Your job contains 1 sequence.
>014962
MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF
KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC
GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA
YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF
TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS
CSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII
ASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014962
(415 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi... 1567 6.5e-161 1
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"... 137 1.8e-07 2
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 148 7.0e-07 2
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 135 1.4e-06 2
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 135 1.5e-06 2
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 137 1.7e-06 2
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 120 1.8e-06 2
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 135 2.8e-06 2
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 135 2.8e-06 2
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 135 2.8e-06 2
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 135 2.8e-06 2
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 143 7.9e-06 2
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 143 7.9e-06 2
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 145 8.4e-06 3
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 105 2.7e-05 2
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 124 7.9e-05 3
>TAIR|locus:2081576 [details] [associations]
symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
Uniprot:Q84R20
Length = 1379
Score = 1567 (556.7 bits), Expect = 6.5e-161, P = 6.5e-161
Identities = 303/420 (72%), Positives = 347/420 (82%)
Query: 1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60
MVH+KR N +KF LGGTP+KV+YHSES+LLIVMRT+L DTC+SDICCVDPLSGSVLSS+
Sbjct: 895 MVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLY-DTCTSDICCVDPLSGSVLSSY 953
Query: 61 KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120
KL+ GETGKSMELVRVG+E VLVVGTSLSSGPAI+PSGEAESTKGR+I+LC+EH QNSD
Sbjct: 954 KLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDS 1013
Query: 121 GSMTFCSKAGSSSQRTSPFREIVGYATEQXXXXXXXXXXXXXXXXGIKLEETETWQLRLA 180
GSMT CSKA SSSQRTSPF ++VGY TE GIKL+E ETWQLRLA
Sbjct: 1014 GSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLA 1073
Query: 181 YSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240
STTWPGMVLAICPYLD YFLASAGNAFYVCGFPND+P+R++RFAVGRTRFMI L +F
Sbjct: 1074 SSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYF 1133
Query: 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
TRI VGDCRDG+LFYSYHE+++KL QIYCDP+QRLVADC LMD ++ VSDRKGSIA+LS
Sbjct: 1134 TRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILS 1193
Query: 301 CSDRLE------DNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC-LA-SF 352
C D + + +SPE NL NCAY+MGEIA+SI+KG IYKLPADD L L+ S
Sbjct: 1194 CKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSI 1253
Query: 353 ESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412
+++ TIIA TLLGSI +F PISSEEYELLE VQA+L IHPLTAP+LGNDH+EFR RENP
Sbjct: 1254 DTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENP 1313
>UNIPROTKB|F1NZF7 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
Length = 504
Score = 137 (53.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 286 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVV-- 343
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 344 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 401
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 402 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 458
Score = 56 (24.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 65 FPLQYTPRKFVIHPESNNLIIIETDHN 91
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 148 (57.2 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 58/244 (23%), Positives = 102/244 (41%)
Query: 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIML 235
+L L T G+ +A+ P+ R LA G + + N + +R+ + I
Sbjct: 926 KLELISHTEIDGIPMALTPFQGR-MLAGVGRFLRI--YDLGNKKMLRKGELSAVPLFITH 982
Query: 236 LTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS 295
+T +RI V D + + F Y + L D R VL+D DT D+ G+
Sbjct: 983 ITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGN 1042
Query: 296 IAVLSCSD---RLEDNASPECNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
I +L C + +L D + E L + + + + F +P +L +
Sbjct: 1043 IWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPT--SLQK-VQL 1099
Query: 352 FESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRE 410
E ++ ++ + LLG++ +F P I+ E+ + Q + PL G DH +RS
Sbjct: 1100 VEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQ--QLEFLLRKECPPLAGRDHLAYRSYY 1157
Query: 411 NPVR 414
PV+
Sbjct: 1158 APVK 1161
Score = 48 (22.0 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 17 TPKKVLYHSESRLLIVMRTELNNDT 41
TP+K++ H +L ++++E N D+
Sbjct: 802 TPRKIVKHPNFPVLYILQSERNFDS 826
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 135 (52.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 684 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 741
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 742 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 799
