Query 014962
Match_columns 415
No_of_seqs 120 out of 551
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 01:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1897 Damage-specific DNA bi 100.0 3.6E-63 7.8E-68 524.1 33.7 331 1-411 700-1039(1096)
2 KOG1896 mRNA cleavage and poly 100.0 4.4E-57 9.5E-62 484.5 30.3 336 4-412 942-1311(1366)
3 PF03178 CPSF_A: CPSF A subuni 100.0 3.1E-55 6.7E-60 435.6 35.6 293 43-412 1-302 (321)
4 KOG1898 Splicing factor 3b, su 100.0 3.6E-55 7.8E-60 465.1 30.1 327 5-415 763-1161(1205)
5 COG5161 SFT1 Pre-mRNA cleavage 100.0 3.9E-45 8.4E-50 381.1 28.3 335 4-410 897-1262(1319)
6 KOG0318 WD40 repeat stress pro 98.2 0.00021 4.5E-09 73.9 21.2 199 12-302 402-602 (603)
7 PF03178 CPSF_A: CPSF A subuni 97.8 0.014 3.1E-07 58.0 25.9 209 8-300 14-263 (321)
8 cd00200 WD40 WD40 domain, foun 97.6 0.048 1E-06 49.9 26.5 111 185-302 134-249 (289)
9 PRK11028 6-phosphogluconolacto 97.2 0.24 5.3E-06 49.0 24.4 129 196-332 185-327 (330)
10 PLN00181 protein SPA1-RELATED; 97.0 0.25 5.4E-06 55.4 25.1 117 185-301 660-792 (793)
11 cd00200 WD40 WD40 domain, foun 97.0 0.28 6.1E-06 44.7 27.6 191 17-302 11-207 (289)
12 KOG0315 G-protein beta subunit 96.9 0.14 3E-06 49.2 18.5 107 187-296 168-282 (311)
13 KOG1036 Mitotic spindle checkp 96.7 0.41 8.8E-06 47.2 20.7 190 16-302 14-207 (323)
14 KOG1539 WD repeat protein [Gen 96.7 0.15 3.2E-06 55.9 19.1 160 175-371 64-229 (910)
15 PRK11028 6-phosphogluconolacto 96.5 0.92 2E-05 44.8 22.5 187 12-282 122-328 (330)
16 KOG1273 WD40 repeat protein [G 96.1 0.3 6.5E-06 48.4 15.9 173 187-391 66-249 (405)
17 KOG0306 WD40-repeat-containing 96.0 1 2.2E-05 49.3 20.3 200 44-297 394-617 (888)
18 PTZ00420 coronin; Provisional 95.9 3.3 7.2E-05 44.9 25.1 113 186-303 167-294 (568)
19 KOG2110 Uncharacterized conser 95.7 2.8 6E-05 42.5 22.8 138 44-260 106-250 (391)
20 KOG0282 mRNA splicing factor [ 95.6 0.14 2.9E-06 53.1 11.7 206 44-370 280-501 (503)
21 KOG0310 Conserved WD40 repeat- 95.6 3.6 7.7E-05 42.9 21.8 191 17-300 112-307 (487)
22 KOG2106 Uncharacterized conser 95.4 4.2 9.1E-05 42.8 22.4 200 12-300 404-624 (626)
23 KOG0291 WD40-repeat-containing 95.3 2.2 4.9E-05 46.7 20.0 193 20-303 355-551 (893)
24 PLN00181 protein SPA1-RELATED; 95.3 6.5 0.00014 44.1 30.0 112 186-302 617-738 (793)
25 KOG0291 WD40-repeat-containing 95.2 6.1 0.00013 43.5 25.4 123 179-302 89-219 (893)
26 KOG0289 mRNA splicing factor [ 94.7 5.4 0.00012 41.3 19.8 101 186-290 389-493 (506)
27 KOG2048 WD40 repeat protein [G 94.7 2.7 5.9E-05 45.4 18.4 104 196-302 440-548 (691)
28 TIGR03866 PQQ_ABC_repeats PQQ- 94.4 4.7 0.0001 38.0 25.8 66 10-86 67-133 (300)
29 KOG1036 Mitotic spindle checkp 93.9 5.3 0.00012 39.6 17.1 167 40-291 112-293 (323)
30 KOG0646 WD40 repeat protein [G 93.8 6.8 0.00015 40.8 18.3 55 182-240 77-133 (476)
31 KOG0289 mRNA splicing factor [ 93.4 1.6 3.5E-05 45.0 13.1 55 41-114 366-420 (506)
32 KOG0283 WD40 repeat-containing 93.3 1.8 3.8E-05 47.6 14.1 141 44-260 432-578 (712)
33 KOG4441 Proteins containing BT 93.3 3.9 8.4E-05 44.4 16.9 114 176-295 407-534 (571)
34 PF08662 eIF2A: Eukaryotic tra 93.1 3.7 7.9E-05 37.9 14.4 83 6-113 48-133 (194)
35 KOG1274 WD40 repeat protein [G 93.1 2 4.3E-05 48.0 14.1 39 13-58 136-174 (933)
36 KOG1446 Histone H3 (Lys4) meth 93.0 2.1 4.6E-05 42.3 12.9 83 8-113 176-262 (311)
37 KOG0772 Uncharacterized conser 92.9 11 0.00024 39.9 18.5 123 176-300 304-443 (641)
38 PF13360 PQQ_2: PQQ-like domai 92.9 5.8 0.00013 36.6 15.6 98 196-302 122-230 (238)
39 PF10282 Lactonase: Lactonase, 92.8 11 0.00025 37.7 23.5 92 189-281 247-345 (345)
40 COG2706 3-carboxymuconate cycl 92.8 7.1 0.00015 39.4 16.5 138 7-225 182-331 (346)
41 KOG0296 Angio-associated migra 92.7 0.58 1.3E-05 47.1 8.7 64 180-245 321-385 (399)
42 KOG0288 WD40 repeat protein Ti 92.5 1.5 3.2E-05 45.0 11.3 82 9-113 335-417 (459)
43 KOG1273 WD40 repeat protein [G 92.4 6.5 0.00014 39.3 15.2 63 239-302 260-322 (405)
44 KOG0315 G-protein beta subunit 92.4 1.6 3.4E-05 42.3 10.7 112 187-303 41-155 (311)
45 KOG0646 WD40 repeat protein [G 92.2 0.71 1.5E-05 47.7 8.8 106 191-303 44-154 (476)
46 KOG3881 Uncharacterized conser 92.2 2.9 6.4E-05 42.5 12.9 135 183-329 102-251 (412)
47 KOG2048 WD40 repeat protein [G 91.7 23 0.0005 38.6 23.3 69 8-85 17-87 (691)
48 PF13360 PQQ_2: PQQ-like domai 91.7 11 0.00023 34.8 19.2 104 193-300 73-189 (238)
49 KOG2111 Uncharacterized conser 91.7 16 0.00034 36.6 21.7 126 177-303 124-257 (346)
50 PTZ00420 coronin; Provisional 91.6 9.1 0.0002 41.5 16.9 84 11-113 163-248 (568)
51 KOG2394 WD40 protein DMR-N9 [G 91.4 3.7 8.1E-05 43.5 13.1 88 186-281 290-382 (636)
52 KOG0299 U3 snoRNP-associated p 91.4 2.8 6.1E-05 43.4 12.1 111 183-301 241-355 (479)
53 KOG1274 WD40 repeat protein [G 91.4 29 0.00063 39.2 21.8 104 196-302 107-218 (933)
54 TIGR03300 assembly_YfgL outer 91.2 18 0.00039 36.4 19.5 96 196-301 241-337 (377)
55 KOG0650 WD40 repeat nucleolar 91.1 2.7 5.8E-05 45.1 11.8 106 186-300 566-678 (733)
56 PHA03098 kelch-like protein; P 90.4 18 0.0004 38.4 17.9 91 192-286 385-490 (534)
57 PF08596 Lgl_C: Lethal giant l 90.4 15 0.00034 37.9 16.7 102 43-215 106-244 (395)
58 KOG2110 Uncharacterized conser 90.2 23 0.00051 36.0 17.9 145 175-335 68-226 (391)
59 KOG0282 mRNA splicing factor [ 90.2 2.7 5.8E-05 43.8 10.7 201 9-299 293-502 (503)
60 KOG0266 WD40 repeat-containing 90.0 28 0.0006 36.5 25.3 115 183-302 243-364 (456)
61 KOG0283 WD40 repeat-containing 89.9 15 0.00032 40.7 16.5 172 45-304 391-578 (712)
62 PHA02713 hypothetical protein; 89.9 24 0.00051 38.2 18.4 95 206-303 432-532 (557)
63 KOG0278 Serine/threonine kinas 89.7 4.9 0.00011 38.9 11.3 65 8-85 177-242 (334)
64 COG2706 3-carboxymuconate cycl 89.6 7.8 0.00017 39.1 13.1 124 200-330 207-342 (346)
65 KOG1407 WD40 repeat protein [F 89.4 11 0.00023 36.9 13.4 79 178-258 139-219 (313)
66 cd00216 PQQ_DH Dehydrogenases 89.4 32 0.00069 36.4 19.2 45 21-65 222-277 (488)
67 KOG0278 Serine/threonine kinas 89.3 7.3 0.00016 37.8 12.1 120 177-303 175-298 (334)
68 KOG0305 Anaphase promoting com 89.0 35 0.00076 36.3 19.3 232 15-303 217-462 (484)
69 PTZ00421 coronin; Provisional 88.8 36 0.00079 36.3 24.0 114 185-303 167-291 (493)
70 PF10282 Lactonase: Lactonase, 88.3 30 0.00064 34.7 28.3 137 187-330 192-343 (345)
71 KOG1517 Guanine nucleotide bin 88.2 57 0.0012 37.8 21.9 228 17-333 1066-1313(1387)
72 KOG1539 WD repeat protein [Gen 87.8 52 0.0011 36.9 23.0 114 184-300 200-318 (910)
73 TIGR03866 PQQ_ABC_repeats PQQ- 87.5 25 0.00054 32.9 22.9 79 9-113 108-187 (300)
74 PF07433 DUF1513: Protein of u 87.5 33 0.00071 34.3 16.9 81 9-89 91-183 (305)
75 KOG4441 Proteins containing BT 87.3 35 0.00075 37.1 17.5 104 182-294 376-486 (571)
76 KOG0263 Transcription initiati 87.1 8.8 0.00019 42.1 12.5 70 17-113 537-607 (707)
77 KOG0316 Conserved WD40 repeat- 86.8 15 0.00032 35.5 12.4 142 201-384 74-220 (307)
78 KOG2096 WD40 repeat protein [G 86.7 38 0.00081 34.1 19.3 104 197-303 199-309 (420)
79 PF14783 BBS2_Mid: Ciliary BBS 86.1 6.4 0.00014 33.4 8.7 64 276-373 2-70 (111)
80 PRK11138 outer membrane biogen 85.5 45 0.00097 33.9 18.7 96 196-301 256-352 (394)
81 KOG1898 Splicing factor 3b, su 85.4 9.3 0.0002 43.7 11.8 194 54-303 811-1005(1205)
82 PF00780 CNH: CNH domain; Int 84.9 29 0.00063 33.0 14.1 111 189-302 38-165 (275)
83 KOG0645 WD40 repeat protein [G 84.8 42 0.00092 33.0 21.4 238 16-370 62-307 (312)
84 KOG0318 WD40 repeat stress pro 84.7 17 0.00036 38.7 12.7 132 182-331 439-580 (603)
85 KOG0310 Conserved WD40 repeat- 84.7 19 0.00042 37.7 13.0 112 13-212 194-306 (487)
86 KOG0286 G-protein beta subunit 84.4 44 0.00096 33.2 14.7 122 176-302 42-174 (343)
87 KOG3621 WD40 repeat-containing 84.3 17 0.00036 39.9 12.8 163 43-283 54-222 (726)
88 KOG0308 Conserved WD40 repeat- 84.2 11 0.00024 40.9 11.4 112 186-301 171-284 (735)
89 KOG2919 Guanine nucleotide-bin 84.1 26 0.00057 35.2 13.2 52 46-114 135-188 (406)
90 TIGR03300 assembly_YfgL outer 84.0 49 0.0011 33.2 17.0 21 44-64 75-95 (377)
91 PF14761 HPS3_N: Hermansky-Pud 83.2 4.7 0.0001 38.1 7.4 73 176-250 125-207 (215)
92 KOG0273 Beta-transducin family 83.1 12 0.00027 39.1 10.8 114 186-306 235-351 (524)
93 PF00780 CNH: CNH domain; Int 83.1 16 0.00035 34.9 11.4 67 198-267 106-172 (275)
94 PF11768 DUF3312: Protein of u 82.4 11 0.00023 40.5 10.4 83 2-113 246-329 (545)
95 KOG3914 WD repeat protein WDR4 82.4 14 0.0003 37.8 10.8 106 196-304 73-183 (390)
96 KOG0271 Notchless-like WD40 re 82.3 31 0.00067 35.5 13.1 112 187-303 116-236 (480)
97 TIGR02658 TTQ_MADH_Hv methylam 82.0 63 0.0014 33.0 25.9 56 9-65 40-98 (352)
98 KOG0319 WD40-repeat-containing 81.9 44 0.00096 36.9 14.9 113 186-303 323-443 (775)
99 PF15390 DUF4613: Domain of un 81.9 13 0.00029 40.1 10.8 99 7-113 328-431 (671)
100 KOG0316 Conserved WD40 repeat- 81.9 52 0.0011 31.9 14.8 114 183-303 142-258 (307)
101 KOG3881 Uncharacterized conser 81.8 11 0.00024 38.6 9.7 99 43-223 225-327 (412)
102 KOG2321 WD40 repeat protein [G 81.6 9.6 0.00021 40.9 9.6 99 200-302 149-258 (703)
103 KOG4378 Nuclear protein COP1 [ 81.6 55 0.0012 34.8 14.8 97 180-284 206-304 (673)
104 PHA02713 hypothetical protein; 81.4 66 0.0014 34.8 16.5 81 207-290 368-470 (557)
105 KOG2055 WD40 repeat protein [G 80.5 41 0.00089 35.3 13.5 116 183-300 210-331 (514)
106 KOG2445 Nuclear pore complex c 79.3 11 0.00023 37.7 8.5 40 64-114 167-208 (361)
107 KOG2321 WD40 repeat protein [G 78.9 9.2 0.0002 41.0 8.4 87 12-114 130-259 (703)
108 KOG1897 Damage-specific DNA bi 77.4 1.4E+02 0.0031 34.4 25.4 141 176-329 759-918 (1096)
109 PF08728 CRT10: CRT10; InterP 77.0 8.5 0.00018 42.7 7.9 70 232-301 165-245 (717)
110 KOG4227 WD40 repeat protein [G 76.0 64 0.0014 33.4 13.1 57 248-304 262-324 (609)
111 PLN02153 epithiospecifier prot 75.4 91 0.002 31.0 18.8 36 253-288 218-256 (341)
112 KOG0306 WD40-repeat-containing 74.6 12 0.00025 41.4 8.0 100 184-290 63-166 (888)
113 PF14781 BBS2_N: Ciliary BBSom 73.6 56 0.0012 28.7 10.6 37 61-114 43-82 (136)
114 PF12234 Rav1p_C: RAVE protein 73.0 67 0.0014 35.4 13.4 129 12-215 25-157 (631)
115 KOG0266 WD40 repeat-containing 72.2 75 0.0016 33.3 13.4 116 185-304 202-320 (456)
116 KOG4378 Nuclear protein COP1 [ 71.7 80 0.0017 33.7 12.9 82 10-114 159-240 (673)
117 KOG0268 Sof1-like rRNA process 71.1 16 0.00036 37.1 7.6 113 179-300 140-257 (433)
118 KOG0294 WD40 repeat-containing 70.5 1.2E+02 0.0027 30.4 15.6 58 246-303 165-238 (362)
119 PF07433 DUF1513: Protein of u 69.7 97 0.0021 31.0 12.7 85 12-113 1-85 (305)
120 KOG0274 Cdc4 and related F-box 68.9 1.7E+02 0.0038 31.6 20.2 112 185-303 370-483 (537)
121 KOG0296 Angio-associated migra 68.2 1.5E+02 0.0032 30.4 16.2 112 183-303 61-179 (399)
122 PF02239 Cytochrom_D1: Cytochr 68.1 1.5E+02 0.0032 30.3 18.4 71 7-88 27-98 (369)
123 KOG0305 Anaphase promoting com 67.5 1.4E+02 0.0031 31.8 14.1 52 44-114 197-248 (484)
124 KOG0273 Beta-transducin family 67.3 1.7E+02 0.0038 30.9 17.8 109 185-303 358-483 (524)
125 KOG2106 Uncharacterized conser 67.2 1.8E+02 0.004 31.1 28.0 70 184-259 285-367 (626)
126 PF08450 SGL: SMP-30/Gluconola 66.9 1.1E+02 0.0024 28.5 15.8 113 183-302 37-164 (246)
127 KOG4649 PQQ (pyrrolo-quinoline 65.8 1.4E+02 0.0031 29.4 16.4 67 20-113 15-81 (354)
128 KOG0299 U3 snoRNP-associated p 65.7 1.8E+02 0.004 30.6 17.5 132 186-331 286-432 (479)
129 KOG0279 G protein beta subunit 65.6 1.5E+02 0.0032 29.5 15.4 115 181-302 62-180 (315)
130 KOG0293 WD40 repeat-containing 65.3 1.7E+02 0.0037 30.6 13.5 200 12-302 266-470 (519)
131 PF15390 DUF4613: Domain of un 63.9 25 0.00055 38.0 7.7 62 184-247 153-220 (671)
132 PRK11138 outer membrane biogen 63.3 1.8E+02 0.0038 29.5 15.6 101 195-302 293-394 (394)
133 KOG0647 mRNA export protein (c 63.1 1.5E+02 0.0033 29.7 12.3 126 176-303 146-282 (347)
134 PF14655 RAB3GAP2_N: Rab3 GTPa 62.6 53 0.0012 34.3 9.7 28 60-87 51-87 (415)
135 KOG0277 Peroxisomal targeting 62.6 1.6E+02 0.0035 28.9 15.2 41 176-216 50-93 (311)
136 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.9 2.3E+02 0.005 30.4 14.9 69 234-302 239-333 (527)
137 PF14783 BBS2_Mid: Ciliary BBS 61.5 1E+02 0.0022 26.2 12.6 43 178-223 34-77 (111)
138 PF14727 PHTB1_N: PTHB1 N-term 60.1 2.2E+02 0.0049 29.7 22.1 154 178-335 63-249 (418)
139 KOG0319 WD40-repeat-containing 59.6 1.9E+02 0.0042 32.2 13.4 110 186-301 105-221 (775)
140 COG3490 Uncharacterized protei 59.1 28 0.00061 34.6 6.5 74 17-90 163-247 (366)
141 PF02239 Cytochrom_D1: Cytochr 58.6 22 0.00047 36.4 6.1 50 8-63 70-119 (369)
142 KOG1408 WD40 repeat protein [F 57.3 64 0.0014 35.9 9.3 114 186-303 596-714 (1080)
143 KOG0290 Conserved WD40 repeat- 56.0 2.2E+02 0.0049 28.5 12.4 114 183-301 93-226 (364)
144 PF08596 Lgl_C: Lethal giant l 55.7 2.5E+02 0.0055 29.0 14.6 29 186-215 86-116 (395)
145 KOG0294 WD40 repeat-containing 54.8 2.4E+02 0.0052 28.5 17.3 121 197-331 180-304 (362)
146 KOG3621 WD40 repeat-containing 54.6 70 0.0015 35.3 9.1 108 195-303 43-155 (726)
147 PTZ00421 coronin; Provisional 53.9 3E+02 0.0066 29.3 21.5 70 17-113 127-198 (493)
148 KOG0274 Cdc4 and related F-box 53.7 3.2E+02 0.007 29.6 19.3 109 185-303 290-401 (537)
149 COG5276 Uncharacterized conser 53.5 2.5E+02 0.0054 28.3 13.8 123 176-302 76-199 (370)
150 KOG0276 Vesicle coat complex C 52.6 3.6E+02 0.0078 29.8 21.7 190 18-302 16-215 (794)
151 KOG0269 WD40 repeat-containing 52.4 64 0.0014 36.0 8.4 72 16-113 134-207 (839)
152 KOG2079 Vacuolar assembly/sort 50.5 44 0.00095 38.6 7.1 75 183-259 127-206 (1206)
153 KOG4328 WD40 protein [Function 50.3 1E+02 0.0022 32.4 9.2 113 183-302 183-309 (498)
154 PHA03098 kelch-like protein; P 49.5 3.3E+02 0.0072 28.8 13.6 79 207-288 359-442 (534)
155 KOG2394 WD40 protein DMR-N9 [G 49.2 2.6E+02 0.0056 30.3 12.0 115 187-301 124-249 (636)
156 KOG0275 Conserved WD40 repeat- 48.7 3.1E+02 0.0067 27.9 13.0 110 188-304 308-425 (508)
157 PF12341 DUF3639: Protein of u 48.4 26 0.00056 22.1 2.9 22 65-90 1-22 (27)
158 PF14870 PSII_BNR: Photosynthe 48.4 2.9E+02 0.0063 27.5 19.5 207 2-300 3-213 (302)
159 KOG1587 Cytoplasmic dynein int 47.9 2E+02 0.0044 31.3 11.5 113 185-303 397-517 (555)
160 KOG0640 mRNA cleavage stimulat 47.8 64 0.0014 32.4 7.0 139 184-332 170-313 (430)
161 KOG4649 PQQ (pyrrolo-quinoline 47.7 2.9E+02 0.0063 27.3 12.0 61 239-301 62-122 (354)
162 KOG4283 Transcription-coupled 47.6 3.1E+02 0.0067 27.6 14.0 112 183-300 243-363 (397)
163 KOG2096 WD40 repeat protein [G 47.5 3.2E+02 0.007 27.8 13.3 23 12-35 130-152 (420)
164 KOG1407 WD40 repeat protein [F 47.3 2.9E+02 0.0064 27.2 15.2 48 9-63 100-147 (313)
165 KOG0288 WD40 repeat protein Ti 47.1 3E+02 0.0065 28.7 11.8 112 180-296 335-455 (459)
166 KOG1900 Nuclear pore complex, 46.8 1.6E+02 0.0036 34.9 11.0 103 196-303 90-208 (1311)
167 KOG0270 WD40 repeat-containing 45.8 3.8E+02 0.0083 28.2 13.9 31 186-216 243-276 (463)
168 PF11239 DUF3040: Protein of u 45.7 16 0.00035 29.0 2.1 20 372-391 1-20 (82)
169 KOG0649 WD40 repeat protein [G 45.3 3.1E+02 0.0067 26.9 14.9 122 176-301 52-185 (325)
170 PF05096 Glu_cyclase_2: Glutam 44.9 3.1E+02 0.0068 26.9 19.4 140 42-266 66-209 (264)
171 KOG0647 mRNA export protein (c 44.7 3.4E+02 0.0074 27.3 20.5 114 183-303 110-229 (347)
172 KOG0641 WD40 repeat protein [G 43.7 3.1E+02 0.0067 26.5 12.7 130 174-303 20-172 (350)
173 PF04762 IKI3: IKI3 family; I 43.6 5.8E+02 0.013 29.6 24.3 233 16-303 305-565 (928)
174 KOG0640 mRNA cleavage stimulat 42.5 3.8E+02 0.0082 27.2 13.1 74 16-113 217-291 (430)
175 PLN02772 guanylate kinase 40.4 1.9E+02 0.0042 30.0 9.5 39 265-303 67-109 (398)
176 KOG1034 Transcriptional repres 40.2 2.1E+02 0.0045 29.1 9.2 112 187-302 136-278 (385)
177 KOG0275 Conserved WD40 repeat- 38.4 1.9E+02 0.0041 29.3 8.6 112 184-300 261-376 (508)
178 KOG0772 Uncharacterized conser 38.1 97 0.0021 33.2 6.9 69 15-87 409-477 (641)
179 PF09202 Rio2_N: Rio2, N-termi 37.5 14 0.0003 29.6 0.6 22 374-395 4-25 (82)
180 TIGR03548 mutarot_permut cycli 37.4 4.1E+02 0.0088 26.0 18.5 33 253-285 272-305 (323)
181 KOG0643 Translation initiation 36.4 4.4E+02 0.0096 26.2 23.0 138 180-330 87-237 (327)
182 PF14779 BBS1: Ciliary BBSome 35.2 2.1E+02 0.0045 28.0 8.3 26 62-87 173-203 (257)
183 PF02333 Phytase: Phytase; In 34.4 5.4E+02 0.012 26.6 12.9 100 198-302 68-189 (381)
184 KOG0301 Phospholipase A2-activ 34.2 5.3E+02 0.012 28.7 11.8 107 185-303 178-289 (745)
185 KOG3617 WD40 and TPR repeat-co 33.8 1.1E+02 0.0023 35.0 6.6 70 189-259 62-132 (1416)
186 KOG0771 Prolactin regulatory e 33.4 1.5E+02 0.0031 30.8 7.2 68 232-301 283-355 (398)
187 PLN02193 nitrile-specifier pro 33.0 6E+02 0.013 26.7 19.0 33 253-285 344-379 (470)
188 KOG0321 WD40 repeat-containing 32.5 7.3E+02 0.016 27.5 12.8 116 186-301 100-247 (720)
189 KOG1034 Transcriptional repres 32.3 2.9E+02 0.0063 28.1 8.8 99 200-302 107-211 (385)
190 PF06977 SdiA-regulated: SdiA- 32.1 4.7E+02 0.01 25.2 18.0 83 6-113 9-94 (248)
191 KOG1275 PAB-dependent poly(A) 31.5 8.8E+02 0.019 28.2 13.6 30 271-300 310-340 (1118)
192 KOG1538 Uncharacterized conser 31.5 1E+02 0.0023 34.0 6.0 66 188-255 14-80 (1081)
193 KOG0313 Microtubule binding pr 31.2 4.2E+02 0.0092 27.4 9.9 80 12-114 297-377 (423)
194 KOG0268 Sof1-like rRNA process 30.8 4.3E+02 0.0093 27.3 9.8 86 207-302 252-345 (433)
195 KOG1332 Vesicle coat complex C 29.8 4.8E+02 0.01 25.6 9.5 112 237-375 20-135 (299)
196 COG3386 Gluconolactonase [Carb 29.7 4.8E+02 0.01 26.0 10.2 116 182-302 61-193 (307)
197 KOG1332 Vesicle coat complex C 29.6 3.4E+02 0.0073 26.6 8.5 109 194-304 20-136 (299)
198 KOG0649 WD40 repeat protein [G 29.6 2.4E+02 0.0053 27.6 7.6 118 231-371 13-141 (325)
199 PHA02790 Kelch-like protein; P 29.1 4.8E+02 0.01 27.5 10.7 77 206-290 376-453 (480)
200 PF04053 Coatomer_WDAD: Coatom 29.1 7E+02 0.015 26.2 15.6 160 10-259 103-263 (443)
201 PHA02790 Kelch-like protein; P 28.8 4.5E+02 0.0097 27.7 10.4 81 207-290 332-414 (480)
202 KOG0645 WD40 repeat protein [G 28.7 5.9E+02 0.013 25.3 12.5 86 175-260 50-137 (312)
203 PF05694 SBP56: 56kDa selenium 28.0 7.5E+02 0.016 26.2 12.0 117 204-330 220-362 (461)
204 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.0 2.7E+02 0.0059 29.9 8.7 78 20-113 238-333 (527)
205 KOG1538 Uncharacterized conser 27.5 9.2E+02 0.02 27.1 20.2 142 196-374 143-293 (1081)
206 PF03022 MRJP: Major royal jel 27.2 3.3E+02 0.0072 26.7 8.5 62 230-300 187-253 (287)
207 COG3386 Gluconolactonase [Carb 27.1 4E+02 0.0087 26.5 9.1 91 17-113 164-298 (307)
208 PF08309 LVIVD: LVIVD repeat; 26.7 1.7E+02 0.0037 20.2 4.5 26 232-257 3-28 (42)
209 PF15232 DUF4585: Domain of un 26.6 1.4E+02 0.003 23.5 4.4 41 14-58 3-43 (75)
210 KOG1963 WD40 repeat protein [G 26.3 1E+03 0.022 27.1 15.6 41 174-215 498-539 (792)
211 TIGR03032 conserved hypothetic 26.2 2.5E+02 0.0054 28.4 7.3 58 13-72 240-311 (335)
212 PF04053 Coatomer_WDAD: Coatom 26.1 7.9E+02 0.017 25.9 20.8 64 188-260 110-175 (443)
213 KOG3914 WD repeat protein WDR4 25.7 2.1E+02 0.0045 29.5 6.8 65 239-303 73-138 (390)
214 KOG0308 Conserved WD40 repeat- 25.2 6.3E+02 0.014 28.1 10.4 115 185-303 116-244 (735)
215 PRK01742 tolB translocation pr 25.0 7.1E+02 0.015 25.6 11.0 111 187-302 204-322 (429)
216 PF08450 SGL: SMP-30/Gluconola 25.0 5.6E+02 0.012 23.7 24.7 91 189-282 136-233 (246)
217 KOG1446 Histone H3 (Lys4) meth 24.8 7.2E+02 0.016 25.0 23.8 109 187-300 101-215 (311)
218 KOG2111 Uncharacterized conser 24.7 7.4E+02 0.016 25.1 19.7 46 179-226 87-132 (346)
219 PF14761 HPS3_N: Hermansky-Pud 24.6 1.8E+02 0.004 27.6 5.8 52 191-245 22-76 (215)
220 KOG0293 WD40 repeat-containing 24.5 4.6E+02 0.01 27.5 8.9 110 194-305 233-345 (519)
221 KOG0643 Translation initiation 24.0 7.2E+02 0.016 24.7 14.1 156 187-374 11-177 (327)
222 KOG0303 Actin-binding protein 23.7 8.6E+02 0.019 25.5 11.9 101 186-300 81-201 (472)
223 PF08662 eIF2A: Eukaryotic tra 23.0 5.8E+02 0.012 23.2 15.9 97 185-291 58-162 (194)
224 KOG1963 WD40 repeat protein [G 22.9 1.2E+03 0.025 26.7 15.2 39 187-225 252-292 (792)
225 KOG0281 Beta-TrCP (transducin 22.5 2.5E+02 0.0055 28.7 6.5 106 186-300 237-346 (499)
226 PRK02889 tolB translocation pr 21.8 8.7E+02 0.019 24.9 10.9 111 187-302 196-314 (427)
227 TIGR03548 mutarot_permut cycli 21.7 7.5E+02 0.016 24.1 15.3 75 192-270 119-204 (323)
228 KOG1445 Tumor-specific antigen 21.3 8.4E+02 0.018 27.2 10.4 104 193-300 88-198 (1012)
229 PF09826 Beta_propel: Beta pro 21.1 1E+03 0.023 25.5 17.1 42 44-90 31-75 (521)
230 PF06739 SBBP: Beta-propeller 20.9 79 0.0017 21.2 1.9 16 286-301 16-31 (38)
231 KOG4499 Ca2+-binding protein R 20.8 5.7E+02 0.012 25.0 8.2 43 43-89 232-276 (310)
232 KOG0292 Vesicle coat complex C 20.6 1E+03 0.022 27.7 11.1 105 183-301 48-164 (1202)
No 1
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-63 Score=524.08 Aligned_cols=331 Identities=23% Similarity=0.340 Sum_probs=306.7
Q ss_pred CCcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC-------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEE
Q 014962 1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN-------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL 73 (415)
Q Consensus 1 ~~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~-------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~ 73 (415)
|+++||+|+|+|||+++||||+|++.+.+|+|.+.+... +.|.++++++|++||++++.++|+++|.+.|+.+
T Consensus 700 id~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 700 IDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred ecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 689999999999999999999999998999999865432 4678999999999999999999999999999999
Q ss_pred EEECCe--eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccc
Q 014962 74 VRVGHE--QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLS 151 (415)
Q Consensus 74 ~~l~~~--~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (415)
++|.++ .|++|||++.+ |+|++|..|||++|++.+
T Consensus 780 ~~~~~d~~t~~vVGT~~v~------Pde~ep~~GRIivfe~~e------------------------------------- 816 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGTGLVY------PDENEPVNGRIIVFEFEE------------------------------------- 816 (1096)
T ss_pred eeecCCCceEEEEEEEeec------cCCCCcccceEEEEEEec-------------------------------------
Confidence 999875 79999999988 899999999999999993
Q ss_pred cCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccce
Q 014962 152 SSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRF 231 (415)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~ 231 (415)
..+|+++|++.++|+|++|+.|+|| ||||+|+.|.+|+|.. .++|+.++....+.
T Consensus 817 ----------------------~~~L~~v~e~~v~Gav~aL~~fngk-llA~In~~vrLye~t~--~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 817 ----------------------LNSLELVAETVVKGAVYALVEFNGK-LLAGINQSVRLYEWTT--ERELRIECNISNPI 871 (1096)
T ss_pred ----------------------CCceeeeeeeeeccceeehhhhCCe-EEEecCcEEEEEEccc--cceehhhhcccCCe
Confidence 1389999999999999999999999 9999999999999997 36899999999999
Q ss_pred EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCC
Q 014962 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASP 311 (415)
Q Consensus 232 ~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~ 311 (415)
++..|++.+|+|+|||+|+|++++.|+.+++.|+++|||+.|+|+++++++|+++++++|++||+|++++|.++.+. ++
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td-~e 950 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTD-EE 950 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCch-hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999765543 34
Q ss_pred CCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEecChHHHHHHHHHHHHHhc
Q 014962 312 ECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAI 391 (415)
Q Consensus 312 ~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl~~~~~~~L~~LQ~~l~~ 391 (415)
+++|+..+.||+||.|++|+.|++++..+++.. ...|+++|||.+|+||+|+.++++.+.||..||++|++
T Consensus 951 R~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~---------~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk 1021 (1096)
T KOG1897|consen 951 RQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI---------PLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRK 1021 (1096)
T ss_pred hhcccceeeEEeccceeeeeecceEeecccccc---------CCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHH
Confidence 589999999999999999999999976443333 24577999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccceec
Q 014962 392 HPLTAPLLGNDHSEFRSREN 411 (415)
Q Consensus 392 ~~~~~~~~gl~h~~~Rs~~~ 411 (415)
.++++||++|.+||++++
T Consensus 1022 --~i~s~gglsH~~yrsf~~ 1039 (1096)
T KOG1897|consen 1022 --VIKSVGGLSHMDYRSFEF 1039 (1096)
T ss_pred --hhcccCCcchhhHhhhhc
Confidence 999999999999999999
No 2
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=4.4e-57 Score=484.50 Aligned_cols=336 Identities=21% Similarity=0.281 Sum_probs=295.4
Q ss_pred CCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC----------------------CcceeeEEEEeCCCCcEEEEEe
Q 014962 4 NKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN----------------------DTCSSDICCVDPLSGSVLSSFK 61 (415)
Q Consensus 4 ~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~----------------------~~~~s~i~l~d~~t~~~i~s~~ 61 (415)
-++||+++|||+.|||.++||++.++|+|+++.+.. ....+.|+|++|.+|++++.++
T Consensus 942 dn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~ie 1021 (1366)
T KOG1896|consen 942 DNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIE 1021 (1366)
T ss_pred CCCCcccccccccchhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccc
Confidence 478999999999999999999999999999865432 1346899999999999999999
Q ss_pred CCCCCeEEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCc
Q 014962 62 LELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQ 134 (415)
Q Consensus 62 l~~~E~~~si~~~~l~-------~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~ 134 (415)
|+++|++++|+.+.|. .++||+|||++.+ |||.+++||+++|+|.
T Consensus 1022 fq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~-------gEDv~~RGr~hi~diI--------------------- 1073 (1366)
T KOG1896|consen 1022 FQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQ-------GEDVPARGRIHIFDII--------------------- 1073 (1366)
T ss_pred cCccceeeEEEEEEEEecccccCCcceEEEEEeecc-------cccccCcccEEEEEEE---------------------
Confidence 9999999999999995 2599999999994 9999999999999999
Q ss_pred cCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeC
Q 014962 135 RTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFP 214 (415)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~ 214 (415)
||| |. +|++.+ +.|||.+++++++|+|.++|.++|+ |+.+.|+||++|+|+
T Consensus 1074 ------eVV---------------Pe----pgkP~t---~~KlKel~~eE~KGtVsavceV~G~-l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1074 ------EVV---------------PE----PGKPFT---KNKLKELYIEEQKGTVSAVCEVRGH-LLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ------Eec---------------CC----CCCCcc---cceeeeeehhhcccceEEEEEeccE-EEEccCcEEEEEEec
Confidence 466 33 345443 4799999999999999999999999 999999999999997
Q ss_pred CCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeC
Q 014962 215 NDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSD 291 (415)
Q Consensus 215 ~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD 291 (415)
+++ .|..+||+|++.|++++.+.||+|++||+|+|++|++|++++.+|++++||..++.|++++||.++ .|+++|
T Consensus 1125 r~~--~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1125 RDS--ELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred cCC--cceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 754 488889999999999999999999999999999999999999999999999999999999998654 799999
Q ss_pred CCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEE--EEeCCcceE
Q 014962 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII--ASTLLGSIV 369 (415)
Q Consensus 292 ~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il--y~T~~GsIG 369 (415)
+++||+++.|.|+..++-++ +||.++++||+|..|++|.+-... ...+.. ..++..+ |||++|++|
T Consensus 1203 a~rNi~vy~Y~Pe~~eS~~G-~RLv~radfhvg~~vs~m~~lp~~---~~~e~~--------~~~~~~~~v~gtlDG~l~ 1270 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPENIESLSG-QRLVRRADFHVGAHVSTMFRLPCH---QNAEFG--------SNSPMFYEVFGTLDGGLG 1270 (1366)
T ss_pred CCCcEEEEEeCCCCccccCc-ceeeeeeeeEeccceeeeEecccc---ccchhc--------cCCchhhhhhcccCCcee
Confidence 99999999999977766665 699999999999999999654311 111111 1234444 899999999
Q ss_pred EEEecChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962 370 IFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412 (415)
Q Consensus 370 ~l~pl~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p 412 (415)
.++||+|+.|++|..||++|.+ .++++|||||++||-...+
T Consensus 1271 ~~~Pl~e~~YRRL~~lQn~L~~--~~~hv~GLNPr~yR~~~s~ 1311 (1366)
T KOG1896|consen 1271 HLVPLDEKTYRRLLMLQNALMD--RLPHVGGLNPRAYRLLDSS 1311 (1366)
T ss_pred EEecCCHHHHHHHHHHHHHHHH--hhhhhcCCCHHHhhhccch
Confidence 9999999999999999999999 8899999999999987654
No 3
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=3.1e-55 Score=435.57 Aligned_cols=293 Identities=32% Similarity=0.496 Sum_probs=239.3
Q ss_pred eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-----eeEEEEeeecCCCCCCCCCCCccccc-cEEEEEEEEecc
Q 014962 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-----EQVLVVGTSLSSGPAIMPSGEAESTK-GRLIVLCIEHMQ 116 (415)
Q Consensus 43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-----~~~lvVGT~~~~~~~~~~~~e~~~~~-Gri~vf~i~~~~ 116 (415)
+|+|+|+|+.+|+++++|+|+++|.++|++.++|.+ .+||||||++.. +|+..++ |||++|++.+.
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~-------~~~~~~~~Gri~v~~i~~~- 72 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNY-------GEDPEPSSGRILVFEISES- 72 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE---------TTSSS-S-EEEEEEEECSS-
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccc-------cccccccCcEEEEEEEEcc-
Confidence 479999999999999999999999999999999985 699999999985 4555444 99999999930
Q ss_pred cCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeC
Q 014962 117 NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL 196 (415)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~ 196 (415)
| ...++|+++++++++|+|++|+.++
T Consensus 73 ------------------------------------------~------------~~~~~l~~i~~~~~~g~V~ai~~~~ 98 (321)
T PF03178_consen 73 ------------------------------------------P------------ENNFKLKLIHSTEVKGPVTAICSFN 98 (321)
T ss_dssp -----------------------------------------------------------EEEEEEEEEESS-EEEEEEET
T ss_pred ------------------------------------------c------------ccceEEEEEEEEeecCcceEhhhhC
Confidence 1 1136999999999999999999999
Q ss_pred CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCccee
Q 014962 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLV 276 (415)
Q Consensus 197 g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~v 276 (415)
|+ |++|+|++|++|+|+.+ +.|.+.|+++.++++++|.+.+|+|+|||+++|+++++|+++..+|.++|||+.++|+
T Consensus 99 ~~-lv~~~g~~l~v~~l~~~--~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 99 GR-LVVAVGNKLYVYDLDNS--KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWV 175 (321)
T ss_dssp TE-EEEEETTEEEEEEEETT--SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred CE-EEEeecCEEEEEEccCc--ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccE
Confidence 99 99999999999999984 3377779999999999999999999999999999999999988899999999999999
Q ss_pred EEEEee-eCCeEEEeCCCCcEEEEecCCCcCCCCCCCC-ccceeeeeecCccccEEEeeceeccCCCCCccccccccCCC
Q 014962 277 ADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPEC-NLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFES 354 (415)
Q Consensus 277 ta~~~L-d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~-kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~ 354 (415)
++++|| |++.++++|++|||++|++++...++.+ .+ +|+..++||+|+.||+|+++++.+. ...... .
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~-~~~~L~~~~~f~lg~~v~~~~~~~l~~~-~~~~~~--------~ 245 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRD-GDPKLERISSFHLGDIVNSFRRGSLIPR-SGSSES--------P 245 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTT-TTTBEEEEEEEE-SS-EEEEEE--SS---SSSS-T--------T
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCccccc-ccccceeEEEEECCCccceEEEEEeeec-CCCCcc--------c
Confidence 999999 7789999999999999999876554333 34 8999999999999999999998632 111110 1
Q ss_pred CCceEEEEeCCcceEEEEe-cChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962 355 SQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412 (415)
Q Consensus 355 ~~~~ily~T~~GsIG~l~p-l~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p 412 (415)
..+.++|+|++|+||.|+| +++++|++|+.||++|++ .+++++|++|++||++++|
T Consensus 246 ~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~--~~~~~~gl~~~~~R~~~~~ 302 (321)
T PF03178_consen 246 NRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRK--HIPSLGGLNPRSFRSYKNP 302 (321)
T ss_dssp EEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHH--HS--TTS--HHHHTSEEES
T ss_pred ccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHh--hCCCCccCChHHhccccCc
Confidence 2578999999999999999 799999999999999999 8899999999999999998
No 4
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=3.6e-55 Score=465.07 Aligned_cols=327 Identities=30% Similarity=0.442 Sum_probs=296.8
Q ss_pred CceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC---------------------------------------------
Q 014962 5 KRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN--------------------------------------------- 39 (415)
Q Consensus 5 ~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~--------------------------------------------- 39 (415)
..++...+||++||||+++||+++++++++++++.
