Query 014963
Match_columns 415
No_of_seqs 148 out of 1675
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02692 alpha-galactosidase 100.0 8E-101 2E-105 764.2 40.8 398 14-415 13-412 (412)
2 PLN02229 alpha-galactosidase 100.0 1E-99 2E-104 759.5 38.3 365 49-414 51-420 (427)
3 PLN02808 alpha-galactosidase 100.0 5.1E-99 1E-103 750.1 36.9 363 51-414 22-386 (386)
4 KOG2366 Alpha-D-galactosidase 100.0 1.6E-83 3.5E-88 617.9 25.1 364 50-414 22-412 (414)
5 PLN02899 alpha-galactosidase 100.0 8.5E-76 1.9E-80 600.3 35.2 358 51-412 21-631 (633)
6 PLN03231 putative alpha-galact 100.0 1.2E-72 2.6E-77 555.2 24.1 266 61-328 1-352 (357)
7 PF02065 Melibiase: Melibiase; 100.0 9.7E-39 2.1E-43 321.6 17.4 301 57-374 37-393 (394)
8 PLN02219 probable galactinol-- 100.0 1.2E-31 2.7E-36 280.0 28.5 342 58-414 191-654 (775)
9 PLN02355 probable galactinol-- 100.0 3.8E-30 8.3E-35 269.4 28.6 340 59-414 196-662 (758)
10 PLN02711 Probable galactinol-- 100.0 1.1E-29 2.3E-34 265.6 26.5 335 63-414 215-684 (777)
11 PLN02684 Probable galactinol-- 100.0 4E-29 8.7E-34 261.0 28.5 336 63-414 204-654 (750)
12 PF05691 Raffinose_syn: Raffin 100.0 9E-28 2E-32 253.3 27.1 337 63-414 197-668 (747)
13 COG3345 GalA Alpha-galactosida 99.9 4.6E-26 1E-30 228.9 12.8 161 53-219 284-488 (687)
14 PLN02982 galactinol-raffinose 99.9 4.8E-24 1.1E-28 222.9 24.4 337 63-414 224-769 (865)
15 cd06592 GH31_glucosidase_KIAA1 99.7 1.6E-16 3.5E-21 156.4 21.4 169 59-245 12-227 (303)
16 PF10566 Glyco_hydro_97: Glyco 99.6 6.9E-15 1.5E-19 141.0 10.1 223 64-303 11-256 (273)
17 cd06593 GH31_xylosidase_YicI Y 99.4 4.3E-12 9.3E-17 125.3 18.3 163 74-250 20-235 (308)
18 cd06589 GH31 The enzymes of gl 99.3 1.6E-10 3.4E-15 111.8 19.8 167 58-251 3-198 (265)
19 cd06599 GH31_glycosidase_Aec37 99.2 1.4E-09 3.1E-14 107.8 17.7 165 74-250 25-249 (317)
20 PRK10658 putative alpha-glucos 99.1 3.7E-09 8.1E-14 114.1 18.9 181 55-250 257-494 (665)
21 cd06598 GH31_transferase_CtsZ 99.1 3.7E-09 8E-14 104.9 17.2 166 75-251 21-243 (317)
22 PF01055 Glyco_hydro_31: Glyco 99.1 1.3E-09 2.9E-14 112.7 14.5 161 75-251 40-265 (441)
23 cd06604 GH31_glucosidase_II_Ma 99.1 6.9E-09 1.5E-13 103.9 18.9 103 75-185 21-159 (339)
24 cd06595 GH31_xylosidase_XylS-l 99.1 7.9E-09 1.7E-13 101.4 18.7 163 75-249 22-222 (292)
25 cd06601 GH31_lyase_GLase GLase 99.0 1.6E-08 3.5E-13 100.7 19.3 103 75-185 21-133 (332)
26 cd06600 GH31_MGAM-like This fa 99.0 2.4E-08 5.1E-13 99.1 18.3 161 75-251 21-227 (317)
27 cd06591 GH31_xylosidase_XylS X 99.0 3.1E-08 6.7E-13 98.4 18.8 164 75-251 21-243 (319)
28 cd06602 GH31_MGAM_SI_GAA This 99.0 9.3E-08 2E-12 95.7 21.8 160 75-250 21-230 (339)
29 cd06597 GH31_transferase_CtsY 99.0 5.6E-08 1.2E-12 97.3 20.1 164 74-250 20-262 (340)
30 cd06594 GH31_glucosidase_YihQ 99.0 8.9E-08 1.9E-12 95.0 21.1 106 76-186 21-167 (317)
31 COG1501 Alpha-glucosidases, fa 98.8 8.6E-08 1.9E-12 104.8 15.5 180 54-250 254-492 (772)
32 cd06603 GH31_GANC_GANAB_alpha 98.8 7.1E-07 1.5E-11 89.4 20.8 103 75-185 21-162 (339)
33 PRK10426 alpha-glucosidase; Pr 98.7 1.2E-06 2.5E-11 94.6 18.7 124 54-185 197-363 (635)
34 PLN02763 hydrolase, hydrolyzin 98.5 3.5E-06 7.7E-11 93.5 18.9 120 54-185 176-336 (978)
35 KOG1065 Maltase glucoamylase a 97.8 0.00014 3E-09 78.7 11.0 117 59-184 291-447 (805)
36 TIGR02456 treS_nterm trehalose 97.1 0.42 9.2E-06 51.0 26.8 69 337-411 470-538 (539)
37 cd06596 GH31_CPE1046 CPE1046 i 96.9 0.032 6.9E-07 53.5 14.5 136 75-250 42-181 (261)
38 PRK10785 maltodextrin glucosid 96.2 1.4 3.1E-05 47.6 23.6 134 76-217 177-375 (598)
39 PRK09441 cytoplasmic alpha-amy 96.1 1.6 3.5E-05 45.8 22.9 53 158-213 208-262 (479)
40 PF14509 GH97_C: Glycosyl-hydr 96.1 0.049 1.1E-06 45.0 9.1 73 338-413 17-103 (103)
41 TIGR01515 branching_enzym alph 95.0 0.16 3.5E-06 55.1 10.8 104 75-184 153-297 (613)
42 PF08533 Glyco_hydro_42C: Beta 94.5 0.047 1E-06 40.1 3.5 49 345-410 9-57 (58)
43 PF01120 Alpha_L_fucos: Alpha- 93.5 0.89 1.9E-05 45.8 11.7 126 80-213 93-243 (346)
44 PF02806 Alpha-amylase_C: Alph 93.2 0.76 1.7E-05 36.7 8.8 70 338-412 12-94 (95)
45 PF13200 DUF4015: Putative gly 93.2 0.7 1.5E-05 45.8 10.1 100 76-186 11-148 (316)
46 TIGR02402 trehalose_TreZ malto 91.3 2 4.3E-05 46.0 11.5 125 75-208 108-271 (542)
47 PF10438 Cyc-maltodext_C: Cycl 90.9 1 2.3E-05 35.2 6.6 67 337-411 11-78 (78)
48 PRK12313 glycogen branching en 90.6 2.2 4.9E-05 46.5 11.4 104 75-184 167-311 (633)
49 smart00812 Alpha_L_fucos Alpha 90.4 3.4 7.4E-05 42.2 11.8 117 93-212 91-232 (384)
50 PRK14705 glycogen branching en 86.9 5.7 0.00012 46.4 11.6 101 75-184 762-906 (1224)
51 PRK05402 glycogen branching en 86.6 6.3 0.00014 43.8 11.6 103 76-184 263-406 (726)
52 PF02638 DUF187: Glycosyl hydr 86.6 3.7 8E-05 40.7 8.9 102 76-184 17-163 (311)
53 KOG1066 Glucosidase II catalyt 86.6 1.5 3.2E-05 47.4 6.3 94 45-148 338-434 (915)
54 PRK14706 glycogen branching en 85.5 8.1 0.00018 42.2 11.5 60 125-184 216-308 (639)
55 COG0296 GlgB 1,4-alpha-glucan 84.9 3 6.4E-05 45.2 7.6 102 76-186 163-307 (628)
56 TIGR02104 pulA_typeI pullulana 84.2 7.9 0.00017 42.0 10.8 83 127-212 230-346 (605)
57 TIGR02455 TreS_stutzeri trehal 83.8 5.7 0.00012 43.1 9.1 70 339-414 612-684 (688)
58 PLN02960 alpha-amylase 83.7 13 0.00029 41.8 12.2 104 76-185 414-559 (897)
59 PRK12568 glycogen branching en 82.2 15 0.00032 40.7 11.9 103 76-184 267-410 (730)
60 cd00598 GH18_chitinase-like Th 81.2 13 0.00028 33.8 9.6 89 126-214 49-147 (210)
61 PLN02361 alpha-amylase 80.8 13 0.00028 38.3 10.2 103 77-186 28-183 (401)
62 PF14488 DUF4434: Domain of un 80.6 3.5 7.6E-05 37.0 5.4 66 72-149 14-90 (166)
63 PRK10933 trehalose-6-phosphate 80.4 11 0.00024 40.4 10.0 62 76-144 31-99 (551)
64 PF11941 DUF3459: Domain of un 79.2 14 0.0003 28.8 7.9 54 341-409 36-89 (89)
65 cd02871 GH18_chitinase_D-like 78.5 12 0.00026 37.0 9.0 88 126-213 60-153 (312)
66 TIGR02403 trehalose_treC alpha 78.3 30 0.00065 37.1 12.5 62 76-144 25-93 (543)
67 TIGR02102 pullulan_Gpos pullul 77.7 30 0.00064 40.3 12.8 87 127-216 556-673 (1111)
68 PF13199 Glyco_hydro_66: Glyco 77.4 40 0.00087 36.2 12.9 218 58-301 100-392 (559)
69 PLN02447 1,4-alpha-glucan-bran 77.4 22 0.00047 39.7 11.2 103 76-184 248-392 (758)
70 COG1649 Uncharacterized protei 76.8 18 0.00038 37.4 9.6 106 74-183 60-207 (418)
71 PRK06233 hypothetical protein; 76.5 11 0.00023 38.5 8.1 107 71-185 158-279 (372)
72 PRK09722 allulose-6-phosphate 75.3 56 0.0012 30.9 12.1 77 128-213 97-197 (229)
73 TIGR01370 cysRS possible cyste 74.6 20 0.00043 35.7 9.1 129 59-212 39-210 (315)
74 KOG3111 D-ribulose-5-phosphate 73.8 9.7 0.00021 35.0 6.1 82 127-213 100-197 (224)
75 PLN02784 alpha-amylase 73.4 26 0.00057 39.4 10.5 101 77-185 520-676 (894)
76 cd06542 GH18_EndoS-like Endo-b 71.5 15 0.00034 34.8 7.5 80 127-206 52-141 (255)
77 PF01791 DeoC: DeoC/LacD famil 71.2 23 0.0005 33.3 8.5 83 128-213 114-200 (236)
78 cd03465 URO-D_like The URO-D _ 70.9 20 0.00043 35.3 8.4 88 93-213 178-270 (330)
79 cd02875 GH18_chitobiase Chitob 70.2 14 0.00031 37.3 7.2 82 129-213 67-156 (358)
80 COG0407 HemE Uroporphyrinogen- 70.1 13 0.00029 37.5 6.9 75 93-186 199-274 (352)
81 PF05913 DUF871: Bacterial pro 69.3 6 0.00013 40.0 4.2 86 76-186 12-100 (357)
82 PF06964 Alpha-L-AF_C: Alpha-L 68.4 24 0.00052 31.6 7.6 39 345-385 102-140 (177)
83 KOG3340 Alpha-L-fucosidase [Ca 68.0 10 0.00022 37.7 5.2 22 128-149 152-173 (454)
84 PLN02877 alpha-amylase/limit d 67.4 93 0.002 35.8 13.3 90 128-217 468-599 (970)
85 cd06545 GH18_3CO4_chitinase Th 66.9 23 0.00051 33.6 7.7 88 114-205 36-127 (253)
86 PLN00196 alpha-amylase; Provis 66.3 19 0.00041 37.4 7.3 113 64-185 32-206 (428)
87 TIGR02100 glgX_debranch glycog 65.8 48 0.001 36.7 10.7 78 127-204 246-365 (688)
88 PF09260 DUF1966: Domain of un 65.6 40 0.00088 27.1 7.6 68 340-409 11-79 (91)
89 PRK14510 putative bifunctional 65.3 45 0.00098 39.4 10.8 85 127-211 248-371 (1221)
90 cd00465 URO-D_CIMS_like The UR 64.9 13 0.00028 36.2 5.5 73 93-185 154-231 (306)
91 TIGR01463 mtaA_cmuA methyltran 64.6 34 0.00074 34.0 8.7 91 92-213 189-282 (340)
92 PRK09936 hypothetical protein; 64.4 27 0.00059 34.2 7.4 69 64-150 25-98 (296)
93 cd06522 GH25_AtlA-like AtlA is 62.6 50 0.0011 30.0 8.7 103 93-212 22-130 (192)
94 COG0036 Rpe Pentose-5-phosphat 61.8 27 0.00058 32.9 6.6 28 122-150 93-120 (220)
95 cd06543 GH18_PF-ChiA-like PF-C 60.6 80 0.0017 31.0 10.2 88 127-214 55-145 (294)
96 smart00632 Aamy_C Aamy_C domai 60.5 76 0.0017 24.5 8.2 53 348-407 17-74 (81)
97 smart00642 Aamy Alpha-amylase 60.5 32 0.00069 30.7 6.8 63 76-144 17-88 (166)
98 PRK08091 ribulose-phosphate 3- 59.7 88 0.0019 29.6 9.9 78 128-214 105-208 (228)
99 PF00834 Ribul_P_3_epim: Ribul 59.7 30 0.00065 32.0 6.7 28 122-150 89-116 (201)
100 PF14871 GHL6: Hypothetical gl 59.5 90 0.002 26.8 9.2 60 82-149 4-67 (132)
101 cd08577 PI-PLCc_GDPD_SF_unchar 59.5 21 0.00046 33.7 5.8 41 128-182 187-227 (228)
102 cd08607 GDPD_GDE5 Glycerophosp 59.3 18 0.00038 35.2 5.3 43 129-184 248-290 (290)
103 PRK08745 ribulose-phosphate 3- 59.1 86 0.0019 29.5 9.7 78 128-214 99-200 (223)
104 PLN03059 beta-galactosidase; P 59.0 1.8E+02 0.0039 33.0 13.4 113 8-142 2-114 (840)
105 PRK13397 3-deoxy-7-phosphohept 58.9 63 0.0014 31.1 8.8 102 76-212 27-128 (250)
106 PF07745 Glyco_hydro_53: Glyco 58.6 32 0.0007 34.5 7.1 89 81-183 27-133 (332)
107 PF00128 Alpha-amylase: Alpha 57.4 17 0.00036 34.7 4.8 126 77-212 3-195 (316)
108 PF07555 NAGidase: beta-N-acet 56.3 90 0.0019 30.9 9.7 119 71-203 7-142 (306)
109 COG2200 Rtn c-di-GMP phosphodi 55.9 35 0.00076 32.6 6.7 74 128-215 138-215 (256)
110 PRK14511 maltooligosyl trehalo 55.8 30 0.00065 39.2 6.9 70 70-144 12-87 (879)
111 KOG2672 Lipoate synthase [Coen 54.4 17 0.00038 35.3 4.2 58 157-215 135-196 (360)
112 TIGR03128 RuMP_HxlA 3-hexulose 53.9 1.2E+02 0.0026 27.6 9.7 43 128-183 91-134 (206)
113 PRK08508 biotin synthase; Prov 53.4 47 0.001 32.3 7.2 80 75-183 40-120 (279)
114 TIGR02401 trehalose_TreY malto 52.8 36 0.00077 38.3 6.8 70 70-144 8-83 (825)
115 PF03102 NeuB: NeuB family; I 52.4 47 0.001 31.7 6.8 42 127-184 57-98 (241)
116 cd06547 GH85_ENGase Endo-beta- 52.2 40 0.00087 33.9 6.6 77 129-205 49-134 (339)
117 COG1830 FbaB DhnA-type fructos 52.0 1.3E+02 0.0028 29.1 9.7 78 128-213 132-209 (265)
118 KOG0470 1,4-alpha-glucan branc 51.8 42 0.00091 36.9 6.9 94 91-184 263-404 (757)
119 TIGR02103 pullul_strch alpha-1 51.5 88 0.0019 35.7 9.7 87 128-217 406-528 (898)
120 PRK03705 glycogen debranching 51.2 88 0.0019 34.5 9.5 78 127-204 243-359 (658)
121 cd06546 GH18_CTS3_chitinase GH 51.0 46 0.001 31.9 6.6 83 128-213 61-148 (256)
122 cd02879 GH18_plant_chitinase_c 50.9 23 0.00049 34.8 4.6 77 127-203 52-136 (299)
123 PRK06852 aldolase; Validated 50.9 1.3E+02 0.0027 29.9 9.7 81 128-213 156-237 (304)
124 cd02803 OYE_like_FMN_family Ol 50.9 70 0.0015 31.5 8.2 104 74-184 130-250 (327)
125 cd08555 PI-PLCc_GDPD_SF Cataly 49.7 44 0.00095 29.9 6.0 42 128-183 138-179 (179)
126 cd08605 GDPD_GDE5_like_1_plant 49.4 26 0.00056 33.9 4.7 42 129-183 240-281 (282)
127 cd08575 GDPD_GDE4_like Glycero 48.5 29 0.00063 33.3 4.9 41 129-184 221-261 (264)
128 cd08583 PI-PLCc_GDPD_SF_unchar 48.3 35 0.00076 32.0 5.3 42 129-185 195-236 (237)
129 PRK05301 pyrroloquinoline quin 48.0 3E+02 0.0065 27.7 12.4 80 74-185 45-124 (378)
130 TIGR02109 PQQ_syn_pqqE coenzym 46.8 3.1E+02 0.0066 27.3 12.7 80 74-185 36-115 (358)
131 COG1856 Uncharacterized homolo 46.3 2E+02 0.0043 27.4 9.5 109 75-213 39-156 (275)
132 cd06416 GH25_Lys1-like Lys-1 i 46.1 15 0.00033 33.5 2.3 23 127-149 111-133 (196)
133 PRK13398 3-deoxy-7-phosphohept 45.9 1.2E+02 0.0026 29.3 8.7 102 76-212 39-140 (266)
134 cd08564 GDPD_GsGDE_like Glycer 45.8 36 0.00078 32.6 5.0 45 129-184 213-257 (265)
135 PF08924 DUF1906: Domain of un 45.8 43 0.00094 28.9 5.0 87 50-145 45-135 (136)
136 PRK12595 bifunctional 3-deoxy- 45.5 1.1E+02 0.0025 30.9 8.7 80 76-183 130-209 (360)
137 cd08580 GDPD_Rv2277c_like Glyc 45.4 54 0.0012 31.7 6.1 41 129-184 219-260 (263)
138 cd02874 GH18_CFLE_spore_hydrol 45.3 79 0.0017 30.9 7.5 77 128-205 47-132 (313)
139 PF11852 DUF3372: Domain of un 45.0 35 0.00075 30.8 4.4 57 348-411 105-166 (168)
140 COG1306 Uncharacterized conser 45.0 1.4E+02 0.0031 29.6 8.7 97 77-185 76-219 (400)
141 cd00019 AP2Ec AP endonuclease 44.7 2.6E+02 0.0056 26.6 10.9 124 78-215 10-145 (279)
142 cd06414 GH25_LytC-like The Lyt 44.0 22 0.00048 32.3 3.1 69 75-149 67-136 (191)
143 PLN03244 alpha-amylase; Provis 43.8 82 0.0018 35.3 7.7 60 125-184 440-533 (872)
144 cd02931 ER_like_FMN Enoate red 43.7 74 0.0016 32.4 7.2 106 74-182 139-272 (382)
145 COG0502 BioB Biotin synthase a 43.5 58 0.0013 32.7 6.1 91 59-181 61-160 (335)
146 COG3669 Alpha-L-fucosidase [Ca 43.5 41 0.0009 34.4 5.0 89 128-217 103-206 (430)
147 PF07488 Glyco_hydro_67M: Glyc 42.6 1.8E+02 0.0038 28.9 9.0 120 75-207 54-189 (328)
148 cd01948 EAL EAL domain. This d 42.3 55 0.0012 30.0 5.6 74 128-215 134-211 (240)
149 PF09863 DUF2090: Uncharacteri 41.9 51 0.0011 32.5 5.3 139 157-302 116-270 (311)
150 PRK06252 methylcobalamin:coenz 41.8 93 0.002 30.8 7.5 86 93-213 190-280 (339)
151 smart00052 EAL Putative diguan 41.3 74 0.0016 29.1 6.3 74 128-215 135-212 (241)
152 PRK13523 NADPH dehydrogenase N 40.7 86 0.0019 31.4 7.0 103 74-183 131-248 (337)
153 COG1242 Predicted Fe-S oxidore 40.4 1.5E+02 0.0033 29.1 8.1 121 77-213 128-264 (312)
154 PRK08227 autoinducer 2 aldolas 40.2 2.2E+02 0.0049 27.5 9.4 71 128-213 129-199 (264)
155 cd02933 OYE_like_FMN Old yello 39.4 1.4E+02 0.0031 29.9 8.3 105 74-182 141-261 (338)
156 cd06548 GH18_chitinase The GH1 39.0 58 0.0013 32.1 5.4 92 123-215 67-182 (322)
157 COG3867 Arabinogalactan endo-1 39.0 1.7E+02 0.0037 29.0 8.2 95 81-184 66-180 (403)
158 cd03310 CIMS_like CIMS - Cobal 38.9 1E+02 0.0023 30.1 7.2 73 92-187 160-233 (321)
159 PLN02801 beta-amylase 38.9 53 0.0012 34.6 5.2 58 75-143 34-91 (517)
160 PLN02803 beta-amylase 38.3 53 0.0011 34.9 5.1 59 75-144 104-162 (548)
161 cd06416 GH25_Lys1-like Lys-1 i 38.2 1.9E+02 0.004 26.2 8.3 102 93-211 19-128 (196)
162 PRK13210 putative L-xylulose 5 38.2 1.8E+02 0.0038 27.7 8.6 55 127-181 53-113 (284)
163 cd03311 CIMS_C_terminal_like C 38.0 1E+02 0.0022 30.5 7.0 101 77-186 147-252 (332)
164 PRK09454 ugpQ cytoplasmic glyc 37.6 81 0.0018 29.8 6.0 42 129-185 199-240 (249)
165 cd08601 GDPD_SaGlpQ_like Glyce 36.9 82 0.0018 29.8 5.9 41 129-184 208-248 (256)
166 cd08562 GDPD_EcUgpQ_like Glyce 36.6 83 0.0018 29.0 5.8 40 129-183 189-228 (229)
167 PRK06520 5-methyltetrahydropte 36.6 1E+02 0.0023 31.2 6.9 113 70-186 156-279 (368)
168 cd08582 GDPD_like_2 Glyceropho 36.5 81 0.0018 29.3 5.8 41 129-184 191-231 (233)
169 PLN00197 beta-amylase; Provisi 36.3 60 0.0013 34.6 5.1 59 75-144 124-182 (573)
170 cd08579 GDPD_memb_like Glycero 36.3 77 0.0017 29.2 5.5 40 129-183 180-219 (220)
171 COG3325 ChiA Chitinase [Carboh 36.3 51 0.0011 34.0 4.5 43 161-203 153-204 (441)
172 PRK12677 xylose isomerase; Pro 35.7 28 0.00061 35.6 2.6 61 79-144 115-177 (384)
173 cd07944 DRE_TIM_HOA_like 4-hyd 35.7 4.1E+02 0.0088 25.5 12.7 65 73-149 15-81 (266)
174 cd08563 GDPD_TtGDE_like Glycer 35.6 82 0.0018 29.2 5.7 40 129-183 190-229 (230)
175 TIGR01361 DAHP_synth_Bsub phos 35.6 1E+02 0.0022 29.7 6.3 102 76-212 37-138 (260)
176 cd08556 GDPD Glycerophosphodie 35.5 86 0.0019 27.6 5.6 40 129-183 150-189 (189)
177 PRK09121 5-methyltetrahydropte 35.4 65 0.0014 32.3 5.1 109 68-186 140-255 (339)
178 cd08612 GDPD_GDE4 Glycerophosp 35.2 86 0.0019 30.7 5.9 41 129-184 251-291 (300)
179 COG3534 AbfA Alpha-L-arabinofu 35.2 1.6E+02 0.0036 30.7 7.9 65 346-413 416-500 (501)
180 PRK14057 epimerase; Provisiona 35.1 3.5E+02 0.0076 26.1 9.8 77 128-213 112-221 (254)
181 TIGR01464 hemE uroporphyrinoge 34.6 1.6E+02 0.0034 29.3 7.8 86 93-213 190-281 (338)
182 cd08572 GDPD_GDE5_like Glycero 34.4 77 0.0017 31.0 5.4 42 129-183 251-292 (293)
183 COG2342 Predicted extracellula 34.4 2.3E+02 0.005 27.7 8.3 80 93-185 40-149 (300)
184 cd08606 GDPD_YPL110cp_fungi Gl 34.4 73 0.0016 30.8 5.2 43 129-184 235-277 (286)
185 PF00563 EAL: EAL domain; Int 34.2 1.6E+02 0.0035 26.7 7.3 72 128-214 136-211 (236)
186 COG0731 Fe-S oxidoreductases [ 34.1 2E+02 0.0043 28.4 8.1 103 56-186 24-142 (296)
187 PLN02705 beta-amylase 34.0 66 0.0014 34.8 5.0 59 75-144 265-323 (681)
188 cd08581 GDPD_like_1 Glyceropho 34.0 80 0.0017 29.6 5.3 39 130-183 190-228 (229)
189 PRK14507 putative bifunctional 33.9 95 0.0021 37.9 6.8 74 70-148 750-829 (1693)
190 PLN02161 beta-amylase 33.9 68 0.0015 33.9 5.0 59 75-144 114-172 (531)
191 PRK06769 hypothetical protein; 33.8 56 0.0012 29.1 4.0 24 123-147 29-52 (173)
192 cd02932 OYE_YqiM_FMN Old yello 33.3 3.5E+02 0.0076 26.8 10.0 84 52-144 11-95 (336)
193 TIGR01294 P_lamban phospholamb 32.8 38 0.00083 23.4 2.0 13 12-24 39-51 (52)
194 TIGR03569 NeuB_NnaB N-acetylne 32.8 2.9E+02 0.0062 27.7 9.1 43 126-184 76-118 (329)
195 cd06414 GH25_LytC-like The Lyt 32.7 2.2E+02 0.0048 25.7 7.9 106 93-212 19-133 (191)
196 PRK04326 methionine synthase; 32.6 1.9E+02 0.004 28.6 7.9 71 91-185 169-240 (330)
197 cd08576 GDPD_like_SMaseD_PLD G 32.4 2.3E+02 0.005 27.5 8.1 45 125-184 190-239 (265)
198 PF00704 Glyco_hydro_18: Glyco 32.2 81 0.0017 30.9 5.2 43 161-203 101-146 (343)
199 cd02932 OYE_YqiM_FMN Old yello 31.8 1.4E+02 0.003 29.7 6.8 103 73-182 142-261 (336)
200 cd08560 GDPD_EcGlpQ_like_1 Gly 31.7 1.3E+02 0.0029 30.4 6.7 58 128-185 280-348 (356)
201 COG2894 MinD Septum formation 31.6 47 0.001 31.5 3.1 24 75-103 97-120 (272)
202 PF11790 Glyco_hydro_cc: Glyco 31.5 2.9E+02 0.0063 26.0 8.7 131 59-213 40-172 (239)
203 TIGR01370 cysRS possible cyste 31.5 5.1E+02 0.011 25.8 10.6 116 79-207 148-298 (315)
204 cd04734 OYE_like_3_FMN Old yel 31.2 3.6E+02 0.0079 26.9 9.8 85 52-145 11-96 (343)
205 smart00636 Glyco_18 Glycosyl h 31.1 1E+02 0.0022 30.3 5.8 87 128-215 54-155 (334)
206 cd08567 GDPD_SpGDE_like Glycer 31.0 1E+02 0.0023 29.0 5.6 41 129-184 221-261 (263)
207 cd08604 GDPD_SHV3_repeat_2 Gly 30.9 1.2E+02 0.0026 29.8 6.1 52 130-185 241-295 (300)
208 TIGR03315 Se_ygfK putative sel 30.9 48 0.001 38.3 3.6 52 77-147 249-303 (1012)
209 PRK14581 hmsF outer membrane N 30.6 3.6E+02 0.0079 29.8 10.2 67 74-147 68-140 (672)
210 cd03309 CmuC_like CmuC_like. P 30.6 1.8E+02 0.0039 28.9 7.4 89 96-213 169-262 (321)
211 cd08561 GDPD_cytoplasmic_ScUgp 30.5 1.2E+02 0.0025 28.6 5.8 41 129-184 202-242 (249)
212 PRK12313 glycogen branching en 30.4 2E+02 0.0043 31.5 8.2 70 338-414 540-630 (633)
213 PRK00115 hemE uroporphyrinogen 30.3 1.9E+02 0.0041 28.8 7.6 86 93-213 196-287 (346)
214 PRK02412 aroD 3-dehydroquinate 30.2 4.5E+02 0.0097 25.0 9.8 84 74-186 91-176 (253)
215 PRK15308 putative fimbrial pro 30.2 2.3E+02 0.005 26.9 7.6 63 348-414 34-99 (234)
216 cd08574 GDPD_GDE_2_3_6 Glycero 30.2 1.1E+02 0.0023 29.2 5.5 39 129-182 213-251 (252)
217 PRK12858 tagatose 1,6-diphosph 30.1 4.6E+02 0.01 26.3 10.2 85 128-212 145-247 (340)
218 TIGR02668 moaA_archaeal probab 30.0 3.6E+02 0.0078 26.1 9.3 77 74-183 39-116 (302)
219 cd08609 GDPD_GDE3 Glycerophosp 29.9 76 0.0016 31.5 4.5 41 129-184 235-275 (315)
220 cd07941 DRE_TIM_LeuA3 Desulfob 29.7 4.1E+02 0.0089 25.5 9.6 76 128-209 121-196 (273)
221 PRK09505 malS alpha-amylase; R 29.7 1.5E+02 0.0033 32.8 7.2 64 76-144 228-310 (683)
222 cd02930 DCR_FMN 2,4-dienoyl-Co 29.3 1.6E+02 0.0035 29.5 6.9 101 74-182 126-244 (353)
223 PRK08195 4-hyroxy-2-oxovalerat 29.2 5.9E+02 0.013 25.4 12.9 116 72-217 19-139 (337)
224 PLN02905 beta-amylase 29.2 90 0.0019 33.9 5.0 59 75-144 283-341 (702)
225 PTZ00170 D-ribulose-5-phosphat 28.7 3.8E+02 0.0083 25.0 8.9 105 75-214 16-122 (228)
226 PF07172 GRP: Glycine rich pro 28.6 47 0.001 27.0 2.3 13 13-25 9-21 (95)
227 PRK09250 fructose-bisphosphate 28.3 3.6E+02 0.0078 27.3 8.9 57 128-186 181-241 (348)
228 cd02429 PTH2_like Peptidyl-tRN 28.1 70 0.0015 27.0 3.3 43 127-169 67-111 (116)
229 cd02877 GH18_hevamine_XipI_cla 28.1 1.7E+02 0.0036 28.6 6.5 83 127-213 60-160 (280)
230 cd08570 GDPD_YPL206cp_fungi Gl 28.0 1.4E+02 0.0031 27.8 5.9 40 129-183 194-233 (234)
231 PRK06256 biotin synthase; Vali 27.9 1.3E+02 0.0028 29.7 5.9 79 75-182 91-169 (336)
232 TIGR01668 YqeG_hyp_ppase HAD s 27.9 89 0.0019 27.7 4.3 43 95-147 23-67 (170)
233 cd00945 Aldolase_Class_I Class 27.8 3.5E+02 0.0076 23.7 8.3 85 77-184 64-151 (201)
234 cd06523 GH25_PlyB-like PlyB is 27.7 3.5E+02 0.0075 24.1 8.1 101 94-212 20-122 (177)
235 PF04272 Phospholamban: Phosph 27.6 54 0.0012 22.7 2.1 13 12-24 39-51 (52)
236 COG0541 Ffh Signal recognition 27.6 1.6E+02 0.0035 30.7 6.4 32 128-165 117-148 (451)
237 PRK09853 putative selenate red 27.4 57 0.0012 37.7 3.5 55 77-147 251-305 (1019)
238 cd02803 OYE_like_FMN_family Ol 27.3 2.2E+02 0.0048 27.9 7.4 84 52-143 10-94 (327)
239 PRK01060 endonuclease IV; Prov 27.3 5.4E+02 0.012 24.3 10.4 89 80-182 14-109 (281)
240 PRK15108 biotin synthase; Prov 27.2 2.2E+02 0.0047 28.6 7.3 80 75-184 76-155 (345)
241 cd08610 GDPD_GDE6 Glycerophosp 27.2 1.3E+02 0.0029 29.8 5.7 42 129-185 235-276 (316)
242 PRK08673 3-deoxy-7-phosphohept 27.1 4.8E+02 0.011 26.2 9.7 80 76-183 105-184 (335)
243 PRK14582 pgaB outer membrane N 27.0 5.3E+02 0.012 28.6 10.7 108 12-146 10-139 (671)
244 PRK13361 molybdenum cofactor b 26.9 6.2E+02 0.013 24.9 13.2 77 74-183 44-122 (329)
245 PRK12677 xylose isomerase; Pro 26.6 6.4E+02 0.014 25.7 10.7 106 63-181 15-133 (384)
246 PF01301 Glyco_hydro_35: Glyco 26.3 4.3E+02 0.0094 26.1 9.2 67 73-148 19-85 (319)
247 cd00599 GH25_muramidase Endo-N 26.3 2.8E+02 0.0061 24.6 7.4 101 93-212 18-125 (186)
248 PF01373 Glyco_hydro_14: Glyco 26.2 64 0.0014 33.2 3.3 55 79-144 17-71 (402)
249 TIGR03217 4OH_2_O_val_ald 4-hy 26.2 6.7E+02 0.014 25.0 13.6 87 72-182 18-107 (333)
250 COG3589 Uncharacterized conser 26.0 1.2E+02 0.0026 30.4 5.0 87 78-186 16-102 (360)
251 PF13204 DUF4038: Protein of u 25.9 42 0.00092 32.8 1.9 146 62-215 15-188 (289)
252 TIGR03356 BGL beta-galactosida 25.9 1.5E+02 0.0032 30.7 6.1 58 160-217 52-118 (427)
253 KOG2386 mRNA capping enzyme, g 25.7 2.3E+02 0.005 29.1 7.1 79 128-217 50-134 (393)
254 cd00717 URO-D Uroporphyrinogen 25.5 2.7E+02 0.0058 27.5 7.6 86 93-213 187-278 (335)
255 PF04273 DUF442: Putative phos 25.3 3.9E+02 0.0085 22.1 7.3 76 133-217 21-96 (110)
256 PRK00957 methionine synthase; 25.1 1.4E+02 0.0029 29.3 5.4 90 71-185 129-222 (305)
257 PRK09856 fructoselysine 3-epim 25.0 62 0.0014 30.8 2.9 58 79-145 91-148 (275)
258 cd04734 OYE_like_3_FMN Old yel 25.0 2.1E+02 0.0046 28.6 6.8 101 74-181 130-248 (343)
259 PRK08883 ribulose-phosphate 3- 24.8 2.3E+02 0.005 26.5 6.6 23 128-150 95-117 (220)
260 PTZ00170 D-ribulose-5-phosphat 24.6 1.8E+02 0.0039 27.3 5.9 52 161-212 18-69 (228)
261 PRK10558 alpha-dehydro-beta-de 24.5 3.2E+02 0.0069 26.2 7.6 49 121-186 3-51 (256)
262 PF11871 DUF3391: Domain of un 24.4 54 0.0012 27.4 2.1 45 140-185 10-58 (128)
263 TIGR03551 F420_cofH 7,8-dideme 24.4 1.4E+02 0.003 29.8 5.3 85 75-180 70-156 (343)
264 smart00813 Alpha-L-AF_C Alpha- 24.4 3.2E+02 0.007 24.6 7.4 26 346-371 114-140 (189)
265 PF01183 Glyco_hydro_25: Glyco 24.4 78 0.0017 28.3 3.2 85 49-148 42-129 (181)
266 PF01208 URO-D: Uroporphyrinog 24.1 93 0.002 30.7 4.0 86 93-213 192-283 (343)
267 cd07945 DRE_TIM_CMS Leptospira 24.0 6.5E+02 0.014 24.4 9.8 76 128-209 117-192 (280)
268 PF00150 Cellulase: Cellulase 24.0 4.3E+02 0.0094 24.6 8.6 121 79-209 22-166 (281)
269 PRK10605 N-ethylmaleimide redu 23.9 2.3E+02 0.0051 28.6 6.9 106 74-183 148-270 (362)
270 cd02810 DHOD_DHPD_FMN Dihydroo 23.8 4.5E+02 0.0097 25.2 8.7 18 165-182 179-196 (289)
271 PRK13396 3-deoxy-7-phosphohept 23.7 6.2E+02 0.013 25.6 9.7 81 76-184 113-193 (352)
272 PRK05402 glycogen branching en 23.7 3.2E+02 0.0069 30.5 8.4 68 338-412 636-724 (726)
273 cd03307 Mta_CmuA_like MtaA_Cmu 23.6 3.3E+02 0.0072 26.7 7.9 86 93-213 181-271 (326)
274 TIGR01334 modD putative molybd 23.6 2.7E+02 0.0058 27.2 6.9 61 94-185 206-266 (277)
275 cd02878 GH18_zymocin_alpha Zym 23.6 1.4E+02 0.0029 30.0 5.1 45 162-206 94-148 (345)
276 PF13344 Hydrolase_6: Haloacid 23.3 2.8E+02 0.0061 22.3 6.1 52 114-177 6-57 (101)
277 cd08573 GDPD_GDE1 Glycerophosp 23.3 1.7E+02 0.0038 27.8 5.6 39 129-183 218-257 (258)
278 PLN02161 beta-amylase 23.2 2.2E+02 0.0048 30.2 6.5 46 164-209 119-170 (531)
279 cd03174 DRE_TIM_metallolyase D 22.9 5.7E+02 0.012 23.8 9.1 79 127-212 116-196 (265)
280 PRK08745 ribulose-phosphate 3- 22.9 3.6E+02 0.0078 25.3 7.5 103 75-213 13-117 (223)
281 TIGR01235 pyruv_carbox pyruvat 22.8 1.3E+03 0.028 27.4 13.4 85 73-181 620-708 (1143)
282 TIGR00433 bioB biotin syntheta 22.5 2.3E+02 0.0049 27.3 6.4 20 164-183 189-208 (296)
283 PLN02803 beta-amylase 22.2 2.2E+02 0.0048 30.4 6.3 47 163-209 108-160 (548)
284 cd04735 OYE_like_4_FMN Old yel 22.1 2.8E+02 0.0061 27.8 7.0 103 73-183 132-256 (353)
285 cd02872 GH18_chitolectin_chito 22.0 1.1E+02 0.0024 30.6 4.1 89 126-215 56-160 (362)
286 cd00502 DHQase_I Type I 3-dehy 21.9 6.3E+02 0.014 23.3 9.7 82 74-186 72-154 (225)
287 TIGR02884 spore_pdaA delta-lac 21.8 2.4E+02 0.0051 26.3 6.1 18 130-147 143-160 (224)
288 PLN00197 beta-amylase; Provisi 21.8 2.4E+02 0.0052 30.2 6.5 46 164-209 129-180 (573)
289 cd08608 GDPD_GDE2 Glycerophosp 21.7 2.1E+02 0.0046 28.9 6.0 42 129-185 213-254 (351)
290 TIGR03586 PseI pseudaminic aci 21.7 4.6E+02 0.01 26.2 8.4 41 128-184 79-119 (327)
291 cd06418 GH25_BacA-like BacA is 21.5 1.4E+02 0.003 27.9 4.3 59 81-148 92-150 (212)
292 PRK06256 biotin synthase; Vali 21.4 3.9E+02 0.0085 26.3 7.9 80 128-214 189-276 (336)
293 COG0854 PdxJ Pyridoxal phospha 21.4 2E+02 0.0044 27.2 5.3 42 127-183 112-153 (243)
294 PLN02801 beta-amylase 21.3 2.5E+02 0.0055 29.8 6.5 46 164-209 39-90 (517)
295 TIGR02455 TreS_stutzeri trehal 21.3 3.7E+02 0.0079 29.7 7.9 57 128-184 201-296 (688)
296 PF02055 Glyco_hydro_30: O-Gly 21.3 3.1E+02 0.0067 29.1 7.4 51 337-407 441-491 (496)
297 PLN02705 beta-amylase 21.2 2.5E+02 0.0054 30.6 6.5 46 164-209 270-321 (681)
298 COG0678 AHP1 Peroxiredoxin [Po 21.2 1.8E+02 0.0039 25.9 4.6 44 134-181 32-78 (165)
299 PLN02389 biotin synthase 21.1 4.7E+02 0.01 26.7 8.5 82 75-184 116-197 (379)
300 TIGR01212 radical SAM protein, 21.1 2.9E+02 0.0064 27.0 6.8 50 128-184 165-215 (302)
301 PRK09997 hydroxypyruvate isome 21.1 6.9E+02 0.015 23.4 10.5 102 80-204 17-128 (258)
302 PRK09856 fructoselysine 3-epim 20.8 7E+02 0.015 23.4 12.6 104 62-184 2-112 (275)
303 cd02873 GH18_IDGF The IDGF's ( 20.8 1.3E+02 0.0029 30.9 4.5 25 162-186 108-132 (413)
304 TIGR02873 spore_ylxY probable 20.8 2.7E+02 0.0058 26.9 6.3 22 78-102 98-119 (268)
305 PRK13561 putative diguanylate 20.7 2.1E+02 0.0045 31.1 6.2 76 128-214 536-612 (651)
