Query 014961
Match_columns 415
No_of_seqs 147 out of 174
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 01:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 3E-128 7E-133 935.5 26.6 293 109-401 1-294 (294)
2 cd04185 GT_2_like_b Subfamily 94.7 0.11 2.3E-06 45.8 6.9 100 223-362 78-177 (202)
3 TIGR01556 rhamnosyltran L-rham 94.6 0.17 3.7E-06 47.6 8.4 127 223-358 72-201 (281)
4 cd02510 pp-GalNAc-T pp-GalNAc- 94.4 1.4 3E-05 42.2 14.1 171 223-404 82-263 (299)
5 cd04186 GT_2_like_c Subfamily 94.3 0.098 2.1E-06 43.4 5.5 91 224-358 74-165 (166)
6 cd02526 GT2_RfbF_like RfbF is 93.3 0.16 3.5E-06 45.5 5.4 123 224-358 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 91.6 0.53 1.2E-05 42.1 6.4 193 151-358 3-210 (228)
8 cd02520 Glucosylceramide_synth 90.8 0.31 6.8E-06 43.3 4.1 91 223-357 85-175 (196)
9 cd04195 GT2_AmsE_like GT2_AmsE 89.3 0.28 6.1E-06 42.8 2.5 118 222-356 78-199 (201)
10 cd02525 Succinoglycan_BP_ExoA 89.0 0.79 1.7E-05 40.9 5.2 127 223-358 80-208 (249)
11 PLN02726 dolichyl-phosphate be 88.6 1.4 2.9E-05 40.8 6.7 193 148-358 8-218 (243)
12 cd06433 GT_2_WfgS_like WfgS an 85.4 1.1 2.4E-05 38.2 3.8 37 223-259 74-111 (202)
13 COG1216 Predicted glycosyltran 83.8 5.5 0.00012 38.7 8.3 137 225-363 85-225 (305)
14 cd06421 CESA_CelA_like CESA_Ce 83.2 0.68 1.5E-05 41.2 1.7 125 223-359 83-212 (234)
15 cd06437 CESA_CaSu_A2 Cellulose 80.6 1.1 2.4E-05 40.6 2.1 130 223-362 86-217 (232)
16 cd06442 DPM1_like DPM1_like re 79.4 1 2.2E-05 39.9 1.5 35 223-257 77-111 (224)
17 PF13632 Glyco_trans_2_3: Glyc 75.4 11 0.00023 33.2 6.8 122 227-362 1-127 (193)
18 cd04196 GT_2_like_d Subfamily 73.8 2.1 4.5E-05 37.3 1.9 46 309-358 158-203 (214)
19 cd04188 DPG_synthase DPG_synth 72.9 1.8 3.9E-05 38.7 1.3 35 223-257 81-115 (211)
20 PF10111 Glyco_tranf_2_2: Glyc 70.0 5 0.00011 38.8 3.6 94 153-247 2-111 (281)
21 cd06913 beta3GnTL1_like Beta 1 69.5 4.8 0.0001 36.2 3.2 128 223-359 83-210 (219)
22 PF02434 Fringe: Fringe-like; 67.2 1.9 4.2E-05 41.8 0.2 190 151-365 9-214 (252)
23 PF00535 Glycos_transf_2: Glyc 65.4 5.1 0.00011 32.6 2.4 38 223-260 77-114 (169)
24 cd06439 CESA_like_1 CESA_like_ 64.9 3.2 6.9E-05 37.8 1.1 40 223-262 108-147 (251)
25 cd06434 GT2_HAS Hyaluronan syn 64.0 3.9 8.5E-05 36.6 1.5 62 199-263 55-116 (235)
26 PF03672 UPF0154: Uncharacteri 60.9 5.1 0.00011 32.6 1.5 17 32-48 3-19 (64)
27 PTZ00260 dolichyl-phosphate be 60.9 7 0.00015 39.2 2.8 186 150-353 71-287 (333)
28 cd06420 GT2_Chondriotin_Pol_N 57.4 28 0.00061 29.7 5.6 26 223-248 78-103 (182)
29 cd02522 GT_2_like_a GT_2_like_ 56.5 26 0.00057 30.9 5.4 40 223-262 71-110 (221)
30 cd06435 CESA_NdvC_like NdvC_li 56.3 6.5 0.00014 35.4 1.6 123 224-355 84-206 (236)
31 PF13506 Glyco_transf_21: Glyc 53.5 6 0.00013 36.2 0.9 124 223-361 30-156 (175)
32 PRK01844 hypothetical protein; 50.1 9.8 0.00021 31.6 1.5 15 33-47 11-25 (72)
33 PF01762 Galactosyl_T: Galacto 49.0 51 0.0011 30.0 6.2 176 134-342 6-186 (195)
34 PRK13915 putative glucosyl-3-p 45.6 84 0.0018 31.3 7.6 143 223-395 114-268 (306)
35 cd00761 Glyco_tranf_GTA_type G 42.7 21 0.00046 28.0 2.4 22 224-245 77-98 (156)
36 cd06423 CESA_like CESA_like is 42.5 16 0.00034 29.5 1.6 38 224-261 78-116 (180)
37 PF13712 Glyco_tranf_2_5: Glyc 42.3 40 0.00088 32.0 4.6 31 223-253 53-85 (217)
38 PF14654 Epiglycanin_C: Mucin, 41.7 14 0.0003 32.6 1.3 29 24-52 9-42 (106)
39 PRK11677 hypothetical protein; 41.0 16 0.00034 33.3 1.6 20 32-51 6-25 (134)
40 PF06295 DUF1043: Protein of u 39.8 16 0.00035 32.4 1.4 20 32-51 2-21 (128)
41 PRK00523 hypothetical protein; 39.7 18 0.00039 30.2 1.5 15 33-47 12-26 (72)
42 PF09258 Glyco_transf_64: Glyc 39.3 36 0.00079 33.2 3.9 93 158-252 8-103 (247)
43 cd04184 GT2_RfbC_Mx_like Myxoc 38.6 25 0.00054 30.6 2.4 37 223-259 82-119 (202)
44 cd04192 GT_2_like_e Subfamily 37.5 26 0.00057 30.8 2.4 38 223-260 81-118 (229)
45 cd06427 CESA_like_2 CESA_like_ 33.1 41 0.00088 30.9 3.0 38 223-260 83-122 (241)
46 PF12072 DUF3552: Domain of un 31.2 22 0.00048 33.5 0.9 18 33-50 3-20 (201)
47 TIGR03469 HonB hopene-associat 30.9 47 0.001 33.6 3.3 125 225-356 134-260 (384)
48 PRK14583 hmsR N-glycosyltransf 30.6 1.4E+02 0.003 30.9 6.6 97 149-250 75-181 (444)
49 PF11688 DUF3285: Protein of u 27.9 31 0.00067 26.4 1.0 27 23-50 16-42 (45)
50 PF12996 DUF3880: DUF based on 26.3 32 0.0007 27.8 1.0 16 219-234 13-28 (79)
51 PF07976 Phe_hydrox_dim: Pheno 25.8 1E+02 0.0023 28.3 4.3 72 118-197 33-125 (169)
52 KOG3708 Uncharacterized conser 24.9 32 0.00069 38.2 0.9 34 215-248 88-121 (681)
53 PF12621 DUF3779: Phosphate me 24.1 43 0.00093 28.3 1.3 44 214-261 34-77 (95)
54 PRK05454 glucosyltransferase M 24.0 1.6E+02 0.0034 33.4 6.0 109 148-258 123-255 (691)
55 PF13807 GNVR: G-rich domain o 23.5 68 0.0015 25.9 2.4 16 34-49 60-75 (82)
56 PRK10073 putative glycosyl tra 21.7 83 0.0018 31.4 3.0 105 149-258 6-119 (328)
57 cd06438 EpsO_like EpsO protein 21.6 90 0.002 27.3 3.0 29 223-251 80-108 (183)
58 TIGR03472 HpnI hopanoid biosyn 20.6 68 0.0015 32.3 2.2 124 223-357 125-251 (373)
59 cd00505 Glyco_transf_8 Members 20.5 1.4E+02 0.0031 28.1 4.2 87 150-248 31-118 (246)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.3e-128 Score=935.53 Aligned_cols=293 Identities=65% Similarity=1.194 Sum_probs=287.5
Q ss_pred eeccCCCCCCCCCCCcceecCCccccccccCCCCCCCCCCCceEEEEEeccccccchHHHHhccCCCcEEEEEEECCCCC
Q 014961 109 IWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTT 188 (415)
Q Consensus 109 ~~~~~~p~g~e~lP~giv~~~sd~~l~rLwg~p~~d~~~~~kyLva~~VG~kqk~~Vd~~v~kf~~nFdv~LfhYDG~v~ 188 (415)
||++++|+|+|+||+|||+++|||+||||||.|.+|...++|||||||||+|||++||++|+||++|||||||||||+++
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cccccccCCcceEEEEeccccccccccccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCC-c
Q 014961 189 EWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKG-L 267 (415)
Q Consensus 189 ~W~d~~Ws~~aihv~~~kqtKWw~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~-i 267 (415)
+|++|+||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeeeecCCcceeeeeccCCCCCCCCCCCCcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeE
Q 014961 268 TWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKI 347 (415)
Q Consensus 268 sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kI 347 (415)
||++|+|++++++||.+.+++++|+++++||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki 240 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI 240 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEeeeeeeecccCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014961 348 GVVDSQWIVHQTVPSLGNQGESKDGKAPWQGVRERCKKEWTMFQGRMANAEKAY 401 (415)
Q Consensus 348 GVVDa~~VvH~gvPtLg~~g~~~~~~~~~~~VR~r~~~E~~~F~~R~~~A~k~~ 401 (415)
||||||||+|+++||||+||.++++.++|.+||+||++||++|++||++|+|+|
T Consensus 241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999989999999999999999999999999999987
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.72 E-value=0.11 Score=45.82 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=67.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccE
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 302 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 302 (415)
