BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014962
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 39/260 (15%)
Query: 173 ETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFM 232
E +L L T G+ +A+ P+ R LA G + N + +R+ +
Sbjct: 923 EGKKLELISHTEIDGIPMALTPFQGR-MLAGVGRFLRIYDL--GNKKMLRKGELSAVPLF 979
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I +T +RI V D + + F Y + L D R VL+D DT D+
Sbjct: 980 ITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDK 1039
Query: 293 KGSIAVLSCSDRL-----EDNA-------SPECNLTPN-----CAYHMGEIAVSIRKGSF 335
G+I +L C + + E+N+ P N TP+ + +I S++K
Sbjct: 1040 FGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQL 1099
Query: 336 IYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPL 394
+ E ++ ++ + LLG++ +F P I+ E+ + Q +
Sbjct: 1100 V----------------EGAREVLLWTGLLGTVGVFTPFINQEDVRFFQ--QLEFLLRKE 1141
Query: 395 TAPLLGNDHSEFRSRENPVR 414
PL G DH +RS PV+
Sbjct: 1142 CPPLAGRDHLAYRSYYAPVK 1161
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
++ L A +RI VGD ++ I+F SY +L D + V C ++D DT +D+
Sbjct: 993 VVSLDAQGSRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADK 1052
Query: 293 KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASF 352
G+I VL RL+ N S + P + E V + + L A +GD + S
Sbjct: 1053 FGNIYVL----RLDGNTSRSVDEDPTGMTIVHEKPV-LMGAAHKASLVAHFFVGDIITSL 1107
Query: 353 ESS------QTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSE 405
+ + ++ + L GSI +P +S E+ + L +++ L ++G DH
Sbjct: 1108 HRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQE--NNSIVGRDHLA 1165
Query: 406 FRSRENPVR 414
+RS PV+
Sbjct: 1166 YRSSYAPVK 1174
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 19/233 (8%)
Query: 190 LAICPYLDRYFLASAGNAF--YVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD 247
LA+ P+ R LA G Y G Q +R+ T +I+ L + RI VGD
Sbjct: 942 LALIPFQGR-LLAGVGKTLRIYDLGLK----QLLRKAQADVTPTLIVSLQSQGNRIIVGD 996
Query: 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLE- 306
+ GI + Y + +L D R ++D ++ D+ G+I ++ C +R+
Sbjct: 997 LQQGITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERVSQ 1056
Query: 307 --DNASPECNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDCLASFE-SSQTTIIAS 362
D E +L Y H +S++ + LP C S Q ++ S
Sbjct: 1057 ETDEPGSEIHLMHARNYLHGTPNRLSLQVHFYTQDLPT----SICKTSLVVGGQDVLLWS 1112
Query: 363 TLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
L G++ +FIP +S E+ + + ++ + PL G DH +R PV+
Sbjct: 1113 GLQGTVGVFIPFVSREDVDFFQNLENHMRAE--DPPLAGRDHLIYRGYYTPVK 1163
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVRK 415
G DH FRS PV+
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVRK 415
G DH FRS PV+
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVRK 415
G DH FRS PV+
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 46/197 (23%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVRK 415
G DH FRS PV+
Sbjct: 1156 CGRDHLSFRSYYFPVKN 1172
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 44/196 (22%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ + + Y + +L D R + L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTPN---------------------CAYHMGEIAVSIRKGSFIYKLP 340
RL N S + + P YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLL 399
+++ +TL G I I +P +S E+++ + ++ + + PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLE--MHMRSEFPPLC 1156