306 PRK09852 cryptic 6-phospho-bet 20.6 1.8E+02 0.004 30.6 5.5 58 160-217 69-136 (474)
307 PLN02746 hydroxymethylglutaryl 20.6 8.3E+02 0.018 24.6 10.0 84 128-215 164-249 (347)
308 PF01261 AP_endonuc_2: Xylose 20.6 64 0.0014 28.7 1.9 66 77-149 70-135 (213)
309 PLN02905 beta-amylase 20.5 2.5E+02 0.0054 30.7 6.4 46 164-209 288-339 (702)
310 PF03009 GDPD: Glycerophosphor 20.5 1.7E+02 0.0037 26.7 4.9 42 129-183 212-253 (256)
311 cd06522 GH25_AtlA-like AtlA is 20.4 1E+02 0.0022 28.0 3.2 22 127-148 110-132 (192)
312 PHA02119 hypothetical protein 20.3 96 0.0021 23.6 2.4 26 117-142 44-70 (87)
313 cd02930 DCR_FMN 2,4-dienoyl-Co 20.2 7E+02 0.015 24.9 9.5 85 51-146 10-97 (353)
314 TIGR02495 NrdG2 anaerobic ribo 20.1 6.1E+02 0.013 22.4 9.6 74 124-212 76-159 (191)
315 PF02449 Glyco_hydro_42: Beta- 20.0 70 0.0015 32.3 2.2 61 75-147 7-68 (374)
No 1
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=8.4e-101 Score=764.20 Aligned_cols=398 Identities=73% Similarity=1.277 Sum_probs=366.6
Q ss_pred HHHHHHHHHHhhccccccccCccccccccccchhhhhhhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCc
Q 014963 14 CVLLSCLMVMAAASSRATIMGKVSNTKFHHHSERLRRNLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLS 93 (415)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~ 93 (415)
.++|+.+||+.+.-+. -++.+-..-..+++.+..+++|+++++||||||||+.|+|+|||+.++++||++++.||+
T Consensus 13 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~ 88 (412)
T PLN02692 13 LLILISVMVMVMVESS----RSVNNKEFDDDSEILRRNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLS 88 (412)
T ss_pred HHHHHHHHHhhccccc----cccccccccchhhhhhhhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccch
Confidence 3444555555433221 223333344455788899999999999999999999999999999999999999999999
Q ss_pred ccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHH
Q 014963 94 KLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFAL 173 (415)
Q Consensus 94 ~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~ 173 (415)
++||+||+|||||+...||+.|+|++|++|||+|||+|+||||+||||||||.++|..+|....||+++|++.++++|++
T Consensus 89 ~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~ 168 (412)
T PLN02692 89 KLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFAS 168 (412)
T ss_pred hcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHh
Confidence 99999999999999998999999999999999999999999999999999999999999988779999999999999999
Q ss_pred cCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHHhh
Q 014963 174 WGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADANE 253 (415)
Q Consensus 174 wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~~~ 253 (415)
|||||||+|+|+.....+.++|..|.+||+++||+|+|++|+||...|+.|..+++|+||++.|+.+.|.++.++++.+.
T Consensus 169 WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~ 248 (412)
T PLN02692 169 WGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNE 248 (412)
T ss_pred cCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHH
Confidence 99999999999876666678999999999999999999999999888999999999999999999999999999999888
Q ss_pred hhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHcCccccccCCCCCChhhhhhccChhhhhhccCCCccccEEe
Q 014963 254 VYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKV 333 (415)
Q Consensus 254 ~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~~a~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~~~~~~ 333 (415)
.++.+++|++|||||||+||+.++|.+|+|+||++|||++|||++|+||++++++.+++|+|+|+||||||++|++++++
T Consensus 249 ~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v 328 (412)
T PLN02692 249 VYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKV 328 (412)
T ss_pred HHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec--CceEEEEEcCCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEE
Q 014963 334 RT--DVEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLL 411 (415)
Q Consensus 334 ~~--d~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l 411 (415)
.. +.++|.+++++|+++|++||+++.++++++++++||+.....++|||||++++++..+++.++++|+||||+||||
T Consensus 329 ~~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl 408 (412)
T PLN02692 329 RMEGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYIL 408 (412)
T ss_pred EecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCccCccccceEEEEECCceEEEEEE
Confidence 77 6899999999999999999999999999999999999876679999999999984357889999999999999999
Q ss_pred EeCC
Q 014963 412 QPIS 415 (415)
Q Consensus 412 ~p~~ 415 (415)
+|++
T Consensus 409 ~~~~ 412 (412)
T PLN02692 409 KPIS 412 (412)
T ss_pred ecCC
Confidence 9975
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=1e-99 Score=759.47 Aligned_cols=365 Identities=59% Similarity=1.060 Sum_probs=348.6
Q ss_pred hhhhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcH
Q 014963 49 RRNLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGI 128 (415)
Q Consensus 49 ~~~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl 128 (415)
....++|+++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||+.|+|++|++|||+||
T Consensus 51 ~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~ 130 (427)
T PLN02229 51 GRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGI 130 (427)
T ss_pred hhhhccCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcH
Confidence 44567899999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRP 208 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~ 208 (415)
|+|+||+|+||||||||.++|..+|.++ ||+++|++.++++|++|||||||+|+|+.......++|..|.+||+++||+
T Consensus 131 k~ladyiH~~GlKfGIy~d~G~~TC~~~-pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 209 (427)
T PLN02229 131 KLLADYVHSKGLKLGIYSDAGVFTCQVR-PGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRS 209 (427)
T ss_pred HHHHHHHHHCCCceEEeccCCCcccCCC-CCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999877 999999999999999999999999999887667788999999999999999
Q ss_pred EEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHH
Q 014963 209 IYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSL 288 (415)
Q Consensus 209 i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~ 288 (415)
|+|++|+||...|+.|..+++|+||++.|+.+.|.++.++++.+..|+.+++|++|||||||++|+.++|.+|+|+||+|
T Consensus 210 I~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsL 289 (427)
T PLN02229 210 IFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSI 289 (427)
T ss_pred cEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHH
Confidence 99999999988888898899999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHcCccccccCCCCCChhhhhhccChhhhhhccCCCccccEEeec-----CceEEEEEcCCCcEEEEEEecCCCCeeE
Q 014963 289 WAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRT-----DVEIWTAPLSGYRFAVLIVNRDQWPANV 363 (415)
Q Consensus 289 ~a~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~~~~~~~~-----d~~vw~~~l~~g~~~Va~fN~~~~~~~~ 363 (415)
|||++|||++|+||++|+++.+++|+|+|+||||||++|++++++.. +.++|.+++++|+++|++||++++++++
T Consensus 290 Wai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v 369 (427)
T PLN02229 290 WALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSEPATI 369 (427)
T ss_pred HHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCCCEEE
Confidence 99999999999999999999999999999999999999999999976 2799999999999999999999999999
Q ss_pred EeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 364 TTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 364 ~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
+++|+++||.....|+|||||++++++..++++|+++|+||||+||||+|+
T Consensus 370 ~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~~~~v~~Hg~~l~rl~~~ 420 (427)
T PLN02229 370 TASWDVIGLESSISVSVRDLWKHKDLSENVVGSFGAQVDAHDCHMYIFTPQ 420 (427)
T ss_pred EEEHHHcCCCCCCceEEEECCCCCccCccccceEEEEECCCeEEEEEEecc
Confidence 999999999876679999999999984357889999999999999999985
No 3
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=5.1e-99 Score=750.11 Aligned_cols=363 Identities=63% Similarity=1.155 Sum_probs=349.2
Q ss_pred hhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHH
Q 014963 51 NLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 51 ~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~ 130 (415)
.+++|+++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||+.|+|+||++|||+|||+
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~ 101 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKA 101 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHH
Confidence 46689999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEE
Q 014963 131 LADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIY 210 (415)
Q Consensus 131 l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~ 210 (415)
|+||||++|||||||.++|..+|...+||+++|++.++++|++|||||||+|+|+.......++|..|.+||+++||+|+
T Consensus 102 lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~ 181 (386)
T PLN02808 102 LADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIF 181 (386)
T ss_pred HHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999999999887899999999999999999999999999988766677899999999999999999
Q ss_pred EEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHHHH
Q 014963 211 YSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWA 290 (415)
Q Consensus 211 ~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~~a 290 (415)
|++|+||...|..|..+++|+||++.|+.+.|.++.++++.+..++.+++|++|||||||+||+.++|.+|+|+||+|||
T Consensus 182 ~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsLWa 261 (386)
T PLN02808 182 FSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWA 261 (386)
T ss_pred EEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHH
Confidence 99999998888899989999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHcCccccccCCCCCChhhhhhccChhhhhhccCCCccccEEeec--CceEEEEEcCCCcEEEEEEecCCCCeeEEeecc
Q 014963 291 ISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRT--DVEIWTAPLSGYRFAVLIVNRDQWPANVTTHLE 368 (415)
Q Consensus 291 ~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~~~~~~~~--d~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~ 368 (415)
|++|||++|+||++|+++.+++|+|+|+||||||++|.+++++.. +.++|++++++|+++|++||+++.+++++++|+
T Consensus 262 m~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~ 341 (386)
T PLN02808 262 LAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWS 341 (386)
T ss_pred HHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHH
Confidence 999999999999999999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 369 DFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 369 ~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
+|||.....|+|||||+|+++ +.++++++++|+||+|+||||+|.
T Consensus 342 ~lgl~~~~~~~vrDlWs~~~~-g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 342 DIGLNSSAVVNARDLWAHSTQ-SSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred HhCCCCCCceEEEECCCCCcc-CcccceEEEEECCceEEEEEEeCC
Confidence 999986667999999999998 788899999999999999999984
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-83 Score=617.88 Aligned_cols=364 Identities=55% Similarity=0.976 Sum_probs=342.5
Q ss_pred hhhccCCCCCCCceEEecccccCCCCC----------HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeee
Q 014963 50 RNLLANGLGKSPPMGWNSWNHFWCDIN----------EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA 119 (415)
Q Consensus 50 ~~~~~~~~~~~pp~GWnsW~~~~~~i~----------e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~ 119 (415)
++.++||++++|||||+||+.|.|+++ |+.+++.||+|++.|+++.||+||+|||||-+..||..|++++
T Consensus 22 ~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva 101 (414)
T KOG2366|consen 22 RMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVA 101 (414)
T ss_pred heeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCcccccc
Confidence 478999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHH
Q 014963 120 KNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMT 199 (415)
Q Consensus 120 ~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~ 199 (415)
++++||+|++.+++|+|++|+|||||.+.|.++|.+. ||++.|++.++++|++|||||+|+|.|+.......++|..|.
T Consensus 102 ~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~-PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms 180 (414)
T KOG2366|consen 102 DPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGY-PGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMS 180 (414)
T ss_pred ChhhcccchhhhhhchhhcCCceeeeeccCchhhccC-CcccchhhhhhhhhHhhCCcEEeccccccccccccccchhHH
Confidence 9999999999999999999999999999999999555 999999999999999999999999999998888899999999
Q ss_pred HHHHHcCCCEEEEecCCCCCCcCcc-------cccccceEeecCCCCCchhhHHHHHH----HhhhhhhccCCCCCCCCC
Q 014963 200 RALMKAGRPIYYSLCEWGDMHPALW-------GFQVGNSWRTTGDITDTFESVMSRAD----ANEVYADYARPGGWNDPD 268 (415)
Q Consensus 200 ~al~~~g~~i~~~~c~~g~~~p~~~-------~~~~~~~~R~s~D~~~~w~~~~~~~~----~~~~~~~~~~~~~~~DpD 268 (415)
++|+++|++|++++|+|+...+..| ..+++|.||+.+|+.++|.++.++++ .+..+..+++|+.|||||
T Consensus 181 ~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agPg~WNDpD 260 (414)
T KOG2366|consen 181 RALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGPGGWNDPD 260 (414)
T ss_pred HHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCCCCCCChh
Confidence 9999999999999999998888777 57899999999999999999998887 556677889999999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHcCccccccCCCCCChhhhhhccChhhhhhccCCCccccEEeec---CceEEEEEcC
Q 014963 269 MLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKKVRT---DVEIWTAPLS 345 (415)
Q Consensus 269 ~l~vg~~~lt~~E~r~~~~~~a~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~~~~~~~~---d~~vw~~~l~ 345 (415)
||.+|+.++|.+|+++||++||++.+||++|.|++.++++.+++++|+++|+|||||+|.+++.+.. +.++|++|++
T Consensus 261 mL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~ievw~~pls 340 (414)
T KOG2366|consen 261 MLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDSIEVWSGPLS 340 (414)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCceEEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 4899999999
Q ss_pred CCcEEEEEEecC--CCCeeEE-eeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 346 GYRFAVLIVNRD--QWPANVT-THLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 346 ~g~~~Va~fN~~--~~~~~~~-i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
+.+++|+++|+. ..+..++ +.|+.+|+..+..|.++|||++..-....++++++.|+|||++||+++|.
T Consensus 341 ~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~~ 412 (414)
T KOG2366|consen 341 GKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHPS 412 (414)
T ss_pred CceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEec
Confidence 889999999998 5667787 88999999878899999999995222578899999999999999999985
No 5
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=8.5e-76 Score=600.30 Aligned_cols=358 Identities=29% Similarity=0.490 Sum_probs=303.1
Q ss_pred hhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC-------------CCCCCCe
Q 014963 51 NLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-------------RDENGNL 117 (415)
Q Consensus 51 ~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-------------~d~~G~~ 117 (415)
.+..++++++||||||||+.|.|+|||+.++++||. ++.||+++||+||+|||||+... +|++|++
T Consensus 21 ~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrL 99 (633)
T PLN02899 21 ASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRP 99 (633)
T ss_pred ccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCC
Confidence 356789999999999999999999999999999994 68899999999999999998652 5789999
Q ss_pred eecCCCCCC-----cHHHHHHHHHHcCCeEEEEeeCCcccccC-------------------------------------
Q 014963 118 QAKNATFPS-----GIKALADYVHSKGLKLGMYSSAGYYTCSK------------------------------------- 155 (415)
Q Consensus 118 ~~~~~~FP~-----Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~------------------------------------- 155 (415)
+||++|||+ |||+|+||||+||||||||.++|..+|..
T Consensus 100 vPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~ 179 (633)
T PLN02899 100 IPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWM 179 (633)
T ss_pred ccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccC
Confidence 999999998 99999999999999999999998755421
Q ss_pred ---------CCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecCCCCCCcCccc-
Q 014963 156 ---------QMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWG- 225 (415)
Q Consensus 156 ---------~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~p~~~~- 225 (415)
.+||.++|++.++++|++|||||||+|+|+... ...+.|..|.+||+++||+|+|++|. |...+..|.
T Consensus 180 ~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~ey~~ms~AL~aTGRPIvySLsp-G~~~~p~wa~ 257 (633)
T PLN02899 180 SHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEEITYVSEVLKELDRPIVYSLSP-GTSATPTMAK 257 (633)
T ss_pred CCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHHHHHHHHHHHHhCCCeEEEecC-Ccccchhhhh
Confidence 125568889999999999999999999987633 23467999999999999999999986 444444554
Q ss_pred --ccccceEeecCCCCCchhhHHHHHHHhhhhhhcc-------CCCCCCCCCccccCC-------------CCCCHHHHH
Q 014963 226 --FQVGNSWRTTGDITDTFESVMSRADANEVYADYA-------RPGGWNDPDMLEVGN-------------GGMTKDEYI 283 (415)
Q Consensus 226 --~~~~~~~R~s~D~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~DpD~l~vg~-------------~~lt~~E~r 283 (415)
.+++|+||++.|+.+.|.++..+++....|+.+. ++++|||||||.+|. .+||.+|+|
T Consensus 258 ~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~r 337 (633)
T PLN02899 258 EVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQK 337 (633)
T ss_pred hhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHH
Confidence 4678999999999999999988887665555432 235899999999992 259999999
Q ss_pred HHHHHHHHHcCccccccCCCCCChhhhhhccChhhhhhccCCCccccEE-------------------------------
Q 014963 284 IHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGVQAKK------------------------------- 332 (415)
Q Consensus 284 ~~~~~~a~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~~~~~------------------------------- 332 (415)
+||+||||++|||++|+||++|+++.+++|+|+|||||||++++..-.+
T Consensus 338 ThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (633)
T PLN02899 338 TQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQHSTGVGKSDPSVLGLT 417 (633)
T ss_pred HHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEeccccccccccccccccCCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999977321000
Q ss_pred -------------------------------------e------------------------------------------
Q 014963 333 -------------------------------------V------------------------------------------ 333 (415)
Q Consensus 333 -------------------------------------~------------------------------------------ 333 (415)
+
T Consensus 418 ~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 497 (633)
T PLN02899 418 SCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPKQK 497 (633)
T ss_pred ecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCCCC
Confidence 0
Q ss_pred -------------------------------e---c---------------CceEEEEEcCCCcEEEEEEecCCCCeeEE
Q 014963 334 -------------------------------R---T---------------DVEIWTAPLSGYRFAVLIVNRDQWPANVT 364 (415)
Q Consensus 334 -------------------------------~---~---------------d~~vw~~~l~~g~~~Va~fN~~~~~~~~~ 364 (415)
. + ..-+|+..-.+|.+||++||.+.+..+++
T Consensus 498 ~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~~~~~ 577 (633)
T PLN02899 498 RTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEKTKIS 577 (633)
T ss_pred cCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccceeEE
Confidence 0 0 01267777778999999999999999999
Q ss_pred eeccccC--CCC-----CCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEE
Q 014963 365 THLEDFG--IPP-----KTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQ 412 (415)
Q Consensus 365 i~l~~lG--L~~-----~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~ 412 (415)
+.+++|. |.+ ...++.+|+|+++++ +.++++++.+|+.|||+||.|+
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~-~~~~~~~~~~v~~hg~~~~~~~ 631 (633)
T PLN02899 578 AKISDLAKALPGSKNLRTSSCTGHEVWSGKDF-GVIKDSISATVEIHGCALFVLH 631 (633)
T ss_pred EEhhHhHhhccccccccccccceEEeccCCCc-ccccccEEEEeecCceEEEEEe
Confidence 9998872 222 346899999999999 8999999999999999999986
No 6
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=1.2e-72 Score=555.24 Aligned_cols=266 Identities=32% Similarity=0.564 Sum_probs=237.9
Q ss_pred CceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC----------------CCCCCCeeecCCCC
Q 014963 61 PPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV----------------RDENGNLQAKNATF 124 (415)
Q Consensus 61 pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~----------------~d~~G~~~~~~~~F 124 (415)
||||||||+.|+|+|||+.|+++|| +++.||+++||+||+|||||+... ||++|+++||++||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rF 79 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRW 79 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccC
Confidence 8999999999999999999999999 789999999999999999998642 58899999999999
Q ss_pred CC-----cHHHHHHHHHHcCCeEEEEeeCCccccc--------C---------------------------------CCC
Q 014963 125 PS-----GIKALADYVHSKGLKLGMYSSAGYYTCS--------K---------------------------------QMP 158 (415)
Q Consensus 125 P~-----Gl~~l~~~i~~~Glk~Giw~~pg~~~c~--------~---------------------------------~~p 158 (415)
|+ |||+|+||||+||||||||.++|..+|. + .+|
T Consensus 80 Ps~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~ 159 (357)
T PLN03231 80 PSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSE 159 (357)
T ss_pred CCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccch
Confidence 99 9999999999999999999999988885 1 135
Q ss_pred ChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecCCCCCCcCccc---ccccceEeec
Q 014963 159 GSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWG---FQVGNSWRTT 235 (415)
Q Consensus 159 g~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g~~~p~~~~---~~~~~~~R~s 235 (415)
|+++|++.++++|++|||||||+|+|+.......++|..|.+||+++||+|+|++|. |...+..|. .+++|+||++
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~-g~~~~~~~~~~i~~~an~WR~s 238 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSP-GDGATPGLAARVAQLVNMYRVT 238 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecC-CCCCCchhhhhhhhhcCccccc
Confidence 677889999999999999999999997655556789999999999999999999997 333344443 4678999999
Q ss_pred CCCCCchhhHHHHHHHhhhhhh--------ccCCCCCCCCCccccC-------------CCCCCHHHHHHHHHHHHHHcC
Q 014963 236 GDITDTFESVMSRADANEVYAD--------YARPGGWNDPDMLEVG-------------NGGMTKDEYIIHFSLWAISKA 294 (415)
Q Consensus 236 ~D~~~~w~~~~~~~~~~~~~~~--------~~~~~~~~DpD~l~vg-------------~~~lt~~E~r~~~~~~a~~gs 294 (415)
.|+.+.|.++.++++....+.. +++|++|||||||+|| +++||.+|+|+||+||||+.|
T Consensus 239 ~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~S 318 (357)
T PLN03231 239 GDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKS 318 (357)
T ss_pred CCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999888776544432 5689999999999999 457999999999999999999
Q ss_pred ccccccCCCCCChhhhhhccChhhhhhccCCCcc
Q 014963 295 PLLLGCDVRNLTKDTMDIIGNKEVIAINQDPLGV 328 (415)
Q Consensus 295 pL~is~Dl~~l~~~~~~ll~N~~~lai~qd~lG~ 328 (415)
||++|+||++|+++.+++|+|+||||||||++|.
T Consensus 319 PLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 319 PLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred chhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 9999999999999999999999999999999975
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=9.7e-39 Score=321.55 Aligned_cols=301 Identities=26% Similarity=0.391 Sum_probs=183.4
Q ss_pred CCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCC---CCCCeeecCCCCCCcHHHHHH
Q 014963 57 LGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRD---ENGNLQAKNATFPSGIKALAD 133 (415)
Q Consensus 57 ~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d---~~G~~~~~~~~FP~Gl~~l~~ 133 (415)
..++|||+||||+.+++++||+.+++.++.+ +++||++|+|||||+..+.+ +.|+|.+|++|||+||++|++
T Consensus 37 ~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~-----~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~ 111 (394)
T PF02065_consen 37 RDKPPPVGWNSWEAYYFDITEEKILELADAA-----AELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLAD 111 (394)
T ss_dssp TTSS--EEEESHHHHTTG--HHHHHHHHHHH-----HHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHH
T ss_pred CCCCCceEEEcccccCcCCCHHHHHHHHHHH-----HHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHH
Confidence 4789999999999999999999999999998 77899999999999986322 369999999999999999999
Q ss_pred HHHHcCCeEEEEeeCCc------------cccc-----------------CCCCChhHHHHHHH-HHHHHcCCcEEEeec
Q 014963 134 YVHSKGLKLGMYSSAGY------------YTCS-----------------KQMPGSLGYEEQDA-KTFALWGVDYLKYDN 183 (415)
Q Consensus 134 ~i~~~Glk~Giw~~pg~------------~~c~-----------------~~~pg~~~~~~~~~-~~~~~wGvdyiK~D~ 183 (415)
+||++|||||||++|+. .|+. -++|++++|+.+.+ +.+++|||||||+||
T Consensus 112 ~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~ 191 (394)
T PF02065_consen 112 YIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDF 191 (394)
T ss_dssp HHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred HHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 99999999999999864 1221 13688999986655 557999999999999
Q ss_pred CCCCCC---C----ccch----HHHHHHHHHHcCCCEEEEecCCCCCCcCccc-ccccceEeecCCCCCchhhHHHHHHH
Q 014963 184 CYTDGS---K----PMDR----YPIMTRALMKAGRPIYYSLCEWGDMHPALWG-FQVGNSWRTTGDITDTFESVMSRADA 251 (415)
Q Consensus 184 ~~~~~~---~----~~~~----y~~~~~al~~~g~~i~~~~c~~g~~~p~~~~-~~~~~~~R~s~D~~~~w~~~~~~~~~ 251 (415)
+..... . ...+ +.+++++|++..|+++|++|++|+... +++ ..|.+..-+| |..+.++++.-+...
T Consensus 192 n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R~-D~g~l~~~~~~w~S-D~tda~~R~~iq~g~ 269 (394)
T PF02065_consen 192 NRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGGGRF-DPGMLYYTPQSWTS-DNTDALERLRIQYGT 269 (394)
T ss_dssp TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTTT-SHHHHCCSSEEESB-ST-SHHHHHHHHHHH
T ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCcc-ccchheeccccccC-CccchHHHhhhhccc
Confidence 865321 1 1223 336999999999999999999986542 211 2344444444 556665554322221
Q ss_pred hhhhhhccCCCCC--CCCCccccCCCCCCHHHHHHHHHHHHHHcCccccccCCCCCChhhhhhccChhhhhhccC--CCc
Q 014963 252 NEVYADYARPGGW--NDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCDVRNLTKDTMDIIGNKEVIAINQD--PLG 327 (415)
Q Consensus 252 ~~~~~~~~~~~~~--~DpD~l~vg~~~lt~~E~r~~~~~~a~~gspL~is~Dl~~l~~~~~~ll~N~~~lai~qd--~lG 327 (415)
...+.... .+.| .-|.. .++ +.++-+.|.+++ +-+.+.++.|+.++++++++.++. .+++.+. ++.
