BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014963
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 212/357 (59%), Positives = 267/357 (74%), Gaps = 4/357 (1%)
Query: 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ 118
++P MGWNSWNHF+C INE I++ ADALV++GL+KLGY+YVNIDDCW E RD GN
Sbjct: 7 RTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFV 66
Query: 119 AKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDY 178
TFPSGIKALADYVH+KGLKLG+YS AG TCS +MPGSL +EEQD KTFA WGVDY
Sbjct: 67 PNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDY 126
Query: 179 LKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDI 238
LKYDNC G M+RY M+ A+ G+ I++SLCEWG +PA W ++GNSWRTTGDI
Sbjct: 127 LKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDI 186
Query: 239 TDTFESVMSRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLL 298
D + S+ SRAD N+ +A YA PGGWNDPDMLEVGNGGM++ EY HFS+WA++KAPLL+
Sbjct: 187 ADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLI 246
Query: 299 GCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTD--VEIWTAPLSGYRFAVLIVNR 356
GCDVR++++ T +I+ N EVIA+NQD LGVQ KKV++D +E+W PLS R AV++ NR
Sbjct: 247 GCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNR 306
Query: 357 DQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQP 413
+ A +T H + G+ +VTARDLW H + G +SA++ PH CKMY+L P
Sbjct: 307 QSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQ--GQISASVAPHDCKMYVLTP 361
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 160/375 (42%), Positives = 217/375 (57%), Gaps = 39/375 (10%)
Query: 60 SPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA 119
+P MGWN+WN + C+++E ++ AA A+ SSGL LGY YV IDDCW + R+ + L A
Sbjct: 8 TPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKTLLA 67
Query: 120 KNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYL 179
FP GIK L D +H+ GLK G+YSSAG TC + SLGYE+ DAKT+A WG+DYL
Sbjct: 68 DPTKFPRGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHI-ASLGYEDIDAKTWAKWGIDYL 126
Query: 180 KYDNCYTDGSK-----PMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRT 234
KYDNCY G DRY M AL K GRP+ YSLC WG+ P + + NSWR
Sbjct: 127 KYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFASTISNSWRI 186
Query: 235 TGDITDTFE--------------------SVMSRADANEVYADYARPGGWNDPDMLEVGN 274
+GD+ D F SVM+ + + AR GGWND DMLEVGN
Sbjct: 187 SGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGN 246
Query: 275 GGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKK-- 332
GGM ++EY +H+++WA K+PL+LG DV N+T T +II NKEVIA+NQD A +
Sbjct: 247 GGMNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKEVIAVNQDSSFSPANRIW 306
Query: 333 VRTDVEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDF------GIPPKTSVTARDLWEH 386
V+ D ++++ L+ V+++N A +T +D + S+ RDLW+
Sbjct: 307 VKGDQQLFSGNLANNTQVVILLNAGDSAAKMTATWDDIWVYNLPNVDSSRSIEVRDLWKQ 366
Query: 387 KTLETPLAGNLSANL 401
K+L GN S ++
Sbjct: 367 KSL-----GNFSNHI 376
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 206/382 (53%), Gaps = 29/382 (7%)
Query: 59 KSPPMGWNSWNHFWCDIN----------EDIVKAAADALVSSGLSKLGYEYVNIDDCWGE 108
++PPMGW +W F C++N E + AD + G +LGY+Y+NIDDCW
Sbjct: 7 RTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAA 66
Query: 109 QVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168
+ RD G L FP GIKALADYVH++GLKLG+Y G TC +L EQDA
Sbjct: 67 KQRDAEGRLVPDPERFPRGIKALADYVHARGLKLGIYGDLGRLTCGGYPGTTLDRVEQDA 126
Query: 169 KTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEW----GDMHP--- 221
+TFA WGVD LK D CY+ G + YP M RAL GRPI YS C W G + P