T Consensus 763 ~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~ 842 (1205)
T KOG1898|consen 763 KVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVY 842 (1205)
T ss_pred ccccccccccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccc
Confidence 55899999999999999999999999999998753
Q ss_pred ------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC---eeEEEEeeecCCCCCCCCCCCccccccEEEEE
Q 014962 40 ------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH---EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVL 110 (415)
Q Consensus 40 ------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~---~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf 110 (415)
..|.|+|+++|+.++.++..+++..||...|++.+.|.+ .++++||++.+. .+.+.. -+.|++|+|
T Consensus 843 ~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~--~l~~~~---~~~g~~yty 917 (1205)
T KOG1898|consen 843 GSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTE--QLDSKS---ISSGFVYTY 917 (1205)
T ss_pred cCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccc--cccccc---cCCCceEEE
Confidence 138899999999999999999999999999999999974 369999999876 233322 378999999
Q ss_pred EEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceE
Q 014962 111 CIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVL 190 (415)
Q Consensus 111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~ 190 (415)
++.. + +.+|+|+|+++++|+|.
T Consensus 918 k~~~---------------------------------------------~-------------g~~lellh~T~~~~~v~ 939 (1205)
T KOG1898|consen 918 KFVR---------------------------------------------N-------------GDKLELLHKTEIPGPVG 939 (1205)
T ss_pred EEEe---------------------------------------------c-------------CceeeeeeccCCCccce
Confidence 9994 1 23899999999999999
Q ss_pred EEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecC
Q 014962 191 AICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD 270 (415)
Q Consensus 191 al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD 270 (415)
|||+|.|+ +|+|+|+.+++|++++ +++||++.+-.++.+|++|++.+.+|+|||+++||.|++|+++.|+|+.+|+|
T Consensus 940 Ai~~f~~~-~LagvG~~l~~YdlG~--K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGR-VLAGVGRFLRLYDLGK--KKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCE-EEEecccEEEEeeCCh--HHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 99999998 9999999999999998 57899977777799999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCC--CCC---------------CCccceeeeeecCccccEEEee
Q 014962 271 PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDN--ASP---------------ECNLTPNCAYHMGEIAVSIRKG 333 (415)
Q Consensus 271 ~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~--~~~---------------~~kL~~~~~fhlGd~Vt~~~~g 333 (415)
+.|||||++.+||++++++||++||++++|.|++.++. ++| .+|.+.+.+||+||.++++++.
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v~Dvits~q~~ 1096 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFFVGDVITSLQKV 1096 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhccccCeeeeceee
Confidence 99999999999999999999999999999999976642 222 1689999999999999999988
Q ss_pred ceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEec-ChHHHHHHHHHHHHHhcCCCCCCCCCCCcccccceecC
Q 014962 334 SFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI-SSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412 (415)
Q Consensus 334 sl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl-~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~~p 412 (415)
++. +++++.++|+|+.|+||+++|+ ++++++||+.+|++|+. +.+|++|+||.+|||||+|
T Consensus 1097 ~~i----------------~~a~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~--e~ppl~GrDH~~yRsyy~P 1158 (1205)
T KOG1898|consen 1097 SSI----------------PGARESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRK--EYPPLLGRDHLEYRSYYAP 1158 (1205)
T ss_pred eec----------------cCCcceeeeeeccccceEEeecccccchHHHHHHHHhccc--cCCcccCcchhhhhhhccc
Confidence 873 4778999999999999999999 78899999999999999 9999999999999999999
Q ss_pred CCC
Q 014962 413 VRK 415 (415)
Q Consensus 413 ~~~ 415 (415)
|||
T Consensus 1159 vk~ 1161 (1205)
T KOG1898|consen 1159 VKK 1161 (1205)
T ss_pred hhh
Confidence 996
No 5
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=3.9e-45 Score=381.12 Aligned_cols=335 Identities=18% Similarity=0.265 Sum_probs=293.8
Q ss_pred CCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCC---------------------CcceeeEEEEeCCCCcEEEEEeC
Q 014962 4 NKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN---------------------DTCSSDICCVDPLSGSVLSSFKL 62 (415)
Q Consensus 4 ~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~---------------------~~~~s~i~l~d~~t~~~i~s~~l 62 (415)
.+||+++++|++.|-.+|+||+..++|+|...+..+ .-.++.|-|++|.+|++|++|+|
T Consensus 897 gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f~~~gEdgE~~i~~D~Nvphaeg~~~~vdL~spksw~vID~yef 976 (1319)
T COG5161 897 GNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGFSPKGEDGESGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYEF 976 (1319)
T ss_pred cccCceeeccccccccceeeeccceEEEEEeeeecCccccCCCCCccCccCCCCcccccceeeEEEecCcceeEeeeeec
Confidence 589999999999999999999999999999766532 12579999999999999999999
Q ss_pred CCCCeEEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCcc
Q 014962 63 ELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQR 135 (415)
Q Consensus 63 ~~~E~~~si~~~~l~-------~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~ 135 (415)
++||.+.+|+.+.+. +.||++|||++. .|||.|.+||+++|+|.+
T Consensus 977 ~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~-------~gED~p~rG~~hv~eII~--------------------- 1028 (1319)
T COG5161 977 DENEYVFHIKYLILDDMQGTKGKSPYILVGTTFI-------EGEDRPARGRLHVLEIIS--------------------- 1028 (1319)
T ss_pred ccceeeeeeeeeeeeccccccCCCceEEEEeeec-------ccCccCCcCceEEEEEEE---------------------
Confidence 999999999999986 259999999998 699999999999999994
Q ss_pred CCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCC
Q 014962 136 TSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPN 215 (415)
Q Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~ 215 (415)
|| ++| |++ ++ +.|||++..++++|.|..+|.+.|+ ++.+.|+||+|+++++
T Consensus 1029 ------VV-------------P~p------g~P-~t--~~KLK~~~~Ee~kGTV~~vcEV~G~-~~~~qgqKV~Vr~i~~ 1079 (1319)
T COG5161 1029 ------VV-------------PSP------GSP-FT--DCKLKVLGIEETKGTVVRVCEVRGK-IALCQGQKVMVRKIDR 1079 (1319)
T ss_pred ------ec-------------CCC------CCC-cc--cceeeEEehhhcccEEEEEEEEccE-EEeccCcEEEEEEecc
Confidence 55 222 332 33 5799999999999999999999999 9999999999999998
Q ss_pred CCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeCC
Q 014962 216 DNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDR 292 (415)
Q Consensus 216 ~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD~ 292 (415)
++ -+..++|+|.+.+++++++.+|++++||+|++++|+.|++++..++.+++....+.+++.+||..+ .|+++|+
T Consensus 1080 ~~--~iipV~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da 1157 (1319)
T COG5161 1080 SS--GIIPVGFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDA 1157 (1319)
T ss_pred cC--CcceeEEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcC
Confidence 65 377789999999999999999999999999999999999999999999999999999999999653 7999999
Q ss_pred CCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEE
Q 014962 293 KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFI 372 (415)
Q Consensus 293 ~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~ 372 (415)
.|||+++.|.|+.+++-++ +||+.++.||+|...++|.-. |.++.-+.. .+..-+-+|+-++|++-.++
T Consensus 1158 ~gnih~l~Y~P~np~S~sG-~RLV~rssFtlhs~~~~m~ll------Prn~efG~~----~~~~f~~v~~~sdG~l~~vv 1226 (1319)
T COG5161 1158 KGNIHGLTYSPNNPISMSG-ARLVKRSSFTLHSAEIKMNLL------PRNSEFGAG----FKKNFIMVYSRSDGMLIHVV 1226 (1319)
T ss_pred CCCEEEEecCCCCccccCc-ceeEeeccccccchhhhhhhc------cchhhhCCC----CCCceeEEEEccCCcEEEEe
Confidence 9999999999977766666 699999999999999998422 322222110 02245788999999999999
Q ss_pred ecChHHHHHHHHHHHHHhcCCCCCCCCCCCccccccee
Q 014962 373 PISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRE 410 (415)
Q Consensus 373 pl~~~~~~~L~~LQ~~l~~~~~~~~~~gl~h~~~Rs~~ 410 (415)
||+++.|++|.-+|+++.+ .+.+++|+||++||-..
T Consensus 1227 pisd~~YrrL~~IQ~~i~~--r~~~vgGLNpr~yRL~~ 1262 (1319)
T COG5161 1227 PISDAHYRRLLGIQTAIMA--RLKSVGGLNPRDYRLNS 1262 (1319)
T ss_pred ccCHHHHHHHHHHHHHHHH--HHHhhcCCChhhhhhcc
Confidence 9999999999999999999 78999999999999643
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.23 E-value=0.00021 Score=73.93 Aligned_cols=199 Identities=17% Similarity=0.209 Sum_probs=135.4
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~ 91 (415)
++|+.+|+-++..++..+.+|+|.. .|.|+...+.-..-.+.|+ ..|+++ -.+..+++||--
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~--------~iv~l~~~~~~~~~~~~y~----~s~vAv--~~~~~~vaVGG~---- 463 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACIS--------DIVLLQDQTKVSSIPIGYE----SSAVAV--SPDGSEVAVGGQ---- 463 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecC--------cEEEEecCCcceeeccccc----cceEEE--cCCCCEEEEecc----
Confidence 6899999999999998888888744 3777776543322222322 222222 235689999922
Q ss_pred CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (415)
Q Consensus 92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (415)
-|.+++|.+.- + .
T Consensus 464 ------------Dgkvhvysl~g----------------------------------------------~-----~---- 476 (603)
T KOG0318|consen 464 ------------DGKVHVYSLSG----------------------------------------------D-----E---- 476 (603)
T ss_pred ------------cceEEEEEecC----------------------------------------------C-----c----
Confidence 36799999982 0 0
Q ss_pred cccceEEEEEEEecCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecC
Q 014962 172 TETWQLRLAYSTTWPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR 249 (415)
Q Consensus 172 ~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~ 249 (415)
..+-....+.+|++++|.-- .|.||+++ ...++.+|+...... .....+|+...+..++-.....++.-|-+-
T Consensus 477 ----l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 477 ----LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred ----ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence 11123336778999999844 46777776 677799999986322 233334444333333334455577778888
Q ss_pred CcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
..|.++..+.-... .++++.++..|+.+.+||+.+++.+-.+-||-+...+
T Consensus 552 t~Viiysv~kP~~~--i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 552 TNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceEEEEEccChhhh--eEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 99988877654443 8889999999999999999999999999998877643
No 7
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.014 Score=57.98 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=133.6
Q ss_pred eEEEEeCCC--ccCEEEEec-------CCCEEEEEEEeeCCC--cce-eeEEEEeCCCC-------cEEEEEeCCCCCeE
Q 014962 8 NVRKFHLGG--TPKKVLYHS-------ESRLLIVMRTELNND--TCS-SDICCVDPLSG-------SVLSSFKLELGETG 68 (415)
Q Consensus 8 ~i~~i~L~~--tp~~I~y~~-------~~~~~~v~~~~~~~~--~~~-s~i~l~d~~t~-------~~i~s~~l~~~E~~ 68 (415)
.+.+++|.. .+..++... ....++|++.....+ ... +.|.+++-... +.+++.++ ...|
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V 91 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPV 91 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-E
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcc
Confidence 444555543 555444432 234566666554332 233 78888887662 35555555 4568
Q ss_pred EEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeeccccc
Q 014962 69 KSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATE 148 (415)
Q Consensus 69 ~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 148 (415)
.+++.+ + .++++|.. ++|++|++..
T Consensus 92 ~ai~~~---~-~~lv~~~g-----------------~~l~v~~l~~---------------------------------- 116 (321)
T PF03178_consen 92 TAICSF---N-GRLVVAVG-----------------NKLYVYDLDN---------------------------------- 116 (321)
T ss_dssp EEEEEE---T-TEEEEEET-----------------TEEEEEEEET----------------------------------
T ss_pred eEhhhh---C-CEEEEeec-----------------CEEEEEEccC----------------------------------
Confidence 877776 3 33776643 5899999993
Q ss_pred ccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeee
Q 014962 149 QLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVG 227 (415)
Q Consensus 149 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~ 227 (415)
+ .+|......+..-.|.+|..++++ +++| +-..+.++.|+.++ +.|...|--
T Consensus 117 -----------~--------------~~l~~~~~~~~~~~i~sl~~~~~~-I~vgD~~~sv~~~~~~~~~-~~l~~va~d 169 (321)
T PF03178_consen 117 -----------S--------------KTLLKKAFYDSPFYITSLSVFKNY-ILVGDAMKSVSLLRYDEEN-NKLILVARD 169 (321)
T ss_dssp -----------T--------------SSEEEEEEE-BSSSEEEEEEETTE-EEEEESSSSEEEEEEETTT-E-EEEEEEE
T ss_pred -----------c--------------ccchhhheecceEEEEEEeccccE-EEEEEcccCEEEEEEEccC-CEEEEEEec
Confidence 1 147778888888899999999887 8877 45669999988643 346665654
Q ss_pred ccceEEEEEEEe--CCEEEEeecCCcEEEEEEEccC------C-eEEEEecCCCcceeEEE---Eeee---C-C-----e
Q 014962 228 RTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHEDA------R-KLEQIYCDPSQRLVADC---VLMD---V-D-----T 286 (415)
Q Consensus 228 ~~~~~i~sI~~~--~n~IlVGD~~~Sv~ll~y~~~~------~-~L~~varD~~~~~vta~---~~Ld---~-d-----~ 286 (415)
..+..++++... ++.++++|....+++++|+++. . +|..++.=.....+++. .+.. . + .
T Consensus 170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (321)
T PF03178_consen 170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQ 249 (321)
T ss_dssp SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccce
Confidence 456677787765 4599999999999999998642 2 78888877677777777 3332 1 2 2
Q ss_pred EEEeCCCCcEEEEe
Q 014962 287 AVVSDRKGSIAVLS 300 (415)
Q Consensus 287 ~l~aD~~gNl~vl~ 300 (415)
++.+-.+|.|.++.
T Consensus 250 i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 250 ILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEETTS-EEEEE
T ss_pred EEEEecCCEEEEEE
Confidence 88899999999665
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.64 E-value=0.048 Score=49.87 Aligned_cols=111 Identities=8% Similarity=0.023 Sum_probs=66.0
Q ss_pred cCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEcc
Q 014962 185 WPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 185 ~~g~V~al~~~~-g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
..+++.+++-.. +.+|+++. .+.+.+|++... +.+....... ..+.++.. .++.++++..-..+.++..+
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-- 207 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--KCVATLTGHT--GEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-- 207 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--ccceeEecCc--cccceEEECCCcCEEEEecCCCcEEEEECC--
Confidence 456788887555 56355555 778999999742 2233322222 24555554 44588888876677665543
Q ss_pred CCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962 261 ARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~ 302 (415)
..+....-. .....+.++.+..++ .+++++.+|.|.++...
T Consensus 208 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 208 TGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 333322221 233477777776544 56666669999999864
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.15 E-value=0.24 Score=48.97 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCceEEEEe--CCeEEEEeeCCCCccceeeeeeec-------cceEE--EEEEEeCCEEEEeec-CCcEEEEEEEccCCe
Q 014962 196 LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGR-------TRFMI--MLLTAHFTRIAVGDC-RDGILFYSYHEDARK 263 (415)
Q Consensus 196 ~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~-------~~~~i--~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~ 263 (415)
.|++|.++- .++|.+|++.... ..++...... .+.+. ..+...+.++++++. ..++.++.++++...
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 456565553 6889999997421 1222211111 11122 334467789999985 578999999877666
Q ss_pred EEEEecCCCcceeEEEEee-eCCeEEEeCC-CCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEe
Q 014962 264 LEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK 332 (415)
Q Consensus 264 L~~varD~~~~~vta~~~L-d~d~~l~aD~-~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~ 332 (415)
+..++.-....+...+.+- |...++++.. ++.|.+++.+.. + ..|.....+..|..++++..
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~-----~--g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE-----T--GLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC-----C--CcEEEccccccCCCceEEEE
Confidence 6666654332233334443 3346666665 778999987641 1 24767778888888888764
No 10
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.99 E-value=0.25 Score=55.39 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=69.2
Q ss_pred cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCC----ccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 185 WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDN----PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 185 ~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~----~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
..++|.++.-..+.+|+++ ..+.|.+|++.... .+.++...-+......+.+...+++|++|..-..+.++....
T Consensus 660 h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 660 HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 3467777776667645554 34568999986421 122333222233334455666788999999888887765332
Q ss_pred cCCeEEE----------EecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962 260 DARKLEQ----------IYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 260 ~~~~L~~----------varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~ 301 (415)
....+.. +.-+....+|.++.+-. ...++++..+|+|.++++
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1111110 11122344677777743 348899999999999874
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.97 E-value=0.28 Score=44.70 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=109.4
Q ss_pred ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 014962 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~~ 95 (415)
....+.++|+.+.++++.. ...++++|..+.+.+..+.... ..+ ..+.+. +..++++|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~-~~i---~~~~~~~~~~~l~~~~~-------- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-------DGTIKVWDLETGELLRTLKGHT-GPV---RDVAASADGTYLASGSS-------- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-------CcEEEEEEeeCCCcEEEEecCC-cce---eEEEECCCCCEEEEEcC--------
Confidence 5567888998887777653 2468888887776555444322 222 223332 3457777643
Q ss_pred CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (415)
Q Consensus 96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (415)
.|.|.+|++... .
T Consensus 72 --------~~~i~i~~~~~~-----------------------------------------------------------~ 84 (289)
T cd00200 72 --------DKTIRLWDLETG-----------------------------------------------------------E 84 (289)
T ss_pred --------CCeEEEEEcCcc-----------------------------------------------------------c
Confidence 578889988720 0
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCc
Q 014962 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG 251 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~-g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~S 251 (415)
.+..+ ...++++.+++-.. +++++++. .+.+.+|++... +.+.....+ .-.+..+.. .+.++++|+.-..
T Consensus 85 ~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 85 CVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred ceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCc
Confidence 11111 13345677777554 35344444 577999999741 223332222 223444444 4567777775666
Q ss_pred EEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~ 302 (415)
+.++..+ .++....-. .....+.++.+..++ .++.+..+|.+.++...
T Consensus 159 i~i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 159 IKLWDLR--TGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EEEEEcc--ccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 7665543 332222222 233467777776554 77777779999999864
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.90 E-value=0.14 Score=49.23 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=61.8
Q ss_pred CceEEEeee-CCceEEEEeCCe--EEEEeeCCCC-ccceeeee-eeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEc
Q 014962 187 GMVLAICPY-LDRYFLASAGNA--FYVCGFPNDN-PQRVRRFA-VGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 187 g~V~al~~~-~g~yLl~~vg~~--l~v~~~~~~~-~~~L~~~a-~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
-+|++++.. .|. .++|++++ +|||++-.+. ...|.... +-...-+|.+.. ..+.+|+..-+-+-+.+++ .
T Consensus 168 ~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn--~ 244 (311)
T KOG0315|consen 168 TSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN--T 244 (311)
T ss_pred cceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe--c
Confidence 456666655 467 67888877 8898886532 11222211 111122455443 3556777777778776554 4
Q ss_pred cCCeEEEEecCCCcceeEEEEeeeCCeEE-EeCCCCcE
Q 014962 260 DARKLEQIYCDPSQRLVADCVLMDVDTAV-VSDRKGSI 296 (415)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~Ld~d~~l-~aD~~gNl 296 (415)
+.--..++--+...||+-.|.|-.++.+| .+..++-.
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCce
Confidence 44422334455577999999997666554 44444433
No 13
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.41 Score=47.18 Aligned_cols=190 Identities=16% Similarity=0.103 Sum_probs=121.0
Q ss_pred CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCC
Q 014962 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (415)
Q Consensus 16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~ 95 (415)
.+..++-|+|.++.++|.+ |-++++|+|-.+++....|.. .- .+..|.|.++.-+++|+.
T Consensus 14 d~IS~v~f~~~~~~LLvss-------WDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~~~~G~~-------- 73 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSS-------WDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADESTIVTGGL-------- 73 (323)
T ss_pred hceeeEEEcCcCCcEEEEe-------ccCcEEEEeccchhhhhheec--CC---ceeeeeccCCceEEEecc--------
Confidence 3557888888877777774 677899999887765443332 22 345667778888888876
Q ss_pred CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (415)
Q Consensus 96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (415)
.|.|..++++. ++
T Consensus 74 --------dg~vr~~Dln~-------------------------------------------~~---------------- 86 (323)
T KOG1036|consen 74 --------DGQVRRYDLNT-------------------------------------------GN---------------- 86 (323)
T ss_pred --------CceEEEEEecC-------------------------------------------Cc----------------
Confidence 57888999882 00
Q ss_pred eEEEEEEEecCCceEEEeee--CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962 176 QLRLAYSTTWPGMVLAICPY--LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI 252 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~--~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv 252 (415)
..+ + -.-.++|.+|+.. .|. +++ +=++++.+|+... + ......+.+=-|.++++.+|+++||..-+.|
T Consensus 87 ~~~-i--gth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~--~---~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 87 EDQ-I--GTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRN--K---VVVGTFDQGKKVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred cee-e--ccCCCceEEEEeeccCCe-EEEcccCccEEEEeccc--c---ccccccccCceEEEEeccCCEEEEeecCceE
Confidence 111 1 2235678888866 666 554 3567789999874 1 1112233333788999999999999999999
Q ss_pred EEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecC
Q 014962 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~ 302 (415)
..+..+.-..-+ ..--..-+..+.++.++. ...++++-.+|-+.+=-.+
T Consensus 158 ~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 158 LIYDLRNLDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred EEEEcccccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 776654322211 111112233455666554 3578888888877643333
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.69 E-value=0.15 Score=55.93 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=103.8
Q ss_pred ceEEEEEEE-ecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccc-eEEEEEEEeCCEEEEeecCCcE
Q 014962 175 WQLRLAYST-TWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR-FMIMLLTAHFTRIAVGDCRDGI 252 (415)
Q Consensus 175 ~~L~l~~~~-~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~-~~i~sI~~~~n~IlVGD~~~Sv 252 (415)
.||.|++.- +++.-|+|++..... ..+|-|+++++|..++. ++ +++..+ --+.-+...|+.++.+|....+
T Consensus 64 ~kl~ll~vs~~lp~~I~alas~~~~-vy~A~g~~i~~~~rgk~----i~--~~~~~~~a~v~~l~~fGe~lia~d~~~~l 136 (910)
T KOG1539|consen 64 NKLNLLFVSKPLPDKITALASDKDY-VYVASGNKIYAYARGKH----IR--HTTLLHGAKVHLLLPFGEHLIAVDISNIL 136 (910)
T ss_pred cceEEEEecCCCCCceEEEEecCce-EEEecCcEEEEEEccce----EE--EEeccccceEEEEeeecceEEEEEccCcE
Confidence 378888754 889999999999887 99999999999999852 22 233322 2678888999999999999999
Q ss_pred EEEEEEcc-CC-eEEEEecCCCcceeEEEEeee-C-CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCcccc
Q 014962 253 LFYSYHED-AR-KLEQIYCDPSQRLVADCVLMD-V-DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAV 328 (415)
Q Consensus 253 ~ll~y~~~-~~-~L~~varD~~~~~vta~~~Ld-~-d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt 328 (415)
.+++...- .. .+...-....-..++++.-.+ + .-++.+-..|++.++.... .+.+..--+|. +.||
T Consensus 137 ~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt--------~K~v~~f~~~~--s~IT 206 (910)
T KOG1539|consen 137 FVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRT--------GKVVYTFQEFF--SRIT 206 (910)
T ss_pred EEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEecc--------CcEEEEecccc--ccee
Confidence 99887652 11 111011111111255544322 1 3467778889988887543 12333333443 8888
Q ss_pred EEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEE
Q 014962 329 SIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIF 371 (415)
Q Consensus 329 ~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l 371 (415)
++.+.. .-..+..|+.+|.|-++
T Consensus 207 ~ieqsP--------------------aLDVVaiG~~~G~Viif 229 (910)
T KOG1539|consen 207 AIEQSP--------------------ALDVVAIGLENGTVIIF 229 (910)
T ss_pred EeccCC--------------------cceEEEEeccCceEEEE
Confidence 875332 23567777777777554
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.49 E-value=0.92 Score=44.83 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=107.7
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEE-----EEEeCCCCCeEEEEEEEEE-CCeeEEEEe
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL-----SSFKLELGETGKSMELVRV-GHEQVLVVG 85 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i-----~s~~l~~~E~~~si~~~~l-~~~~~lvVG 85 (415)
++-...|+.++++|+.+.++|... ....|.++|..+...+ ....++.++.+..+ .| .+..++.|.
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~---~~~pdg~~lyv~ 192 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM---VFHPNQQYAYCV 192 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceE---EECCCCCEEEEE
Confidence 333457888999999888777653 2346888887653322 22344555554433 33 345677665
Q ss_pred eecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCC
Q 014962 86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD 165 (415)
Q Consensus 86 T~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 165 (415)
.. ..+.|.+|++...
T Consensus 193 ~~---------------~~~~v~v~~~~~~-------------------------------------------------- 207 (330)
T PRK11028 193 NE---------------LNSSVDVWQLKDP-------------------------------------------------- 207 (330)
T ss_pred ec---------------CCCEEEEEEEeCC--------------------------------------------------
Confidence 33 2578999999820
Q ss_pred CccccccccceEEEEEEEe-----cCCc--e--EEEeeeCCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccce--E
Q 014962 166 GIKLEETETWQLRLAYSTT-----WPGM--V--LAICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRF--M 232 (415)
Q Consensus 166 g~~~~~~~~~~L~l~~~~~-----~~g~--V--~al~~~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~~--~ 232 (415)
+-+++++.+.. ..++ + .++.+ +|++|.++. .+.|.+|++..++ ..++......+.. .
T Consensus 208 --------~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~-~~~~~~~~~~~~~~p~ 277 (330)
T PRK11028 208 --------HGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDG-SVLSFEGHQPTETQPR 277 (330)
T ss_pred --------CCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCC-CeEEEeEEEeccccCC
Confidence 00222222211 1111 1 12223 567677763 3568999997643 2233323322221 2
Q ss_pred EEEEEEeCCEEEEeec-CCcEEEEEEEccCCeEEEEecCCCcceeEEEEee
Q 014962 233 IMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM 282 (415)
Q Consensus 233 i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L 282 (415)
...+...|.+++|+.. -..+.+++.+.+.+.|..+++=....+..++.||
T Consensus 278 ~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 278 GFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSVL 328 (330)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence 3455567889999886 4579899888877888777654455566666664
No 16
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.3 Score=48.43 Aligned_cols=173 Identities=12% Similarity=0.078 Sum_probs=101.9
Q ss_pred CceEEEeee-CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccCCe
Q 014962 187 GMVLAICPY-LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDARK 263 (415)
Q Consensus 187 g~V~al~~~-~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~~~ 263 (415)
-||++||-- .|+.||. +.-+++.+|++... ..|+...| +.|..-..... ..|..++.=+.+|-.+..|..-..+
T Consensus 66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~ 142 (405)
T KOG1273|consen 66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS 142 (405)
T ss_pred cceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee
Confidence 478888844 4663553 46677999999874 23544333 33444444444 4466777667778888888864444
Q ss_pred EEEEecCCCcceeEEEEeeeCC--eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCC
Q 014962 264 LEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPA 341 (415)
Q Consensus 264 L~~varD~~~~~vta~~~Ld~d--~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~ 341 (415)
+...-.|-....+.++.+.|.. .++.+...|-|.++... .|..++.|.+-. ++.+..--+.
T Consensus 143 ~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-----------t~e~vas~rits-~~~IK~I~~s----- 205 (405)
T KOG1273|consen 143 VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-----------TLECVASFRITS-VQAIKQIIVS----- 205 (405)
T ss_pred eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-----------hheeeeeeeech-heeeeEEEEe-----
Confidence 4444444445556666666653 78899999999988832 356677777755 4444332221
Q ss_pred CCccccccccCCCCCceEEEEeCCcceEE--EEecC----hHHHHHHHHHHHHHhc
Q 014962 342 DDALGDCLASFESSQTTIIASTLLGSIVI--FIPIS----SEEYELLEAVQARLAI 391 (415)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ily~T~~GsIG~--l~pl~----~~~~~~L~~LQ~~l~~ 391 (415)
-.+..+++-|.+-.|-. +-.|. ..+.+..+++|..+.+
T Consensus 206 ------------~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 206 ------------RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred ------------ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 12345666666665532 22221 2245555666665554
No 17
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.97 E-value=1 Score=49.25 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=121.7
Q ss_pred eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEeccc------
Q 014962 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQN------ 117 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~------ 117 (415)
.+|++-+-.|.+.+-+++-. .++|. .-..++.||++||- .|.|.+|++.+...
T Consensus 394 ~SikiWn~~t~kciRTi~~~---y~l~~--~Fvpgd~~Iv~G~k----------------~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCG---YILAS--KFVPGDRYIVLGTK----------------NGELQVFDLASASLVETIRA 452 (888)
T ss_pred CcEEEEEccCcceeEEeccc---cEEEE--EecCCCceEEEecc----------------CCceEEEEeehhhhhhhhhc
Confidence 46888888888888776644 55443 33468899999987 44555555542110
Q ss_pred -----------CCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEe--
Q 014962 118 -----------SDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTT-- 184 (415)
Q Consensus 118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~-- 184 (415)
+|.++ |.-+.+-..++-+.|.=++. | +|. .++.|.+.|...
T Consensus 453 HdgaIWsi~~~pD~~g--~vT~saDktVkfWdf~l~~~---~----------------~gt-----~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKG--FVTGSADKTVKFWDFKLVVS---V----------------PGT-----QKKVLSLKHTRTLE 506 (888)
T ss_pred cccceeeeeecCCCCc--eEEecCCcEEEEEeEEEEec---c----------------Ccc-----cceeeeeccceEEe
Confidence 01111 11112224444454422220 1 222 123466666554
Q ss_pred cCCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeec--cceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962 185 WPGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGR--TRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 185 ~~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~--~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
++.-|.|+..- +|+||+++ .+++|.||-+.. -+. .+..|. .|...+.|....+.|+-|-+-+.|-++..|-.
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--lKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--LKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc--eee--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 56778888744 57877777 788899999974 111 123443 44444555567789999999999999887765
Q ss_pred CCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEE
Q 014962 261 ARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIA 297 (415)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~ 297 (415)
+=+-+.+|-| -.|+++.|+..+ .|..+-++|-+-
T Consensus 583 DCHKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 583 DCHKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred hhhhhhhccc---CceeEEEEcccceeEEEecCcceEE
Confidence 5445556543 368999999876 667777777654
No 18
>PTZ00420 coronin; Provisional
Probab=95.90 E-value=3.3 Score=44.88 Aligned_cols=113 Identities=9% Similarity=0.077 Sum_probs=61.6
Q ss_pred CCceEEEee-eCCceEEEEe--CCeEEEEeeCCCCccceeeeeeeccc--eEEEEE---EEeCCEEEEeecC----CcEE
Q 014962 186 PGMVLAICP-YLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTR--FMIMLL---TAHFTRIAVGDCR----DGIL 253 (415)
Q Consensus 186 ~g~V~al~~-~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~~--~~i~sI---~~~~n~IlVGD~~----~Sv~ 253 (415)
.+.|++++- ..|. +|++. +.+|++|++... +.+.....+... ..+..+ ...+++|+.+..- +.+.
T Consensus 167 ~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 167 PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 467888873 3577 55543 567999999862 334332323222 122222 2345677774432 4577
Q ss_pred EEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeCCCCcEEEEecCC
Q 014962 254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD~~gNl~vl~~~~ 303 (415)
++..+....-+..+.-|.....++. +.|.+ .++++-.+++|+++.+..
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p--~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIP--HYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEE--eeeCCCCCEEEEEECCCeEEEEEccC
Confidence 7665543444444444433222221 22332 577888899999999754
No 19
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.70 E-value=2.8 Score=42.46 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=90.3
Q ss_pred eeEEEEeCCCCcEEEEEeCC-CCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962 44 SDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS 122 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~-~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~ 122 (415)
.+|-+.|-++++++++++.- +|...+|.-+....+ -|++.= +..+.|-+++|+....
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp--------------~s~t~GdV~l~d~~nl------- 163 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYP--------------GSTTSGDVVLFDTINL------- 163 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEec--------------CCCCCceEEEEEcccc-------
Confidence 45889999999999999977 888877765553333 466532 2356899999999941
Q ss_pred ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEe-eeCCceEE
Q 014962 123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAIC-PYLDRYFL 201 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~-~~~g~yLl 201 (415)
+ ....++ --+|++-||+ ...|. ||
T Consensus 164 -----------------------------------~-----------------~v~~I~--aH~~~lAalafs~~G~-ll 188 (391)
T KOG2110|consen 164 -----------------------------------Q-----------------PVNTIN--AHKGPLAALAFSPDGT-LL 188 (391)
T ss_pred -----------------------------------e-----------------eeeEEE--ecCCceeEEEECCCCC-EE
Confidence 1 122232 3467888887 55688 66
Q ss_pred EEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEcc
Q 014962 202 ASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 202 ~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
|.... -++||.... .+++....-.-.+..|.+|.- ...++.+.---+.|.+++.+..
T Consensus 189 ATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 65433 378998865 344433222222445666653 5668888888899999988653
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.62 E-value=0.14 Score=53.09 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=115.0
Q ss_pred eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC--CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCC
Q 014962 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVG--HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCG 121 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~--~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 121 (415)
..|+|.|-.|+.++.+|.+ ++.+.|+ +|. +...+++|++ .|+|+-|++..
T Consensus 280 ~~lKlwDtETG~~~~~f~~--~~~~~cv---kf~pd~~n~fl~G~s----------------d~ki~~wDiRs------- 331 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHL--DKVPTCV---KFHPDNQNIFLVGGS----------------DKKIRQWDIRS------- 331 (503)
T ss_pred eeeeeeccccceEEEEEec--CCCceee---ecCCCCCcEEEEecC----------------CCcEEEEeccc-------
Confidence 4799999999999887665 4555544 443 3478888977 67999999983
Q ss_pred CccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEe-cCCceEEEeeeC-Cce
Q 014962 122 SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTT-WPGMVLAICPYL-DRY 199 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~-~~g~V~al~~~~-g~y 199 (415)
.+||+ +.+ -=|+|..|.=+. |++
T Consensus 332 ------------------~kvvq-------------------------------------eYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 332 ------------------GKVVQ-------------------------------------EYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ------------------hHHHH-------------------------------------HHHhhhhheeeeEEccCCce
Confidence 12332 111 125566666442 454
Q ss_pred EEEEeCC-eEEEEeeCCCCccceeeeeeecc-ceEEEEEEE---------eCCEEEEeecCCcEEEEEEEccCCeEEEEe
Q 014962 200 FLASAGN-AFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTA---------HFTRIAVGDCRDGILFYSYHEDARKLEQIY 268 (415)
Q Consensus 200 Ll~~vg~-~l~v~~~~~~~~~~L~~~a~~~~-~~~i~sI~~---------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va 268 (415)
++.+.-. .+++|+|+..- .++-.+...+ .+..+.+.. .+|+|++=- ...+|+. ++-..+.
T Consensus 357 FissSDdks~riWe~~~~v--~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs-----~~~~~r~--nkkK~fe 427 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPV--PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS-----TVPPFRL--NKKKRFE 427 (503)
T ss_pred EeeeccCccEEEEEcCCCc--cchhhcchhhccCcceecCCCCCeehhhccCceEEEEe-----ccccccc--CHhhhhc
Confidence 6666554 48999998632 1221111111 112333333 345555411 1122221 1112233
Q ss_pred cCCCcceeEEEEe-eeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCcccc
Q 014962 269 CDPSQRLVADCVL-MDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGD 347 (415)
Q Consensus 269 rD~~~~~vta~~~-Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~ 347 (415)
....+..-+.+.| .|.++++.+|.+|+++++.... .+|.....-|- +.++.. . ..|
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---------~kl~~~lkah~-~~ci~v----~--wHP------- 484 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---------TKLVSKLKAHD-QPCIGV----D--WHP------- 484 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechh---------hhhhhccccCC-cceEEE----E--ecC-------
Confidence 3444445566666 4667999999999999999765 35655555552 222222 1 122
Q ss_pred ccccCCCCCceEEEEeCCcceEE
Q 014962 348 CLASFESSQTTIIASTLLGSIVI 370 (415)
Q Consensus 348 ~~~~~~~~~~~ily~T~~GsIG~ 370 (415)
.....++-++.+|.|-+
T Consensus 485 ------~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 485 ------VEPSKVATCGWDGLIKI 501 (503)
T ss_pred ------CCcceeEecccCceeEe
Confidence 22345777778887754
No 21
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.58 E-value=3.6 Score=42.93 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=119.5
Q ss_pred ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-EEEEEEEEECCeeEEEEeeecCCCCCCC
Q 014962 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-GKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-~~si~~~~l~~~~~lvVGT~~~~~~~~~ 95 (415)
..+.+-|+|..++..+.++|.. .+++.|..+..+ .+++...|- +-|. .|.-.++.+++-|.-
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~------v~k~~d~s~a~v--~~~l~~htDYVR~g-~~~~~~~hivvtGsY-------- 174 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDK------VVKYWDLSTAYV--QAELSGHTDYVRCG-DISPANDHIVVTGSY-------- 174 (487)
T ss_pred ceeEEEecccCCeEEEecCCCc------eEEEEEcCCcEE--EEEecCCcceeEee-ccccCCCeEEEecCC--------
Confidence 4567778888888888887763 477777776664 567666654 4443 333345556665522
Q ss_pred CCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccc
Q 014962 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (415)
Q Consensus 96 ~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (415)
-|.|-+|+.... + .+
T Consensus 175 --------Dg~vrl~DtR~~--------------------------------------------------------~-~~ 189 (487)
T KOG0310|consen 175 --------DGKVRLWDTRSL--------------------------------------------------------T-SR 189 (487)
T ss_pred --------CceEEEEEeccC--------------------------------------------------------C-ce
Confidence 467888888830 0 12
Q ss_pred eEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcE
Q 014962 176 QLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGI 252 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~g-~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv 252 (415)
+.+.+-.-||-.|+.+.+ ..++.|-|+.+.||++-..+ +++.....+.. .+++|.. .+.+++-|-+-+=|
T Consensus 190 ----v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~-qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 190 ----VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG-QLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred ----eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-eehhhhhcccc--eEEEEEeecCCceEeecccccce
Confidence 334455567888888876 52445678889999998543 55555343333 4666655 45789999888888
Q ss_pred EEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEe
Q 014962 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS 300 (415)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~ 300 (415)
-++.+. ..+.+ -.=-.|..+.++..-+++ +++.+=.+|-+++-+
T Consensus 263 KVfd~t--~~Kvv--~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 263 KVFDTT--NYKVV--HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEEcc--ceEEE--EeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 776632 33333 222345567777766554 677766677666554
No 22
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.44 E-value=4.2 Score=42.84 Aligned_cols=200 Identities=11% Similarity=0.127 Sum_probs=119.8
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCC
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSS 90 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~ 90 (415)
.-+.+-.+...+||.. .+++.+. ..-.-++|-.+-.++. +.-+ ||.++++ ++. +..|++||+.
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~-------~G~w~V~d~e~~~lv~-~~~d-~~~ls~v---~ysp~G~~lAvgs~--- 467 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTA-------TGRWFVLDTETQDLVT-IHTD-NEQLSVV---RYSPDGAFLAVGSH--- 467 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeec-------cceEEEEecccceeEE-EEec-CCceEEE---EEcCCCCEEEEecC---
Confidence 3445666777788877 6666542 2346678887755555 3444 8887654 443 4589999977
Q ss_pred CCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962 91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE 170 (415)
Q Consensus 91 ~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~ 170 (415)
-+.||+|+++.
T Consensus 468 -------------d~~iyiy~Vs~-------------------------------------------------------- 478 (626)
T KOG2106|consen 468 -------------DNHIYIYRVSA-------------------------------------------------------- 478 (626)
T ss_pred -------------CCeEEEEEECC--------------------------------------------------------
Confidence 35799999993
Q ss_pred ccccceEEEEEEEecCCceEEEe-eeCCceEEEEeCCeEEEEeeCCCCccceee---e--eeec--cce-----------
Q 014962 171 ETETWQLRLAYSTTWPGMVLAIC-PYLDRYFLASAGNAFYVCGFPNDNPQRVRR---F--AVGR--TRF----------- 231 (415)
Q Consensus 171 ~~~~~~L~l~~~~~~~g~V~al~-~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~---~--a~~~--~~~----------- 231 (415)
+++++..+.+..- .+++++. +.++. .+.+....-.+.-|.....+..+. + +.+. ..|
T Consensus 479 --~g~~y~r~~k~~g-s~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i 554 (626)
T KOG2106|consen 479 --NGRKYSRVGKCSG-SPITHLDWSSDSQ-FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDI 554 (626)
T ss_pred --CCcEEEEeeeecC-ceeEEeeecCCCc-eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchH
Confidence 1357777777766 8899888 44566 455544443444443211111111 0 1100 011
Q ss_pred EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEe
Q 014962 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS 300 (415)
Q Consensus 232 ~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~ 300 (415)
.+++-...++.+.+||-.--|.+++|-=..-+-.-.-.-...+.++++.|+-+| .+++.-++-.|+..+
T Consensus 555 ~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 555 NAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred HHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 122233356889999999999999985433222222223457789999999776 556555666666554
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.33 E-value=2.2 Score=46.74 Aligned_cols=193 Identities=13% Similarity=0.208 Sum_probs=120.5
Q ss_pred EEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCC
Q 014962 20 KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGE 99 (415)
Q Consensus 20 ~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e 99 (415)
.++|+|++..++.++.| +.|++-|-.++-++.+|. |+-.++..+.|.....+++..+.