T Consensus 270 s~~~p~~~-~~~hv~~~p~~-~~~--r~~~l~~r~~~a----~~g~~g~e~dl~~ls~~e~~~~~~--~ia~YK~~r~li 339 (394)
T PF02065_consen 270 SLFYPPEY-MGAHVSASPNH-QTG--RTTPLEFRAHVA----MFGRLGLELDLTKLSEEELAAVKE--QIAFYKSIRPLI 339 (394)
T ss_dssp CTTSSGGG-EEEEEEHSS-T-TTH--HHGGHHHHHHHH----TCSEEEEESTGCGS-HHHHHHHHH--HHHHHHHCHHHH
T ss_pred ccccCHHH-hCCeEEecccc-ccC--Ccccceechhhh----hcCCceeccCcccCCHHHHHHHHH--HHHHHHhHHHHh
Confidence 11111100 0000 00000 011 123344444432 338999999999999999888874 3333322 223
Q ss_pred cccEEeec------CceEEEEEcCCCcEEE-EEEecCCCCeeEEeeccccCCCC
Q 014963 328 VQAKKVRT------DVEIWTAPLSGYRFAV-LIVNRDQWPANVTTHLEDFGIPP 374 (415)
Q Consensus 328 ~~~~~~~~------d~~vw~~~l~~g~~~V-a~fN~~~~~~~~~i~l~~lGL~~ 374 (415)
+.++.++- +...|.-...|++.+| .+|....+.......+.--||+|
T Consensus 340 ~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~~~~~~~~~~~~l~l~gLd~ 393 (394)
T PF02065_consen 340 QSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFRLLSSPNPPPPRLRLRGLDP 393 (394)
T ss_dssp HHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEETSS-SSEE-EEEEE-S--T
T ss_pred cCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEEcccCCCCCCcceeCCCCCc
Confidence 33443332 2345655556665565 46666555544444554458875
No 8
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=100.00 E-value=1.2e-31 Score=280.03 Aligned_cols=342 Identities=15% Similarity=0.199 Sum_probs=235.0
Q ss_pred CCCCc-----eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCC----------------CCC
Q 014963 58 GKSPP-----MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDE----------------NGN 116 (415)
Q Consensus 58 ~~~pp-----~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~----------------~G~ 116 (415)
-++.| +|||||++|+.++||+.|++.++.|.+.|.. +++++||||||....+. .-+
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 56788 9999999999999999999999999887775 69999999999865431 122
Q ss_pred eeecC--------CCCCCcHHHHHHHHHH-cCCe-EEEEeeCCcccccC-------------------------C-----
Q 014963 117 LQAKN--------ATFPSGIKALADYVHS-KGLK-LGMYSSAGYYTCSK-------------------------Q----- 156 (415)
Q Consensus 117 ~~~~~--------~~FP~Gl~~l~~~i~~-~Glk-~Giw~~pg~~~c~~-------------------------~----- 156 (415)
+..+. ..||.|||++++.||+ .|+| +|+|.+...||-+- +
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a 347 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIV 347 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccCcchh
Confidence 33433 2589999999999986 5887 88998764443210 0
Q ss_pred ------------CC-ChhHHHHHHHHHHHHcCCcEEEeecCCCC-----CCC----ccchHH-HHHHHHHHcC--CCEEE
Q 014963 157 ------------MP-GSLGYEEQDAKTFALWGVDYLKYDNCYTD-----GSK----PMDRYP-IMTRALMKAG--RPIYY 211 (415)
Q Consensus 157 ------------~p-g~~~~~~~~~~~~~~wGvdyiK~D~~~~~-----~~~----~~~~y~-~~~~al~~~g--~~i~~ 211 (415)
+| .+..+|+.....+++.|||+||+|.+..- +.. ....|. ++..++.+.+ ..++-
T Consensus 348 ~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~ 427 (775)
T PLN02219 348 MDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCIS 427 (775)
T ss_pred hhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 01 14678999999999999999999987631 111 122333 3444455554 34555
Q ss_pred EecCCCCCCcCcccccccceEeecCCCCCchhhHH-HHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHHHH
Q 014963 212 SLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVM-SRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWA 290 (415)
Q Consensus 212 ~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~-~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~~a 290 (415)
|+|+. ....|..+...+.|.|+|+.+.+.... -++-.+++.+.+.+...|||+||++..+ ..++.|.+.+|
T Consensus 428 CMsh~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFqS~H-----p~A~~HAaaRA 499 (775)
T PLN02219 428 CMCHN---TDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLH-----PAAEYHGAARA 499 (775)
T ss_pred ecccC---chhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhceecC-----ccHHHHHHHHh
Confidence 44432 234555678899999999998765432 2233345555566667899999999754 45588999999
Q ss_pred HHcCccccccCCCCCChhhhhhc--cChhhhhhccCCCccccE-Eeec----C----ceEEEEEcCCCcEEEEEEecCCC
Q 014963 291 ISKAPLLLGCDVRNLTKDTMDII--GNKEVIAINQDPLGVQAK-KVRT----D----VEIWTAPLSGYRFAVLIVNRDQW 359 (415)
Q Consensus 291 ~~gspL~is~Dl~~l~~~~~~ll--~N~~~lai~qd~lG~~~~-~~~~----d----~~vw~~~l~~g~~~Va~fN~~~~ 359 (415)
++|+|+|+||.+.+-+-+.+.-| .+..+++.... |++-+ .+.. | +.+|......| +|++||.+..
T Consensus 500 iSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDclF~Dp~~dg~slLKIwn~n~~~g--viG~FNcqGa 575 (775)
T PLN02219 500 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP--GRPTRDCLFADPARDGTSLLKIWNVNKCTG--VVGVFNCQGA 575 (775)
T ss_pred hcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC--CCcchhhhccccCCCCceEEEEEEcccccc--eEEEEeccCC
Confidence 99999999998877665555433 34445554432 44422 1111 2 46898764444 8999998754
Q ss_pred C-----------------eeEEeecccc-CC------CCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 360 P-----------------ANVTTHLEDF-GI------PPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 360 ~-----------------~~~~i~l~~l-GL------~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
. .+-.++..|+ |+ .-+..|.|+-.-+++-..-+....++++|++.+..||.+.|+
T Consensus 576 gW~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w~~~~~vy~~~sg~l~~l~~~~~~~vtL~~~~~Ei~tv~Pv 654 (775)
T PLN02219 576 GWCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDWSGDSVVYAYKSGEVVRLPKGASIPVTLKVLEYELFHFCPL 654 (775)
T ss_pred CCCchhhccccccCCCcceEEEEcchhccchhhccccCcCCCEEEEEeccCeEEEcCCCCceEEEecCCcEEEEEEeeE
Confidence 3 4456777777 44 224456677666666431235667899999999999999986
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.97 E-value=3.8e-30 Score=269.45 Aligned_cols=340 Identities=15% Similarity=0.217 Sum_probs=229.0
Q ss_pred CCCc-----eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCC----------------Ce
Q 014963 59 KSPP-----MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENG----------------NL 117 (415)
Q Consensus 59 ~~pp-----~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G----------------~~ 117 (415)
++.| +|||||++||.++||+.|++.++.|++.|.. .++++||||||....|..+ ++
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f 272 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHI 272 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhccc
Confidence 4778 9999999999999999999999999887765 6999999999986332221 23
Q ss_pred eecCCCCC-------------CcHHHHHHHHHH-cCCe-EEEEeeCCcccccC------------------CCCC-----
Q 014963 118 QAKNATFP-------------SGIKALADYVHS-KGLK-LGMYSSAGYYTCSK------------------QMPG----- 159 (415)
Q Consensus 118 ~~~~~~FP-------------~Gl~~l~~~i~~-~Glk-~Giw~~pg~~~c~~------------------~~pg----- 159 (415)
+.+. ||| .|||++++.||+ .|+| +|+|.+...||-+- ..||
T Consensus 273 ~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~ 351 (758)
T PLN02355 273 KENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNE 351 (758)
T ss_pred cccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccC
Confidence 3443 676 499999999996 5887 89998754333210 0011
Q ss_pred --------------------hhHHHHHHHHHHHHcCCcEEEeecCCCC-----CCC----ccchHH-HHHHHHHHcC--C
Q 014963 160 --------------------SLGYEEQDAKTFALWGVDYLKYDNCYTD-----GSK----PMDRYP-IMTRALMKAG--R 207 (415)
Q Consensus 160 --------------------~~~~~~~~~~~~~~wGvdyiK~D~~~~~-----~~~----~~~~y~-~~~~al~~~g--~ 207 (415)
+..+|+.....+++.|||+||+|.+..- +.. ....|. ++..++.+.+ .
T Consensus 352 ~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~n 431 (758)
T PLN02355 352 PCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPDN 431 (758)
T ss_pred cchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4678899999999999999999987541 111 122233 3444455553 4
Q ss_pred CEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHH-HHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHH
Q 014963 208 PIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVM-SRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHF 286 (415)
Q Consensus 208 ~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~-~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~ 286 (415)
.++-|+|+. ....|..+...+.|.|+|+.+.+.... -++-.+++.+.+.+...|||+||++..+ ...+.|.
T Consensus 432 gvI~CMs~~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~h-----p~A~~HA 503 (758)
T PLN02355 432 GIISCMSHN---TDGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLH-----PMAEYHA 503 (758)
T ss_pred ceEEecccC---chhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCcccceecC-----ccHHHHH
Confidence 554444432 234556678899999999998776432 2233455556666777899999999753 4468899
Q ss_pred HHHHHHcCccccccCCCCCChhhhhhc--cChhhhhhccCCCccccE-Eeec----C----ceEEEEEcCCCcEEEEEEe
Q 014963 287 SLWAISKAPLLLGCDVRNLTKDTMDII--GNKEVIAINQDPLGVQAK-KVRT----D----VEIWTAPLSGYRFAVLIVN 355 (415)
Q Consensus 287 ~~~a~~gspL~is~Dl~~l~~~~~~ll--~N~~~lai~qd~lG~~~~-~~~~----d----~~vw~~~l~~g~~~Va~fN 355 (415)
+.+|++|+|+|+||.+.+-+-+.+.-| .+..+++.... |++-+ .+.. | ..+|.... ++-+|++||
T Consensus 504 aaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~p--g~PtrDclF~Dp~~dg~slLKIwn~nk--~sGviG~FN 579 (758)
T PLN02355 504 AARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP--GRPTRDCLFSDPARDGKSLLKIWNLNE--FTGVIGVFN 579 (758)
T ss_pred HHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccC--CCcchhhhccccccCCceEEEEEEcCC--cccEEEEEe
Confidence 999999999999998777665555433 34445554433 44432 1111 2 45788654 444899999
Q ss_pred cCCCC---------------ee--EEeeccccCC-------CCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEE
Q 014963 356 RDQWP---------------AN--VTTHLEDFGI-------PPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLL 411 (415)
Q Consensus 356 ~~~~~---------------~~--~~i~l~~lGL-------~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l 411 (415)
.+... .+ -.+.++++.+ ..+..+.|+..-+++-+..+.+..++++|.+-+..||.+
T Consensus 580 cqGagw~~~~~~~~~~~~~~~~l~~~v~~~Dv~~~~~~a~~~w~~~~~vy~~~sg~l~~~~~~~~~~vtL~~~~~eiftv 659 (758)
T PLN02355 580 CQGAGWCRVGKKNLIHDEQPGTITGVIRAKDVDYLPKVADDEWTGDSIVYSHLGGEVVYLPKDASLPVTLKSREYEVFTV 659 (758)
T ss_pred ccCCcccchhccccccCCCCceeEEEEccccccchhhccccCCCCCeEEEEecCceEEecCCCCceEEEecCCceEEEEE
Confidence 76332 12 3455566521 123345666655555431234678899999999999999
Q ss_pred EeC
Q 014963 412 QPI 414 (415)
Q Consensus 412 ~p~ 414 (415)
.|+
T Consensus 660 ~Pi 662 (758)
T PLN02355 660 VPV 662 (758)
T ss_pred eeE
Confidence 996
No 10
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.97 E-value=1.1e-29 Score=265.61 Aligned_cols=335 Identities=16% Similarity=0.179 Sum_probs=223.7
Q ss_pred eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCC-------------C--------Ceeec-
Q 014963 63 MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDEN-------------G--------NLQAK- 120 (415)
Q Consensus 63 ~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~-------------G--------~~~~~- 120 (415)
+|||||++||.++|++.|++.++.|++.|.+ +.+++||||||+...+.. | +++.+
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 6999999999999999999999999888776 689999999998532211 1 22334
Q ss_pred --------CCCCCCcHHHHHHHHHHc--CCe-EEEEeeCCcccccC----------------CCCC--------------
Q 014963 121 --------NATFPSGIKALADYVHSK--GLK-LGMYSSAGYYTCSK----------------QMPG-------------- 159 (415)
Q Consensus 121 --------~~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg~~~c~~----------------~~pg-------------- 159 (415)
++.||.|||.+++.||++ |+| +|+|.+...||-+- ..||
T Consensus 292 KF~~~~~~~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~ 371 (777)
T PLN02711 292 KFRDYVSPKSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIV 371 (777)
T ss_pred cccccccccCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccc
Confidence 445678999999999995 687 89998764433210 0111
Q ss_pred -----------hhHHHHHHHHHHHHcCCcEEEeecCCCC-----CCC----ccc-hHHHHHHHHHHcCC--CEEEEecCC
Q 014963 160 -----------SLGYEEQDAKTFALWGVDYLKYDNCYTD-----GSK----PMD-RYPIMTRALMKAGR--PIYYSLCEW 216 (415)
Q Consensus 160 -----------~~~~~~~~~~~~~~wGvdyiK~D~~~~~-----~~~----~~~-~y~~~~~al~~~g~--~i~~~~c~~ 216 (415)
+..+|+.....+++.|||+||+|.+..- ... ... .+.++..++.+.+. .++-++|+
T Consensus 372 ~~g~glv~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I~CMs~- 450 (777)
T PLN02711 372 NNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEH- 450 (777)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeeccc-
Confidence 5678999999999999999999987541 111 112 23345555666443 45444443
Q ss_pred CCCCcC-cc-cccccceEeecCCCCCc----------hhhHHHHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHH
Q 014963 217 GDMHPA-LW-GFQVGNSWRTTGDITDT----------FESVMSRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYII 284 (415)
Q Consensus 217 g~~~p~-~~-~~~~~~~~R~s~D~~~~----------w~~~~~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~ 284 (415)
.+. .+ ..+...+.|.|+|+.+. |-.- .++..+++.+.+.+...|||+||++..+ ...+.
T Consensus 451 ---~~d~~~~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~-~Hi~~~AyNSLllg~~v~PDWDMF~S~H-----p~A~~ 521 (777)
T PLN02711 451 ---CNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQG-CHMVHCAYNSLWMGNFIHPDWDMFQSTH-----PCAEF 521 (777)
T ss_pred ---CchhhhccCcccceeeecccccCCCCcccccccccccc-ceeeeehhhhhhhcccccCCchhhhccC-----chHHH
Confidence 221 11 23566789999998753 3111 1223344555566777899999999753 46688
Q ss_pred HHHHHHHHcCccccccCCCCCChhhhhh--ccChhhhhhccCCCccccEE-eec----C----ceEEEEEcCCCcEEEEE
Q 014963 285 HFSLWAISKAPLLLGCDVRNLTKDTMDI--IGNKEVIAINQDPLGVQAKK-VRT----D----VEIWTAPLSGYRFAVLI 353 (415)
Q Consensus 285 ~~~~~a~~gspL~is~Dl~~l~~~~~~l--l~N~~~lai~qd~lG~~~~~-~~~----d----~~vw~~~l~~g~~~Va~ 353 (415)
|.+.+|++|+|+|+||.+.+-+-+.+.- +.+..+++.... |.+.|. +.. | ..+|......| +|++
T Consensus 522 HAaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~p--g~PtrDcLF~DP~~dg~slLKIwn~nk~tG--viG~ 597 (777)
T PLN02711 522 HAASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYY--ALPTRDCLFEDPLHDGKTMLKIWNLNKFTG--VIGA 597 (777)
T ss_pred HHHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCC--CCccchhhccccccCCceEEEEEeecCCcc--eEEE
Confidence 9999999999999999887666554443 334456655543 444332 111 2 45788775455 8999
Q ss_pred EecCCCC-----------------eeEEeeccccCCCC---------CCeEEEEEecCCcccccccCceEEEEECCCcEE
Q 014963 354 VNRDQWP-----------------ANVTTHLEDFGIPP---------KTSVTARDLWEHKTLETPLAGNLSANLDPHTCK 407 (415)
Q Consensus 354 fN~~~~~-----------------~~~~i~l~~lGL~~---------~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ 407 (415)
||.+... .+-.++.+|+.... ...|.|+..-+++-.-.+.+..++++|.+-+..
T Consensus 598 FNcqgagW~~~~~~~~~~~~~~~~vt~~v~~~Dv~w~~~~~~~~~~~~~~y~vy~~~s~~l~~l~~~~~l~vtL~~~~~E 677 (777)
T PLN02711 598 FNCQGGGWCRETRRNKCASQFSHTVTAKASPKDIEWNSGKSPISIEGVQVFAVYLFQSKKLVLSKPSENLEISLEPFNFE 677 (777)
T ss_pred EEecCCcccchhhhcccccCCCCceEEEEchHHhcccCCCCCcCccCceeEEEEEecCCeEEECCCCCceEEEecCcceE
Confidence 9985333 44567777773322 223556655555532123467889999999999
Q ss_pred EEEEEeC
Q 014963 408 MYLLQPI 414 (415)
Q Consensus 408 ll~l~p~ 414 (415)
||.+.|+
T Consensus 678 iftv~Pv 684 (777)
T PLN02711 678 LITVSPV 684 (777)
T ss_pred EEEEeee
Confidence 9999996
No 11
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.97 E-value=4e-29 Score=261.04 Aligned_cols=336 Identities=17% Similarity=0.201 Sum_probs=220.2
Q ss_pred eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCC------------CC---eeecCCCCCC-
Q 014963 63 MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDEN------------GN---LQAKNATFPS- 126 (415)
Q Consensus 63 ~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~------------G~---~~~~~~~FP~- 126 (415)
+|||||++||.++|++.|++.++.|++.|.. .++++||||||....|.. -+ +..+ +|||+
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~ 279 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKK 279 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccCccc-cccccc
Confidence 6999999999999999999999999887765 699999999998643321 12 3344 78874
Q ss_pred -----cHHHHHHHHH-HcCCe-EEEEeeCCccccc-------------------------CC-----------------C
Q 014963 127 -----GIKALADYVH-SKGLK-LGMYSSAGYYTCS-------------------------KQ-----------------M 157 (415)
Q Consensus 127 -----Gl~~l~~~i~-~~Glk-~Giw~~pg~~~c~-------------------------~~-----------------~ 157 (415)
|||.+++.|| +.|+| +|+|.+...||-+ .+ +
T Consensus 280 ~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~ 359 (750)
T PLN02684 280 DDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVN 359 (750)
T ss_pred cCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccC
Confidence 9999999998 55888 8899875433311 00 1
Q ss_pred CC-hhHHHHHHHHHHHHcCCcEEEeecCCCC-----CC----CccchHH-HHHHHHHHcCC--CEEEEecCCCCCCcCcc
Q 014963 158 PG-SLGYEEQDAKTFALWGVDYLKYDNCYTD-----GS----KPMDRYP-IMTRALMKAGR--PIYYSLCEWGDMHPALW 224 (415)
Q Consensus 158 pg-~~~~~~~~~~~~~~wGvdyiK~D~~~~~-----~~----~~~~~y~-~~~~al~~~g~--~i~~~~c~~g~~~p~~~ 224 (415)
|+ +..+|+.....+++.|||+||+|.+..- +. .....|. ++..++.+.+. .++-|+|+. ....|
T Consensus 360 P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~---~d~i~ 436 (750)
T PLN02684 360 PKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHN---TDALY 436 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccC---chhhh
Confidence 11 4678999999999999999999997631 11 1122333 34444555443 354444432 22346
Q ss_pred cccccceEeecCCCCCchhhHH-HHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHcCccccccCCC
Q 014963 225 GFQVGNSWRTTGDITDTFESVM-SRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCDVR 303 (415)
Q Consensus 225 ~~~~~~~~R~s~D~~~~w~~~~-~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~~a~~gspL~is~Dl~ 303 (415)
..+...+.|.|+|+.+.+.... -++..+++.+.+.+.-.|||+||++..+ ...+.|.+.+|++|+|+|+||.+.
T Consensus 437 ~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS~h-----p~A~~HAaaRAisGGPIYvSD~PG 511 (750)
T PLN02684 437 CSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHSLH-----PAAEYHASARAISGGPLYVSDAPG 511 (750)
T ss_pred cccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCcccceecC-----ccHHHHHHHHhhcCCceEEecCCC
Confidence 6678899999999998765432 2233455555666667899999999754 445889999999999999999887
Q ss_pred CCChhhhhhc--cChhhhhhccCCCccccE-Eeec----C----ceEEEEEcCCCcEEEEEEecCCCCeeEEeecccc-C
Q 014963 304 NLTKDTMDII--GNKEVIAINQDPLGVQAK-KVRT----D----VEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDF-G 371 (415)
Q Consensus 304 ~l~~~~~~ll--~N~~~lai~qd~lG~~~~-~~~~----d----~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~l-G 371 (415)
+-+-+.+.-| .+..+++.... |++-+ .+.. | +.+|......| +|++||.+...-....+..++ +
T Consensus 512 ~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDcLF~DP~~dg~slLKIwn~n~~tG--ViG~FNcqGagw~~~~~~~~~~~ 587 (750)
T PLN02684 512 KHNFELLKKLVLPDGSILRARLP--GRPTRDCLFSDPARDGVSLLKIWNMNKYTG--VLGVYNCQGAAWSSTERKNIFHQ 587 (750)
T ss_pred CccHHHHHhhhCCCCcccccccC--CccchhhhccCcccCCccEEEEEEecCCCc--eEEEEeccCCccCccccccccCC
Confidence 7665555433 34445554433 44432 1122 2 45888875444 899999875332111111111 1
Q ss_pred CC------------------------CCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 372 IP------------------------PKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 372 L~------------------------~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
.. .+..|.|+-.-+++-..-+.+..++++|++.+..||.+.|+
T Consensus 588 ~~~~~~s~~v~~~Dv~~~~~~a~~~~w~~~~~vy~h~s~~l~~l~~~~~~~vtL~~~~~Ei~t~~Pv 654 (750)
T PLN02684 588 TKTDSLTGSIRGRDVHLIAEAATDPNWNGDCAVYCHSRGELITMPYNASLPVSLKVLEHEIFTVTPI 654 (750)
T ss_pred CCCccceeeecccccchhhhhccCCCCCCCEEEEEecCCeEEecCCCCceEEEecCCcEEEEEEeeE
Confidence 10 11223333333333211134567889999999999999986
No 12
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.96 E-value=9e-28 Score=253.27 Aligned_cols=337 Identities=18% Similarity=0.263 Sum_probs=221.9
Q ss_pred eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCC------------C-----Ce--------
Q 014963 63 MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDEN------------G-----NL-------- 117 (415)
Q Consensus 63 ~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~------------G-----~~-------- 117 (415)
+|||||++|+.++|++.|++.++.|.+.|++ +.+++||||||+..++.. | +|
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 6999999999999999999999999887775 689999999998643322 1 11
Q ss_pred -eec-----CCCCCCcHHHHHHHHHHc--CCe-EEEEeeCCcccccC-----------------------C---------
Q 014963 118 -QAK-----NATFPSGIKALADYVHSK--GLK-LGMYSSAGYYTCSK-----------------------Q--------- 156 (415)
Q Consensus 118 -~~~-----~~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg~~~c~~-----------------------~--------- 156 (415)
..+ ++.||.||+.+++.||++ |+| +|+|.+.-.||-+- +
T Consensus 274 F~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~ 353 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSI 353 (747)
T ss_pred hhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCcccccccc
Confidence 111 246999999999999987 887 89998754333110 0
Q ss_pred --------CC-ChhHHHHHHHHHHHHcCCcEEEeecCCCCC-----C-C---ccchHH-HHHHHHHHcCC--CEEEEecC
Q 014963 157 --------MP-GSLGYEEQDAKTFALWGVDYLKYDNCYTDG-----S-K---PMDRYP-IMTRALMKAGR--PIYYSLCE 215 (415)
Q Consensus 157 --------~p-g~~~~~~~~~~~~~~wGvdyiK~D~~~~~~-----~-~---~~~~y~-~~~~al~~~g~--~i~~~~c~ 215 (415)
.| .++.+|+..++.+++.|||+||+|.+..-. . . ....|. +|..++.+... .++-|+|+
T Consensus 354 ~~~g~glv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CMsh 433 (747)
T PF05691_consen 354 VKGGLGLVDPEDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCMSH 433 (747)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Confidence 11 156789999999999999999999975421 1 1 122333 45555555543 56555544
Q ss_pred CCCCCcCccc-ccccceEeecCCCCCchhhH---------HHHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHH
Q 014963 216 WGDMHPALWG-FQVGNSWRTTGDITDTFESV---------MSRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIH 285 (415)
Q Consensus 216 ~g~~~p~~~~-~~~~~~~R~s~D~~~~w~~~---------~~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~ 285 (415)
.+ ...|. .....+.|+|+|+.+.+... .-++..+++.+.+.+...|+|+||++.-+ ...+.|
T Consensus 434 ~~---~~l~~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~~g~~~~PDwDMF~S~h-----~~A~~H 505 (747)
T PF05691_consen 434 NP---DNLYHSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLLLGQFVWPDWDMFQSSH-----PAAEFH 505 (747)
T ss_pred Cc---cchhcccccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHhhcCCCcccccccC-----ccHHHH
Confidence 22 23344 45668899999998864422 12233445555555666899999999743 456889
Q ss_pred HHHHHHHcCccccccCCCCCChhhhhh--ccChhhhhhccCCCccccE-Eeec----C----ceEEEEEcCCCcEEEEEE
Q 014963 286 FSLWAISKAPLLLGCDVRNLTKDTMDI--IGNKEVIAINQDPLGVQAK-KVRT----D----VEIWTAPLSGYRFAVLIV 354 (415)
Q Consensus 286 ~~~~a~~gspL~is~Dl~~l~~~~~~l--l~N~~~lai~qd~lG~~~~-~~~~----d----~~vw~~~l~~g~~~Va~f 354 (415)
.+.+|++|+|+|+||.+.+.+-+.+.- +.+..+++.... |.+-+ .+.. | +.+|......| +|++|
T Consensus 506 AaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~p--g~Pt~d~Lf~dp~~d~~~lLKi~n~n~~~g--vig~F 581 (747)
T PF05691_consen 506 AAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHP--GRPTRDCLFEDPLRDGKSLLKIWNLNKFTG--VIGVF 581 (747)
T ss_pred HHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccC--CCCChhhhcccCCCCCceeEEEEecCCccc--eEEEE
Confidence 999999999999999887776655443 345556655543 43322 1111 2 46788765444 89999
Q ss_pred ecCCC---------------CeeEE--eeccccCCC---------CCCeEEEEEecCCcccccc-cCceEEEEECCCcEE
Q 014963 355 NRDQW---------------PANVT--THLEDFGIP---------PKTSVTARDLWEHKTLETP-LAGNLSANLDPHTCK 407 (415)
Q Consensus 355 N~~~~---------------~~~~~--i~l~~lGL~---------~~~~~~v~Dlw~g~~l~~~-~~~~l~~~l~ph~~~ 407 (415)
|.+.. +.+++ +.-.++... ....+.|+..-+++-.--+ ....+.++|.|-...
T Consensus 582 N~qgagw~~~~~~~~~~~~~~~~~t~~v~~~Dv~~~~~~~~~~~~~~~~~avY~~~~~~l~~l~~k~~~~~vtL~~~~~E 661 (747)
T PF05691_consen 582 NCQGAGWCREERKNKSHDECPGTLTGSVRPSDVEWISEVAGADDGWNGDFAVYSHRSGELVLLPPKSESLPVTLKPLEFE 661 (747)
T ss_pred ecCCCcccchhhhccccCCCCcceEeeccccccceeccccccCcCCCccEEEEEcCCCeEEEecCCCCCceEEEcCcceE
Confidence 97521 12222 222333111 1233555555454422113 356889999999999
Q ss_pred EEEEEeC
Q 014963 408 MYLLQPI 414 (415)
Q Consensus 408 ll~l~p~ 414 (415)
||.+.|+
T Consensus 662 l~tv~Pv 668 (747)
T PF05691_consen 662 LFTVSPV 668 (747)
T ss_pred EEEEeeE
Confidence 9999997
No 13
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.6e-26 Score=228.93 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=132.7
Q ss_pred ccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCC---CCCeeecCCCCCCcHH
Q 014963 53 LANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDE---NGNLQAKNATFPSGIK 129 (415)
Q Consensus 53 ~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~---~G~~~~~~~~FP~Gl~ 129 (415)
+++-..++.|+|||||+++|+++|++.++++++.+ |+.|+|.|+|||||+..+.|. .|||.++.+|||+|+.
T Consensus 284 ~~~~~~kprPi~~nsWea~Yfd~t~e~ile~vk~a-----kk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE 358 (687)
T COG3345 284 PRPRVKKPRPIGWNSWEAYYFDFTEEEILENVKEA-----KKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIE 358 (687)
T ss_pred cccccCCCCcceeeceeeeeecCCHHHHHHHHHHH-----hhcCeEEEEEccccccccCcchhhhhceecchhhccccHH
Confidence 33455677899999999999999999999999998 778899999999999864443 7999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeeCCcc------------ccc---C-----------------------CCCChhHHHHHHHHHH
Q 014963 130 ALADYVHSKGLKLGMYSSAGYY------------TCS---K-----------------------QMPGSLGYEEQDAKTF 171 (415)
Q Consensus 130 ~l~~~i~~~Glk~Giw~~pg~~------------~c~---~-----------------------~~pg~~~~~~~~~~~~ 171 (415)
++++.|++.|++||||++|+.- |.- + .++-++.+....++.+
T Consensus 359 ~li~~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~yl 438 (687)
T COG3345 359 ELIEAIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYL 438 (687)
T ss_pred HHHHHHHHcCCccceeecchhcccchHHHhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHH
Confidence 9999999999999999999741 110 0 1233455567788899
Q ss_pred H-HcCCcEEEeecCCCCCCCccchHH--HHHHHHHHcCCCEEEEecCCCCC
Q 014963 172 A-LWGVDYLKYDNCYTDGSKPMDRYP--IMTRALMKAGRPIYYSLCEWGDM 219 (415)
Q Consensus 172 ~-~wGvdyiK~D~~~~~~~~~~~~y~--~~~~al~~~g~~i~~~~c~~g~~ 219 (415)
+ +||..++|+|+...+.....+ |. .+.+.|....+.+.|+.|..|+.
T Consensus 439 kwdmnr~l~klg~~~~~~l~qqr-y~ly~l~~~l~~k~~~i~FeScasGg~ 488 (687)
T COG3345 439 KWDMNRELFKLGFLFWGALPQQR-YQLYRLFDQLNLKFPHILFESCASGGE 488 (687)
T ss_pred HHHhCcceeecCCCCCccccchH-HHHHHHHHHhhhcCCCchhhhhccccc
Confidence 8 999999999999887654333 44 67788888999999999998854
No 14
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.93 E-value=4.8e-24 Score=222.94 Aligned_cols=337 Identities=16% Similarity=0.164 Sum_probs=215.9
Q ss_pred eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCC--------------------Cee----
Q 014963 63 MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENG--------------------NLQ---- 118 (415)
Q Consensus 63 ~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G--------------------~~~---- 118 (415)
+|||||++||.+++++.|.+-++.|++.|.. .++++||||||..+.|..+ .+.
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~p---prfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVP---PRFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCC---ccEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 6999999999999999999999999887776 4899999999976433110 000
Q ss_pred -----------ecC------------------------------------------------------------------
Q 014963 119 -----------AKN------------------------------------------------------------------ 121 (415)
Q Consensus 119 -----------~~~------------------------------------------------------------------ 121 (415)
+++
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 110
Q ss_pred -----CCCCCcHHHHHHHHHHc--CCe-EEEEeeCCcccccC---------------CCCC-------------------
Q 014963 122 -----ATFPSGIKALADYVHSK--GLK-LGMYSSAGYYTCSK---------------QMPG------------------- 159 (415)
Q Consensus 122 -----~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg~~~c~~---------------~~pg------------------- 159 (415)
+.=|.|||.+++.||++ |+| .++|.+.-.||-+- ..||
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~g 460 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIG 460 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCcee
Confidence 12235999999999876 466 88898764443220 0122
Q ss_pred ------hhHHHHHHHHHHHHcCCcEEEeecCCCC-----CC----Cc-cchHHHHHHHHHHcCCC--EEEEecCCCCCCc
Q 014963 160 ------SLGYEEQDAKTFALWGVDYLKYDNCYTD-----GS----KP-MDRYPIMTRALMKAGRP--IYYSLCEWGDMHP 221 (415)
Q Consensus 160 ------~~~~~~~~~~~~~~wGvdyiK~D~~~~~-----~~----~~-~~~y~~~~~al~~~g~~--i~~~~c~~g~~~p 221 (415)
+..+|+.....+++.|||+||+|.+..- +. .. ...|.++.+.+++.... ++-++|+.. .
T Consensus 461 lv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~---~ 537 (865)
T PLN02982 461 LVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN---D 537 (865)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc---h
Confidence 5678999999999999999999987631 11 11 22344566667666543 444433321 1
Q ss_pred Ccc-cccccceEeecCCCCCc------hhhHH---HHHHHhhhhhhccCCCCCCCCCccccCCCCCCHHHHHHHHHHHHH
Q 014963 222 ALW-GFQVGNSWRTTGDITDT------FESVM---SRADANEVYADYARPGGWNDPDMLEVGNGGMTKDEYIIHFSLWAI 291 (415)
Q Consensus 222 ~~~-~~~~~~~~R~s~D~~~~------w~~~~---~~~~~~~~~~~~~~~~~~~DpD~l~vg~~~lt~~E~r~~~~~~a~ 291 (415)
..| ..+...+.|.|+|+.+. |.... -++..+++.+.+.+...|||+||++.. ..-.+.|.+.+|+
T Consensus 538 ~~~~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~-----H~~A~fHAaaRAI 612 (865)
T PLN02982 538 FFFLGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSD-----HLCAEFHAGSRAI 612 (865)
T ss_pred hhhccCCcceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhcccc-----CchHHHHHHHHhh
Confidence 122 24566788999998763 32111 123334455556677789999999974 3566889999999
Q ss_pred HcCccccccCCCCCChhhhhhc--cChhhhhhccCCCccccEE-eec----C----ceEEEEEcCCCcEEEEEEecCCC-
Q 014963 292 SKAPLLLGCDVRNLTKDTMDII--GNKEVIAINQDPLGVQAKK-VRT----D----VEIWTAPLSGYRFAVLIVNRDQW- 359 (415)
Q Consensus 292 ~gspL~is~Dl~~l~~~~~~ll--~N~~~lai~qd~lG~~~~~-~~~----d----~~vw~~~l~~g~~~Va~fN~~~~- 359 (415)
+|+|+|+||.+.+-+-+.+.-| ....+++.... |.|-|. +.. | ..+|....-.| +|++||....