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 800 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 856
Score = 56 (24.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 559 FPLQYTPRKFVIHPESNNLIIIETDHN 585
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 135 (52.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 702 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 759
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 760 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 817
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 818 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 874
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 482 FPLQYTPRKFVIHPESNNLIIIETDHN 508
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 137 (53.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 1010 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVV-- 1067
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 1068 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1125
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 1126 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1182
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHN 805
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 120 (47.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 45/180 (25%), Positives = 77/180 (42%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ VGD ++ I F Y L D + R + V++D DT +D+ G+I VL
Sbjct: 1038 RLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRL 1097
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTT--- 358
+ D + T + G + + K I A+ +GD + + +
Sbjct: 1098 PLLISDEVEEDPTGT-KLKFESGTLNGAPHKLDHI----ANFFVGDTVTTLNKTSLVVGG 1152
Query: 359 ---IIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
I+ +T+ G+I IP +S E+ + ++ + L PL G DH +RS PV+
Sbjct: 1153 PEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL--PLCGRDHLAYRSYYFPVK 1210
Score = 74 (31.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL 64
N L TPK+ + H ++ +I++ TE N +T + DI ++ S +L + EL
Sbjct: 813 NQETIKLNATPKRFIIHPQTSYIIILETETNYNTDNIDIDKINEQSEKLLLEKQKEL 869
Score = 51 (23.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH--EQVLVVG 85
S I +DP++ L S LE GE G S+ G E LVVG
Sbjct: 904 SYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVG 947
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHN 805
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHN 805
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHN 805
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I V+
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVV-- 1056
Query: 302 SDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQ 356
RL N + E + P N A + G + + +K I + + +
Sbjct: 1057 --RLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGS 1114
Query: 357 TTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVR 414
+++ +TL G I I +P +S E+++ + V+ L + HP PL G DH FRS PV+
Sbjct: 1115 ESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PLCGRDHLSFRSYYFPVK 1171
Score = 56 (24.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H ES LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHN 805
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 143 (55.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 59/247 (23%), Positives = 108/247 (43%)
Query: 175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIM 234
++L L + T C Y + +AS GN + + + +++ I+
Sbjct: 1048 YKLNLLHITPIEEQPYCFCSYNGK-LIASIGNKLRI--YALGKKKLLKKCEYKDIPEAIV 1104
Query: 235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG 294
+ RI D R+ +L + Y + L I D R + ++D T + +D+
Sbjct: 1105 SIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADKFD 1164
Query: 295 SIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFE- 353
S+ +L + + + E +T C Y GEI S K + + + +G+ + S +
Sbjct: 1165 SVFILRVPEEAKQD---EYGITNKCWYG-GEIMNSSTKNRKLEHMMSFH-IGEIVTSMQK 1219
Query: 354 -----SSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFR 407
+S II ST++G+I FIP + EE EL + ++ + + PL G +H FR
Sbjct: 1220 VRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLE--IILRTEKPPLCGREHIFFR 1277
Query: 408 SRENPVR 414
S +PV+
Sbjct: 1278 SYYHPVQ 1284
Score = 44 (20.5 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 26 ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL--VRVGHEQVLV 83
+ R +I + LN I +DP++G++ + + LG KS+++ V V L+
Sbjct: 685 KERNIIFLNIGLNTGVLLRSI--IDPVAGTLSNHYSKYLG--AKSIKICPVNVNKNPALL 740
Query: 84 V 84
V
Sbjct: 741 V 741
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87
S I ++P++ +L L++ E S+ + L+VGT+
Sbjct: 981 SCIKIINPVNLQILDKISLDMEEAALSVCACELEALHCLIVGTT 1024
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 143 (55.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 59/247 (23%), Positives = 108/247 (43%)
Query: 175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIM 234
++L L + T C Y + +AS GN + + + +++ I+
Sbjct: 1048 YKLNLLHITPIEEQPYCFCSYNGK-LIASIGNKLRI--YALGKKKLLKKCEYKDIPEAIV 1104
Query: 235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG 294
+ RI D R+ +L + Y + L I D R + ++D T + +D+
Sbjct: 1105 SIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADKFD 1164
Query: 295 SIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFE- 353
S+ +L + + + E +T C Y GEI S K + + + +G+ + S +