+.+||+++.|+|..++.-.++++.+.++..++.+..|....... ++.++
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 126 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVGV 126 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEEE
Confidence 57999999999999998888888888775555555443322110 11122
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccCc
Q 014961 303 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPS 362 (415)
Q Consensus 303 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvPt 362 (415)
+++|++|+.+ ..+. +.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus 127 ------~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 127 ------LISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred ------EEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 4889999766 3332 33457888877765555456788 99999999975544
No 3
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.61 E-value=0.17 Score=47.65 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=73.8
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHh--CCcccCCCcc-CCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPGLE-PNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPC 299 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPALd-~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 299 (415)
+.+|||++.|||..++.-.++++++.+++. +.-+..|..- .+.....+...... ... +... ..+.+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDG-LLL-RQIS-----LDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecc-cce-eeec-----ccccCCcee
Confidence 379999999999999988899999988876 5677777652 22211112211111 100 0000 000000000
Q ss_pred ccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 300 AAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 300 T~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
+.++=.-..+++|++++.+=. +..++. .++.|.-|..=+.....++.++....+.|.
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHR 201 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-ccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEe
Confidence 111100123789999988733 334443 467887776444445679999999999996
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.37 E-value=1.4 Score=42.16 Aligned_cols=171 Identities=14% Similarity=0.102 Sum_probs=90.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCC--cceeeeee--cC--CcceeeeeccC--CCCCC-C
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKG--LTWQMTKR--RG--DREVHKETEEK--PGWCS-N 293 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~--ish~iT~R--~~--~~~vHr~~~~~--~g~C~-~ 293 (415)
+..|||++.|+|..++..-++++++.+....-.+.-|.+..-.. ..+.-... .. ...++..-... ...+. .
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998887777787653321 11111110 00 00111100000 00000 0
Q ss_pred CCCCCcccEEEeccccccHHHHHHhhhhhcCCCcceeh-hhHhhhHhhcCCCCeEEEEeeeeeeeccc-CcCCCCCCCCC
Q 014961 294 PHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWG-LDFALRKCVEPAHEKIGVVDSQWIVHQTV-PSLGNQGESKD 371 (415)
Q Consensus 294 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWG-LDf~w~~c~~~~~~kIGVVDa~~VvH~gv-PtLg~~g~~~~ 371 (415)
+..+..+.++-..+=+++|++|..+=.+ ... ...|| =|.-+..-+.-...+|-++-...|.|... +.-+. +..
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~-~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~---~~~ 236 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEG-MDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPY---TFP 236 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-CCc-ccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCC---CCC
Confidence 1111122233223447999999887443 333 34565 45544433322457898999889999655 33221 111
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014961 372 GKAPWQGVRERCKKEWTMFQGRMANAEKAYFQA 404 (415)
Q Consensus 372 ~~~~~~~VR~r~~~E~~~F~~R~~~A~k~~~~~ 404 (415)
.+ .. +.......|.++|-+..+.++-.
T Consensus 237 ~~--~~----~~~~n~~r~~~~w~~~~~~~~~~ 263 (299)
T cd02510 237 GG--SG----TVLRNYKRVAEVWMDEYKEYFYK 263 (299)
T ss_pred Cc--cc----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 00 22234455777776666665543
No 5
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.35 E-value=0.098 Score=43.35 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=61.7
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccE
Q 014961 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 302 (415)
Q Consensus 224 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 302 (415)
.+|||++.|+|...+...+.++.+.+.+. +..+..+. +
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~---------------------- 112 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------V---------------------- 112 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------C----------------------
Confidence 79999999999999888888887754433 33333222 0
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 303 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 303 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
=..+.+|++++|+.+-.+ . +....+|-|..+...+.....+|..+....+.|.
T Consensus 113 -~~~~~~~~~~~~~~~~~~-~-~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 113 -SGAFLLVRREVFEEVGGF-D-EDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -ceeeEeeeHHHHHHcCCC-C-hhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 012347899999876332 2 2222477788777655545679999999999995
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.34 E-value=0.16 Score=45.49 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=64.1
Q ss_pred CccEEEEecCccccCCCCHHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCcceeeeeccCCCCCCCCCCCC
Q 014961 224 SYDYIFIWDEDLGVEHFNAEEYI---KLVR-KHGLEISQPGLEPNKG-LTWQMTKRRGDREVHKETEEKPGWCSNPHLPP 298 (415)
Q Consensus 224 ~YDYIflwDDDL~vd~f~i~ryf---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~C~~~~~pp 298 (415)
.||||++.|+|..++...+.+++ +..+ ...+.+..|....... ..... .+.....+. ... +. ..+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~---~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLR--IQK----EG---EEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCccce--ecc----cc---cCC
Confidence 68999999999999988888885 2222 2244455554432211 11100 011110000 000 00 000
Q ss_pred cccEEEec--cccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 299 CAAFVEIM--APVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 299 cT~FVEiM--APVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
+...-.++ .-+|+|++++.+=.+ ..+. ...|-|+.|..-+.....++..+....|.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 11111111 126899999887544 2232 2345677766555445678999888888884
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.60 E-value=0.53 Score=42.06 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=91.0
Q ss_pred eEEEEEeccccccchHHHHhccC----CCcEEEEEEECCCCCcccc-c-----ccCCcceEEEEec---c--cccccccc
Q 014961 151 YLVTFTVGYDQKNNINAAIKKFS----DNFTIVLFHYDGRTTEWNE-F-----EWSKRAIHVSVRK---Q--TKWWYAKR 215 (415)
Q Consensus 151 yLva~~VG~kqk~~Vd~~v~kf~----~nFdv~LfhYDG~v~~W~d-~-----~Ws~~aihv~~~k---q--tKWw~akR 215 (415)
..|.+++=.. ...+...++-.. .++.|++.- |+..++=.+ + .+...-++|.... + +|-..+..