T Consensus 613 sGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~p--g~PTrDcLF~DPl~DGks~LKIWN~Nk~~G--ViG~FNCQGag 688 (865)
T PLN02982 613 CGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHY--ALPTRDCLFKNPLFDKKTILKIWNFNKFGG--VIGAFNCQGAG 688 (865)
T ss_pred cCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCC--CCCCcchhccCcccCCceEEEEEeccCcCc--eEEEEEeccCC
Confidence 9999999988877665544433 23345544433 333221 111 2 46888766566 7899995422
Q ss_pred --------------Cee--EEeeccccCCC---------CCCeEEEEEecCCccccccc-CceEEEEECCCcEEEEEEEe
Q 014963 360 --------------PAN--VTTHLEDFGIP---------PKTSVTARDLWEHKTLETPL-AGNLSANLDPHTCKMYLLQP 413 (415)
Q Consensus 360 --------------~~~--~~i~l~~lGL~---------~~~~~~v~Dlw~g~~l~~~~-~~~l~~~l~ph~~~ll~l~p 413 (415)
+.+ -++..+|+... ....+.|+..-+++-+--+. ...++++|.+-...||.+.|
T Consensus 689 W~~~~~~~~~~~~~~~~vtg~v~~~Dve~~~~~~~a~~~~~~~~~vY~~~~~el~~~~~~~~~~~vtL~~~e~elftv~P 768 (865)
T PLN02982 689 WDPKEHRIKGYSECYKPVSGSVHVSDIEWDQKPEASQMGEAEEYAVYLNQAEELLLMTPKSEAIQITLQPSSFELFSFVP 768 (865)
T ss_pred CCchhccccccCCCCcceEEEEcHHHcccccccccccCCCcccEEEEEecCceEEEecCCCCcceEEeccceeEEEEEee
Confidence 222 34555565332 12335566544444321123 46789999999999999998
Q ss_pred C
Q 014963 414 I 414 (415)
Q Consensus 414 ~ 414 (415)
+
T Consensus 769 I 769 (865)
T PLN02982 769 V 769 (865)
T ss_pred e
Confidence 6
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.75 E-value=1.6e-16 Score=156.39 Aligned_cols=169 Identities=19% Similarity=0.371 Sum_probs=124.5
Q ss_pred CCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc
Q 014963 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK 138 (415)
Q Consensus 59 ~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~ 138 (415)
-++|+ ||+|+.++..+||+.|++.++.+++.++ .++.|+||++|+.. .|+|+.|+++||+ ++.++++||++
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~~----~g~f~~d~~~FPd-p~~mi~~l~~~ 82 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDNGF---PNGQIEIDDNWETC----YGDFDFDPTKFPD-PKGMIDQLHDL 82 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHcCC---CCCeEEeCCCcccc----CCccccChhhCCC-HHHHHHHHHHC
Confidence 56677 9999999999999999999999988766 48999999999975 7999999999998 99999999999
Q ss_pred CCeEEEEeeCCcc--------------cc---------------------cCCCCChhHHHHHHHHHHH-HcCCcEEEee
Q 014963 139 GLKLGMYSSAGYY--------------TC---------------------SKQMPGSLGYEEQDAKTFA-LWGVDYLKYD 182 (415)
Q Consensus 139 Glk~Giw~~pg~~--------------~c---------------------~~~~pg~~~~~~~~~~~~~-~wGvdyiK~D 182 (415)
|+|+++|++|... .+ ..++|.+++|+.+.++.+. ++|||++|+|
T Consensus 83 G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 83 GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 9999999998531 00 0136778899888887765 9999999999
Q ss_pred cCCCCCC----------CccchHH-HHHHHHHHcCCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhH
Q 014963 183 NCYTDGS----------KPMDRYP-IMTRALMKAGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESV 245 (415)
Q Consensus 183 ~~~~~~~----------~~~~~y~-~~~~al~~~g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~ 245 (415)
++..... .....|. .+.++..+.+ ++++.-+.+.. .++.-... +.|....|+..
T Consensus 163 ~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg~~g-------~~~~~~~w-~GD~~s~W~~~ 227 (303)
T cd06592 163 AGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAGWRS-------QGLPLFVR-MMDKDSSWGGD 227 (303)
T ss_pred CCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEeeeec-------CCCCeeEE-cCCCCCCCCCC
Confidence 9865211 0112343 3444444444 45554333221 12332222 56888899876
No 16
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=99.58 E-value=6.9e-15 Score=141.05 Aligned_cols=223 Identities=16% Similarity=0.205 Sum_probs=133.3
Q ss_pred EEecccccCC-------CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee-ecCCCCCCcHHHHHHHH
Q 014963 64 GWNSWNHFWC-------DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ-AKNATFPSGIKALADYV 135 (415)
Q Consensus 64 GWnsW~~~~~-------~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~-~~~~~FP~Gl~~l~~~i 135 (415)
-|.-|+.... .+|.+..++.+|++ +++|++|++||+||.....+...+.. +.+. ..|++|++|.
T Consensus 11 ~W~Ww~~~~~~~~~~~~g~~t~~~k~yIDfA-----a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya 82 (273)
T PF10566_consen 11 AWSWWSMHNGKGVGFKHGATTETQKRYIDFA-----AEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYA 82 (273)
T ss_dssp EECTCCCCTTSSBSS-BSSSHHHHHHHHHHH-----HHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHH
T ss_pred EEeecccCCCCCCCCcCCCCHHHHHHHHHHH-----HHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHH
Confidence 4776654444 68999999999998 67789999999999864222222221 1111 2499999999
Q ss_pred HHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecC
Q 014963 136 HSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCE 215 (415)
Q Consensus 136 ~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~ 215 (415)
++||+++-||......+-... .....+..++++++|||..||+||...+++..++.|..+.+...+.+.-+-|++|.
T Consensus 83 ~~KgVgi~lw~~~~~~~~~~~---~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 83 KEKGVGIWLWYHSETGGNVAN---LEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHTT-EEEEEEECCHTTBHHH---HHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HHcCCCEEEEEeCCcchhhHh---HHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 999999999998543111000 12225888999999999999999999988777888988888888888888888875
Q ss_pred CCCCCcCcccccccceEeecCCCCCchhhHH------HHHHHhhhh-hhccCCCCCCCCCccc--------cCCCCCCHH
Q 014963 216 WGDMHPALWGFQVGNSWRTTGDITDTFESVM------SRADANEVY-ADYARPGGWNDPDMLE--------VGNGGMTKD 280 (415)
Q Consensus 216 ~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~------~~~~~~~~~-~~~~~~~~~~DpD~l~--------vg~~~lt~~ 280 (415)
.|..+.++|+|++-...-....+.... ...+...++ +..+||.-|..-=|-. .+....|.
T Consensus 160 ----kPtG~~RTyPN~mT~EgVrG~E~~~~~~~~~~~p~h~~~lPFTR~l~GpmDyTPg~f~~~~~~~~~~~~~~~~tT- 234 (273)
T PF10566_consen 160 ----KPTGLRRTYPNLMTREGVRGQEYNKWSGDGGNPPEHNTTLPFTRMLAGPMDYTPGAFSNRTPFDPNYPNPRVQTT- 234 (273)
T ss_dssp ------TTHHHCSTTEEEE--S--GGGGGTT-TTS-HCCHHCTCCCTCCCCS-B------SSEEGCGT-TTSS-BECS--
T ss_pred ----CCCcccccCccHHHHHHhhhhhhcccccCCCCCCcceeeccchhcCcCCcccCChhcccccccccCCCCCCCCCc-
Confidence 688899999999888765554442111 111111122 2224443332111111 01112233
Q ss_pred HHHHHHHHHHHHcCccccccCCC
Q 014963 281 EYIIHFSLWAISKAPLLLGCDVR 303 (415)
Q Consensus 281 E~r~~~~~~a~~gspL~is~Dl~ 303 (415)
.-+++++..++-|||..-+|.+
T Consensus 235 -~ahQLAl~Vv~~Splq~~aD~P 256 (273)
T PF10566_consen 235 -RAHQLALYVVFESPLQMLADSP 256 (273)
T ss_dssp -HHHHHHHHHHS--SEEEE-S-H
T ss_pred -HHHHHHHHHHHHHHHHHHhcCH
Confidence 4679999999999999988854
No 17
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.45 E-value=4.3e-12 Score=125.29 Aligned_cols=163 Identities=19% Similarity=0.307 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc-
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT- 152 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~- 152 (415)
..|++.+++.++.+++.|++ ++.|+||++|+.. ...|+|+.|+++||+ ++.+++.+|++|+|+++|+.|....
T Consensus 20 y~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCC---eeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 48999999999999886664 8999999999954 223599999999998 9999999999999999999985310
Q ss_pred ---------------------------------ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCC--------CCCc
Q 014963 153 ---------------------------------CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTD--------GSKP 191 (415)
Q Consensus 153 ---------------------------------c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~--------~~~~ 191 (415)
.+-++|.+++|+...++.+.++|||++|+|++... +...
T Consensus 94 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~ 173 (308)
T cd06593 94 SPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDG 173 (308)
T ss_pred chhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCc
Confidence 00146778899988888999999999999998531 1111
Q ss_pred ---cchHH-----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHH
Q 014963 192 ---MDRYP-----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRAD 250 (415)
Q Consensus 192 ---~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~ 250 (415)
...|. .+.+++++. .|+++++-+.+.+. ..|+-.| +.|...+|+.+...+.
T Consensus 174 ~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~ 235 (308)
T cd06593 174 EKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLR 235 (308)
T ss_pred ceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHH
Confidence 11222 344455443 24666654332211 2455444 7899999998766554
No 18
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.32 E-value=1.6e-10 Score=111.77 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=116.8
Q ss_pred CCCCceEE--ecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCe--eecCCCCCCcHHHHHH
Q 014963 58 GKSPPMGW--NSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL--QAKNATFPSGIKALAD 133 (415)
Q Consensus 58 ~~~pp~GW--nsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~--~~~~~~FP~Gl~~l~~ 133 (415)
++.||. | -.|...+...+++.+++.++.+.+.+++ ++.|.||++|+.. .+++ +.|+++||+ ++.+++
T Consensus 3 p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~ 73 (265)
T cd06589 3 PALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMID 73 (265)
T ss_pred CCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC---ccEEEECcccccC----CceeeeecChhhCCC-HHHHHH
Confidence 455666 3 2444444467999999999999997765 8999999999976 5666 999999999 999999
Q ss_pred HHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHH-HHcCCcEEEeecCCCCCC-------------Cc---cchHH
Q 014963 134 YVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTF-ALWGVDYLKYDNCYTDGS-------------KP---MDRYP 196 (415)
Q Consensus 134 ~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~-~~wGvdyiK~D~~~~~~~-------------~~---~~~y~ 196 (415)
++|++|+|+.+|+.|.. ++++.+.++.+ .+.|||++|+|++..... .. ...|.
T Consensus 74 ~l~~~g~~~~~~~~P~v----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~ 143 (265)
T cd06589 74 ELHDNGVKLVLWIDPYI----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYP 143 (265)
T ss_pred HHHHCCCEEEEEeChhH----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhH
Confidence 99999999999999653 77776666665 899999999999754211 00 11222
Q ss_pred -----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHH
Q 014963 197 -----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADA 251 (415)
Q Consensus 197 -----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~ 251 (415)
...+++++. .++++++-+.+.+. ..|+ .--+.|....|+.+...+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs------qry~--~~W~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 144 LLYAEATYEALRKNSKNKRPFILSRSGYAGS------QRYA--GMWSGDNTSTWGYLRSQIPA 198 (265)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------cCcC--ceeCCcccCCHHHHHHHHHH
Confidence 234455443 34565554432211 2342 22356888999987666543
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.16 E-value=1.4e-09 Score=107.83 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc-
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT- 152 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~- 152 (415)
+.+++.|++.++.+.+.+++ ++.|.||.+|+.......+.+..|+++||+ .+.|++++|++|+|+.+|+.|....
T Consensus 25 ~~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 25 PDAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred ccHHHHHHHHHHHHHHcCCC---eeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 46799999999999887765 899999999987422234568899999998 9999999999999999999985310
Q ss_pred -----------------c-----------------cCCCCChhHHHHHHH-HHHHHcCCcEEEeecCCCC----------
Q 014963 153 -----------------C-----------------SKQMPGSLGYEEQDA-KTFALWGVDYLKYDNCYTD---------- 187 (415)
Q Consensus 153 -----------------c-----------------~~~~pg~~~~~~~~~-~~~~~wGvdyiK~D~~~~~---------- 187 (415)
. +-++|.+++++.+.+ +.+.+.|||++|+|++...
T Consensus 101 ~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~ 180 (317)
T cd06599 101 HPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDG 180 (317)
T ss_pred CHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecC
Confidence 0 014677888887766 6678999999999998542
Q ss_pred -CCC-----ccchHH-----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHH
Q 014963 188 -GSK-----PMDRYP-----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRAD 250 (415)
Q Consensus 188 -~~~-----~~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~ 250 (415)
+.. ....|. ...+++++. .+++++.-+.+. .- ..|+. --+.|+...|+.+...+.
T Consensus 181 ~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~--G~----qry~~--~WsGD~~s~W~~L~~~i~ 249 (317)
T cd06599 181 FGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFA--GI----QRYAQ--TWSGDNRTSWKTLRYNIA 249 (317)
T ss_pred CCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcc--cc----cCCcC--eeCCCcccCHHHHHHHHH
Confidence 000 011222 244455443 345666433221 11 23422 236799999998766554
No 20
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.10 E-value=3.7e-09 Score=114.07 Aligned_cols=181 Identities=21% Similarity=0.298 Sum_probs=125.4
Q ss_pred CCCCCCCce---E-EecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHH
Q 014963 55 NGLGKSPPM---G-WNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 55 ~~~~~~pp~---G-WnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~ 130 (415)
.|.++.||. | |.|.. ++.+.+|+.+++.++.+.+.+++ ++.|.+|++|+.. ...++++.|+++||+ .+.
T Consensus 257 TGrp~lpP~WalG~w~s~~-~~~~~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~--~~~~~f~wd~~~FPd-p~~ 329 (665)
T PRK10658 257 TGRPALPPAWSFGLWLTTS-FTTNYDEATVNSFIDGMAERDLP---LHVFHFDCFWMKE--FQWCDFEWDPRTFPD-PEG 329 (665)
T ss_pred hCCCCCCchhhhheeeecc-cccCCCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcC--CceeeeEEChhhCCC-HHH
Confidence 344555664 2 33332 44457899999999999887765 7999999999864 235689999999998 999
Q ss_pred HHHHHHHcCCeEEEEeeCCcc--------------cc--------------------cCCCCChhHHHHHHHHHHHHcCC
Q 014963 131 LADYVHSKGLKLGMYSSAGYY--------------TC--------------------SKQMPGSLGYEEQDAKTFALWGV 176 (415)
Q Consensus 131 l~~~i~~~Glk~Giw~~pg~~--------------~c--------------------~~~~pg~~~~~~~~~~~~~~wGv 176 (415)
+++++|++|+|+.+|++|... .| +.++|.+++|+.+.++.+.+.||
T Consensus 330 mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gv 409 (665)
T PRK10658 330 MLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGV 409 (665)
T ss_pred HHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998631 00 12468899999888888999999
Q ss_pred cEEEeecCCC--------CCCCc---cchHH-----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCC
Q 014963 177 DYLKYDNCYT--------DGSKP---MDRYP-----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGD 237 (415)
Q Consensus 177 dyiK~D~~~~--------~~~~~---~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D 237 (415)
|.+|.|+... ++.++ ...|. ...+++++. .+++++.-|.+.+. .+|+-. -+.|
T Consensus 410 dgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGs------Qry~~~--WsGD 481 (665)
T PRK10658 410 DCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGG------QQFPVH--WGGD 481 (665)
T ss_pred cEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCC------CCCCCE--ECCC
Confidence 9999998642 11111 11222 344455542 35666664443211 244422 3579
Q ss_pred CCCchhhHHHHHH
Q 014963 238 ITDTFESVMSRAD 250 (415)
Q Consensus 238 ~~~~w~~~~~~~~ 250 (415)
+...|+.+...+.
T Consensus 482 ~~stw~~l~~si~ 494 (665)
T PRK10658 482 CYSNYESMAESLR 494 (665)
T ss_pred CCCCHHHHHHHHH
Confidence 9999998876554
No 21
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.09 E-value=3.7e-09 Score=104.88 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCC--CCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVR--DENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~--d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~ 152 (415)
-+++.+++.++.+.+.+++ ++.|+||.+|+.... ...|+++.|+++||+ .+.+++++|++|+|+.+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCcccC
Confidence 4799999999999887765 899999999987432 236899999999998 9999999999999999999985310
Q ss_pred ---------------c--------------------cCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCC--------
Q 014963 153 ---------------C--------------------SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGS-------- 189 (415)
Q Consensus 153 ---------------c--------------------~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~-------- 189 (415)
+ .-++|.+++++.+.++.+.+.|||++|.|++.....
T Consensus 97 ~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~ 176 (317)
T cd06598 97 NSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHHK 176 (317)
T ss_pred CchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccCC
Confidence 0 114677889998888888999999999999864210
Q ss_pred -Cc---cchHH-----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHH
Q 014963 190 -KP---MDRYP-----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADA 251 (415)
Q Consensus 190 -~~---~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~ 251 (415)
.. ...|. ...+++++. .++++++-+.+.+ - .+|+.+. -+.|....|+.+...+..
T Consensus 177 g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G--s----qry~~~~-WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 177 GKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG--S----QRYGVIP-WSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred CcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc--c----ccCcCCc-cCCCCcCCHHHHHHHHHH
Confidence 01 11232 234444442 3456664333211 1 2343221 246999999987766553
No 22
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.09 E-value=1.3e-09 Score=112.72 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
-|++.+++.++.+.+.++. ++.++||++|+.. .+++..|+++||+ ++.+++.+|++|+|+++|+.|......
T Consensus 40 ~~~~~v~~~i~~~~~~~iP---~d~~~iD~~~~~~----~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIP---LDVIWIDDDYQDG----YGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp TSHHHHHHHHHHHHHTT-----EEEEEE-GGGSBT----TBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CCHHHHHHHHHHHHHcCCC---ccceecccccccc----ccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 5699999999999886664 8999999999975 6799999999997 999999999999999999998532110
Q ss_pred -------------------------------------CCCCChhHHHHHHHHHHHHc-CCcEEEeecCCCCC-------C
Q 014963 155 -------------------------------------KQMPGSLGYEEQDAKTFALW-GVDYLKYDNCYTDG-------S 189 (415)
Q Consensus 155 -------------------------------------~~~pg~~~~~~~~~~~~~~w-GvdyiK~D~~~~~~-------~ 189 (415)
-++|.+.+|+...++.+.+. |||++|.|++.... .
T Consensus 112 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~ 191 (441)
T PF01055_consen 112 PDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLP 191 (441)
T ss_dssp TB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBC
T ss_pred CcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCc
Confidence 12456788887777777766 99999999965432 0
Q ss_pred ------C------ccchHH-----HHHHHHHH---cCCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHH
Q 014963 190 ------K------PMDRYP-----IMTRALMK---AGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRA 249 (415)
Q Consensus 190 ------~------~~~~y~-----~~~~al~~---~g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~ 249 (415)
. ....|. ...+++++ ..++++++-+.+.+ ...|+.. -+.|....|+.+...+
T Consensus 192 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~--w~GD~~s~w~~L~~~i 263 (441)
T PF01055_consen 192 EDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGH--WSGDNSSSWDGLRSSI 263 (441)
T ss_dssp TTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEE--EECSSBSSHHHHHHHH
T ss_pred ccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCcccee--ecccccccHHHHHHHH
Confidence 0 012333 23444444 34566665433221 1245555 3679999999887665
Q ss_pred HH
Q 014963 250 DA 251 (415)
Q Consensus 250 ~~ 251 (415)
..
T Consensus 264 ~~ 265 (441)
T PF01055_consen 264 PA 265 (441)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.08 E-value=6.9e-09 Score=103.88 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc--
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT-- 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~-- 152 (415)
-|++.+++.++.+.+.+++ ++.|.||.+|+.. .+.+..|+++||+ .+.+++.+|++|+|+.+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~~ 92 (339)
T cd06604 21 YPEEEVREIADEFRERDIP---CDAIYLDIDYMDG----YRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVDP 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECchhhCC----CCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCCC
Confidence 5899999999999887775 8999999999964 7889999999998 9999999999999999999885311
Q ss_pred --------------------------c--------cCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 153 --------------------------C--------SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 153 --------------------------c--------~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
| +-++|.+.+|+.+..+.+.+.|||++|+|++.
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~E 159 (339)
T cd06604 93 GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNE 159 (339)
T ss_pred CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCC
Confidence 0 11367788888888888889999999999875
No 24
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.08 E-value=7.9e-09 Score=101.37 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC-----CCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCC
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-----RDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-----~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
.|+++|++.++.+.+.+++ ++.|+||..|+... .+..++++.|+++||+ .+.+++++|++|+|+.+|+.|.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCC
Confidence 4899999999999997775 89999999998642 2457899999999998 9999999999999999999986
Q ss_pred cc--c-----------------------ccCCCCChhHHH-HHHHHHHHHcCCcEEEeecCCCCC-----CCccchHH-H
Q 014963 150 YY--T-----------------------CSKQMPGSLGYE-EQDAKTFALWGVDYLKYDNCYTDG-----SKPMDRYP-I 197 (415)
Q Consensus 150 ~~--~-----------------------c~~~~pg~~~~~-~~~~~~~~~wGvdyiK~D~~~~~~-----~~~~~~y~-~ 197 (415)
.. . ...++|.+..++ +...+.+.+.|||++|.|++.... ..+...+. .
T Consensus 98 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~ 177 (292)
T cd06595 98 DGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHV 177 (292)
T ss_pred cccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHH
Confidence 31 0 012356666644 666677889999999999875321 11111000 0
Q ss_pred HHHHHH-HcCCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHH
Q 014963 198 MTRALM-KAGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRA 249 (415)
Q Consensus 198 ~~~al~-~~g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~ 249 (415)
..+... ..+|+++++=+.+. .- .+|+-.| +.|+...|+.+...+
T Consensus 178 ~y~~~~~~~~r~f~lsRs~~~--G~----qry~~~W--sGD~~s~W~~l~~~i 222 (292)
T cd06595 178 HYLDSARNGRRPLIFSRWAGL--GS----HRYPIGF--SGDTIISWASLAFQP 222 (292)
T ss_pred HHHHhhccCCCcEEEEeeccc--CC----CcCCCcc--CCCcccCHHHHHHHH
Confidence 111111 23567777543321 11 3566556 789999999876544
No 25
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.04 E-value=1.6e-08 Score=100.73 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcc---
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYY--- 151 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~--- 151 (415)
-|++++++.++.+.+.++. ++.|.||..|+.. .++++.|+++||+ .+.+++++|++|+|..+|+.|...
T Consensus 21 ~~~~ev~~v~~~~r~~~IP---~D~i~lDidy~~~----~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~ 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIP---LDGLHVDVDFQDN----YRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGG 92 (332)
T ss_pred CCHHHHHHHHHHHHHcCCC---CceEEEcCchhcC----CCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCc
Confidence 4899999999999997765 8999999999864 7899999999999 999999999999999999999653
Q ss_pred -ccc------CCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 152 -TCS------KQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 152 -~c~------~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
++. .++|.+++|....++.+.+.|||+++.|.+.
T Consensus 93 ~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnE 133 (332)
T cd06601 93 GLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTT 133 (332)
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCC
Confidence 221 2468889998888888889999999999764
No 26
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.00 E-value=2.4e-08 Score=99.14 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc--
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT-- 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~-- 152 (415)
-|++++++.++.+.+.+++ ++.|.||.+|++. .+++..|+++||+ .+.+++++|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~~ 92 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMDS----YRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVDQ 92 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---cceEEEChhhhCC----CCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 4899999999999887665 8999999999864 6889999999998 9999999999999999999886310
Q ss_pred ----------------------------cc------CCCCChhHHHHHHHHHHH-HcCCcEEEeecCCCCCCC-ccchHH
Q 014963 153 ----------------------------CS------KQMPGSLGYEEQDAKTFA-LWGVDYLKYDNCYTDGSK-PMDRYP 196 (415)
Q Consensus 153 ----------------------------c~------~~~pg~~~~~~~~~~~~~-~wGvdyiK~D~~~~~~~~-~~~~y~ 196 (415)
++ -++|.+.+++.+.++.+. +.|||++|.|++...... ....|.
T Consensus 93 ~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~ 172 (317)
T cd06600 93 NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYG 172 (317)
T ss_pred CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhh
Confidence 00 136778888877777764 999999999998653211 111232
Q ss_pred -----HHHHHHHH---cCCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHH
Q 014963 197 -----IMTRALMK---AGRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADA 251 (415)
Q Consensus 197 -----~~~~al~~---~g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~ 251 (415)
...+++++ ..++++++-+.+.+. ..|+- --+.|....|+.+...+..
T Consensus 173 ~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~--~W~GD~~s~W~~L~~~i~~ 227 (317)
T cd06600 173 LYEAMATAEGFRTSHPRNRIFILTRSGFAGS------QKYAA--IWTGDNTASWDDLKLSIPL 227 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecccccc------CCccc--eECCcccccHHHHHHHHHH
Confidence 23344443 245677765443221 23442 2466889999987655543
No 27
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=98.99 E-value=3.1e-08 Score=98.37 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccc-
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTC- 153 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c- 153 (415)
-+++.+++.++.+.+.+++ ++.|+||..|+.. ...++++.|+++||+ ++.+++++|++|+|+-+|+.|.....
T Consensus 21 ~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~--~~~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIP---LDVIVQDWFYWPK--QGWGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPET 94 (319)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEechhhcC--CCceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCCC
Confidence 4899999999999887664 8999999888764 112499999999999 99999999999999999998864210
Q ss_pred --------------------------------cCCCCChhHHHHH-HHHHHHHcCCcEEEeecCCCCCC-----------
Q 014963 154 --------------------------------SKQMPGSLGYEEQ-DAKTFALWGVDYLKYDNCYTDGS----------- 189 (415)
Q Consensus 154 --------------------------------~~~~pg~~~~~~~-~~~~~~~wGvdyiK~D~~~~~~~----------- 189 (415)
..++|.+++++.. ..+.+.+.|||++|+|++.....
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~ 174 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYRY 174 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCccc
Confidence 0135667777644 44557899999999999853210
Q ss_pred ---Cc---cchHH-----HHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHHH
Q 014963 190 ---KP---MDRYP-----IMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRADA 251 (415)
Q Consensus 190 ---~~---~~~y~-----~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~ 251 (415)
.. ...|. ...+++++. .++++++-+.+.+. .+|+.+.. +.|....|+.+...+..
T Consensus 175 ~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gs------qry~~~~W-~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 175 HLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGS------QRYGALVW-SGDIDSSWETLRRQIAA 243 (319)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEecccccc------ccccCcee-CCCccccHHHHHHHHHH
Confidence 00 11222 233444444 35666653322111 24543222 36889999987766543
No 28
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.97 E-value=9.3e-08 Score=95.73 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcH--HHHHHHHHHcCCeEEEEeeCCccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGI--KALADYVHSKGLKLGMYSSAGYYT 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl--~~l~~~i~~~Glk~Giw~~pg~~~ 152 (415)
-+++.+++.++.+.+.+++ ++.|.||.+|+.. .++|+.|+++||+ . +.+++++|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~ 92 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISA 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECcccccC----ccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 4799999999999997775 8999999999875 7899999999999 7 999999999999999999885321
Q ss_pred -------------------c--------------------cCCCCChhHHHHHHHHH-HHHcCCcEEEeecCCCCCC-Cc
Q 014963 153 -------------------C--------------------SKQMPGSLGYEEQDAKT-FALWGVDYLKYDNCYTDGS-KP 191 (415)
Q Consensus 153 -------------------c--------------------~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~~~~~~-~~ 191 (415)
| .-++|.+.+|+...++. +.+.|||++|.|++..... ..
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 172 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDV 172 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhh
Confidence 0 01356677888777776 4668999999999765321 11
Q ss_pred cchHH-----HHHHHHHH-c-CCCEEEEecCCCCCCcCcccccccceEeecCCCCCchhhHHHHHH
Q 014963 192 MDRYP-----IMTRALMK-A-GRPIYYSLCEWGDMHPALWGFQVGNSWRTTGDITDTFESVMSRAD 250 (415)
Q Consensus 192 ~~~y~-----~~~~al~~-~-g~~i~~~~c~~g~~~p~~~~~~~~~~~R~s~D~~~~w~~~~~~~~ 250 (415)
...|. ...+++++ . .++++++-+.+.+. ..|+- =-+.|....|+.+...+.
T Consensus 173 hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~--~w~GD~~s~W~~L~~~i~ 230 (339)
T cd06602 173 HNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS------GRYAG--HWLGDNASTWEDLRYSII 230 (339)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc------cccce--eECCCccCCHHHHHHHHH
Confidence 11232 23344443 2 24566653332211 23442 246799999998765554
No 29
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.97 E-value=5.6e-08 Score=97.31 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCC------------CC-----CCCeeec-CCCCCCcHHHHHHHH
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVR------------DE-----NGNLQAK-NATFPSGIKALADYV 135 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~------------d~-----~G~~~~~-~~~FP~Gl~~l~~~i 135 (415)
-.|+++|++.++.+.+.+++ ++.|.||+ |+.... |. .+++..+ .++||+ .+.+++++
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p~~mi~~L 94 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-PKGMIDEL 94 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-HHHHHHHH
Confidence 47899999999999887775 89999995 886311 11 2344444 368998 99999999
Q ss_pred HHcCCeEEEEeeCCccc---------------------c---------------------cCCCCChhHHHHHHHHHHH-
Q 014963 136 HSKGLKLGMYSSAGYYT---------------------C---------------------SKQMPGSLGYEEQDAKTFA- 172 (415)
Q Consensus 136 ~~~Glk~Giw~~pg~~~---------------------c---------------------~~~~pg~~~~~~~~~~~~~- 172 (415)
|++|+|+.+|+.|.... + +-++|.+.+|....++.+.
T Consensus 95 h~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 95 HEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred HHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999884311 0 0124567788777777765
Q ss_pred HcCCcEEEeecCCCC---------CCCcc---chH-----HHHHHHHHHcC-CCEEEEecCCCCCCcCcccccccceEee
Q 014963 173 LWGVDYLKYDNCYTD---------GSKPM---DRY-----PIMTRALMKAG-RPIYYSLCEWGDMHPALWGFQVGNSWRT 234 (415)
Q Consensus 173 ~wGvdyiK~D~~~~~---------~~~~~---~~y-----~~~~~al~~~g-~~i~~~~c~~g~~~p~~~~~~~~~~~R~ 234 (415)
+.|||++|+|+.... +.... ..| ..+.+.+++.+ +++++.-+.+.+ - ..|+-.|
T Consensus 175 ~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~G--s----qry~~~W-- 246 (340)
T cd06597 175 ELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTG--A----QAHGIFW-- 246 (340)
T ss_pred hcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCc--c----CCCccee--
Confidence 799999999986431 11111 112 13444455554 455554333211 1 2455333
Q ss_pred cCCCCCchhhHHHHHH
Q 014963 235 TGDITDTFESVMSRAD 250 (415)
Q Consensus 235 s~D~~~~w~~~~~~~~ 250 (415)
+.|....|+.+...+.
T Consensus 247 sGD~~s~W~~L~~~i~ 262 (340)
T cd06597 247 AGDENSTFGAFRWSVF 262 (340)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 7799999998765554
No 30
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.97 E-value=8.9e-08 Score=95.01 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCC-----CeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCc
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENG-----NLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGY 150 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G-----~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 150 (415)
++++|++.++.+.+.+++ ++.|.|| .|+....+..| +|+.|+++||+ .+.|++++|++|+|+-+|+.|..
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCce
Confidence 999999999999887765 8999999 58652112223 57899999999 99999999999999999999863
Q ss_pred cc---------------c--------------------cCCCCChhHHHHHHHHHH-HHcCCcEEEeecCCC
Q 014963 151 YT---------------C--------------------SKQMPGSLGYEEQDAKTF-ALWGVDYLKYDNCYT 186 (415)
Q Consensus 151 ~~---------------c--------------------~~~~pg~~~~~~~~~~~~-~~wGvdyiK~D~~~~ 186 (415)
.. + .-++|.+.+++.+.++.+ .+.|||++|.|+...
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 10 0 013577888886666654 889999999998643
No 31
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.80 E-value=8.6e-08 Score=104.76 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=124.6
Q ss_pred cCCCCCCCc---eEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCC-ccccCCCCCCCeeecCCCCCCcHH
Q 014963 54 ANGLGKSPP---MGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDC-WGEQVRDENGNLQAKNATFPSGIK 129 (415)
Q Consensus 54 ~~~~~~~pp---~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdG-W~~~~~d~~G~~~~~~~~FP~Gl~ 129 (415)
--|.++-|| +| +.|-.....-+|+.+++.++.+.+..+ .++.|++|.. |.+ ..+.|+.|+.+||+ .+
T Consensus 254 lTGkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~~I---P~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk 324 (772)
T COG1501 254 LTGKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRERDI---PLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PK 324 (772)
T ss_pred hhCCCCCCCceecC-CCceeccccccHHHHHHHHhhcccccC---cceEEEEeehhhhc----cccceEECcccCCC-HH
Confidence 344445555 46 233334445789999999999977554 4899999986 775 47899999999999 99
Q ss_pred HHHHHHHHcCCeEEEEeeCCcc--------------cc--------------------cCCCCChhHHHH-HHHHHHHHc
Q 014963 130 ALADYVHSKGLKLGMYSSAGYY--------------TC--------------------SKQMPGSLGYEE-QDAKTFALW 174 (415)
Q Consensus 130 ~l~~~i~~~Glk~Giw~~pg~~--------------~c--------------------~~~~pg~~~~~~-~~~~~~~~w 174 (415)
.|++++|++|+|+-+|++|... .| ..++|.+++|+. ...+.+.+.