T Consensus 355 ~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSL----------- 412 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAED-------GKVKVWNTQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSL----------- 412 (893)
T ss_pred eEEECCCCcEEEeccCC-------CcEEEEeccCceEEEEec----cCCCceEEEEEEecCCEEEEeec-----------
Confidence 45566665555555433 348888887777776654 44445566666655556666553
Q ss_pred ccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEE
Q 014962 100 AESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRL 179 (415)
Q Consensus 100 ~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l 179 (415)
-|++-.|++.+- -..|++ . .|. ..++
T Consensus 413 ----DGtVRAwDlkRY----------------rNfRTf-----t--------------~P~---------------p~Qf 438 (893)
T KOG0291|consen 413 ----DGTVRAWDLKRY----------------RNFRTF-----T--------------SPE---------------PIQF 438 (893)
T ss_pred ----CCeEEeeeeccc----------------ceeeee-----c--------------CCC---------------ceee
Confidence 478888988841 112222 1 121 1111
Q ss_pred EEEEecCCceEEEeeeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEE
Q 014962 180 AYSTTWPGMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS 256 (415)
Q Consensus 180 ~~~~~~~g~V~al~~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~ 256 (415)
. ..|+. -.|. |++|-++. ++||+++. .++|-..+-+..|..-.++...++.++-|---+-|-++.
T Consensus 439 s--------cvavD-~sGe-lV~AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 439 S--------CVAVD-PSGE-LVCAGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred e--------EEEEc-CCCC-EEEeeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 1 11222 2366 66555554 67888886 477877788888888888999999888888888887765
Q ss_pred EEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962 257 YHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~ 303 (415)
.=...++-+.+. ....++++.|- |.+.++++.-+|+|-++...+
T Consensus 507 if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 507 IFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred eeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 544444444432 23457777775 567999999999999998544
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.29 E-value=6.5 Score=44.15 Aligned_cols=112 Identities=6% Similarity=0.008 Sum_probs=60.8
Q ss_pred CCceEEEee--eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccC
Q 014962 186 PGMVLAICP--YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 186 ~g~V~al~~--~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
.+.|.++.- -.|.+|++| ..+.|++|++.... ..+.....+. ..|.++.. .+++|+.|..-..+.++..+...
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~--~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHS--KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCC--CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence 456666653 246645544 34568999997531 1122212122 23444443 46788888777778777654321
Q ss_pred -----CeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962 262 -----RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 262 -----~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~ 302 (415)
..+..+.. ...++.++.+- +...++++..+|.++++...
T Consensus 694 ~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 694 SGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred cccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 12222222 22334444443 34467778889999998853
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.25 E-value=6.1 Score=43.54 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=87.9
Q ss_pred EEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceee---eeeeccce-EEEEEEEeC--CEEEEeecCCc
Q 014962 179 LAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRR---FAVGRTRF-MIMLLTAHF--TRIAVGDCRDG 251 (415)
Q Consensus 179 l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~---~a~~~~~~-~i~sI~~~~--n~IlVGD~~~S 251 (415)
.+|...++.+|.||+-- +|+.+++++|+-+.+|......+..+-. ...+..++ -|++|+-.. +++++|---.+
T Consensus 89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s 168 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS 168 (893)
T ss_pred eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccce
Confidence 36778899999999944 5675888999999999887521101111 01112222 588887533 46677777778
Q ss_pred EEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~ 302 (415)
+.++..+..++ |...+-..+.-.|.+|.|-.+. .+...-++|-|+++.++
T Consensus 169 ~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 169 ARLFGVDGNKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred EEEEEeccccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 88888877666 7777777788899999987554 78888899999999877
No 26
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.75 E-value=5.4 Score=41.31 Aligned_cols=101 Identities=10% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCceEEEe-eeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeec-cceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962 186 PGMVLAIC-PYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (415)
Q Consensus 186 ~g~V~al~-~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~-~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~ 262 (415)
.|+|.+|. .-||+||+++.... |.+|++++. +.++....-+ .+...++++..|.++.++ -.++.++.|+...+
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTK 464 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccc
Confidence 47788887 45789899999888 999999873 2333322211 134566667778888888 78899999986654
Q ss_pred eEEEEecCCCc-ceeEEEEeeeCCeEEEe
Q 014962 263 KLEQIYCDPSQ-RLVADCVLMDVDTAVVS 290 (415)
Q Consensus 263 ~L~~varD~~~-~~vta~~~Ld~d~~l~a 290 (415)
+-.++---... ...+.+.|=+...+++.
T Consensus 465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 465 SWTEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred cceeeehhhhcccccceeeecccceEEee
Confidence 33333222222 23445555444555444
No 27
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=2.7 Score=45.45 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCC
Q 014962 196 LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS 272 (415)
Q Consensus 196 ~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~ 272 (415)
+++.++++.+.. +.++++...+.+.|..+..--..-.|..|.+ +|++|++.+...-+++ |+-++.+...+.-++.
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v--~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV--YNLETLESHLLKVRLN 517 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEE--EEcccceeecchhccC
Confidence 345244453332 5566665544344544333322225666654 8999999996666644 5566777778877777
Q ss_pred cceeEEEEee--eCCeEEEeCCCCcEEEEecC
Q 014962 273 QRLVADCVLM--DVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 273 ~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~ 302 (415)
..+||+.+- +..+++++++++-++-+..+
T Consensus 518 -~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 518 -IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred -cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 999999987 44699999999999988873
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.36 E-value=4.7 Score=38.00 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEee
Q 014962 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT 86 (415)
Q Consensus 10 ~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT 86 (415)
+.++.+..|+.++++|+.+.+++...+ ...|+++|..+.+.+..++.. ..+.+ +.+. +..+++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~~~--~~~~~---~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 67 GTLPSGPDPELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEIPVG--VEPEG---MAVSPDGKIVVNTS 133 (300)
T ss_pred EeccCCCCccEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEeeCC--CCcce---EEECCCCCEEEEEe
Confidence 446666778899999998877665422 236999999888877766532 22222 3333 456777664
No 29
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=93.87 E-value=5.3 Score=39.56 Aligned_cols=167 Identities=15% Similarity=0.200 Sum_probs=97.3
Q ss_pred CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCC
Q 014962 40 DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSD 119 (415)
Q Consensus 40 ~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~ 119 (415)
+.|-..|++.|+.+-..+ ..++.++.|.||.+ ...-|||||+-. ++++|++..+.
T Consensus 112 gsWD~~ik~wD~R~~~~~--~~~d~~kkVy~~~v----~g~~LvVg~~~r----------------~v~iyDLRn~~--- 166 (323)
T KOG1036|consen 112 GSWDKTIKFWDPRNKVVV--GTFDQGKKVYCMDV----SGNRLVVGTSDR----------------KVLIYDLRNLD--- 166 (323)
T ss_pred cccCccEEEEeccccccc--cccccCceEEEEec----cCCEEEEeecCc----------------eEEEEEccccc---
Confidence 468889999999863333 35666778777766 457889999833 68999998420
Q ss_pred CCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeC--C
Q 014962 120 CGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL--D 197 (415)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~--g 197 (415)
.| ....+..++-.+.+|+-+. +
T Consensus 167 --------------------------------------~~------------------~q~reS~lkyqtR~v~~~pn~e 190 (323)
T KOG1036|consen 167 --------------------------------------EP------------------FQRRESSLKYQTRCVALVPNGE 190 (323)
T ss_pred --------------------------------------ch------------------hhhccccceeEEEEEEEecCCC
Confidence 01 0122233444556666554 3
Q ss_pred ceEEEEeCCeEEEEeeCCCCccceeeeeeeccc---------eEEEEEEE--eCCEEEEeecCCcEEEEEEEcc-CCeEE
Q 014962 198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR---------FMIMLLTA--HFTRIAVGDCRDGILFYSYHED-ARKLE 265 (415)
Q Consensus 198 ~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~---------~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~-~~~L~ 265 (415)
.|.+-++-.+|.|=-+..+..-.-++.+|-..+ ..+.+|.. .-++.+-|+.- |+ +..|+.. .++|.
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD-G~-V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD-GI-VNIWDLFNRKRLK 268 (323)
T ss_pred ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC-ce-EEEccCcchhhhh
Confidence 447778888888766654311113344443222 13444432 33445555543 44 4667765 46889
Q ss_pred EEecCCCcceeEEEEeeeC-CeEEEeC
Q 014962 266 QIYCDPSQRLVADCVLMDV-DTAVVSD 291 (415)
Q Consensus 266 ~varD~~~~~vta~~~Ld~-d~~l~aD 291 (415)
+++++ +..+.+..|=++ ..+..|+
T Consensus 269 q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 269 QLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred hccCC--CCceEEEEeccCCCeEEEEe
Confidence 99998 555666666433 3444443
No 30
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.75 E-value=6.8 Score=40.78 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred EEecCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeC
Q 014962 182 STTWPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF 240 (415)
Q Consensus 182 ~~~~~g~V~al~~~~-g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~ 240 (415)
..-.+|+|.||...+ |.||+++ +-.+||+|.+.. ..+|....-+. =.|++|+..+
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~aHY--Q~ITcL~fs~ 133 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLSAHY--QSITCLKFSD 133 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHHhhc--cceeEEEEeC
Confidence 455799999999886 5667777 888999999986 34555432111 1477776543
No 31
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.40 E-value=1.6 Score=45.01 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=36.0
Q ss_pred cceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 41 ~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
..-+.|++.|-.+...+. .|+.++.. +..+.|...-|..+-++. .|.+.+|++.+
T Consensus 366 t~d~~vkiwdlks~~~~a--~Fpght~~--vk~i~FsENGY~Lat~ad---------------d~~V~lwDLRK 420 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVA--KFPGHTGP--VKAISFSENGYWLATAAD---------------DGSVKLWDLRK 420 (506)
T ss_pred CCCceEEEEEcCCccccc--cCCCCCCc--eeEEEeccCceEEEEEec---------------CCeEEEEEehh
Confidence 445779999998777555 56664443 578888865554443331 35588899884
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.34 E-value=1.8 Score=47.58 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=85.6
Q ss_pred eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCc
Q 014962 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~ 123 (415)
..+||-+-...++++=.++. |.|+++|.. .+.++.||||- .|..++|....-
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~--PdGk~avIGt~----------------~G~C~fY~t~~l-------- 483 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLR--DLITAVCYS--PDGKGAVIGTF----------------NGYCRFYDTEGL-------- 483 (712)
T ss_pred cceEEeecCcCeeEeehhhh--hhheeEEec--cCCceEEEEEe----------------ccEEEEEEccCC--------
Confidence 45888887777788766666 888877654 45689999987 567777776620
Q ss_pred cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCc-eEEEeeeCC---ce
Q 014962 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGM-VLAICPYLD---RY 199 (415)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~-V~al~~~~g---~y 199 (415)
..+ . .+.+.+--.+...+. |+++.-+.| +.
T Consensus 484 -----------------k~~---------------------------~--~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 484 -----------------KLV---------------------------S--DFHIRLHNKKKKQGKRITGLQFFPGDPDEV 517 (712)
T ss_pred -----------------eEE---------------------------E--eeeEeeccCccccCceeeeeEecCCCCCeE
Confidence 000 0 112222223333344 888876644 53
Q ss_pred EEEEeCCeEEEEeeCCCCccceeee-eeeccce-EEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962 200 FLASAGNAFYVCGFPNDNPQRVRRF-AVGRTRF-MIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 200 Ll~~vg~~l~v~~~~~~~~~~L~~~-a~~~~~~-~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
||.+.-++|++|+... .+++.+. .+..+.. .--++...|.+|+.|---..|++++++..
T Consensus 518 LVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEecCCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 4455667899999965 2333332 2333333 23345558999999996667777766443
No 33
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.30 E-value=3.9 Score=44.37 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=76.9
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-e
Q 014962 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-G 246 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-G 246 (415)
+...+........-.+++.++|+ |-+.-| +.+..|+... ..++..+...++-.-..+.+.+++|++ |
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t---~~W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPET---NTWTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred cccccCCCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCC---CceeecCCcccccccceEEEECCEEEEEC
Confidence 44444444444455566778887 655555 4567888875 346666666555555557788888776 4
Q ss_pred ec-----CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCc
Q 014962 247 DC-----RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGS 295 (415)
Q Consensus 247 D~-----~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gN 295 (415)
.- .++ +-+|+++.++-..++.-..+|....+..++..-++++--+|+
T Consensus 483 G~~~~~~~~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 483 GFDGTSALSS--VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred CccCCCccce--EEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 42 333 588999999999998888888888888888876655544443
No 34
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.15 E-value=3.7 Score=37.94 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=55.1
Q ss_pred ceeEEEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEE
Q 014962 6 RLNVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVL 82 (415)
Q Consensus 6 ~~~i~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~l 82 (415)
.-++..++|.. ..+.++++|.++.++|+.... ...+.|+|.+ .+.+.. |.. ....+ +.+. +..++
T Consensus 48 ~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----~~~v~lyd~~-~~~i~~--~~~-~~~n~---i~wsP~G~~l 115 (194)
T PF08662_consen 48 NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----PAKVTLYDVK-GKKIFS--FGT-QPRNT---ISWSPDGRFL 115 (194)
T ss_pred CCccceeeccCCCceEEEEECcCCCEEEEEEccC-----CcccEEEcCc-ccEeEe--ecC-CCceE---EEECCCCCEE
Confidence 35677788864 589999999999998886322 2369999986 454444 332 23332 3343 55788
Q ss_pred EEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
++|..-+ ..|.|.+|++.
T Consensus 116 ~~~g~~n-------------~~G~l~~wd~~ 133 (194)
T PF08662_consen 116 VLAGFGN-------------LNGDLEFWDVR 133 (194)
T ss_pred EEEEccC-------------CCcEEEEEECC
Confidence 8875422 35889998887
No 35
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=93.11 E-value=2 Score=47.97 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=27.9
Q ss_pred eCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEE
Q 014962 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS 58 (415)
Q Consensus 13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~ 58 (415)
++.+....|.|+|..+.++|+..+ +.|+++|-.++.+..
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~d-------G~v~iw~~~~~~~~~ 174 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSCD-------GKVQIWDLQDGILSK 174 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEecC-------ceEEEEEcccchhhh
Confidence 445677788889988888888644 348888877766443
No 36
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=2.1 Score=42.32 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=63.1
Q ss_pred eEEEEeCCC----ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEE
Q 014962 8 NVRKFHLGG----TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLV 83 (415)
Q Consensus 8 ~i~~i~L~~----tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lv 83 (415)
|-+++.+.. .-..|-|+|++|++.+.+. .+.+.++|.-+++++.++++.+++--..+..+.-.+.+||+
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-------~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-------ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCCEEEEEeC-------CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 444455552 4467889999999887753 45699999999999999999999886665444446778888
Q ss_pred EeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 84 VGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
.|. ..|||++|.+.
T Consensus 249 ~gs----------------~dg~i~vw~~~ 262 (311)
T KOG1446|consen 249 SGS----------------DDGTIHVWNLE 262 (311)
T ss_pred Eec----------------CCCcEEEEEcC
Confidence 773 26899999997
No 37
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=92.94 E-value=11 Score=39.93 Aligned_cols=123 Identities=12% Similarity=0.133 Sum_probs=69.8
Q ss_pred eEEEEEEEecCC---ceEEEeeeC--CceEEEE-eCCeEEEEeeCCCC--ccceeeeeeeccceEEEEEE--EeCCEEEE
Q 014962 176 QLRLAYSTTWPG---MVLAICPYL--DRYFLAS-AGNAFYVCGFPNDN--PQRVRRFAVGRTRFMIMLLT--AHFTRIAV 245 (415)
Q Consensus 176 ~L~l~~~~~~~g---~V~al~~~~--g~yLl~~-vg~~l~v~~~~~~~--~~~L~~~a~~~~~~~i~sI~--~~~n~IlV 245 (415)
+++.+......| +|++ |.|+ |+.+.+| ....|.+|+.+.-. .....+ ..+..+.-|++|. ..|++++-
T Consensus 304 q~qVik~k~~~g~Rv~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCcee-eecCCCcchhhhcccCCceeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhh
Confidence 444444333332 3444 5563 5623344 44568999986411 111222 2233334567766 35666666
Q ss_pred eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEE-------eCCCCcEEEEe
Q 014962 246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV-------SDRKGSIAVLS 300 (415)
Q Consensus 246 GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~-------aD~~gNl~vl~ 300 (415)
=---.++-++..+.-+.-|...-.=+.+.-.+.|.|--++.+|. ++..|+|++|.
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 55566787877776666665555556666778888865543333 36678888887
No 38
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.89 E-value=5.8 Score=36.63 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=57.0
Q ss_pred CCceEEEEe-CCeEEEEeeCCCCccceeeeeeeccce----------EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeE
Q 014962 196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRF----------MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKL 264 (415)
Q Consensus 196 ~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~----------~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L 264 (415)
++. ++++. +..|+.++.+.. +.+-.... ..+. ....+...++.|++++.... ++.++...++.
T Consensus 122 ~~~-~~~~~~~g~l~~~d~~tG--~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~d~~tg~~ 195 (238)
T PF13360_consen 122 GDR-LYVGTSSGKLVALDPKTG--KLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--VVAVDLATGEK 195 (238)
T ss_dssp TTE-EEEEETCSEEEEEETTTT--EEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS--EEEEETTTTEE
T ss_pred cCE-EEEEeccCcEEEEecCCC--cEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe--EEEEECCCCCE
Confidence 445 77776 788888888752 23222222 2211 12333444668888776665 35557777764
Q ss_pred EEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 265 EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 265 ~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
. -.++ .....+.-..+++.+++.+++|+|++++..
T Consensus 196 ~-w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 196 L-WSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp E-EEEC--SS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred E-EEec--CCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 4 3333 223334344577788777799999999854
No 39
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.84 E-value=11 Score=37.68 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=58.4
Q ss_pred eEEEe-eeCCceEEEEe--CCeEEEEeeCCCCccceeeeeeecc---ceEEEEEEEeCCEEEEeecC-CcEEEEEEEccC
Q 014962 189 VLAIC-PYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT---RFMIMLLTAHFTRIAVGDCR-DGILFYSYHEDA 261 (415)
Q Consensus 189 V~al~-~~~g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~---~~~i~sI~~~~n~IlVGD~~-~Sv~ll~y~~~~ 261 (415)
..+|. .=.|++|.++. .+.|.+|++...+ ..|+......+ ...-..+...|++++|++-. ..|.+++.+++.
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~-g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPAT-GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTT-TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCC-CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 34444 23577677764 4569999995432 24554444332 12344445589999999854 589999999999
Q ss_pred CeEEEEecCCCcceeEEEEe
Q 014962 262 RKLEQIYCDPSQRLVADCVL 281 (415)
Q Consensus 262 ~~L~~varD~~~~~vta~~~ 281 (415)
+.|..+++...--..+|+.|
T Consensus 326 G~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 326 GKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEEESSSEEEEEE
T ss_pred CcEEEecccccCCCCEEEeC
Confidence 99999987654444555544
No 40
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.81 E-value=7.1 Score=39.36 Aligned_cols=138 Identities=14% Similarity=0.191 Sum_probs=81.8
Q ss_pred eeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCC----CcEEEEEeCCC-C-CeEEEEEEEEEC-Ce
Q 014962 7 LNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS----GSVLSSFKLEL-G-ETGKSMELVRVG-HE 79 (415)
Q Consensus 7 ~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t----~~~i~s~~l~~-~-E~~~si~~~~l~-~~ 79 (415)
...-.++=|.=||+|++||..+...+++ +-.|.|.+..-+. ++.++.+..-| + .--.....+.+. +.
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~------EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVN------ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEe------ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 3444567778999999999999776664 3345555543322 33444444222 2 111223333333 45
Q ss_pred eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCC
Q 014962 80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSP 159 (415)
Q Consensus 80 ~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (415)
+||.+.-- +-| .|-+|.+..
T Consensus 256 rFLYasNR----------g~d-----sI~~f~V~~--------------------------------------------- 275 (346)
T COG2706 256 RFLYASNR----------GHD-----SIAVFSVDP--------------------------------------------- 275 (346)
T ss_pred CEEEEecC----------CCC-----eEEEEEEcC---------------------------------------------
Confidence 78776522 212 788888882
Q ss_pred CCCCCCCccccccccceEEEEEEEecCCc-eEEEe-eeCCceEEEEeCCe---EEEEeeCCCCccceeeee
Q 014962 160 DDASCDGIKLEETETWQLRLAYSTTWPGM-VLAIC-PYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFA 225 (415)
Q Consensus 160 ~~~~~~g~~~~~~~~~~L~l~~~~~~~g~-V~al~-~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a 225 (415)
+ +-+|.++..++..|- +.... .-.|+ +|++.|++ |.+|+..... ..|.++.
T Consensus 276 ~-------------~g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d~~T-G~L~~~~ 331 (346)
T COG2706 276 D-------------GGKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERDKET-GRLTLLG 331 (346)
T ss_pred C-------------CCEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEcCCC-ceEEecc
Confidence 2 127999988888887 55544 22367 66666665 8999998753 3455533
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=92.70 E-value=0.58 Score=47.11 Aligned_cols=64 Identities=9% Similarity=-0.026 Sum_probs=41.2
Q ss_pred EEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE
Q 014962 180 AYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV 245 (415)
Q Consensus 180 ~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV 245 (415)
.|..+.+.+|+.+.-.+..||++| ++.+|+.|+-+. .+++-.+--+..+++--.+...+++|+-
T Consensus 321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt--G~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART--GQLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred heeccCCCceEEEEEcCcchheeeccCceEEeeeccc--cceEEEEecCchheeEEEEcCCCcEEEE
Confidence 344666777999998876667765 667788888765 2444444444455555566666776654
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.48 E-value=1.5 Score=44.98 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=56.3
Q ss_pred EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (415)
Q Consensus 9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~ 87 (415)
.+.+|++.-...+-..++..-+... ++. -.+.++|-.++++...|.-+.+-...-..-+.|. +..|++-|.+
T Consensus 335 ~~sv~~gg~vtSl~ls~~g~~lLss-sRD------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 335 TRSVPLGGRVTSLDLSMDGLELLSS-SRD------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred eeEeecCcceeeEeeccCCeEEeee-cCC------CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 4567777766666655554333333 322 2489999999999988886665555545555664 6799999955
Q ss_pred cCCCCCCCCCCCccccccEEEEEEEE
Q 014962 88 LSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 88 ~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
-|++++|.+.
T Consensus 408 ----------------dgsv~iW~v~ 417 (459)
T KOG0288|consen 408 ----------------DGSVYIWSVF 417 (459)
T ss_pred ----------------CCcEEEEEcc
Confidence 7899999998
No 43
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=92.36 E-value=6.5 Score=39.28 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=35.8
Q ss_pred eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 239 HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
.|.||+.|.. +-=.++.|...-+.|+.+=--...-....+.-=-...+|.+=..|++++....
T Consensus 260 dgeYv~a~s~-~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 260 DGEYVCAGSA-RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred CccEEEeccc-cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 5678888874 33446778787888876633222111111111011356777789998888743
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.35 E-value=1.6 Score=42.26 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=66.9
Q ss_pred CceEEEeeeC-CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEE
Q 014962 187 GMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLE 265 (415)
Q Consensus 187 g~V~al~~~~-g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~ 265 (415)
+-|.+++--. +++|++|.+++|++|++...+..-+........+..++.....|-..+-|----.+-++..+. -
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-----~ 115 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-----L 115 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-----c
Confidence 3455544322 344888899999999998654333444444444556666666666666655444444443332 2
Q ss_pred EEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecCC
Q 014962 266 QIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 266 ~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~~ 303 (415)
..-|.+..........|. ...+|++|..|||++..+-.
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 223444433333444444 34899999999999998654
No 45
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.17 E-value=0.71 Score=47.72 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=72.7
Q ss_pred EEeeeCCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccCCeEEE
Q 014962 191 AICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (415)
Q Consensus 191 al~~~~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~ 266 (415)
++..+++.||++|.-.+ |.+|.|.+. .++.. ....|-.+..|. ..|.+++.|.+...++++... .+.|.-
T Consensus 44 sl~~l~~~yllsaq~~rp~l~vw~i~k~--~~~~q--~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~ 117 (476)
T KOG0646|consen 44 SLTALNNEYLLSAQLKRPLLHVWEILKK--DQVVQ--YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLN 117 (476)
T ss_pred hhhhhchhheeeecccCccccccccCch--hhhhh--hcccccceeeeecCCCceEEEeecccCcEEEEEec--cccHHH
Confidence 34445566688876655 788998862 22332 222333455554 478899999999999888765 455543
Q ss_pred EecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 267 IYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 267 varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
+- +.+-..+|++.|.|++ .++.+-++|-++++.+-.
T Consensus 118 v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 118 VL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred HH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 33 6677789999998776 788889999999998533
No 46
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=2.9 Score=42.55 Aligned_cols=135 Identities=9% Similarity=0.028 Sum_probs=79.3
Q ss_pred EecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCC--ccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEE
Q 014962 183 TTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDN--PQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYH 258 (415)
Q Consensus 183 ~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~--~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~ 258 (415)
.--.++|..+...+|. |+.++++. +.+|..+..+ +..|.+.+... +.+.+.-.. ..+.++.|-.-+=.-+=.|+
T Consensus 102 ~l~~~~I~gl~~~dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 102 SLGTKSIKGLKLADGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccccchhhcCCE-EEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhcccceeeee
Confidence 4456788888888999 88887765 7888887422 23355556553 444444433 33444445544211122233
Q ss_pred ccCCeEEEEecCC--------CcceeEEEEeeeCC---eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccc
Q 014962 259 EDARKLEQIYCDP--------SQRLVADCVLMDVD---TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIA 327 (415)
Q Consensus 259 ~~~~~L~~varD~--------~~~~vta~~~Ld~d---~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~V 327 (415)
-++.+=+--|+.. .|.|.+++.||+.+ .|+.+-+.+-+.++.-- ..-.+.++|-+.+.+
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~----------~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR----------HQRRPVAQFDFLENP 249 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc----------ccCcceeEeccccCc
Confidence 3333333333332 47899999999773 78899999988776621 123345666666654
Q ss_pred cE
Q 014962 328 VS 329 (415)
Q Consensus 328 t~ 329 (415)
.+
T Consensus 250 is 251 (412)
T KOG3881|consen 250 IS 251 (412)
T ss_pred ce
Confidence 44
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.74 E-value=23 Score=38.63 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=45.4
Q ss_pred eEEEEeCCC-ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-EEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962 8 NVRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVG 85 (415)
Q Consensus 8 ~i~~i~L~~-tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-~i~s~~l~~~E~~~si~~~~l~~~~~lvVG 85 (415)
.+|.+...- +.+.+||+..++.+||.+++.+ |++.++...+ ..--+..+++-.+.+++-+ ++...+-+|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~-------IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g 87 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGN-------IEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSG 87 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCc-------EEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeec
Confidence 344443332 4456788888899888876654 8888887765 3455677888888877665 333555444
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.71 E-value=11 Score=34.80 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=52.5
Q ss_pred eeeCCceEEEEe-CCeEEEEeeCCCCccceeeeeee--cc-ceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEe
Q 014962 193 CPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG--RT-RFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIY 268 (415)
Q Consensus 193 ~~~~g~yLl~~v-g~~l~v~~~~~~~~~~L~~~a~~--~~-~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va 268 (415)
....++ ++++. ++.|+.++... +..+++..... .. ..........++++++++.-.. ++.++...+++.--.
T Consensus 73 ~~~~~~-v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGR-VYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK--LVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTE-EEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE--EEEEETTTTEEEEEE
T ss_pred eecccc-cccccceeeeEecccCC-cceeeeeccccccccccccccCceEecCEEEEEeccCc--EEEEecCCCcEEEEe
Confidence 344566 66554 45677777543 22233311111 01 1123344445899999888444 477788777663222
Q ss_pred cCCCccee---------EEEEeeeCCeEEEeCCCCcEEEEe
Q 014962 269 CDPSQRLV---------ADCVLMDVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 269 rD~~~~~v---------ta~~~Ld~d~~l~aD~~gNl~vl~ 300 (415)
.=..+... .+-..++++.++.++.+|.++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred ecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 22222211 223334555778888888755443
No 49
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.70 E-value=16 Score=36.61 Aligned_cols=126 Identities=15% Similarity=0.184 Sum_probs=81.5
Q ss_pred EEEEEEEecC---CceEEEeeeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCC
Q 014962 177 LRLAYSTTWP---GMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRD 250 (415)
Q Consensus 177 L~l~~~~~~~---g~V~al~~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~ 250 (415)
++++|..+.. -.+.++|+..++.+||.-|.+ |.+-++......-=.....++..+..+.|.-.|.+|. .-..+
T Consensus 124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA-TaStk 202 (346)
T KOG2111|consen 124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA-TASTK 202 (346)
T ss_pred hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE-EeccC
Confidence 4445544443 347777777787788888876 5777776421100011134555555666665666544 34556
Q ss_pred cEEEEEEEccC-CeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 251 GILFYSYHEDA-RKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 251 Sv~ll~y~~~~-~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
|--+=.|+.+. ..|.++-|-..+-.+.++.|-.+. -+.++-..|-|++|.+-+
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 66566788765 467889999999999999997555 556677789999998644
No 50
>PTZ00420 coronin; Provisional
Probab=91.56 E-value=9.1 Score=41.55 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=49.7
Q ss_pred EEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCe-EEEEEEEEEC-CeeEEEEeeec
Q 014962 11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET-GKSMELVRVG-HEQVLVVGTSL 88 (415)
Q Consensus 11 ~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~-~~si~~~~l~-~~~~lvVGT~~ 88 (415)
.+........++++|+++.++..+.+ ..|+++|+.+++.+.++.-..+-. ..++....|. +..+|+. |++
T Consensus 163 ~i~~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT-tG~ 234 (568)
T PTZ00420 163 QINMPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS-TGF 234 (568)
T ss_pred EEecCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE-EEc
Confidence 34445567888999998887666533 359999999999887665433321 1112222333 3345443 332
Q ss_pred CCCCCCCCCCCccccccEEEEEEEE
Q 014962 89 SSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 89 ~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
.. .+.+.|.+|++.
T Consensus 235 d~-----------~~~R~VkLWDlr 248 (568)
T PTZ00420 235 SK-----------NNMREMKLWDLK 248 (568)
T ss_pred CC-----------CCccEEEEEECC
Confidence 21 223568899988
No 51
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=91.44 E-value=3.7 Score=43.51 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=62.9
Q ss_pred CCceEEEeee-CCceEEEEeCCe--EEEEeeCCCCcccee-eeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962 186 PGMVLAICPY-LDRYFLASAGNA--FYVCGFPNDNPQRVR-RFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 186 ~g~V~al~~~-~g~yLl~~vg~~--l~v~~~~~~~~~~L~-~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
+|++...|-. .|+ .||.|++. |+||++.. ++|. ..-+|-..+..++-...|.||++|---+=|+++.|-+
T Consensus 290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt---~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-- 363 (636)
T KOG2394|consen 290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT---QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-- 363 (636)
T ss_pred cccccceeEcCCCc-eEEEEecCceEEEeeccH---HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc--
Confidence 3566666633 567 56777766 89999985 3333 2235556778888888999999999999899988853
Q ss_pred CeEEEEec-CCCcceeEEEEe
Q 014962 262 RKLEQIYC-DPSQRLVADCVL 281 (415)
Q Consensus 262 ~~L~~var-D~~~~~vta~~~ 281 (415)
. ..+|| .-++.||+.+.|
T Consensus 364 r--RVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 364 R--RVVARGQGHKSWVSVVAF 382 (636)
T ss_pred c--eEEEeccccccceeeEee
Confidence 3 34555 456789999888
No 52
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.42 E-value=2.8 Score=43.43 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=82.7
Q ss_pred EecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEe--CCEEEEeecCCcEEEEEEE
Q 014962 183 TTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYH 258 (415)
Q Consensus 183 ~~~~g~V~al~~~~g--~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~--~n~IlVGD~~~Sv~ll~y~ 258 (415)
+..+|+|.+++=..| ....++.--.+.+|..+. -.... .++..+..|..|++. +--+-||-.-+++-+++.
T Consensus 241 ~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~ve-tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi- 315 (479)
T KOG0299|consen 241 KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVE-TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI- 315 (479)
T ss_pred cccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHH-HHhCCccceeeechhcccceEEeccccceeEEEec-
Confidence 456889999986555 313455666689999975 11223 466667788888873 445777889999999998
Q ss_pred ccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962 259 EDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~ 301 (415)
+++-+|+-.+- ...+-|+.|++++.|+.+-.+|+|.....
T Consensus 316 ~eesqlifrg~---~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 316 PEESQLIFRGG---EGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred cccceeeeeCC---CCCeeeEEEecccceeeccCCceEEEeee
Confidence 77778877765 44677899999999999999999988774
No 53
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=91.42 E-value=29 Score=39.17 Aligned_cols=104 Identities=10% Similarity=0.155 Sum_probs=65.2
Q ss_pred CCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc--CCeEEEEecCC
Q 014962 196 LDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED--ARKLEQIYCDP 271 (415)
Q Consensus 196 ~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~--~~~L~~varD~ 271 (415)
.|. .+|+-+.. |.+.+.... ...+...-++.+...++....++++++.+.--.|.++.++.. .+.|.-+.+|.
T Consensus 107 ~g~-~iaagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n 183 (933)
T KOG1274|consen 107 SGK-MIAAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN 183 (933)
T ss_pred CCc-EEEeecCceeEEEEecccc--chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc
Confidence 356 55555555 445555542 223333567888888899999999999999999988877643 24556666665
Q ss_pred Ccc---eeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962 272 SQR---LVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 272 ~~~---~vta~~~L-d~d~~l~aD~~gNl~vl~~~ 302 (415)
.-. -++-...= +..++++.-.++-+.+++..
T Consensus 184 ~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred cccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 533 22222221 33577776666677777643
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.24 E-value=18 Score=36.41 Aligned_cols=96 Identities=14% Similarity=-0.028 Sum_probs=51.4
Q ss_pred CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962 196 LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR 274 (415)
Q Consensus 196 ~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~ 274 (415)
++. +++ +.++.++.++.... ...++. .. . ........+++|++++....+ +.++...+++.--..+....
T Consensus 241 ~~~-vy~~~~~g~l~a~d~~tG-~~~W~~-~~---~-~~~~p~~~~~~vyv~~~~G~l--~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 241 GGQ-VYAVSYQGRVAALDLRSG-RVLWKR-DA---S-SYQGPAVDDNRLYVTDADGVV--VALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CCE-EEEEEcCCEEEEEECCCC-cEEEee-cc---C-CccCceEeCCEEEEECCCCeE--EEEECCCCcEEEccccccCC
Confidence 344 444 45667888888642 222322 21 1 122334568899998855444 45555555432111111111
Q ss_pred eeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962 275 LVADCVLMDVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 275 ~vta~~~Ld~d~~l~aD~~gNl~vl~~ 301 (415)
..+.-.+.++.+++++.+|.|++++.
T Consensus 312 -~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 312 -QLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred -ccccCEEECCEEEEEeCCCEEEEEEC
Confidence 22222346778888999999999873
No 55
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.12 E-value=2.7 Score=45.07 Aligned_cols=106 Identities=9% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCceEEEe--eeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccC
Q 014962 186 PGMVLAIC--PYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 186 ~g~V~al~--~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
+|-|.++. +..-. |++|.-..|++|+|-+ +.|++ ...-....|.+|. ..|+-|++|..-+=+..+-.+-..
T Consensus 566 kG~vq~v~FHPs~p~-lfVaTq~~vRiYdL~k---qelvK-kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPY-LFVATQRSVRIYDLSK---QELVK-KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred CCceeEEEecCCCce-EEEEeccceEEEehhH---HHHHH-HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 45566554 34445 9999999999999986 44444 2222233455554 467889998887777555544321
Q ss_pred --CeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962 262 --RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 262 --~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~ 300 (415)
.+-.. .+..-++++.|= -...|+.+-.+|.++||.
T Consensus 641 kPyk~lr----~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 641 KPYKTLR----LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred chhHHhh----hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 11111 123345555542 234666777778877776
No 56
>PHA03098 kelch-like protein; Provisional
Probab=90.37 E-value=18 Score=38.39 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=52.5
Q ss_pred EeeeCCceEEEEeC--------CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC------cEEEEE
Q 014962 192 ICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD------GILFYS 256 (415)
Q Consensus 192 l~~~~g~yLl~~vg--------~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~------Sv~ll~ 256 (415)
++.++|+ |.+.-| +.+..|++.. ..+...+....+....+..+.++.|++ |-... .-.+..
T Consensus 385 ~~~~~~~-iYv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 385 VVNVNNL-IYVIGGISKNDELLKTVECFSLNT---NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEEECCE-EEEECCcCCCCcccceEEEEeCCC---CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 3445666 544333 3477888764 235544433223334455566777665 42110 112789
Q ss_pred EEccCCeEEEEecCCCcceeEEEEeeeCCe
Q 014962 257 YHEDARKLEQIYCDPSQRLVADCVLMDVDT 286 (415)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~Ld~d~ 286 (415)
|++..++-..++.-+.+++-.++..+++.-
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 490 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCIFNNKI 490 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEEECCEE
Confidence 999999888888766777766665555443
No 57
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.37 E-value=15 Score=37.92 Aligned_cols=102 Identities=20% Similarity=0.287 Sum_probs=64.5
Q ss_pred eeeEEEEeCCCCcEEEEEeCCC-------CCeEEEEEEEEE--CCe----eEEEEeeecCCCCCCCCCCCccccccEEEE
Q 014962 43 SSDICCVDPLSGSVLSSFKLEL-------GETGKSMELVRV--GHE----QVLVVGTSLSSGPAIMPSGEAESTKGRLIV 109 (415)
Q Consensus 43 ~s~i~l~d~~t~~~i~s~~l~~-------~E~~~si~~~~l--~~~----~~lvVGT~~~~~~~~~~~~e~~~~~Gri~v 109 (415)
..+|-++|-..-.+|..-.+.+ .+.+++++-..+ +++ ..+.|||. .|.+++
T Consensus 106 ~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn----------------~G~v~~ 169 (395)
T PF08596_consen 106 SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN----------------SGNVLT 169 (395)
T ss_dssp TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET----------------TSEEEE
T ss_pred CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC----------------CCCEEE
Confidence 4579999998878887655544 467777654443 343 79999988 699999
Q ss_pred EEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEE-ecCCc
Q 014962 110 LCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYST-TWPGM 188 (415)
Q Consensus 110 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~-~~~g~ 188 (415)
|.+.... .++|..+++..+ ..+++
T Consensus 170 fkIlp~~-------------------------------------------------------~g~f~v~~~~~~~~~~~~ 194 (395)
T PF08596_consen 170 FKILPSS-------------------------------------------------------NGRFSVQFAGATTNHDSP 194 (395)
T ss_dssp EEEEE-G-------------------------------------------------------GG-EEEEEEEEE--SS--
T ss_pred EEEecCC-------------------------------------------------------CCceEEEEeeccccCCCc
Confidence 9998310 124778888877 67888
Q ss_pred eEEEeeeCC-----------------------ceEEEEeCCeEEEEeeCC
Q 014962 189 VLAICPYLD-----------------------RYFLASAGNAFYVCGFPN 215 (415)
Q Consensus 189 V~al~~~~g-----------------------~yLl~~vg~~l~v~~~~~ 215 (415)
|.+|++|+. .|++++.-..++++.+..
T Consensus 195 i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 195 ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp --EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 988888831 247777777799998876
No 58
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.19 E-value=23 Score=36.01 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=88.0
Q ss_pred ceEEEEEEE--------ecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeee---ccceEEEEEEEeCCEE
Q 014962 175 WQLRLAYST--------TWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG---RTRFMIMLLTAHFTRI 243 (415)
Q Consensus 175 ~~L~l~~~~--------~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~---~~~~~i~sI~~~~n~I 243 (415)
++|+++|-+ .++.+|.++.--+.| |+|..-..+|+|+++. -++|.....+ .....+.++...+.++
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMNRKR-LVVCLEESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEccce-EEEEEcccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceE
Confidence 578888755 467889998866778 9999999999999986 4455443333 1223555555566688
Q ss_pred EEeecCCcEEEEEEEccCCeE-EEEecCCCcceeEEEEeeeCCeE-EEeCCCCc-EEEEecCCCcCCCCCCCCccceeee
Q 014962 244 AVGDCRDGILFYSYHEDARKL-EQIYCDPSQRLVADCVLMDVDTA-VVSDRKGS-IAVLSCSDRLEDNASPECNLTPNCA 320 (415)
Q Consensus 244 lVGD~~~Sv~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~d~~-l~aD~~gN-l~vl~~~~~~~~~~~~~~kL~~~~~ 320 (415)
..=|...+=.++-|+..+-+= ..+. .+...+.|+.|=.++++ ..|-..|- |.|+..+. .+|+ -+
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------G~kl---~e 211 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------GQKL---YE 211 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------ccEe---ee
Confidence 887777766677777654211 2221 33445555555444444 34444444 67777653 1343 45
Q ss_pred eecCccccEEEeece
Q 014962 321 YHMGEIAVSIRKGSF 335 (415)
Q Consensus 321 fhlGd~Vt~~~~gsl 335 (415)
|.=|-...++..-+|
T Consensus 212 FRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSF 226 (391)
T ss_pred eeCCceeeEEEEEEE
Confidence 666666555554444
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=90.19 E-value=2.7 Score=43.83 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=123.4
Q ss_pred EEEEeCCCccCEEEEecCC-CEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEee
Q 014962 9 VRKFHLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGT 86 (415)
Q Consensus 9 i~~i~L~~tp~~I~y~~~~-~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT 86 (415)
+.+..++..|..+-+||+. +.|+++.++. .|+..|-.++++++.|. ++.-++..+.|-. ..++| .|
T Consensus 293 ~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~-------ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~~g~rFi-ss 360 (503)
T KOG0282|consen 293 LSRFHLDKVPTCVKFHPDNQNIFLVGGSDK-------KIRQWDIRSGKVVQEYD----RHLGAILDITFVDEGRRFI-SS 360 (503)
T ss_pred EEEEecCCCceeeecCCCCCcEEEEecCCC-------cEEEEeccchHHHHHHH----hhhhheeeeEEccCCceEe-ee
Confidence 4578899999999999997 7888876654 49999999999887663 5666777777743 34443 33
Q ss_pred ecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCC
Q 014962 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (415)
Q Consensus 87 ~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g 166 (415)
+- -+.+++|+... |-
T Consensus 361 SD---------------dks~riWe~~~--------------------------------------------~v------ 375 (503)
T KOG0282|consen 361 SD---------------DKSVRIWENRI--------------------------------------------PV------ 375 (503)
T ss_pred cc---------------CccEEEEEcCC--------------------------------------------Cc------
Confidence 31 12677777762 11
Q ss_pred ccccccccceEEEEEEE-ecCCceEEEeeeCCceEEE-EeCCeEEEEeeCCCCccceee-eeeeccceEEEEEEE--eCC
Q 014962 167 IKLEETETWQLRLAYST-TWPGMVLAICPYLDRYFLA-SAGNAFYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTA--HFT 241 (415)
Q Consensus 167 ~~~~~~~~~~L~l~~~~-~~~g~V~al~~~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~-~a~~~~~~~i~sI~~--~~n 241 (415)
.++++... ...-|..++.+..+- +++ +++|.+++|.....-+.-.++ ..-+...-|.+.+.. .|.