T Consensus 3 v~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 3444554332 234555555442 568888776 344332111 1 2333234543322 2 34444444
Q ss_pred ccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCC
Q 014961 216 FLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPH 295 (415)
Q Consensus 216 FLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~ 295 (415)
.+. ...+|||++.|+|..++...+.++++.+...+..+.|+....... ...++.-......+.......+. ..
T Consensus 81 ~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~- 153 (228)
T PF13641_consen 81 ALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSGR--RA- 153 (228)
T ss_dssp HHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT---B--
T ss_pred HHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhhh--cc-
Confidence 442 145999999999999999999999999977888888876644321 11122111111000000000000 00
Q ss_pred CCCcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 296 LPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 296 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
. . ..++=.-+=+|+|++++.+-.+ +. ..-|=|+.+..-+.....++..+....|.|.
T Consensus 154 ~-~-~~~~~G~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 154 L-G-VAFLSGSGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp -----S-B--TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred c-c-eeeccCcEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence 0 0 0111112337999999888654 12 3455888887655556789999998889995
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.76 E-value=0.31 Score=43.34 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=56.8
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccE
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 302 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 302 (415)
+.+|||++.|.|..++...+.++++.....+..+.++. | ++|
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence 57999999999998887777777665432222222211 0 011
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeee
Q 014961 303 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVH 357 (415)
Q Consensus 303 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH 357 (415)
.+-+|+|++|+.+=.+- ....-++=|+.+..-+.....++..++.. ++|
T Consensus 127 ---~~~~~r~~~~~~~ggf~--~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~ 175 (196)
T cd02520 127 ---KSMALRREVLDAIGGFE--AFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQ 175 (196)
T ss_pred ---ceeeeEHHHHHhccChH--HHhHHHHHHHHHHHHHHHcCCeEEEcchh-eec
Confidence 23478999998774431 11123467888887766667899888775 555
No 9
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.27 E-value=0.28 Score=42.83 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=64.2
Q ss_pred ccCccEEEEecCccccCCCCHHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCcceeee-eccCCCCCCCCCCC
Q 014961 222 VASYDYIFIWDEDLGVEHFNAEEYIKLVRKH-GLEISQPGLEPNK--GLTWQMTKRRGDREVHKE-TEEKPGWCSNPHLP 297 (415)
Q Consensus 222 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~-~~~~~g~C~~~~~p 297 (415)
.+.+|||++.|+|..++.-.++++++.++++ +..+..+....-. ...+.... .+.. .+. .......|
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------ 148 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS------ 148 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC------
Confidence 3579999999999999888888888887654 5666555432211 11111000 0000 000 00000111
Q ss_pred CcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeee
Q 014961 298 PCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIV 356 (415)
Q Consensus 298 pcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~Vv 356 (415)
.+..++=+|+|+++..+-.+- .. -++-|+.+...+.....++..++...+.
T Consensus 149 ----~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 149 ----PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred ----CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHhh
Confidence 111122378999998876653 22 4677887775544345677776554443
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.97 E-value=0.79 Score=40.94 Aligned_cols=127 Identities=11% Similarity=0.032 Sum_probs=66.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCcceeeeeccCCCCCCCCCCCCccc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNK-GLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAA 301 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 301 (415)
+.+|||++.|+|..++...++++++..++.+..+.+....... ........+........ .....+.... .. .
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~--~ 153 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAV-KI--G 153 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccc-cc--c
Confidence 3799999999999999888999998888777776655432211 10000000000000000 0000000000 00 0
Q ss_pred EEEec-cccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 302 FVEIM-APVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 302 FVEiM-APVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
++-.+ +=+|+|++|+.+=.+ ... ...|-|+.+..-+.....++..+....+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~-~~~--~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 154 YVDTVHHGAYRREVFEKVGGF-DES--LVRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccccccceEEHHHHHHhCCC-Ccc--cCccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 00001 116899999876332 222 2346787666333335678999999988885
No 11
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=88.64 E-value=1.4 Score=40.84 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=93.1
Q ss_pred CCceEEEEEeccccccchHHHHhcc----C--CCcEEEEEEECCCCCcccccccCC--------cceEEEEe--cccccc
Q 014961 148 QPKYLVTFTVGYDQKNNINAAIKKF----S--DNFTIVLFHYDGRTTEWNEFEWSK--------RAIHVSVR--KQTKWW 211 (415)
Q Consensus 148 ~~kyLva~~VG~kqk~~Vd~~v~kf----~--~nFdv~LfhYDG~v~~W~d~~Ws~--------~aihv~~~--kqtKWw 211 (415)
.++.-|.+++ ++....+..+++.. . .+|.|+++ =||+.|+ ..++-. ..+++... +.+|=.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivv-DdgS~D~--t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~ 83 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVV-DDGSPDG--TQDVVKQLQKVYGEDRILLRPRPGKLGLGT 83 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEE-eCCCCCC--HHHHHHHHHHhcCCCcEEEEecCCCCCHHH
Confidence 4567778887 55555555443322 1 36766654 4677653 222211 12333322 223211
Q ss_pred ccccccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC-CCc-ceeeeeecCCcceeeeeccCCC
Q 014961 212 YAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN-KGL-TWQMTKRRGDREVHKETEEKPG 289 (415)
Q Consensus 212 ~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~-S~i-sh~iT~R~~~~~vHr~~~~~~g 289 (415)
-.+.-+ -.+..|||++.|.|...+...++++++.+++.+.++.....-.. ... .|....+.......... .
T Consensus 84 a~n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~----~ 156 (243)
T PLN02726 84 AYIHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLA----Q 156 (243)
T ss_pred HHHHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHH----H
Confidence 111111 13578999999999999888888999888777766654432111 111 11111110000000000 0
Q ss_pred CCCCCCCCCcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 290 WCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 290 ~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
.+.......++ ..+-+|+|++++.+-.+... .||..|+-+..-+.....++.-|.-.++.|.
T Consensus 157 ~~~~~~~~d~~----g~~~~~rr~~~~~i~~~~~~---~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 157 TLLWPGVSDLT----GSFRLYKRSALEDLVSSVVS---KGYVFQMEIIVRASRKGYRIEEVPITFVDRV 218 (243)
T ss_pred HHhCCCCCcCC----CcccceeHHHHHHHHhhccC---CCcEEehHHHHHHHHcCCcEEEeCcEEeCCC
Confidence 00000000011 12337999999988655432 2443343333222223467887777777763
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.40 E-value=1.1 Score=38.24 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=27.1
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHH-HHhCCcccCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLV-RKHGLEISQP 259 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQP 259 (415)
+..|||++.|+|..++.-.+.++++.. +..+..+...
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999988888888444 3334544433
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=83.77 E-value=5.5 Score=38.74 Aligned_cols=137 Identities=18% Similarity=0.064 Sum_probs=85.4
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCc----ceeeeeccCCCCCCCCCCCCcc
Q 014961 225 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDR----EVHKETEEKPGWCSNPHLPPCA 300 (415)
Q Consensus 225 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~----~vHr~~~~~~g~C~~~~~ppcT 300 (415)
|+|++++++|..++...++++++.+++.+-...-+++-.+..-...+..+.... ..++..............+.|.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 559999999999999999999999999988777777665532222222221100 0000000000011111123344
Q ss_pred cEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccCcC
Q 014961 301 AFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSL 363 (415)
Q Consensus 301 ~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvPtL 363 (415)
.++..-+-+++|++++.+=.+ ..+. =.+.-|.-|+.=+.....++..+=.-.|.|..--+-
T Consensus 165 ~~~~G~~~li~~~~~~~vG~~-de~~-F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 165 ASLSGACLLIRREAFEKVGGF-DERF-FIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhcceeeeEEcHHHHHHhCCC-Cccc-ceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 456676789999999988663 3344 467777777766655566999999999999654443
No 14
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=83.22 E-value=0.68 Score=41.21 Aligned_cols=125 Identities=10% Similarity=-0.094 Sum_probs=71.4
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CcceeeeeccCCCCCCCCCCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK-HGLEISQPGLEPN-KGLTWQMTKRRG---DREVHKETEEKPGWCSNPHLP 297 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vHr~~~~~~g~C~~~~~p 297 (415)
+.+|||++.|+|..++.-.+.++++.+.+ .++.+.++..... ......+..... ....+. ....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGV-IQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHH-HHHHHhh------c
Confidence 47999999999999999999999999887 6777776643211 000000000000 000000 0000000 0
Q ss_pred CcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecc
Q 014961 298 PCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQT 359 (415)
Q Consensus 298 pcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~g 359 (415)
++ .++=.+.=+|+|++++.+-.+- . ...+-|+.+..-+.....+|..++...+.|..