T Consensus 325 ~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~ 404 (772)
T COG1501 325 QMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDL 404 (772)
T ss_pred HHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhc
Confidence 9999999999999999999531 11 124688999998 566779999
Q ss_pred CCcEEEeecCCCCC---------CCc---cch-----HHHHHHHHHHc---CCCEEEEecCCCCCCcCcccccccceEee
Q 014963 175 GVDYLKYDNCYTDG---------SKP---MDR-----YPIMTRALMKA---GRPIYYSLCEWGDMHPALWGFQVGNSWRT 234 (415)
Q Consensus 175 GvdyiK~D~~~~~~---------~~~---~~~-----y~~~~~al~~~---g~~i~~~~c~~g~~~p~~~~~~~~~~~R~ 234 (415)
||+.+|.|++...- .+. ... .....+++++. .++++++-|.+.+. ..++-.|
T Consensus 405 Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W-- 476 (772)
T COG1501 405 GVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGS------QRYAAHW-- 476 (772)
T ss_pred CccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccc------eecccee--
Confidence 99999999985521 111 111 22456666655 46777765443221 1222222
Q ss_pred cCCCCCchhhHHHHHH
Q 014963 235 TGDITDTFESVMSRAD 250 (415)
Q Consensus 235 s~D~~~~w~~~~~~~~ 250 (415)
+.|+...|+++...+.
T Consensus 477 sGD~~s~wd~l~~si~ 492 (772)
T COG1501 477 SGDNRSSWDSLRESIP 492 (772)
T ss_pred CCccccchHHHHhhHH
Confidence 6799999998865544
No 32
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.79 E-value=7.1e-07 Score=89.41 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc--
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT-- 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~-- 152 (415)
-|++.+++.++.+.+.+++ ++.|.||..|+.. .++++.|+++||+ .+.+++++|++|+|+-+|+.|....
T Consensus 21 ~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~~~ 92 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTDG----KRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKRDD 92 (339)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEChHHhCC----CCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceecCC
Confidence 5899999999999997765 8999999999764 6889999999998 9999999999999999999885310
Q ss_pred -------------------------------c---cCCCCChhHHHHHHHHHHH---HcCCcEEEeecCC
Q 014963 153 -------------------------------C---SKQMPGSLGYEEQDAKTFA---LWGVDYLKYDNCY 185 (415)
Q Consensus 153 -------------------------------c---~~~~pg~~~~~~~~~~~~~---~wGvdyiK~D~~~ 185 (415)
| +-++|++.+++.+.++.+. +.|++++++|.+.
T Consensus 93 ~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 93 GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 0 0146888888877777654 4799999999864
No 33
>PRK10426 alpha-glucosidase; Provisional
Probab=98.66 E-value=1.2e-06 Score=94.61 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=91.5
Q ss_pred cCCCCCCCceEEec---ccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCC-----CCCeeecCCCCC
Q 014963 54 ANGLGKSPPMGWNS---WNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDE-----NGNLQAKNATFP 125 (415)
Q Consensus 54 ~~~~~~~pp~GWns---W~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~-----~G~~~~~~~~FP 125 (415)
-.|.++.||. |.- |..+ .-+++.+++.++.+.+.+++ ++.|.|| .|+...... .++|+.|+++||
T Consensus 197 ltGr~p~~P~-Wal~G~~~g~--~~~~~~v~~v~~~~r~~~IP---~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FP 269 (635)
T PRK10426 197 LFGRQPELPD-WAYDGVTLGI--QGGTEVVQKKLDTMRNAGVK---VNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYP 269 (635)
T ss_pred hhCCCCCCCh-hhccCccccc--cCCHHHHHHHHHHHHHcCCC---eeEEEEe-cccccccccccccccccceEChhhCC
Confidence 3455566665 432 2122 23578899999999887765 7899998 598643222 246789999999
Q ss_pred CcHHHHHHHHHHcCCeEEEEeeCCcc--------------c-----------------cc---CCCCChhHHHHHHH-HH
Q 014963 126 SGIKALADYVHSKGLKLGMYSSAGYY--------------T-----------------CS---KQMPGSLGYEEQDA-KT 170 (415)
Q Consensus 126 ~Gl~~l~~~i~~~Glk~Giw~~pg~~--------------~-----------------c~---~~~pg~~~~~~~~~-~~ 170 (415)
+ .+.+++++|++|+|+-+|++|... . |. -++|.+++|+.+.+ +.
T Consensus 270 d-p~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~ 348 (635)
T PRK10426 270 Q-LDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKN 348 (635)
T ss_pred C-HHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHH
Confidence 8 999999999999999999999531 0 10 24677889987665 46
Q ss_pred HHHcCCcEEEeecCC
Q 014963 171 FALWGVDYLKYDNCY 185 (415)
Q Consensus 171 ~~~wGvdyiK~D~~~ 185 (415)
+.+.|||++|.|+..
T Consensus 349 ~~~~Gvdg~w~D~~E 363 (635)
T PRK10426 349 MIGLGCSGWMADFGE 363 (635)
T ss_pred HhhcCCCEEeeeCCC
Confidence 889999999999865
No 34
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.55 E-value=3.5e-06 Score=93.50 Aligned_cols=120 Identities=23% Similarity=0.189 Sum_probs=93.7
Q ss_pred cCCCCCCCce---E--EecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcH
Q 014963 54 ANGLGKSPPM---G--WNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGI 128 (415)
Q Consensus 54 ~~~~~~~pp~---G--WnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl 128 (415)
--|.++-||. | +|.|.+ -+++.+++.++.+.+.+++ ++.|.+|..|... .+.++.|+++||+ .
T Consensus 176 LTGrp~mpP~WALGy~qSR~~Y----~sq~eV~eva~~fre~~IP---~DvIwlDidYm~g----~~~FTwD~~rFPd-P 243 (978)
T PLN02763 176 AIGTVFMPPKWALGYQQCRWSY----ESAKRVAEIARTFREKKIP---CDVVWMDIDYMDG----FRCFTFDKERFPD-P 243 (978)
T ss_pred HhCCCCCCchHHhheeeccCCC----CCHHHHHHHHHHHHHcCCC---ceEEEEehhhhcC----CCceeECcccCCC-H
Confidence 3455667775 2 233332 4789999999999987665 8999999999753 6789999999998 9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccc----------------c--------------------cCCCCChhHHHHHHHHHHH
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYT----------------C--------------------SKQMPGSLGYEEQDAKTFA 172 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~----------------c--------------------~~~~pg~~~~~~~~~~~~~ 172 (415)
+.|++++|++|+|.-.+++|+... | +.++|.+++|.....+.|.
T Consensus 244 ~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~ 323 (978)
T PLN02763 244 KGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV 323 (978)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh
Confidence 999999999999997777885310 0 0135668888888888888
Q ss_pred HcCCcEEEeecCC
Q 014963 173 LWGVDYLKYDNCY 185 (415)
Q Consensus 173 ~wGvdyiK~D~~~ 185 (415)
+.|||+++.|++.
T Consensus 324 d~GVDG~W~DmnE 336 (978)
T PLN02763 324 SNGVDGIWNDMNE 336 (978)
T ss_pred cCCCcEEEccCCC
Confidence 9999999999864
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00014 Score=78.68 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=91.8
Q ss_pred CCCceEEecccccC--CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHH
Q 014963 59 KSPPMGWNSWNHFW--CDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVH 136 (415)
Q Consensus 59 ~~pp~GWnsW~~~~--~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~ 136 (415)
.-||. |+-|..+. .-.+...+++.++.+.+.|+ +++.+++|.-|++. +++++.|+.+||. ++.+++.||
T Consensus 291 ~m~pY-WslGf~~~RwgY~nls~~~dvv~~~~~agi---Pld~~~~DiDyMd~----ykDFTvd~~~fp~-~~~fv~~Lh 361 (805)
T KOG1065|consen 291 AMPPY-WSLGFQLCRWGYKNLSVVRDVVENYRAAGI---PLDVIVIDIDYMDG----YKDFTVDKVWFPD-LKDFVDDLH 361 (805)
T ss_pred cCCch-hhccceecccccccHHHHHHHHHHHHHcCC---Ccceeeeehhhhhc----ccceeeccccCcc-hHHHHHHHH
Confidence 34444 88887655 35789999999999966443 47899999999976 8999999999998 999999999
Q ss_pred HcCCeEEEEeeCCccc--c----------c-------------------------CCCCChhHHHHHHHHHHH-HcCCcE
Q 014963 137 SKGLKLGMYSSAGYYT--C----------S-------------------------KQMPGSLGYEEQDAKTFA-LWGVDY 178 (415)
Q Consensus 137 ~~Glk~Giw~~pg~~~--c----------~-------------------------~~~pg~~~~~~~~~~~~~-~wGvdy 178 (415)
+.|+|.-++++|+... | . .++|.+..|..+-++.|. +-+||.
T Consensus 362 ~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg 441 (805)
T KOG1065|consen 362 ARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDG 441 (805)
T ss_pred hCCCeEEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccc
Confidence 9999999999986421 1 0 013445666666677775 789999
Q ss_pred EEeecC
Q 014963 179 LKYDNC 184 (415)
Q Consensus 179 iK~D~~ 184 (415)
+++|..
T Consensus 442 ~wiDmn 447 (805)
T KOG1065|consen 442 FWIDMN 447 (805)
T ss_pred eEEECC
Confidence 999974
No 36
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=97.09 E-value=0.42 Score=51.01 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEE
Q 014963 337 VEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLL 411 (415)
Q Consensus 337 ~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l 411 (415)
.-++.+.. +++.+++++|.+++++++++++..+ . +. ...|+.+++.......+.++++|+|++..+|+|
T Consensus 470 v~~f~R~~-~~~~vlVv~N~s~~~~~v~l~~~~~--~-~~--~~~dl~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 470 VLAFLREY-EGERVLCVFNFSRNPQAVELDLSEF--A-GR--VPVELIGGAPFPPVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred EEEEEEEc-CCcEEEEEEeCCCCCEEeecccccc--c-cC--cceecccCCccccccCCcceEEECCceEEEEEe
Confidence 34566665 4567899999999999888877543 1 11 257888877541122335889999999999986
No 37
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.90 E-value=0.032 Score=53.45 Aligned_cols=136 Identities=19% Similarity=0.324 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
-.+..+++.+|..++..++ ..+|+-+||.... . ..|+.++++++++|++.|||+..+
T Consensus 42 ~~~~~a~~~~~~y~~~~~p---lgw~lpndgyg~~------y---------~~l~~~~~~~~~~g~~~glwt~~~----- 98 (261)
T cd06596 42 STTDDARKVADKYKENDMP---LGWMLPNDGYGCG------Y---------ENLKEVVDYLHANGVETGLWTQSG----- 98 (261)
T ss_pred cchhhHHHHHHHHHhcCCC---ceeeccCCCCcch------H---------HHHHHHHHHHHHcCCccccccccc-----
Confidence 3455678888888885554 6788888888753 1 249999999999999999997633
Q ss_pred CCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCC--CCccchHHHHHHHHHH--cCCCEEEEecCCCCCCcCcccccccc
Q 014963 155 KQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDG--SKPMDRYPIMTRALMK--AGRPIYYSLCEWGDMHPALWGFQVGN 230 (415)
Q Consensus 155 ~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~--~~~~~~y~~~~~al~~--~g~~i~~~~c~~g~~~p~~~~~~~~~ 230 (415)
+++..+....-|+.++|+|-.-.+- ...........+.+++ ..|+++++-|.+.+. ..|+-
T Consensus 99 ---------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs------QRy~~ 163 (261)
T cd06596 99 ---------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT------QRYAG 163 (261)
T ss_pred ---------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc------CCCCC
Confidence 3555566778899999999754321 1111112223333333 347788876654322 13332
Q ss_pred eEeecCCCCCchhhHHHHHH
Q 014963 231 SWRTTGDITDTFESVMSRAD 250 (415)
Q Consensus 231 ~~R~s~D~~~~w~~~~~~~~ 250 (415)
. -+.|....|+.+...+.
T Consensus 164 ~--WsGD~~stWe~Lr~sI~ 181 (261)
T cd06596 164 I--WTGDQSGSWEYIRFHIP 181 (261)
T ss_pred c--cCCCCcCcHHHHHHHHH
Confidence 2 36799999998765554
No 38
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.23 E-value=1.4 Score=47.63 Aligned_cols=134 Identities=12% Similarity=0.083 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee-----ecCCCCC--CcHHHHHHHHHHcCCeEEEEeeC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ-----AKNATFP--SGIKALADYVHSKGLKLGMYSSA 148 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~-----~~~~~FP--~Gl~~l~~~i~~~Glk~Giw~~p 148 (415)
+-+.|.+.+|.| +++|++.|.|===.... ...|++. +|+ .|- ..++.|++.+|++|||+-|=+-+
T Consensus 177 Dl~GI~~kLdYL-----~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 177 DLDGISEKLPYL-----KKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEeCCcccCC--CCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 568889999998 77888887764433332 2244443 332 332 25999999999999997642111
Q ss_pred C-------------------------------------ccccc----------CCCCChhHHHH----HHHHH-HHH-cC
Q 014963 149 G-------------------------------------YYTCS----------KQMPGSLGYEE----QDAKT-FAL-WG 175 (415)
Q Consensus 149 g-------------------------------------~~~c~----------~~~pg~~~~~~----~~~~~-~~~-wG 175 (415)
+ .+.|- ..+|.+++++. .+++. +++ .|
T Consensus 249 NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~g 328 (598)
T PRK10785 249 NHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYN 328 (598)
T ss_pred CcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCC
Confidence 0 00010 01356667764 25555 444 79
Q ss_pred CcEEEeecCCCCCC-----CccchHHHHHHHHHHcCCCEEEEecCCC
Q 014963 176 VDYLKYDNCYTDGS-----KPMDRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 176 vdyiK~D~~~~~~~-----~~~~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
||++.+|....-.. ...+-.+++.+++++..++.++-+=.|.
T Consensus 329 iDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 329 IDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred CcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 99999998643211 1123445688888888888776543343
No 39
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=96.12 E-value=1.6 Score=45.82 Aligned_cols=53 Identities=11% Similarity=-0.042 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHHHH-cCCcEEEeecCCCCCCCccchHHHHHHHHHHcC-CCEEEEe
Q 014963 158 PGSLGYEEQDAKTFAL-WGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAG-RPIYYSL 213 (415)
Q Consensus 158 pg~~~~~~~~~~~~~~-wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g-~~i~~~~ 213 (415)
|.+++++...++.+.+ .|||++.+|....-. .+...++.+++++.. +++++-+
T Consensus 208 p~V~~~l~~~~~~w~~~~giDGfRlDavk~v~---~~f~~~~~~~~~~~~~~~~~~vG 262 (479)
T PRK09441 208 PEVREELKYWAKWYMETTGFDGFRLDAVKHID---AWFIKEWIEHVREVAGKDLFIVG 262 (479)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 5567777777887765 999999999876532 234456777777554 5654443
No 40
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=96.10 E-value=0.049 Score=45.01 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=46.2
Q ss_pred eEEEEEcC-CCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcc--------cc-----cccCceEEEEECC
Q 014963 338 EIWTAPLS-GYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKT--------LE-----TPLAGNLSANLDP 403 (415)
Q Consensus 338 ~vw~~~l~-~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~--------l~-----~~~~~~l~~~l~p 403 (415)
.+.+|... +++|||+..|-.+ +++++|+|+.|+- +..|.+.-+-++.+ +. -..++.++++|.|
T Consensus 17 vviARr~~~G~~Wyvg~in~~~-~r~i~l~L~FL~~--g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~l~~ 93 (103)
T PF14509_consen 17 VVIARRKRDGDDWYVGGINGED-ARTITLPLSFLDK--GKKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTITLAP 93 (103)
T ss_dssp EEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-T--T--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEEE-T
T ss_pred EEEEEEcCCCCCEEEEEeeCCC-ceEEEEECcccCC--CCcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEEEeC
Confidence 56677753 5799999999774 4559999998863 33567665545441 10 1235789999999
Q ss_pred CcEEEEEEEe
Q 014963 404 HTCKMYLLQP 413 (415)
Q Consensus 404 h~~~ll~l~p 413 (415)
+|..+++|+|
T Consensus 94 ~GG~vi~~~p 103 (103)
T PF14509_consen 94 GGGFVIRITP 103 (103)
T ss_dssp T-EEEEEEEE
T ss_pred CCcEEEEEEC
Confidence 9999999998
No 41
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.04 E-value=0.16 Score=55.09 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCHHHHHHHH-HHHHHcCCcccCceEEEeCCCccccC-----CCCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEEEEe
Q 014963 75 INEDIVKAAA-DALVSSGLSKLGYEYVNIDDCWGEQV-----RDENGNLQAKNATF--PSGIKALADYVHSKGLKLGMYS 146 (415)
Q Consensus 75 i~e~~i~~~a-d~l~~~gl~~~G~~~~~IDdGW~~~~-----~d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~ 146 (415)
-|.+.+.+.+ +.| +++|++.|.|=-=.+... .+..+.+.++ .+| |..||.|++.+|++||++-|-+
T Consensus 153 g~~~~i~~~l~dyl-----~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 153 LSYRELADQLIPYV-----KELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred CCHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4667777774 777 778998887721111110 1112333444 355 3469999999999999988765
Q ss_pred eCCc----------------c------------c----ccCCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 147 SAGY----------------Y------------T----CSKQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 147 ~pg~----------------~------------~----c~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
-++- + | +...+|.++.|+-..++. +.+.|||++++|..
T Consensus 227 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 227 VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred cccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 4320 0 0 001246688888777776 46899999999974
No 42
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=94.49 E-value=0.047 Score=40.06 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEE
Q 014963 345 SGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYL 410 (415)
Q Consensus 345 ~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~ 410 (415)
.++..|+.++|.++++++++++- ..+|+.+++... +. ++|+|+++++++
T Consensus 9 ~~~~~y~F~~N~s~~~~~v~l~~-----------~~~dll~g~~~~----~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 9 NDGGRYLFLLNFSDEPQTVTLPE-----------SYTDLLTGETVS----GG--LTLPPYGVRVLK 57 (58)
T ss_dssp --ETTEEEEEE-SSS-EE----T-----------T-EEEES-------------SEE-TTEEEEEE
T ss_pred cCCCEEEEEEECCCCCEEEEcCC-----------CceecccCccee----eE--EEECCCEEEEEE
Confidence 34556899999999999988752 378899988652 22 899999999987
No 43
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=93.52 E-value=0.89 Score=45.76 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCCcccCceEEEeC----CCccccCCCCCCCeeecCCCCC-CcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 80 VKAAADALVSSGLSKLGYEYVNID----DCWGEQVRDENGNLQAKNATFP-SGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 80 i~~~ad~l~~~gl~~~G~~~~~ID----dGW~~~~~d~~G~~~~~~~~FP-~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
..+-++.+ +++|.+|+++= ||..-. .....++..-...+- +=+++|++.+|+.|||+|+|+.+. .+-.
T Consensus 93 ~dqW~~~a-----k~aGakY~VlTakHHDGF~LW-~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~ 165 (346)
T PF01120_consen 93 ADQWAKLA-----KDAGAKYVVLTAKHHDGFCLW-PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHH 165 (346)
T ss_dssp HHHHHHHH-----HHTT-SEEEEEEE-TT--BSS---TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCC
T ss_pred HHHHHHHH-----HHcCCCEEEeehhhcCccccC-CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcC
Confidence 34445555 56688888884 233211 001233332211111 127999999999999999999986 3321
Q ss_pred CC--------CCC-------hhHHHH-----HHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 155 KQ--------MPG-------SLGYEE-----QDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 155 ~~--------~pg-------~~~~~~-----~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
.. .++ ...+++ ++-+.+..+.++.|=.|...... .....+..+.+.+++..+++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~-~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 166 PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP-DEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC-CTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc-ccccCHHHHHHHHHHhCCeEEEec
Confidence 10 011 112332 33333455677777777765431 122345678888888899888864
No 44
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=93.18 E-value=0.76 Score=36.74 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=44.1
Q ss_pred eEEEEEcCCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCccc--ccc-----------cCceEEEEECCC
Q 014963 338 EIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTL--ETP-----------LAGNLSANLDPH 404 (415)
Q Consensus 338 ~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l--~~~-----------~~~~l~~~l~ph 404 (415)
-+|.|...++..+|.++|.+++....++. +|++. .-+.+++.+..+. ++. ..+.++++|||.
T Consensus 12 ~af~R~~~~~~~~lvv~Nf~~~~~~~~~~---~~~p~--~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp~~ 86 (95)
T PF02806_consen 12 IAFERKDKGDDRVLVVFNFSPEAVYEDYR---IGVPE--AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLPPY 86 (95)
T ss_dssp EEEEETTTETTEEEEEEESSSS-EEEEEE---ECSSS--SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEESTT
T ss_pred EEEEEcCCCCCEEEEEEECCCcccceeEE---eCCCC--cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEECCC
Confidence 34666532233789999999764444443 35542 2356677666332 111 257889999999
Q ss_pred cEEEEEEE
Q 014963 405 TCKMYLLQ 412 (415)
Q Consensus 405 ~~~ll~l~ 412 (415)
++.+|+++
T Consensus 87 s~~vl~~~ 94 (95)
T PF02806_consen 87 SALVLKLK 94 (95)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEc
Confidence 99999986
No 45
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.18 E-value=0.7 Score=45.85 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeec-----------CCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAK-----------NATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~-----------~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
+++.+.+.++.+ +..+++.++|| --|..|.+..+ ...+...++.|++.+|++|+.+=-
T Consensus 11 ~~~~~~~~~~~i-----~~t~lNavVID------vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 11 SPERLDKLLDLI-----KRTELNAVVID------VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CHHHHHHHHHHH-----HhcCCceEEEE------EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 457788888888 55567889997 22444544321 122223599999999999998776
Q ss_pred EeeCCc---------------------------ccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 145 YSSAGY---------------------------YTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 145 w~~pg~---------------------------~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
++..+. .|..++.+.+.+|.-.+++..++.|||-|-+|++..
T Consensus 80 RIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRF 148 (316)
T PF13200_consen 80 RIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRF 148 (316)
T ss_pred EEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeec
Confidence 664321 122233456788888889999999999999999744
No 46
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=91.30 E-value=2 Score=46.00 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeC--------CCccccCCCCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNID--------DCWGEQVRDENGNLQAKNATF--PSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~ID--------dGW~~~~~d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Gi 144 (415)
=+-+.+.+.++.| +++|++.|.|= .+|-- +......+++ +| ++.+|.|++.+|++||++-|
T Consensus 108 G~~~gi~~~l~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY---~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~Vil 178 (542)
T TIGR02402 108 GTFDAAIEKLPYL-----ADLGITAIELMPVAQFPGTRGWGY---DGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVIL 178 (542)
T ss_pred CCHHHHHHhhHHH-----HHcCCCEEEeCccccCCCCCCCCC---CccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3567777888887 67787776542 12211 1111122221 23 23699999999999999754
Q ss_pred EeeCC-----c---------------cccc----CCCC---ChhHHHHHHHHH-HHHcCCcEEEeecCCCCC-CCccchH
Q 014963 145 YSSAG-----Y---------------YTCS----KQMP---GSLGYEEQDAKT-FALWGVDYLKYDNCYTDG-SKPMDRY 195 (415)
Q Consensus 145 w~~pg-----~---------------~~c~----~~~p---g~~~~~~~~~~~-~~~wGvdyiK~D~~~~~~-~~~~~~y 195 (415)
=+-++ . ..|+ ..+| .++.++-..++. +.+.|||++.+|....-. ....+-.
T Consensus 179 D~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l 258 (542)
T TIGR02402 179 DVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHIL 258 (542)
T ss_pred EEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHH
Confidence 22110 0 0111 1246 677787555555 568999999999754311 1122244
Q ss_pred HHHHHHHHHcCCC
Q 014963 196 PIMTRALMKAGRP 208 (415)
Q Consensus 196 ~~~~~al~~~g~~ 208 (415)
.++.+.+++..++
T Consensus 259 ~~~~~~~~~~~p~ 271 (542)
T TIGR02402 259 EELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHHCCC
Confidence 5677777777666
No 47
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=90.90 E-value=1 Score=35.22 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCcEEEEEEecCCCCeeEEeeccccC-CCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEE
Q 014963 337 VEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDFG-IPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLL 411 (415)
Q Consensus 337 ~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lG-L~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l 411 (415)
.-++.|.. ++..++.+.|-++++++ ++++++. +-+ ..-+.+|+-+|+.+ . .+. +++|+|.++.+|.|
T Consensus 11 vYvYfR~~-~~~tVmVilN~n~~~~~--ldl~ry~E~l~-~~~~~~diltg~~i-~-l~~--~l~l~~~~~~ILel 78 (78)
T PF10438_consen 11 VYVYFRYY-DGKTVMVILNKNDKEQT--LDLKRYAEVLG-GFTSAKDILTGKTI-D-LSK--NLTLPPKSVLILEL 78 (78)
T ss_dssp EEEEEEEE-SSEEEEEEEE-SSS-EE--EEGGGGHHHHT-T--EEEETTT--EE-E--SS--EEEE-TTEEEEEEE
T ss_pred EEEEEEEc-CCCEEEEEEcCCCCCeE--EcHHHHHHhhC-CCcceEECCCCCEE-e-cCC--cEEECCCceEEEEC
Confidence 45677775 66788999999976654 5555441 111 22489999999986 2 333 68999999999976
No 48
>PRK12313 glycogen branching enzyme; Provisional
Probab=90.59 E-value=2.2 Score=46.47 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCHHHHHHH-HHHHHHcCCcccCceEEEeCCCccccCC-----CCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEEEEe
Q 014963 75 INEDIVKAA-ADALVSSGLSKLGYEYVNIDDCWGEQVR-----DENGNLQAKNATF--PSGIKALADYVHSKGLKLGMYS 146 (415)
Q Consensus 75 i~e~~i~~~-ad~l~~~gl~~~G~~~~~IDdGW~~~~~-----d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~ 146 (415)
-|.+.+.+. ++.| +++|++.|.|=-=++.... +..+...+++ +| |+.+|.|++.+|++||++-|=+
T Consensus 167 g~~~~~~~~ll~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 167 LSYRELADELIPYV-----KEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred cCHHHHHHHHHHHH-----HHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 355666665 4777 7788887765322222111 1112223332 34 4579999999999999965422
Q ss_pred eCC--------------c--------------cc----ccCCCCChhHHHHHHHHHH-HHcCCcEEEeecC
Q 014963 147 SAG--------------Y--------------YT----CSKQMPGSLGYEEQDAKTF-ALWGVDYLKYDNC 184 (415)
Q Consensus 147 ~pg--------------~--------------~~----c~~~~pg~~~~~~~~~~~~-~~wGvdyiK~D~~ 184 (415)
-++ . .| +...+|.++.++-..++.+ .+.|||++.+|..
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 110 0 00 0112467788876667764 6789999999964
No 49
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.42 E-value=3.4 Score=42.24 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=67.7
Q ss_pred cccCceEEEeC----CCccccCCCCCCCeeecCCCCC-CcHHHHHHHHHHcCCeEEEEeeCCccccc-------------
Q 014963 93 SKLGYEYVNID----DCWGEQVRDENGNLQAKNATFP-SGIKALADYVHSKGLKLGMYSSAGYYTCS------------- 154 (415)
Q Consensus 93 ~~~G~~~~~ID----dGW~~~~~d~~G~~~~~~~~FP-~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~------------- 154 (415)
+++|.+|+++= ||+.-. .....+|..-..-+- +=+++|++.+|+.|||||+|+.+ ..|-.
T Consensus 91 k~AGakY~vlTaKHHDGF~lw-~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~p~y~~~~~~~~~~ 168 (384)
T smart00812 91 KKAGAKYVVLTAKHHDGFCLW-DSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFNPLYAGPTSSDEDP 168 (384)
T ss_pred HHcCCCeEEeeeeecCCcccc-CCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCCCcccccccccccc
Confidence 56788899884 343221 001233432211110 12899999999999999999986 22210
Q ss_pred CCCCChhHHH----HHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCE---EEE
Q 014963 155 KQMPGSLGYE----EQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPI---YYS 212 (415)
Q Consensus 155 ~~~pg~~~~~----~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i---~~~ 212 (415)
...|...+|+ .++.+.+..+|-+.|=.|....... ......++.+.+++..+++ +++
T Consensus 169 ~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~-~~~~~~~l~~~~~~~qP~~~~vvvn 232 (384)
T smart00812 169 DNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPD-DYWRSKEFLAWLYNLSPVKDTVVVN 232 (384)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCcc-chhcHHHHHHHHHHhCCCCceEEEE
Confidence 0123334554 3444456678889998897543211 1123456777888888875 664
No 50
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.86 E-value=5.7 Score=46.43 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred CCHHHHHHH-HHHHHHcCCcccCceEEEe--------CCCccccCCCCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEE
Q 014963 75 INEDIVKAA-ADALVSSGLSKLGYEYVNI--------DDCWGEQVRDENGNLQAKNATF--PSGIKALADYVHSKGLKLG 143 (415)
Q Consensus 75 i~e~~i~~~-ad~l~~~gl~~~G~~~~~I--------DdGW~~~~~d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~G 143 (415)
.+...+.+. ++.+ +++||+.|.| |..|- .+..+...++ .+| |+.||.|++.+|++||++-
T Consensus 762 ~~~~~l~~~lldYl-----k~LGvt~IeLmPv~e~p~~~swG---Y~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VI 832 (1224)
T PRK14705 762 LGYRELAKELVDYV-----KWLGFTHVEFMPVAEHPFGGSWG---YQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVL 832 (1224)
T ss_pred CchHHHHHHHHHHH-----HHhCCCEEEECccccCCCCCCCC---CCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEE
Confidence 344554444 5766 6778877654 22231 1112333333 344 5689999999999999976
Q ss_pred EEeeCCc----cc---------------c-------------cCCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 144 MYSSAGY----YT---------------C-------------SKQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 144 iw~~pg~----~~---------------c-------------~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
|=+-++- .+ + ...+|.++.|+-..+.. +.+.+||++.+|..
T Consensus 833 LD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 833 LDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred EEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 5222110 00 0 01135577777555555 67899999999974
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.62 E-value=6.3 Score=43.76 Aligned_cols=103 Identities=13% Similarity=0.148 Sum_probs=59.8
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeCCCccccCCCCCC-----CeeecCCCC--CCcHHHHHHHHHHcCCeEEEEee
Q 014963 76 NEDIVKAA-ADALVSSGLSKLGYEYVNIDDCWGEQVRDENG-----NLQAKNATF--PSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 76 ~e~~i~~~-ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G-----~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
+.+.+.+. ++.| +++|++.|.|===.+.......| ...+++ +| |+.||.|++.+|++||++-|=+-
T Consensus 263 ~~~~i~~~l~~yl-----k~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 263 SYRELADQLIPYV-----KEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44555555 3766 77888877653222211111122 222332 33 34699999999999999765221
Q ss_pred CC--------------c--c------------c--c--cCCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 148 AG--------------Y--Y------------T--C--SKQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 148 pg--------------~--~------------~--c--~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
++ . + | | ...+|.++.++-..++. +.+.|||++.+|..
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 11 0 0 0 0 11246677787666666 46899999999964
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=86.57 E-value=3.7 Score=40.71 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC--CCC--------CCCeeecCCCCCCcHHHHHHHHHHcCCeEEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV--RDE--------NGNLQAKNATFPSGIKALADYVHSKGLKLGMY 145 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~--~d~--------~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 145 (415)
+++.+.+.++.| +.+|++.|.++=-+.... ..+ .|....++ -| +=|+.+++..|++||++=-|
T Consensus 17 ~~~~~~~~l~~l-----~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~p-g~-DpL~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 17 SKEQIDEMLDDL-----KSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDP-GF-DPLEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCC-Cc-cHHHHHHHHHHHcCCEEEEE
Confidence 788899999988 455566666653332110 000 01100011 01 12899999999999999989
Q ss_pred eeCCcc-------------c---------------------ccCCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 146 SSAGYY-------------T---------------------CSKQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 146 ~~pg~~-------------~---------------------c~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
+..+.. + ..+.+|++++|+...++- ++.+.||+|-+|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 90 FRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred EEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 853210 0 001257799998777666 46899999999953
No 53
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=1.5 Score=47.42 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=68.2
Q ss_pred chhhhhhhccCCCCCCCceEEecccccCCC---CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecC
Q 014963 45 SERLRRNLLANGLGKSPPMGWNSWNHFWCD---INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKN 121 (415)
Q Consensus 45 ~~~~~~~~~~~~~~~~pp~GWnsW~~~~~~---i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~ 121 (415)
.|..|+-+.=.|..+-||+. |-++-.|. .+|+++++.-+.+.+..+ .|+.+.+|=...+ +.-+++.|+
T Consensus 338 ~Dv~~qyaaLTG~~~LPplF--siGYHQcRWNY~DE~DV~~Vd~~FDehdi---P~DviWLDIEhtd----gKrYFTWDk 408 (915)
T KOG1066|consen 338 SDVFRQYAALTGTTPLPPLF--SIGYHQCRWNYNDEEDVLTVDQGFDEHDI---PYDVIWLDIEHTD----GKRYFTWDK 408 (915)
T ss_pred hHHHHHHHhhcCCCCCCchh--hcchhhccccccchhhhhhhhcCccccCC---ccceEEEeeeecC----CceeEeecc
Confidence 47788888888888888862 11122232 467777776666655433 4888888855543 356789999
Q ss_pred CCCCCcHHHHHHHHHHcCCeEEEEeeC
Q 014963 122 ATFPSGIKALADYVHSKGLKLGMYSSA 148 (415)
Q Consensus 122 ~~FP~Gl~~l~~~i~~~Glk~Giw~~p 148 (415)
.+||+ -+.|.+++.+||=|+=.=++|
T Consensus 409 ~~FP~-P~~Ml~kLa~kgRklV~IvDP 434 (915)
T KOG1066|consen 409 HKFPN-PKDMLKKLASKGRKLVTIVDP 434 (915)
T ss_pred ccCCC-HHHHHHHHHhcCCceEEEeCc
Confidence 99999 999999999999998776776
No 54
>PRK14706 glycogen branching enzyme; Provisional
Probab=85.46 E-value=8.1 Score=42.24 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHcCCeEEEEeeCC--------------cc---cc---------------cCCCCChhHHHHHHHHH-H
Q 014963 125 PSGIKALADYVHSKGLKLGMYSSAG--------------YY---TC---------------SKQMPGSLGYEEQDAKT-F 171 (415)
Q Consensus 125 P~Gl~~l~~~i~~~Glk~Giw~~pg--------------~~---~c---------------~~~~pg~~~~~~~~~~~-~ 171 (415)
|+.+|.|++.+|++|+++-|=+-++ .. .. ...+|.++.|+-..++. +
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~ 295 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWL 295 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 5579999999999999965421110 00 00 01246788888666666 5
Q ss_pred HHcCCcEEEeecC
Q 014963 172 ALWGVDYLKYDNC 184 (415)
Q Consensus 172 ~~wGvdyiK~D~~ 184 (415)
.+.+||++.+|..