T Consensus 376 ---------~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 376 ---------PIKNIADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred ---------cchhhcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 22222222 233456666666444 444 688889998876421111111 122233336666654 678
Q ss_pred EEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEE
Q 014962 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVL 299 (415)
Q Consensus 242 ~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl 299 (415)
+++-||.--.|.|+.|+... |.-.-+-. ..-|+.+..-+. +.+++++-+|-|.++
T Consensus 446 ~l~SGdsdG~v~~wdwkt~k--l~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTK--LVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred eEEeecCCccEEEeechhhh--hhhccccC-CcceEEEEecCCCcceeEecccCceeEec
Confidence 99999999999999988532 22222222 223445554433 467888888887654
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.96 E-value=28 Score=36.53 Aligned_cols=115 Identities=7% Similarity=0.041 Sum_probs=76.3
Q ss_pred EecCCceEEEeee-CCceEEEEeC--CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 183 TTWPGMVLAICPY-LDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 183 ~~~~g~V~al~~~-~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
......|++++=. .|. ++++.+ ..|++|+.+. .+.++++..+..++........+++|+.++...=+ .-|+.
T Consensus 243 ~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i--~vwd~ 317 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI--RVWDL 317 (456)
T ss_pred cCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE--EEEEC
Confidence 3567778888722 355 555444 3489999987 35677778787777777777889999999664444 55677
Q ss_pred cCCe---EEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecC
Q 014962 260 DARK---LEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 260 ~~~~---L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~ 302 (415)
..++ +.++.++..+..++.+.|= +.+.++.+=.++.+..+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 6666 3455555555577777773 44566666556566665544
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.92 E-value=15 Score=40.68 Aligned_cols=172 Identities=10% Similarity=0.060 Sum_probs=107.3
Q ss_pred eEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCcc
Q 014962 45 DICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMT 124 (415)
Q Consensus 45 ~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~ 124 (415)
+|||-++...+.+..|. =++.|+|++- .--++.|++=|.- -|++-+|.|..
T Consensus 391 TVRLWh~~~~~CL~~F~--HndfVTcVaF-nPvDDryFiSGSL----------------D~KvRiWsI~d---------- 441 (712)
T KOG0283|consen 391 TVRLWHPGRKECLKVFS--HNDFVTCVAF-NPVDDRYFISGSL----------------DGKVRLWSISD---------- 441 (712)
T ss_pred cEEeecCCCcceeeEEe--cCCeeEEEEe-cccCCCcEeeccc----------------ccceEEeecCc----------
Confidence 68888888888887654 4567776532 1126789998854 46788888872
Q ss_pred ccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEE
Q 014962 125 FCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLAS 203 (415)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~ 203 (415)
-+.++-.+++..|+|+|-. .|+|.|+|
T Consensus 442 ----------------------------------------------------~~Vv~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 442 ----------------------------------------------------KKVVDWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ----------------------------------------------------CeeEeehhhhhhheeEEeccCCceEEEE
Confidence 2345568888999999954 46767776
Q ss_pred -eCCeEEEEeeCCCCccceeeeeeeccc---------eEEEEEEEe---CCEEEEeecCCcEEEEEEEccCCeEEEEecC
Q 014962 204 -AGNAFYVCGFPNDNPQRVRRFAVGRTR---------FMIMLLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQIYCD 270 (415)
Q Consensus 204 -vg~~l~v~~~~~~~~~~L~~~a~~~~~---------~~i~sI~~~---~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD 270 (415)
....+++|.-..- + ++. ...+. -.|+.++.. .+.|+|...--=+-+ |+-.+..|++.-+.
T Consensus 470 t~~G~C~fY~t~~l--k-~~~--~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI--~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGL--K-LVS--DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRI--YDGRDKDLVHKFKG 542 (712)
T ss_pred EeccEEEEEEccCC--e-EEE--eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEE--Eeccchhhhhhhcc
Confidence 5666788876541 1 111 01111 147777764 346777554444433 34444566666665
Q ss_pred CCccee-EEEEee-eCCeEEEeCCCCcEEEEecCCC
Q 014962 271 PSQRLV-ADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 271 ~~~~~v-ta~~~L-d~d~~l~aD~~gNl~vl~~~~~ 304 (415)
+....- ..+.|. |...+|++-.+-.+++.++++.
T Consensus 543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 554332 344454 5557888878888999997553
No 62
>PHA02713 hypothetical protein; Provisional
Probab=89.91 E-value=24 Score=38.18 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=60.8
Q ss_pred CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecC---CcE-EEEEEEccC-CeEEEEecCCCcceeEEE
Q 014962 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCR---DGI-LFYSYHEDA-RKLEQIYCDPSQRLVADC 279 (415)
Q Consensus 206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~---~Sv-~ll~y~~~~-~~L~~varD~~~~~vta~ 279 (415)
+.+..|+... ..+...+....+-.-..+.+.++.|+| |... ... .+.+|+++. ++-..++.=+.+|....+
T Consensus 432 ~~ve~YDP~t---d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 432 NKVIRYDTVN---NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred ceEEEECCCC---CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 3477788875 335555554444344566778888766 5332 112 357999998 789999887788888888
Q ss_pred EeeeCCeEEEeCCCCcEEEEecCC
Q 014962 280 VLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 280 ~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
..+++.-++.+-.+|.--+-.|++
T Consensus 509 ~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 509 ILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred EEECCEEEEEeeecceeehhhcCc
Confidence 888888655554455322333444
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=89.72 E-value=4.9 Score=38.95 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=49.0
Q ss_pred eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEe
Q 014962 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVG 85 (415)
Q Consensus 8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVG 85 (415)
-+.++-+..-+..+-++++.+.+.++ ..++|.+.|+++|..+.+++++-|=. +..|. ++.++|-|
T Consensus 177 ~v~sL~~~s~VtSlEvs~dG~ilTia--------~gssV~Fwdaksf~~lKs~k~P~nV~-----SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 177 EVQSLEFNSPVTSLEVSQDGRILTIA--------YGSSVKFWDAKSFGLLKSYKMPCNVE-----SASLHPKKEFFVAG 242 (334)
T ss_pred EEEEEecCCCCcceeeccCCCEEEEe--------cCceeEEeccccccceeeccCccccc-----cccccCCCceEEec
Confidence 45677788888888888888776554 36889999999999999999887644 34443 45666666
No 64
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=89.61 E-value=7.8 Score=39.09 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=74.3
Q ss_pred EEEEeCCeEEEEeeCCCCc--cceeee-----eeecc-ceEEEEEEEeCCEEEEeec-CCcEEEEEEEccCCeEEEEecC
Q 014962 200 FLASAGNAFYVCGFPNDNP--QRVRRF-----AVGRT-RFMIMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCD 270 (415)
Q Consensus 200 Ll~~vg~~l~v~~~~~~~~--~~L~~~-----a~~~~-~~~i~sI~~~~n~IlVGD~-~~Sv~ll~y~~~~~~L~~varD 270 (415)
++.=.++.|.||++..... +.|+.. .|.+. ..-...|+..|.++++.+= .+|+++++.++..++|..++.-
T Consensus 207 ~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 207 LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 4455667777777765210 112221 22211 1246677778999999994 5699999999999999988765
Q ss_pred CCcce-eEEEEeeeCC-eEEEe-CCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962 271 PSQRL-VADCVLMDVD-TAVVS-DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (415)
Q Consensus 271 ~~~~~-vta~~~Ld~d-~~l~a-D~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~ 330 (415)
..-.. -..-.|=..+ .++++ .+..||.+|+.++ ++ -+|.....+-.+..++++
T Consensus 287 ~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~-----~T--G~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK-----ET--GRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC-----CC--ceEEecccccCCCCcEEE
Confidence 44333 2233332222 33443 5567799999876 22 256666665554444444
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=89.42 E-value=11 Score=36.86 Aligned_cols=79 Identities=10% Similarity=0.168 Sum_probs=49.8
Q ss_pred EEEEEEecCCceEEEee-eCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962 178 RLAYSTTWPGMVLAICP-YLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY 255 (415)
Q Consensus 178 ~l~~~~~~~g~V~al~~-~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll 255 (415)
+.+++.+++--+.-++- +.+.++++..| .+|.+..|.. -+-+...-.+-.+++...+...|-+..+|-+-..++|+
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 33444555555555553 33443666677 6788988864 11222223344556888888899999999888888887
Q ss_pred EEE
Q 014962 256 SYH 258 (415)
Q Consensus 256 ~y~ 258 (415)
-.+
T Consensus 217 D~~ 219 (313)
T KOG1407|consen 217 DVD 219 (313)
T ss_pred Chh
Confidence 554
No 66
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.37 E-value=32 Score=36.41 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred EEEecCCCEEEEEEEee-----------CCCcceeeEEEEeCCCCcEEEEEeCCCC
Q 014962 21 VLYHSESRLLIVMRTEL-----------NNDTCSSDICCVDPLSGSVLSSFKLELG 65 (415)
Q Consensus 21 I~y~~~~~~~~v~~~~~-----------~~~~~~s~i~l~d~~t~~~i~s~~l~~~ 65 (415)
.++++..+.+++.+.+. .++.+.+.|--+|..|++.+.++++.+.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 46666667676765432 1234556899999999999999987654
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=89.29 E-value=7.3 Score=37.83 Aligned_cols=120 Identities=10% Similarity=0.001 Sum_probs=81.8
Q ss_pred EEEEEEEecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEE--EEEEEeCCEEEEeecCCcEE
Q 014962 177 LRLAYSTTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMI--MLLTAHFTRIAVGDCRDGIL 253 (415)
Q Consensus 177 L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i--~sI~~~~n~IlVGD~~~Sv~ 253 (415)
-+.+++-+++.+|.++.-. .|+||.+|-|..|.-|+.+. +..+-.+++|+.| .+|...+++.++|--+- +
T Consensus 175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~--~ 247 (334)
T KOG0278|consen 175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS-----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDF--K 247 (334)
T ss_pred CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc-----ccceeeccCccccccccccCCCceEEecCcce--E
Confidence 4557778899999999854 57888899999999999875 3333456777654 45667778777776543 4
Q ss_pred EEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962 254 FYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~ 303 (415)
+++||-..+.=+..----.+.-|-|+.|- |...+..+-.+|.|.+.+..+
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 46666544321222112344556777775 445788888899999999765
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=35 Score=36.31 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=124.4
Q ss_pred CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (415)
Q Consensus 15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~ 94 (415)
.+.+..+.|.+++..++|++.. +.|+|.|..+...+..+...-..+|-|+.- +...+..|.-
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k~~~~~~~~h~~rvg~laW----~~~~lssGsr------- 278 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQKKTRTLRGSHASRVGSLAW----NSSVLSSGSR------- 278 (484)
T ss_pred CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhccccccccCCcCceeEEEec----cCceEEEecC-------
Confidence 6688999999999999998744 459999988777666555543455555432 2344444432
Q ss_pred CCCCCccccccEEEEEEEEecccCCC----CCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccc
Q 014962 95 MPSGEAESTKGRLIVLCIEHMQNSDC----GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE 170 (415)
Q Consensus 95 ~~~~e~~~~~Gri~vf~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~ 170 (415)
-|.|+.+++...+.-.. -...+|+=+-+..-+- -+..+|.+.. .+=
T Consensus 279 ---------~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~---------lASGgnDN~~------------~Iw 328 (484)
T KOG0305|consen 279 ---------DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ---------LASGGNDNVV------------FIW 328 (484)
T ss_pred ---------CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---------eccCCCccce------------Eec
Confidence 45566666653110000 0001111111100000 0000000000 000
Q ss_pred ccccceEEEEEEEecCCceEEEe--eeCCceEEEEeCCe---EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCE--E
Q 014962 171 ETETWQLRLAYSTTWPGMVLAIC--PYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR--I 243 (415)
Q Consensus 171 ~~~~~~L~l~~~~~~~g~V~al~--~~~g~yLl~~vg~~---l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~--I 243 (415)
.. ...-.+++-.+..++|.||. ++....|+.|-|.+ |..|+-.. .+.+ ...++...|.+|.=.+.+ |
T Consensus 329 d~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~--g~~i---~~vdtgsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 329 DG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT--GARI---DSVDTGSQVCSLIWSKKYKEL 402 (484)
T ss_pred cC-CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC--CcEe---cccccCCceeeEEEcCCCCEE
Confidence 00 00112234466778888876 77666244455554 34444432 1223 345667788888765543 4
Q ss_pred EE--eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962 244 AV--GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 244 lV--GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~ 303 (415)
+. |....-|.+++|-. -+.+..+...... |..+..= |.++++.+..+.||.++.+-+
T Consensus 403 ~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R--Vl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPS-MKLVAELLGHTSR--VLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEecCCCCCcEEEEeccc-cceeeeecCCcce--eEEEEECCCCCEEEEecccCcEEeccccC
Confidence 43 78888999999965 3444555444333 5554443 446899999999999999644
No 69
>PTZ00421 coronin; Provisional
Probab=88.77 E-value=36 Score=36.26 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=53.6
Q ss_pred cCCceEEEee-eCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEE-Eeec---CCcEEEEE
Q 014962 185 WPGMVLAICP-YLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIA-VGDC---RDGILFYS 256 (415)
Q Consensus 185 ~~g~V~al~~-~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~Il-VGD~---~~Sv~ll~ 256 (415)
..+.|++|+- -.|.+|+.+ -.++|.+|++... +.+.....+. ......+. ..+++|+ +|.. .+.+.++.
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG--TIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCC--cEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 3467888873 356634333 3456999999852 3333322221 11111111 2334554 3422 34566655
Q ss_pred EEccCCeEEEEecCCCcceeEEEEeeeCC--eE-EEeCCCCcEEEEecCC
Q 014962 257 YHEDARKLEQIYCDPSQRLVADCVLMDVD--TA-VVSDRKGSIAVLSCSD 303 (415)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~Ld~d--~~-l~aD~~gNl~vl~~~~ 303 (415)
.+.....+....-|.. ....+.+.+.+ .+ +++..+|+|.++++..
T Consensus 244 lr~~~~p~~~~~~d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 244 TRKMASPYSTVDLDQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCCCCceeEeccCCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 4432323332222221 12233344544 33 4445689999998754
No 70
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.30 E-value=30 Score=34.69 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=76.0
Q ss_pred CceEEEeee-CCceEEE--EeCCeEEEEeeCCCCcc--ceeeeeee----cc--ceEEEEEEEeCCEEEEeec-CCcEEE
Q 014962 187 GMVLAICPY-LDRYFLA--SAGNAFYVCGFPNDNPQ--RVRRFAVG----RT--RFMIMLLTAHFTRIAVGDC-RDGILF 254 (415)
Q Consensus 187 g~V~al~~~-~g~yLl~--~vg~~l~v~~~~~~~~~--~L~~~a~~----~~--~~~i~sI~~~~n~IlVGD~-~~Sv~l 254 (415)
..+..|.-- +|+++.+ -..+.|.+|++...+.. .+...+.. .. ...-..|...+.+++|+.- ..++++
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 345555522 4553433 35788999999832211 12221211 10 1234445567899999985 568999
Q ss_pred EEEEccCCeEEEEecCCC-cceeEEEEee-eCCeEEEeC-CCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962 255 YSYHEDARKLEQIYCDPS-QRLVADCVLM-DVDTAVVSD-RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (415)
Q Consensus 255 l~y~~~~~~L~~varD~~-~~~vta~~~L-d~d~~l~aD-~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~ 330 (415)
++.+++.++|..+..=.. ..+-..+.+- |.+.++++. ..++|.+++.++ ++ -+|...+...-...++++
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~-----~t--G~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP-----DT--GKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-----TT--TEEEEEEEEEESSSEEEE
T ss_pred EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC-----CC--CcEEEecccccCCCCEEE
Confidence 999888787877654322 2233444442 334566665 566799998865 12 367776654444444443
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.22 E-value=57 Score=37.84 Aligned_cols=228 Identities=17% Similarity=0.175 Sum_probs=139.7
Q ss_pred ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC--CCCeEEEEEEEEECCeeEEEEeeecCCCCCC
Q 014962 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE--LGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~--~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~ 94 (415)
.|+.+.+||-..+++++-- +..|++.|-...+.+..|... +.-.|+.++.+.=.+..++++|+.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~-------r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~------- 1131 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD-------RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS------- 1131 (1387)
T ss_pred CCceeeecCCCceeEEcCC-------cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc-------
Confidence 5888999999888887731 234888888777777766643 356777777775555688888866
Q ss_pred CCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccccc
Q 014962 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (415)
Q Consensus 95 ~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (415)
-|-|-+|+=-. + + -
T Consensus 1132 ---------dGvIRIwk~y~---------------------------------------------~-----~-------~ 1145 (1387)
T KOG1517|consen 1132 ---------DGVIRIWKDYA---------------------------------------------D-----K-------W 1145 (1387)
T ss_pred ---------CceEEEecccc---------------------------------------------c-----c-------c
Confidence 34444444321 0 0 0
Q ss_pred ceEEEEEE----------EecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEE---eC
Q 014962 175 WQLRLAYS----------TTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HF 240 (415)
Q Consensus 175 ~~L~l~~~----------~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~ 240 (415)
.+.+|+.. ..--|.|..-....|+ |+++-+-+ |++|+.... +.... --+.....+++|.. .|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E--~~~~d-iP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKE--QVVAD-IPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccc--eeEee-cccCCCccceeecccccCC
Confidence 01222210 0011355555666787 76665444 678888752 22222 12234456777765 57
Q ss_pred CEEEEeecCCcEEEEEEEcc-CCeEEEEecCCCcce-eEEEEee--eCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccc
Q 014962 241 TRIAVGDCRDGILFYSYHED-ARKLEQIYCDPSQRL-VADCVLM--DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLT 316 (415)
Q Consensus 241 n~IlVGD~~~Sv~ll~y~~~-~~~L~~varD~~~~~-vta~~~L--d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~ 316 (415)
|.|++|=.--||-++.-+-. ...++.+-|..+... +.-+.+= ..+.++.+-.+|.|.+++.--... ...+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~~ 1296 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFLT 1296 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccce
Confidence 99999999999988755432 456777777766553 3333332 223688999999999988533111 12466
Q ss_pred eeeeeecCccccEEEee
Q 014962 317 PNCAYHMGEIAVSIRKG 333 (415)
Q Consensus 317 ~~~~fhlGd~Vt~~~~g 333 (415)
-..++..|...|+|..-
T Consensus 1297 iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVH 1313 (1387)
T ss_pred eeeccccCccceeeeec
Confidence 66777778878887533
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=87.80 E-value=52 Score=36.94 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=74.3
Q ss_pred ecCCceEEEeeeCCce-EEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962 184 TWPGMVLAICPYLDRY-FLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 184 ~~~g~V~al~~~~g~y-Ll~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
.+...|+++.+-.--- +++| .+.+|++++++.| +.|+...--..+..-.+-.+.|+.+++.--..|. +.-||-+.
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~-m~~wDLe~ 276 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD-MAFWDLEK 276 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEccccceeEEEeccCCCeeEEeccCCce-EEEEEcCC
Confidence 3557788887544321 3344 3466999999985 4566633322444444445678887775544442 34567788
Q ss_pred CeEEEEecCCCcceeEEEEeeeCCeEEEe---CCCCcEEEEe
Q 014962 262 RKLEQIYCDPSQRLVADCVLMDVDTAVVS---DRKGSIAVLS 300 (415)
Q Consensus 262 ~~L~~varD~~~~~vta~~~Ld~d~~l~a---D~~gNl~vl~ 300 (415)
.+|+-+-++.+...++...||....++++ |..--+|++.
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 99999999989889999999988865543 5444455555
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.52 E-value=25 Score=32.94 Aligned_cols=79 Identities=9% Similarity=0.201 Sum_probs=49.1
Q ss_pred EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeee
Q 014962 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (415)
Q Consensus 9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~ 87 (415)
+..++.+..|+.++++|+.+.+++...+ ...+..+|..+++.+..... .+.+.+ +.+. +..++++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~~~~~~~~~~--~~~~~~---~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 108 LAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKTYEIVDNVLV--DQRPRF---AEFTADGKELWVSSE 176 (300)
T ss_pred EeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCCCeEEEEEEc--CCCccE---EEECCCCCEEEEEcC
Confidence 4556667778899999998887766422 12466678888776654432 333333 3333 4456665532
Q ss_pred cCCCCCCCCCCCccccccEEEEEEEE
Q 014962 88 LSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 88 ~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
..|++.+|++.
T Consensus 177 ---------------~~~~v~i~d~~ 187 (300)
T TIGR03866 177 ---------------IGGTVSVIDVA 187 (300)
T ss_pred ---------------CCCEEEEEEcC
Confidence 24688888887
No 74
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.51 E-value=33 Score=34.30 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=66.0
Q ss_pred EEEEeCCC-ccCEEEEecCCCEEEEE----EEeeC-------CCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE
Q 014962 9 VRKFHLGG-TPKKVLYHSESRLLIVM----RTELN-------NDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV 76 (415)
Q Consensus 9 i~~i~L~~-tp~~I~y~~~~~~~~v~----~~~~~-------~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l 76 (415)
+..+|..+ -||-|..+|+.++++|+ .+.+. -....++|-++|..+++++...+|++.-+=+||.-+-+
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 44566666 89999999999999998 23322 24678999999999999999999999999999999888
Q ss_pred CCeeEEEEeeecC
Q 014962 77 GHEQVLVVGTSLS 89 (415)
Q Consensus 77 ~~~~~lvVGT~~~ 89 (415)
..+-.+++|--+.
T Consensus 171 ~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 171 DGDGTVAFAMQYQ 183 (305)
T ss_pred cCCCcEEEEEecC
Confidence 8777777776654
No 75
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.33 E-value=35 Score=37.12 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=76.1
Q ss_pred EEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE--e-e----cCCcEEE
Q 014962 182 STTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV--G-D----CRDGILF 254 (415)
Q Consensus 182 ~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV--G-D----~~~Sv~l 254 (415)
...+.|.+|++-+++|..-+ +.+-.|+... ..+..++....+-....+.+.+++|++ | | ..+| +
T Consensus 376 v~~l~g~iYavGG~dg~~~l----~svE~YDp~~---~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s--v 446 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSL----NSVECYDPVT---NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS--V 446 (571)
T ss_pred eEEECCEEEEEecccccccc----ccEEEecCCC---CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce--E
Confidence 35567777777777663122 3567888875 347776766666677888888887766 3 2 3334 4
Q ss_pred EEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCC
Q 014962 255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG 294 (415)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~g 294 (415)
..|++..++=..++.=..+|....+..+++.-++++..+|
T Consensus 447 e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred EEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 8999999999999999999999899999988776666555
No 76
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.06 E-value=8.8 Score=42.14 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=44.4
Q ss_pred ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE-CCeeEEEEeeecCCCCCCC
Q 014962 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIM 95 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l-~~~~~lvVGT~~~~~~~~~ 95 (415)
-.+.+.|||.+++.+-..++. .+|+-|-.++..+--| .++.. .+.++.+ .+..|++-|-.
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~-------tVRlWDv~~G~~VRiF---~GH~~-~V~al~~Sp~Gr~LaSg~e-------- 597 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDR-------TVRLWDVSTGNSVRIF---TGHKG-PVTALAFSPCGRYLASGDE-------- 597 (707)
T ss_pred ccceEEECCcccccccCCCCc-------eEEEEEcCCCcEEEEe---cCCCC-ceEEEEEcCCCceEeeccc--------
Confidence 456788888877776665554 3677776666665544 23322 2333333 35678887733
Q ss_pred CCCCccccccEEEEEEEE
Q 014962 96 PSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 96 ~~~e~~~~~Gri~vf~i~ 113 (415)
-|+|.+|++.
T Consensus 598 --------d~~I~iWDl~ 607 (707)
T KOG0263|consen 598 --------DGLIKIWDLA 607 (707)
T ss_pred --------CCcEEEEEcC
Confidence 6899999999
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.76 E-value=15 Score=35.49 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=86.1
Q ss_pred EEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc---CCeEEEEecCCCcce
Q 014962 201 LASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED---ARKLEQIYCDPSQRL 275 (415)
Q Consensus 201 l~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~---~~~L~~varD~~~~~ 275 (415)
+++.|.. +++|+... .+.+|+..-+..+...+...-.-..|+-|-+-.|+-++.-+.. +=+...-|+| .
T Consensus 74 f~s~GgDk~v~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D----~ 147 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNT--GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD----G 147 (307)
T ss_pred cccCCCCceEEEEEccc--CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC----c
Confidence 4544443 67888865 3567776666666555555444456666777778877655432 2233333444 4
Q ss_pred eEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccccCCCC
Q 014962 276 VADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESS 355 (415)
Q Consensus 276 vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~ 355 (415)
|+++.. .+..++++-.+|++.++..-. -+...=++|+.||++... ..
T Consensus 148 V~Si~v-~~heIvaGS~DGtvRtydiR~------------G~l~sDy~g~pit~vs~s--------------------~d 194 (307)
T KOG0316|consen 148 VSSIDV-AEHEIVAGSVDGTVRTYDIRK------------GTLSSDYFGHPITSVSFS--------------------KD 194 (307)
T ss_pred eeEEEe-cccEEEeeccCCcEEEEEeec------------ceeehhhcCCcceeEEec--------------------CC
Confidence 444443 566789999999999887432 222444789999998432 23
Q ss_pred CceEEEEeCCcceEEEEecChHHHHHHHH
Q 014962 356 QTTIIASTLLGSIVIFIPISSEEYELLEA 384 (415)
Q Consensus 356 ~~~ily~T~~GsIG~l~pl~~~~~~~L~~ 384 (415)
.++.+-++++++|-+| +++.=++|..
T Consensus 195 ~nc~La~~l~stlrLl---Dk~tGklL~s 220 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLL---DKETGKLLKS 220 (307)
T ss_pred CCEEEEeeccceeeec---ccchhHHHHH
Confidence 4677777777766544 4555555543
No 78
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=86.70 E-value=38 Score=34.14 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=72.8
Q ss_pred CceEE-EEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc-cCCeEEEEecCCC--
Q 014962 197 DRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE-DARKLEQIYCDPS-- 272 (415)
Q Consensus 197 g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~-~~~~L~~varD~~-- 272 (415)
++||. ++.+++|.+|+++. +.|.........-+-..+..+|-||++.-..--|.++..-- .++.|.++.|-+.
T Consensus 199 ~k~imsas~dt~i~lw~lkG---q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKG---QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred ceEEEEecCCCcEEEEecCC---ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 46554 56888999999984 66766555444456677788899999988777776664321 2456666666554
Q ss_pred --cceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 273 --QRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 273 --~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
..-|++..|-.++ .++..-++|.+.++..+-
T Consensus 276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 3457777776554 899999999999887543
No 79
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.09 E-value=6.4 Score=33.40 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=45.6
Q ss_pred eEEEEeeeC-----CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccccccc
Q 014962 276 VADCVLMDV-----DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350 (415)
Q Consensus 276 vta~~~Ld~-----d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~~~~~ 350 (415)
|+|+.+.|. +.++++-.+..|.+|+-. +...++...+.|++++.-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------------e~~~Ei~e~~~v~~L~~~----------------- 51 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------------EIVAEITETDKVTSLCSL----------------- 51 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------------cEEEEEecccceEEEEEc-----------------
Confidence 566666653 267777778899999822 234677778888887522
Q ss_pred cCCCCCceEEEEeCCcceEEEEe
Q 014962 351 SFESSQTTIIASTLLGSIVIFIP 373 (415)
Q Consensus 351 ~~~~~~~~ily~T~~GsIG~l~p 373 (415)
...+..|+..+|+||+.-.
T Consensus 52 ----~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 52 ----GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ----CCCEEEEEecCCEEEEEeC
Confidence 1256999999999999854
No 80
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.54 E-value=45 Score=33.93 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=51.2
Q ss_pred CCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962 196 LDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR 274 (415)
Q Consensus 196 ~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~ 274 (415)
.|. |++ +-+..++.++.... +.+++. .+.. ...+...+++|++++....+ +.++...++..= ..+....
T Consensus 256 ~~~-vy~~~~~g~l~ald~~tG-~~~W~~-~~~~----~~~~~~~~~~vy~~~~~g~l--~ald~~tG~~~W-~~~~~~~ 325 (394)
T PRK11138 256 GGV-VYALAYNGNLVALDLRSG-QIVWKR-EYGS----VNDFAVDGGRIYLVDQNDRV--YALDTRGGVELW-SQSDLLH 325 (394)
T ss_pred CCE-EEEEEcCCeEEEEECCCC-CEEEee-cCCC----ccCcEEECCEEEEEcCCCeE--EEEECCCCcEEE-cccccCC
Confidence 444 444 33556777777542 223332 2111 12345678889998866554 555555553321 1111111
Q ss_pred eeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962 275 LVADCVLMDVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 275 ~vta~~~Ld~d~~l~aD~~gNl~vl~~ 301 (415)
+..+.-.+.++.++++|.+|.|+++..
T Consensus 326 ~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 326 RLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred CcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 222223346778888999999998873
No 81
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.38 E-value=9.3 Score=43.67 Aligned_cols=194 Identities=20% Similarity=0.154 Sum_probs=112.0
Q ss_pred CcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCC
Q 014962 54 GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSS 133 (415)
Q Consensus 54 ~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~ 133 (415)
+-+..+.+.+++|....|+....++..--.|+|+...++...|..+....+++-.+..+...+ ++..++.|..+=|.+
T Consensus 811 g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~--ne~a~~v~~~~fs~~ 888 (1205)
T KOG1898|consen 811 GGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQ--NEAAFSVCAVDFSSS 888 (1205)
T ss_pred ccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecC--CcchhheeeeeeccC
Confidence 335567888888888888888777655556777766433223334444555666666666433 355555555555555
Q ss_pred ccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEee
Q 014962 134 QRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGF 213 (415)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~ 213 (415)
.+. +|-.|+.+.+|+. +-+ -+ ....++.|++
T Consensus 889 ~~~-~~~~v~~~~~~~l---------------------------------------------~~~-~~--~~g~~ytyk~ 919 (1205)
T KOG1898|consen 889 EYQ-PFVAVGVATTEQL---------------------------------------------DSK-SI--SSGFVYTYKF 919 (1205)
T ss_pred CCc-eEEEEEeeccccc---------------------------------------------ccc-cc--CCCceEEEEE
Confidence 554 4444443333321 111 11 4445677777
Q ss_pred CCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCC-cceeEEEEeeeCCeEEEeCC
Q 014962 214 PNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS-QRLVADCVLMDVDTAVVSDR 292 (415)
Q Consensus 214 ~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~-~~~vta~~~Ld~d~~l~aD~ 292 (415)
-..+ +.|.-.....++..+..|...++++++|= +=.|+-|+--+++|.--++--. |..++.+.- ....++++|.
T Consensus 920 ~~~g-~~lellh~T~~~~~v~Ai~~f~~~~Lagv---G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~VgD~ 994 (1205)
T KOG1898|consen 920 VRNG-DKLELLHKTEIPGPVGAICPFQGRVLAGV---GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVGDI 994 (1205)
T ss_pred EecC-ceeeeeeccCCCccceEEeccCCEEEEec---ccEEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEeec
Confidence 5433 23444333445557888888888888752 2235556655555544444433 444444433 5668899999
Q ss_pred CCcEEEEecCC
Q 014962 293 KGSIAVLSCSD 303 (415)
Q Consensus 293 ~gNl~vl~~~~ 303 (415)
.-.++.+++.+
T Consensus 995 qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 995 QESVHFVRYRR 1005 (1205)
T ss_pred cceEEEEEEec
Confidence 88888888766
No 82
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.86 E-value=29 Score=33.03 Aligned_cols=111 Identities=10% Similarity=0.151 Sum_probs=58.9
Q ss_pred eEEEeeeC--CceEEEEeCCeEEEEeeCCCCcccee-------------ee-eeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962 189 VLAICPYL--DRYFLASAGNAFYVCGFPNDNPQRVR-------------RF-AVGRTRFMIMLLTAHFTRIAVGDCRDGI 252 (415)
Q Consensus 189 V~al~~~~--g~yLl~~vg~~l~v~~~~~~~~~~L~-------------~~-a~~~~~~~i~sI~~~~n~IlVGD~~~Sv 252 (415)
|..|..+. +. |++=.++.|++|++..-...... +. ...+..++...-...+.+.++.=..+.+
T Consensus 38 I~ql~vl~~~~~-llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNL-LLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCE-EEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 77777776 56 66667889999998741100000 11 1112222331222345667777777899
Q ss_pred EEEEEEccCCeE-EEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 253 LFYSYHEDARKL-EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 253 ~ll~y~~~~~~L-~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
.++.|+...+++ ..+..=..+..+.++.++ .+.++++-+. .+.++..+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSK-GFYLIDLN 165 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCC-ceEEEecC
Confidence 999999854444 222222234455566666 4444444322 24445544
No 83
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=84.79 E-value=42 Score=33.00 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=130.9
Q ss_pred CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEe--CCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEeeecCCCC
Q 014962 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGP 92 (415)
Q Consensus 16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d--~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT~~~~~~ 92 (415)
++.|+|+++|.+++++.+.-+-. +-+.. ...|++++.+|=.+||. +++.+.. ..||+-.+--
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t-------~~Iw~k~~~efecv~~lEGHEnEV----K~Vaws~sG~~LATCSRD---- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDAT-------VVIWKKEDGEFECVATLEGHENEV----KCVAWSASGNYLATCSRD---- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccce-------EEEeecCCCceeEEeeeeccccce----eEEEEcCCCCEEEEeeCC----
Confidence 58999999999998887765432 22322 35588999888888884 6666764 4787755331
Q ss_pred CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (415)
Q Consensus 93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (415)
-.+.++++.+ ++ ..|+
T Consensus 127 ------------KSVWiWe~de---------------------------------------------dd------Efec- 142 (312)
T KOG0645|consen 127 ------------KSVWIWEIDE---------------------------------------------DD------EFEC- 142 (312)
T ss_pred ------------CeEEEEEecC---------------------------------------------CC------cEEE-
Confidence 2467777773 10 0111
Q ss_pred ccceEEEEEEEecCCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccce-EEEEE--EEeCCEEEEee
Q 014962 173 ETWQLRLAYSTTWPGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLL--TAHFTRIAVGD 247 (415)
Q Consensus 173 ~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~-~i~sI--~~~~n~IlVGD 247 (415)
...-.=|.+++++.+-. +-.+ ||++ --+.|.+|+...++. +.-++.++... .+-++ ...|++++.++
T Consensus 143 --~aVL~~HtqDVK~V~WH--Pt~d--lL~S~SYDnTIk~~~~~~ddd--W~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 143 --IAVLQEHTQDVKHVIWH--PTED--LLFSCSYDNTIKVYRDEDDDD--WECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred --EeeeccccccccEEEEc--CCcc--eeEEeccCCeEEEEeecCCCC--eeEEEEecCccceEEEEEecCCCceEEEec
Confidence 01112244455543322 3233 4544 457788887774321 33333333332 33333 45677888877
Q ss_pred cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccc
Q 014962 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIA 327 (415)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~V 327 (415)
=-.-+.++++... + -+.+.+.+..+.-- .+.+..+=.++-|.+|+-... ...|...|...-+--.+.-|
T Consensus 215 dD~tv~Iw~~~~~------~-~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~---~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD------L-SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDS---PDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred CCcceEeeeeccC------c-chhcccceEeeeec-ccceEeccCCCEEEEEEecCC---CCCchHHHHHhhhccccccc
Confidence 7767766764311 0 12344445444433 556666667778888884421 12233333332222335578
Q ss_pred cEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEE
Q 014962 328 VSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVI 370 (415)
Q Consensus 328 t~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~ 370 (415)
|+++ .+| +.+..++-++-+|.|-+
T Consensus 284 NsV~------w~p-------------~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 284 NSVQ------WNP-------------KVSNRLASGGDDGIVNF 307 (312)
T ss_pred ceEE------EcC-------------CCCCceeecCCCceEEE
Confidence 8774 222 33456777777877654
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=84.68 E-value=17 Score=38.65 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=73.8
Q ss_pred EEecCCceEEEeeeCCceEEEEeC---CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEE
Q 014962 182 STTWPGMVLAICPYLDRYFLASAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH 258 (415)
Q Consensus 182 ~~~~~g~V~al~~~~g~yLl~~vg---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~ 258 (415)
+.++.-.+.+++.-.++ =.+||| .+|++|.+..+....--++.-+..+...++....+.++++||+++=+.++...
T Consensus 439 ~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred eeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 33343344444433333 124444 56999999874311111223445555666777788999999999999776544
Q ss_pred ccCCeEEEEecCCCccee------EEEEee-eCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEE
Q 014962 259 EDARKLEQIYCDPSQRLV------ADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR 331 (415)
Q Consensus 259 ~~~~~L~~varD~~~~~v------ta~~~L-d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~ 331 (415)
..+ . -..+|. .++.-- +...+..+--+-|++++.+.. |... ..+-.-|.+. ||++.
T Consensus 518 s~~--~------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k-------P~~~-i~iknAH~~g-Vn~v~ 580 (603)
T KOG0318|consen 518 SRE--V------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK-------PAKH-IIIKNAHLGG-VNSVA 580 (603)
T ss_pred cCc--e------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC-------hhhh-eEeccccccC-ceeEE
Confidence 322 1 233444 222211 233566667788999998643 2223 3444556666 88764
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.67 E-value=19 Score=37.68 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred eCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCC
Q 014962 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP 92 (415)
Q Consensus 13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~ 92 (415)
.=+.-...+++.|....++-+. .+.|++.|-.++-.+-.-.+.-+-+|+|+.... +..-++-|
T Consensus 194 nhg~pVe~vl~lpsgs~iasAg--------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s--~~~rLlS~------- 256 (487)
T KOG0310|consen 194 NHGCPVESVLALPSGSLIASAG--------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS--DSTRLLSG------- 256 (487)
T ss_pred cCCCceeeEEEcCCCCEEEEcC--------CCeEEEEEecCCceehhhhhcccceEEEEEeec--CCceEeec-------
Confidence 3344556666766655555443 467999998866544333444677888887764 22333322
Q ss_pred CCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcccccc
Q 014962 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (415)
Q Consensus 93 ~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (415)
.--|++-+|++.
T Consensus 257 ---------sLD~~VKVfd~t----------------------------------------------------------- 268 (487)
T KOG0310|consen 257 ---------SLDRHVKVFDTT----------------------------------------------------------- 268 (487)
T ss_pred ---------ccccceEEEEcc-----------------------------------------------------------
Confidence 124677888855
Q ss_pred ccceEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEe
Q 014962 173 ETWQLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCG 212 (415)
Q Consensus 173 ~~~~L~l~~~~~~~g~V~al~~~~g-~yLl~~vg~~l~v~~ 212 (415)
.++++|.-.++|||.+|.-..| ..+++|.++-+..+.
T Consensus 269 ---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 269 ---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ---ceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 5788999999999999998764 558899998877666
No 86
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=84.41 E-value=44 Score=33.22 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=75.4
Q ss_pred eEEEEEEEecCC---ceEEEeeeC-CceEE-EEeCCeEEEEeeCCCCccceeeeeeeccc---eEEEEEEEeCCEEEEee
Q 014962 176 QLRLAYSTTWPG---MVLAICPYL-DRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTR---FMIMLLTAHFTRIAVGD 247 (415)
Q Consensus 176 ~L~l~~~~~~~g---~V~al~~~~-g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~---~~i~sI~~~~n~IlVGD 247 (415)
+++.-....++| .|+++.--. .++|| ++...+|+||+---.++. .....+ .+.......+++|.+|-
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----HAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----eEEecCceeEEEEEECCCCCeEEecC
Confidence 444444455554 577777443 35354 346778999987643321 111112 14555667899999999
Q ss_pred cCCcEEEEEEEcc-CCeEEEEecCC--CcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 248 CRDGILFYSYHED-ARKLEQIYCDP--SQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 248 ~~~Sv~ll~y~~~-~~~L~~varD~--~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
+-.=.++|..... ......+.|.. +...+++|.|+|+..+|.+-.+.-......+
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE 174 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc
Confidence 9887777777632 23334444443 3558899999998888887666555555543
No 87
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.29 E-value=17 Score=39.90 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=96.5
Q ss_pred eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCC
Q 014962 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS 122 (415)
Q Consensus 43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~ 122 (415)
+..|-|++..+++... +..+-.+.+++++++. .++.++|.||+ +||+-+|.+.+
T Consensus 54 ~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs-~~e~lvAagt~----------------~g~V~v~ql~~-------- 107 (726)
T KOG3621|consen 54 AGSVYLYNRHTGEMRK-LKNEGATGITCVRSVS-SVEYLVAAGTA----------------SGRVSVFQLNK-------- 107 (726)
T ss_pred cceEEEEecCchhhhc-ccccCccceEEEEEec-chhHhhhhhcC----------------CceEEeehhhc--------
Confidence 4567778777665432 2333345555444432 24578888887 79999999983
Q ss_pred ccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEec--CCceEEEeeeC-Cce
Q 014962 123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTW--PGMVLAICPYL-DRY 199 (415)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~--~g~V~al~~~~-g~y 199 (415)
.+| ..+.++...+. +--|+|++--. |+-
T Consensus 108 ----------------------------------~~p---------------~~~~~~t~~d~~~~~rVTal~Ws~~~~k 138 (726)
T KOG3621|consen 108 ----------------------------------ELP---------------RDLDYVTPCDKSHKCRVTALEWSKNGMK 138 (726)
T ss_pred ----------------------------------cCC---------------CcceeeccccccCCceEEEEEecccccE
Confidence 112 14555555555 67799999553 432
Q ss_pred EEEEe-CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc--ee
Q 014962 200 FLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR--LV 276 (415)
Q Consensus 200 Ll~~v-g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~--~v 276 (415)
|..|= -.+|..-.+.....-+............|+.|+....+++|..+.+++-+ +.+..++..|++-+... ..