T Consensus 156 ~~-~~~~g~~~~~r~~~~~~ig~~~-~---~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 GA-AFCCGSGAVVRREALDEIGGFP-T---DSVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred CC-ceecCceeeEeHHHHHHhCCCC-c---cceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 11 1222234489999999886552 2 24578888774444345688888887777753
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=80.56 E-value=1.1 Score=40.62 Aligned_cols=130 Identities=14% Similarity=0.016 Sum_probs=68.9
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC-CCcceeeee-ecCCcceeeeeccCCCCCCCCCCCCcc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN-KGLTWQMTK-RRGDREVHKETEEKPGWCSNPHLPPCA 300 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~-S~ish~iT~-R~~~~~vHr~~~~~~g~C~~~~~ppcT 300 (415)
+.+|||++.|.|..++...++++..+....+..+.|+-+... ..-++ ++. +.-....|-... ..+. ....+.
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----~~~~~~ 159 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFTIE-QVAR----SSTGLF 159 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhhHh-HhhH----hhcCCe
Confidence 489999999999999988888877776555555555543211 00000 000 000000000000 0000 000011
Q ss_pred cEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccCc
Q 014961 301 AFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPS 362 (415)
Q Consensus 301 ~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvPt 362 (415)
..+=.++-+|+|++|+.+-.+- .+ ..+=|+.+...+.....++..++...|.|..-++
T Consensus 160 ~~~~g~~~~~rr~~~~~vgg~~-~~---~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~ 217 (232)
T cd06437 160 FNFNGTAGVWRKECIEDAGGWN-HD---TLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPAS 217 (232)
T ss_pred EEeccchhhhhHHHHHHhCCCC-CC---cchhhHHHHHHHHHCCCeEEEeccceeeeeCCcC
Confidence 1111122379999998875542 22 2467877775554456799999888888853333
No 16
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.44 E-value=1 Score=39.94 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCccc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEIS 257 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 257 (415)
+..|||++.|+|..++.-.+.++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 45699999999988776667777776555555443
No 17
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=75.37 E-value=11 Score=33.20 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=68.7
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCccee-----eeeccCCCCCCCCCCCCccc
Q 014961 227 YIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVH-----KETEEKPGWCSNPHLPPCAA 301 (415)
Q Consensus 227 YIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vH-----r~~~~~~g~C~~~~~ppcT~ 301 (415)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-+...... +......|.| .
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRP--------L- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCC--------c-
Confidence 789999999999988898888888558899998887642 111122222111100 0011112221 1
Q ss_pred EEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccCc
Q 014961 302 FVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPS 362 (415)
Q Consensus 302 FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvPt 362 (415)
++=.-.=++++++++.+=.+ . + .--.|=|..+..-+.....+++.++...+.| ..|.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~-~-~-~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~-~~p~ 127 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGF-D-D-PFSIGEDMDLGFRLRRAGYRIVYVPDAIVYT-EAPP 127 (193)
T ss_pred cccCcceeeeHHHHHHhCcc-c-c-cccccchHHHHHHHHHCCCEEEEecccceee-eCCC
Confidence 11122347999999876221 1 0 1133456666643333458999999885544 4444
No 18
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.79 E-value=2.1 Score=37.33 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=32.1
Q ss_pred cccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeec
Q 014961 309 VFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQ 358 (415)
Q Consensus 309 VFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~ 358 (415)
+|+|++++.+-.+.. . ..|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~~-~--~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFPD-A--DVIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhccccc-c--ccccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 799999988765532 2 167778776665543 458888888777664
No 19
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=72.92 E-value=1.8 Score=38.67 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=25.4
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCccc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEIS 257 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 257 (415)
+..|||++.|.|...+.-.+.++++.+...+..+.
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v 115 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIA 115 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEE
Confidence 45699999999988877777777776544444443
No 20
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=69.96 E-value=5 Score=38.75 Aligned_cols=94 Identities=15% Similarity=0.242 Sum_probs=52.7
Q ss_pred EEEEecccccc-----chHHHH---hcc--CCCcEEEEEEECCCCCcccc-c-ccCC--cce-EEEEecccccccccccc
Q 014961 153 VTFTVGYDQKN-----NINAAI---KKF--SDNFTIVLFHYDGRTTEWNE-F-EWSK--RAI-HVSVRKQTKWWYAKRFL 217 (415)
Q Consensus 153 va~~VG~kqk~-----~Vd~~v---~kf--~~nFdv~LfhYDG~v~~W~d-~-~Ws~--~ai-hv~~~kqtKWw~akRFL 217 (415)
+.+||..+... .+..++ +++ +.++.|++..+ |+.++|.+ + +..+ ..+ .|....+.+.|..-+-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~-~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDD-GSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEEC-CCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 56778777642 333333 333 36889988888 44444411 1 1112 233 22222222233332221
Q ss_pred C-cccccCccEEEEecCccccCCCCHHHHHH
Q 014961 218 H-PDIVASYDYIFIWDEDLGVEHFNAEEYIK 247 (415)
Q Consensus 218 H-Pdiv~~YDYIflwDDDL~vd~f~i~ryf~ 247 (415)
+ ---.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 22236899999999999999888888888
No 21
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=69.55 E-value=4.8 Score=36.17 Aligned_cols=128 Identities=13% Similarity=-0.053 Sum_probs=63.2
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccE
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 302 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 302 (415)
+.+|||++.|+|..++...+.+.+..+.+....+.-+.......-...-..+ ....+..... .......++ ||+
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-~~~-- 156 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTR-WINTLTREQL--LTQVYTSHG-PTV-- 156 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHH-HHHhcCHHHH--HHHHHhhcC-Ccc--
Confidence 5799999999999999888888877776544322222111000000000000 0000000000 000000111 111
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecc
Q 014961 303 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQT 359 (415)
Q Consensus 303 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~g 359 (415)
-+-.-+++|++|+.+=.+- +..-+++=|+.+.+.+.....+|.-+|...+.++.
T Consensus 157 -~~~~~~~rr~~~~~~g~f~--~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 157 -IMPTWFCSREWFSHVGPFD--EGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -ccccceeehhHHhhcCCcc--chhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 0111257999998775542 22235667877765433345789999887766653
No 22
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=67.17 E-value=1.9 Score=41.77 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred eEEEEEeccccccchHHHHhccCCCcEEEEE-EECCCCCcccccccCCc-ceEEEEeccc-----cccccc-ccc-Cccc
Q 014961 151 YLVTFTVGYDQKNNINAAIKKFSDNFTIVLF-HYDGRTTEWNEFEWSKR-AIHVSVRKQT-----KWWYAK-RFL-HPDI 221 (415)
Q Consensus 151 yLva~~VG~kqk~~Vd~~v~kf~~nFdv~Lf-hYDG~v~~W~d~~Ws~~-aihv~~~kqt-----KWw~ak-RFL-HPdi 221 (415)
+..++|....-+..+..+.+-|....+-.+| .-|..-.+ + ... .+|+...+.. |+...+ .+. +-.+
T Consensus 9 ~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~---l--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~ 83 (252)
T PF02434_consen 9 FIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPS---L--PTVTGVHLVNPNCDAGHCRKTLSCKMAYEYDHFL 83 (252)
T ss_dssp EEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HH---H--HHHHGGGEEE-------------HHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccc---c--ccccccccccCCCcchhhHHHHHHHHHHHHHhhh
Confidence 4455566555677888888877644433344 33432111 1 111 2233332211 111122 111 1223
Q ss_pred ccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccc
Q 014961 222 VASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAA 301 (415)
Q Consensus 222 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 301 (415)
...+||+++.|||..| +++++.++...|+- +||-.=...+..++++. .|+-.. ......+-.