T Consensus 296 ~e~~iDG~R~Dav 308 (639)
T PRK14706 296 QDFHVDGLRVDAV 308 (639)
T ss_pred HHhCCCeEEEeee
Confidence 7999999999964
No 55
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.89 E-value=3 Score=45.18 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEe--------CCCccccCCCCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNI--------DDCWGEQVRDENGNLQAKNATF--PSGIKALADYVHSKGLKLGMY 145 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~I--------DdGW~~~~~d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw 145 (415)
+.+...+.++.+ +++||+.|.| |-+|-- +..|..-|. ++| |++||.|||.+|++|+.+=|=
T Consensus 163 ~~e~a~~llpYl-----~elG~T~IELMPv~e~p~~~sWGY---q~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYL-----KELGITHIELMPVAEHPGDRSWGY---QGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHH-----HHhCCCEEEEcccccCCCCCCCCC---Ccceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 445566666666 6777776654 444422 223433343 577 789999999999999876542
Q ss_pred eeCC-----ccccc--------C-------------------CCCChhHHH-HHHHHHHHHcCCcEEEeecCCC
Q 014963 146 SSAG-----YYTCS--------K-------------------QMPGSLGYE-EQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 146 ~~pg-----~~~c~--------~-------------------~~pg~~~~~-~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
.-|+ ...|. . .+++++.|+ +...-.+.+..||.|.+|....
T Consensus 234 ~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 234 WVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred ecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 1121 11110 0 135577776 4444558899999999998643
No 56
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=84.24 E-value=7.9 Score=42.02 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeeC----------------Ccc-------------ccc----CCCCChhHHHHHHHHHH-H
Q 014963 127 GIKALADYVHSKGLKLGMYSSA----------------GYY-------------TCS----KQMPGSLGYEEQDAKTF-A 172 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~p----------------g~~-------------~c~----~~~pg~~~~~~~~~~~~-~ 172 (415)
.+|.|++.+|++||++-|=+-+ ..+ .|. ..+|.++.++...++.+ .
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999996542111 000 011 01466778876666664 5
Q ss_pred HcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 173 LWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 173 ~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
+.|||++.+|..... ..+-..++.+++++..+++++-
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~li 346 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILLY 346 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEEE
Confidence 799999999976432 2234556777787778876654
No 57
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=83.83 E-value=5.7 Score=43.05 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=54.4
Q ss_pred EEEEEcC-CCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccc--cCceEEEEECCCcEEEEEEEeC
Q 014963 339 IWTAPLS-GYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETP--LAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 339 vw~~~l~-~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~--~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
+....+. ++...|.+.|.+.+++.+++.+..+ .+ ..++|+..+... +. ..+.++++|++|+-+-|++.+.
T Consensus 612 a~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~--~~---~~~~dl~~~~~~-~~~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 612 VMVHELPAGKGIQITALNFGADAIAEEICLPGF--AP---GPVVDIIHESVE-GDLTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred EEEEEcCCCCceEEEeeccCCCCeeeEEecccc--CC---CCceeccCCCcc-CCcCCCceeEEEecCcceEEEEeccc
Confidence 4555555 3478899999999999999988755 32 268999999876 33 4568999999999999998764
No 58
>PLN02960 alpha-amylase
Probab=83.72 E-value=13 Score=41.77 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred CHHHHHH-HHHHHHHcCCcccCceEEEeCCCccccCCCCCC-----CeeecCCCC--CCcHHHHHHHHHHcCCeEEEEee
Q 014963 76 NEDIVKA-AADALVSSGLSKLGYEYVNIDDCWGEQVRDENG-----NLQAKNATF--PSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 76 ~e~~i~~-~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G-----~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
|.+.+.+ .++.+ +++||+.|.|=-=-+.....+.| ...++ .+| |+.++.|++.+|++|+++-|=+-
T Consensus 414 tf~~~~e~~LdYL-----k~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHV-----KKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 5566653 37776 77788777652211111011112 22222 233 56799999999999999654221
Q ss_pred -----CC----------c---c-----------c-c---cCCCCChhHHHHHHHHH-HHHcCCcEEEeecCC
Q 014963 148 -----AG----------Y---Y-----------T-C---SKQMPGSLGYEEQDAKT-FALWGVDYLKYDNCY 185 (415)
Q Consensus 148 -----pg----------~---~-----------~-c---~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~~ 185 (415)
+. . + | | ....|.++.|+-..++. +.+.+||++.+|...
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 10 0 0 0 0 01236677887666665 579999999999753
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=82.24 E-value=15 Score=40.73 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=59.1
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeCCCccccC-----CCCCCCeeecCCCC--CCcHHHHHHHHHHcCCeEEEEee
Q 014963 76 NEDIVKAA-ADALVSSGLSKLGYEYVNIDDCWGEQV-----RDENGNLQAKNATF--PSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 76 ~e~~i~~~-ad~l~~~gl~~~G~~~~~IDdGW~~~~-----~d~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
+...+.+. ++.+ +++|++.|.|=-=.+... .+..|...++ .+| |+.+|.|++.+|++|+++-|=+-
T Consensus 267 ~~~~la~~ll~yl-----k~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 267 DWPTLAEQLIPYV-----QQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 44555444 4666 677887775421111110 1112333344 355 34799999999999999765221
Q ss_pred CC--------------c--c------------c--c--cCCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 148 AG--------------Y--Y------------T--C--SKQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 148 pg--------------~--~------------~--c--~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
++ . + | + ...+|.++.++-..++. +.+.|||++.+|..
T Consensus 341 ~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 341 SAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred cccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 11 0 0 0 0 11246677777555565 57899999999964
No 60
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=81.20 E-value=13 Score=33.84 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHc--CCeEEEEeeCCccccc---CCCCC-hhHHHHHHHHHHHHcCCcEEEeecCCCCCCC--ccchHHH
Q 014963 126 SGIKALADYVHSK--GLKLGMYSSAGYYTCS---KQMPG-SLGYEEQDAKTFALWGVDYLKYDNCYTDGSK--PMDRYPI 197 (415)
Q Consensus 126 ~Gl~~l~~~i~~~--Glk~Giw~~pg~~~c~---~~~pg-~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~--~~~~y~~ 197 (415)
......++.++++ |+|..+-+.-...... -..|. ...+.+...+.++++|+|+|=+|+-...... ..+.|..
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ 128 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFIT 128 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHH
Confidence 3466777888887 9997765543211111 01122 2446688888899999999999997764332 3577888
Q ss_pred HHHHHHHcCC--CEEEEec
Q 014963 198 MTRALMKAGR--PIYYSLC 214 (415)
Q Consensus 198 ~~~al~~~g~--~i~~~~c 214 (415)
+.+.|++..+ ...++.+
T Consensus 129 ll~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 129 LLRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHHHHhcccCcEEEEE
Confidence 8888886644 3556543
No 61
>PLN02361 alpha-amylase
Probab=80.76 E-value=13 Score=38.26 Aligned_cols=103 Identities=12% Similarity=0.032 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeec----CCCCC--CcHHHHHHHHHHcCCeEEEEeeC--
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAK----NATFP--SGIKALADYVHSKGLKLGMYSSA-- 148 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~----~~~FP--~Gl~~l~~~i~~~Glk~Giw~~p-- 148 (415)
.+.|.+.++.| +++|++.|.|=--.+.. ...|++..| .++|- ..++.|++.+|++|+|+-+=+-+
T Consensus 28 w~~i~~kl~~l-----~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 28 WRNLEGKVPDL-----AKSGFTSAWLPPPSQSL--APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHH-----HHcCCCEEEeCCCCcCC--CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 46788888887 77788877665443332 124444322 23554 25999999999999996431100
Q ss_pred ----------------Cc--c-------ccc-------------------CCCCChhHHHHHHHHHHHH-cCCcEEEeec
Q 014963 149 ----------------GY--Y-------TCS-------------------KQMPGSLGYEEQDAKTFAL-WGVDYLKYDN 183 (415)
Q Consensus 149 ----------------g~--~-------~c~-------------------~~~pg~~~~~~~~~~~~~~-wGvdyiK~D~ 183 (415)
+. . .|. ..+|.+++++...++.+++ .|||.+.+|+
T Consensus 101 ~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDa 180 (401)
T PLN02361 101 RVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180 (401)
T ss_pred ccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 00 0 010 1245677888888888875 9999999999
Q ss_pred CCC
Q 014963 184 CYT 186 (415)
Q Consensus 184 ~~~ 186 (415)
...
T Consensus 181 vk~ 183 (401)
T PLN02361 181 AKG 183 (401)
T ss_pred ccc
Confidence 865
No 62
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=80.62 E-value=3.5 Score=37.00 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCC-----C----CcHHHHHHHHHHcCCe-
Q 014963 72 WCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----P----SGIKALADYVHSKGLK- 141 (415)
Q Consensus 72 ~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P----~Gl~~l~~~i~~~Glk- 141 (415)
..+.+++...+..+.| ++.|+++++|= |... ++....++++ . +=+..+.+...+.|||
T Consensus 14 ~~~~~~~~W~~~~~~m-----~~~GidtlIlq--~~~~-----~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv 81 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM-----KAIGIDTLILQ--WTGY-----GGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV 81 (166)
T ss_pred hcCCCHHHHHHHHHHH-----HHcCCcEEEEE--Eeec-----CCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE
Confidence 4689999999999999 77788887662 4332 2222222332 2 2267888888999999
Q ss_pred -EEEEeeCC
Q 014963 142 -LGMYSSAG 149 (415)
Q Consensus 142 -~Giw~~pg 149 (415)
+|||+++.
T Consensus 82 ~~Gl~~~~~ 90 (166)
T PF14488_consen 82 FVGLYFDPD 90 (166)
T ss_pred EEeCCCCch
Confidence 77777754
No 63
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=80.37 E-value=11 Score=40.37 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCe-----eecCCCCC--CcHHHHHHHHHHcCCeEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL-----QAKNATFP--SGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~-----~~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 144 (415)
+-+.+.+.++.| +++|++.|.|=--+..... ..|++ .+|+ +|- ..++.|++.+|++|||+-+
T Consensus 31 dl~gi~~~ldyl-----~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 31 DLRGVTQRLDYL-----QKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CHHHHHHhhHHH-----HhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 556777888887 7788888877333322110 12222 2232 332 2599999999999999764
No 64
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=79.24 E-value=14 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=30.8
Q ss_pred EEEcCCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEE
Q 014963 341 TAPLSGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMY 409 (415)
Q Consensus 341 ~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll 409 (415)
.....++...+.++|.++++.++. . .. ..+-+++.... ...+ .++|+||++.++
T Consensus 36 ~~r~~~~~~l~v~~Nls~~~~~~~------~---~~--~~~~l~~s~~~--~~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 36 FRRTGGGERLLVAFNLSDEPVTVP------E---GP--WGEVLFSSEPA--RAGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEEETTEEEEEEEE-SSS-EEEE------T---SC--CEEEEEECSCS--SE----EEEE-TTEEEEE
T ss_pred EEEEcCCceEEEEEecCCCcEEcc------C---CC--CCeEEEcCCCc--cccc--CceECCCEEEEC
Confidence 344346778999999998777766 1 11 23334444332 1222 789999999875
No 65
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=78.52 E-value=12 Score=36.99 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=56.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEeeCCcccc-cCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCC----CccchHHHHHH
Q 014963 126 SGIKALADYVHSKGLKLGMYSSAGYYTC-SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGS----KPMDRYPIMTR 200 (415)
Q Consensus 126 ~Gl~~l~~~i~~~Glk~Giw~~pg~~~c-~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~----~~~~~y~~~~~ 200 (415)
..++.-++.+|++|+|+-|-+.-....- ..+......+.+...+.++++|+|.|=+|+-..... ...+.|..+.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk 139 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALK 139 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHH
Confidence 3578888899999999877654211100 011112345667888889999999999999775322 12356777777
Q ss_pred HHHHc-CCCEEEEe
Q 014963 201 ALMKA-GRPIYYSL 213 (415)
Q Consensus 201 al~~~-g~~i~~~~ 213 (415)
.|++. +++.++..
T Consensus 140 ~lr~~~~~~~~lT~ 153 (312)
T cd02871 140 QLKDHYGPNFILTM 153 (312)
T ss_pred HHHHHcCCCeEEEE
Confidence 77654 45666654
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=78.25 E-value=30 Score=37.06 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCe-----eecCCCCC--CcHHHHHHHHHHcCCeEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNL-----QAKNATFP--SGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~-----~~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 144 (415)
+-..+.+.++.+ +++|++.|.|---+.....+ .|+. .+|+ +|- ..++.|++.+|++|+|+-+
T Consensus 25 ~~~gi~~~l~yl-----~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYL-----KKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHH-----HHcCCCEEEECCcccCCCCC-CCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 566788888887 77888888776555443211 2322 2333 232 2599999999999999765
No 67
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=77.67 E-value=30 Score=40.32 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHcCCeEEEEee--------------CCcc------------cccC----CCCChhHHHHHHHHHH-HHcC
Q 014963 127 GIKALADYVHSKGLKLGMYSS--------------AGYY------------TCSK----QMPGSLGYEEQDAKTF-ALWG 175 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~--------------pg~~------------~c~~----~~pg~~~~~~~~~~~~-~~wG 175 (415)
.||.|++.+|++||++-+=+- |+.+ +|.. .+|.++.++-..++.+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999654111 1111 1211 2456677776556654 6899
Q ss_pred CcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecCC
Q 014963 176 VDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEW 216 (415)
Q Consensus 176 vdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~ 216 (415)
||++.+|....- ..+....+..++++..+++++-+=.|
T Consensus 636 VDGFRfDl~g~~---d~~~~~~~~~~l~~~dP~~~liGE~W 673 (1111)
T TIGR02102 636 VDGFRFDMMGDH---DAASIEIAYKEAKAINPNIIMIGEGW 673 (1111)
T ss_pred CcEEEEeccccC---CHHHHHHHHHHHHHhCcCEEEEEecc
Confidence 999999987531 22344566677777778776653334
No 68
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=77.39 E-value=40 Score=36.25 Aligned_cols=218 Identities=18% Similarity=0.213 Sum_probs=104.1
Q ss_pred CCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCC-----CCCC------
Q 014963 58 GKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNA-----TFPS------ 126 (415)
Q Consensus 58 ~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~-----~FP~------ 126 (415)
.+-|=.||=| .|....+.+...+.++.| +.+.++.++.= -|+.. +..+.+... .|++
T Consensus 100 ~~fPRYGfls--~f~~~~~~~~~~~~i~~L-----~~yHIN~~QFY-DW~~r----H~~Pl~~~~~~~~~~w~D~~~r~i 167 (559)
T PF13199_consen 100 TRFPRYGFLS--DFDKSKSAEDIEAEIDQL-----NRYHINGLQFY-DWMYR----HHKPLPGTNGQPDQTWTDWANRQI 167 (559)
T ss_dssp TSS--EEEE-----GGGGGHHHHHHHHHHH-----HHTT--EEEET-S--SB----TTB-S-SSS-EEE-TT-TTT--EE
T ss_pred ccCCcceEec--CCCCcCCchhHHHHHHHH-----HhhCcCeEEEE-eeccc----cCCcCCCCCCchhhhhhhhcCCEe
Confidence 4566677766 455556888999999998 44555555542 34432 111222111 3433
Q ss_pred ---cHHHHHHHHHHcCCeEEEEeeCCc------------cc------cc--------------------CCCCChhHHH-
Q 014963 127 ---GIKALADYVHSKGLKLGMYSSAGY------------YT------CS--------------------KQMPGSLGYE- 164 (415)
Q Consensus 127 ---Gl~~l~~~i~~~Glk~Giw~~pg~------------~~------c~--------------------~~~pg~~~~~- 164 (415)
=+|..++.+|++|+|...|...-. .| +. +.+|+.+.|+
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~ 247 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYII 247 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHH
Confidence 379999999999999999975310 00 10 0123345565
Q ss_pred HHHHHHHHHcCCcEEEeecCCCC-------CC---CccchHHHHHHHHHHcCC--CEEEEe-cCCCCC-----CcCcccc
Q 014963 165 EQDAKTFALWGVDYLKYDNCYTD-------GS---KPMDRYPIMTRALMKAGR--PIYYSL-CEWGDM-----HPALWGF 226 (415)
Q Consensus 165 ~~~~~~~~~wGvdyiK~D~~~~~-------~~---~~~~~y~~~~~al~~~g~--~i~~~~-c~~g~~-----~p~~~~~ 226 (415)
++..+.++..|||++-+|=.+.. +. +..+.|..+.+++++..+ .+++.- ..+|.. .+.. .
T Consensus 248 ~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d--~ 325 (559)
T PF13199_consen 248 NQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVD--F 325 (559)
T ss_dssp HHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--S--S
T ss_pred HHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccc--e
Confidence 44555578899999999976531 11 225688899999987764 344442 122210 1111 1
Q ss_pred cccceEeecCCCCCchhhHHHHHHHhhhhh-hccCC---CCCCCCCccccCCCCCCHHHHHHHHHHHHHHcCccccccC
Q 014963 227 QVGNSWRTTGDITDTFESVMSRADANEVYA-DYARP---GGWNDPDMLEVGNGGMTKDEYIIHFSLWAISKAPLLLGCD 301 (415)
Q Consensus 227 ~~~~~~R~s~D~~~~w~~~~~~~~~~~~~~-~~~~~---~~~~DpD~l~vg~~~lt~~E~r~~~~~~a~~gspL~is~D 301 (415)
-|.-+| +..+....+++.+.++..++ ....+ ..|... + -|+.-.-+-.++.|.-|+.|.+|++
T Consensus 326 lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~----f----n~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 326 LYNEVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY----F----NTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp EEEE------SBS-BHHHHHHHHHHHHHHH---S--EEEE---------------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred eeeecc----cccccHHHHHHHHHHHhhhhccccchhhhHHHhhh----c----cchhhHHHHHHHHHCCCceeeecCC
Confidence 355666 22345556666676655552 11100 112111 1 1233333444566666778999874
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=77.39 E-value=22 Score=39.66 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.4
Q ss_pred CHHHH-HHHHHHHHHcCCcccCceEEEeCCCccccCCCCCC-----CeeecCCCC--CCcHHHHHHHHHHcCCeEEEEee
Q 014963 76 NEDIV-KAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENG-----NLQAKNATF--PSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 76 ~e~~i-~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G-----~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
+...+ .+.++.+ +++||+.|.|=-=++.....+.| ...++ .+| |+.||.|++.+|++|+++-|=+-
T Consensus 248 ty~~~~~~~L~yl-----k~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRI-----KALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 44443 3456766 77888888764322221111122 22333 355 56799999999999999754221
Q ss_pred CC---------------c---c-----------c---cc-CCCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 148 AG---------------Y---Y-----------T---CS-KQMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 148 pg---------------~---~-----------~---c~-~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
+. . + | |. ..+|.++.++-..++. +.+.+||++.+|..
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 10 0 0 0 00 0135577777666666 46899999999964
No 70
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.79 E-value=18 Score=37.40 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEe-CCCccccCCCCCCCeeecC------CCCCCcHHHHHHHHHHcCCeEEEEe
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNI-DDCWGEQVRDENGNLQAKN------ATFPSGIKALADYVHSKGLKLGMYS 146 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~I-DdGW~~~~~d~~G~~~~~~------~~FP~Gl~~l~~~i~~~Glk~Giw~ 146 (415)
-.+++.+++.+|.+...|+.. -|++| -+|..-. ..+..-|..+. +..=+=++.++++.|++||++==|+
T Consensus 60 ~~~~~el~~~ld~l~~ln~NT---v~~qV~~~G~~ly-pS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNT---VYPQVWNDGDALY-PSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred cccHHHHHHHHHHHHHcCCce---eEEEEecCccccc-cccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeech
Confidence 368999999999995555442 23333 2333221 11122222221 1111228999999999999999999
Q ss_pred eCCcc----------------------------------cccCCCCChhHHHHHH-HHHHHHcCCcEEEeec
Q 014963 147 SAGYY----------------------------------TCSKQMPGSLGYEEQD-AKTFALWGVDYLKYDN 183 (415)
Q Consensus 147 ~pg~~----------------------------------~c~~~~pg~~~~~~~~-~~~~~~wGvdyiK~D~ 183 (415)
+++.- +..+.+|.++.|+.+. ++..+.+.||.|-+|-
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecce
Confidence 87531 0112256789998654 5557899999999995
No 71
>PRK06233 hypothetical protein; Provisional
Probab=76.49 E-value=11 Score=38.46 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=61.6
Q ss_pred cCCCCCHHHHHHHHHHHHHc--CCcccCceEEEeCCCccccCCCCCCCeeecCCCCCC---cH----HH---HHHH-HHH
Q 014963 71 FWCDINEDIVKAAADALVSS--GLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPS---GI----KA---LADY-VHS 137 (415)
Q Consensus 71 ~~~~i~e~~i~~~ad~l~~~--gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~---Gl----~~---l~~~-i~~ 137 (415)
+|.+ .++.+.+.|+++.+. .|.++|++||+|||--....++... .+ ..+|. .. .. +.+. ++.
T Consensus 158 ~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~ 232 (372)
T PRK06233 158 FYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLN---DT-ENDPKEHQKYVKLAEDAVYVINKALAD 232 (372)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhcccc---cc-ccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 4543 367777777776542 5678999999999976432111100 00 01111 11 11 1111 233
Q ss_pred c--CCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 138 K--GLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 138 ~--Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+ +++++++++.|.+.-. ....+-++..+..+.+..||.+=+++-.
T Consensus 233 ~p~d~~i~~H~C~Gn~~~~---~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 279 (372)
T PRK06233 233 LPEDLTVTTHICRGNFKST---YLFSGGYEPVAKYLGQLNYDGFFLEYDN 279 (372)
T ss_pred CCcCCEEEEEeeCCCCCCc---ccccCcHHHHHHHHHhCCCCEEEEecCC
Confidence 3 6788999988755322 2222335566778888999999999854
No 72
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=75.28 E-value=56 Score=30.92 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccc--------------ccCCCCC---------hhHHHHHHHHHHHHcCCcE-EEeec
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYT--------------CSKQMPG---------SLGYEEQDAKTFALWGVDY-LKYDN 183 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~--------------c~~~~pg---------~~~~~~~~~~~~~~wGvdy-iK~D~ 183 (415)
+..++++||+.|+|+||=++|.+.. .....|| +.+.+++..+.+.+.|+++ |-+|.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 7889999999999999999997631 1112465 2333444444455667765 66665
Q ss_pred CCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 184 CYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 184 ~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
--. .+-...+.++|-++++.+
T Consensus 177 GI~---------~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 177 SCN---------QKTYEKLMEAGADVFIVG 197 (229)
T ss_pred CCC---------HHHHHHHHHcCCCEEEEC
Confidence 322 122334567898988875
No 73
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=74.60 E-value=20 Score=35.70 Aligned_cols=129 Identities=14% Similarity=0.059 Sum_probs=73.4
Q ss_pred CCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc
Q 014963 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK 138 (415)
Q Consensus 59 ~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~ 138 (415)
+.+-.+-.+|..+..+.+ ++++ ...+|+.++||-.-. |. +...|+ +.-++.+|+.
T Consensus 39 ~~~~~~~~~W~~ql~~~~-------~~~i-----~~~~~d~vVID~~~~-------g~---~~~~fs---~~~i~~Lk~~ 93 (315)
T TIGR01370 39 KPALSAVQHWGYQLQNAD-------LNEI-----HTSPFELVVIDYSKD-------GT---EDGTYS---PEEIVRAAAA 93 (315)
T ss_pred cccccccceEEEEeCCCC-------hhhh-----hccCCCEEEEccccc-------cC---cccCCC---HHHHHHHHhC
Confidence 334457778866555422 2333 334689999994311 10 111343 4556789999
Q ss_pred CCeEEEEeeCCc------cccc-----------CC-------------CCChhHHHHHHHHHHHHcCCcEEEeecCCCC-
Q 014963 139 GLKLGMYSSAGY------YTCS-----------KQ-------------MPGSLGYEEQDAKTFALWGVDYLKYDNCYTD- 187 (415)
Q Consensus 139 Glk~Giw~~pg~------~~c~-----------~~-------------~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~- 187 (415)
|-++=-|++.|. ++.. .. +|..+.++...++.+.+-|||+|=+|.+..-
T Consensus 94 g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~ 173 (315)
T TIGR01370 94 GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFE 173 (315)
T ss_pred CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchhhh
Confidence 999988988763 1111 11 2334455555577788999999999986431
Q ss_pred -----CC---CccchHH----HHHHHHHHcCCCEEEE
Q 014963 188 -----GS---KPMDRYP----IMTRALMKAGRPIYYS 212 (415)
Q Consensus 188 -----~~---~~~~~y~----~~~~al~~~g~~i~~~ 212 (415)
+. ...+... .+.+.+++..+++.|-
T Consensus 174 ~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 174 YWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred hhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 10 0011222 3444447788887663
No 74
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=73.81 E-value=9.7 Score=35.03 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCccc------c--------cCCCCC--hhHHHHHHHHHHHHcCCcEEEeecCCCCCCC
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYT------C--------SKQMPG--SLGYEEQDAKTFALWGVDYLKYDNCYTDGSK 190 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~------c--------~~~~pg--~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~ 190 (415)
....++++||++|+|+|+=+.||+.- . ..-.|| -|.|++..+......==.|-++|-...++..
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~ 179 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVG 179 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcC
Confidence 47899999999999999999998631 1 112354 4566665544433222334444443333332
Q ss_pred ccchHHHHHHHHHHcCCCEEEEe
Q 014963 191 PMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 191 ~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
+.. ..+..++|-+++.++
T Consensus 180 ~~t-----i~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 180 PST-----IDKAAEAGANMIVAG 197 (224)
T ss_pred cch-----HHHHHHcCCCEEEec
Confidence 211 123345666666654
No 75
>PLN02784 alpha-amylase
Probab=73.42 E-value=26 Score=39.42 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee-----ecCCCCC--CcHHHHHHHHHHcCCeEEEEeeC-
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ-----AKNATFP--SGIKALADYVHSKGLKLGMYSSA- 148 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~-----~~~~~FP--~Gl~~l~~~i~~~Glk~Giw~~p- 148 (415)
...|.+.++.| +++|++.|.|==-.... ...|++. +| .+|- +.|+.|++.+|++|+++-+=+-+
T Consensus 520 ~~~I~ekldyL-----~~LG~taIWLpP~~~s~--s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIlDiViN 591 (894)
T PLN02784 520 YMELGEKAAEL-----SSLGFTVVWLPPPTESV--SPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLGDAVLN 591 (894)
T ss_pred HHHHHHHHHHH-----HHhCCCEEEeCCCCCCC--CCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 67888999988 77788888765443322 1234332 33 4554 35999999999999996541110
Q ss_pred ----------Cc--------cc-----c-c-----------------------CCCCChhHHHHHHHHHHH-HcCCcEEE
Q 014963 149 ----------GY--------YT-----C-S-----------------------KQMPGSLGYEEQDAKTFA-LWGVDYLK 180 (415)
Q Consensus 149 ----------g~--------~~-----c-~-----------------------~~~pg~~~~~~~~~~~~~-~wGvdyiK 180 (415)
+. .| | . ..+|.++..+...++.+. +.|||++.
T Consensus 592 H~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfR 671 (894)
T PLN02784 592 HRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWR 671 (894)
T ss_pred cccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEE
Confidence 00 00 0 0 013446666777777775 78999999
Q ss_pred eecCC
Q 014963 181 YDNCY 185 (415)
Q Consensus 181 ~D~~~ 185 (415)
+|+..
T Consensus 672 LDaVK 676 (894)
T PLN02784 672 LDFVR 676 (894)
T ss_pred EeccC
Confidence 99984
No 76
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=71.47 E-value=15 Score=34.79 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcc--c--ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCC------CccchHH
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYY--T--CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGS------KPMDRYP 196 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~--~--c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~------~~~~~y~ 196 (415)
-.+..+..+|++|.|.-+-+..... . ...+..+...|.+...+.+.++|+|+|=+|+-+.... ...+.|.
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~ 131 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFV 131 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHH
Confidence 4678888899999997654432111 1 1111122456678888889999999999999765321 1346788
Q ss_pred HHHHHHHHcC
Q 014963 197 IMTRALMKAG 206 (415)
Q Consensus 197 ~~~~al~~~g 206 (415)
.+.+.|++..
T Consensus 132 ~lv~~Lr~~~ 141 (255)
T cd06542 132 RLIKELRKYM 141 (255)
T ss_pred HHHHHHHHHh
Confidence 8888888654
No 77
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=71.24 E-value=23 Score=33.35 Aligned_cols=83 Identities=19% Similarity=0.134 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
++.+++.+|+.|+++-|+..+-..... .....+.+....+...+.|.||||.-+-.. .....+.-..|.+.+.+...
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~~--~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEVA--DEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHBS--STTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhhc--ccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 899999999999999888433211111 111233456677778899999999998744 22334455567777776665
Q ss_pred C----EEEEe
Q 014963 208 P----IYYSL 213 (415)
Q Consensus 208 ~----i~~~~ 213 (415)
+ +.+++
T Consensus 191 p~~~~Vk~sG 200 (236)
T PF01791_consen 191 PGKVGVKASG 200 (236)
T ss_dssp TTTSEEEEES
T ss_pred CcceEEEEeC
Confidence 5 77764
No 78
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=70.90 E-value=20 Score=35.27 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=59.0
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCC-----CCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNAT-----FPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQD 167 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~-----FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~ 167 (415)
.++|.+.+.|+|-|-... ...++. .|. ++.+++.+|+.|.+..++.+.. ....
T Consensus 178 ~~~G~d~i~i~d~~~~~~-------~isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~cG~--------------~~~~ 235 (330)
T cd03465 178 IEAGADGIYISDPWASSS-------ILSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNCGD--------------TAPI 235 (330)
T ss_pred HHhCCCEEEEeCCccccC-------CCCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEECCC--------------chhH
Confidence 456899999999886531 011111 244 8999999999998887766521 1245
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 168 AKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 168 ~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
++.+.+.|+|-+-+|.+. .+.++.+..|..+.+.+
T Consensus 236 ~~~l~~~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i~G 270 (330)
T cd03465 236 LELMADLGADVFSIDVTV-----------DLAEAKKKVGDKACLMG 270 (330)
T ss_pred HHHHHHhCCCeEeecccC-----------CHHHHHHHhCCceEEEe
Confidence 788999999999988874 23444455666665543
No 79
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=70.22 E-value=14 Score=37.26 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCC-cccccCCCCChh-HHHHHHHHHHHHcCCcEEEeecCCCCCC--CccchHHHHHHHHH-
Q 014963 129 KALADYVHSKGLKLGMYSSAG-YYTCSKQMPGSL-GYEEQDAKTFALWGVDYLKYDNCYTDGS--KPMDRYPIMTRALM- 203 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg-~~~c~~~~pg~~-~~~~~~~~~~~~wGvdyiK~D~~~~~~~--~~~~~y~~~~~al~- 203 (415)
+.++.+.|++|+|+- ...+ ...-. ..|..+ .+++..++.++++|+|+|=+||-+.... ...+.|..+++.|+
T Consensus 67 ~~~~~~A~~~~v~v~--~~~~~~~~~l-~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 67 DELLCYAHSKGVRLV--LKGDVPLEQI-SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HHHHHHHHHcCCEEE--EECccCHHHc-CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH
Confidence 588889999999964 2211 11111 123333 4678999999999999999999876432 23456766666554
Q ss_pred ---HcCCCEEEEe
Q 014963 204 ---KAGRPIYYSL 213 (415)
Q Consensus 204 ---~~g~~i~~~~ 213 (415)
+.++...++.
T Consensus 144 ~l~~~~~~~~Lsv 156 (358)
T cd02875 144 AFKKENPGYQISF 156 (358)
T ss_pred HHhhcCCCcEEEE
Confidence 4444445544
No 80
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=70.11 E-value=13 Score=37.46 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=50.7
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCC-eEEEEeeCCcccccCCCCChhHHHHHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGL-KLGMYSSAGYYTCSKQMPGSLGYEEQDAKTF 171 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl-k~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~ 171 (415)
.++|.+-++|.|+|-.. ......+.=.+|- ++.+++.+++.+- .+-|++.-+. ...+..+
T Consensus 199 i~aGAdavqifDsW~g~----l~~~~~~~f~~~~-~~~i~~~vk~~~~~~pii~f~~ga--------------~~~l~~m 259 (352)
T COG0407 199 IEAGADAVQIFDSWAGV----LSMIDYDEFVLPY-MKRIVREVKEVKGGVPVIHFCKGA--------------GHLLEDM 259 (352)
T ss_pred HHhCCCEEEeecccccc----CCcccHHHHhhhH-HHHHHHHHHHhCCCCcEEEECCCc--------------HHHHHHH
Confidence 66788999999999653 1111122223354 8999999998766 3556655331 1245778
Q ss_pred HHcCCcEEEeecCCC
Q 014963 172 ALWGVDYLKYDNCYT 186 (415)
Q Consensus 172 ~~wGvdyiK~D~~~~ 186 (415)
+++|+|.+-+|+-..