T Consensus 139 ~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc---~tE~eti~QIG~k~R~~~~~~ 215 (726)
T KOG3621|consen 139 LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC---QTEAETITQIGKKPRKSLIDF 215 (726)
T ss_pred EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhhee---ecchhHHHHhcCCCcCCcccc
Confidence 55542 23344444443000001111122334579999999999999999999844 45555677777766665 44
Q ss_pred EEEEeee
Q 014962 277 ADCVLMD 283 (415)
Q Consensus 277 ta~~~Ld 283 (415)
-||.|-.
T Consensus 216 GACF~~g 222 (726)
T KOG3621|consen 216 GACFFPG 222 (726)
T ss_pred ceEEeec
Confidence 5555543
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.19 E-value=11 Score=40.86 Aligned_cols=112 Identities=8% Similarity=0.066 Sum_probs=76.5
Q ss_pred CCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962 186 PGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (415)
Q Consensus 186 ~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~ 263 (415)
+.+||+++.-+...++++ ..+.|++|+... .+++.+..-+..+..+.-+...|.+++-|-.---+-++....+.-.
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 456888885544335554 334489999986 3445555556667778888888999999888777777776654433
Q ss_pred EEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 264 L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~ 301 (415)
...++-+ ...|...+. -+.+.+..+|++|||+.-.+
T Consensus 249 ~T~~vH~-e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 249 ATYIVHK-EGVWALQSS-PSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eeEEecc-CceEEEeeC-CCcceEEecCCCCcEEeccc
Confidence 4433333 447877776 24568999999999987664
No 89
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=84.13 E-value=26 Score=35.25 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=38.9
Q ss_pred EEEEeCCCCcEEEEEe-CCCCCeEEEEEEEEECC-eeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 46 ICCVDPLSGSVLSSFK-LELGETGKSMELVRVGH-EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 46 i~l~d~~t~~~i~s~~-l~~~E~~~si~~~~l~~-~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
|++.|.-|++.-.+|. .+.-+++++..++.|.. .++|..|= +-.|.+|.+.+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-----------------krcirvFdt~R 188 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-----------------KRCIRVFDTSR 188 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-----------------cceEEEeeccC
Confidence 9999999999888877 44558888888888874 46777672 23577888863
No 90
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.05 E-value=49 Score=33.18 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCcEEEEEeCCC
Q 014962 44 SDICCVDPLSGSVLSSFKLEL 64 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~~ 64 (415)
..|..+|+.+++.+.++++..
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~ 95 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDE 95 (377)
T ss_pred CeEEEEEccCCcEeeeecCCC
Confidence 458889999999999888875
No 91
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.23 E-value=4.7 Score=38.12 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=47.5
Q ss_pred eEEEEEEEecCCce--EEEeeeCCceEEEEeCCeEEEEeeCCCCc--cceeeee------eeccceEEEEEEEeCCEEEE
Q 014962 176 QLRLAYSTTWPGMV--LAICPYLDRYFLASAGNAFYVCGFPNDNP--QRVRRFA------VGRTRFMIMLLTAHFTRIAV 245 (415)
Q Consensus 176 ~L~l~~~~~~~g~V--~al~~~~g~yLl~~vg~~l~v~~~~~~~~--~~L~~~a------~~~~~~~i~sI~~~~n~IlV 245 (415)
.++.+ +-+.+.++ .|.|+..|. ||+|.++++.+|.++...- ..+.-.. .+...+.+..+..++++|.+
T Consensus 125 qleii-ElPl~~~p~ciaCC~~tG~-LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~ 202 (215)
T PF14761_consen 125 QLEII-ELPLSEPPLCIACCPVTGN-LLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAV 202 (215)
T ss_pred ceEEE-EecCCCCCCEEEecCCCCC-EEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEE
Confidence 35555 45666554 455688999 9999999999999985210 1111112 22334568888889999988
Q ss_pred eecCC
Q 014962 246 GDCRD 250 (415)
Q Consensus 246 GD~~~ 250 (415)
-+-.+
T Consensus 203 ~s~~e 207 (215)
T PF14761_consen 203 MSDLE 207 (215)
T ss_pred ecCCE
Confidence 65443
No 92
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=83.15 E-value=12 Score=39.09 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=76.8
Q ss_pred CCceEEEeee-CCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc-CC
Q 014962 186 PGMVLAICPY-LDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED-AR 262 (415)
Q Consensus 186 ~g~V~al~~~-~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~-~~ 262 (415)
+--|++|.-- .|-.|+.| -+..+++|+... .++..+.+++.|++..+=.-.|++|+-|+.-+-..++.-... ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 3558888844 35523334 345578888764 467777888888766666678899999999888866643222 12
Q ss_pred eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCCCcC
Q 014962 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLE 306 (415)
Q Consensus 263 ~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~~~ 306 (415)
+-.+++.-+ ...++-.+++.|..++.+|-|+|+++..+.+
T Consensus 312 q~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 312 QQFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred EeeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCCc
Confidence 222222221 3456667889999999999999999877544
No 93
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=83.07 E-value=16 Score=34.86 Aligned_cols=67 Identities=7% Similarity=0.059 Sum_probs=44.4
Q ss_pred ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEE
Q 014962 198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQI 267 (415)
Q Consensus 198 ~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~v 267 (415)
++|++++..+|.+|+|..+..+..+....+..+-.+.+|...++.|+||. .++..++..+ ++....+
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~~idl~--~~~~~~l 172 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFYLIDLN--TGSPSEL 172 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceEEEecC--CCCceEE
Confidence 55899999999999998742111022233555667888888899999998 5556555554 3444444
No 94
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=82.42 E-value=11 Score=40.47 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=61.6
Q ss_pred CcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEE-EEeCCCCCeEEEEEEEEECCee
Q 014962 2 VHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS-SFKLELGETGKSMELVRVGHEQ 80 (415)
Q Consensus 2 ~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~-s~~l~~~E~~~si~~~~l~~~~ 80 (415)
+.+|+..+.+|||+..+..-+.+|+...++++|.|- +|.|+|..+..+.. ..+|. -....| -.+..
T Consensus 246 ~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-------SiiLyD~~~~~t~~~ka~~~-----P~~iaW-Hp~ga 312 (545)
T PF11768_consen 246 NKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-------SIILYDTTRGVTLLAKAEFI-----PTLIAW-HPDGA 312 (545)
T ss_pred CceeEEEEEEEecCCcceEEecCcccceEEEEecCC-------eEEEEEcCCCeeeeeeeccc-----ceEEEE-cCCCc
Confidence 357889999999999999999999999999998664 69999997764331 11221 112222 13558
Q ss_pred EEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 81 ~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
+|+||.. +|.|..|++.
T Consensus 313 i~~V~s~----------------qGelQ~FD~A 329 (545)
T PF11768_consen 313 IFVVGSE----------------QGELQCFDMA 329 (545)
T ss_pred EEEEEcC----------------CceEEEEEee
Confidence 9999954 8999999998
No 95
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=82.41 E-value=14 Score=37.82 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCceEEEEeCCe-EEEEeeCCCCc--cceeeeeeeccceEEEEEEEeCCEEEEeecCCcE-EEEEEEccCCeEEEEecCC
Q 014962 196 LDRYFLASAGNA-FYVCGFPNDNP--QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI-LFYSYHEDARKLEQIYCDP 271 (415)
Q Consensus 196 ~g~yLl~~vg~~-l~v~~~~~~~~--~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv-~ll~y~~~~~~L~~varD~ 271 (415)
.|++|.++.+.+ .+++.+...++ +++...++-. ...+.+.......++|+|-..=+ .+-.+........++....
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv 151 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV 151 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence 467556677777 45888875432 2333323322 33444555566678888865433 2223332223333332221
Q ss_pred CcceeEEEEee-eCCeEEEeCCCCcEEEEecCCC
Q 014962 272 SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 272 ~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~~ 304 (415)
.-++++.+. |+..+|.+|+++.|++.++|..
T Consensus 152 --Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 152 --SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT 183 (390)
T ss_pred --hhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence 123444544 4458999999999999999874
No 96
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=82.34 E-value=31 Score=35.46 Aligned_cols=112 Identities=9% Similarity=0.137 Sum_probs=76.7
Q ss_pred CceEEEeee--CCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962 187 GMVLAICPY--LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (415)
Q Consensus 187 g~V~al~~~--~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~ 263 (415)
++|.++. | .|++|+-+.|.. +++|++.-.. -+..+--++.=...++....+..|+-|..--++.+ |++..++
T Consensus 116 e~Vl~~~-fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~ 190 (480)
T KOG0271|consen 116 EAVLSVQ-FSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQ 190 (480)
T ss_pred CcEEEEE-ecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCC
Confidence 5666654 3 355577777765 7899997532 13343344443455566678888888888888854 6787777
Q ss_pred EEEEecCCCcceeEEEEe----eeC--CeEEEeCCCCcEEEEecCC
Q 014962 264 LEQIYCDPSQRLVADCVL----MDV--DTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 264 L~~varD~~~~~vta~~~----Ld~--d~~l~aD~~gNl~vl~~~~ 303 (415)
.+--+--.+..|+++..+ ++. ..+..+-++|++++.....
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 666666667889998885 333 3678888899999998654
No 97
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=82.01 E-value=63 Score=32.95 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred EEEEeCCCccCEEEEecCCCEEEEEEEee---CCCcceeeEEEEeCCCCcEEEEEeCCCC
Q 014962 9 VRKFHLGGTPKKVLYHSESRLLIVMRTEL---NNDTCSSDICCVDPLSGSVLSSFKLELG 65 (415)
Q Consensus 9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~---~~~~~~s~i~l~d~~t~~~i~s~~l~~~ 65 (415)
+..||.+..||-+ .+|+.+.+.|+++-. .-++..-.|.++|..|.+.+..+.+++.
T Consensus 40 ~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 40 LGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred EEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 4789999999986 999999988887632 2244456799999999999999998766
No 98
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.95 E-value=44 Score=36.92 Aligned_cols=113 Identities=8% Similarity=0.075 Sum_probs=71.9
Q ss_pred CCceEEEeeeC--CceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEcc
Q 014962 186 PGMVLAICPYL--DRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 186 ~g~V~al~~~~--g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
++-|+.|+-++ ..+|++|.|.. +.+|+......+.++. -.+ .+.+++ ..|.+|+-|---+|+-|+|++..
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G--H~e---~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG--HTE---AVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC--chh---heeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 45566777554 14488888876 8899776543332221 111 477777 45668888888899999999766
Q ss_pred CCeEEEEecCC-CcceeEEEEee--eCCeEEEeCCCCcEEEEecCC
Q 014962 261 ARKLEQIYCDP-SQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 261 ~~~L~~varD~-~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~~~ 303 (415)
..++..+|.-. ....|+++.+- ...-++.+-.++-|-+..++.
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 66666665543 34456666652 223456666777777777665
No 99
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.93 E-value=13 Score=40.10 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=76.9
Q ss_pred eeEEEEeCCC--ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEe--CCCCcEEEEEeCCCCCeEEEEEEEEECCe-eE
Q 014962 7 LNVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLSGSVLSSFKLELGETGKSMELVRVGHE-QV 81 (415)
Q Consensus 7 ~~i~~i~L~~--tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d--~~t~~~i~s~~l~~~E~~~si~~~~l~~~-~~ 81 (415)
...|||.+.+ +|.-|+|+|..++.+|+..- ...|.++. +.+.--++.++|+.+|+...+|.. .++ =.
T Consensus 328 T~trKV~IPGILvPDliAfn~kaq~VAVASNT------cn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFl--tdklLL 399 (671)
T PF15390_consen 328 TTTRKVSIPGILVPDLIAFNPKAQVVAVASNT------CNIILVYSVTPSSMPNIQQIQLESNERPKGICFL--TDKLLL 399 (671)
T ss_pred EEeeeeccccccccceeeeCCcCCEEEEEecC------CcEEEEEEeccccCCCeeEEEcccCCCCceeeEc--cCCeEE
Confidence 4568888888 99999999999999999622 22355544 566778899999999999988764 444 46
Q ss_pred EEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 82 LVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 82 lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
+.||--...++.++|..+...-.=|+.+.++.
T Consensus 400 ilVGkqK~td~aFLPSS~sd~Y~irL~vkEv~ 431 (671)
T PF15390_consen 400 ILVGKQKSTDPAFLPSSKSDKYIIRLMVKEVM 431 (671)
T ss_pred EEeccccCCCcccCCCCccccEEEEEEEEEee
Confidence 67898887788999987777777788887777
No 100
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.89 E-value=52 Score=31.89 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred EecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccC
Q 014962 183 TTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 183 ~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
.+.+..|.+|.-- +..++++ +-.+++.|++.. ..+.. ..+.-|...+++...+|..++|-+--++-|+ +++.
T Consensus 142 dea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~---G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLl--Dk~t 214 (307)
T KOG0316|consen 142 DEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRK---GTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLL--DKET 214 (307)
T ss_pred hhhcCceeEEEec-ccEEEeeccCCcEEEEEeec---ceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeec--ccch
Confidence 4567788887744 5425654 778899999986 23444 3444466666667788999999988888776 4556
Q ss_pred CeEEEEecCC-CcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 262 RKLEQIYCDP-SQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 262 ~~L~~varD~-~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
++|...-+-. +.-.=+.|.+...+ .++.+-.+|-+|++.+-+
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 6554433332 23344566777665 677778899999998654
No 101
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.76 E-value=11 Score=38.57 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=65.1
Q ss_pred eeeEEEEeCCCCc-EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCC
Q 014962 43 SSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCG 121 (415)
Q Consensus 43 ~s~i~l~d~~t~~-~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 121 (415)
-+.+|++|+.... .+.+|.|. |.+.+.. -.+.+..+|++|++ +|-+-.|++..
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~--E~~is~~-~l~p~gn~Iy~gn~----------------~g~l~~FD~r~------- 278 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFL--ENPISST-GLTPSGNFIYTGNT----------------KGQLAKFDLRG------- 278 (412)
T ss_pred ceeEEEecCcccCcceeEeccc--cCcceee-eecCCCcEEEEecc----------------cchhheecccC-------
Confidence 3579999998875 77877776 5554432 22345578888876 55666666662
Q ss_pred CccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCC-ceE
Q 014962 122 SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLD-RYF 200 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g-~yL 200 (415)
.+|--..-..+.|.+.+|.-..+ + +
T Consensus 279 -----------------------------------------------------~kl~g~~~kg~tGsirsih~hp~~~-~ 304 (412)
T KOG3881|consen 279 -----------------------------------------------------GKLLGCGLKGITGSIRSIHCHPTHP-V 304 (412)
T ss_pred -----------------------------------------------------ceeeccccCCccCCcceEEEcCCCc-e
Confidence 13333334667888999887766 5 7
Q ss_pred EEEeCCe--EEEEeeCCCCccceee
Q 014962 201 LASAGNA--FYVCGFPNDNPQRVRR 223 (415)
Q Consensus 201 l~~vg~~--l~v~~~~~~~~~~L~~ 223 (415)
|+++|=. |+||+.+. .++|.+
T Consensus 305 las~GLDRyvRIhD~kt--rkll~k 327 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKT--RKLLHK 327 (412)
T ss_pred EEeeccceeEEEeeccc--chhhhh
Confidence 7776654 77888875 355554
No 102
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.58 E-value=9.6 Score=40.89 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=72.9
Q ss_pred EEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC----eEEEEec-CC---
Q 014962 200 FLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR----KLEQIYC-DP--- 271 (415)
Q Consensus 200 Ll~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~----~L~~var-D~--- 271 (415)
+++|.|..||-+++.+ .+.|...+.--....+++|.....+|.+|..--.|-|+ ++-.. .|..... +.
T Consensus 149 y~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred EEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEe--cchhhhhheeeecccccCCCcc
Confidence 7899999999999987 46788777665677888999899999999988777665 33222 2222111 11
Q ss_pred --CcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962 272 --SQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 272 --~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~ 302 (415)
....|||+.|=|+. ++.++-+.|.++++.+-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 23459999998766 88999999999988753
No 103
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=81.56 E-value=55 Score=34.81 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEEecCCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962 180 AYSTTWPGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY 257 (415)
Q Consensus 180 ~~~~~~~g~V~al~~~~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y 257 (415)
+|+-+..|. |+++.+.. |+++|| .+|++|+.+. +.+.++-.+..|+..+....+|-++++|...-=+.+|..
T Consensus 206 ~HsAP~~gi--cfspsne~-l~vsVG~Dkki~~yD~~s---~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 206 AHSAPCRGI--CFSPSNEA-LLVSVGYDKKINIYDIRS---QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred hccCCcCcc--eecCCccc-eEEEecccceEEEeeccc---ccccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 455544443 45588888 888877 5688999884 567777788889988888889999999988887765554
Q ss_pred EccCCeEEEEecCCCcceeEEEEeeeC
Q 014962 258 HEDARKLEQIYCDPSQRLVADCVLMDV 284 (415)
Q Consensus 258 ~~~~~~L~~varD~~~~~vta~~~Ld~ 284 (415)
+..+.-+.. +......|+++.|-..
T Consensus 280 R~~k~Pv~v--~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 280 RSTKAPVAV--RSAHDASVTRVAFQPS 304 (673)
T ss_pred ccCCCCceE--eeecccceeEEEeeec
Confidence 433322222 2222334777776433
No 104
>PHA02713 hypothetical protein; Provisional
Probab=81.43 E-value=66 Score=34.76 Aligned_cols=81 Identities=10% Similarity=-0.028 Sum_probs=52.2
Q ss_pred eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC---------------------cEEEEEEEccCCeE
Q 014962 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---------------------GILFYSYHEDARKL 264 (415)
Q Consensus 207 ~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~---------------------Sv~ll~y~~~~~~L 264 (415)
.+..|++.. ..+...+....+..-..+.+.+++|+| |-... .-.+..|+++.++-
T Consensus 368 sve~Ydp~~---~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 368 TIECYTMGD---DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred eEEEEECCC---CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 477888875 335555544444344455567787776 43211 23478999999999
Q ss_pred EEEecCCCcceeEEEEeeeCCeEEEe
Q 014962 265 EQIYCDPSQRLVADCVLMDVDTAVVS 290 (415)
Q Consensus 265 ~~varD~~~~~vta~~~Ld~d~~l~a 290 (415)
..++.=..+|.-.++..+++.-++.+
T Consensus 445 ~~v~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 445 ETLPNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred eecCCCCcccccCcEEEECCEEEEEe
Confidence 98887667776667777777755544
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=80.52 E-value=41 Score=35.27 Aligned_cols=116 Identities=9% Similarity=0.092 Sum_probs=75.2
Q ss_pred EecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCC-EEEEeecCCcEEEEEEEc
Q 014962 183 TTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT-RIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 183 ~~~~g~V~al~~~~g--~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n-~IlVGD~~~Sv~ll~y~~ 259 (415)
.+..+++++|.=..+ -.|+++.+..+.+|.+...-..+|...-+-+.|+....+...|. .|+.+-- .=+++.|+-
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysyDl 287 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSYDL 287 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc--ceEEEEeec
Confidence 344588888874444 22567889999999997532346777666677777777777887 6665543 345789998
Q ss_pred cCCeEEEEecCCCcc--eeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962 260 DARKLEQIYCDPSQR--LVADCVLM-DVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 260 ~~~~L~~varD~~~~--~vta~~~L-d~d~~l~aD~~gNl~vl~ 300 (415)
+..++..+.+=+..- .+-.-+.- |...++.+-.+|-|++|.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 888888776544322 22222222 233556667788888876
No 106
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=11 Score=37.67 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCeEEEEEEEEEC--CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 64 LGETGKSMELVRVG--HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 64 ~~E~~~si~~~~l~--~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
.++...+..++... .+++|+|| ..|+.+-.++.++|+..+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvg-----------s~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVG-----------SDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred cccCcceEEeeccccccCceEEEE-----------cccCCccccceEEEEecC
Confidence 45555555566544 36999999 455778899999999994
No 107
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.87 E-value=9.2 Score=41.01 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=61.9
Q ss_pred EeCCCccCEEEEecC-CCEEEEEEEeeC------------C----------------------CcceeeEEEEeCCCCcE
Q 014962 12 FHLGGTPKKVLYHSE-SRLLIVMRTELN------------N----------------------DTCSSDICCVDPLSGSV 56 (415)
Q Consensus 12 i~L~~tp~~I~y~~~-~~~~~v~~~~~~------------~----------------------~~~~s~i~l~d~~t~~~ 56 (415)
+.+....|-++||.. -.+|++++.... + +...+.+++.||.+-+.
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 445567788999865 557777753321 0 34568899999998887
Q ss_pred EEEEeCCCC-------CeEEEEEEEEECCe-eEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 57 LSSFKLELG-------ETGKSMELVRVGHE-QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 57 i~s~~l~~~-------E~~~si~~~~l~~~-~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
+.+++...+ ...-++..+.|.++ =.++|||+ .|.+|+|++..
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----------------~G~v~iyDLRa 259 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----------------TGSVLIYDLRA 259 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeecc----------------CCcEEEEEccc
Confidence 777766554 23345788888874 67889988 68899999993
No 108
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.40 E-value=1.4e+02 Score=34.35 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=92.0
Q ss_pred eEEEEEEEecC--CceEEEeee--C---CceEEEEe-----------CCeEEEEeeCCCCccceeeeeeeccceEEEEEE
Q 014962 176 QLRLAYSTTWP--GMVLAICPY--L---DRYFLASA-----------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT 237 (415)
Q Consensus 176 ~L~l~~~~~~~--g~V~al~~~--~---g~yLl~~v-----------g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~ 237 (415)
.++.+|.+++. -.+++|+.. . +.|+++|. ..+++||++.+. +.|+.++.....-.+.+|.
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~--~~L~~v~e~~v~Gav~aL~ 836 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL--NSLELVAETVVKGAVYALV 836 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC--Cceeeeeeeeeccceeehh
Confidence 56777766664 446666632 1 45677765 356788888873 3477777777666788888
Q ss_pred EeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccc
Q 014962 238 AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLT 316 (415)
Q Consensus 238 ~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~ 316 (415)
..++++++| +-.+|.+++|-.+ +.|..-|+-..+ +++...- -.|.+++||--+.+.+|.+.... ..+.
T Consensus 837 ~fngkllA~-In~~vrLye~t~~-~eLr~e~~~~~~--~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e-------g~f~ 905 (1096)
T KOG1897|consen 837 EFNGKLLAG-INQSVRLYEWTTE-RELRIECNISNP--IIALDLQVKGDEIAVGDLMRSITLLQYKGDE-------GNFE 905 (1096)
T ss_pred hhCCeEEEe-cCcEEEEEEcccc-ceehhhhcccCC--eEEEEEEecCcEEEEeeccceEEEEEEeccC-------CceE
Confidence 888887665 7889999999764 345444444333 4444443 45789999999999999986521 2355
Q ss_pred eeeeeecCccccE
Q 014962 317 PNCAYHMGEIAVS 329 (415)
Q Consensus 317 ~~~~fhlGd~Vt~ 329 (415)
..|....+.-.++
T Consensus 906 evArD~~p~Wmta 918 (1096)
T KOG1897|consen 906 EVARDYNPNWMTA 918 (1096)
T ss_pred EeehhhCccceee
Confidence 5555554444333
No 109
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.00 E-value=8.5 Score=42.65 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=56.0
Q ss_pred EEEEEEEe----CCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC-------eEEEeCCCCcEEEEe
Q 014962 232 MIMLLTAH----FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-------TAVVSDRKGSIAVLS 300 (415)
Q Consensus 232 ~i~sI~~~----~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d-------~~l~aD~~gNl~vl~ 300 (415)
.+..|+.. -.+|+||+=.++|+++.|...+.++..........-+-++.|++++ .++++|..||+++++
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 45556654 5689999999999999999876666665555677788999999764 577899999999998
Q ss_pred c
Q 014962 301 C 301 (415)
Q Consensus 301 ~ 301 (415)
.
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 110
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=75.97 E-value=64 Score=33.35 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=35.2
Q ss_pred cCCcEEEEEEEccCCeEEEEecCCCc------ceeEEEEeeeCCeEEEeCCCCcEEEEecCCC
Q 014962 248 CRDGILFYSYHEDARKLEQIYCDPSQ------RLVADCVLMDVDTAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~------~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~~ 304 (415)
++++..=+-|+--...+-.+--|.++ .-+-+|.|+++.+++.+-.+.||++.++|..
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCC
Confidence 33444434444333333334444333 2345788898888888888899999998874
No 111
>PLN02153 epithiospecifier protein
Probab=75.38 E-value=91 Score=31.01 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=24.2
Q ss_pred EEEEEEccCCeEEEEec---CCCcceeEEEEeeeCCeEE
Q 014962 253 LFYSYHEDARKLEQIYC---DPSQRLVADCVLMDVDTAV 288 (415)
Q Consensus 253 ~ll~y~~~~~~L~~var---D~~~~~vta~~~Ld~d~~l 288 (415)
.+..|+.+.++-..+.. -+.+|...++..+++.-++
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv 256 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII 256 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence 46788998888888764 2556766666666655333
No 112
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.59 E-value=12 Score=41.43 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=61.9
Q ss_pred ecCCceEEEeeeCCceEEEEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962 184 TWPGMVLAICPYLDRYFLASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 184 ~~~g~V~al~~~~g~yLl~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
..+..|++++++.+. ++.|||- .|.+|++..+ ..+-...-++....+...+-.|.+++-|-.-..+.++-.-.+
T Consensus 63 ~~k~evt~l~~~~d~-l~lAVGYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDI-LLLAVGYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred cccceEEEeeccCCc-ceEEEEecCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 344789999999998 7666664 4889999863 222222334544444455556777777777777766665555
Q ss_pred CCeEEEEe-cCCCcceeEEEEeeeCCeEEEe
Q 014962 261 ARKLEQIY-CDPSQRLVADCVLMDVDTAVVS 290 (415)
Q Consensus 261 ~~~L~~va-rD~~~~~vta~~~Ld~d~~l~a 290 (415)
.+.+.+-+ +| .+|.+-|+.++.++++
T Consensus 140 ~Gl~rL~GHkd----~iT~~~F~~~~~~lvS 166 (888)
T KOG0306|consen 140 EGLFRLRGHKD----SITQALFLNGDSFLVS 166 (888)
T ss_pred eeeEEeecchH----HHhHHhccCCCeEEEE
Confidence 55555554 44 5555556654444333
No 113
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.59 E-value=56 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.6
Q ss_pred eCCCCCeEEEEEEEEEC---CeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 61 KLELGETGKSMELVRVG---HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 61 ~l~~~E~~~si~~~~l~---~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
.|.-|..++|++.-.|+ +.+.|+|||.. .|++|++.+
T Consensus 43 ~LNin~~italaaG~l~~~~~~D~LliGt~t-----------------~llaYDV~~ 82 (136)
T PF14781_consen 43 FLNINQEITALAAGRLKPDDGRDCLLIGTQT-----------------SLLAYDVEN 82 (136)
T ss_pred EEECCCceEEEEEEecCCCCCcCEEEEeccc-----------------eEEEEEccc
Confidence 35557899999999996 35899999884 479999983
No 114
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=72.99 E-value=67 Score=35.41 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=78.6
Q ss_pred EeCCC-ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEeeecC
Q 014962 12 FHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLS 89 (415)
Q Consensus 12 i~L~~-tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT~~~ 89 (415)
+.-+- .|..|.-+.-.+..+| ...++++.+-|......-....|+.++.+..+.=...++ ...++||-..
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V-------~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~- 96 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVV-------DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH- 96 (631)
T ss_pred EecCCCCcceEeecccCcEEEE-------ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc-
Confidence 34443 5666655553333333 133567899998888877888888888887775555554 4688888542
Q ss_pred CCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccc
Q 014962 90 SGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (415)
Q Consensus 90 ~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (415)
++++|.-.+ |.| . +..|
T Consensus 97 ----------------~v~l~~Q~R----------------------~dy------~---------~~~p---------- 113 (631)
T PF12234_consen 97 ----------------HVLLYTQLR----------------------YDY------T---------NKGP---------- 113 (631)
T ss_pred ----------------EEEEEEccc----------------------hhh------h---------cCCc----------
Confidence 445544331 111 0 0112
Q ss_pred cccccc-eEEEEEEEe-cCCceEEEeeeCCceEEEEeCCeEEEEeeCC
Q 014962 170 EETETW-QLRLAYSTT-WPGMVLAICPYLDRYFLASAGNAFYVCGFPN 215 (415)
Q Consensus 170 ~~~~~~-~L~l~~~~~-~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~ 215 (415)
.| .++-+.-.+ ...+|...+-..+.+|++|.||.++||+---
T Consensus 114 ----~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 114 ----SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWL 157 (631)
T ss_pred ----ccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCc
Confidence 11 233332223 4588999998887779999999999996543
No 115
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.18 E-value=75 Score=33.26 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=75.9
Q ss_pred cCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962 185 WPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (415)
Q Consensus 185 ~~g~V~al~~~~-g~yLl~~-vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~ 262 (415)
-.-.|..++-.. |++|+.+ ...++.+|+...+ ...++...-+....+.+.....+++|+.|+.-.+|.++.... +
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~ 278 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--G 278 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--C
Confidence 345577777554 5645543 4445889999442 234555555555556666667889999999999997766543 4
Q ss_pred eEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEecCCC
Q 014962 263 KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 263 ~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~~ 304 (415)
++...-.. +.-.++++.|= |...++.++.+|.|.++.....
T Consensus 279 ~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 279 ECVRKLKG-HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred eEEEeeec-cCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 44444333 23378888875 4457788888999999986543
No 116
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=71.73 E-value=80 Score=33.66 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=49.6
Q ss_pred EEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecC
Q 014962 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLS 89 (415)
Q Consensus 10 ~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~ 89 (415)
=+++=+...|.+-|||..+.+.+..++. +.|.|.|-.....+.. +.+-+.+=|.-+|--.-.+.|+|..++.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~------G~VtlwDv~g~sp~~~--~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDK------GAVTLWDVQGMSPIFH--ASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccC------CeEEEEeccCCCcccc--hhhhccCCcCcceecCCccceEEEeccc
Confidence 3445555678889999988887777665 3588888776655432 2222222222222223346666666655
Q ss_pred CCCCCCCCCCccccccEEEEEEEEe
Q 014962 90 SGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 90 ~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
. +|++|++..
T Consensus 231 k---------------ki~~yD~~s 240 (673)
T KOG4378|consen 231 K---------------KINIYDIRS 240 (673)
T ss_pred c---------------eEEEeeccc
Confidence 3 899999984
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.07 E-value=16 Score=37.11 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=73.2
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEee-cCCcEEEE
Q 014962 179 LAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGD-CRDGILFY 255 (415)
Q Consensus 179 l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD-~~~Sv~ll 255 (415)
.+|...-++.++.|.......+.+..|..|-+|+...+++ ++...+ ... .|.+++ .....|+.+. ..+|+.++
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P--v~smsw-G~D-ti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP--VSSMSW-GAD-SISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCc--cceeec-CCC-ceeEEecCCCcchheeeeccCCceEEE
Confidence 5677777888888887765447899999999999988654 444333 222 344444 3444555554 77899887
Q ss_pred EEEccC--CeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962 256 SYHEDA--RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 256 ~y~~~~--~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~ 300 (415)
--+... .++++--|-..-.|-- ....|.+|+.+.||+.+.
T Consensus 216 D~R~~~Pl~KVi~~mRTN~IswnP-----eafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 216 DLRQASPLKKVILTMRTNTICWNP-----EAFNFVAANEDHNLYTYD 257 (433)
T ss_pred ecccCCccceeeeeccccceecCc-----cccceeeccccccceehh
Confidence 655432 3444444443333332 223789999999999887
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.46 E-value=1.2e+02 Score=30.45 Aligned_cols=58 Identities=7% Similarity=0.063 Sum_probs=40.6
Q ss_pred eecCCcEEEEEEEccCCeEEEEecCCCc----------------ceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962 246 GDCRDGILFYSYHEDARKLEQIYCDPSQ----------------RLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 246 GD~~~Sv~ll~y~~~~~~L~~varD~~~----------------~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
--+.+=-++++|.++...|....++... ....++.|++.+.++++=.+++|.++..+.
T Consensus 165 ~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 165 LNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 3344444567888877778888777543 336678888888777777778988887653
No 119
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.68 E-value=97 Score=31.00 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=61.1
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~ 91 (415)
|||..-.|-++.||.....++...++. ..+.++|+.+++.+..+.-+++.+...=.+..- +..++.. +
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRPG-----~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~Lyt--T---- 68 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRPG-----TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYT--T---- 68 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCCC-----cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEE--e----
Confidence 577778899999998777777776663 357889999999998888777776654333222 2244432 2
Q ss_pred CCCCCCCCccccccEEEEEEEE
Q 014962 92 PAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 92 ~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
+++-+..+|+|=+|+..
T Consensus 69 -----End~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 69 -----ENDYETGRGVIGVYDAA 85 (305)
T ss_pred -----ccccCCCcEEEEEEECc
Confidence 45567899999999998
No 120
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=68.94 E-value=1.7e+02 Score=31.56 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=64.8
Q ss_pred cCCceEEEeeeCC-ceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962 185 WPGMVLAICPYLD-RYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (415)
Q Consensus 185 ~~g~V~al~~~~g-~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~ 262 (415)
-.+.|+++. +.+ .+++- ++-..+.+|++.. .+.... ........+..+...+++++-+-+-..+.++ +..++
T Consensus 370 H~~~V~sl~-~~~~~~~~Sgs~D~~IkvWdl~~--~~~c~~-tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W--D~~~~ 443 (537)
T KOG0274|consen 370 HTGRVYSLI-VDSENRLLSGSLDTTIKVWDLRT--KRKCIH-TLQGHTSLVSSLLLRDNFLVSSSADGTIKLW--DAEEG 443 (537)
T ss_pred CcceEEEEE-ecCcceEEeeeeccceEeecCCc--hhhhhh-hhcCCcccccccccccceeEeccccccEEEe--ecccC
Confidence 568899884 444 32554 4555589999986 211111 2222233556666666666555555556554 55555
Q ss_pred eEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 263 ~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
.......-.....+++..+. ...++++=.+|.+.+..++.
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 55555444433444444443 56788888888888887654
No 121
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.17 E-value=1.5e+02 Score=30.42 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=67.8
Q ss_pred EecCCceEEEeee-CCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 183 TTWPGMVLAICPY-LDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 183 ~~~~g~V~al~~~-~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
..-.++|+|+.-- +.. |+|.=|.. =++|+.... ..+-.+.-++-......-...+.+++-||+--=|.+++-+.
T Consensus 61 ~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred hhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 5567889988744 445 55544433 478888752 33433344443444555556788999999987776666544
Q ss_pred cCCeEEEEecCCCcceeEEEEee--e--CCeEEEeCCCCcEEEEecCC
Q 014962 260 DARKLEQIYCDPSQRLVADCVLM--D--VDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~L--d--~d~~l~aD~~gNl~vl~~~~ 303 (415)
...+..+. ..+..++-| . ...+++++.+|++|+++.|.
T Consensus 138 g~~~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 138 GGEQWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred CceEEEee------cccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 32222221 122333333 1 23678899999999999886
No 122
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.06 E-value=1.5e+02 Score=30.33 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=46.0
Q ss_pred eeEEEEeCCCccCE-EEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962 7 LNVRKFHLGGTPKK-VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG 85 (415)
Q Consensus 7 ~~i~~i~L~~tp~~-I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVG 85 (415)
-.+++|+.+..++- +++.|+.+.+.|+. + .+.|.++|..+.+++.++.. ++.+.++..- .+..|++|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r------dg~vsviD~~~~~~v~~i~~--G~~~~~i~~s--~DG~~~~v~ 95 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVAN-R------DGTVSVIDLATGKVVATIKV--GGNPRGIAVS--PDGKYVYVA 95 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEE-T------TSEEEEEETTSSSEEEEEE---SSEEEEEEE----TTTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEc-C------CCeEEEEECCcccEEEEEec--CCCcceEEEc--CCCCEEEEE
Confidence 35789998886654 56789888777763 2 13699999999999998765 4455443321 355788888
Q ss_pred eec
Q 014962 86 TSL 88 (415)
Q Consensus 86 T~~ 88 (415)
...
T Consensus 96 n~~ 98 (369)
T PF02239_consen 96 NYE 98 (369)
T ss_dssp EEE
T ss_pred ecC
Confidence 653
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.51 E-value=1.4e+02 Score=31.76 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=39.4
Q ss_pred eeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEe
Q 014962 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 44 s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
.+|=|-+..++++....+|. .|.++|+.-. .+..+|+|||. .|.+.++++.+
T Consensus 197 ~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws--~~G~~LavG~~----------------~g~v~iwD~~~ 248 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG-EELVTSVKWS--PDGSHLAVGTS----------------DGTVQIWDVKE 248 (484)
T ss_pred ceEEEEecCCCceEEeEecC-CCceEEEEEC--CCCCEEEEeec----------------CCeEEEEehhh
Confidence 46777888888877777777 6777765442 23589999988 68999999984
No 124
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=67.28 E-value=1.7e+02 Score=30.91 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=60.4
Q ss_pred cCCceEEEeeeC--CceEEEEeCC--eEEEEeeCCCCc-cceeeeeeeccceEEEEEEE----------eCCEEEEeecC
Q 014962 185 WPGMVLAICPYL--DRYFLASAGN--AFYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTA----------HFTRIAVGDCR 249 (415)
Q Consensus 185 ~~g~V~al~~~~--g~yLl~~vg~--~l~v~~~~~~~~-~~L~~~a~~~~~~~i~sI~~----------~~n~IlVGD~~ 249 (415)
-.|.|.+|. ++ |. ||++... +|.+|..++++. +.|+. . .=-|+.|.- ..+.+++.-..
T Consensus 358 H~g~V~alk-~n~tg~-LLaS~SdD~TlkiWs~~~~~~~~~l~~--H---skei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 358 HHGEVNALK-WNPTGS-LLASCSDDGTLKIWSMGQSNSVHDLQA--H---SKEIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ccCceEEEE-ECCCCc-eEEEecCCCeeEeeecCCCcchhhhhh--h---ccceeeEeecCCCCccCCCcCCceEEEeec
Confidence 568888887 44 78 7776654 478888876432 01111 0 002333322 22455555555
Q ss_pred CcEEEEEEEccCCeEEEE-ecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 250 DGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
+|. +.-|+.+.+.-+.. -| ..--|+++.|..+. .++.++.+|-+.++..+.
T Consensus 431 dst-V~lwdv~~gv~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 431 DST-VKLWDVESGVPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred CCe-EEEEEccCCceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 554 33345444322222 12 23357888998654 677788899888877543
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=67.23 E-value=1.8e+02 Score=31.12 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=40.3
Q ss_pred ecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccce------------eeeeeeccceEEEEEEEeCCEEEEeecCC
Q 014962 184 TWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRV------------RRFAVGRTRFMIMLLTAHFTRIAVGDCRD 250 (415)
Q Consensus 184 ~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L------------~~~a~~~~~~~i~sI~~~~n~IlVGD~~~ 250 (415)
--+|.|+++|.+++..| ++ |.| =.+-.|+.+ -+.+ |.++..+.. .-|-+-.|+|+-|.+.+
T Consensus 285 aH~ggv~~L~~lr~Gtl-lS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTL-LS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFILQGTLEN 358 (626)
T ss_pred ecCCceEEEEEecCccE-ee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCc---EEEeeccceEEEeeecC
Confidence 56899999999987635 45 554 334444421 1122 222222222 22334567888888888
Q ss_pred cEEEEEEEc
Q 014962 251 GILFYSYHE 259 (415)
Q Consensus 251 Sv~ll~y~~ 259 (415)
++++..+-.
T Consensus 359 ~f~~~v~gh 367 (626)
T KOG2106|consen 359 GFTLTVQGH 367 (626)
T ss_pred CceEEEEec
Confidence 888776643
No 126
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=66.88 E-value=1.1e+02 Score=28.54 Aligned_cols=113 Identities=15% Similarity=0.008 Sum_probs=67.1
Q ss_pred EecCCceEEEee-eCCceEEEEeCCeEEEEeeCCCCccceeeeeee---c-cceEEEEEEEeC-CEEEEeecCCc-----
Q 014962 183 TTWPGMVLAICP-YLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG---R-TRFMIMLLTAHF-TRIAVGDCRDG----- 251 (415)
Q Consensus 183 ~~~~g~V~al~~-~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~---~-~~~~i~sI~~~~-n~IlVGD~~~S----- 251 (415)
....+++-.... -.|+ |+++....+.++++.. ..+...+.. . ....+..+.+.. +.|+++|....