Sbjct: 127 QTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYS-CSWPAYQGGLPPKVN 185
Query: 222 -ALWGFQVGNSWRTTGDITDTFESVMSRAD----ANEVYADYARPGGWNDPDMLEVGNGG 276
L G ++ N WR DI D+++SV+S D +V +A PG WNDPDML +GN G
Sbjct: 186 YTLLG-EICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLIIGNFG 244
Query: 277 MTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTD 336
++ ++ +LW I APLL+ D+R ++ I+ N+ +I INQDPLG+Q +++ +
Sbjct: 245 LSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQNRLMIQINQDPLGIQGRRIIKE 304
Query: 337 ---VEIWTAPLSGYRFA-VLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETP 392
+E++ PLS A V R P TT L G P + +D++ K +
Sbjct: 305 GSHIEVFLRPLSQAASALVFFSRRTDMPFRYTTSLAKLGFPMGAAYEVQDVYSGKIISGL 364
Query: 393 LAG-NLSANLDPHTCKMYLLQP 413
G N + ++P M+ L P
Sbjct: 365 KTGDNFTVIINPSGVVMWYLCP 386
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/327 (43%), Positives = 191/327 (58%), Gaps = 33/327 (10%)
Query: 59 KSPPMGWNSWNHFWCD----------INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGE 108
++P MGW W F C+ I+E + A+ +VS G GYEY+ IDDCW
Sbjct: 7 RTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMA 66
Query: 109 QVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168
RD G LQA FP GI+ LA+YVHSKGLKLG+Y+ G TC+ PGS GY + DA
Sbjct: 67 PQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDA 125
Query: 169 KTFALWGVDYLKYDNCYTDGSKPM-DRYPIMTRALMKAGRPIYYSLCEWGDMHPA-LWGF 226
+TFA WGVD LK+D CY D + + D Y M+ AL + GR I YS C W PA +W F
Sbjct: 126 QTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CSW----PAYMWPF 180
Query: 227 ---------QVGNSWRTTGDITDTFESVMSRAD----ANEVYADYARPGGWNDPDMLEVG 273
Q N WR DI D+++S+ S D E D A PGGWNDPDML +G
Sbjct: 181 QKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIG 240
Query: 274 NGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKV 333
N G++ ++ + +LWAI APL + D+R+++ ++ +K+VIAINQDPLG Q ++
Sbjct: 241 NFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQL 300
Query: 334 RT--DVEIWTAPLSGYRFAVLIVNRDQ 358
R + E+W PLSG +AV ++NR +
Sbjct: 301 RQGDNFEVWERPLSGLAWAVAMINRQE 327
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 190/326 (58%), Gaps = 31/326 (9%)
Query: 59 KSPPMGWNSWNHFWCD----------INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGE 108
++P MGW W F C+ I+E + A+ +VS G GYEY+ IDDCW
Sbjct: 7 RTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMA 66
Query: 109 QVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168
RD G LQA FP GI+ LA+YVHSKGLKLG+Y+ G TC+ PGS GY + DA
Sbjct: 67 PQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDA 125
Query: 169 KTFALWGVDYLKYDNCYTDGSKPM-DRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGF- 226
+TFA WGVD LK+D CY D + + D Y M+ AL + GR I YS CEW +W F
Sbjct: 126 QTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEW---PLYMWPFQ 181
Query: 227 --------QVGNSWRTTGDITDTFESVMSRAD----ANEVYADYARPGGWNDPDMLEVGN 274
Q N WR DI D+++S+ S D E D A PGGWNDPDML +GN
Sbjct: 182 KPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGN 241
Query: 275 GGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVR 334
G++ ++ + +LWAI APL + D+R+++ ++ +K+VIAINQDPLG Q ++R
Sbjct: 242 FGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLR 301
Query: 335 T--DVEIWTAPLSGYRFAVLIVNRDQ 358
+ E+W PLSG +AV ++NR +
Sbjct: 302 QGDNFEVWERPLSGLAWAVAMINRQE 327
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 189/326 (57%), Gaps = 31/326 (9%)
Query: 59 KSPPMGWNSWNHFWCD----------INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGE 108
++P MGW W F C+ I+E + A+ +VS G GYEY+ IDDCW
