RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014959
(415 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 214 bits (547), Expect = 4e-68
Identities = 101/274 (36%), Positives = 147/274 (53%), Gaps = 18/274 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+VI +A RTA+ G F +T +L A V+ AV+E+ V EV ++++G VL G
Sbjct: 3 PSIVIASAARTAVGS-FNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG 61
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 169
+ + R AA AG P+ +N+ SGL+AVA I G I + G+ESM+
Sbjct: 62 -EGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMS 120
Query: 170 VNPMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAV 219
+ P K+ F+ + MG T+ENVA ++ ++R EQD AV
Sbjct: 121 MAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAV 180
Query: 220 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 279
S KA AA G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P
Sbjct: 181 ASQNKAEAAQKDGRFKDEIVP---FIVKGRKGD---ITVDADEYIRHGATLDSMAKLRPA 234
Query: 280 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKG 313
F K+GT TAGN+S ++DGA A LLM + A R+G
Sbjct: 235 FDKEGTVTAGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 200 bits (508), Expect = 3e-62
Identities = 108/280 (38%), Positives = 148/280 (52%), Gaps = 23/280 (8%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 1 EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 59
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 170
+ RMA AGFP V TVNR C SGL+AVA A AI AG + IG+G+ESM+
Sbjct: 60 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119
Query: 171 NPMAWEGSVNPK----------------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 214
P A V QA MG T+EN+A +G+ R+EQ
Sbjct: 120 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQ 179
Query: 215 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 274
D+ A+ SH+KA A G+F+DE++PV P ++ + + D+G R +TS+ +LA
Sbjct: 180 DRFALLSHQKAVRAWEEGRFQDEVVPV------PVKRGKEEILVEQDEGPRRDTSLEKLA 233
Query: 275 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL 314
L+PVF++ GT TAGNSS ++DGA AVLL+ A GL
Sbjct: 234 ALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 175 bits (443), Expect = 1e-52
Identities = 111/268 (41%), Positives = 153/268 (57%), Gaps = 18/268 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK----TNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I + D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 165
L A+E R A +G P + P +NRQCSSGL AV D+A IK G DIG+ G+
Sbjct: 70 L-NVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 166 ESMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 222
ESMT N + +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 223 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 282
+KA A G F+DEI+P+ D+G RPN + L+ ++P F K
Sbjct: 189 QKAYKAKNEGLFEDEILPI---------KLPDGSICQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 283 D-GTTTAGNSSQVSDGAGAVLLMKRSVA 309
D GTTTAGN+SQVSDG VLL +RSVA
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 169 bits (428), Expect = 1e-50
Identities = 96/262 (36%), Positives = 138/262 (52%), Gaps = 9/262 (3%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAP 108
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 168
Q + RMA+ P T +TV+R C S + A+ A AI G D+ + G+E M
Sbjct: 65 LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
Query: 169 TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAA 228
M V+P A MG+T+E + G++R++QD AV SH+ A A
Sbjct: 125 GHVSMMH--GVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKA 182
Query: 229 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTT 287
T GKFKDEIIP+ + D+ IRP+T++ LA LKP F K GT T
Sbjct: 183 TVEGKFKDEIIPMQGYDENG-----FLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVT 237
Query: 288 AGNSSQVSDGAGAVLLMKRSVA 309
AG SSQ++DGA +++M A
Sbjct: 238 AGTSSQITDGASCMIVMSAQRA 259
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 54.5 bits (131), Expect = 7e-10
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 313 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVAL 366
LP+LG + F VGV P IMGVGPA AIP +++ GLQ+ DID+FEINE A
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAA 55
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 53.8 bits (129), Expect = 1e-09
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 317 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
LG ++A VGVDP +MG GP A A++ AG ++ D+DL E NE A
Sbjct: 4 LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQ 54
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 46.6 bits (110), Expect = 4e-07
Identities = 28/51 (54%), Positives = 32/51 (62%)
Query: 313 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEV 363
GL L V R+ A GVDPAIMG GP A A+K AGL + DID E+NE
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEA 51
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 44.2 bits (104), Expect = 2e-06
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 317 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEVVALV 367
L R A GV P IMG+GP A A++ AGL D+ L E+NE A
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQ 53
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 200 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 259
SE +T E D V + + A AAG ++ E+ V VD + T
Sbjct: 214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGVKV--VDGRKEASSLFTRY 270
Query: 260 VDDGIRPN 267
+ P+
Sbjct: 271 IPIANNPH 278
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 28.5 bits (62), Expect = 1.2
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 137 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 177
+ + GL A+ I+ G + + G++S ++P W
Sbjct: 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSA-LDPWGWVS 197
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 28.2 bits (62), Expect = 1.3
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPILGVFR 321
++GA +L A+ +G I
Sbjct: 20 AEGAAMFVLEDYDSALARGARIHAEIS 46
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 26.5 bits (59), Expect = 1.3
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 233 KFKDEIIPVATKIVDPKTGDEKPVTI------SVDDGIRPNTSVSELA-----KLKP 278
K K I ++ +DP+T P + I SV LKP
Sbjct: 19 KRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKP 75
>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 188
Score = 27.9 bits (62), Expect = 1.6
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 47 VYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEV 97
+YG+DVV + + + DD + + V EKT + +E+
Sbjct: 16 LYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEI 66
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 27.8 bits (62), Expect = 2.2
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 340 AIPAAVKSAGLQLDDIDLFEINEVVALV 367
A+ A+ + D+ +NE ++
Sbjct: 51 ALEQALAKTPWSMSDVSRIYLNEAAPVI 78
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein
PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 26.3 bits (58), Expect = 3.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 347 SAGLQLDDIDLFEINEVVALVLSLINFFN 375
A +LD++ L EIN + +N
Sbjct: 79 EAHAKLDNLTLMEINTSGTFLTQALNHMY 107
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 26.5 bits (57), Expect = 5.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPI 316
+G+G ++L + A R+G I
Sbjct: 249 GEGSGVIVLEEYEHAKRRGAKI 270
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 26.1 bits (56), Expect = 7.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 295 SDGAGAVLLMKRSVAMRKGLPI 316
+ G G V++ + A+ +G I
Sbjct: 232 AGGGGMVVVEELEHALARGAHI 253
>d1ne8a_ b.34.6.2 (A:) PemK-like protein YdcE {Bacillus subtilis
[TaxId: 1423]}
Length = 116
Score = 25.0 bits (54), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 351 QLDDIDLFEINEVVALVLSLINF 373
LDD + +++E + + L+LI+F
Sbjct: 94 HLDDEMMDKVDEALQISLALIDF 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,473,522
Number of extensions: 67227
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 24
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)