T Consensus 37 ~~~~~~~G~~~~~~~g~-l~v~~~~~~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~ 112 (246)
T PF08450_consen 37 IDLPGPNGMAFDRPDGR-LYVADSGGIAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI 112 (246)
T ss_dssp EESSSEEEEEEECTTSE-EEEEETTCEEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG
T ss_pred EecCCCceEEEEccCCE-EEEEEcCceEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccc
Confidence 344556555555 3567 8999999999888765 223332322 1 345677776643 45999998654
Q ss_pred --EEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCc-EEEEecC
Q 014962 252 --ILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGS-IAVLSCS 302 (415)
Q Consensus 252 --v~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gN-l~vl~~~ 302 (415)
=.+++++.+ ++...+..+... ...+.+- |.+.++++|...+ |+.+.++
T Consensus 113 ~~g~v~~~~~~-~~~~~~~~~~~~--pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 113 DPGSVYRIDPD-GKVTVVADGLGF--PNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp GSEEEEEEETT-SEEEEEEEEESS--EEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceEEECCC-CeEEEEecCccc--ccceEECCcchheeecccccceeEEEecc
Confidence 257888887 777776655221 2223332 3346777877555 6666654
No 127
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.77 E-value=1.4e+02 Score=29.41 Aligned_cols=67 Identities=22% Similarity=0.413 Sum_probs=47.9
Q ss_pred EEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCC
Q 014962 20 KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGE 99 (415)
Q Consensus 20 ~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e 99 (415)
-++.-+++++++++.+.. .-+.-+|+.++.++..-.|...-++..+.+ ..++|+|.-
T Consensus 15 pLVV~~dskT~v~igSHs------~~~~avd~~sG~~~We~ilg~RiE~sa~vv-----gdfVV~GCy------------ 71 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHS------GIVIAVDPQSGNLIWEAILGVRIECSAIVV-----GDFVVLGCY------------ 71 (354)
T ss_pred cEEEecCCceEEEEecCC------ceEEEecCCCCcEEeehhhCceeeeeeEEE-----CCEEEEEEc------------
Confidence 356667888998887654 358889999999888666655444443332 256999966
Q ss_pred ccccccEEEEEEEE
Q 014962 100 AESTKGRLIVLCIE 113 (415)
Q Consensus 100 ~~~~~Gri~vf~i~ 113 (415)
+|.+|.+.++
T Consensus 72 ----~g~lYfl~~~ 81 (354)
T KOG4649|consen 72 ----SGGLYFLCVK 81 (354)
T ss_pred ----cCcEEEEEec
Confidence 6788998888
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.74 E-value=1.8e+02 Score=30.58 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=76.4
Q ss_pred CCceEEEeeeC-CceEEEEeC---CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeC-CEEEEeecCCcEEEEEEEcc
Q 014962 186 PGMVLAICPYL-DRYFLASAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF-TRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 186 ~g~V~al~~~~-g~yLl~~vg---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~-n~IlVGD~~~Sv~ll~y~~~ 260 (415)
.+.|.+|..+. ++ ++++| ..+++|++..+ .+ |...+. ...+-++.... +..+.|-.--++.|+..-..
T Consensus 286 qd~v~~IdaL~reR--~vtVGgrDrT~rlwKi~ee-sq-lifrg~---~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 286 QDGVLGIDALSRER--CVTVGGRDRTVRLWKIPEE-SQ-LIFRGG---EGSIDCVAFINDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred ccceeeechhcccc--eEEeccccceeEEEecccc-ce-eeeeCC---CCCeeeEEEecccceeeccCCceEEEeeeccc
Confidence 46788887774 45 56777 44899999654 23 333222 11222222222 23444544555555544332
Q ss_pred CC-eEEEEecCC--------CcceeEEEEeeeCC-eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962 261 AR-KLEQIYCDP--------SQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (415)
Q Consensus 261 ~~-~L~~varD~--------~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~ 330 (415)
.- ....+|--. .+.|++++..+-+. .++.+--+|++.+....++ -..+.....+-+--.||++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g-------~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG-------LRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC-------ccccceeeecccccEEEEE
Confidence 11 112222222 23499999998765 5555666999988886542 1357788888888899998
Q ss_pred E
Q 014962 331 R 331 (415)
Q Consensus 331 ~ 331 (415)
+
T Consensus 432 ~ 432 (479)
T KOG0299|consen 432 A 432 (479)
T ss_pred E
Confidence 6
No 129
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=65.64 E-value=1.5e+02 Score=29.46 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=74.1
Q ss_pred EEEecCCceEEEeeeCCceEE-EEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 181 YSTTWPGMVLAICPYLDRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 181 ~~~~~~g~V~al~~~~g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
|++.+.+.+.+ ..|.|.| ++--..+++|++... +.-+...-+.....-+++......|+-|---+++-++ +.
T Consensus 62 HsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw--nt 134 (315)
T KOG0279|consen 62 HSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW--NT 134 (315)
T ss_pred cceEecceEEc---cCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeee--ee
Confidence 66766665543 5565333 334456899999863 2233334444444455555566678888888888664 55
Q ss_pred cCCeEEEEecCCCcceeEEEEeeeC--C-eEEEeCCCCcEEEEecC
Q 014962 260 DARKLEQIYCDPSQRLVADCVLMDV--D-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~Ld~--d-~~l~aD~~gNl~vl~~~ 302 (415)
-......+++|....||+++-|... + .++.+--++-+-+..+.
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 5677788888877889999999744 2 56666666666666543
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.32 E-value=1.7e+02 Score=30.59 Aligned_cols=200 Identities=10% Similarity=0.111 Sum_probs=108.8
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCC
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~ 91 (415)
+....+.-.|.++|+.+.++.+..+. ++.|-|..|++....|.=..+-.+. ..+.+.+..-+|+|..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e-------~~~lwDv~tgd~~~~y~~~~~~S~~--sc~W~pDg~~~V~Gs~---- 332 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDE-------VLSLWDVDTGDLRHLYPSGLGFSVS--SCAWCPDGFRFVTGSP---- 332 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchH-------heeeccCCcchhhhhcccCcCCCcc--eeEEccCCceeEecCC----
Confidence 44445778889999987665553333 3889999998877655433222222 2233455555677743
Q ss_pred CCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccc
Q 014962 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (415)
Q Consensus 92 ~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (415)
.+.|+.++.+- .-+
T Consensus 333 ------------dr~i~~wdlDg----------------------------------------------------n~~-- 346 (519)
T KOG0293|consen 333 ------------DRTIIMWDLDG----------------------------------------------------NIL-- 346 (519)
T ss_pred ------------CCcEEEecCCc----------------------------------------------------chh--
Confidence 25666676661 000
Q ss_pred cccceEEEEEEEecCCceEEEe-eeCCceEE-EEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecC
Q 014962 172 TETWQLRLAYSTTWPGMVLAIC-PYLDRYFL-ASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR 249 (415)
Q Consensus 172 ~~~~~L~l~~~~~~~g~V~al~-~~~g~yLl-~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~ 249 (415)
+.|+-.-. -.|..|+ ...|+|++ +..-+++.+|.+.. ..=++.-...-++.-.+|.-.+.+++|-=.-
T Consensus 347 -~~W~gvr~------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~---~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 347 -GNWEGVRD------PKVHDLAITYDGKYVLLVTVDKKIRLYNREA---RVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred -hccccccc------ceeEEEEEcCCCcEEEEEecccceeeechhh---hhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 01221110 2245555 45677654 56788899999874 1112112222233344444455688888888
Q ss_pred CcEEEEEEEccCCeEEE-EecCCCcceeEEEEe--eeCCeEEEeCCCCcEEEEecC
Q 014962 250 DGILFYSYHEDARKLEQ-IYCDPSQRLVADCVL--MDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~-varD~~~~~vta~~~--Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
+.+.++.+. +++++. .-..-..+.+--..| .+++-++.+-.++.+++...-
T Consensus 417 qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 417 QEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred CeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 899888776 333321 122222333332223 233455556668888888743
No 131
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=63.95 E-value=25 Score=38.04 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=45.0
Q ss_pred ecCCceEEEeeeC-C-ceEEEEeCCeEEEEeeCCCCccceeeeee---eccceEEEEEEEeCC-EEEEee
Q 014962 184 TWPGMVLAICPYL-D-RYFLASAGNAFYVCGFPNDNPQRVRRFAV---GRTRFMIMLLTAHFT-RIAVGD 247 (415)
Q Consensus 184 ~~~g~V~al~~~~-g-~yLl~~vg~~l~v~~~~~~~~~~L~~~a~---~~~~~~i~sI~~~~n-~IlVGD 247 (415)
...|-|.|-|--. | | |++|+|+.|+-|=|++.+ +.|..|+| ++...+|.+|.+-.| .|.|+.
T Consensus 153 ~~~G~IhCACWT~DG~R-LVVAvGSsLHSyiWd~~q-KtL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQR-LVVAVGSSLHSYIWDSAQ-KTLHRCSFCPVFDVGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred cCCceEEEEEecCcCCE-EEEEeCCeEEEEEecCch-hhhhhCCcceeecCCCceEEEEEeccceEEEEe
Confidence 5568888888654 4 6 999999999999998754 45766554 355668999986544 566654
No 132
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=63.28 E-value=1.8e+02 Score=29.55 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=55.0
Q ss_pred eCCceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCc
Q 014962 195 YLDRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQ 273 (415)
Q Consensus 195 ~~g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~ 273 (415)
..|+ |.+ +-..+|+.++.... ..+++.... . .....+....+++|+++|.---+ +.++..++++.---+ ...
T Consensus 293 ~~~~-vy~~~~~g~l~ald~~tG-~~~W~~~~~-~-~~~~~sp~v~~g~l~v~~~~G~l--~~ld~~tG~~~~~~~-~~~ 365 (394)
T PRK11138 293 DGGR-IYLVDQNDRVYALDTRGG-VELWSQSDL-L-HRLLTAPVLYNGYLVVGDSEGYL--HWINREDGRFVAQQK-VDS 365 (394)
T ss_pred ECCE-EEEEcCCCeEEEEECCCC-cEEEccccc-C-CCcccCCEEECCEEEEEeCCCEE--EEEECCCCCEEEEEE-cCC
Confidence 4455 444 34556777776532 222322111 1 11223334568999999876544 446776665432211 111
Q ss_pred ceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 274 RLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 274 ~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
..+.+.-++.++.+++++.+|.|+.++.|
T Consensus 366 ~~~~s~P~~~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 366 SGFLSEPVVADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred CcceeCCEEECCEEEEEeCCceEEEEeCC
Confidence 12333334467789999999999998854
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.12 E-value=1.5e+02 Score=29.67 Aligned_cols=126 Identities=11% Similarity=0.024 Sum_probs=71.1
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEE
Q 014962 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILF 254 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~l 254 (415)
.-+.++..++++-|||+...... +++|.+.+ |.+|.|+++..+.-+..+-.+.+...+.+--.++.-++|-+--=+ .
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm-~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv-~ 223 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPM-AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV-A 223 (347)
T ss_pred CCCeeeeeeccceeeehhccCce-eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE-E
Confidence 34567888899999999988887 77776655 999999875322112223344444444444444444777654333 3
Q ss_pred EEEEcc---CCeEEEEe-cCCCc--ceeEE---EEee-eCCeEEEeCCCCcEEEEecCC
Q 014962 255 YSYHED---ARKLEQIY-CDPSQ--RLVAD---CVLM-DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 255 l~y~~~---~~~L~~va-rD~~~--~~vta---~~~L-d~d~~l~aD~~gNl~vl~~~~ 303 (415)
..|-.. ...|..-| |+..+ -.|.+ +.|. ...+++.+-.+|-+-++..+.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 333222 23444433 22111 12444 4443 346777777777766666544
No 134
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=62.64 E-value=53 Score=34.28 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=21.9
Q ss_pred EeCCCCCeEEEEEEEEEC---------CeeEEEEeee
Q 014962 60 FKLELGETGKSMELVRVG---------HEQVLVVGTS 87 (415)
Q Consensus 60 ~~l~~~E~~~si~~~~l~---------~~~~lvVGT~ 87 (415)
++.+++|.++|++.+-|. +..+|+|||+
T Consensus 51 l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~s 87 (415)
T PF14655_consen 51 LDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTS 87 (415)
T ss_pred ccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEec
Confidence 444555999999999982 3489999988
No 135
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.58 E-value=1.6e+02 Score=28.89 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=31.1
Q ss_pred eEEEEEEEecCCceEEEee--eCCceEEEEeCCe-EEEEeeCCC
Q 014962 176 QLRLAYSTTWPGMVLAICP--YLDRYFLASAGNA-FYVCGFPND 216 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~--~~g~yLl~~vg~~-l~v~~~~~~ 216 (415)
.++.+.+.+++++++.++- .....+++|.|.- |.+|+....
T Consensus 50 gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~ 93 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP 93 (311)
T ss_pred CeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC
Confidence 5778888999999999983 2333278888865 899998753
No 136
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.89 E-value=2.3e+02 Score=30.44 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=40.8
Q ss_pred EEEEEeCCEEEEeecC--------------CcEEEEEEEccCCeE----EEEecCCCcceeEEEE-eee----CC---eE
Q 014962 234 MLLTAHFTRIAVGDCR--------------DGILFYSYHEDARKL----EQIYCDPSQRLVADCV-LMD----VD---TA 287 (415)
Q Consensus 234 ~sI~~~~n~IlVGD~~--------------~Sv~ll~y~~~~~~L----~~varD~~~~~vta~~-~Ld----~d---~~ 287 (415)
.+++...++|++|.-. -|-+++..|.+.+++ ..+-.|.-...+.+.- ++| .. -+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 3666667788887622 145667777666533 4444444333332222 223 22 57
Q ss_pred EEeCCCCcEEEEecC
Q 014962 288 VVSDRKGSIAVLSCS 302 (415)
Q Consensus 288 l~aD~~gNl~vl~~~ 302 (415)
+.+++.|.+|+|...
T Consensus 319 ~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 319 AHADRNGFFYVLDRT 333 (527)
T ss_pred EEeCCCceEEEEECC
Confidence 799999999999853
No 137
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=61.55 E-value=1e+02 Score=26.19 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=29.9
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCccceee
Q 014962 178 RLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRR 223 (415)
Q Consensus 178 ~l~~~~~~~g~V~al~~~~g~yLl~~-vg~~l~v~~~~~~~~~~L~~ 223 (415)
+++++....+.|++|+.+.+..+..| .|..|-+|+-.. +++|.
T Consensus 34 e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~---RlWRi 77 (111)
T PF14783_consen 34 EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ---RLWRI 77 (111)
T ss_pred cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc---eeeee
Confidence 34777778889999999977546666 455677886653 44554
No 138
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=60.09 E-value=2.2e+02 Score=29.73 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=84.9
Q ss_pred EEEEEEecCCceEEEe--ee----CCceEEEEeCCeEEEEeeCCCCc-------cceeeeeeeccceEEEEEEE------
Q 014962 178 RLAYSTTWPGMVLAIC--PY----LDRYFLASAGNAFYVCGFPNDNP-------QRVRRFAVGRTRFMIMLLTA------ 238 (415)
Q Consensus 178 ~l~~~~~~~g~V~al~--~~----~g~yLl~~vg~~l~v~~~~~~~~-------~~L~~~a~~~~~~~i~sI~~------ 238 (415)
-++-+++++.||..|. .| ....|++=-=.+|.||.+...+. -.|...-.+..+..+.++..
T Consensus 63 ~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~ 142 (418)
T PF14727_consen 63 DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGV 142 (418)
T ss_pred cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCC
Confidence 4677899999999988 33 22313333344578898843111 12333333444445555543
Q ss_pred e-CCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEecCCCcCCCC-------
Q 014962 239 H-FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSDRLEDNA------- 309 (415)
Q Consensus 239 ~-~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~~~~~~~~~------- 309 (415)
. .++|.|=.+--.++|+. .+.-.|...=-| -.-...+.+.. -|.++.+.....|-.+++..-+...+
T Consensus 143 ~~~~~IcVQS~DG~L~~fe--qe~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~ 218 (418)
T PF14727_consen 143 KGRDFICVQSMDGSLSFFE--QESFAFSRFLPD--FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSG 218 (418)
T ss_pred CCceEEEEEecCceEEEEe--CCcEEEEEEcCC--CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccc
Confidence 1 25666644444444432 222222222111 11122333333 36889999888888888644322211
Q ss_pred -----CCCCccceeeeeecCccccEEEeece
Q 014962 310 -----SPECNLTPNCAYHMGEIAVSIRKGSF 335 (415)
Q Consensus 310 -----~~~~kL~~~~~fhlGd~Vt~~~~gsl 335 (415)
...+++...=.|.+||.+..|+-.+.
T Consensus 219 ~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~ 249 (418)
T PF14727_consen 219 TEQDISSGKKLNPDWSFNLGEQALDIQVVRF 249 (418)
T ss_pred ccccccccccccceeEEECCceeEEEEEEEc
Confidence 02368888889999999999986665
No 139
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=59.59 E-value=1.9e+02 Score=32.15 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCC----EEEEeecCCcEEEEEEEc
Q 014962 186 PGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT----RIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 186 ~g~V~al~~~~g~yLl~~vg--~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n----~IlVGD~~~Sv~ll~y~~ 259 (415)
++||.-|+--.+..|++..| +++.||++... -... .|-..+-.|.++.-.++ .++.|+.---+-++.++.
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~th-~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---YCTH-SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEeeCC---EEEE-EecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 56777777444442444333 44899999863 1222 45555667888876554 455666665565555542
Q ss_pred cCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEec
Q 014962 260 DARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~ 301 (415)
....+. +.+ -+...|++..|..+ .+++.+-++.-+.+.++
T Consensus 181 ~~tcl~-~~~-~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 181 KRTCLH-TMI-LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred CchHHH-HHH-hhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 221111 111 12345777777644 47777777766776665
No 140
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.09 E-value=28 Score=34.58 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=61.0
Q ss_pred ccCEEEEecCCCEEEEEE----EeeCC-------CcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEe
Q 014962 17 TPKKVLYHSESRLLIVMR----TELNN-------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG 85 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~----~~~~~-------~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVG 85 (415)
-|+-+..+++.++++|+- +.+.. .....++-|+|..|+++|..+.|++.-+-+|+.-+.++.+--|.-|
T Consensus 163 GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 163 GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 799999999999999982 33221 3556889999999999999999999999999999988877667778
Q ss_pred eecCC
Q 014962 86 TSLSS 90 (415)
Q Consensus 86 T~~~~ 90 (415)
.-|.-
T Consensus 243 cQy~G 247 (366)
T COG3490 243 CQYRG 247 (366)
T ss_pred EEeeC
Confidence 77653
No 141
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.64 E-value=22 Score=36.37 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=37.1
Q ss_pred eEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC
Q 014962 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (415)
Q Consensus 8 ~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~ 63 (415)
.+++|+.+..|+-|+.+++++.++|+.... ..+.++|..|.+.+..+...
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~------~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGKYVYVANYEP------GTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTTEEEEEEEET------TEEEEEETTT--EEEEEE--
T ss_pred EEEEEecCCCcceEEEcCCCCEEEEEecCC------CceeEeccccccceeecccc
Confidence 688999999999999999999998886443 47999999999988876643
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=57.30 E-value=64 Score=35.87 Aligned_cols=114 Identities=7% Similarity=0.069 Sum_probs=75.9
Q ss_pred CCceEEEeeeC-CceEE-EEeCCeEEEEeeCCCC-ccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962 186 PGMVLAICPYL-DRYFL-ASAGNAFYVCGFPNDN-PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (415)
Q Consensus 186 ~g~V~al~~~~-g~yLl-~~vg~~l~v~~~~~~~-~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~ 262 (415)
++-.|.|..=. -+|++ ++.-.+|.+|+.+... .+..+.--..+....=+.++..|.||+..-.-+-+.|+.|-..
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-- 673 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-- 673 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--
Confidence 45566666332 24233 3455569999998621 1112221222334456677788999999999999999988642
Q ss_pred eEEEEecCCCcc-eeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962 263 KLEQIYCDPSQR-LVADCVLMDV-DTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 263 ~L~~varD~~~~-~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~ 303 (415)
+.+|+=+... -||-+.|+.+ ..+|.+-.+|-|||+++|.
T Consensus 674 --EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 --ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 4556655544 4788889877 4899999999999999876
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=55.99 E-value=2.2e+02 Score=28.46 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=70.5
Q ss_pred EecCCceEEEeeeC------CceEEEEeCCeEEEEeeCCCCccceeeeeeec------cceEEEEEE---EeCCEEEEee
Q 014962 183 TTWPGMVLAICPYL------DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGR------TRFMIMLLT---AHFTRIAVGD 247 (415)
Q Consensus 183 ~~~~g~V~al~~~~------g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~------~~~~i~sI~---~~~n~IlVGD 247 (415)
.+.+.|++.+--.. -. |||..|..|++|+...++.+ +...+... .+-.+++.+ +.-++|.+.-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pd-lLATs~D~LRlWri~~ee~~-~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPD-LLATSSDFLRLWRIGDEESR-VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcc-hhhcccCeEEEEeccCcCCc-eehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 34555555554221 24 89999999999999854332 11111111 111344443 2347888888
Q ss_pred cCCcEEEEEEEccCC---eEEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEEec
Q 014962 248 CRDGILFYSYHEDAR---KLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 248 ~~~Sv~ll~y~~~~~---~L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl~~ 301 (415)
+-.-++++......- +-.++|-| ..|..+.|+-. +-|...-++|.+.+|.+
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHD---KEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHD---KEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecC---cceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 888887776655312 44667766 57889999864 46777778889888874
No 144
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=55.72 E-value=2.5e+02 Score=29.00 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=20.0
Q ss_pred CCceEEEeeeC-CceEEEEe-CCeEEEEeeCC
Q 014962 186 PGMVLAICPYL-DRYFLASA-GNAFYVCGFPN 215 (415)
Q Consensus 186 ~g~V~al~~~~-g~yLl~~v-g~~l~v~~~~~ 215 (415)
.|+|+|++.-+ |. +.+|- +..|.|+|++.
T Consensus 86 ~g~vtal~~S~iGF-vaigy~~G~l~viD~RG 116 (395)
T PF08596_consen 86 QGPVTALKNSDIGF-VAIGYESGSLVVIDLRG 116 (395)
T ss_dssp S-SEEEEEE-BTSE-EEEEETTSEEEEEETTT
T ss_pred CCcEeEEecCCCcE-EEEEecCCcEEEEECCC
Confidence 89999998644 55 66665 56788888865
No 145
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.84 E-value=2.4e+02 Score=28.47 Aligned_cols=121 Identities=16% Similarity=0.083 Sum_probs=74.7
Q ss_pred CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcce
Q 014962 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRL 275 (415)
Q Consensus 197 g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~ 275 (415)
|.|+++.+-++|-+|.++. .+.++...+ +-.+.++.. .++.++||---+-+.+ +|.+. .....-=+.++.-
T Consensus 180 Gd~F~v~~~~~i~i~q~d~--A~v~~~i~~---~~r~l~~~~l~~~~L~vG~d~~~i~~--~D~ds-~~~~~~~~AH~~R 251 (362)
T KOG0294|consen 180 GDHFVVSGRNKIDIYQLDN--ASVFREIEN---PKRILCATFLDGSELLVGGDNEWISL--KDTDS-DTPLTEFLAHENR 251 (362)
T ss_pred CCEEEEEeccEEEEEeccc--HhHhhhhhc---cccceeeeecCCceEEEecCCceEEE--eccCC-Cccceeeecchhh
Confidence 5458899999999999986 444433222 223444443 3667777655444433 34432 1111222334556
Q ss_pred eEEEEeeeC---CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEE
Q 014962 276 VADCVLMDV---DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR 331 (415)
Q Consensus 276 vta~~~Ld~---d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~ 331 (415)
|-++.+++. ..++.+-.+|-|.|..+.-+.. .+-...+++.+|..+|++.
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k------~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK------KRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccccc------CCcceeEEeecCCccceee
Confidence 667775544 2567778899999999765322 2455678999999999995
No 146
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.60 E-value=70 Score=35.32 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=68.5
Q ss_pred eCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc-CCeEEEEecCC-
Q 014962 195 YLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED-ARKLEQIYCDP- 271 (415)
Q Consensus 195 ~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~-~~~L~~varD~- 271 (415)
-.++||.+|.... ||+|.-... ..++.+.........+.+|.....++++|...-=|.++..+.. +..+..+..--
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~ 121 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK 121 (726)
T ss_pred cCCceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence 4577788876655 678876541 1223332333333445555566667777776665666655543 34455554433
Q ss_pred -CcceeEEEEee-eCCeEEEeCCCCcEEEEecCC
Q 014962 272 -SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 272 -~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~ 303 (415)
+++.|||+.-- |.-.+..+|..|-+...+++.
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 48899999975 444899999999998888776
No 147
>PTZ00421 coronin; Provisional
Probab=53.90 E-value=3e+02 Score=29.32 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=42.0
Q ss_pred ccCEEEEecCCC-EEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeecCCCCCC
Q 014962 17 TPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAI 94 (415)
Q Consensus 17 tp~~I~y~~~~~-~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~~~~~~~ 94 (415)
....|++||... .++.+..+ ..|++.|..+++.+..+.-. ...+.++ .+. +..+|+.|..
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h-~~~V~sl---a~spdG~lLatgs~------- 188 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGAD-------MVVNVWDVERGKAVEVIKCH-SDQITSL---EWNLDGSLLCTTSK------- 188 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCC-------CEEEEEECCCCeEEEEEcCC-CCceEEE---EEECCCCEEEEecC-------
Confidence 345678888754 44443322 45999999888876655422 2234444 333 4466776643
Q ss_pred CCCCCccccccEEEEEEEE
Q 014962 95 MPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 95 ~~~~e~~~~~Gri~vf~i~ 113 (415)
-|.|.+|++.
T Consensus 189 ---------Dg~IrIwD~r 198 (493)
T PTZ00421 189 ---------DKKLNIIDPR 198 (493)
T ss_pred ---------CCEEEEEECC
Confidence 4678888877
No 148
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=53.71 E-value=3.2e+02 Score=29.56 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred cCCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCC
Q 014962 185 WPGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (415)
Q Consensus 185 ~~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~ 262 (415)
..+.|++|+....+ +++ --+.|.||++.. .+.|....-+. ..|.++...+++++.|-.-.+|.++.+. ...
T Consensus 290 h~stv~~~~~~~~~--~~sgs~D~tVkVW~v~n--~~~l~l~~~h~--~~V~~v~~~~~~lvsgs~d~~v~VW~~~-~~~ 362 (537)
T KOG0274|consen 290 HTSSVRCLTIDPFL--LVSGSRDNTVKVWDVTN--GACLNLLRGHT--GPVNCVQLDEPLLVSGSYDGTVKVWDPR-TGK 362 (537)
T ss_pred CCceEEEEEccCce--EeeccCCceEEEEeccC--cceEEEecccc--ccEEEEEecCCEEEEEecCceEEEEEhh-hce
Confidence 35667777766444 444 556699999986 34444433233 3566666669999999988877666655 223
Q ss_pred eEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962 263 KLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 263 ~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~ 303 (415)
-|..+.. +..+|++. +++. ..++.+-.++-|.+..+..
T Consensus 363 cl~sl~g--H~~~V~sl-~~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 363 CLKSLSG--HTGRVYSL-IVDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred eeeeecC--CcceEEEE-EecCcceEEeeeeccceEeecCCc
Confidence 3444444 77888888 4455 6777776667777776543
No 149
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=53.54 E-value=2.5e+02 Score=28.26 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=87.7
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEE
Q 014962 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILF 254 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~l 254 (415)
.+.++..-..++-+..+.-- +.|..+|=++. |++++...+.+- +...++++.-+...+.+.||+.+|.|+-.++-.
T Consensus 76 ~~~l~~~i~~~~l~~Dv~vs-e~yvyvad~ssGL~IvDIS~P~sP--~~~~~lnt~gyaygv~vsGn~aYVadlddgfLi 152 (370)
T COG5276 76 HDVLLSVINARDLFADVRVS-EEYVYVADWSSGLRIVDISTPDSP--TLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLI 152 (370)
T ss_pred CcceEEEEehhhhhheeEec-ccEEEEEcCCCceEEEeccCCCCc--ceeccccCCceEEEEEecCCEEEEeeccCcEEE
Confidence 44556566667777666544 44477776655 899999874332 333677776688888888999999999999855
Q ss_pred EEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
+.. .++.+=.+.+|=..+.|-+--..+..++..+++.++-|.++...
T Consensus 153 vdv-sdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVS 199 (370)
T COG5276 153 VDV-SDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVS 199 (370)
T ss_pred EEC-CCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEcc
Confidence 443 23445566777777777766667788889999999999999853
No 150
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.58 E-value=3.6e+02 Score=29.80 Aligned_cols=190 Identities=11% Similarity=0.103 Sum_probs=117.8
Q ss_pred cCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEE-CCeeEEEEeeecCCCCCCCC
Q 014962 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIMP 96 (415)
Q Consensus 18 p~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l-~~~~~lvVGT~~~~~~~~~~ 96 (415)
.+.|-.||...-.+.. .+.+.|++-|-.|...+.+|+.. |.+ +..++| ..+..+++|.-
T Consensus 16 VKsVd~HPtePw~la~-------LynG~V~IWnyetqtmVksfeV~--~~P--vRa~kfiaRknWiv~GsD--------- 75 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAA-------LYNGDVQIWNYETQTMVKSFEVS--EVP--VRAAKFIARKNWIVTGSD--------- 75 (794)
T ss_pred eeeeecCCCCceEEEe-------eecCeeEEEecccceeeeeeeec--ccc--hhhheeeeccceEEEecC---------
Confidence 3456667764433222 23467999999999988887754 222 233333 45688888843
Q ss_pred CCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccce
Q 014962 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (415)
Q Consensus 97 ~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (415)
-++|-+|....
T Consensus 76 -------D~~IrVfnynt-------------------------------------------------------------- 86 (794)
T KOG0276|consen 76 -------DMQIRVFNYNT-------------------------------------------------------------- 86 (794)
T ss_pred -------CceEEEEeccc--------------------------------------------------------------
Confidence 46778887772
Q ss_pred EEEEEEEe-cCCceEEEeeeC-CceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEe---CCEEEEeecCC
Q 014962 177 LRLAYSTT-WPGMVLAICPYL-DRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRD 250 (415)
Q Consensus 177 L~l~~~~~-~~g~V~al~~~~-g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~---~n~IlVGD~~~ 250 (415)
++.++..+ -.+-+.+|+... .-|+|.+.-.. |.+|+|++ .......|-...-|+.+|... .|..+-+.+-+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 22233333 245566666442 23366655544 57999986 332232454555588888763 46788888999
Q ss_pred cEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCC---eEEEeCCCCcEEEEecC
Q 014962 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d---~~l~aD~~gNl~vl~~~ 302 (415)
.|-++.+-...-.|.+-+ +.+.|-++.++..+ .+|.+-.+.-+-+..+.
T Consensus 164 TVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred cEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 999998876655566554 45778888888544 56666556566666654
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.38 E-value=64 Score=35.97 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=47.4
Q ss_pred CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-e-eEEEEeeecCCCCC
Q 014962 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-E-QVLVVGTSLSSGPA 93 (415)
Q Consensus 16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~-~~lvVGT~~~~~~~ 93 (415)
++.+++.+|+....+++..++. ++|++.|-....-..+|.= ...|+..|.|.- . .+++ +++
T Consensus 134 Rs~~~ldfh~tep~iliSGSQD------g~vK~~DlR~~~S~~t~~~----nSESiRDV~fsp~~~~~F~--s~~----- 196 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQD------GTVKCWDLRSKKSKSTFRS----NSESIRDVKFSPGYGNKFA--SIH----- 196 (839)
T ss_pred cceeeeeeccCCccEEEecCCC------ceEEEEeeecccccccccc----cchhhhceeeccCCCceEE--Eec-----
Confidence 4788999999887777776544 5899999876655544332 334566676642 2 2222 221
Q ss_pred CCCCCCccccccEEEEEEEE
Q 014962 94 IMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 94 ~~~~~e~~~~~Gri~vf~i~ 113 (415)
-.|-+..|++.
T Consensus 197 ---------dsG~lqlWDlR 207 (839)
T KOG0269|consen 197 ---------DSGYLQLWDLR 207 (839)
T ss_pred ---------CCceEEEeecc
Confidence 27899999999
No 152
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.51 E-value=44 Score=38.62 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=49.1
Q ss_pred EecCCceEEEe-eeCCceEEEEeCC-eEEEEeeCCCCccceeeeeeeccce--EEEEEEEeCC-EEEEeecCCcEEEEEE
Q 014962 183 TTWPGMVLAIC-PYLDRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRTRF--MIMLLTAHFT-RIAVGDCRDGILFYSY 257 (415)
Q Consensus 183 ~~~~g~V~al~-~~~g~yLl~~vg~-~l~v~~~~~~~~~~L~~~a~~~~~~--~i~sI~~~~n-~IlVGD~~~Sv~ll~y 257 (415)
..+-|||++++ +-.|+.|++|-+. -|.+|+... .+.++..-+...|- .+....+.++ .++.+|-.-|++=+.|
T Consensus 127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVF 204 (1206)
T ss_pred CccCCcceeeEecCCCceeccccCCCcEEEEEccC--CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEe
Confidence 55789999999 4456734455443 378999886 34566644444332 3444444444 6889999998888877
Q ss_pred Ec
Q 014962 258 HE 259 (415)
Q Consensus 258 ~~ 259 (415)
+.
T Consensus 205 nk 206 (1206)
T KOG2079|consen 205 NK 206 (1206)
T ss_pred ch
Confidence 65
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=50.34 E-value=1e+02 Score=32.40 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=59.8
Q ss_pred EecCCceEEEe--eeCCceEEEEeCCe---EEEEeeC---CCCccceeeeeeeccceEEEEEEEe---CCEEEEeecCCc
Q 014962 183 TTWPGMVLAIC--PYLDRYFLASAGNA---FYVCGFP---NDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRDG 251 (415)
Q Consensus 183 ~~~~g~V~al~--~~~g~yLl~~vg~~---l~v~~~~---~~~~~~L~~~a~~~~~~~i~sI~~~---~n~IlVGD~~~S 251 (415)
.-+.+.|+++. +-..+ =++++|.| |-+|+++ .+. ..... |....-.|.+|... -+.|+. -.++|
T Consensus 183 kv~~~Rit~l~fHPt~~~-~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~--f~~hs~~Vs~l~F~P~n~s~i~s-sSyDG 257 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENR-KLVAVGDKGGQVGLWNFGTQEKDK-DGVYL--FTPHSGPVSGLKFSPANTSQIYS-SSYDG 257 (498)
T ss_pred EecccceEEEEecccCcc-eEEEEccCCCcEEEEecCCCCCcc-CceEE--eccCCccccceEecCCChhheee-eccCc
Confidence 34568888777 44554 24556655 8999995 221 11211 22222234455432 123332 22222
Q ss_pred E-EEEEEEccCCeEEEEec-CCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecC
Q 014962 252 I-LFYSYHEDARKLEQIYC-DPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 252 v-~ll~y~~~~~~L~~var-D~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~ 302 (415)
. -+..| +.+.+.++.+ |....|..+++|..++ .++.+|..||+.++...
T Consensus 258 tiR~~D~--~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 258 TIRLQDF--EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR 309 (498)
T ss_pred eeeeeee--cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence 2 11111 2333433333 3567788999998765 88999999976666543
No 154
>PHA03098 kelch-like protein; Provisional
Probab=49.55 E-value=3.3e+02 Score=28.79 Aligned_cols=79 Identities=10% Similarity=-0.135 Sum_probs=46.2
Q ss_pred eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC----cEEEEEEEccCCeEEEEecCCCcceeEEEEe
Q 014962 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD----GILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (415)
Q Consensus 207 ~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~----Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (415)
.+..|++.. ..+...+....+-.-.+..+.++.|+| |-... .=.+.+|++..++-..++.=+.++...++..
T Consensus 359 ~v~~yd~~~---~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 359 TVESWKPGE---SKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY 435 (534)
T ss_pred eEEEEcCCC---CceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE
Confidence 466777664 335544433333333444556777666 43211 1246889999888888887677777666666
Q ss_pred eeCCeEE
Q 014962 282 MDVDTAV 288 (415)
Q Consensus 282 Ld~d~~l 288 (415)
+++.-++
T Consensus 436 ~~~~iyv 442 (534)
T PHA03098 436 HDGKIYV 442 (534)
T ss_pred ECCEEEE
Confidence 5555333
No 155
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=49.21 E-value=2.6e+02 Score=30.26 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=61.1
Q ss_pred CceEEEe-eeCCceEEEEeCCeEEEEeeCC--CCccceeeeeeeccceEEEEEE----EeCC-EEEEeecCCcEEEEEEE
Q 014962 187 GMVLAIC-PYLDRYFLASAGNAFYVCGFPN--DNPQRVRRFAVGRTRFMIMLLT----AHFT-RIAVGDCRDGILFYSYH 258 (415)
Q Consensus 187 g~V~al~-~~~g~yLl~~vg~~l~v~~~~~--~~~~~L~~~a~~~~~~~i~sI~----~~~n-~IlVGD~~~Sv~ll~y~ 258 (415)
|.++... ..+|.+|...+|.++|+|.+.. +-.+-|.+..+..+........ ..+. -++||=-..=+.++.=.
T Consensus 124 g~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred cceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4444444 3456669999999999999983 1122244434333333222221 1111 12232111111111000
Q ss_pred -ccCCeEEEEecCCCcceeEEEEee--eCCeEEEeCCCCcEEEEec
Q 014962 259 -EDARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 259 -~~~~~L~~varD~~~~~vta~~~L--d~d~~l~aD~~gNl~vl~~ 301 (415)
.+-.+|.--.+-..+..||+++-+ ++..|+++-..||++.+..
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 111233334455556789999865 4558999999999999864
No 156
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=48.67 E-value=3.1e+02 Score=27.86 Aligned_cols=110 Identities=10% Similarity=0.129 Sum_probs=66.4
Q ss_pred ceEEEeeeC-CceEEE-EeCCeEEEEeeCCCCccceeeeeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccC--
Q 014962 188 MVLAICPYL-DRYFLA-SAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDA-- 261 (415)
Q Consensus 188 ~V~al~~~~-g~yLl~-~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~-- 261 (415)
.|+|+.=-+ +..+|- +-.+.+++.+++. .+.|+. |-....|+.... ..|++|+-+..--+|-++.-+..+
T Consensus 308 Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKE--frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 308 GVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKE--FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL 383 (508)
T ss_pred CeeEEEEccCcchhhcccccceEEEecccc--chhHHH--hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh
Confidence 566665333 332443 4455678889886 244433 333344555543 467888887777777776544322
Q ss_pred CeEEEEecCCCcceeEEEEeee--CCeEEEeCCCCcEEEEecCCC
Q 014962 262 RKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 262 ~~L~~varD~~~~~vta~~~Ld--~d~~l~aD~~gNl~vl~~~~~ 304 (415)
..|...+.|+ .|.++-.+. ...++++.+...++++.....
T Consensus 384 ~Tfk~~~~d~---~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 384 STFKPLGTDY---PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred hhccCCCCcc---cceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 3445555443 344555553 458999999999999986653
No 157
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.41 E-value=26 Score=22.10 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCeEEEEEEEEECCeeEEEEeeecCC
Q 014962 65 GETGKSMELVRVGHEQVLVVGTSLSS 90 (415)
Q Consensus 65 ~E~~~si~~~~l~~~~~lvVGT~~~~ 90 (415)
+|.+.||+. ++.+++|+|+..+
T Consensus 1 gE~i~aia~----g~~~vavaTS~~~ 22 (27)
T PF12341_consen 1 GEEIEAIAA----GDSWVAVATSAGY 22 (27)
T ss_pred CceEEEEEc----cCCEEEEEeCCCe
Confidence 577887776 6689999999653
No 158
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=48.40 E-value=2.9e+02 Score=27.53 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=98.3
Q ss_pred CcCCceeEEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeC-CCCcEEEEEeCCCCCeEEEEEEEEECCee
Q 014962 2 VHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP-LSGSVLSSFKLELGETGKSMELVRVGHEQ 80 (415)
Q Consensus 2 ~~~~~~~i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~-~t~~~i~s~~l~~~E~~~si~~~~l~~~~ 80 (415)
...+.|...++|...+...|.+..+..-++|... ..-++=-|- .||+.+. ..++ ++.-.-+..+.|.++.
T Consensus 3 ~~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~-~~~~-~~~~~~l~~I~f~~~~ 73 (302)
T PF14870_consen 3 ASGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVS-LDLD-NPFDYHLNSISFDGNE 73 (302)
T ss_dssp -SS--EEEEE-S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE------S------EEEEEEEETTE
T ss_pred ccCCCcEEeecCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccc-cCCC-ccceeeEEEEEecCCc
Confidence 3557799999999999999999987888887631 111222221 3344332 1222 1212334455566666
Q ss_pred EEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCC
Q 014962 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD 160 (415)
Q Consensus 81 ~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (415)
-+|||.. | ++|.-. |
T Consensus 74 g~ivG~~-----------------g--~ll~T~----------------------------------------------D 88 (302)
T PF14870_consen 74 GWIVGEP-----------------G--LLLHTT----------------------------------------------D 88 (302)
T ss_dssp EEEEEET-----------------T--EEEEES----------------------------------------------S
T ss_pred eEEEcCC-----------------c--eEEEec----------------------------------------------C
Confidence 7778842 1 122222 1
Q ss_pred CCCCCCccccccccceEEEEE-EEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-
Q 014962 161 DASCDGIKLEETETWQLRLAY-STTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA- 238 (415)
Q Consensus 161 ~~~~~g~~~~~~~~~~L~l~~-~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~- 238 (415)
+|. ..+.+. ...++|..+.|..+.....+++ +..=.+|.=.+.+ +.++... ....-.+..+..
T Consensus 89 ----gG~--------tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T~DgG-~tW~~~~-~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 89 ----GGK--------TWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRTTDGG-KTWQAVV-SETSGSINDITRS 153 (302)
T ss_dssp ----TTS--------S-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEESSTT-SSEEEEE--S----EEEEEE-
T ss_pred ----CCC--------CcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEeCCCC-CCeeEcc-cCCcceeEeEEEC
Confidence 121 233332 3456777777777766533332 2222344443322 3344422 122223444443
Q ss_pred -eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962 239 -HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 239 -~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~ 300 (415)
.|.+|+|+ .++-.|..+++.+......-|. ..+.+.++.|-.+..+....+.|.|+.-.