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~------~~~~~~-------~~~~~~~~~ 145 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEI------IHRFNP-------NKSKDSGFW 145 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCcccee------eccccc-------cccCcCceE
Confidence 4578999999999987 67777777765542 33322111111112111 000000 000111234
Q ss_pred EEEecc-ccccHHHHHHh--hh----hhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccCcCCC
Q 014961 302 FVEIMA-PVFSRDAWRCV--WH----MIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVPSLGN 365 (415)
Q Consensus 302 FVEiMA-PVFSR~Awrcv--w~----miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvPtLg~ 365 (415)
|.-..| -|+||.+.+.+ |. +.+.+..-.+.=|..+++|++.- -+|=.+++ .-.|.-+|.|..
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~-lgv~lt~s-~~fhs~~~~l~~ 214 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENL-LGVPLTHS-PLFHSHLENLQD 214 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHT-T---EEE--TT---SSS-GGG
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhc-CCcceeec-hhhcccCccccc
Confidence 555555 38999999877 22 22223333567899999999831 34444554 556777888753
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=65.41 E-value=5.1 Score=32.61 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=29.8
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 260 (415)
+..|||++.|||..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999999999999999999776554433
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=64.86 E-value=3.2 Score=37.80 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=31.4
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 262 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 262 (415)
+..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3469999999999999877888888886666666665554
No 25
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=64.05 E-value=3.9 Score=36.61 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=43.5
Q ss_pred ceEEEEeccccccccccccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccC
Q 014961 199 AIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEP 263 (415)
Q Consensus 199 aihv~~~kqtKWw~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 263 (415)
..++...+++|-.....-+ -.+.+|||++.|+|..++...++++++.+...+..+.++....
T Consensus 55 ~~v~~~~~~g~~~a~n~g~---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 55 IFVITVPHPGKRRALAEGI---RHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred EEEEecCCCChHHHHHHHH---HHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 3444444555543332211 1248999999999999999999999998887788888876644
No 26
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.94 E-value=5.1 Score=32.56 Aligned_cols=17 Identities=47% Similarity=0.911 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhheee
Q 014961 32 LIVTTFVGVVFGFFIGV 48 (415)
Q Consensus 32 ~~~~~~~~~~~gf~~g~ 48 (415)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888899999999863
No 27
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=60.94 E-value=7 Score=39.16 Aligned_cols=186 Identities=13% Similarity=0.207 Sum_probs=93.7
Q ss_pred ceEEEEEeccccccchHHHHhcc------------CCCcEEEEEEECCCCCcccc--cccCCc------ceEEEE--ecc
Q 014961 150 KYLVTFTVGYDQKNNINAAIKKF------------SDNFTIVLFHYDGRTTEWNE--FEWSKR------AIHVSV--RKQ 207 (415)
Q Consensus 150 kyLva~~VG~kqk~~Vd~~v~kf------------~~nFdv~LfhYDG~v~~W~d--~~Ws~~------aihv~~--~kq 207 (415)
+.-|.+++ ++...++..+++.. ..++.|+ +.-||+.|+=.+ -++.++ .+++.. +++
T Consensus 71 ~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EII-VVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~ 148 (333)
T PTZ00260 71 DLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEII-IVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNK 148 (333)
T ss_pred EEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEE-EEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCC
Confidence 44555554 44445555554422 1256655 557888764111 111111 245443 455
Q ss_pred ccccccccccCcccccCccEEEEecCccccCCCCHHHHHHHHHH---hCCcccCCCccC--CC-Cc-ceeeeeecCCcce
Q 014961 208 TKWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRK---HGLEISQPGLEP--NK-GL-TWQMTKRRGDREV 280 (415)
Q Consensus 208 tKWw~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~---~gLeISQPALd~--~S-~i-sh~iT~R~~~~~v 280 (415)
+|-.-.+.=+. .+..|||++.|.|...+..++.++++.+++ .+.++..-.-.. ++ .. ..+..++--...+
T Consensus 149 G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~ 225 (333)
T PTZ00260 149 GKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGF 225 (333)
T ss_pred ChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHH
Confidence 66544433221 257899999999999999999999998875 444443332211 11 00 0011000001111
Q ss_pred eeeeccCCCCCCCCCCCCcccEEEeccc--cccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeee
Q 014961 281 HKETEEKPGWCSNPHLPPCAAFVEIMAP--VFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQ 353 (415)
Q Consensus 281 Hr~~~~~~g~C~~~~~ppcT~FVEiMAP--VFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~ 353 (415)
|.-..- .| + +++-+.++. +|+|++++-+.+.+ ...+|+.|.-+...+...+.+|.-|--.
T Consensus 226 ~~l~~~---~~-~------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 226 HFIVNT---IC-G------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHHHH---Hc-C------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHHcCCCEEEEcee
Confidence 110000 01 0 123333433 89999998775432 2358888887777776444455544433
No 28
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=57.40 E-value=28 Score=29.74 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=20.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHH
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKL 248 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~I 248 (415)
+.+|||+++|+|..++...+.++++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 57999999999998876555655554
No 29
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.48 E-value=26 Score=30.90 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.7
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCcc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLE 262 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 262 (415)
+.+|||++.|+|..++...+++++......+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999999888888877666666655555443
No 30
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=56.27 E-value=6.5 Score=35.42 Aligned_cols=123 Identities=12% Similarity=-0.075 Sum_probs=64.7
Q ss_pred CccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccEE
Q 014961 224 SYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAFV 303 (415)
Q Consensus 224 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FV 303 (415)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-...+.... ...... .......+. +...+ .++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~-~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYKG-FFDIGMVSR--NERNA-IIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHHH-HHHHHhccc--cccCc-eEE
Confidence 4999999999999999888988888876677776653321111000110000 000000 000000000 00111 122
Q ss_pred EeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeee
Q 014961 304 EIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWI 355 (415)
Q Consensus 304 EiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~V 355 (415)