T Consensus 260 ~~~g~d~l~vdw~v~ 274 (352)
T COG0407 260 AKTGFDVLGVDWRVD 274 (352)
T ss_pred HhcCCcEEeeccccC
Confidence 999999999998653
No 81
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=69.30 E-value=6 Score=40.05 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+.+..+++++.+ +++|++.+=. + ..-...+++.+-.-++.|.+++|+.||+.-+=++|.
T Consensus 12 ~~~~~~~yi~~a-----~~~Gf~~iFT-----S-----L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~------ 70 (357)
T PF05913_consen 12 SFEENKAYIEKA-----AKYGFKRIFT-----S-----LHIPEDDPEDYLERLKELLKLAKELGMEVIADISPK------ 70 (357)
T ss_dssp -HHHHHHHHHHH-----HCTTEEEEEE-----E-----E---------HHHHHHHHHHHHHHCT-EEEEEE-CC------
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEC-----C-----CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH------
Confidence 578888999988 6667654421 0 011111222222349999999999999987666643
Q ss_pred CCCChhHHHH---HHHHHHHHcCCcEEEeecCCC
Q 014963 156 QMPGSLGYEE---QDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 156 ~~pg~~~~~~---~~~~~~~~wGvdyiK~D~~~~ 186 (415)
+..++. .+.+.|+++||+.|.+|+-..
T Consensus 71 ----~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~ 100 (357)
T PF05913_consen 71 ----VLKKLGISYDDLSFFKELGIDGLRLDYGFS 100 (357)
T ss_dssp ----HHHTTT-BTTBTHHHHHHT-SEEEESSS-S
T ss_pred ----HHHHcCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 343331 246789999999999998654
No 82
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=68.40 E-value=24 Score=31.61 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecC
Q 014963 345 SGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWE 385 (415)
Q Consensus 345 ~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~ 385 (415)
.+++.+|.++|+++++++++|.++.+.. ....++..|-.
T Consensus 102 ~~~~l~v~vVN~~~~~~~v~l~l~g~~~--~~~a~~~~Ltg 140 (177)
T PF06964_consen 102 DGGELYVKVVNRSSEPQTVTLNLQGFSP--AATATVTTLTG 140 (177)
T ss_dssp TTTEEEEEEEE-SSSBEEEEEEETTSTS---EEEEEEEEET
T ss_pred CCCEEEEEEEECCCCCEEEEEEEcCCCC--CceEEEEEEEC
Confidence 3457999999999889999999875544 24456665544
No 83
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=68.02 E-value=10 Score=37.69 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg 149 (415)
.++|+..+|+.+++||||+.+.
T Consensus 152 V~EL~~A~rk~dirfGLY~Slf 173 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLF 173 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHH
Confidence 6999999999999999999874
No 84
>PLN02877 alpha-amylase/limit dextrinase
Probab=67.36 E-value=93 Score=35.78 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCeEEEEee--------------------CCcc------------ccc-CC---CCChhHHHHHHHHH-
Q 014963 128 IKALADYVHSKGLKLGMYSS--------------------AGYY------------TCS-KQ---MPGSLGYEEQDAKT- 170 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~--------------------pg~~------------~c~-~~---~pg~~~~~~~~~~~- 170 (415)
+|.|++.+|+.|+++-+=+- |+.+ .|. .+ +|-++.++-..++.
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999654210 1100 121 11 23345565444454
Q ss_pred HHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHc-----CCCEEEEecCCC
Q 014963 171 FALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKA-----GRPIYYSLCEWG 217 (415)
Q Consensus 171 ~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~-----g~~i~~~~c~~g 217 (415)
++++|||+|.+|-...-....+...++..++|... |+.+++-+=.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 56899999999998764333333333344444321 577776654453
No 85
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=66.95 E-value=23 Score=33.65 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc--c-cCCCCChh-HHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 014963 114 NGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT--C-SKQMPGSL-GYEEQDAKTFALWGVDYLKYDNCYTDGS 189 (415)
Q Consensus 114 ~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~--c-~~~~pg~~-~~~~~~~~~~~~wGvdyiK~D~~~~~~~ 189 (415)
.|...... -+..+..+.+.+|++|+|.-+-+.-+... . .-..|..+ .+++..++.++++|+|+|=+|+-.....
T Consensus 36 ~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~ 113 (253)
T cd06545 36 NGTLNANP--VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT 113 (253)
T ss_pred CCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc
Confidence 45554431 12347788999999999976654322100 0 00123333 4678888999999999999999765432
Q ss_pred CccchHHHHHHHHHHc
Q 014963 190 KPMDRYPIMTRALMKA 205 (415)
Q Consensus 190 ~~~~~y~~~~~al~~~ 205 (415)
.+.|..+.+.|++.
T Consensus 114 --~~~~~~fv~~Lr~~ 127 (253)
T cd06545 114 --FGDYLVFIRALYAA 127 (253)
T ss_pred --HhHHHHHHHHHHHH
Confidence 45677777766644
No 86
>PLN00196 alpha-amylase; Provisional
Probab=66.27 E-value=19 Score=37.44 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred EEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee-----ecCCCCCC--cHHHHHHHHH
Q 014963 64 GWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ-----AKNATFPS--GIKALADYVH 136 (415)
Q Consensus 64 GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~-----~~~~~FP~--Gl~~l~~~i~ 136 (415)
-|++|..-+ -..+.|.+.++.| +++|++.|.|==-.... ...|++. .++++|-. -++.|++.+|
T Consensus 32 ~W~~~~~~g--g~~~~i~~kldyL-----~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 32 NWESWKQNG--GWYNFLMGKVDDI-----AAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred ccCCCCCCC--cCHHHHHHHHHHH-----HHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 466664422 2467788999988 77888877664333321 2345543 44456642 4999999999
Q ss_pred HcCCeEEE-----------------EeeC-C------cc-----ccc-------------------------CCCCChhH
Q 014963 137 SKGLKLGM-----------------YSSA-G------YY-----TCS-------------------------KQMPGSLG 162 (415)
Q Consensus 137 ~~Glk~Gi-----------------w~~p-g------~~-----~c~-------------------------~~~pg~~~ 162 (415)
++|+|+-+ |... + .. .|. ..+|.++.
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 99999632 2210 0 00 010 02456777
Q ss_pred HHHHHHHHHH-HcCCcEEEeecCC
Q 014963 163 YEEQDAKTFA-LWGVDYLKYDNCY 185 (415)
Q Consensus 163 ~~~~~~~~~~-~wGvdyiK~D~~~ 185 (415)
++...++.+. +.|||++.+|+..
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak 206 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAK 206 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhh
Confidence 8877788875 7899999999874
No 87
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=65.84 E-value=48 Score=36.66 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeeC-------------------------------Ccc----cccC----CCCChhHHHHHH
Q 014963 127 GIKALADYVHSKGLKLGMYSSA-------------------------------GYY----TCSK----QMPGSLGYEEQD 167 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~p-------------------------------g~~----~c~~----~~pg~~~~~~~~ 167 (415)
.+|.|++.+|++||++-+=+-. +.+ .|.. .+|.++.++...
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 4999999999999996542111 000 1211 246678887666
Q ss_pred HHHH-HHcCCcEEEeecCCCCCCC--ccchHHHHHHHHHH
Q 014963 168 AKTF-ALWGVDYLKYDNCYTDGSK--PMDRYPIMTRALMK 204 (415)
Q Consensus 168 ~~~~-~~wGvdyiK~D~~~~~~~~--~~~~y~~~~~al~~ 204 (415)
++.+ .+.|||++.+|....-... .......+.++|++
T Consensus 326 l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 326 LRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 7765 5899999999986542221 11223457777775
No 88
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=65.63 E-value=40 Score=27.06 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=34.7
Q ss_pred EEEEcCCCcEEEEEEecCC-CCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEE
Q 014963 340 WTAPLSGYRFAVLIVNRDQ-WPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMY 409 (415)
Q Consensus 340 w~~~l~~g~~~Va~fN~~~-~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll 409 (415)
+.|-..+.+..+.+-|.+. ....+++.+..-|..++ -.+.|+.+.++..--..+.+++++....-++|
T Consensus 11 ~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g--~~v~dVlsc~~~tv~~~G~l~v~m~~G~P~Vl 79 (91)
T PF09260_consen 11 FRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAG--TEVTDVLSCTSYTVDSNGTLTVPMSNGEPRVL 79 (91)
T ss_dssp EEESSTTT-EEEEEE-S-T-T---EEEEESS----TT---EEEETTTTEEEE--TTS-EEEEESTT--EEE
T ss_pred EEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCC--CEEEEEecCCEEEECCCCEEEEEEcCCceEEE
Confidence 3443323344556667776 46777888776777653 48999999988632357788888877555544
No 89
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.26 E-value=45 Score=39.41 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHcCCeEEEEeeC-----Cc--------------------------c----cccC----CCCChhHHHHHH
Q 014963 127 GIKALADYVHSKGLKLGMYSSA-----GY--------------------------Y----TCSK----QMPGSLGYEEQD 167 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~p-----g~--------------------------~----~c~~----~~pg~~~~~~~~ 167 (415)
.+|.|++.+|++||++-|=+-+ +. + .|.. .+|.+..++...
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 4999999999999996542111 00 0 0211 146677777777
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEE
Q 014963 168 AKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYY 211 (415)
Q Consensus 168 ~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~ 211 (415)
++.+.+.|||++.+|-...-+..+.+-...+...+++..++.++
T Consensus 328 lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 328 LRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred HHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCc
Confidence 77766699999999986553222222224555556655555443
No 90
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=64.85 E-value=13 Score=36.21 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=49.7
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQD 167 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~ 167 (415)
.++|.+.++|||-|.... .. ...++.| |. ++.+++.++..|.+.++++..+ ....
T Consensus 154 ~eaG~d~i~i~dp~~~~~----~~-~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH~cg~--------------~~~~ 213 (306)
T cd00465 154 IEAGAKALQIHEPAFSQI----NS-FLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHHSCYD--------------AADL 213 (306)
T ss_pred HHhCCCEEEEeccccccc----CC-CCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEEECCC--------------HHHH
Confidence 567999999999988641 10 0111111 33 7888888888887777655422 1345
Q ss_pred HHHHHHcCCcEEEeecCC
Q 014963 168 AKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 168 ~~~~~~wGvdyiK~D~~~ 185 (415)
+..+.+.|+|.+-+|+..
T Consensus 214 ~~~l~~~~~d~~~~d~~~ 231 (306)
T cd00465 214 LEEMIQLGVDVISFDMTV 231 (306)
T ss_pred HHHHHHhCcceEeccccc
Confidence 677889999999999875
No 91
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=64.59 E-value=34 Score=33.95 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=57.2
Q ss_pred CcccCceEEEeCCCccccCCCCCCCeeecC-CC--CCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHH
Q 014963 92 LSKLGYEYVNIDDCWGEQVRDENGNLQAKN-AT--FPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDA 168 (415)
Q Consensus 92 l~~~G~~~~~IDdGW~~~~~d~~G~~~~~~-~~--FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~ 168 (415)
+.++|.+.++|+|.|... .-+.+.. +. .|. ++.+++.+|+.|..+.+++..+ ....+
T Consensus 189 ~~~~Gad~I~i~dp~a~~-----~~lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~CG~--------------~~~~~ 248 (340)
T TIGR01463 189 MVEAGADVIAIADPFASS-----DLISPETYKEFGLPY-QKRLFAYIKEIGGITVLHICGF--------------TQPIL 248 (340)
T ss_pred HHHcCCCEEEecCCccCc-----cccCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEECCC--------------chhhH
Confidence 357899999999988542 1111110 11 133 8999999999887777766522 12346
Q ss_pred HHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 169 KTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 169 ~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
..+++.|+|-+-+|+... +.++-+..|..+.+.+
T Consensus 249 ~~l~~~g~d~ls~d~~~~-----------l~~~~~~~g~~~~i~G 282 (340)
T TIGR01463 249 RDIANNGCFGFSVDMKPG-----------MDHAKRVIGGQASLVG 282 (340)
T ss_pred HHHHHhCCCEEeecCCCC-----------HHHHHHHcCCceEEEe
Confidence 678889999988887642 3334444565665544
No 92
>PRK09936 hypothetical protein; Provisional
Probab=64.44 E-value=27 Score=34.18 Aligned_cols=69 Identities=19% Similarity=0.397 Sum_probs=49.8
Q ss_pred EEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCC--c-HHHHHHHHHHcCC
Q 014963 64 GWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPS--G-IKALADYVHSKGL 140 (415)
Q Consensus 64 GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~--G-l~~l~~~i~~~Gl 140 (415)
.|.-|+.. .+++.+...+....+ +..|++.++| =|... |+ +.|+. | +....+..+++|+
T Consensus 25 F~Qp~n~d-~~~~~~qWq~~~~~~-----~~~G~~tLiv--QWt~y-----G~-----~~fg~~~g~La~~l~~A~~~Gl 86 (296)
T PRK09936 25 FYQPQNRD-SQVTDTQWQGLWSQL-----RLQGFDTLVV--QWTRY-----GD-----ADFGGQRGWLAKRLAAAQQAGL 86 (296)
T ss_pred eecccccc-CCCCHHHHHHHHHHH-----HHcCCcEEEE--Eeeec-----cC-----CCcccchHHHHHHHHHHHHcCC
Confidence 36666643 379999999999998 6678888887 35442 21 13332 2 7888889999999
Q ss_pred e--EEEEeeCCc
Q 014963 141 K--LGMYSSAGY 150 (415)
Q Consensus 141 k--~Giw~~pg~ 150 (415)
| +|||++|..
T Consensus 87 ~v~vGL~~Dp~y 98 (296)
T PRK09936 87 KLVVGLYADPEF 98 (296)
T ss_pred EEEEcccCChHH
Confidence 8 899999864
No 93
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=62.60 E-value=50 Score=30.05 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=60.5
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA 172 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 172 (415)
+..|+++++|=.+ .|.-..|+ -++.-.+.+++.|+++|.|+=+-. .+.+.+.+--+.+++.++
T Consensus 22 k~~Gi~faiikat--------eG~~~~D~-----~~~~n~~~A~~aGl~vG~Yhf~~~----~~~~~a~~eA~~f~~~~~ 84 (192)
T cd06522 22 KNYGVKAVIVKLT--------EGTTYRNP-----YAASQIANAKAAGLKVSAYHYAHY----TSAADAQAEARYFANTAK 84 (192)
T ss_pred HHcCCCEEEEEEc--------CCCCccCh-----HHHHHHHHHHHCCCeeEEEEEEec----CChHHHHHHHHHHHHHHH
Confidence 4557887777532 23333443 267788899999999999985321 111233333444566667
Q ss_pred HcCCc---EEEeecCCCCCCC-ccchHHHHHHHHHHcC--CCEEEE
Q 014963 173 LWGVD---YLKYDNCYTDGSK-PMDRYPIMTRALMKAG--RPIYYS 212 (415)
Q Consensus 173 ~wGvd---yiK~D~~~~~~~~-~~~~y~~~~~al~~~g--~~i~~~ 212 (415)
..|+. .+-+|.-...... ......++++.+++.| ++++++
T Consensus 85 ~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 85 SLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred HcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 66654 3567765433211 1233457888888776 577775
No 94
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=61.77 E-value=27 Score=32.87 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCCCCcHHHHHHHHHHcCCeEEEEeeCCc
Q 014963 122 ATFPSGIKALADYVHSKGLKLGMYSSAGY 150 (415)
Q Consensus 122 ~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 150 (415)
|.-|+ +..++++||+.|.|+||=++|++
T Consensus 93 E~~~~-~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 93 EATEH-IHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred ccCcC-HHHHHHHHHHcCCeEEEEECCCC
Confidence 33344 99999999999999999999986
No 95
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=60.62 E-value=80 Score=31.05 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCccc-ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCC--ccchHHHHHHHHH
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYT-CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSK--PMDRYPIMTRALM 203 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~-c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~--~~~~y~~~~~al~ 203 (415)
.+..-++.+|++|.|+-|-+.-.... .......+..+.+.+.+.+..+|+|.|-+|.-+....+ ..++..+..+.|+
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 46777889999999987755421110 00111234556677777889999999999998754222 2456667777788
Q ss_pred HcCCCEEEEec
Q 014963 204 KAGRPIYYSLC 214 (415)
Q Consensus 204 ~~g~~i~~~~c 214 (415)
+..+++.++..
T Consensus 135 ~~~p~l~vs~T 145 (294)
T cd06543 135 KEYPDLKISFT 145 (294)
T ss_pred HHCCCcEEEEe
Confidence 88787777754
No 96
>smart00632 Aamy_C Aamy_C domain.
Probab=60.50 E-value=76 Score=24.50 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=32.3
Q ss_pred cEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecC----Cccccccc-CceEEEEECCCcEE
Q 014963 348 RFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWE----HKTLETPL-AGNLSANLDPHTCK 407 (415)
Q Consensus 348 ~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~----g~~l~~~~-~~~l~~~l~ph~~~ 407 (415)
+..+.++|.+....++++. -+|+. .. ..|+-+ ++.+ ... .+.++++||++++.
T Consensus 17 ~~g~VaiN~~~~~~~~~~~---t~lp~-G~--Y~d~l~g~~~g~~v-~V~~~G~~~~~l~~~~~v 74 (81)
T smart00632 17 SKGFVAINRSDSDLTITLQ---TSLPA-GT--YCDVISGLCTGKSV-TVGSNGIATFTLPAGGAV 74 (81)
T ss_pred CeEEEEEECCCCceEEEEe---ecCCC-cc--eEEEecCcccCCEE-EECCCCEEEEEECCCCeE
Confidence 4567777988765555553 24543 32 446555 4444 233 57888999999843
No 97
>smart00642 Aamy Alpha-amylase domain.
Probab=60.48 E-value=32 Score=30.70 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCC--CCCCCee-----ecCCCCC--CcHHHHHHHHHHcCCeEEE
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVR--DENGNLQ-----AKNATFP--SGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~--d~~G~~~-----~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 144 (415)
+-+.+.+.++.+ +++|++.|.|=-=+..... ...|+.. +++ +|- +.++.|++.+|++|+++-+
T Consensus 17 ~~~gi~~~l~yl-----~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 17 DLQGIIEKLDYL-----KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 346677777777 7788888876332222210 1112221 221 231 3599999999999999754
No 98
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=59.72 E-value=88 Score=29.62 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCC--eEEEEeeCCccc--------------ccCCCCC---------hhHHHHHHHHHHHHcCCcE-EEe
Q 014963 128 IKALADYVHSKGL--KLGMYSSAGYYT--------------CSKQMPG---------SLGYEEQDAKTFALWGVDY-LKY 181 (415)
Q Consensus 128 l~~l~~~i~~~Gl--k~Giw~~pg~~~--------------c~~~~pg---------~~~~~~~~~~~~~~wGvdy-iK~ 181 (415)
+..+.++||+.|+ |+||=++|++.. .....|| +.+.+++..+...+.|+++ |-+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7899999999999 999999998631 1112455 3333444444556678765 667
Q ss_pred ecCCCCCCCccchHHHHHHHHHHcCCCEEEEec
Q 014963 182 DNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLC 214 (415)
Q Consensus 182 D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c 214 (415)
|.--. .+-...+.++|.++++.++
T Consensus 185 DGGI~---------~~ti~~l~~aGaD~~V~GS 208 (228)
T PRK08091 185 DGSMT---------LELASYLKQHQIDWVVSGS 208 (228)
T ss_pred ECCCC---------HHHHHHHHHCCCCEEEECh
Confidence 75321 1233456678999988763
No 99
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=59.71 E-value=30 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCCCCcHHHHHHHHHHcCCeEEEEeeCCc
Q 014963 122 ATFPSGIKALADYVHSKGLKLGMYSSAGY 150 (415)
Q Consensus 122 ~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 150 (415)
|..++ +..+.++||+.|+|+||-++|++
T Consensus 89 E~~~~-~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 89 EATED-PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp GGTTT-HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred cchhC-HHHHHHHHHHhCCCEEEEEECCC
Confidence 33343 88999999999999999999986
No 100
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=59.54 E-value=90 Score=26.81 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCcccCceEEEeCCC----ccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCC
Q 014963 82 AAADALVSSGLSKLGYEYVNIDDC----WGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 82 ~~ad~l~~~gl~~~G~~~~~IDdG----W~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
+.++.| +++|++.++|..+ |.-. ..+.|...|.-. -+=|+++++.+|++|+++-+|++.+
T Consensus 4 ~~~~~l-----k~~~v~si~i~a~~h~g~ayY-Pt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTL-----KEAHVNSITIFAKCHGGYAYY-PTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHH-----HHhCCCEEEEEcccccEEEEc-cCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 445555 6678899999665 2111 111243333322 2347999999999999999999875
No 101
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=59.50 E-value=21 Score=33.68 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEee
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
|+.+++.+|++|+++.+|..+. -....+.+.++|||+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~--------------~~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPD--------------RPNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCC--------------hHHHHHHHHHhCCCEEecC
Confidence 7889999999999999998753 1445678889999998766
No 102
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=59.26 E-value=18 Score=35.16 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++|+++..|+-+.. ....++++.++|||+|-.|++
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n-------------~~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLN-------------DPENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCC-------------CHHHHHHHHHcCCCEEEecCC
Confidence 5789999999999999986321 133677889999999999864
No 103
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=59.12 E-value=86 Score=29.53 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccc--------------ccCCCCCh--hHHH-------HHHHHHHHHcCCcE-EEeec
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYT--------------CSKQMPGS--LGYE-------EQDAKTFALWGVDY-LKYDN 183 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~--------------c~~~~pg~--~~~~-------~~~~~~~~~wGvdy-iK~D~ 183 (415)
+..+.++||+.|+|+||=++|.+.. +....||. +.|+ +...+...+.|.++ |-+|.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG 178 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999998632 11224662 3333 33333334446654 55665
Q ss_pred CCCCCCCccchHHHHHHHHHHcCCCEEEEec
Q 014963 184 CYTDGSKPMDRYPIMTRALMKAGRPIYYSLC 214 (415)
Q Consensus 184 ~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c 214 (415)
--. .+-...+.++|.++++.++
T Consensus 179 GI~---------~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 179 GVK---------ADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred CCC---------HHHHHHHHHcCCCEEEECh
Confidence 221 1233456678999988763
No 104
>PLN03059 beta-galactosidase; Provisional
Probab=59.01 E-value=1.8e+02 Score=32.96 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHHHHHHhhccccccccCccccccccccchhhhhhhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHH
Q 014963 8 LLGKLICVLLSCLMVMAAASSRATIMGKVSNTKFHHHSERLRRNLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADAL 87 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l 87 (415)
|-|.|+++||..||.+.+.+=.-....+|. -++. .-.-+| .|-+-++- .-.|+++..+...+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~d~~----~f~idG---~p~~i~sG-~iHY~R~~p~~W~d~L~k~ 68 (840)
T PLN03059 2 LRGSLVVFLLLFLLFLLSSSWVSHGSASVS-----YDHR----AFIING---QRRILISG-SIHYPRSTPEMWPDLIQKA 68 (840)
T ss_pred cccceehhhHHHHHHHhhhhhhccceeEEE-----EeCC----EEEECC---EEEEEEEe-CcccCcCCHHHHHHHHHHH
Confidence 457788888888887775332222222221 1111 111122 23333332 3345679999999999988
Q ss_pred HHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeE
Q 014963 88 VSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKL 142 (415)
Q Consensus 88 ~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~ 142 (415)
|++|++.|..==-|.--+. ..|.+.....+ .|..+++-+++.||.+
T Consensus 69 -----Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~---DL~~Fl~la~e~GLyv 114 (840)
T PLN03059 69 -----KDGGLDVIQTYVFWNGHEP-SPGNYYFEDRY---DLVKFIKVVQAAGLYV 114 (840)
T ss_pred -----HHcCCCeEEEEecccccCC-CCCeeeccchH---HHHHHHHHHHHcCCEE
Confidence 6667665554335654322 23555443211 3667777778888653
No 105
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.94 E-value=63 Score=31.06 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.+++.|+.+ +++|+.++- .|=+++ |.+...++--.. .|++.|.++.++.|+.+-- ++
T Consensus 27 s~e~~~~~a~~~-----~~~g~~~~r--~g~~kp-Rts~~sf~G~G~---~gl~~L~~~~~~~Gl~~~T--ev------- 86 (250)
T PRK13397 27 SYDHIRLAASSA-----KKLGYNYFR--GGAYKP-RTSAASFQGLGL---QGIRYLHEVCQEFGLLSVS--EI------- 86 (250)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEE--ecccCC-CCCCcccCCCCH---HHHHHHHHHHHHcCCCEEE--ee-------
Confidence 789999999997 666776553 222222 333333322222 2899999999999998731 21
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
|....++.+.+ .+|.+|+=-.... -..+.+++.+++.+++++
T Consensus 87 -------~d~~~v~~~~e-~vdilqIgs~~~~-------n~~LL~~va~tgkPVilk 128 (250)
T PRK13397 87 -------MSERQLEEAYD-YLDVIQVGARNMQ-------NFEFLKTLSHIDKPILFK 128 (250)
T ss_pred -------CCHHHHHHHHh-cCCEEEECccccc-------CHHHHHHHHccCCeEEEe
Confidence 12334566677 6999998653221 134666666666666665
No 106
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=58.64 E-value=32 Score=34.46 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE-------EeeCCcccc
Q 014963 81 KAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM-------YSSAGYYTC 153 (415)
Q Consensus 81 ~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi-------w~~pg~~~c 153 (415)
++..+.| ++.|+++|-|- =|-++.. .|....+ -...+++++|+.|||+-| |.+|+.+..
T Consensus 27 ~d~~~il-----k~~G~N~vRlR-vwv~P~~--~g~~~~~------~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~ 92 (332)
T PF07745_consen 27 KDLFQIL-----KDHGVNAVRLR-VWVNPYD--GGYNDLE------DVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK 92 (332)
T ss_dssp --HHHHH-----HHTT--EEEEE-E-SS-TT--TTTTSHH------HHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B-
T ss_pred CCHHHHH-----HhcCCCeEEEE-eccCCcc--cccCCHH------HHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC
Confidence 3455666 66778887775 3665421 1322222 278899999999999887 345554332
Q ss_pred cCCC---------CChhHHHHHHHHHHHHcCC--cEEEeec
Q 014963 154 SKQM---------PGSLGYEEQDAKTFALWGV--DYLKYDN 183 (415)
Q Consensus 154 ~~~~---------pg~~~~~~~~~~~~~~wGv--dyiK~D~ 183 (415)
...- ..++.|-...++.|++.|+ |+|-+=+
T Consensus 93 P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGN 133 (332)
T PF07745_consen 93 PAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGN 133 (332)
T ss_dssp -TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESS
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCc
Confidence 1100 1145667788889999887 3444443
No 107
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=57.42 E-value=17 Score=34.73 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee-----ecCCCCC--CcHHHHHHHHHHcCCeEEEEeeCC
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ-----AKNATFP--SGIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~-----~~~~~FP--~Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
-+.|.+.+|.| +++|++.|.|=-=+.... ...|++. +|+ +|- +.++.|++.+|++|||+-+=+-++
T Consensus 3 ~~gi~~kLdyl-----~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYL-----KDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHTHHHH-----HHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHHHHhhHHH-----HHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecc
Confidence 35677888888 778888887754444321 2234332 343 442 258999999999999987633221
Q ss_pred -----c------------------cc----cc---------------------------------CCCCChhHHHHHHHH
Q 014963 150 -----Y------------------YT----CS---------------------------------KQMPGSLGYEEQDAK 169 (415)
Q Consensus 150 -----~------------------~~----c~---------------------------------~~~pg~~~~~~~~~~ 169 (415)
. .+ +. ..+|.++.++...++
T Consensus 76 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 76 HTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp EEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 0 00 00 012346677777888
Q ss_pred HHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 170 TFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 170 ~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
.+.+.|||+|.+|....-. .+....+.+++++..+++++-
T Consensus 156 ~w~~~giDGfR~D~~~~~~---~~~~~~~~~~~~~~~~~~~~i 195 (316)
T PF00128_consen 156 FWIEEGIDGFRLDAAKHIP---KEFWKEFRDEVKEEKPDFFLI 195 (316)
T ss_dssp HHHHTTESEEEETTGGGSS---HHHHHHHHHHHHHHHTTSEEE
T ss_pred chhhceEeEEEEccccccc---hhhHHHHhhhhhhhcccccee
Confidence 8888999999999876432 245556777777655655443
No 108
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=56.30 E-value=90 Score=30.94 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=63.4
Q ss_pred cCC-CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCC--CeeecCCCCC----CcHHHHHHHHHHcCCeEE
Q 014963 71 FWC-DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENG--NLQAKNATFP----SGIKALADYVHSKGLKLG 143 (415)
Q Consensus 71 ~~~-~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G--~~~~~~~~FP----~Gl~~l~~~i~~~Glk~G 143 (415)
||. --|.+.=++.++++.+.|| ++++ +.+..|.+. +|. +.+| .-|++|++..++.|++|+
T Consensus 7 FYG~PWs~e~R~~l~~f~~~~km-----N~Yi-----YAPKdDpyhr~~Wr---e~Yp~~el~~l~~L~~~a~~~~V~Fv 73 (306)
T PF07555_consen 7 FYGRPWSHEDRLDLIRFLGRYKM-----NTYI-----YAPKDDPYHRSKWR---EPYPEEELAELKELADAAKANGVDFV 73 (306)
T ss_dssp SSSS---HHHHHHHHHHHHHTT-------EEE-----E--TT-TTTTTTTT---S---HHHHHHHHHHHHHHHHTT-EEE
T ss_pred cCCCCCCHHHHHHHHHHHHHcCC-----ceEE-----ECCCCChHHHhhhc---ccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 444 4688888999999966554 4443 223223222 231 2333 248999999999999999
Q ss_pred EEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCC----------CCccchHHHHHHHHH
Q 014963 144 MYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDG----------SKPMDRYPIMTRALM 203 (415)
Q Consensus 144 iw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~----------~~~~~~y~~~~~al~ 203 (415)
.=+.||..-|-.. +....-+..-++++.+.||+-|=+=|-..+. ....++...+...+.
T Consensus 74 ~aisPg~~~~~s~-~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~ 142 (306)
T PF07555_consen 74 YAISPGLDICYSS-EEDFEALKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVN 142 (306)
T ss_dssp EEEBGTTT--TSH-HHHHHHHHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHH
T ss_pred EEECcccccccCc-HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHH
Confidence 9899987655221 1222334455666789999999887643321 123345556666664
No 109
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=55.87 E-value=35 Score=32.61 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccch----HHHHHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDR----YPIMTRALM 203 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~----y~~~~~al~ 203 (415)
++.+++++|+.|+++. ++-+. + | -.-...+++..+|+||+|-........... ...+.+..+
T Consensus 138 ~~~~l~~L~~~G~~ia--lDDFG--t-----G-----~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~ 203 (256)
T COG2200 138 ALALLRQLRELGVRIA--LDDFG--T-----G-----YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAH 203 (256)
T ss_pred HHHHHHHHHHCCCeEE--EECCC--C-----C-----HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHH
Confidence 7889999999997654 44221 1 1 113567889999999999755433322222 223444446
Q ss_pred HcCCCEEEEecC
Q 014963 204 KAGRPIYYSLCE 215 (415)
Q Consensus 204 ~~g~~i~~~~c~ 215 (415)
+.+..++.++++
T Consensus 204 ~l~~~vvaEGVE 215 (256)
T COG2200 204 KLGLTVVAEGVE 215 (256)
T ss_pred HCCCEEEEeecC
Confidence 778888888765
No 110
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=55.79 E-value=30 Score=39.17 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=46.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecC----CCCC--CcHHHHHHHHHHcCCeEE
Q 014963 70 HFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKN----ATFP--SGIKALADYVHSKGLKLG 143 (415)
Q Consensus 70 ~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~----~~FP--~Gl~~l~~~i~~~Glk~G 143 (415)
+|....+-+.+.+.++.+ +++|++.+.+=--+........|+...|. ..|. ++++.|++.+|++||++-
T Consensus 12 Q~~~~~tf~~~~~~l~YL-----~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VI 86 (879)
T PRK14511 12 QFHAGFTFDDAAELVPYF-----ADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLI 86 (879)
T ss_pred eeCCCCCHHHHHHHhHHH-----HHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455578889999999998 77888888765444332122244433222 1232 369999999999999976
Q ss_pred E
Q 014963 144 M 144 (415)
Q Consensus 144 i 144 (415)
+
T Consensus 87 l 87 (879)
T PRK14511 87 L 87 (879)
T ss_pred E
Confidence 5
No 111
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=54.44 E-value=17 Score=35.28 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=43.8
Q ss_pred CCChhHH--HHHHHHHHHHcCCcEEEeecCCCCCCC--ccchHHHHHHHHHHcCCCEEEEecC
Q 014963 157 MPGSLGY--EEQDAKTFALWGVDYLKYDNCYTDGSK--PMDRYPIMTRALMKAGRPIYYSLCE 215 (415)
Q Consensus 157 ~pg~~~~--~~~~~~~~~~wGvdyiK~D~~~~~~~~--~~~~y~~~~~al~~~g~~i~~~~c~ 215 (415)
.|+..+- .++.++.+++||+|||-+--...+++. +.+.+.+-.+.|+...+.|+++ |-
T Consensus 135 ~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~L 196 (360)
T KOG2672|consen 135 NPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-CL 196 (360)
T ss_pred CCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-hc
Confidence 3544432 367888999999999999887766542 4567778888888889999888 64
No 112
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=53.92 E-value=1.2e+02 Score=27.56 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCeEEEEe-eCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 128 IKALADYVHSKGLKLGMYS-SAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~-~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
++.++++++++|+++++-+ +|. . ....++...+.|+||+|+..