Query: 400 GNDHSEFRSRENPVRK 415
G DH FRS PV+
Sbjct: 1157 GRDHLSFRSYYFPVKN 1172
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 10/188 (5%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
+I+ L +RI VGD + G+++ +Y + +L D R ++D D+ +D
Sbjct: 988 LIVSLNTQGSRIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGAD 1047
Query: 292 RKGSIAVLSCSDRL---EDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC 348
+ G++ +L C ++ D E +L + Y G S R + D C
Sbjct: 1048 KFGNLWILRCPEKASQESDEPGSEVHLVHSRDYLHG---TSNRLALMAHVYTQDIPTSIC 1104
Query: 349 LASF-ESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEF 406
+ Q ++ G+I + IP +S E+ + ++++ L PL G DH +
Sbjct: 1105 KTNLVVGGQEVLLWGGFQGTIGVLIPFVSREDADFFQSLEQHLRSE--DPPLAGRDHLMY 1162
Query: 407 RSRENPVR 414
R PV+
Sbjct: 1163 RGCYVPVK 1170
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS- 300
R+ VGD ++ I F Y L D + R + V++D DT +D+ G+I VL
Sbjct: 1038 RLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRL 1097
Query: 301 ---CSDRLEDN--------ASPECNLTPNCAYHM-----GEIAVSIRKGSFIYKLPADDA 344
SD +E++ S N P+ H+ G+ ++ K S + P
Sbjct: 1098 PLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPE--- 1154
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDH 403
I+ +T+ G+I IP +S E+ + ++ + L PL G DH
Sbjct: 1155 -------------VILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL--PLCGRDH 1199
Query: 404 SEFRSRENPVR 414
+RS PV+
Sbjct: 1200 LAYRSYYFPVK 1210
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 67/341 (19%)
Query: 103 TKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA 162
+K ++ ++ N SM+ S +S+ +VG T Q + L +S D +
Sbjct: 871 SKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQ---TILPNSYDKS 927
Query: 163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVR 222
K+ + L+L + T + + + D+ +AS GN +R
Sbjct: 928 YLYTFKIGKK---HLQLVHKTELDHIPQVLENFQDKLLVAS-GN-------------HIR 970
Query: 223 RFAVGRTRFM------------IMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYC 269
+ +G+ + + I + RI + D + I+F + E +
Sbjct: 971 LYDIGQKQLLKKSTTIIDFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFVPFAD 1030
Query: 270 DPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTP-------NCAY- 321
D +R + + +D+DT + D+ G+I V + + A + + +C Y
Sbjct: 1031 DVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKTQDGILNSCPYK 1090
Query: 322 -------HMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP- 373
H+G+I S G LA ES +I + L G+I + IP
Sbjct: 1091 LQNLIEFHIGDIITSFNLGCL------------NLAGTES----VIYTGLQGTIGLLIPL 1134
Query: 374 ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
+S E ELL +Q L + L+G DH + RS NP++
Sbjct: 1135 VSKSEVELLFNLQ--LYMQQSQNNLVGKDHLKLRSYYNPIK 1173
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 43/202 (21%)
Query: 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
+RI VGD F Y + D +R + V +D DT + D+ G+I V
Sbjct: 1026 SRIVVGDSSMSTTFVKYDSTENQFIPFADDIMKRQITALVTLDYDTIIGGDKFGNIFVSR 1085
Query: 301 CSDRLEDNASPECN---------------LTPNCAYHMGEIAVSIRKGSFIYKLPADDAL 345
+ + + + + L C +++ +I S KGS +
Sbjct: 1086 VPETISQQSDKDWSLLRYQESYLNGSGSRLKNICEFYLQDIPTSFTKGSLVM-------- 1137
Query: 346 GDCLASFESSQTTIIASTLLGSIVIFIPISSE-EYELLEAVQARLAIH-----------P 393
+ +II + + G++ + +P+S+E E + L +Q L +