-..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347999999987443 2222 24577777655555678888876444
No 31
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=53.52 E-value=6 Score=36.15 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=71.1
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK--HGLEISQPGLEPNKGL-TWQMTKRRGDREVHKETEEKPGWCSNPHLPPC 299 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 299 (415)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..++ +.- ..-....|-.... ...=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l---~~~~~~~~~~~~~---------a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRL---EAAFFNFLPGVLQ---------ALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHH---HHHHHhHHHHHHH---------HhcC
Confidence 89999999999999988777777765543 3332222222222211 000 0000001100000 0012
Q ss_pred ccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeeecccC
Q 014961 300 AAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQTVP 361 (415)
Q Consensus 300 T~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH~gvP 361 (415)
+.|+=.|+=.|+|++++..=. + +.+.+...=||.++..+.....+|...... |.|..+|
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG-~-~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGG-F-EALADYLADDYALGRRLRARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred CCceecceeeeEHHHHHHccc-H-HHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeecccC
Confidence 567778888999999987622 1 244456678999999888777788776643 4453333
No 32
>PRK01844 hypothetical protein; Provisional
Probab=50.08 E-value=9.8 Score=31.64 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhee
Q 014961 33 IVTTFVGVVFGFFIG 47 (415)
Q Consensus 33 ~~~~~~~~~~gf~~g 47 (415)
|++.++|++.|||++
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667778888888875
No 33
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=49.03 E-value=51 Score=30.01 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=87.9
Q ss_pred cccccCCCCCCCCCCCceEEEEEecccc--ccchHHHHhccC-CCcEEEEEEECCCCCcccccccCCcceEEEEeccccc
Q 014961 134 LRRLWGNPNEDLTSQPKYLVTFTVGYDQ--KNNINAAIKKFS-DNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKW 210 (415)
Q Consensus 134 l~rLwg~p~~d~~~~~kyLva~~VG~kq--k~~Vd~~v~kf~-~nFdv~LfhYDG~v~~W~d~~Ws~~aihv~~~kqtKW 210 (415)
+|.-||++..-. ..+.-+.+-+|... ...++..+++=. ..=||+++-+ .|.+..+. -+.+ -.-+|
T Consensus 6 IR~TW~~~~~~~--~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~-----~~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNFK--GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTL-----AGLKW 73 (195)
T ss_pred HHHHHhcccccC--CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHH-----HHHHH
Confidence 467799765422 24667777778876 445666555423 2347777655 33333321 0011 11122
Q ss_pred cccccccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcc--eeeeeccCC
Q 014961 211 WYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDRE--VHKETEEKP 288 (415)
Q Consensus 211 w~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~--vHr~~~~~~ 288 (415)
-. + ...+++||+..|||+-| ++.++++..++.-.+...+.+.. ......-..|.+..+ +....+
T Consensus 74 ~~-~------~c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g-~~~~~~~~~r~~~~kw~v~~~~y--- 139 (195)
T PF01762_consen 74 AS-K------HCPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG-GCIKNGPPIRDPSSKWYVSEEEY--- 139 (195)
T ss_pred HH-h------hCCchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc-ccccCCccccccccCceeeeeec---
Confidence 21 1 12359999999999988 55666666665522222222211 111111122222221 111000
Q ss_pred CCCCCCCCCCcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcC
Q 014961 289 GWCSNPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEP 342 (415)
Q Consensus 289 g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~ 342 (415)
+....||+ ....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 140 ---~~~~yP~y---~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 ---PDDYYPPY---CSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---ccccCCCc---CCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 01234443 346777899999988876543 222233334445888763
No 34
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=45.59 E-value=84 Score=31.32 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=74.0
Q ss_pred cCccEEEEecCccc-cCCCCHHHHHHHHH-HhCCcccCCCccCCCCc--------ceeeeeecCCcceeeeeccCCCCCC
Q 014961 223 ASYDYIFIWDEDLG-VEHFNAEEYIKLVR-KHGLEISQPGLEPNKGL--------TWQMTKRRGDREVHKETEEKPGWCS 292 (415)
Q Consensus 223 ~~YDYIflwDDDL~-vd~f~i~ryf~Ivr-~~gLeISQPALd~~S~i--------sh~iT~R~~~~~vHr~~~~~~g~C~ 292 (415)
+..|||.+.|.|.. .+...+.++++-+. ..+.++........... ...++..-....++. . .+..+
T Consensus 114 a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~-~--~~~l~- 189 (306)
T PRK13915 114 TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNL-L--RPELA- 189 (306)
T ss_pred cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHH-H--HHhhh-
Confidence 56899999999996 78888888888765 34566554322111000 000000000000000 0 00000
Q ss_pred CCCCCCcccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhh-Hhhc-CCCCeEEEEeeeeeeecccCcCCCCCCCC
Q 014961 293 NPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALR-KCVE-PAHEKIGVVDSQWIVHQTVPSLGNQGESK 370 (415)
Q Consensus 293 ~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~-~c~~-~~~~kIGVVDa~~VvH~gvPtLg~~g~~~ 370 (415)
.-.-|.+||. +|+|++++.+- ...|||+|.... .++. ....+|+-||-....|.. |
T Consensus 190 -~i~dp~sG~~-----a~rr~~l~~l~------~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~------~---- 247 (306)
T PRK13915 190 -GFVQPLGGEY-----AGRRELLESLP------FVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRN------Q---- 247 (306)
T ss_pred -cccCcchHhH-----HHHHHHHHhCC------CCCCCeehHHHHHHHHHHhCcCceEEEEecccccCC------C----
Confidence 0012334432 68999988652 236899885433 3332 222388889977777742 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHH
Q 014961 371 DGKAPWQGVRERCKKEWTMFQGRMA 395 (415)
Q Consensus 371 ~~~~~~~~VR~r~~~E~~~F~~R~~ 395 (415)
+...+.+-..+=+..|.+|+.
T Consensus 248 ----~~~~~~~m~~~i~~~~~~~~~ 268 (306)
T PRK13915 248 ----PLRALGRMARQIIATALSRLG 268 (306)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHh
Confidence 123444445666677777774
No 35
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=42.67 E-value=21 Score=28.04 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.2
Q ss_pred CccEEEEecCccccCCCCHHHH
Q 014961 224 SYDYIFIWDEDLGVEHFNAEEY 245 (415)
Q Consensus 224 ~YDYIflwDDDL~vd~f~i~ry 245 (415)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 36
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=42.47 E-value=16 Score=29.54 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=26.3
Q ss_pred CccEEEEecCccccCCCCHHHH-HHHHHHhCCcccCCCc
Q 014961 224 SYDYIFIWDEDLGVEHFNAEEY-IKLVRKHGLEISQPGL 261 (415)
Q Consensus 224 ~YDYIflwDDDL~vd~f~i~ry-f~Ivr~~gLeISQPAL 261 (415)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998887767777 3334444444444444
No 37
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=42.30 E-value=40 Score=32.00 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=22.6
Q ss_pred cCccEEEEecCccccCCCC-HHHHHHHH-HHhC
Q 014961 223 ASYDYIFIWDEDLGVEHFN-AEEYIKLV-RKHG 253 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~-i~ryf~Iv-r~~g 253 (415)
+.++|+++..||+.+.+.+ +.+.+++. +...