Sbjct: 7 RTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMA 66
Query: 109 QVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168
RD G LQA FP GI+ LA+YVHSKGLKLG+Y+ G TC+ PGS GY + DA
Sbjct: 67 PQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDA 125
Query: 169 KTFALWGVDYLKYDNCYTDGSKPM-DRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGF- 226
+TFA WGVD LK+ CY D + + D Y M+ AL + GR I YS CEW +W F
Sbjct: 126 QTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEW---PLYMWPFQ 181
Query: 227 --------QVGNSWRTTGDITDTFESVMSRAD----ANEVYADYARPGGWNDPDMLEVGN 274
Q N WR DI D+++S+ S D E D A PGGWNDPDML +GN
Sbjct: 182 KPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGN 241
Query: 275 GGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVR 334
G++ ++ + +LWAI APL + D+R+++ ++ +K+VIAINQDPLG Q ++R
Sbjct: 242 FGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLR 301
Query: 335 T--DVEIWTAPLSGYRFAVLIVNRDQ 358
+ E+W PLSG +AV ++NR +
Sbjct: 302 QGDNFEVWERPLSGLAWAVAMINRQE 327
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 189/349 (54%), Gaps = 41/349 (11%)
Query: 60 SPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA 119
+P MGW++WN F CD++E ++ AD + GL +GY+Y+ +DDCW RD +G L A
Sbjct: 29 TPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSG-RDSDGFLVA 87
Query: 120 KNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYL 179
FP+G+ +AD++H+ GMYSSAG YTC+ PGSLG EE+DA+ FA VDYL
Sbjct: 88 DEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANNRVDYL 146
Query: 180 KYDNCYTDGSK-----PMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRT 234
KYDNCY G RY M+ AL K GRP++YSLC WG WG + NSWR
Sbjct: 147 KYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRM 206
Query: 235 TGDITDTFESVMSRA--DANEVYADYAR--------------------PGGWNDPDMLEV 272
+GD+T F SR D +E YA GGWND D LEV
Sbjct: 207 SGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEV 266
Query: 273 GNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKK 332
G G +T DE HFS+WA+ K+PL++G +V NL + I VIAINQD G+ A +
Sbjct: 267 GVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATR 326
Query: 333 V------------RTDVEIWTAPLSGYRFAVLIVNRDQWPANVTTHLED 369
V + ++++W+ PL V ++N + T LE+
Sbjct: 327 VWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEE 375
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 188/349 (53%), Gaps = 41/349 (11%)
Query: 60 SPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA 119
+P MGW++WN F CD++E ++ AD + GL +GY+Y+ +DDCW RD +G L A
Sbjct: 29 TPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSG-RDSDGFLVA 87
Query: 120 KNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYL 179
FP+G+ +AD++H+ GMYSSAG YTC+ PGSLG EE+DA+ FA VDYL
Sbjct: 88 DEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANNRVDYL 146
Query: 180 KYDNCYTDGSK-----PMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRT 234
KY NCY G RY M+ AL K GRP++YSLC WG WG + NSWR
Sbjct: 147 KYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIANSWRM 206
Query: 235 TGDITDTFESVMSRA--DANEVYADYAR--------------------PGGWNDPDMLEV 272
+GD+T F SR D +E YA GGWND D LEV
Sbjct: 207 SGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEV 266
Query: 273 GNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKK 332
G G +T DE HFS+WA+ K+PL++G +V NL + I VIAINQD G+ A +
Sbjct: 267 GVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNGIPATR 326
Query: 333 V------------RTDVEIWTAPLSGYRFAVLIVNRDQWPANVTTHLED 369
V + ++++W+ PL V ++N + T LE+
Sbjct: 327 VWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEE 375