Sbjct: 1138 --------GGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDK 1189
Query: 394 LTAPLLGNDHSEFRSRENPVRK 415
LLG DH +FRS NPV+
Sbjct: 1190 NGYNLLGKDHLKFRSYYNPVKN 1211
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3
SV=2
Length = 1209
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 18/191 (9%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I+ L +RI V D R+ + + Y L D R ++D +T D+
Sbjct: 982 IVGLQTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDK 1041
Query: 293 KGSIAVLSCSDRLEDNASPE---CNLTPNCAYHMG-----EIAVSIRKGSFIYKLPADDA 344
G++ ++ C + + A E +L + Y G E+ + + F +P
Sbjct: 1042 FGNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIHV----FTQDIPTSLH 1097
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDH 403
+A + ++ + G+I I +P +S E+ + ++++ +LA PL G DH
Sbjct: 1098 KTQLVAG---GRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQ--CPPLAGRDH 1152
Query: 404 SEFRSRENPVR 414
+RS PV+
Sbjct: 1153 LIYRSYYAPVK 1163
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 25/236 (10%)
Query: 190 LAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF---TRIA 244
LA+C Y + +A G+ Y G Q +R+ + ++ + L AHF R+A
Sbjct: 880 LALCAY-NGLLVAGIGSQVRLYALGLK----QVLRKAQIELSKRVTCL--AHFAGSNRVA 932
Query: 245 VGDCRDGILFYSYHED--ARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
VGD R + E+ + + CD R V +D +T + DR G +L
Sbjct: 933 VGDIRQSVTVCVVLEEDSGHVIYPLVCDKISRQVTCLFFVDYETVALGDRFGGFTML--- 989
Query: 303 DRLEDNASPECNLTPNCAYHMGEIAVSIR-KGSFIYKLPADDALGDCLASFESSQTTIIA 361
R+ AS + N A H+ ++ ++ F + A + D + ++
Sbjct: 990 -RIPSEASKLADEDHN-AVHLRQLEPTLNGPAHFRFDHVASFHIEDVPVAIHMYNDYLVV 1047
Query: 362 STLLGSIVIFIP-ISSEEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVRK 415
LLG++ F+P +S ++ L+ ++ + A P L+G DH FR PV++
Sbjct: 1048 CGLLGTVSAFVPVVSPKQSRDLKTIEKFVCASDP---GLMGRDHGRFRGYYVPVKE 1100
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3 SV=2
Length = 1288
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 23/232 (9%)
Query: 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDN--PQRVRRFA 225
K ++L + T + A+CP+ D+ L NA + G + +
Sbjct: 947 KAANNRRFELLALHDTVAGSTIHAMCPFHDK-LLVPLANAVVLYGLGKKQLLKKSISYLP 1005
Query: 226 VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD 285
T+ ++ L + TR+AVGD + + + E + + D ++R V +D
Sbjct: 1006 TSITK-IVALDQWNGTRVAVGDIHESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDEC 1064
Query: 286 TAVVSDRKGSIAVLSCS---DRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPAD 342
T + DR G+I +L DRL LT N I +IR+ F ++L
Sbjct: 1065 TVIGGDRFGNIWLLRLPLEYDRLIKEGVDSYLLTLNTG-----IPSNIRECVFKWQLLNH 1119
Query: 343 DALGDCLASFE-------SSQTTIIASTLLGSIVIFIPISS----EEYELLE 383
+ D SF + + +I+ + L G+I IP+ + E ++LLE
Sbjct: 1120 FYINDIPMSFHLIASPQMADRASILYAGLQGTIGYLIPLITRREIEFFDLLE 1171
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
IAVGD I Y + +E+ D + + +++ D + +D +I + +
Sbjct: 880 IAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKN 939
Query: 303 DRLEDNASPE--CNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII 360
+ + A+ E + YH+GE R GS + KLP D +G T+I
Sbjct: 940 N---EGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLP-DSDIGQI--------PTVI 987
Query: 361 ASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
T+ G I + + E+Y LE +Q L + + G H ++RS N R
