+DVV + + DD + + V EKT + +E+
Sbjct: 17 YGNDVVDESLKSVGW--EPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEI 66
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET:
HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Length = 181
Score = 28.0 bits (62), Expect = 4.8
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 48 YGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEV 97
G V K + +Y + L +++ V ++ N+ +V
Sbjct: 17 CGMSVWN-ELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDV 65
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 28.4 bits (63), Expect = 5.0
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGT---VLAPGSQRASECRMAAFYAGFPETVPVRT 133
+ ++ +D ++V ++ PG + +A +
Sbjct: 139 AYGERAARGALQIAGLDVADVDCLITSNSTTPALPG----LDVALANRL-PLRGDTMLLP 193
Query: 134 VNRQ-CSSGLQAVADVAAAIKAG 155
+ C +G +++A A + A
Sbjct: 194 ATQWACVAGTRSLALAADLVAAD 216
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo
sapiens}
Length = 122
Score = 27.1 bits (59), Expect = 5.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 149 AAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQN 191
+I G ++ E ++ M G NP K FEQ QN
Sbjct: 58 YTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 100
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 27.8 bits (63), Expect = 7.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 334 GVGPAVAIPAAVKSAGLQLDDID 356
G AI A+ AG +D+D
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVD 300
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 27.6 bits (61), Expect = 8.1
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 200 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP--KTGDEKPVT 257
SE G+ R E+D V AA AG F + T ++D K G + T
Sbjct: 258 SEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVLDGRKKDGKDSKFT 316
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 27.5 bits (62), Expect = 9.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 334 GVGPAVAIPAAVKSAGLQLDDID 356
A A+ A++ A L + I
Sbjct: 278 ASTMARAMQLALEDAKLDANAIA 300
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 27.3 bits (61), Expect = 9.9
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 23/96 (23%)
Query: 84 KAVIEKTNVDPSEVGDIVVGTV----LAPGS----QRASECRMAAFYAGFPETVPVRTVN 135
+ IE+ +G ++ P Q A AF +N
Sbjct: 126 EQAIERWGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGLGGFAF-----------DMN 174
Query: 136 RQCSSGLQAVADVAAAIKAGFYD--IGIGAGLESMT 169
CSS + A + G D + + E +
Sbjct: 175 VACSSATFGLKTAADFVGGGSVDAVLMVNP--EICS 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,382,255
Number of extensions: 406185
Number of successful extensions: 1182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1124
Number of HSP's successfully gapped: 105
Length of query: 415
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 319
Effective length of database: 4,021,377
Effective search space: 1282819263
Effective search space used: 1282819263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)