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 194/382 (50%), Gaps = 28/382 (7%)
Query: 59 KSPPMGWNSWNHFWCDIN----------EDIVKAAADALVSSGLSKLGYEYVNIDDCWGE 108
++PPMGW +W F C+IN E + AD + G +GY Y+NIDDCW
Sbjct: 7 QTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIG 66
Query: 109 QVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168
RD +G L FP GI LADYVHS GLKLG+Y+ G +TC +L QDA
Sbjct: 67 G-RDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDA 125
Query: 169 KTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEW----GDMHPAL- 223
+TFA W VD LK D C++ + YP M AL GRPI +S C W G + P +
Sbjct: 126 QTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFS-CSWPAYEGGLPPRVQ 184
Query: 224 --WGFQVGNSWRTTGDITDTFESVMS----RADANEVYADYARPGGWNDPDMLEVGNGGM 277
+ N WR DI D++ SV+S + ++ A PG WNDPDML +GN G+
Sbjct: 185 YSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGL 244
Query: 278 TKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTD- 336
+ ++ +LW + APLL+ D+R ++ MDI+ N +I INQDPLG+Q +++ +
Sbjct: 245 SLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEK 304
Query: 337 --VEIWTAPLSGYRFAVLIVN-RDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPL 393
+E++ PLS A++ + R P + L A+D++ +
Sbjct: 305 SLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSGDIISGLR 364
Query: 394 -AGNLSANLDPHTCKMYLLQPI 414
N + ++P M+ L PI
Sbjct: 365 DETNFTVIINPSGVVMWYLYPI 386
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 188/360 (52%), Gaps = 26/360 (7%)
Query: 60 SPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA 119
S PMGW SWN F I+ ++K DA V++GL GY Y+NID+ W + RD GN+
Sbjct: 11 SAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSAGNITV 70
Query: 120 KNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMP---------GSLGYEEQDAKT 170
A +P G+ A+ Y+HSKGLK G+Y+ AG C P GS G+ +QD
Sbjct: 71 DTAEWPGGMSAITAYIHSKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQ 130
Query: 171 FALWGVDYLKYDNCYTD--GSKPMDRYPIMTRALMKA----GRPIYYSLCEWGDMHPALW 224
F+ WG D++K D C D G Y ++ A+ +A GRP+ S+C WG +P W
Sbjct: 131 FSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPWNW 190
Query: 225 GFQVGNSWRTTGDI-----TDTFESVMSRADANEVYADYARPGGWNDPDMLEVGNGGMTK 279
WRT+ DI + S++S D ++ G +NDPDML VG G T
Sbjct: 191 AAGQAPLWRTSTDIIYYGNQPSMTSLLSNFD-QTLHPTAQHTGYYNDPDMLMVGMDGFTA 249
Query: 280 DEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTD--- 336
+ H +LWAIS APLL G D+ +T +T I+ N EVIA++QD G+Q KV D
Sbjct: 250 AQNRTHMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGVKVAEDTTG 309
Query: 337 VEIWTAPLSGY-RFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAG 395
++ + LSG AV+++NR ++T D G+ S T RDLW + + T G
Sbjct: 310 LQAYGKVLSGTGNRAVVLLNRTSAAHDITVRWSDLGL-TNASATVRDLWARQNVGTSATG 368
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 181/383 (47%), Gaps = 54/383 (14%)
Query: 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ 118
K P +GWNSWN + CDI+E +AA+ +VSSGL GY YVNIDDCW + +G++
Sbjct: 10 KVPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIA 69
Query: 119 AKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDY 178
FP GI LA VH+ GLKLG+YS+AG TC+ P SLGYE+ DA FA WGVDY
Sbjct: 70 PNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAG-YPASLGYEDVDAADFADWGVDY 128
Query: 179 LKYDNCYTDG---------------------------------------SKPMDRYPIMT 199
LKYDNC SK +R+ M
Sbjct: 129 LKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMR 188
Query: 200 RALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADANEVYADYA 259
AL K I S+C WG WG G SWR + DI+ + SV + N +
Sbjct: 189 NALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFKLNSV 248