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 7899999999999998766 78888888 3334
No 38
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.71 E-value=14 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=20.3
Q ss_pred CCCchhhH---HHHHHHH--HHHhhhheeecccc
Q 014961 24 RKTNESMR---LIVTTFV--GVVFGFFIGVSFPT 52 (415)
Q Consensus 24 ~~~~~~m~---~~~~~~~--~~~~gf~~g~s~p~ 52 (415)
-||+.+.+ +|+.+++ -+++|+|+|++|=+
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777 4444444 46789999999865
No 39
>PRK11677 hypothetical protein; Provisional
Probab=40.98 E-value=16 Score=33.33 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhheeeccc
Q 014961 32 LIVTTFVGVVFGFFIGVSFP 51 (415)
Q Consensus 32 ~~~~~~~~~~~gf~~g~s~p 51 (415)
.++..++|+++|||+|-..+
T Consensus 6 a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 35566677777777775433
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.76 E-value=16 Score=32.39 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhheeeccc
Q 014961 32 LIVTTFVGVVFGFFIGVSFP 51 (415)
Q Consensus 32 ~~~~~~~~~~~gf~~g~s~p 51 (415)
.|+..++|+++||+++-.+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 36778888888888875443
No 41
>PRK00523 hypothetical protein; Provisional
Probab=39.69 E-value=18 Score=30.15 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhee
Q 014961 33 IVTTFVGVVFGFFIG 47 (415)
Q Consensus 33 ~~~~~~~~~~gf~~g 47 (415)
|+..++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777888888875
No 42
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=39.33 E-value=36 Score=33.17 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=52.8
Q ss_pred ccccccchHHHHhccC--CCcE-EEEEEECCCCCcccccccCCcceEEEEeccccccccccccCcccccCccEEEEecCc
Q 014961 158 GYDQKNNINAAIKKFS--DNFT-IVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYIFIWDED 234 (415)
Q Consensus 158 G~kqk~~Vd~~v~kf~--~nFd-v~LfhYDG~v~~W~d~~Ws~~aihv~~~kqtKWw~akRFLHPdiv~~YDYIflwDDD 234 (415)
.++....+.++|+... +.=. |+++.=+. .+--...+|....+-|....+.+=-.-.||+-.+ .-.=|+|+..|||
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~-~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~-~i~T~AVl~~DDD 85 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNP-NPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDP-EIETDAVLSLDDD 85 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-T-S--THHHHHT---S-EEEEEESSHHGGGGGS--T-T--SSEEEEEETT
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCC-CCCCcccccCCCCceEEEEecCCccHHhcCcCcc-ccCcceEEEecCC
Confidence 4444555666666553 3333 44444432 2222234566666777777777766778887433 3347999999999
Q ss_pred cccCCCCHHHHHHHHHHh
Q 014961 235 LGVEHFNAEEYIKLVRKH 252 (415)
Q Consensus 235 L~vd~f~i~ryf~Ivr~~ 252 (415)
+.++..+++.-|+.-+++
T Consensus 86 v~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 86 VMLSCDELEFAFQVWREF 103 (247)
T ss_dssp EEE-HHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhC
Confidence 999999998888887744
No 43
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.64 E-value=25 Score=30.62 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.3
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHH-HHhCCcccCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLV-RKHGLEISQP 259 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQP 259 (415)
+.+|||++.|+|..++.-.++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888888888887 4455555544
No 44
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.47 E-value=26 Score=30.81 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPG 260 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 260 (415)
+.+|||++.|+|..++.-.++++++...+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988788888886665554443333
No 45
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.09 E-value=41 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=29.5
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHh--CCcccCCC
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKH--GLEISQPG 260 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPA 260 (415)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999988888888877643 44444544
No 46
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.24 E-value=22 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhheeecc
Q 014961 33 IVTTFVGVVFGFFIGVSF 50 (415)
Q Consensus 33 ~~~~~~~~~~gf~~g~s~ 50 (415)
|+++++|+++||++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777777777554
No 47
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=30.90 E-value=47 Score=33.62 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=63.3
Q ss_pred ccEEEEecCccccCCCCHHHHHHHHHHhCCcccC--CCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCcccE
Q 014961 225 YDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQ--PGLEPNKGLTWQMTKRRGDREVHKETEEKPGWCSNPHLPPCAAF 302 (415)
Q Consensus 225 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ--PALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 302 (415)
+|||++.|.|..++...++++++.+++.+..+.. |.....+...+.+.. .-...... .+. ..+-.++. +-+.+
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~--~~~~~ 208 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIP-AFVFFFQK-LYP-FRWVNDPR--RRTAA 208 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHH-HHHHHHHH-hcc-hhhhcCCC--cccee
Confidence 9999999999999999999999998887766543 322222111110000 00000000 000 00000000 01222
Q ss_pred EEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeee
Q 014961 303 VEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIV 356 (415)
Q Consensus 303 VEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~Vv 356 (415)
+-..+=+++|++++.+=.+- +..+.-.=|..+.+.+.....++-.....-.+
T Consensus 209 ~~G~~~lirr~~~~~vGGf~--~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~ 260 (384)
T TIGR03469 209 AAGGCILIRREALERIGGIA--AIRGALIDDCTLAAAVKRSGGRIWLGLAARTR 260 (384)
T ss_pred ecceEEEEEHHHHHHcCCHH--HHhhCcccHHHHHHHHHHcCCcEEEEecCceE
Confidence 22334479999998873331 11122345788887776555667665544333
No 48
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=30.56 E-value=1.4e+02 Score=30.94 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred CceEEEEEeccccccchHHHHhcc---C-CCcEEEEEEECCCCCccccc--ccCC--cceEEEE--eccccccccccccC
Q 014961 149 PKYLVTFTVGYDQKNNINAAIKKF---S-DNFTIVLFHYDGRTTEWNEF--EWSK--RAIHVSV--RKQTKWWYAKRFLH 218 (415)
Q Consensus 149 ~kyLva~~VG~kqk~~Vd~~v~kf---~-~nFdv~LfhYDG~v~~W~d~--~Ws~--~aihv~~--~kqtKWw~akRFLH 218 (415)
|+.-|.+++=... ..+.+.++.. . ++|+|++. =||+.|+..+. ++.. ..+++.. .+++|=.-++.-+
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIivV-dDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVIAI-NDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEEEE-ECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 4566666665443 3454444433 1 47897754 58887754321 1111 1234433 4566643333322
Q ss_pred cccccCccEEEEecCccccCCCCHHHHHHHHH
Q 014961 219 PDIVASYDYIFIWDEDLGVEHFNAEEYIKLVR 250 (415)
Q Consensus 219 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr 250 (415)
..+.||||.+.|.|-.++...+.++.+-+.
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~ 181 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLI 181 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHH
Confidence 226799999999999998888888777554
No 49
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.90 E-value=31 Score=26.42 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=20.7
Q ss_pred CCCCchhhHHHHHHHHHHHhhhheeecc
Q 014961 23 NRKTNESMRLIVTTFVGVVFGFFIGVSF 50 (415)
Q Consensus 23 ~~~~~~~m~~~~~~~~~~~~gf~~g~s~ 50 (415)
.||-..+++.+..+.+| ++||+||+++
T Consensus 16 VRKg~~SL~HF~LT~~g-ll~~lv~la~ 42 (45)
T PF11688_consen 16 VRKGGTSLFHFGLTAVG-LLGFLVGLAY 42 (45)
T ss_pred HHccCcchhHHHHHHHH-HHHHHHHHHH
Confidence 47778888877766666 5799999875
No 50
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.30 E-value=32 Score=27.75 Aligned_cols=16 Identities=50% Similarity=0.901 Sum_probs=14.0
Q ss_pred cccccCccEEEEecCc
Q 014961 219 PDIVASYDYIFIWDED 234 (415)
Q Consensus 219 Pdiv~~YDYIflwDDD 234 (415)
..+..+|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 5778899999999985
No 51
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=25.84 E-value=1e+02 Score=28.29 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCCCcceecCCccccccccCCCCCCCCCCCceEEEEEecccccc----chH----------HHHhccC-------CCc
Q 014961 118 AERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKN----NIN----------AAIKKFS-------DNF 176 (415)
Q Consensus 118 ~e~lP~giv~~~sd~~l~rLwg~p~~d~~~~~kyLva~~VG~kqk~----~Vd----------~~v~kf~-------~nF 176 (415)
-++||+.-|.+-+|-...+|-- +.+..-++=|.+=+|.-++. .++ ..+++|. .-|
T Consensus 33 G~Rlp~~~v~r~aD~~p~~l~~----~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 33 GRRLPSAKVVRHADGNPVHLQD----DLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp TCB----EEEETTTTEEEEGGG----G--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred ccccCCceEEEEcCCCChhHhh----hcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 4789999999999988777732 33333455555545554432 233 2344663 249
Q ss_pred EEEEEEECCCCCcccccccCC
Q 014961 177 TIVLFHYDGRTTEWNEFEWSK 197 (415)
Q Consensus 177 dv~LfhYDG~v~~W~d~~Ws~ 197 (415)
|++|+|= ..++++||.+
T Consensus 109 ~~~~I~~----~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIHS----SPRDEVELFD 125 (169)
T ss_dssp EEEEEES----S-CCCS-GGG
T ss_pred EEEEEec----CCCCceeHHH
Confidence 9999884 4456777765
No 52
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.93 E-value=32 Score=38.21 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred cccCcccccCccEEEEecCccccCCCCHHHHHHH
Q 014961 215 RFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKL 248 (415)
Q Consensus 215 RFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~I 248 (415)
++||--+.+.|||++|--||..|++|-.-+++.-
T Consensus 88 ~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~h 121 (681)
T KOG3708|consen 88 GLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDH 121 (681)
T ss_pred HHHHHhhccccceEEEecCcceecHHHHHHHHhh
Confidence 3455568899999999999999998877776653
No 53
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=24.08 E-value=43 Score=28.34 Aligned_cols=44 Identities=34% Similarity=0.551 Sum_probs=34.4
Q ss_pred ccccCcccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCc
Q 014961 214 KRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGL 261 (415)
Q Consensus 214 kRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPAL 261 (415)
..|+||.+.++--.|||+-|++||.... ++-.++.|+.||.-+-
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGA 77 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCe
Confidence 4589999999999999999999997644 4455667777765443
No 54
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=24.03 E-value=1.6e+02 Score=33.37 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCceEEEEEecccccc----chHHHHhc-----cCCCcEEEEEEECCCCCccccc------ccCC-----cceEEEEecc
Q 014961 148 QPKYLVTFTVGYDQKN----NINAAIKK-----FSDNFTIVLFHYDGRTTEWNEF------EWSK-----RAIHVSVRKQ 207 (415)
Q Consensus 148 ~~kyLva~~VG~kqk~----~Vd~~v~k-----f~~nFdv~LfhYDG~v~~W~d~------~Ws~-----~aihv~~~kq 207 (415)
.++.-|.+|+=....+ .+.+..+. ..++|++.+.. ||+.++-... +..+ .-++|..+..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLd-D~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILS-DTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 4566777776554432 34444432 34689997765 7866541111 1111 1355544322
Q ss_pred c---cccccccccCcccccCccEEEEecCccccCCCCHHHHHHHHH-HhCCcccC
Q 014961 208 T---KWWYAKRFLHPDIVASYDYIFIWDEDLGVEHFNAEEYIKLVR-KHGLEISQ 258 (415)
Q Consensus 208 t---KWw~akRFLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr-~~gLeISQ 258 (415)
. |=-++..|+. -.-..||||.+.|=|..++...+.+++..++ .-++-+-|
T Consensus 202 n~~~KaGNl~~~~~-~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 NVGRKAGNIADFCR-RWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred CCCccHHHHHHHHH-hcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 1 2222222331 1116899999999999999999999999886 44666666
No 55
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.51 E-value=68 Score=25.87 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhheeec
Q 014961 34 VTTFVGVVFGFFIGVS 49 (415)
Q Consensus 34 ~~~~~~~~~gf~~g~s 49 (415)
+...+|+++|+++|+.