T Consensus 154 ~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 154 SDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred CCCcEEEEE--CcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 45567776 7888888888877778888887 56888899997666665566888888766
No 159
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=47.93 E-value=2e+02 Score=31.27 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred cCCceEEEe--eeCCceEEEEeC-CeEEEEeeCCCCccceeeeeeeccceEEEEEEE---eCCEEEEeecCCcEEEEEEE
Q 014962 185 WPGMVLAIC--PYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRDGILFYSYH 258 (415)
Q Consensus 185 ~~g~V~al~--~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~---~~n~IlVGD~~~Sv~ll~y~ 258 (415)
-.|+|++|. +|.-+ ++.++| -.+.+|.-+....-++ .+...+-+++.+.= .--..+++|.+-=+.++.+.
T Consensus 397 h~g~v~~v~~nPF~~k-~fls~gDW~vriWs~~~~~~Pl~---~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPK-NFLSVGDWTVRIWSEDVIASPLL---SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cCcceEeeecCCCccc-eeeeeccceeEeccccCCCCcch---hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 468999988 77677 555555 3467776652111111 11111123444432 23456667777666555443
Q ss_pred ccCCeEEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEEecCC
Q 014962 259 EDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl~~~~ 303 (415)
.+....+++......+....+-.. ..+.++|..|+++++++++
T Consensus 473 --~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 473 --QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 444555555544444555555443 4689999999999999875
No 160
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=47.78 E-value=64 Score=32.41 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=83.9
Q ss_pred ecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCccceeeeeeecc-ceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 184 TWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 184 ~~~g~V~al~~~~-g~yLl~~v--g~~l~v~~~~~~~~~~L~~~a~~~~-~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
+--..|..+.=.. .. +|++- .+.|.+|++.+...++--| -|-++ +....+....|+|++||.-..-+-++..+.
T Consensus 170 DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 3345566655222 33 55442 3448899998643221111 01111 334555566899999999999998887665
Q ss_pred cCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEe
Q 014962 260 DARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK 332 (415)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~ 332 (415)
.+--+...-.|...-.++++..-.. ..++.+-++|.|-++.=-. ..-....+.-|=|..|.+...
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--------~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--------NRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc--------HHHHHHHHhhcCCceeeeEEE
Confidence 4444444445555556666665433 4789999999998776111 135667777888887777654
No 161
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.74 E-value=2.9e+02 Score=27.35 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=40.1
Q ss_pred eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEec
Q 014962 239 HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~ 301 (415)
+||+|++|.-.-.++|+.++....--...+-|.. -+.+..-.|...+-++..+||+++++.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV--KVRAQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--ccceEEcCCCceEEEecCCCcEEEecc
Confidence 8999999999999999999865322222222222 222222234557777888899988873
No 162
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=47.57 E-value=3.1e+02 Score=27.58 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred EecCCceEEEeee-CCceE-EEEeCCeEEEEeeCCCCccceeee---eeeccceEEEEEEEeCC--EEEE-eecCCcEEE
Q 014962 183 TTWPGMVLAICPY-LDRYF-LASAGNAFYVCGFPNDNPQRVRRF---AVGRTRFMIMLLTAHFT--RIAV-GDCRDGILF 254 (415)
Q Consensus 183 ~~~~g~V~al~~~-~g~yL-l~~vg~~l~v~~~~~~~~~~L~~~---a~~~~~~~i~sI~~~~n--~IlV-GD~~~Sv~l 254 (415)
....|.|..+|-- .|+|| .++.-+++.+|...+.. ..|+.. +-...-.+.+-+.+-.. ++++ .| .|+.+
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~-ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~--~~lal 319 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR-NTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND--GSLAL 319 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccCc-ccccccccccccccccceEEEeecccceEEEEecC--CeEEE
Confidence 4456777777733 35544 46778889999887532 123321 11111111222332111 2222 12 44444
Q ss_pred EEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962 255 YSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~ 300 (415)
+. --.+.++-.=+- .-+-+.++.+- +......+|.+|||+...
T Consensus 320 l~--~~sgs~ir~l~~-h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 320 LN--LLEGSFVRRLST-HLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EE--ccCceEEEeeec-ccceeeEEeecCchhhhhccccCCcccccc
Confidence 43 223333333222 23344444443 446888899999988665
No 163
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=47.48 E-value=3.2e+02 Score=27.75 Aligned_cols=23 Identities=13% Similarity=0.421 Sum_probs=19.5
Q ss_pred EeCCCccCEEEEecCCCEEEEEEE
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRT 35 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~ 35 (415)
++++ +|.++++.|+-+.++|.+-
T Consensus 130 ve~d-hpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 130 VEYD-HPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred ccCC-CceEEEECCCcceEEEEEc
Confidence 4444 9999999999999999874
No 164
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=47.32 E-value=2.9e+02 Score=27.25 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=36.0
Q ss_pred EEEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCC
Q 014962 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (415)
Q Consensus 9 i~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~ 63 (415)
+..|...+---.|.|+|..+.++++-.+.. |-++|..+...+.+++|.
T Consensus 100 ~~~i~~~~eni~i~wsp~g~~~~~~~kdD~-------it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 100 TARIETKGENINITWSPDGEYIAVGNKDDR-------ITFIDARTYKIVNEEQFK 147 (313)
T ss_pred EEEeeccCcceEEEEcCCCCEEEEecCccc-------EEEEEecccceeehhccc
Confidence 445566666667889999888888865443 889999999988776654
No 165
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.15 E-value=3e+02 Score=28.74 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=72.5
Q ss_pred EEEEecCCceEEEe-eeCCceEEEEeC-CeEEEEeeCCCCccceeeeee---eccc--eEEEEEEEeCCEEEEeecCCcE
Q 014962 180 AYSTTWPGMVLAIC-PYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAV---GRTR--FMIMLLTAHFTRIAVGDCRDGI 252 (415)
Q Consensus 180 ~~~~~~~g~V~al~-~~~g~yLl~~vg-~~l~v~~~~~~~~~~L~~~a~---~~~~--~~i~sI~~~~n~IlVGD~~~Sv 252 (415)
+.+.+.-|.|+++. .++|..|+.+.= +.+-++++.. ..++.... +++. ..-+.+.+.+.|++.|-+-.||
T Consensus 335 ~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt---~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 335 TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT---KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred eeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccc---ccEEEEeeccccccccccceeEECCCCceeeeccCCCcE
Confidence 44677889999998 455554665533 3366777764 22333111 1111 1345556678899999999999
Q ss_pred EEEEEEccCCeEEEEecCCCcc-eeEEEEeee-CCeEEEeCCCCcE
Q 014962 253 LFYSYHEDARKLEQIYCDPSQR-LVADCVLMD-VDTAVVSDRKGSI 296 (415)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~-~vta~~~Ld-~d~~l~aD~~gNl 296 (415)
+++. -..++++-+.+-.... .++++.+=. .+.++.+|+.+-.
T Consensus 412 ~iW~--v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 412 YIWS--VFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEEE--ccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 6655 4578888777776666 788888743 3478888886643
No 166
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.85 E-value=1.6e+02 Score=34.87 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=60.5
Q ss_pred CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-----------eCCEEEEeecCCcEEE-EEEEccCCe
Q 014962 196 LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-----------HFTRIAVGDCRDGILF-YSYHEDARK 263 (415)
Q Consensus 196 ~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-----------~~n~IlVGD~~~Sv~l-l~y~~~~~~ 263 (415)
-|+ .-+.++++|++|++.+++. +.-...... .|..+.. +...++|++.++=+.+ +.+++..+.
T Consensus 90 I~R-aWiTiDn~L~lWny~~~~e--~~~~d~~sh--tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~ 164 (1311)
T KOG1900|consen 90 IGR-AWITIDNNLFLWNYESDNE--LAEYDGLSH--TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE 164 (1311)
T ss_pred hcc-eEEEeCCeEEEEEcCCCCc--cccccchhh--hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc
Confidence 377 8899999999999998542 211111111 2222221 2356666776653322 233444555
Q ss_pred EEEEecC----CCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962 264 LEQIYCD----PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 264 L~~varD----~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
+..+..- .....|.++..-+++.+..+=++||||=+.|..
T Consensus 165 ~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~ 208 (1311)
T KOG1900|consen 165 LSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQA 208 (1311)
T ss_pred ccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEec
Confidence 5444444 345566667666777777777778999888765
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.85 E-value=3.8e+02 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=19.4
Q ss_pred CCceEEEeeeCC-ceEEEE--eCCeEEEEeeCCC
Q 014962 186 PGMVLAICPYLD-RYFLAS--AGNAFYVCGFPND 216 (415)
Q Consensus 186 ~g~V~al~~~~g-~yLl~~--vg~~l~v~~~~~~ 216 (415)
..+|.+|..-.. +.+||+ .-++|.+|++...
T Consensus 243 Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g 276 (463)
T KOG0270|consen 243 TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG 276 (463)
T ss_pred hHHHHHHHhccccceeEEecCCCceEEEEEcCCC
Confidence 356777764432 336664 4466999999864
No 168
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=45.69 E-value=16 Score=28.98 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.7
Q ss_pred EecChHHHHHHHHHHHHHhc
Q 014962 372 IPISSEEYELLEAVQARLAI 391 (415)
Q Consensus 372 ~pl~~~~~~~L~~LQ~~l~~ 391 (415)
+||+++|-+.|..||++|..
T Consensus 1 M~LSe~E~r~L~eiEr~L~~ 20 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRA 20 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999988
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.30 E-value=3.1e+02 Score=26.90 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=73.5
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCc-----cceeeeeeecc------ceEEEEEEEeCCEEE
Q 014962 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNP-----QRVRRFAVGRT------RFMIMLLTAHFTRIA 244 (415)
Q Consensus 176 ~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~-----~~L~~~a~~~~------~~~i~sI~~~~n~Il 244 (415)
|++.+.+.--+||||.|.-.... ||.+--..|+-|.|.+... .+++..--+.. .+.+..++...|-|+
T Consensus 52 k~~iv~eqahdgpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred CcceeeccccCCCeeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 77888888889999999988666 6666667788888875211 11211111111 124566665555444
Q ss_pred EeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 245 VGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~ 301 (415)
.+- =+++ ++.++-+.+++...-|-. .-.+-++.--. ...++.+-.+|...+...
T Consensus 131 ~Ag-GD~~-~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 131 FAG-GDGV-IYQVDLEDGRIQREYRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred Eec-CCeE-EEEEEecCCEEEEEEcCC-cceeeeeeecccCcceeecCCCccEEEEec
Confidence 322 3333 678888888887776652 23343333322 246777777888777763
No 170
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=44.94 E-value=3.1e+02 Score=26.87 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=75.7
Q ss_pred ceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEEecccCCCC
Q 014962 42 CSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCG 121 (415)
Q Consensus 42 ~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 121 (415)
..|.|+-+|+.|++++.+..|++.-=...|+.+ ++..+.+ | ...|..++|+..
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qL-T---------------Wk~~~~f~yd~~-------- 118 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQL-T---------------WKEGTGFVYDPN-------- 118 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEE-E---------------SSSSEEEEEETT--------
T ss_pred CcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEE-E---------------ecCCeEEEEccc--------
Confidence 369999999999999999999987766666655 3332222 1 335566555554
Q ss_pred CccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccccccccceEEEEEEEecCCceEEEeeeCCceEE
Q 014962 122 SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFL 201 (415)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl 201 (415)
.|+.+.+...+|-=-.||.-+.. |+
T Consensus 119 ------------------------------------------------------tl~~~~~~~y~~EGWGLt~dg~~-Li 143 (264)
T PF05096_consen 119 ------------------------------------------------------TLKKIGTFPYPGEGWGLTSDGKR-LI 143 (264)
T ss_dssp ------------------------------------------------------TTEEEEEEE-SSS--EEEECSSC-EE
T ss_pred ------------------------------------------------------cceEEEEEecCCcceEEEcCCCE-EE
Confidence 13333333334333445544445 99
Q ss_pred EEeCCe-EEEEeeCCCCccceeeeeeeccce---EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEE
Q 014962 202 ASAGNA-FYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (415)
Q Consensus 202 ~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~---~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~ 266 (415)
++=|+. |+.++... -+..+.+...+... .+.-|...++.|+. -+..+=.+++.+++.++...
T Consensus 144 ~SDGS~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i~G~IyA-NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 144 MSDGSSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYINGKIYA-NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EE-SSSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEE-EETTSSEEEEEETTT-BEEE
T ss_pred EECCccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEEcCEEEE-EeCCCCeEEEEeCCCCeEEE
Confidence 998854 77777653 23344434333333 45556667776554 44445556777777665443
No 171
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=44.72 E-value=3.4e+02 Score=27.28 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=76.4
Q ss_pred EecCCceEEEeeeCCceE--EEEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962 183 TTWPGMVLAICPYLDRYF--LASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY 257 (415)
Q Consensus 183 ~~~~g~V~al~~~~g~yL--l~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y 257 (415)
-.-++||.++.-+.|. + +++.|+ .|.-|+.+.. . ..+....|=.+..+++.....+|+.+-+++.++..
T Consensus 110 ~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~R~~--~---pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDTRSS--N---PVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eecccceeEEEEecCC-CcceeEecccccceeecccCCC--C---eeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 3457888888888775 4 444443 3677777652 1 22445556678888999999999999999988887
Q ss_pred EccCCeEEEEecCCCcceeEEEE-eeeCCeEEEeCCCCcEEEEecCC
Q 014962 258 HEDARKLEQIYCDPSQRLVADCV-LMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 258 ~~~~~~L~~varD~~~~~vta~~-~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
+..+..+-.+ ..+..-.+.++. |-|.+.++.+-..|-..+...++
T Consensus 184 ~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 184 ENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred CCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 6544433322 233444556666 44667888888888877777655
No 172
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=43.68 E-value=3.1e+02 Score=26.48 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=80.3
Q ss_pred cceEEEEEEEecCCceEEEeee-CCceEEEEeCCe-EEEEeeCCCC----cc---------ceeeeeeeccceEEEEEEE
Q 014962 174 TWQLRLAYSTTWPGMVLAICPY-LDRYFLASAGNA-FYVCGFPNDN----PQ---------RVRRFAVGRTRFMIMLLTA 238 (415)
Q Consensus 174 ~~~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~-l~v~~~~~~~----~~---------~L~~~a~~~~~~~i~sI~~ 238 (415)
+..++-+..-+-..+|.++.-. +|+.-.++.|+| ++++.+..-. .+ +.+.-.-++..+|.+.-..
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3467767666667888888733 455234566665 5566554200 00 0111123345568888888
Q ss_pred eCCEEEEeecCCcEEEEEEEccCCeEE--EEecCCCcceeEEEEeeeCC----eEEEe--CCCCcEEEEecCC
Q 014962 239 HFTRIAVGDCRDGILFYSYHEDARKLE--QIYCDPSQRLVADCVLMDVD----TAVVS--DRKGSIAVLSCSD 303 (415)
Q Consensus 239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~--~varD~~~~~vta~~~Ld~d----~~l~a--D~~gNl~vl~~~~ 303 (415)
+|.+|..|.--+-+.++.|+.+...+. .+--.....-+..+.|||+. .++.+ -.++||++-.+-.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999999999999999998876442 12222234456788899763 45544 3366788776543
No 173
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.56 E-value=5.8e+02 Score=29.62 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=114.8
Q ss_pred CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCC--CcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCC
Q 014962 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS--GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (415)
Q Consensus 16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t--~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~ 93 (415)
...+.|.+.+++..++|...+. |+|.--.+ |=.-+.+.|...+.+.. ..|.-.+..-+.|+|.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~--------vqLWt~~NYHWYLKqei~~~~~~~~~~-~~Wdpe~p~~L~v~t~------ 369 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR--------VQLWTRSNYHWYLKQEIRFSSSESVNF-VKWDPEKPLRLHVLTS------ 369 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC--------ceEEEeeCCEEEEEEEEEccCCCCCCc-eEECCCCCCEEEEEec------
Confidence 4668899999999999876222 56654444 44667777777766544 2332234445667765
Q ss_pred CCCCCCccccccEEEEEEEEecccCCCCCc----cccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCccc
Q 014962 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSM----TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (415)
Q Consensus 94 ~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (415)
.|++..+++....++..+.. ....-.+....+.+||+..+ .+.| |
T Consensus 370 ----------~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~------------VPPP---------M 418 (928)
T PF04762_consen 370 ----------NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV------------VPPP---------M 418 (928)
T ss_pred ----------CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC------------CCch---------H
Confidence 35555555553222111100 00111122344455554433 2222 1
Q ss_pred cccccceEEEEEEEecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCcc-----ce-eeeee--------eccceEE
Q 014962 170 EETETWQLRLAYSTTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQ-----RV-RRFAV--------GRTRFMI 233 (415)
Q Consensus 170 ~~~~~~~L~l~~~~~~~g~V~al~~~~g--~yLl~~vg~~l~v~~~~~~~~~-----~L-~~~a~--------~~~~~~i 233 (415)
+ .++-+++.+|.+++--.. ++.++...+.|.+|.|...+.. .+ ..+.. ......+
T Consensus 419 -s--------~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (928)
T PF04762_consen 419 -S--------SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSL 489 (928)
T ss_pred -h--------ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccE
Confidence 0 233455688888884433 3355567777999997642211 01 11110 0011123
Q ss_pred EEEEEeC-C-EEEEeec---CCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCe-EEEeCCCCcEEEEecCC
Q 014962 234 MLLTAHF-T-RIAVGDC---RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDT-AVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 234 ~sI~~~~-n-~IlVGD~---~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~-~l~aD~~gNl~vl~~~~ 303 (415)
..+.-.. + .+++.+. ...+.++.+.........-........+....-.+... ++.-+.+|.++.+...+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 490 RQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred EEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 3333322 2 3333333 34555555533333333333443444444444444443 77778899998776544
No 174
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=42.49 E-value=3.8e+02 Score=27.16 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred CccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECC-eeEEEEeeecCCCCCC
Q 014962 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGPAI 94 (415)
Q Consensus 16 ~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~-~~~lvVGT~~~~~~~~ 94 (415)
+..|.|.+||.+..++|++-.+ .++|+|-.|++..-+-. +...+--+++.|.... ..+.|-|
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp-------~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTa--------- 279 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHP-------TLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTA--------- 279 (430)
T ss_pred ceeeeEeecCCCceEEEecCCC-------ceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEe---------
Confidence 3568899999988777765333 59999999988664433 3333444555555542 2444433
Q ss_pred CCCCCccccccEEEEEEEE
Q 014962 95 MPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 95 ~~~~e~~~~~Gri~vf~i~ 113 (415)
..-|-|-+|+=.
T Consensus 280 -------SkDG~IklwDGV 291 (430)
T KOG0640|consen 280 -------SKDGAIKLWDGV 291 (430)
T ss_pred -------ccCCcEEeeccc
Confidence 235777777765
No 175
>PLN02772 guanylate kinase
Probab=40.41 E-value=1.9e+02 Score=30.01 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.8
Q ss_pred EEEecCCCcceeEEEEeeeCCeEEEeCC----CCcEEEEecCC
Q 014962 265 EQIYCDPSQRLVADCVLMDVDTAVVSDR----KGSIAVLSCSD 303 (415)
Q Consensus 265 ~~varD~~~~~vta~~~Ld~d~~l~aD~----~gNl~vl~~~~ 303 (415)
...+.=+.+|..-++..++++++|+-.+ +-.||+|+.+.
T Consensus 67 ~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 67 IVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred cccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcCC
Confidence 4456677788888888888888877764 45688888754
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=40.23 E-value=2.1e+02 Score=29.09 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=60.7
Q ss_pred CceEEEeeeCC--ceEEEE-eCCeEEEEeeCCCCccceeeee-eeccceEEEEEE--EeCCEEEEeecCCcEEEEEEE--
Q 014962 187 GMVLAICPYLD--RYFLAS-AGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYH-- 258 (415)
Q Consensus 187 g~V~al~~~~g--~yLl~~-vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~-- 258 (415)
++|..|..... .+||.| --..|.+|+++.+ .-+-..+ .....-.|.+++ ..+++|+-+-+-.|+.+++.+
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 34444443333 334433 3445899999863 1111111 111122466665 578899999999999999887
Q ss_pred ccCCeEEEE-----------------------ecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecC
Q 014962 259 EDARKLEQI-----------------------YCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 259 ~~~~~L~~v-----------------------arD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
+-.++|+.. .+|.+...|-++.++. .++.+-.-+|-.++=+|
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKP 278 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEec
Confidence 333444333 3444444444443332 56666676675555555
No 177
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=38.45 E-value=1.9e+02 Score=29.31 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=66.4
Q ss_pred ecCCceEEEeeeCCceEEE--EeCCeEEEEeeCCCCccceeeee-eeccceEEEEEEEeCCEEEEeecCCcEEEEEEEcc
Q 014962 184 TWPGMVLAICPYLDRYFLA--SAGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 184 ~~~g~V~al~~~~g~yLl~--~vg~~l~v~~~~~~~~~~L~~~a-~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
..+.+|.||+=-++..+|+ +...++.||.+... +-||+.. .+.......+....+..|+-+..-+-+-+-..+.
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS- 337 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS- 337 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-
Confidence 3589999999666643444 35567999999863 3355532 1112223334444455677666555554443322
Q ss_pred CCeEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEe
Q 014962 261 ARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS 300 (415)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~ 300 (415)
.+.|-++ |- ....|..+.|-+++ .+|.+..+|.+-+..
T Consensus 338 GK~LKEf-rG-HsSyvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 338 GKCLKEF-RG-HSSYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred chhHHHh-cC-ccccccceEEcCCCCeEEEecCCccEEEec
Confidence 2223222 11 34567788887665 889999999998886
No 178
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=38.10 E-value=97 Score=33.18 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeee
Q 014962 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (415)
Q Consensus 15 ~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~ 87 (415)
.+--.-.+++|+.++++..++-++.-. ...|.++|+.|++.+..+.+. .+.++.+..-..-.=|.+|++
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~-~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMT-AGTLFFFDRMTLDTVYKIDIS---TASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCC-CceEEEEeccceeeEEEecCC---CceEEEEeecchhhheeeecC
Confidence 345566789999999988888776433 347999999999999999988 333333333332223444554
No 179
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=37.54 E-value=14 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.2
Q ss_pred cChHHHHHHHHHHHHHhcCCCC
Q 014962 374 ISSEEYELLEAVQARLAIHPLT 395 (415)
Q Consensus 374 l~~~~~~~L~~LQ~~l~~~~~~ 395 (415)
|++++|+.|.++|..|.+|+.+
T Consensus 4 L~~~d~rvL~aiE~gmk~hE~V 25 (82)
T PF09202_consen 4 LSKEDFRVLRAIEMGMKNHEWV 25 (82)
T ss_dssp --HHHHHHHHHHHTTTTT-SSE
T ss_pred CCHHHHHHHHHHHHcccCCccC
Confidence 5789999999999999997554
No 180
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=37.37 E-value=4.1e+02 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=23.1
Q ss_pred EEEEEEccCCeEEEEecCC-CcceeEEEEeeeCC
Q 014962 253 LFYSYHEDARKLEQIYCDP-SQRLVADCVLMDVD 285 (415)
Q Consensus 253 ~ll~y~~~~~~L~~varD~-~~~~vta~~~Ld~d 285 (415)
.++.|++..++-..++.-+ .+|...++..+++.
T Consensus 272 ~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~ 305 (323)
T TIGR03548 272 KILIYNVRTGKWKSIGNSPFFARCGAALLLTGNN 305 (323)
T ss_pred eEEEEECCCCeeeEcccccccccCchheEEECCE
Confidence 4789999999888887543 35556666666655
No 181
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=36.35 E-value=4.4e+02 Score=26.15 Aligned_cols=138 Identities=12% Similarity=-0.000 Sum_probs=81.0
Q ss_pred EEEEecCCceEEEe-eeCCceEEEE----eCCe--EEEEeeCCCCccceeeeeeeccceEEEEEE-----EeCCEEEEee
Q 014962 180 AYSTTWPGMVLAIC-PYLDRYFLAS----AGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT-----AHFTRIAVGD 247 (415)
Q Consensus 180 ~~~~~~~g~V~al~-~~~g~yLl~~----vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~-----~~~n~IlVGD 247 (415)
+..-+++.+|..+. .+.|-+++++ +|.. |.+|++..+.++..-...+++.++.-.++. ..+.+|+.|+
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 44556777777766 4556534443 3333 578898865433222223444444333333 4789999999
Q ss_pred cCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCcc
Q 014962 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEI 326 (415)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~ 326 (415)
---++ -+|+...+....-..+.....++.+.+--+ ..||.+-++-+-..+... -|+..-.|-.-..
T Consensus 167 e~G~i--s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~-----------tl~v~Kty~te~P 233 (327)
T KOG0643|consen 167 EDGSI--SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR-----------TLEVLKTYTTERP 233 (327)
T ss_pred CCCcE--EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc-----------ceeeEEEeeeccc
Confidence 98888 566777764444444445558888887544 467777766665555422 3555556655555
Q ss_pred ccEE
Q 014962 327 AVSI 330 (415)
Q Consensus 327 Vt~~ 330 (415)
||+-
T Consensus 234 vN~a 237 (327)
T KOG0643|consen 234 VNTA 237 (327)
T ss_pred ccce
Confidence 5553
No 182
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.15 E-value=2.1e+02 Score=27.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.2
Q ss_pred CCCCCeEEEEEEEEEC--C---eeEEEEeee
Q 014962 62 LELGETGKSMELVRVG--H---EQVLVVGTS 87 (415)
Q Consensus 62 l~~~E~~~si~~~~l~--~---~~~lvVGT~ 87 (415)
+..--.++||.+++-. + -..+||||-
T Consensus 173 l~~~t~ITcm~tikk~~~d~~a~scLViGTE 203 (257)
T PF14779_consen 173 LKRQTVITCMATIKKSSADEDAVSCLVIGTE 203 (257)
T ss_pred cccCceeEEeeeecccccCCCCcceEEEEec
Confidence 3334577888888764 2 279999997
No 183
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=34.41 E-value=5.4e+02 Score=26.61 Aligned_cols=100 Identities=13% Similarity=0.202 Sum_probs=55.0
Q ss_pred ceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEE----eC---CEEEEeec---CCcEEEEEEEccCCeEE
Q 014962 198 RYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA----HF---TRIAVGDC---RDGILFYSYHEDARKLE 265 (415)
Q Consensus 198 ~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~----~~---n~IlVGD~---~~Sv~ll~y~~~~~~L~ 265 (415)
+.|+++..++ |++|+++. +.|...... .+.-+.|.. .+ +.++++|- ..++.+++.+++.+.|.
T Consensus 68 kSlIigTdK~~GL~VYdL~G---k~lq~~~~G--r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDG---KELQSLPVG--RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS----EEEEE-SS---EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cceEEEEeCCCCEEEEcCCC---cEEEeecCC--CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 4477776665 89999985 455554322 222222221 12 24555664 36899999999888888
Q ss_pred EEecCCCc-----ceeEEEEee-eC---C-eEEEeCCCCcEEEEecC
Q 014962 266 QIYCDPSQ-----RLVADCVLM-DV---D-TAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 266 ~varD~~~-----~~vta~~~L-d~---d-~~l~aD~~gNl~vl~~~ 302 (415)
.+..-..+ ..+.-+.+- +. . ..++.+++|.+.-+++.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~ 189 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELT 189 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEE
Confidence 77542222 123333332 21 2 67788889988877764
No 184
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=34.24 E-value=5.3e+02 Score=28.71 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=64.6
Q ss_pred cCCceEEEeeeCCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEE-EeCCEEEEee-cCCcEEEEEEEcc
Q 014962 185 WPGMVLAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT-AHFTRIAVGD-CRDGILFYSYHED 260 (415)
Q Consensus 185 ~~g~V~al~~~~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~-~~~n~IlVGD-~~~Sv~ll~y~~~ 260 (415)
-.+.|.+++.+.+..+ ++++|. |..|++.. ..+++. +.+..++.+|+ ...+.++|.. --+.+-+++-+
T Consensus 178 HtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~g--e~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-- 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDG--EVLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-- 249 (745)
T ss_pred chhheeeeEEecCCCe-EeecCCceEEEEeccC--ceeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence 3578999999987324 444444 56777743 234443 33345777777 4555555544 44555554432
Q ss_pred CCeEEEEecCCCcc-eeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962 261 ARKLEQIYCDPSQR-LVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 261 ~~~L~~varD~~~~-~vta~~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
.+...-. .|. .+-++.+|..+.++++-.+|=+++|....
T Consensus 250 --e~~q~I~--lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 --ECVQVIT--LPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --ceEEEEe--cCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 1222212 233 55578889888899999999999998653
No 185
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=33.80 E-value=1.1e+02 Score=34.96 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=46.5
Q ss_pred eEEEeeeCCceEEEEeCCeEEEEeeCCCC-ccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEc
Q 014962 189 VLAICPYLDRYFLASAGNAFYVCGFPNDN-PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (415)
Q Consensus 189 V~al~~~~g~yLl~~vg~~l~v~~~~~~~-~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~ 259 (415)
++++|-...+ ++.++|-...+-++...+ ++.-...+.+..+.....-...|+.++-+|.+-+|.+++|+.
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4568877778 778887654333322211 122222345555556666677899999999999999999983
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=1.5e+02 Score=30.76 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=48.6
Q ss_pred EEEEEEE--eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeCCeEEEe---CCCCcEEEEec
Q 014962 232 MIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS---DRKGSIAVLSC 301 (415)
Q Consensus 232 ~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~d~~l~a---D~~gNl~vl~~ 301 (415)
.|+++.+ .|.++.+|.+--||.++ +...-+...+-+..+...||+++|+.+.+.++. |..-+++.+..
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~--~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIY--DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEE--EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4666665 68899999998898665 455667788888888889999999977654444 43334444443
No 187
>PLN02193 nitrile-specifier protein
Probab=32.97 E-value=6e+02 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=23.3
Q ss_pred EEEEEEccCCeEEEEec---CCCcceeEEEEeeeCC
Q 014962 253 LFYSYHEDARKLEQIYC---DPSQRLVADCVLMDVD 285 (415)
Q Consensus 253 ~ll~y~~~~~~L~~var---D~~~~~vta~~~Ld~d 285 (415)
.++.|+.+.++-..+.. .+.+|...++..+++.
T Consensus 344 dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKH 379 (470)
T ss_pred ceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCE
Confidence 36788988887777753 3677877777666554
No 188
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=32.47 E-value=7.3e+02 Score=27.50 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=64.1
Q ss_pred CCceEEEeeeCCceEEE-EeC-CeEEEEeeCCCCc----------cceeeeeeeccceEEEEEEEeCCEEEEeecCCcE-
Q 014962 186 PGMVLAICPYLDRYFLA-SAG-NAFYVCGFPNDNP----------QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI- 252 (415)
Q Consensus 186 ~g~V~al~~~~g~yLl~-~vg-~~l~v~~~~~~~~----------~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv- 252 (415)
.++|..+....|..+|+ +.| +++.+|+.+...- .-++..||..+.-.+-..--.++-|++-|++-.-
T Consensus 100 ~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 100 KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred cceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 58899999888855554 344 5588999986210 0123334443332233333345668888876554
Q ss_pred -EEEEE--------EccCCeEEEE---------ecCCCcceeEEEEeeeCCeEEEeCC-CCcEEEEec
Q 014962 253 -LFYSY--------HEDARKLEQI---------YCDPSQRLVADCVLMDVDTAVVSDR-KGSIAVLSC 301 (415)
Q Consensus 253 -~ll~y--------~~~~~~L~~v---------arD~~~~~vta~~~Ld~d~~l~aD~-~gNl~vl~~ 301 (415)
.+.+| +..+.-.... +.......||.+.|.|+++++.|-. ++-|-|+.+
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 22222 1100011111 1111223477888999999887766 888888764
No 189
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.28 E-value=2.9e+02 Score=28.10 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=62.4
Q ss_pred EEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeC---CEEEEeecCCcEEEEEEEccCCeEEEEecCCCcc
Q 014962 200 FLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF---TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR 274 (415)
Q Consensus 200 Ll~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~---n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~ 274 (415)
++|+.|.. ++|.++.. ..+.+ ......-.|..|+.+. ++|+.+---+||-+...+.+.=-++.-+-.-+.-
T Consensus 107 ~la~~G~~GvIrVid~~~---~~~~~-~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVS---GQCSK-NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred eEEeecceeEEEEEecch---hhhcc-ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 45555543 56777764 22222 1111122466666643 5788888889998887665432333333444555
Q ss_pred eeEEEEe-eeCCeEEEeCCCCcEEEEecC
Q 014962 275 LVADCVL-MDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 275 ~vta~~~-Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
.|.+++| +|.+.++.+-.+..|.+.+++
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 8999998 577788888889999998877
No 190
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=32.13 E-value=4.7e+02 Score=25.21 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=49.8
Q ss_pred ceeEEEEeCCC---ccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCeeEE
Q 014962 6 RLNVRKFHLGG---TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVL 82 (415)
Q Consensus 6 ~~~i~~i~L~~---tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~~~l 82 (415)
++.+...||.. -+--|+|+|+++.++.+.-++ ..|--++. +++++.++.|....=...|+.+ ++..|+
T Consensus 9 ~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~------~~i~els~-~G~vlr~i~l~g~~D~EgI~y~--g~~~~v 79 (248)
T PF06977_consen 9 RVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEP------GEIYELSL-DGKVLRRIPLDGFGDYEGITYL--GNGRYV 79 (248)
T ss_dssp EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTT------TEEEEEET-T--EEEEEE-SS-SSEEEEEE---STTEEE
T ss_pred EEEEeeeECCCccCCccccEEcCCCCeEEEEECCC------CEEEEEcC-CCCEEEEEeCCCCCCceeEEEE--CCCEEE
Confidence 34555566655 367899999988766665222 23545565 4789999999876666666553 555665
Q ss_pred EEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 83 vVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
++- ...++|++|++.
T Consensus 80 l~~----------------Er~~~L~~~~~~ 94 (248)
T PF06977_consen 80 LSE----------------ERDQRLYIFTID 94 (248)
T ss_dssp EEE----------------TTTTEEEEEEE-
T ss_pred EEE----------------cCCCcEEEEEEe
Confidence 532 236899999997
No 191
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=31.54 E-value=8.8e+02 Score=28.19 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCcceeEEEEeee-CCeEEEeCCCCcEEEEe
Q 014962 271 PSQRLVADCVLMD-VDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 271 ~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~ 300 (415)
+....+++..+-. .+.+..+|..|++.+++
T Consensus 310 p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 310 PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3444466666543 45788899999999998
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=31.51 E-value=1e+02 Score=34.04 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=45.6
Q ss_pred ceEEEeee-CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEE
Q 014962 188 MVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY 255 (415)
Q Consensus 188 ~V~al~~~-~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll 255 (415)
.|+.+|-- .|..|++|.|+++++|+.... .+|....-++-..+.+.-...|.+..-|-+-++|.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 56666622 355599999999999999863 3455544455455666666677788888888887654
No 193
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=31.21 E-value=4.2e+02 Score=27.39 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=49.4
Q ss_pred EeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCc-EEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCC
Q 014962 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSS 90 (415)
Q Consensus 12 i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~-~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~ 90 (415)
+--+..-..|.|+|..++++.++++.. |+|.||.+.. -+-++.|-.+-.-.+...+.-.+ +|..|.-++.
T Consensus 297 ~~~~ksl~~i~~~~~~~Ll~~gssdr~-------irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~-~~~~~S~S~D- 367 (423)
T KOG0313|consen 297 LTTNKSLNCISYSPLSKLLASGSSDRH-------IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN-EFQLVSGSYD- 367 (423)
T ss_pred eecCcceeEeecccccceeeecCCCCc-------eeecCCCCCCCceeEEeeecchhhhhheecCCCC-ceEEEEEecC-
Confidence 333445667899999888888887764 9999998865 33445555444333333333333 5555554432
Q ss_pred CCCCCCCCCccccccEEEEEEEEe
Q 014962 91 GPAIMPSGEAESTKGRLIVLCIEH 114 (415)
Q Consensus 91 ~~~~~~~~e~~~~~Gri~vf~i~~ 114 (415)
|.+.++++..
T Consensus 368 --------------~t~klWDvRS 377 (423)
T KOG0313|consen 368 --------------NTVKLWDVRS 377 (423)
T ss_pred --------------CeEEEEEecc
Confidence 4567888873
No 194
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=30.79 E-value=4.3e+02 Score=27.27 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=54.5
Q ss_pred eEEEEeeCCCCccceeeeeee-ccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccCCeEEEEecCCC----cceeEEE
Q 014962 207 AFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS----QRLVADC 279 (415)
Q Consensus 207 ~l~v~~~~~~~~~~L~~~a~~-~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~----~~~vta~ 279 (415)
.+|.|+... +-+.+..+ +.-..+.+++ .-|.-++-|-.-+|+-++.++... .||.- -..|.++
T Consensus 252 nlY~~DmR~----l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~------SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 252 NLYTYDMRN----LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH------SRDIYHTKRMQHVFCV 321 (433)
T ss_pred cceehhhhh----hcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc------chhhhhHhhhheeeEE
Confidence 378888764 11222222 2233455554 357778889999999888877533 23322 2257777
Q ss_pred Ee-eeCCeEEEeCCCCcEEEEecC
Q 014962 280 VL-MDVDTAVVSDRKGSIAVLSCS 302 (415)
Q Consensus 280 ~~-Ld~d~~l~aD~~gNl~vl~~~ 302 (415)
.+ +|...++.+-.++|+.+.+-+
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEeccccEEEecCCCcceeeeecc
Confidence 76 466678888899999988843
No 195
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.85 E-value=4.8e+02 Score=25.61 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=67.4
Q ss_pred EEeCCEEEEeecCCcEEEEEEEccC--CeEEEEecCCCcceeEEEEeeeCCeEEEe-CCCCcEEEEecCCCcCCCCCCCC
Q 014962 237 TAHFTRIAVGDCRDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMDVDTAVVS-DRKGSIAVLSCSDRLEDNASPEC 313 (415)
Q Consensus 237 ~~~~n~IlVGD~~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~Ld~d~~l~a-D~~gNl~vl~~~~~~~~~~~~~~ 313 (415)
+-.|.+|+-.-.-++|-++...... +.|.++-.+..|.|=.+-.---++++|++ --+|.+.+.+... .
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~---------g 90 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN---------G 90 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC---------C
Confidence 3456667776677777777766554 45677777777777544443335566555 4477788777322 1
Q ss_pred ccceeeeeecC-ccccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEEEecC
Q 014962 314 NLTPNCAYHMG-EIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPIS 375 (415)
Q Consensus 314 kL~~~~~fhlG-d~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl~ 375 (415)
+.....+|-.- ..||++.-. |. .....+..++++|.|++|.-=+
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wa------ph------------eygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWA------PH------------EYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred chhhhhhhhhhcccceeeccc------cc------------ccceEEEEeeCCCcEEEEEEcC
Confidence 33333444333 367766321 10 2345688889999999887543
No 196
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=29.65 E-value=4.8e+02 Score=25.97 Aligned_cols=116 Identities=14% Similarity=-0.003 Sum_probs=64.6
Q ss_pred EEecCCceEEEeeeCC-ceEEEEeCCeEEEEeeCCCCccceeeeeeec--cc-eEEEEEEEe-CCEEEEeecC-----Cc
Q 014962 182 STTWPGMVLAICPYLD-RYFLASAGNAFYVCGFPNDNPQRVRRFAVGR--TR-FMIMLLTAH-FTRIAVGDCR-----DG 251 (415)
Q Consensus 182 ~~~~~g~V~al~~~~g-~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~--~~-~~i~sI~~~-~n~IlVGD~~-----~S 251 (415)
....++.+.++..+.. . +|+++...+++++.+... ..+..+... .+ ......++. .+.|++||+- ++
T Consensus 61 ~~~~p~~~~~~~~~d~~g-~Lv~~~~g~~~~~~~~~~--~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 61 VFPSPGGFSSGALIDAGG-RLIACEHGVRLLDPDTGG--KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS 137 (307)
T ss_pred EEECCCCcccceeecCCC-eEEEEccccEEEeccCCc--eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence 3556677777777753 4 688888888888884321 112222111 11 123333332 3579999988 22
Q ss_pred -----EEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCc-EEEEecC
Q 014962 252 -----ILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGS-IAVLSCS 302 (415)
Q Consensus 252 -----v~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gN-l~vl~~~ 302 (415)
=.+|++++......++..|..-- -.+.|- |+.++..+|...| |+.+.++
T Consensus 138 ~~~~~G~lyr~~p~g~~~~l~~~~~~~~--NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 138 EERPTGSLYRVDPDGGVVRLLDDDLTIP--NGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ccCCcceEEEEcCCCCEEEeecCcEEec--CceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 25899998544444444432111 122222 4558899998755 6666655
No 197
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.63 E-value=3.4e+02 Score=26.63 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=59.2
Q ss_pred eeCCceEEEEeC--CeEEEEeeCCCCc-cceeeeeeeccce-EEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEec
Q 014962 194 PYLDRYFLASAG--NAFYVCGFPNDNP-QRVRRFAVGRTRF-MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYC 269 (415)
Q Consensus 194 ~~~g~yLl~~vg--~~l~v~~~~~~~~-~~L~~~a~~~~~~-~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~var 269 (415)
.|-|+ .||..+ ..|.+|+.++.+. ++|..+--+..|. .+......-.-|+....+.+= +..|++++++.....-
T Consensus 20 Dyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 20 DYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCCchhhhhh
Confidence 46676 454443 3478999987542 2232222222232 122233333445555555543 4556666654433221
Q ss_pred -CCCcceeEEEEeee--CC-eEEEeCCCCcEEEEecCCC
Q 014962 270 -DPSQRLVADCVLMD--VD-TAVVSDRKGSIAVLSCSDR 304 (415)
Q Consensus 270 -D~~~~~vta~~~Ld--~d-~~l~aD~~gNl~vl~~~~~ 304 (415)
-.....|.++.+-- ++ .++++-.+|++.+|+++.+
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 12344566666653 33 6788899999999998764
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.60 E-value=2.4e+02 Score=27.56 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=72.5
Q ss_pred eEEEEEEEeCCEEEEeecCCcEEEEEEEc-------cCCeEEEEecCCCcceeEEEEeeeCCeEEEeCCCCcEEEEecCC
Q 014962 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHE-------DARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 231 ~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~-------~~~~L~~varD~~~~~vta~~~Ld~d~~l~aD~~gNl~vl~~~~ 303 (415)
.+..++...+.++++|...--+.+++.+. .++++..++--.+...+..+.|-|+-.+.++| |-++-+.-++
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd--G~V~gw~W~E 90 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD--GLVYGWEWNE 90 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC--ceEEEeeehh
Confidence 35566777788888888888888887753 34677777765566677778876554555666 8888888665
Q ss_pred CcCCCCCCCCccceeeeeecCc----cccEEEeeceeccCCCCCccccccccCCCCCceEEEEeCCcceEEE
Q 014962 304 RLEDNASPECNLTPNCAYHMGE----IAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIF 371 (415)
Q Consensus 304 ~~~~~~~~~~kL~~~~~fhlGd----~Vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l 371 (415)
....... ...++...-+|.|. .||+| .+. +....|+|++-+|-|+..