Sbjct: 988 FGTVSGMIGVIASLPQEQYAFLEKLQTSL--RKVIKGVGGLSHEQWRSFNNEKR 1039
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
I VGD I Y + +E+ D + ++ ++D D + ++ + +L+
Sbjct: 880 IVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN--NFNLLTVK 937
Query: 303 DRLEDNASPE-CNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIA 361
E E L YH+GE R GS + +LP D +G T+I
Sbjct: 938 KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSEIGQI--------PTVIF 988
Query: 362 STLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVR 414
T+ G I + + E+Y LE +Q+ L + + G H ++RS N R
Sbjct: 989 GTVNGVIGVIASLPQEQYTFLEKLQSSL--RKVIKGVGGLSHEQWRSFNNEKR 1039
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I+ L +RI V D R+ + + Y L D R ++D +T D+
Sbjct: 982 IVGLQTQGSRIVVSDVRESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDK 1041
Query: 293 KGSIAVLSCSDRLEDNASPE---CNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDC 348
G++ ++ C + + A + +L Y H + + ++ +P
Sbjct: 1042 FGNLWLVRCPKKASEEADEDGSGAHLIHERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQL 1101
Query: 349 LASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFR 407
+A + ++ + G+I + +P +S E+ + + ++ +LA PL G DH +R
Sbjct: 1102 VAG---GRDILVWTGFQGTIGMLVPFVSREDVDFFQNLEMQLASQ--CPPLAGRDHLIYR 1156
Query: 408 SRENPVR 414
S PV+
Sbjct: 1157 SYYAPVK 1163
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVDTAVVSD 291
++ + RI VGD ++ + Y + I+ D SQ CV +D +T D
Sbjct: 989 VVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGD 1048
Query: 292 RKGSIAV----LSCSDRLEDNASPECNLTPNC----AYHMGEIAVSIRKGSF---IYKLP 340
+ G+I + S S++++D+ + L A H E+ GS I K+P
Sbjct: 1049 KFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIP 1108
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLL 399
+ ++ +T+ G++ +P +SS++ E + ++ + ++ L+
Sbjct: 1109 L----------VAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDIS--LV 1156
Query: 400 GNDHSEFRSRENPVR 414
G DH +R P++
Sbjct: 1157 GRDHIAYRGYYVPIK 1171
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVDTAVVSD 291
++ + RI VGD ++ + Y + I+ D SQ CV +D +T D
Sbjct: 989 VVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGD 1048
Query: 292 RKGSIAV----LSCSDRLEDNASPECNLTPNC----AYHMGEIAVSIRKGSF---IYKLP 340
+ G+I + S S++++D+ + L A H E+ GS I K+P
Sbjct: 1049 KFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIP 1108
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLL 399
+ ++ +T+ G++ +P +SS++ E + ++ + ++ L+
Sbjct: 1109 L----------VAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDIS--LV 1156
Query: 400 GNDHSEFRSRENPVR 414
G DH +R P++
Sbjct: 1157 GRDHIAYRGYYVPIK 1171
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 321 YHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYE 380
YH+GE R GS + +LP D T+I T+ G I + + ++Y
Sbjct: 964 YHLGEFVNRFRHGSLVMRLPDSDV---------GQIPTVIFGTVNGVIGVIASLPHDQYL 1014
Query: 381 LLEAVQARLAIHPLTAPLLGNDHSEFRSREN 411
LE +Q L + + G H ++RS N
Sbjct: 1015 FLEKLQTNL--RKVIKGVGGLSHEQWRSFYN 1043
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 321 YHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYE 380
YH+GE R GS + +LP D T+I T+ G I + + ++Y
Sbjct: 959 YHLGEFVNRFRHGSLVMRLPDSDV---------GQIPTVIFGTVNGVIGVIASLPHDQYL 1009
Query: 381 LLEAVQARLAIHPLTAPLLGNDHSEFRSREN 411
LE +Q L + + G H ++RS N