Query: 260 RPGGWNDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVI 319
G ND DMLEVGNG +T E HF+LWA K+PLL+G D+ L+++ ++++ NK ++
Sbjct: 249 DFWGHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKHLL 308
Query: 320 AINQDPLGVQAK-------------KVRTDVEIWTAPLSGYRFAVLIVNRDQWPANVTTH 366
A NQD + Q V E W P S VL+VN A
Sbjct: 309 AFNQDSVYGQPATPYKWGINPDWTFNVTYPAEFWAGPSSKGHL-VLMVNTLDITATKEAK 367
Query: 367 LEDFGIPPKTSVTARDLWEHKTL 389
+ RD+W K L
Sbjct: 368 WNEIPGLSAGHYEVRDVWSDKDL 390
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 161/424 (37%), Gaps = 73/424 (17%)
Query: 60 SPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV--------- 110
+PP GWNSW+ + + E+ V A+ ++ L K G+EY+ +D W E
Sbjct: 11 TPPXGWNSWDCYGASVTEEEVLGNAE-YXANHLKKYGWEYIVVDIQWYEPTANSSAYNPF 69
Query: 111 ----RDENGNLQAKNATFPS-----GIKALADYVHSKGLKLGMYSSAG------------ 149
DE G L FPS G K L+D +H GLK G++ G
Sbjct: 70 APLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYENSPV 129
Query: 150 ----------------------YYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTD 187
Y G+ Y + +A WGVD++K D+
Sbjct: 130 LGSTKTAREIAHTNSICPWNTDXYGVDPTKEGAQSYYNSLFELYAQWGVDFVKVDDIAAS 189
Query: 188 G--SKPMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQV-GNSWRTTGDITDTFES 244
++ + RA+ GRP SL F+ N WR T D D +
Sbjct: 190 RLYDTHLEEIKXIQRAIQACGRPXVLSLSPGPAPIKYAHHFKTNANXWRITDDFWDDWSL 249
Query: 245 VMSRADANEVYADYARPGGWNDPDMLEVGNGGM--------------TKDEYIIHFSLWA 290
+ + EV+ + G W D L +G+ G+ TKDE + +LWA
Sbjct: 250 LYQXFERCEVWEKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWTRFTKDEQLTXXNLWA 309
Query: 291 ISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTDVEIWTAPLSGYRFA 350
I +PL G ++R+ + T+ ++ N+ +++INQ + + D W A
Sbjct: 310 ICHSPLXFGGELRDNDEWTLSLLTNEGILSINQKSVLNRFVYREEDKVAWAANGRNGEAY 369
Query: 351 VLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLET-PLAGNLSANLDPHTCKMY 409
V + N + L+ GI +V ++W+ L++ + + L PH
Sbjct: 370 VALFNLHDQQKTLQFRLDXVGI--XETVQLFNVWDRSFLQSLAPSESFQIELKPHQSXXL 427
Query: 410 LLQP 413
L P
Sbjct: 428 KLSP 431
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 62 PMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL---Q 118
P+ N+W + D NED +K D KLG E +DD W D+N +L +
Sbjct: 334 PVLVNNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGHRDDDNSSLGDWK 388
Query: 119 AKNATFPSGIKALADYVHSKGLKLGM 144
FP+G+ ADYVH +GLK G+
Sbjct: 389 VYKKKFPNGLGHFADYVHEQGLKFGL 414
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 62 PMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL---Q 118
P+ N+W + D NED +K D KLG E +DD W D+N +L +
Sbjct: 334 PVLVNNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGHRDDDNSSLGDWK 388
Query: 119 AKNATFPSGIKALADYVHSKGLKLGM 144
FP+G+ ADYVH +GLK G+
Sbjct: 389 VYKKKFPNGLGHFADYVHEQGLKFGL 414
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 59 KSPPMGWNSWNHFWCDINED-IVKAAADALVSSGLSKLGYEYVNIDDCW-GEQVRDEN-- 114
+ P+ N+W + D NE+ IV A A ++LG E V +DD W GE+ D
Sbjct: 327 RERPILINNWEATYFDFNEEKIVNIARTA------AELGIELVVLDDGWFGERDDDRRSL 380
Query: 115 GNLQAKNATFPSGIKALADYVHSKGLKLGMY 145
G+ P+G+ LA V+ GL+ G++
Sbjct: 381 GDWIVNRRKLPNGLDGLAKQVNELGLQFGLW 411
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCW-GEQVRDEN--G 115
+ P+ N+W + D NE+ + ++ ++LG E V +DD W GE+ D G
Sbjct: 327 RERPILINNWEATYFDFNEEKI-----VNIARTEAELGIELVVLDDGWFGERDDDRRSLG 381
Query: 116 NLQAKNATFPSGIKALADYVHSKGLKLGMY 145
+ P+G+ LA V+ GL+ G++
Sbjct: 382 DWIVNRRKLPNGLDGLAKQVNELGLQFGLW 411
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 62 PMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDEN---GNLQ 118