Sbjct: 1165 SVFILRVPEEAKQD---EYGITNKCWYG-GEIMNSSTKNRKLEHMMSFH-IGEIVTSMQK 1219
Query: 354 -----SSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFR 407
+S II ST++G+I FIP + EE EL + ++ + + PL G +H FR
Sbjct: 1220 VRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLE--IILRTEKPPLCGREHIFFR 1277
Query: 408 SRENPVR 414
S +PV+
Sbjct: 1278 SYYHPVQ 1284
Score = 44 (20.5 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 26 ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL--VRVGHEQVLV 83
+ R +I + LN I +DP++G++ + + LG KS+++ V V L+
Sbjct: 685 KERNIIFLNIGLNTGVLLRSI--IDPVAGTLSNHYSKYLG--AKSIKICPVNVNKNPALL 740
Query: 84 V 84
V
Sbjct: 741 V 741
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87
S I ++P++ +L L++ E S+ + L+VGT+
Sbjct: 981 SCIKIINPVNLQILDKISLDMEEAALSVCACELEALHCLIVGTT 1024
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 145 (56.1 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 48/227 (21%), Positives = 96/227 (42%)
Query: 191 AICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRD 250
A+C + R LA G + F + +R+ + I+ + A R+ V D ++
Sbjct: 961 ALCGFQGR-LLAGCGRMLRIYDF--GKKKMLRKCENKHIPYQIVNIQAMGHRVYVSDVQE 1017
Query: 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNAS 310
+ F Y +L D R V L+D DT ++D+ G++++ + D+
Sbjct: 1018 SVFFIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVD 1077
Query: 311 PECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS--FESSQTTIIASTLLGSI 368
+ T + + G ++ + +K I + + + +I +TL G++
Sbjct: 1078 EDPTGTKSL-WDRGLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTV 1136
Query: 369 VIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
F+P +S E+Y+ + ++ + PL G DH +RS PV+
Sbjct: 1137 GAFVPFTSREDYDFFQHLEMHMRNE--NPPLCGRDHLSYRSSYYPVK 1181
Score = 45 (20.9 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 21/83 (25%), Positives = 32/83 (38%)
Query: 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG----HEQVLVVGTS--LSSGPAIMP 96
+S I C+D + G + S L E SM +++ L VG + L P I
Sbjct: 872 ASQIRCLDAMHGQTMFSVPLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQ 931
Query: 97 SGEAESTKGRLIVLCIEHMQNSD 119
G + K +E M +D
Sbjct: 932 GGCIDIYKIDPTCSSLEFMHRTD 954
Score = 37 (18.1 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+ + H ++ +++ T+ N
Sbjct: 788 FPLQYTPRTFVIHPDTGRMLIAETDHN 814
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 105 (42.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 43/173 (24%), Positives = 70/173 (40%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSI-AVLSC 301
IAVGD I Y + +E+ D + + +++ D + +D +I V
Sbjct: 880 IAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKN 939
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIA 361
++ D + YH+GE R GS + KLP D +G T+I
Sbjct: 940 NEGATDEERARMEVVGE--YHIGEFVNRFRHGSLVMKLPDSD-IGQI--------PTVIF 988
Query: 362 STLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
T+ G I + + E+Y LE +Q L + + G H ++RS N R
Sbjct: 989 GTVSGMIGVIASLPQEQYAFLEKLQTSL--RKVIKGVGGLSHEQWRSFNNEKR 1039
Score = 77 (32.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 28/114 (24%), Positives = 57/114 (50%)
Query: 5 KRLNVRKFHLGGTPKKVLYHSESRLLIV--MRTELNNDTCSSD-ICCVDPLSGSVLSSFK 61
++L++R +G +++ + ++R + +R E + + S + +D S LSS+
Sbjct: 702 QKLHIRTIPIGEHARRICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYP 761
Query: 62 LELGETGKSMELVRVGHEQVLV--VGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113
L+ E G S+ ++ + VGT+ ++P E E TKGR++V +E
Sbjct: 762 LDAFECGCSILSCSFTDDKNVYYCVGTAY-----VLPE-ENEPTKGRILVFIVE 809
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 124 (48.7 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 53/245 (21%), Positives = 101/245 (41%)
Query: 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIML 235
+L + T + LAI P+ R L G + + + +R+ ++
Sbjct: 936 KLEFLHKTPVEDVPLAIAPFQGRV-LVGVGKLLRI--YDLGKKKLLRKCENKHVPNLVTG 992
Query: 236 LTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS 295
+ R+ V D ++ + + Y + +L D R + L+D DT +D+ G+
Sbjct: 993 IHTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGN 1052
Query: 296 IAVLSCSDRLEDNASPECNLTP--NCA-YHMGEIAVSIRKGSFIYKLPADDALGDCLAS- 351
I V+ RL N S + + P N A + G + + +K I + + +
Sbjct: 1053 ICVV----RLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTT 1108
Query: 352 -FESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDHSEFRSR 409
+++ +TL G I I +P +S E+++ + ++ + PL G DH FRS
Sbjct: 1109 LIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSE--FPPLCGRDHLSFRSY 1166
Query: 410 ENPVR 414
PV+
Sbjct: 1167 YFPVK 1171
Score = 51 (23.0 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 12 FHLGGTPKKVLYHSESRLLIVMRTELN 38
F L TP+K + H E+ LI++ T+ N
Sbjct: 779 FPLQYTPRKFVIHPETNNLILIETDHN 805
Score = 44 (20.5 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 49 VDPLSGSVLSSFKLELGETGKSMELVRV---GHEQVLVVGTS 87
++P+ G+ L +LE E S+ + R G + ++VG +
Sbjct: 869 INPIQGNTLDLVQLEQNEAAFSVAICRFLNGGDDWYVLVGVA 910
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 415 399 0.00097 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 617 (66 KB)
Total size of DFA: 251 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.16u 0.11s 28.27t Elapsed: 00:00:02
Total cpu time: 28.16u 0.11s 28.27t Elapsed: 00:00:02
Start: Tue May 21 02:35:21 2013 End: Tue May 21 02:35:23 2013