Sbjct: 1010 FLEKLQTNL--RKVIKGVGGLSHEQWRSFYN 1038
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 225 AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV 284
+V + MI+ L + I VGD + D LEQI +P + +++
Sbjct: 956 SVHKGHTMILKLASRGHFILVGDMMKSMSLLVEQSDG-SLEQIARNPQPIWIRSVAMIND 1014
Query: 285 DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDA 344
D + ++ + V+ ++ + E L YH+GE S+R GS + +LP D
Sbjct: 1015 DYFIGAEASNNFIVVKKNNDSTNELEREL-LDSVGHYHIGESINSMRHGSLV-RLPDSD- 1071
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHS 404
+ TI+ +++ GSI + IS E++ +Q ++ + + G H
Sbjct: 1072 --------QPIIPTILYASVNGSIGVVASISEEDFIFFSKLQK--GLNQVVRGVGGFSHE 1121
Query: 405 EFRSREN 411
+R+ N
Sbjct: 1122 TWRAFSN 1128
>sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic
OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2
Length = 819
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 192 ICPYL-DRYFLASAGNAFYVCGFP----NDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVG 246
+CPYL ++ S NAF + GFP + + + A G+ +++ A F + +G
Sbjct: 141 VCPYLAPEPYIKSLQNAFMIVGFPLVGVSASLDALMDIAGGKVNIHVLMALAAFASVFMG 200
Query: 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV 289
+ +G L + A E+ + S V + + D+A++
Sbjct: 201 NALEGGLLLAMFNLAHIAEEFFTSRSMVDVKELKESNPDSALL 243
>sp|A1C3U1|CFT1_ASPCL Protein cft1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cft1 PE=3 SV=1
Length = 1401
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 245 VGDCRDGILFYSYHEDARKLEQIYCD-PSQRLVADCVLMDVDT--AVVSDRKGSIAVLSC 301
VGD GI F Y E+ K+ D +VA L D D +V+D ++ VL
Sbjct: 1179 VGDAFKGIWFAGYSEEPYKMSLFGKDLEYPEVVAADFLPDGDKLFILVADSDCNLHVLQY 1238
Query: 302 S--DRLEDNASPECNLTPNCAYHMGEIAVSIR---KGSFIYKLPADDALGDCLASFESSQ 356
D + N L +HMG ++ + + Y++P+ D+ + + Q
Sbjct: 1239 EPEDPMSSNGD---KLLVRSKFHMGHFTSTLTLLPRTTASYEIPSADSDSMEVDPRITPQ 1295
Query: 357 TTIIASTLLGSIVIFIPISSEEYELLEAVQARLA 390
+I S GSI I I E Y L A+Q++LA
Sbjct: 1296 QVLITSQS-GSIGIVTSIPEESYRRLSALQSQLA 1328
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 31/161 (19%)
Query: 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
T +AVGD R+ + + Y D + D +R V +DV + + DR G+ VL
Sbjct: 1017 TMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLR 1076
Query: 301 C---SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFE---- 353
SD + C T HM + D FE
Sbjct: 1077 VNYESDTRVASNIKACQYTLETLCHM--------------------YMNDTPMKFEIVNH 1116
Query: 354 ---SSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLA 390
S + I+ L G+I F+P I+ +E +L ++ Q+ A
Sbjct: 1117 MNMSDRPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYA 1157
>sp|P17056|CRTB_RHOCB Phytoene synthase OS=Rhodobacter capsulatus (strain ATCC BAA-309 /
NBRC 16581 / SB1003) GN=crtB PE=3 SV=1
Length = 339
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 255 YSYHEDARKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSDRLED 307
YS+H +R L DP+ L A C + D VD V + R + AVL DRLED
Sbjct: 19 YSFHAASRVLPARVRDPALALYAFCRVADDEVDE-VGAPRDKAAAVLKLGDRLED 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,799,350
Number of Sequences: 539616
Number of extensions: 5709367
Number of successful extensions: 12072
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12034
Number of HSP's gapped (non-prelim): 39
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)