P+ N+W + D NE A +V+ +LG E +DD W D+ G+
Sbjct: 331 PVLINNWEATYFDFNE----AKLXTIVNQA-KRLGIEXFVLDDGWFGHRDDDTTSLGDWF 385
Query: 119 AKNATFPSGIKALADYVHSKGLKLGM 144
FP GI+ + VH +G K G+
Sbjct: 386 VDQRKFPDGIEHFSQAVHQQGXKFGL 411
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCW-GEQVRDEN--G 115
+ P+ N+W + D NE+ + ++ ++LG E V +DD W GE+ D G
Sbjct: 327 RERPILINNWEATYFDFNEEKI-----VNIARTEAELGIELVVLDDGWFGERDDDRRSLG 381
Query: 116 NLQAKNATFPSGIKALADYVHSKGLKLGMY 145
+ P+G+ LA V+ GL+ G++
Sbjct: 382 DWIVNRRKLPNGLDGLAKQVNELGLQFGLW 411
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCW-GEQVRDEN--G 115
+ P+ N+W + D NE+ + ++ ++LG E V +DD W GE+ D G
Sbjct: 327 RERPILINNWEATYFDFNEEKI-----VNIARTEAELGIELVVLDDGWFGERDDDRRSLG 381
Query: 116 NLQAKNATFPSGIKALADYVHSKGLKLGMY 145
+ P+G+ LA V+ GL+ G++
Sbjct: 382 DWIVNRRKLPNGLDGLAKQVNELGLQFGLW 411
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 62 PMGWNSWNHFWCDINED-IVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL--- 117
P+ NSW + D D IV A +A + LG + V +DD W + D+N +L
Sbjct: 330 PVLINSWEAAYFDFTGDTIVDLAKEA------ASLGIDMVVMDDGWFGKRNDDNSSLGDW 383
Query: 118 QAKNATFPSGIKALADYVHSKGLKLGM 144
Q + L VH +G+K G+
Sbjct: 384 QVNETKLGGSLAELITRVHEQGMKFGI 410
>pdb|3PDI|A Chain A, Precursor Bound Nifen
pdb|3PDI|C Chain C, Precursor Bound Nifen
pdb|3PDI|E Chain E, Precursor Bound Nifen
pdb|3PDI|G Chain G, Precursor Bound Nifen
Length = 483
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 301 DVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRTDVEIWTAPLSGYRFAVLIVNRDQWP 360
D +D ++ + ++ A + + + KVR +E W A L G R + W
Sbjct: 287 DTSQALRDFARLLDDPDLTARTEALIAREEAKVRAALEPWRARLEGKRVLLYTGGVKSW- 345
Query: 361 ANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYL 410
+V + L+D G+ + T + E K L G+ LD ++ L
Sbjct: 346 -SVVSALQDLGMKVVATGTKKSTEEDKARIRELMGDDVKMLDEGNARVLL 394
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 59 KSPPMGWNSWNHFWCDIN-EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL 117
K P GW SW H++ D+ E+ +K A +E IDD + + + G+
Sbjct: 193 KHTPTGWCSWYHYFLDLTWEETLKNLKLA------KNFPFEVFQIDDAYEKDI----GDW 242
Query: 118 QAKNATFPSGIKALADYVHSKGLKLGMYSS 147
FPS ++ A + G G++++
Sbjct: 243 LVTRGDFPS-VEEXAKVIAENGFIPGIWTA 271
>pdb|1ZTP|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|C Chain C, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|2Q4K|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
Length = 251
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 69 NHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGI 128
+H W I +V+ S +K G V + + D G L+A +A +GI
Sbjct: 140 DHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVIC--VYTDDFTDRLGVLEADSAIRAAGI 197
Query: 129 KALADYVHSKGLKLGMYSSAGYYTC 153
K L Y LG+Y + ++ C
Sbjct: 198 KCLLTYKPDVYTYLGIYRANRWHLC 222
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 82 AAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLK 141
A+A A+ +G K+ +Y +D EQ +E G L +A PS + L D + GL
Sbjct: 96 ASATAIEEAGGPKIPMKYGRVDVTEPEQCPEE-GRLP--DAGPPSPAQHLRDVFYRMGLN 152
Query: 142 -LGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA---------LWGVDYLKYDNCY 185
+ + +G +T + P G+ + + K W +LK+DN Y
Sbjct: 153 DKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSY 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,251,914
Number of Sequences: 62578
Number of extensions: 567049
Number of successful extensions: 1421
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 31
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)