T Consensus 91 ~~es~~~-K~lwe~~~P~~~~~~evPeINam---~ld-----------------P~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 91 EEESLAT-KRLWEVKIPMQVDAVEVPEINAM---WLD-----------------PSENSILFAGGDGVIYQV 141 (325)
T ss_pred hhhhccc-hhhhhhcCccccCcccCCcccee---Eec-----------------cCCCcEEEecCCeEEEEE
Confidence 3221111 12344455555542 22332 221 234568888877777654
No 199
>PHA02790 Kelch-like protein; Provisional
Probab=29.11 E-value=4.8e+02 Score=27.46 Aligned_cols=77 Identities=9% Similarity=-0.096 Sum_probs=51.7
Q ss_pred CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC
Q 014962 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV 284 (415)
Q Consensus 206 ~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~ 284 (415)
+.+..|+... ..+...+....+..-..+.+.++.|+| |- ..-.|+++.++-..++.=+.+|.-.++..+++
T Consensus 376 ~~ve~ydp~~---~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG-----~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~ 447 (480)
T PHA02790 376 TTTEYLLPNH---DQWQFGPSTYYPHYKSCALVFGRRLFLVGR-----NAEFYCESSNTWTLIDDPIYPRDNPELIIVDN 447 (480)
T ss_pred ccEEEEeCCC---CEEEeCCCCCCccccceEEEECCEEEEECC-----ceEEecCCCCcEeEcCCCCCCccccEEEEECC
Confidence 3466777764 346555555545445566678888777 42 24568888898888887777888778888887
Q ss_pred CeEEEe
Q 014962 285 DTAVVS 290 (415)
Q Consensus 285 d~~l~a 290 (415)
.-++.+
T Consensus 448 ~IYviG 453 (480)
T PHA02790 448 KLLLIG 453 (480)
T ss_pred EEEEEC
Confidence 744443
No 200
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.11 E-value=7e+02 Score=26.25 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=75.4
Q ss_pred EEEeCCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEEC-CeeEEEEeeec
Q 014962 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSL 88 (415)
Q Consensus 10 ~~i~L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~-~~~~lvVGT~~ 88 (415)
++|++..++.+|.+ +.++++.. ...|.|+|-.+.+.+.+++..+ +..+... +..++++-|..
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~--------~~~i~~yDw~~~~~i~~i~v~~------vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKS--------SDFICFYDWETGKLIRRIDVSA------VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEE--------TTEEEEE-TTT--EEEEESS-E-------EEEEE-TTSSEEEEE-S-
T ss_pred eEEcCCcccceEEc---CcEEEEEC--------CCCEEEEEhhHcceeeEEecCC------CcEEEEECCCCEEEEEeCC
Confidence 45566666666666 44554443 1249999999999999988763 3333333 45777776542
Q ss_pred CCCCCCCCCCCccccccEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeecccccccccCcCCCCCCCCCCCCcc
Q 014962 89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (415)
Q Consensus 89 ~~~~~~~~~~e~~~~~Gri~vf~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (415)
.+++++... +.+.. .|+ +|-
T Consensus 166 -----------------~i~il~~~~--------------------------~~~~~------------~~~----~g~- 185 (443)
T PF04053_consen 166 -----------------SIYILKYNL--------------------------EAVAA------------IPE----EGV- 185 (443)
T ss_dssp -----------------SEEEEEE-H--------------------------HHHHH------------BTT----TB--
T ss_pred -----------------eEEEEEecc--------------------------hhccc------------ccc----cCc-
Confidence 356666663 11110 011 121
Q ss_pred ccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeec
Q 014962 169 LEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC 248 (415)
Q Consensus 169 ~~~~~~~~L~l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~ 248 (415)
| -.+.++|+ +...|.+.+-..+= ++-...++|.- +-.. .....+..+.++|+.......++|++-|-
T Consensus 186 -e----~~f~~~~E--~~~~IkSg~W~~d~-fiYtT~~~lkY--l~~G---e~~~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 186 -E----DAFELIHE--ISERIKSGCWVEDC-FIYTTSNHLKY--LVNG---ETGIIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp -G----GGEEEEEE--E-S--SEEEEETTE-EEEE-TTEEEE--EETT---EEEEEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred -h----hceEEEEE--ecceeEEEEEEcCE-EEEEcCCeEEE--EEcC---CcceEEEcCCceEEEEEEccCCEEEEEEC
Confidence 1 26888854 45667776766664 56566665543 4331 12333556667777777766678888776
Q ss_pred CCcEEEEEEEc
Q 014962 249 RDGILFYSYHE 259 (415)
Q Consensus 249 ~~Sv~ll~y~~ 259 (415)
...+.-+..+.
T Consensus 253 ~~~v~~~~ld~ 263 (443)
T PF04053_consen 253 DGNVISYELDL 263 (443)
T ss_dssp T--EEEEE--H
T ss_pred CCCEEEEEECH
Confidence 66665555543
No 201
>PHA02790 Kelch-like protein; Provisional
Probab=28.78 E-value=4.5e+02 Score=27.68 Aligned_cols=81 Identities=5% Similarity=-0.169 Sum_probs=49.8
Q ss_pred eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCC-cEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC
Q 014962 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD-GILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV 284 (415)
Q Consensus 207 ~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~-Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~ 284 (415)
.+..|+... ..+...+....+-.-....+.+++|+| |-... .-.+..|++..++-..++.=+.+|.-.++..+++
T Consensus 332 sve~ydp~~---n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 332 SVERWFHGD---AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred ceEEEECCC---CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 356666543 235444444333334455667888766 43322 1345689999999998888777887766666776
Q ss_pred CeEEEe
Q 014962 285 DTAVVS 290 (415)
Q Consensus 285 d~~l~a 290 (415)
.-++.+
T Consensus 409 ~IYv~G 414 (480)
T PHA02790 409 RLFLVG 414 (480)
T ss_pred EEEEEC
Confidence 655544
No 202
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=28.68 E-value=5.9e+02 Score=25.28 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=51.8
Q ss_pred ceEEEEEEEecCCceEEEeee-CCceEEEEeCCe-EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcE
Q 014962 175 WQLRLAYSTTWPGMVLAICPY-LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGI 252 (415)
Q Consensus 175 ~~L~l~~~~~~~g~V~al~~~-~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv 252 (415)
+.++-+-..--+-.|.+++-- .|+||.+|.-.. +.+|.=..+.-+-+-...-+....-.+.-...|+++.-..--+||
T Consensus 50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 556655544556778887742 478666554433 556655432212233333344444455555678888888888999
Q ss_pred EEEEEEcc
Q 014962 253 LFYSYHED 260 (415)
Q Consensus 253 ~ll~y~~~ 260 (415)
++...+++
T Consensus 130 WiWe~ded 137 (312)
T KOG0645|consen 130 WIWEIDED 137 (312)
T ss_pred EEEEecCC
Confidence 99998843
No 203
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=28.03 E-value=7.5e+02 Score=26.24 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=57.7
Q ss_pred eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE----eCCEEEEeecCCcEEEEEEEccCC-----eEEEEecCCC--
Q 014962 204 AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA----HFTRIAVGDCRDGILFYSYHEDAR-----KLEQIYCDPS-- 272 (415)
Q Consensus 204 vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~----~~n~IlVGD~~~Sv~ll~y~~~~~-----~L~~varD~~-- 272 (415)
-|++|++|+|.. .+.++......-...+..|.- ..+.=+||.+..|=.+.-|+.+++ +.+.+..-..
T Consensus 220 yG~~l~vWD~~~--r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWST--RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTT--TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCC--CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 489999999986 344444333332345666654 357889999887765655654433 3333322111
Q ss_pred -------------cceeEEEEe-eeCC-eEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEE
Q 014962 273 -------------QRLVADCVL-MDVD-TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (415)
Q Consensus 273 -------------~~~vta~~~-Ld~d-~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~ 330 (415)
|--+|.+.+ ||+. .++..=..|.+..+.... | .+-...++.++|.+|.+-
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD-------P-~~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD-------P-FNPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS-------T-TS-EEEEEEE-BTTTT-B
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC-------C-CCCcEEeEEEECcEeccC
Confidence 223455544 3444 455566688888777432 2 345567899999888553
No 204
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.01 E-value=2.7e+02 Score=29.87 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred EEEEecCCCEEEEEEEeeC---------CCcceeeEEEEeCCCCcEEEEEeCCCCC-----eEEEEEEEEE--CCe--eE
Q 014962 20 KVLYHSESRLLIVMRTELN---------NDTCSSDICCVDPLSGSVLSSFKLELGE-----TGKSMELVRV--GHE--QV 81 (415)
Q Consensus 20 ~I~y~~~~~~~~v~~~~~~---------~~~~~s~i~l~d~~t~~~i~s~~l~~~E-----~~~si~~~~l--~~~--~~ 81 (415)
-++|+|+.+++.+.+..+. ++.+..+|--+|.+|++....|+.-+++ .......+.+ .++ ++
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 3589999998888875422 2456789999999999999989887763 2223333333 333 56
Q ss_pred EEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 82 LVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 82 lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
|++++- +|.+++|+-.
T Consensus 318 v~~~~K----------------~G~~~vlDr~ 333 (527)
T TIGR03075 318 LAHADR----------------NGFFYVLDRT 333 (527)
T ss_pred EEEeCC----------------CceEEEEECC
Confidence 666643 7888887766
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.48 E-value=9.2e+02 Score=27.11 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=82.3
Q ss_pred CCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE-------eCCEEEEeecCCcEEEEEEEccCCeEEEEe
Q 014962 196 LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-------HFTRIAVGDCRDGILFYSYHEDARKLEQIY 268 (415)
Q Consensus 196 ~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~-------~~n~IlVGD~~~Sv~ll~y~~~~~~L~~va 268 (415)
.|.||+.|.++..+-.+=+.. ....+...-..-+..|.+|.. ..+.|.|.|--+.++|+..+ ++++.
T Consensus 143 DGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls---G~~Ig-- 216 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS---GKQIG-- 216 (1081)
T ss_pred CCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec---ceeec--
Confidence 467788888876543332111 112322222223445666654 34789999999999998875 44433
Q ss_pred cCCCcce-eEEEE-eeeCCeEEEeCCCCcEEEEecCCCcCCCCCCCCccceeeeeecCccccEEEeeceeccCCCCCccc
Q 014962 269 CDPSQRL-VADCV-LMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALG 346 (415)
Q Consensus 269 rD~~~~~-vta~~-~Ld~d~~l~aD~~gNl~vl~~~~~~~~~~~~~~kL~~~~~fhlGd~Vt~~~~gsl~~~~~~~~~~~ 346 (415)
+|..-.. -.++. |++.+.++.+-.++-|.++.... -+|-+.++ +=+=+....+.
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G---------vrLGTvg~-----~D~WIWtV~~~---------- 272 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG---------VRLGTVGE-----QDSWIWTVQAK---------- 272 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeecC---------eEEeeccc-----cceeEEEEEEc----------
Confidence 3332221 22333 55667777777788888777433 35555444 22333333332
Q ss_pred cccccCCCCCceEEEEeCCcceEEEEec
Q 014962 347 DCLASFESSQTTIIASTLLGSIVIFIPI 374 (415)
Q Consensus 347 ~~~~~~~~~~~~ily~T~~GsIG~l~pl 374 (415)
++++.+..|+.+|+|.++--+
T Consensus 273 -------PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 -------PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred -------cCCceEEEEEccCeeehhhhH
Confidence 345678999999999887555
No 206
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.20 E-value=3.3e+02 Score=26.69 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=42.0
Q ss_pred ceEEEEEEEeCCEEEEeecCCcEEEEEEEccC----CeEEEEecCCC-cceeEEEEeeeCCeEEEeCCCCcEEEEe
Q 014962 230 RFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA----RKLEQIYCDPS-QRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 230 ~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~----~~L~~varD~~-~~~vta~~~Ld~d~~l~aD~~gNl~vl~ 300 (415)
+.-...++. .+.|+++|+.++- ++.|++.. ..+..+++|.. -.|+.++.+-. ..+|.||++.
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~-------~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP-------EGDGYLWVLS 253 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T---------TS-EEEEE
T ss_pred CCceEEECC-CCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeecc-------ccCceEEEEE
Confidence 334445554 6789999998754 47788876 57899999999 77988877722 2377777776
No 207
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=27.08 E-value=4e+02 Score=26.53 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=59.3
Q ss_pred ccCEEEEecCCCEEEEEEEeeCC--------------------------------------C-----cce-eeEEEEeCC
Q 014962 17 TPKKVLYHSESRLLIVMRTELNN--------------------------------------D-----TCS-SDICCVDPL 52 (415)
Q Consensus 17 tp~~I~y~~~~~~~~v~~~~~~~--------------------------------------~-----~~~-s~i~l~d~~ 52 (415)
.|.-|+++|+.+.+.++.+..+. . .|. +.|..++|+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 78889999999888888653210 1 222 489999999
Q ss_pred CCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCCCCCCCCCCCccccccEEEEEEEE
Q 014962 53 SGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (415)
Q Consensus 53 t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~~~~~~~~~e~~~~~Gri~vf~i~ 113 (415)
++.+..++++. ..++|++..--..+..+|..+..... ..-...+-.|.|+..++.
T Consensus 244 -G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~~----~~~~~~~~~G~lf~~~~~ 298 (307)
T COG3386 244 -GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGMS----RMLTADPLGGGLFSLRLE 298 (307)
T ss_pred -CcEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCCC----ccccccccCceEEEEecc
Confidence 99999999996 55555443321124555555444321 011246778999988887
No 208
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=26.69 E-value=1.7e+02 Score=20.19 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=22.1
Q ss_pred EEEEEEEeCCEEEEeecCCcEEEEEE
Q 014962 232 MIMLLTAHFTRIAVGDCRDGILFYSY 257 (415)
Q Consensus 232 ~i~sI~~~~n~IlVGD~~~Sv~ll~y 257 (415)
.+..+.+.||+.+|+|-..++.++-.
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDI 28 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDI 28 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEEC
Confidence 46788899999999999999977654
No 209
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=26.58 E-value=1.4e+02 Score=23.48 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCccCEEEEecCCCEEEEEEEeeCCCcceeeEEEEeCCCCcEEE
Q 014962 14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS 58 (415)
Q Consensus 14 L~~tp~~I~y~~~~~~~~v~~~~~~~~~~~s~i~l~d~~t~~~i~ 58 (415)
-..|+||++.+|+++-|.++..-... -.=.|+||.|++=+.
T Consensus 3 ~~~tqrKvL~DP~SG~Yy~vd~P~Qp----~~k~lfDPETGqYVe 43 (75)
T PF15232_consen 3 YPATQRKVLQDPESGQYYVVDAPVQP----KTKTLFDPETGQYVE 43 (75)
T ss_pred CCccCccEeecCCCCCEEEEecCCCc----ceeeeecCCCCcEEE
Confidence 34689999999998877777533221 123579999988554
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=26.26 E-value=1e+03 Score=27.13 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=31.2
Q ss_pred cceEEEEEEEecCCceEEEe-eeCCceEEEEeCCeEEEEeeCC
Q 014962 174 TWQLRLAYSTTWPGMVLAIC-PYLDRYFLASAGNAFYVCGFPN 215 (415)
Q Consensus 174 ~~~L~l~~~~~~~g~V~al~-~~~g~yLl~~vg~~l~v~~~~~ 215 (415)
.|..+.+++. -+-++++.| +-.|..|.+|.++.|.+|++..
T Consensus 498 ~W~c~~i~sy-~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 498 NWTCKAIGSY-HKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ceEEeeeecc-ccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 6899999876 566777766 3345645678999999999986
No 211
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.17 E-value=2.5e+02 Score=28.41 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=43.1
Q ss_pred eCCCccCEEEEecCCCEEEEEEEeeCC-------------CcceeeEEEEeCCCCcEEEEEeCCCC-CeEEEEE
Q 014962 13 HLGGTPKKVLYHSESRLLIVMRTELNN-------------DTCSSDICCVDPLSGSVLSSFKLELG-ETGKSME 72 (415)
Q Consensus 13 ~L~~tp~~I~y~~~~~~~~v~~~~~~~-------------~~~~s~i~l~d~~t~~~i~s~~l~~~-E~~~si~ 72 (415)
.+...||-+.++ .++++|..|+.+. .+...-|.+||-.|+++++.+.|+.. |++..+.
T Consensus 240 ~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~ 311 (335)
T TIGR03032 240 FLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVA 311 (335)
T ss_pred ECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEE
Confidence 344677888888 7788888887763 12246799999999999999999876 5554443
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.12 E-value=7.9e+02 Score=25.86 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=31.6
Q ss_pred ceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEEeecCCcEEEEEEEcc
Q 014962 188 MVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED 260 (415)
Q Consensus 188 ~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlVGD~~~Sv~ll~y~~~ 260 (415)
.+..|.. |..|.+..+..|.+|+|.. .+.++. .+.+- +..+.- .+++|++.. .+++++++|+.+
T Consensus 110 ~~~~If~--G~LL~~~~~~~i~~yDw~~--~~~i~~---i~v~~-vk~V~Ws~~g~~val~t-~~~i~il~~~~~ 175 (443)
T PF04053_consen 110 SVEKIFG--GNLLGVKSSDFICFYDWET--GKLIRR---IDVSA-VKYVIWSDDGELVALVT-KDSIYILKYNLE 175 (443)
T ss_dssp -EEEEE---SSSEEEEETTEEEEE-TTT----EEEE---ESS-E--EEEEE-TTSSEEEEE--S-SEEEEEE-HH
T ss_pred ccceEEc--CcEEEEECCCCEEEEEhhH--cceeeE---EecCC-CcEEEEECCCCEEEEEe-CCeEEEEEecch
Confidence 3444444 8734455555599999986 234444 23221 233333 355666653 668888888876
No 213
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=25.69 E-value=2.1e+02 Score=29.53 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=45.3
Q ss_pred eCCEEEEeecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeCCCCcEEEEecCC
Q 014962 239 HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 239 ~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD~~gNl~vl~~~~ 303 (415)
.+.+++++|.-+...++-|+........+-.-..++-.+++.|+-+ .+.+++|+.|..+-+....
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 3457899999999888888876643433333344445557777655 4899999999887776544
No 214
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.23 E-value=6.3e+02 Score=28.06 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=66.1
Q ss_pred cCCceEEEee-eCCceEEEE--eCCeEEEEeeCCCCcccee------eeeee-ccceEEEEEEEeCC--EEEEeecCCcE
Q 014962 185 WPGMVLAICP-YLDRYFLAS--AGNAFYVCGFPNDNPQRVR------RFAVG-RTRFMIMLLTAHFT--RIAVGDCRDGI 252 (415)
Q Consensus 185 ~~g~V~al~~-~~g~yLl~~--vg~~l~v~~~~~~~~~~L~------~~a~~-~~~~~i~sI~~~~n--~IlVGD~~~Sv 252 (415)
-++.|.||+. ..+..|+|+ .+.+|++|++.....+++. ..... ..-..+.++....+ .|+-|+..+=+
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 4577888887 555536653 5567999999842111111 11111 01114666666544 66668888877
Q ss_pred EEEEEEccCC-eEEEEecCCCcceeEEEEeeeCC-eEEEeCCCCcEEEEecCC
Q 014962 253 LFYSYHEDAR-KLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (415)
Q Consensus 253 ~ll~y~~~~~-~L~~varD~~~~~vta~~~Ld~d-~~l~aD~~gNl~vl~~~~ 303 (415)
-|+ ++..+ +...+ | -+.--|-++...|++ ++|.+-.+|-|.+..+.+
T Consensus 196 r~w--Dprt~~kimkL-r-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 196 RLW--DPRTCKKIMKL-R-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred EEe--ccccccceeee-e-ccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 665 44332 22222 2 333456566665554 789999999888887654
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=25.05 E-value=7.1e+02 Score=25.56 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=57.1
Q ss_pred CceEEEee-eCCceEEEEe-C---CeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEe-ecCCcEEEEEEEcc
Q 014962 187 GMVLAICP-YLDRYFLASA-G---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVG-DCRDGILFYSYHED 260 (415)
Q Consensus 187 g~V~al~~-~~g~yLl~~v-g---~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVG-D~~~Sv~ll~y~~~ 260 (415)
+++.+.+- =+|++|+.+. + ..|++|++.....+.+ ...............+++|+++ +-.....++.++..
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l---~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV---ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE---ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 44544442 2455344332 1 3588888864211122 2222112234555677777775 33444667778876
Q ss_pred CCeEEEEecCCCcceeEEEEeeeCC-e-EEEeCCCCcEEEEecC
Q 014962 261 ARKLEQIYCDPSQRLVADCVLMDVD-T-AVVSDRKGSIAVLSCS 302 (415)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~Ld~d-~-~l~aD~~gNl~vl~~~ 302 (415)
.+.+..+.... ...++..+-.++ . ++++|+.|+..++.++
T Consensus 281 ~~~~~~lt~~~--~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 281 GGTPSQLTSGA--GNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CCCeEeeccCC--CCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 66666654432 234455554443 3 4567888876666554
No 216
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=25.01 E-value=5.6e+02 Score=23.73 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=47.3
Q ss_pred eEEEee-eCCceEEE--EeCCeEEEEeeCCCCccceeeeeee---ccceEEEEEEEe-CCEEEEeecCCcEEEEEEEccC
Q 014962 189 VLAICP-YLDRYFLA--SAGNAFYVCGFPNDNPQRVRRFAVG---RTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDA 261 (415)
Q Consensus 189 V~al~~-~~g~yLl~--~vg~~l~v~~~~~~~~~~L~~~a~~---~~~~~i~sI~~~-~n~IlVGD~~~Sv~ll~y~~~~ 261 (415)
...|+- -.|+.|.+ +.+++|+.|++..+..+.-.+.-+. ...-.+-.|.+. ...|+|++...+ .+++|+++.
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~~~~p~G 214 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG-RIVVFDPDG 214 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT-EEEEEETTS
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC-EEEEECCCc
Confidence 344542 23553544 3577788888875432111111121 111134445443 346888887554 368899984
Q ss_pred CeEEEEecCCCcceeEEEEee
Q 014962 262 RKLEQIYCDPSQRLVADCVLM 282 (415)
Q Consensus 262 ~~L~~varD~~~~~vta~~~L 282 (415)
..+..+ .-+.+ .++++.|=
T Consensus 215 ~~~~~i-~~p~~-~~t~~~fg 233 (246)
T PF08450_consen 215 KLLREI-ELPVP-RPTNCAFG 233 (246)
T ss_dssp CEEEEE-E-SSS-SEEEEEEE
T ss_pred cEEEEE-cCCCC-CEEEEEEE
Confidence 444444 44434 78888883
No 217
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=24.83 E-value=7.2e+02 Score=24.95 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=60.8
Q ss_pred CceEEE--eeeCCceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEE---ccC
Q 014962 187 GMVLAI--CPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH---EDA 261 (415)
Q Consensus 187 g~V~al--~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~---~~~ 261 (415)
..|.+| ++.++..|=.+.-..|++|+++..+.+-+... ..-.+...+..|-..++|-=-+.+.++..+ ..+
T Consensus 101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 345444 46666623355666899999985322222110 011344444455554444444455555443 333
Q ss_pred CeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEe
Q 014962 262 RKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 262 ~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~ 300 (415)
-.-..+-..... ..+.++|-. ...++.++..+.++++.
T Consensus 177 F~tf~i~~~~~~-ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 177 FTTFSITDNDEA-EWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred ceeEccCCCCcc-ceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 333333333334 445889864 45899999999999988
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=24.71 E-value=7.4e+02 Score=25.08 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=36.6
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccceeeeee
Q 014962 179 LAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAV 226 (415)
Q Consensus 179 l~~~~~~~g~V~al~~~~g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~ 226 (415)
.+-+-+++++|.+|+--.++ |++..-++++||.+..+ .++++....
T Consensus 87 ~i~el~f~~~I~~V~l~r~r-iVvvl~~~I~VytF~~n-~k~l~~~et 132 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDR-IVVVLENKIYVYTFPDN-PKLLHVIET 132 (346)
T ss_pred EEEEEEeccceeeEEEcCCe-EEEEecCeEEEEEcCCC-hhheeeeec
Confidence 35567789999999988889 99999999999999853 455655433
No 219
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=24.58 E-value=1.8e+02 Score=27.55 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=28.3
Q ss_pred EEeeeC-CceEEEEeCCeEEEEeeCCCCccceeeeeeeccceEEEEEEE--eCCEEEE
Q 014962 191 AICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAV 245 (415)
Q Consensus 191 al~~~~-g~yLl~~vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~--~~n~IlV 245 (415)
++|.-. +..++++.|.+|.+|++..+..+.+-. +.+--.+.+|.. .||+|+.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~---F~Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCT---FSTVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEE---EcchhheeEEEeccccceEEE
Confidence 344333 663355889999999998432232322 222224555543 4666655
No 220
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.51 E-value=4.6e+02 Score=27.54 Aligned_cols=110 Identities=9% Similarity=0.121 Sum_probs=59.1
Q ss_pred eeCCceEEEEeCCe-EEEEeeCCCCccceee-eeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCeEEEEecCC
Q 014962 194 PYLDRYFLASAGNA-FYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDP 271 (415)
Q Consensus 194 ~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~-~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~varD~ 271 (415)
+-+|+||+-|.-.+ ..+|....|..-.|.+ +..+.-+..-..-.....+++..-.-+.+.+ |+.+.+.+...-...
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l--wDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL--WDVDTGDLRHLYPSG 310 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee--ccCCcchhhhhcccC
Confidence 34799877554433 6778777654212222 2222222222222345566666666666654 444444443333333
Q ss_pred CcceeEEEEee-eCCeEEEeCCCCcEEEEecCCCc
Q 014962 272 SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRL 305 (415)
Q Consensus 272 ~~~~vta~~~L-d~d~~l~aD~~gNl~vl~~~~~~ 305 (415)
....+++|.-. |.-.++++-.++.|..+..+.+.
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 45567777754 44467777777777777766543
No 221
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=24.03 E-value=7.2e+02 Score=24.71 Aligned_cols=156 Identities=16% Similarity=0.067 Sum_probs=80.1
Q ss_pred CceEEEe-eeCCceEEEEeCCe--EEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962 187 GMVLAIC-PYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (415)
Q Consensus 187 g~V~al~-~~~g~yLl~~vg~~--l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~ 263 (415)
-|++.|. ..+|. ||.+++.. .-||---+ .++|-.+.-+........|+..-.+++-|-+-+|+-|+.. +.++
T Consensus 11 RplTqiKyN~eGD-LlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv--~tGk 85 (327)
T KOG0643|consen 11 RPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV--ETGK 85 (327)
T ss_pred cccceEEecCCCc-EEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc--CCCc
Confidence 3444454 34577 78776655 44443322 2456544433333344444445678999999999977654 4454
Q ss_pred EEEEecCCCcceeEEEEeeeCC--eEEEeCC----CCcEEEEecCCCcCC--CCCCCCccceeeeeecCccccEEEeece
Q 014962 264 LEQIYCDPSQRLVADCVLMDVD--TAVVSDR----KGSIAVLSCSDRLED--NASPECNLTPNCAYHMGEIAVSIRKGSF 335 (415)
Q Consensus 264 L~~varD~~~~~vta~~~Ld~d--~~l~aD~----~gNl~vl~~~~~~~~--~~~~~~kL~~~~~fhlGd~Vt~~~~gsl 335 (415)
-....+-.. .|-.++|--.+ -+++.|. .+-+.+++.....++ +++|-.++.... +-+|+..-+
T Consensus 86 ~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-----skit~a~Wg-- 156 (327)
T KOG0643|consen 86 QLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-----SKITSALWG-- 156 (327)
T ss_pred EEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-----cceeeeeec--
Confidence 444444433 44455663223 2334444 234666665432211 122211222211 233333222
Q ss_pred eccCCCCCccccccccCCCCCceEEEEeCCcceEEEEec
Q 014962 336 IYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI 374 (415)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~ily~T~~GsIG~l~pl 374 (415)
.....|++|-.+|+|...--.
T Consensus 157 ------------------~l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 157 ------------------PLGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred ------------------ccCCEEEEecCCCcEEEEEcc
Confidence 234789999999999876554
No 222
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=23.72 E-value=8.6e+02 Score=25.46 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCceEEE--eeeCCceEEEEeC--CeEEEEeeCCCCc-ccee-eeeeeccc---eEEE----------EEEEeCCEEEEe
Q 014962 186 PGMVLAI--CPYLDRYFLASAG--NAFYVCGFPNDNP-QRVR-RFAVGRTR---FMIM----------LLTAHFTRIAVG 246 (415)
Q Consensus 186 ~g~V~al--~~~~g~yLl~~vg--~~l~v~~~~~~~~-~~L~-~~a~~~~~---~~i~----------sI~~~~n~IlVG 246 (415)
.++|..+ |+|++. .+|+.+ .+|+||.+-.... ..|. .+.....+ .-++ --...+|.|.+.
T Consensus 81 t~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 4666555 589998 665544 3488888875321 0011 00000000 0011 111134566665
Q ss_pred ecCCcEEEEEEEccCCeEEEEecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~ 300 (415)
++-.+..++.. | +|--|.++.|= |...++.+-++..|.++.
T Consensus 160 nv~tgeali~l------------~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 160 NVGTGEALITL------------D-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred eccCCceeeec------------C-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 55555544432 1 67778888874 445677777787887776
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=23.04 E-value=5.8e+02 Score=23.20 Aligned_cols=97 Identities=7% Similarity=0.008 Sum_probs=54.4
Q ss_pred cCCceEEEeee-CCceEEEEeCC---eEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCc---EEEEEE
Q 014962 185 WPGMVLAICPY-LDRYFLASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG---ILFYSY 257 (415)
Q Consensus 185 ~~g~V~al~~~-~g~yLl~~vg~---~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S---v~ll~y 257 (415)
-+|+|.+++-- +|..+++..|. ++.+|+.+. +.+.. +...+...+.-...|++|++|..-.. +.| |
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~--w 130 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFS--FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEF--W 130 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEe--ecCCCceEEEECCCCCEEEEEEccCCCcEEEE--E
Confidence 35778888733 35436666553 689999963 23333 22333344555678999999875432 555 5
Q ss_pred EccCCeEEEEecCCCcceeEEEEeeeC-CeEEEeC
Q 014962 258 HEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSD 291 (415)
Q Consensus 258 ~~~~~~L~~varD~~~~~vta~~~Ld~-d~~l~aD 291 (415)
+..+. ..++....+ .++.++.-.+ ..++.+.
T Consensus 131 d~~~~--~~i~~~~~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 131 DVRKK--KKISTFEHS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred ECCCC--EEeeccccC-cEEEEEEcCCCCEEEEEE
Confidence 55443 334443333 3566666433 3555554
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=22.86 E-value=1.2e+03 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=21.6
Q ss_pred CceEEEe-eeCCceEEEEeCCe-EEEEeeCCCCccceeeee
Q 014962 187 GMVLAIC-PYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFA 225 (415)
Q Consensus 187 g~V~al~-~~~g~yLl~~vg~~-l~v~~~~~~~~~~L~~~a 225 (415)
..|.++. ...|-||+-|--.. +.+|.++...++.|.+.+
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg 292 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG 292 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCcccccccC
Confidence 3455554 34577666544333 567888765455565533
No 225
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=22.46 E-value=2.5e+02 Score=28.74 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEEeecCCcEEEEEEEccCCe
Q 014962 186 PGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (415)
Q Consensus 186 ~g~V~al~~~~g~yLl~~--vg~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~Sv~ll~y~~~~~~ 263 (415)
.|.|.|+. |..+ ++++ ...+|+||+|+.. +-|.. -++. .=.+..+....++++-..--+|+.++......
T Consensus 237 tGSVLCLq-yd~r-viisGSSDsTvrvWDv~tg--e~l~t-lihH-ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps-- 308 (499)
T KOG0281|consen 237 TGSVLCLQ-YDER-VIVSGSSDSTVRVWDVNTG--EPLNT-LIHH-CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT-- 308 (499)
T ss_pred CCcEEeee-ccce-EEEecCCCceEEEEeccCC--chhhH-Hhhh-cceeEEEEEeCCEEEEecCCceeEEEeccCch--
Confidence 48888875 7788 6654 4456999999862 22332 2222 12566677777777777777787766554321
Q ss_pred EEEEecCCCcceeEEEEeeeC--CeEEEeCCCCcEEEEe
Q 014962 264 LEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLS 300 (415)
Q Consensus 264 L~~varD~~~~~vta~~~Ld~--d~~l~aD~~gNl~vl~ 300 (415)
.+.++-.--..-.|+..+|. ..++.|-.+..|.+..
T Consensus 309 -~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 309 -DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred -HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 11112211122233344443 3555566666666655
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=21.82 E-value=8.7e+02 Score=24.91 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=56.0
Q ss_pred CceEEEeee-CCceEEEEe----CCeEEEEeeCCCCccceeeeeeeccceEEEEEEEeCCEEEE-eecCCcEEEEEEEcc
Q 014962 187 GMVLAICPY-LDRYFLASA----GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRDGILFYSYHED 260 (415)
Q Consensus 187 g~V~al~~~-~g~yLl~~v----g~~l~v~~~~~~~~~~L~~~a~~~~~~~i~sI~~~~n~IlV-GD~~~Sv~ll~y~~~ 260 (415)
+++.+.+-- .|+.|+... ...|++|++... ..+.................++.|++ .+-.....++.++..
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 444443322 455354433 245888888642 22222322222233445556777765 444455677888776
Q ss_pred CCeEEEEecCCCcceeEEEEeeeC-Ce-EEEeCCCCcEEEEecC
Q 014962 261 ARKLEQIYCDPSQRLVADCVLMDV-DT-AVVSDRKGSIAVLSCS 302 (415)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~Ld~-d~-~l~aD~~gNl~vl~~~ 302 (415)
.+.+..+..+. ...+...+-.+ +. +.++|+.|+..++.++
T Consensus 273 ~~~~~~lt~~~--~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 273 GSGLRRLTQSS--GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CCCcEECCCCC--CCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 66666665432 12233444433 33 3467776665555443
No 227
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=21.74 E-value=7.5e+02 Score=24.08 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=39.9
Q ss_pred EeeeCCceEEEEeC-------CeEEEEeeCCCCccceeeeeeec-cceEEEEEEEeCCEEEE-eecC--CcEEEEEEEcc
Q 014962 192 ICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHFTRIAV-GDCR--DGILFYSYHED 260 (415)
Q Consensus 192 l~~~~g~yLl~~vg-------~~l~v~~~~~~~~~~L~~~a~~~-~~~~i~sI~~~~n~IlV-GD~~--~Sv~ll~y~~~ 260 (415)
.+.++|+ |.+.-| +.++.|++.. ..+...+... .+-.-..+.+.++.|+| |-.. ....++.|+++
T Consensus 119 ~~~~~~~-iYv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 119 ACYKDGT-LYVGGGNRNGKPSNKSYLFNLET---QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred EEEECCE-EEEEeCcCCCccCceEEEEcCCC---CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 3445565 444333 3578888875 2354443221 11122233456666666 3221 12345789999
Q ss_pred CCeEEEEecC
Q 014962 261 ARKLEQIYCD 270 (415)
Q Consensus 261 ~~~L~~varD 270 (415)
.++-..++..
T Consensus 195 ~~~W~~~~~~ 204 (323)
T TIGR03548 195 KNQWQKVADP 204 (323)
T ss_pred CCeeEECCCC
Confidence 9888887753
No 228
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=21.30 E-value=8.4e+02 Score=27.21 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=60.3
Q ss_pred eeeCCceEEEEeCCe--EEEEeeCCCCcccee-e-eeeeccceEEEEEE--EeCCEEEEeecCCcEEEEEEEccCCeEEE
Q 014962 193 CPYLDRYFLASAGNA--FYVCGFPNDNPQRVR-R-FAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (415)
Q Consensus 193 ~~~~g~yLl~~vg~~--l~v~~~~~~~~~~L~-~-~a~~~~~~~i~sI~--~~~n~IlVGD~~~Sv~ll~y~~~~~~L~~ 266 (415)
.+|.+. ||+..... |.+|.+.++-.+.|- . .-+...+..+-.+. .--|-|++..+.-++.++.... ++.+.+
T Consensus 88 spF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~st-qk~~~e 165 (1012)
T KOG1445|consen 88 SPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIST-QKTAVE 165 (1012)
T ss_pred cccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEccc-Cceeec
Confidence 478888 77655444 778888753334441 1 12223333444443 3456788888888886665433 445566
Q ss_pred EecCCCcceeEEEEee-eCCeEEEeCCCCcEEEEe
Q 014962 267 IYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (415)
Q Consensus 267 varD~~~~~vta~~~L-d~d~~l~aD~~gNl~vl~ 300 (415)
++......+ ++.-- |...+..++++.||.+|.
T Consensus 166 l~~h~d~vQ--Sa~WseDG~llatscKdkqirifD 198 (1012)
T KOG1445|consen 166 LSGHTDKVQ--SADWSEDGKLLATSCKDKQIRIFD 198 (1012)
T ss_pred ccCCchhhh--ccccccCCceEeeecCCcceEEeC
Confidence 655544332 33322 334667789999999987
No 229
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=21.09 E-value=1e+03 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=33.2
Q ss_pred eeEEEEeC---CCCcEEEEEeCCCCCeEEEEEEEEECCeeEEEEeeecCC
Q 014962 44 SDICCVDP---LSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSS 90 (415)
Q Consensus 44 s~i~l~d~---~t~~~i~s~~l~~~E~~~si~~~~l~~~~~lvVGT~~~~ 90 (415)
..|.++|. .+.+.+..++++.. ..-+.+.++..+|+|+....
T Consensus 31 ~~l~Iida~p~~~~~~~s~I~~~~~-----~~eLyl~gdrLvVi~~~~~~ 75 (521)
T PF09826_consen 31 GRLYIIDAYPAEEMKVVSRIDLDGS-----PQELYLDGDRLVVIGSSYEY 75 (521)
T ss_pred CEEEEEECCCchhceEEEEEecCCC-----hhheEEcCCEEEEEEecccc
Confidence 56888887 56778899999877 55667788899999988653
No 230
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=20.94 E-value=79 Score=21.19 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.5
Q ss_pred eEEEeCCCCcEEEEec
Q 014962 286 TAVVSDRKGSIAVLSC 301 (415)
Q Consensus 286 ~~l~aD~~gNl~vl~~ 301 (415)
.=|+.|..||+++.-.
T Consensus 16 ~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGY 31 (38)
T ss_pred EEEEECCCCCEEEEEe
Confidence 3477799999998764
No 231
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.80 E-value=5.7e+02 Score=25.01 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=31.5
Q ss_pred eeeEEEEeCCCCcEEEEEeCCCCCeEEEEEEEEECCe--eEEEEeeecC
Q 014962 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHE--QVLVVGTSLS 89 (415)
Q Consensus 43 ~s~i~l~d~~t~~~i~s~~l~~~E~~~si~~~~l~~~--~~lvVGT~~~ 89 (415)
.+.|.-+||.|++.+..+.|+ --.++ +|-|+++ ..+.|-|+..
T Consensus 232 g~~V~~~dp~tGK~L~eiklP-t~qit---sccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLP-TPQIT---SCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcC-CCceE---EEEecCCCccEEEEEehhc
Confidence 467999999999999999999 33444 4456665 6666766643
No 232
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.58 E-value=1e+03 Score=27.74 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=64.3
Q ss_pred EecCCceEEEeeeC-CceEEEEeCCe--EEEEeeCCCCc--------cceeeeeeeccceEEEEEEEeCCEEEEeecCCc
Q 014962 183 TTWPGMVLAICPYL-DRYFLASAGNA--FYVCGFPNDNP--------QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG 251 (415)
Q Consensus 183 ~~~~g~V~al~~~~-g~yLl~~vg~~--l~v~~~~~~~~--------~~L~~~a~~~~~~~i~sI~~~~n~IlVGD~~~S 251 (415)
.+-+|||.+|+=.. +- |.++-|.. |.||+++...- .-+|.+.|+..-.. |+-+-=-+.
T Consensus 48 deHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW----------IlSASDDQT 116 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW----------ILSASDDQT 116 (1202)
T ss_pred hccCCccceeeecCCCC-eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce----------EEEccCCCe
Confidence 45689999999443 35 77887765 78888875210 01333333332222 333222334
Q ss_pred EEEEEEEccCCeEEEEecCCCcceeEEEEeee-CCeEEEeCCCCcEEEEec
Q 014962 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC 301 (415)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~Ld-~d~~l~aD~~gNl~vl~~ 301 (415)
+-++.|+ ..+.+.+..- +...|+|+.|.. +|.++.|--+..+.|...
T Consensus 117 IrIWNwq--sr~~iavltG-HnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 117 IRIWNWQ--SRKCIAVLTG-HNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred EEEEecc--CCceEEEEec-CceEEEeeccCCccceEEEecccceEEEEee
Confidence 4446666 4555555544 567899999986 778888888888888763
Done!