T Consensus 60 lil~l~~~~Gl~lgi~ 75 (82)
T PF13807_consen 60 LILALGLFLGLILGIG 75 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555543
No 56
>PRK10073 putative glycosyl transferase; Provisional
Probab=21.70 E-value=83 Score=31.43 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=58.3
Q ss_pred CceEEEEEeccccccchHHHHhcc----CCCcEEEEEEECCCCCcccc--cccCC--cceEEEE-eccccccccccccCc
Q 014961 149 PKYLVTFTVGYDQKNNINAAIKKF----SDNFTIVLFHYDGRTTEWNE--FEWSK--RAIHVSV-RKQTKWWYAKRFLHP 219 (415)
Q Consensus 149 ~kyLva~~VG~kqk~~Vd~~v~kf----~~nFdv~LfhYDG~v~~W~d--~~Ws~--~aihv~~-~kqtKWw~akRFLHP 219 (415)
|+.-|.++|= +....+.+.++-. ..+|.|++. =||++|+=.+ -+|.+ ..++|.. .+++. ..-|- .-
T Consensus 6 p~vSVIIP~y-N~~~~L~~~l~Sl~~Qt~~~~EIIiV-dDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~--~~arN-~g 80 (328)
T PRK10073 6 PKLSIIIPLY-NAGKDFRAFMESLIAQTWTALEIIIV-NDGSTDNSVEIAKHYAENYPHVRLLHQANAGV--SVARN-TG 80 (328)
T ss_pred CeEEEEEecc-CCHHHHHHHHHHHHhCCCCCeEEEEE-eCCCCccHHHHHHHHHhhCCCEEEEECCCCCh--HHHHH-HH
Confidence 4566777773 3334444444432 257887755 4787753111 01211 1233322 22221 00111 01
Q ss_pred ccccCccEEEEecCccccCCCCHHHHHHHHHHhCCcccC
Q 014961 220 DIVASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQ 258 (415)
Q Consensus 220 div~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 258 (415)
=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 81 l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 81 LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 113577999999999888888888999988888777754
No 57
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.64 E-value=90 Score=27.30 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=24.6
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHH
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRK 251 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 251 (415)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888876653
No 58
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=20.60 E-value=68 Score=32.33 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=64.0
Q ss_pred cCccEEEEecCccccCCCCHHHHHHHHHHhCCcccCCCccCC--CCc-ceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 014961 223 ASYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPN--KGL-TWQMTKRRGDREVHKETEEKPGWCSNPHLPPC 299 (415)
Q Consensus 223 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~--S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 299 (415)
+.||||.+.|.|..++..-+.+..+-++..+..+.+-..... ..+ +. +....-...+. ++........++
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~-l~~~~~~~~~~------~~~~~~~~~~~~ 197 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSR-LGAMGINHNFL------PSVMVARALGRA 197 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHH-HHHHHhhhhhh------HHHHHHHhccCC
Confidence 689999999999999888888887777655555544322110 000 00 00000000000 000000000000
Q ss_pred ccEEEeccccccHHHHHHhhhhhcCCCcceehhhHhhhHhhcCCCCeEEEEeeeeeee
Q 014961 300 AAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVH 357 (415)
Q Consensus 300 T~FVEiMAPVFSR~Awrcvw~miqNDLvhGWGLDf~w~~c~~~~~~kIGVVDa~~VvH 357 (415)
.|+-...=+|+|++++.+=.+ ++..+..+=|+.+.+-+.....++.+.+.. +.|
T Consensus 198 -~~~~G~~~a~RR~~l~~iGGf--~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~-v~~ 251 (373)
T TIGR03472 198 -RFCFGATMALRRATLEAIGGL--AALAHHLADDYWLGELVRALGLRVVLAPVV-VDT 251 (373)
T ss_pred -ccccChhhheeHHHHHHcCCh--HHhcccchHHHHHHHHHHHcCCeEEecchh-hhc
Confidence 121112236899999877443 122234456888887776677888877654 555
No 59
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=20.52 E-value=1.4e+02 Score=28.13 Aligned_cols=87 Identities=21% Similarity=0.129 Sum_probs=49.9
Q ss_pred ceEEEEEeccccccchHHHHhcc-CCCcEEEEEEECCCCCcccccccCCcceEEEEeccccccccccccCcccccCccEE
Q 014961 150 KYLVTFTVGYDQKNNINAAIKKF-SDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSVRKQTKWWYAKRFLHPDIVASYDYI 228 (415)
Q Consensus 150 kyLva~~VG~kqk~~Vd~~v~kf-~~nFdv~LfhYDG~v~~W~d~~Ws~~aihv~~~kqtKWw~akRFLHPdiv~~YDYI 228 (415)
-.+..++-|++. .+.+++-+-. ..++.+-+..++ ..++..+++.. ..-+++ -..||+=|+++..||-|
T Consensus 31 ~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~--~~~~~~~~~~~-------~~~~~~-~y~RL~i~~llp~~~kv 99 (246)
T cd00505 31 LRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVD--ILDSVDSEHLK-------RPIKIV-TLTKLHLPNLVPDYDKI 99 (246)
T ss_pred eEEEEEEccccH-HHHHHHHHHHhccCceEEEEecc--ccCcchhhhhc-------Cccccc-eeHHHHHHHHhhccCeE
Confidence 345666666654 2333322211 246776666663 23444333320 111222 23555558998889999
Q ss_pred EEecCccccCCCCHHHHHHH
Q 014961 229 FIWDEDLGVEHFNAEEYIKL 248 (415)
Q Consensus 229 flwDDDL~vd~f~i~ryf~I 248 (415)
...|.|+.+- -+++.++++
T Consensus 100 lYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 100 LYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEcCCeeec-cCHHHHhhc
Confidence 9999999886 688888865
Done!