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~----------t---~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVK----------D---KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC----------C---hHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999843 322 1 22344555778999999964
No 113
>PRK08508 biotin synthase; Provisional
Probab=53.41 E-value=47 Score=32.25 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe-CCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNI-DDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTC 153 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~I-DdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 153 (415)
++.+.|++.|+.+++ .|+.-|.+ ++|=. . +...|. =+.++++.||+.+....++...|..
T Consensus 40 ~s~eeI~~~a~~a~~-----~g~~~~~lv~sg~~-~----------~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~~-- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAKA-----NGALGFCLVTSGRG-L----------DDKKLE-YVAEAAKAVKKEVPGLHLIACNGTA-- 100 (279)
T ss_pred CCHHHHHHHHHHHHH-----CCCCEEEEEeccCC-C----------CcccHH-HHHHHHHHHHhhCCCcEEEecCCCC--
Confidence 688999999998844 45554544 43321 1 001111 2678888999887655555443321
Q ss_pred cCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 154 SKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 154 ~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
-+..++.|++.|+|.+-++.
T Consensus 101 ----------~~e~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 101 ----------SVEQLKELKKAGIFSYNHNL 120 (279)
T ss_pred ----------CHHHHHHHHHcCCCEEcccc
Confidence 25567888899998888864
No 114
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=52.79 E-value=36 Score=38.33 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCC----CCC--CcHHHHHHHHHHcCCeEE
Q 014963 70 HFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNA----TFP--SGIKALADYVHSKGLKLG 143 (415)
Q Consensus 70 ~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~----~FP--~Gl~~l~~~i~~~Glk~G 143 (415)
++....|-+.+.+.++.+ +++|++.+.|=--+........|+...|.. .|- ++++.|++.+|++||++-
T Consensus 8 Q~~~~~tf~~~~~~L~YL-----~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vI 82 (825)
T TIGR02401 8 QLRAGFTFDDAAALLPYL-----KSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLI 82 (825)
T ss_pred eeCCCCCHHHHHHhhHHH-----HHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345567888999999998 778888887755454322223455443322 332 369999999999999966
Q ss_pred E
Q 014963 144 M 144 (415)
Q Consensus 144 i 144 (415)
+
T Consensus 83 l 83 (825)
T TIGR02401 83 V 83 (825)
T ss_pred E
Confidence 5
No 115
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=52.39 E-value=47 Score=31.72 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
-++.|.++++++|+.|. .+|+ -..-++.+.+.|++++|+=-.
T Consensus 57 ~~~~L~~~~~~~gi~f~--stpf--------------d~~s~d~l~~~~~~~~KIaS~ 98 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFF--STPF--------------DEESVDFLEELGVPAYKIASG 98 (241)
T ss_dssp HHHHHHHHHHHTT-EEE--EEE---------------SHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHcCCEEE--ECCC--------------CHHHHHHHHHcCCCEEEeccc
Confidence 37999999999999874 2332 234466778889999999653
No 116
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=52.21 E-value=40 Score=33.86 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCeE-EEEeeCC---ccccc---CC-CCChhHHHHHHHHHHHHcCCcEEEeecCCCC-CCCccchHHHHH
Q 014963 129 KALADYVHSKGLKL-GMYSSAG---YYTCS---KQ-MPGSLGYEEQDAKTFALWGVDYLKYDNCYTD-GSKPMDRYPIMT 199 (415)
Q Consensus 129 ~~l~~~i~~~Glk~-Giw~~pg---~~~c~---~~-~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~-~~~~~~~y~~~~ 199 (415)
...++..|+.|+|+ |.-+.+. ..+|. .. ..+.+.+.++.++..+.+|||++=+|+-... .....+++.++.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 57889999999994 3334332 22332 23 4667778899999999999999999996654 334466777777
Q ss_pred HHHHHc
Q 014963 200 RALMKA 205 (415)
Q Consensus 200 ~al~~~ 205 (415)
+.|++.
T Consensus 129 ~~L~~~ 134 (339)
T cd06547 129 RYLKAK 134 (339)
T ss_pred HHHHHH
Confidence 776544
No 117
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=51.95 E-value=1.3e+02 Score=29.12 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
+..+++.+|+.||-.-+|.-|-............+....-.+.=++.|.|.||.++-... ..|.+.+...+-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 788888999999999888876322110000011112222333446999999999997643 446666677788
Q ss_pred CEEEEe
Q 014963 208 PIYYSL 213 (415)
Q Consensus 208 ~i~~~~ 213 (415)
++++++
T Consensus 204 pVviaG 209 (265)
T COG1830 204 PVVIAG 209 (265)
T ss_pred CEEEeC
Confidence 887764
No 118
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=51.76 E-value=42 Score=36.93 Aligned_cols=94 Identities=24% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCcccCceEEEeCCCcccc-CCCCCCCee----ecCCCC--CC------cHHHHHHHHHHcCCeEEE-------------
Q 014963 91 GLSKLGYEYVNIDDCWGEQ-VRDENGNLQ----AKNATF--PS------GIKALADYVHSKGLKLGM------------- 144 (415)
Q Consensus 91 gl~~~G~~~~~IDdGW~~~-~~d~~G~~~----~~~~~F--P~------Gl~~l~~~i~~~Glk~Gi------------- 144 (415)
.||.+||+-|+|=..-+-. .....|+-. ....|| |+ -||.|+|.+|+.|+.+-|
T Consensus 263 hlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d 342 (757)
T KOG0470|consen 263 HLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKD 342 (757)
T ss_pred HHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCC
Confidence 3488899888886665541 112233222 223344 33 699999999999998543
Q ss_pred ------------EeeCCc-----ccccC----CCCChhHHHHHHHHH-HHHcCCcEEEeecC
Q 014963 145 ------------YSSAGY-----YTCSK----QMPGSLGYEEQDAKT-FALWGVDYLKYDNC 184 (415)
Q Consensus 145 ------------w~~pg~-----~~c~~----~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~ 184 (415)
|+..+. .||.. .+|.++.++-..++. +.|+.||++..|..
T Consensus 343 ~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ 404 (757)
T KOG0470|consen 343 GLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLV 404 (757)
T ss_pred cchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcch
Confidence 111110 14543 367788887666665 67999999999974
No 119
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=51.48 E-value=88 Score=35.72 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCeEEEEee-------------------CCcc------------c-ccC---CCCChhHHHHHHHHHH-
Q 014963 128 IKALADYVHSKGLKLGMYSS-------------------AGYY------------T-CSK---QMPGSLGYEEQDAKTF- 171 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~-------------------pg~~------------~-c~~---~~pg~~~~~~~~~~~~- 171 (415)
+|.|++.+|++||++-+=+- |+.+ + |.. .+|-++.++...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999654111 1100 1 211 2355677776666664
Q ss_pred HHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEecCCC
Q 014963 172 ALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 172 ~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
+++|||+|.+|-...- ..+-..++.+++++..+++++-+=.|.
T Consensus 486 ~ey~VDGFRfDlm~~~---~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHH---PKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhC---CHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 6899999999987643 234556777888888888888765564
No 120
>PRK03705 glycogen debranching enzyme; Provisional
Probab=51.17 E-value=88 Score=34.45 Aligned_cols=78 Identities=17% Similarity=0.337 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeeC---------C------------cc------------cccC----CCCChhHHHHHHHH
Q 014963 127 GIKALADYVHSKGLKLGMYSSA---------G------------YY------------TCSK----QMPGSLGYEEQDAK 169 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~p---------g------------~~------------~c~~----~~pg~~~~~~~~~~ 169 (415)
.+|.|++.+|++||++-|=+-. + .+ .|.. .+|.++.++...++
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 4999999999999996542110 0 00 1211 24667788777777
Q ss_pred HH-HHcCCcEEEeecCCCCCCCc-cchHHHHHHHHHH
Q 014963 170 TF-ALWGVDYLKYDNCYTDGSKP-MDRYPIMTRALMK 204 (415)
Q Consensus 170 ~~-~~wGvdyiK~D~~~~~~~~~-~~~y~~~~~al~~ 204 (415)
.+ .+.|||++.+|-...-+..+ ......+.++++.
T Consensus 323 ~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~ 359 (658)
T PRK03705 323 YWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQN 359 (658)
T ss_pred HHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhh
Confidence 65 57999999999865432211 1112346667664
No 121
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=50.99 E-value=46 Score=31.89 Aligned_cols=83 Identities=16% Similarity=0.076 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeCC---cccccCCCC-ChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAG---YYTCSKQMP-GSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALM 203 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg---~~~c~~~~p-g~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~ 203 (415)
+..-+..++++|+|.-|=+.-. .+.+....+ ....++....+.++++|+|+|=+|+-+... .+.|..+.++|+
T Consensus 61 ~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr 137 (256)
T cd06546 61 LWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLR 137 (256)
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHH
Confidence 5544567889999987744321 111110111 123456777788889999999999987532 357888888887
Q ss_pred Hc-CCCEEEEe
Q 014963 204 KA-GRPIYYSL 213 (415)
Q Consensus 204 ~~-g~~i~~~~ 213 (415)
+. ++..++..
T Consensus 138 ~~~~~~~~lT~ 148 (256)
T cd06546 138 SDFGPDFIITL 148 (256)
T ss_pred HHhCCCcEEEE
Confidence 65 45555543
No 122
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=50.90 E-value=23 Score=34.79 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcC--CeEEEEeeCCccc---c--cCCCCC-hhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHH
Q 014963 127 GIKALADYVHSKG--LKLGMYSSAGYYT---C--SKQMPG-SLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIM 198 (415)
Q Consensus 127 Gl~~l~~~i~~~G--lk~Giw~~pg~~~---c--~~~~pg-~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~ 198 (415)
.+..+.+.+|+++ +|+.|-+.-.... . .-..|. ...+++..++.++++|+|+|=+|+-+.......+.|..+
T Consensus 52 ~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~l 131 (299)
T cd02879 52 EFSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKL 131 (299)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHH
Confidence 3667777777654 6665544321110 0 001233 345678899999999999999999876543344567666
Q ss_pred HHHHH
Q 014963 199 TRALM 203 (415)
Q Consensus 199 ~~al~ 203 (415)
++.|+
T Consensus 132 l~elr 136 (299)
T cd02879 132 LEEWR 136 (299)
T ss_pred HHHHH
Confidence 66654
No 123
>PRK06852 aldolase; Validated
Probab=50.87 E-value=1.3e+02 Score=29.88 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
+..+++.+|+.||-.-+|.-|-..... .+..-+.+...++.-++.|.|+||+.++...+....+. |.+.....|+
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~---f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAEL---FKEAVLAAGR 230 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHH---HHHHHHhCCC
Confidence 788889999999999888876322111 11122355556666689999999999985322111233 4445555644
Q ss_pred -CEEEEe
Q 014963 208 -PIYYSL 213 (415)
Q Consensus 208 -~i~~~~ 213 (415)
++++.+
T Consensus 231 vpVviaG 237 (304)
T PRK06852 231 TKVVCAG 237 (304)
T ss_pred CcEEEeC
Confidence 566653
No 124
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.87 E-value=70 Score=31.46 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC--cc---------ccCCCCCCCeeecCCCCCCcHHHHHHHHHHc--
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDDC--WG---------EQVRDENGNLQAKNATFPSGIKALADYVHSK-- 138 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdG--W~---------~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-- 138 (415)
..|+++|.+.++.+++ +..+++|++-|.|-.+ +. +.+.|.+|--..+..+| +.++++.+++.
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~g 206 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAVG 206 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHcC
Confidence 4788888888877754 2446689999888764 21 22334555323333333 46778888764
Q ss_pred -CCeEEEEeeCCcccccCCCCC-hhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 139 -GLKLGMYSSAGYYTCSKQMPG-SLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 139 -Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
++.+++=+.+..... .| ..+-....++.+.+.|+|||.+-.-
T Consensus 207 ~d~~i~vris~~~~~~----~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 207 PDFPVGVRLSADDFVP----GGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred CCceEEEEechhccCC----CCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 455666555432110 11 1233456788889999999998653
No 125
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=49.73 E-value=44 Score=29.89 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
-+.+++.+|+.|+++-+|+-.. ....++++.++|||+|=.|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~--------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND--------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC--------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999998632 24567888999999998775
No 126
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=49.39 E-value=26 Score=33.91 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|+.|+++..|+-... -...++++.++|||+|=.|+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n-------------~~~~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNN-------------DAEAVERQADLGVDGVIVDH 281 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCC-------------CHHHHHHHHHcCCCEEEeCC
Confidence 5789999999999999974110 13457888999999998886
No 127
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=48.54 E-value=29 Score=33.29 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|+.|+++.+|+--. ...++++.+||||+|=.|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLND---------------EEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECC---------------HHHHHHHHhcCCCEEEeCCc
Confidence 679999999999999998521 34678899999999998874
No 128
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=48.33 E-value=35 Score=32.02 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+.+++.+|++|+++.+|+-- -...++++.++|||.|=.|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn---------------~~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIN---------------DLKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCC---------------CHHHHHHHHHcCCCEEEeCCCC
Confidence 68999999999999998641 1346888999999999999864
No 129
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=48.02 E-value=3e+02 Score=27.68 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccc
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTC 153 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 153 (415)
.++.+.+++.++.+ .+.|...|.+- -|.... -|+ +..++++++++|+++.|-++.- .
T Consensus 45 ~~~~e~~~~ii~~~-----~~~g~~~v~~~----------GGEPll----~~~-~~~il~~~~~~g~~~~i~TNG~-l-- 101 (378)
T PRK05301 45 ELSTEEWIRVLREA-----RALGALQLHFS----------GGEPLL----RKD-LEELVAHARELGLYTNLITSGV-G-- 101 (378)
T ss_pred CCCHHHHHHHHHHH-----HHcCCcEEEEE----------CCccCC----chh-HHHHHHHHHHcCCcEEEECCCc-c--
Confidence 46778888888887 44566666542 143333 344 8899999999998877654421 0
Q ss_pred cCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 154 SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 154 ~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
.-+..++.+++.|++.|.+..-.
T Consensus 102 ---------l~~~~~~~L~~~g~~~v~iSldg 124 (378)
T PRK05301 102 ---------LTEARLAALKDAGLDHIQLSFQD 124 (378)
T ss_pred ---------CCHHHHHHHHHcCCCEEEEEecC
Confidence 01345677888899887766543
No 130
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.76 E-value=3.1e+02 Score=27.30 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccc
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTC 153 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 153 (415)
.++.+.+++.++.+ +++|+..|.+- -|+.... |+ +..++++++++|+++.|-++ |.. .
T Consensus 36 ~l~~e~~~~ii~~~-----~~~g~~~v~~~----------GGEPll~----~~-~~~ii~~~~~~g~~~~l~TN-G~l-l 93 (358)
T TIGR02109 36 ELTTEEWTDVLTQA-----AELGVLQLHFS----------GGEPLAR----PD-LVELVAHARRLGLYTNLITS-GVG-L 93 (358)
T ss_pred CCCHHHHHHHHHHH-----HhcCCcEEEEe----------Ccccccc----cc-HHHHHHHHHHcCCeEEEEeC-Ccc-C
Confidence 47788888888887 44566666652 2443332 43 88999999999998887554 210 0
Q ss_pred cCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 154 SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 154 ~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
-+..++.+++.|++.|.+..-.
T Consensus 94 ----------~~e~~~~L~~~g~~~v~iSldg 115 (358)
T TIGR02109 94 ----------TEARLDALADAGLDHVQLSFQG 115 (358)
T ss_pred ----------CHHHHHHHHhCCCCEEEEeCcC
Confidence 1345677888899888776543
No 131
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=46.29 E-value=2e+02 Score=27.43 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-CCeEEEEeeCCcccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK-GLKLGMYSSAGYYTC 153 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c 153 (415)
+|++.+++..-.| ...||+-+.|-.|=.. .|+.-.+ + ++...++++++ |++.-.
T Consensus 39 vt~~~l~k~~~el-----~kkGy~g~llSGGm~s-----rg~VPl~--k----f~d~lK~lke~~~l~ina--------- 93 (275)
T COG1856 39 VTTKSLLKRCMEL-----EKKGYEGCLLSGGMDS-----RGKVPLW--K----FKDELKALKERTGLLINA--------- 93 (275)
T ss_pred cchHHHHHHHHHH-----HhcCceeEEEeCCcCC-----CCCccHH--H----HHHHHHHHHHhhCeEEEE---------
Confidence 6777777777777 4458898998655433 4543222 2 45555566553 555422
Q ss_pred cCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCC--------CCccchHHHHHHHHHHcCCCEEEEe
Q 014963 154 SKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDG--------SKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 154 ~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~--------~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
|-|... +.+++.+++-++|-+-+||..... ...++.|.+-.+.|.+.|..++.+.
T Consensus 94 ---HvGfvd--E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHi 156 (275)
T COG1856 94 ---HVGFVD--ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHI 156 (275)
T ss_pred ---Eeeecc--HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeE
Confidence 233333 678899999999999999997643 1346788888888998887776664
No 132
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=46.13 E-value=15 Score=33.52 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCC
Q 014963 127 GIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
-++.+++.+++.|.++|||....
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999864
No 133
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.86 E-value=1.2e+02 Score=29.32 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.++++|+.+++ +|..++-. +-+++ |.....|..-. ..|++.+.+++++.|+.+.- ++.
T Consensus 39 ~~~~~~~~A~~lk~-----~g~~~~r~--~~~kp-RTs~~s~~G~g---~~gl~~l~~~~~~~Gl~~~t--e~~------ 99 (266)
T PRK13398 39 SEEQMVKVAEKLKE-----LGVHMLRG--GAFKP-RTSPYSFQGLG---EEGLKILKEVGDKYNLPVVT--EVM------ 99 (266)
T ss_pred CHHHHHHHHHHHHH-----cCCCEEEE--eeecC-CCCCCccCCcH---HHHHHHHHHHHHHcCCCEEE--eeC------
Confidence 79999999999955 55554443 22222 33322232111 34899999999999998742 221
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
....++.+.+. +|++|+=-.... ...+.+++.+++.+++++
T Consensus 100 --------d~~~~~~l~~~-vd~~kIga~~~~-------n~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 100 --------DTRDVEEVADY-ADMLQIGSRNMQ-------NFELLKEVGKTKKPILLK 140 (266)
T ss_pred --------ChhhHHHHHHh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEe
Confidence 12234555666 788888543221 123444445555555554
No 134
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.80 E-value=36 Score=32.60 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++|+++.+|+ ++.. +. -...++++.++|||+|=.|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~n---------~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-ND---------NEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-CC---------CHHHHHHHHHcCCCEEEcCCH
Confidence 678999999999999997 2210 10 145677888999999998874
No 135
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=45.76 E-value=43 Score=28.90 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=36.5
Q ss_pred hhhccCCCCCCCceEEecccccCCCCC----HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCC
Q 014963 50 RNLLANGLGKSPPMGWNSWNHFWCDIN----EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFP 125 (415)
Q Consensus 50 ~~~~~~~~~~~pp~GWnsW~~~~~~i~----e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP 125 (415)
+...++|+.--|-..+......+..-. .+.-.+.+....+.|+++--.-||-|| +.-. .. ..+..--|
T Consensus 45 ~~i~~~Gl~i~pIyq~~~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gt~IYfavD--~d~~----~~--~~~~~i~~ 116 (136)
T PF08924_consen 45 QDIRAAGLRIFPIYQGGGRETSDFTYGYAQGVADARDAVAAARALGFPAGTPIYFAVD--YDAT----DA--ECDSAILP 116 (136)
T ss_dssp HHHHHTT-EEEEEE--------S-B--HHHHHHHHHHHHHHHHHTT--SS-EEEEE----TS-B-----H--H-------
T ss_pred HHHHHCCCEEEEEEecccccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEee--cCCC----ch--hhhhHHHH
Confidence 345556664444433332222222222 223334444445567766445799998 3221 01 11112223
Q ss_pred CcHHHHHHHHHHcCCeEEEE
Q 014963 126 SGIKALADYVHSKGLKLGMY 145 (415)
Q Consensus 126 ~Gl~~l~~~i~~~Glk~Giw 145 (415)
- ++.+.+.++..|.++|||
T Consensus 117 Y-~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 117 Y-FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp H-HHHHHHHHGGGT-EEEEE
T ss_pred H-HHHHHHHHhhCCCcceee
Confidence 3 899999999999999998
No 136
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=45.47 E-value=1.1e+02 Score=30.93 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.+++.|..+ ++.|+.++- .|.+.+ |.+...+.--. ..|++.|.+++++.|+.+-- ++.
T Consensus 130 ~~~~~~~~A~~l-----k~~g~~~~r--~~~~kp-Rtsp~~f~g~~---~e~l~~L~~~~~~~Gl~~~t--~v~------ 190 (360)
T PRK12595 130 SYEQVEAVAKAL-----KAKGLKLLR--GGAFKP-RTSPYDFQGLG---VEGLKILKQVADEYGLAVIS--EIV------ 190 (360)
T ss_pred CHHHHHHHHHHH-----HHcCCcEEE--ccccCC-CCCCccccCCC---HHHHHHHHHHHHHcCCCEEE--eeC------
Confidence 689999999998 556666554 455544 33322222111 14899999999999998742 221
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
....++.+.+. +|++|+=-
T Consensus 191 --------d~~~~~~l~~~-vd~lkI~s 209 (360)
T PRK12595 191 --------NPADVEVALDY-VDVIQIGA 209 (360)
T ss_pred --------CHHHHHHHHHh-CCeEEECc
Confidence 23345667778 99999864
No 137
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=45.36 E-value=54 Score=31.66 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.4
Q ss_pred HHHHHHHHHc-CCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSK-GLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~-Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++ |+++-.|+-- -...++.+.+||||.|=.|+-
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN---------------~~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGIN---------------TADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeC---------------CHHHHHHHHHcCCCEEEeCCc
Confidence 7889999999 9999999862 124678899999999998873
No 138
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=45.26 E-value=79 Score=30.93 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc---cc-----ccCCCCChh-HHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGY---YT-----CSKQMPGSL-GYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIM 198 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~---~~-----c~~~~pg~~-~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~ 198 (415)
...+++.+|++|+|.-+-+.-.. .. ..-..|..+ .+++..++.++++|+|+|-+|+-+... ...+.|..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~f 125 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQF 125 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHH
Confidence 46889999999999776654211 00 001123333 467889999999999999999976532 234567777
Q ss_pred HHHHHHc
Q 014963 199 TRALMKA 205 (415)
Q Consensus 199 ~~al~~~ 205 (415)
.+.|++.
T Consensus 126 l~~lr~~ 132 (313)
T cd02874 126 LRELSDR 132 (313)
T ss_pred HHHHHHH
Confidence 7766543
No 139
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=45.03 E-value=35 Score=30.76 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=30.7
Q ss_pred cEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceE-----EEEECCCcEEEEEE
Q 014963 348 RFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNL-----SANLDPHTCKMYLL 411 (415)
Q Consensus 348 ~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l-----~~~l~ph~~~ll~l 411 (415)
+-.|.+||.+.++++++++ ++. .++++.+-....-....+..+ +++||++.+++|.-
T Consensus 105 ~~iVVvfNat~~~~t~~~~----~~~---g~~Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 105 DGIVVVFNATPEEQTFTVP----GLA---GFQLHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp EEEEEEEE-SSS-EEEETG----GGS---S-EE-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred CeEEEEEeCCCCeEEEEcC----CcC---ceEechHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 4579999999888877766 222 156665543211000111122 68999999999864
No 140
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=1.4e+02 Score=29.55 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeee-cC----------CCCCCcHHHHHHHHHHcCCeEEE-
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQA-KN----------ATFPSGIKALADYVHSKGLKLGM- 144 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~-~~----------~~FP~Gl~~l~~~i~~~Glk~Gi- 144 (415)
...+-+..+.+ ++.+++.|+|| --|.+|.++. .. .+|-+ |++++++++++|+-.--
T Consensus 76 kk~~de~fk~i-----kdn~~Na~ViD------~Kdd~G~lty~s~d~~~~~~~sv~~f~D-i~~~iKkaKe~giY~IAR 143 (400)
T COG1306 76 KKRLDELFKLI-----KDNNINAFVID------VKDDYGELTYPSSDEINKYTKSVNKFKD-IEPVIKKAKENGIYAIAR 143 (400)
T ss_pred hhHHHHHHHHH-----HhCCCCEEEEE------ecCCCccEeccccchhhhhhhccccccc-cHHHHHHHHhcCeEEEEE
Confidence 34444555555 66778899998 2455676642 22 23445 89999999999864211
Q ss_pred ----------EeeCCc--------c-----------------cccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 145 ----------YSSAGY--------Y-----------------TCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 145 ----------w~~pg~--------~-----------------~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+.+|+- . |...+.|.+.+|--..++..++.|||=|..|+..
T Consensus 144 iVvFKD~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYIR 219 (400)
T COG1306 144 IVVFKDTILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYIR 219 (400)
T ss_pred EEEeeeeeEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEEE
Confidence 111110 0 1112234455555567778889999999999863
No 141
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.66 E-value=2.6e+02 Score=26.63 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-CCeEEEEeeCCcccccCC
Q 014963 78 DIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK-GLKLGMYSSAGYYTCSKQ 156 (415)
Q Consensus 78 ~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c~~~ 156 (415)
..+.+.++.+ +++||+++.|+-+.... ......+ +..++.+.+.+.+. |+.+.+........+..
T Consensus 10 ~~l~~~l~~a-----~~~G~d~vEl~~~~~~~----~~~~~~~----~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~- 75 (279)
T cd00019 10 FGLENALKRA-----KEIGFDTVAMFLGNPRS----WLSRPLK----KERAEKFKAIAEEGPSICLSVHAPYLINLASP- 75 (279)
T ss_pred ccHHHHHHHH-----HHcCCCEEEEEcCCCCc----cCCCCCC----HHHHHHHHHHHHHcCCCcEEEEcCceeccCCC-
Confidence 4566777777 66788888775332211 0000001 23589999999998 77766532110111111
Q ss_pred CCCh----hHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHH-------HHcCCCEEEEecC
Q 014963 157 MPGS----LGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRAL-------MKAGRPIYYSLCE 215 (415)
Q Consensus 157 ~pg~----~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al-------~~~g~~i~~~~c~ 215 (415)
.|.. .+++...++..++.|.+++-+..-........+.+..+.+.+ ++.|-.+.++.+.
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 1222 334567777788999999987443222222233444333333 2455566666543
No 142
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=44.01 E-value=22 Score=32.33 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceE-EEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCC
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEY-VNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~-~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
.+.+.-.++|+.+.+. ++..+-.+ ++||=..... .....+....-.-++.+++.+++.|.+++||..+.
T Consensus 67 ~~~~~a~~qA~~f~~~-~~~~~~~~~~~lD~E~~~~-----~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 67 VTVAEAREEAEFVLRL-IKGYKLSYPVYYDLEDETQ-----LGAGLSKDQRTDIANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred CCHHHHHHHHHHHHHH-hhccCCCCCeEEEeecCCC-----CCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEecHH
Confidence 4555566777776553 33334332 4566333221 11111111222347999999999999999999853
No 143
>PLN03244 alpha-amylase; Provisional
Probab=43.77 E-value=82 Score=35.35 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHcCCeEEEEee-----CCc----------c--------------c-cc---CCCCChhHHHHHHHHH-
Q 014963 125 PSGIKALADYVHSKGLKLGMYSS-----AGY----------Y--------------T-CS---KQMPGSLGYEEQDAKT- 170 (415)
Q Consensus 125 P~Gl~~l~~~i~~~Glk~Giw~~-----pg~----------~--------------~-c~---~~~pg~~~~~~~~~~~- 170 (415)
|+.||.|||.+|++|+++-|=+- +.. . | |. ..+|.++.++-..++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 56799999999999998654211 110 0 0 00 1246688887666665
Q ss_pred HHHcCCcEEEeecC
Q 014963 171 FALWGVDYLKYDNC 184 (415)
Q Consensus 171 ~~~wGvdyiK~D~~ 184 (415)
+.+.+||++.+|..
T Consensus 520 leEyhIDGFRfDaV 533 (872)
T PLN03244 520 ITEYQIDGFQFHSL 533 (872)
T ss_pred HHHhCcCcceeecc
Confidence 67999999999965
No 144
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=43.74 E-value=74 Score=32.45 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCC---Cc---------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDD---CW---------GEQVRDENGNLQAKNATFPSGIKALADYVHSK- 138 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDd---GW---------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~- 138 (415)
..|+++|.+.++.+++ ...+++|++-|.|=. || .+.+.|++|-=..++.||+ .++++.|++.
T Consensus 139 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~---~eii~~vr~~~ 215 (382)
T cd02931 139 ELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFA---IEIVEEIKARC 215 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHH---HHHHHHHHHhc
Confidence 4788888888877753 233568999999976 77 3334566764444555554 5777777764
Q ss_pred --CCeEEEEeeCCcccccC---CCC------Ch--hHHHHHHHHHHHHcCCcEEEee
Q 014963 139 --GLKLGMYSSAGYYTCSK---QMP------GS--LGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 139 --Glk~Giw~~pg~~~c~~---~~p------g~--~~~~~~~~~~~~~wGvdyiK~D 182 (415)
++.+|+=+.+..+.+.. ..| +. .+.....++.+.+.|+|||-+-
T Consensus 216 g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 216 GEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred CCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 45677666542111110 001 11 1222356667777788887664
No 145
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=43.48 E-value=58 Score=32.69 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=59.0
Q ss_pred CCCceEEecccccCCC-------CCHHHHHHHHHHHHHcCCcccC-ceEEEeCCCccccCCCCCCCeeecCCCCCCcHHH
Q 014963 59 KSPPMGWNSWNHFWCD-------INEDIVKAAADALVSSGLSKLG-YEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 59 ~~pp~GWnsW~~~~~~-------i~e~~i~~~ad~l~~~gl~~~G-~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~ 130 (415)
=++.++||+-...+.. .+.+.|++.|..+ ++.| .++..+ .+|.+. | ..++. +..
T Consensus 61 c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~a-----k~~Ga~r~c~~-aagr~~-----~------~~~~~-i~~ 122 (335)
T COG0502 61 CPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKA-----KAAGATRFCMG-AAGRGP-----G------RDMEE-VVE 122 (335)
T ss_pred CCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHH-----HHcCCceEEEE-EeccCC-----C------ccHHH-HHH
Confidence 4778899998765532 6899999999998 6667 444444 566531 1 22333 777
Q ss_pred HHHHHH-HcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEe
Q 014963 131 LADYVH-SKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKY 181 (415)
Q Consensus 131 l~~~i~-~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~ 181 (415)
+++.++ ..|++. +.+.|. .-+..++.+++.|+|++-+
T Consensus 123 ~v~~Vk~~~~le~--c~slG~------------l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 123 AIKAVKEELGLEV--CASLGM------------LTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHHHhcCcHH--hhccCC------------CCHHHHHHHHHcChhheec
Confidence 777777 667653 222221 1134578899999999866
No 146
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=43.48 E-value=41 Score=34.36 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcc-c---ccCCC--CCh-hHH-HHHHHHH-----HH-HcCCcEEEeecCCCCC-CCcc
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYY-T---CSKQM--PGS-LGY-EEQDAKT-----FA-LWGVDYLKYDNCYTDG-SKPM 192 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~-~---c~~~~--pg~-~~~-~~~~~~~-----~~-~wGvdyiK~D~~~~~~-~~~~ 192 (415)
++.+++.+++.||.||||+.-... | ..... +.. +.| +.+..+. +. --++|=+-+|+.-... ...+
T Consensus 103 vgela~Avr~qGL~FGvy~s~a~h~W~~~~g~~~~~d~~dp~y~~~~~~~~~~~~~~~~~~~~d~~~~dnaw~~~~~~~~ 182 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGAWHPWDFHSGYYADSDEKDPNYYLAQLQELLSGANYGNAGPFDEVWLDNAWGNGPAKVN 182 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccCcccccccCCccccccccCcccccccHHHHhcccccccCCCCcchhhcccccCChHHHH
Confidence 789999999999999999983211 1 10000 000 001 1111111 11 1244555555443321 1234
Q ss_pred chHHHHHHHHHHcCCCEEEEecCCC
Q 014963 193 DRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 193 ~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
..+.+..+.+++..+++++- ..||
T Consensus 183 ~wl~r~~e~i~~y~P~~vyF-d~wg 206 (430)
T COG3669 183 YWLARWFELIRRYQPDLVYF-DWWG 206 (430)
T ss_pred HHHHHHHHHHHhhCCCeEEe-cchh
Confidence 45667888888888887764 3454
No 147
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=42.60 E-value=1.8e+02 Score=28.94 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCC-----
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAG----- 149 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg----- 149 (415)
.+.+.+.++|+.++| .|++-++|. +-+....... ..+-.+++.|++-.+..|+|..|=++..
T Consensus 54 ~~~~R~~~YARllAS-----iGINgvvlN------NVNa~~~~Lt--~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~l 120 (328)
T PF07488_consen 54 RDLTRYRDYARLLAS-----IGINGVVLN------NVNANPKLLT--PEYLDKVARLADVFRPYGIKVYLSVNFASPIEL 120 (328)
T ss_dssp S--HHHHHHHHHHHH-----TT--EEE-S-------SS--CGGGS--TTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHT
T ss_pred cchhHHHHHHHHHhh-----cCCceEEec------ccccChhhcC--HHHHHHHHHHHHHHhhcCCEEEEEeeccCCccc
Confidence 467899999999955 466777775 2222332222 3445579999999999999998876632
Q ss_pred --cccccCCCCChhHHHHHHHHHHH----HcCCcEEEeecCCCCCC-----CccchHHHHHHHHHHcCC
Q 014963 150 --YYTCSKQMPGSLGYEEQDAKTFA----LWGVDYLKYDNCYTDGS-----KPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 150 --~~~c~~~~pg~~~~~~~~~~~~~----~wGvdyiK~D~~~~~~~-----~~~~~y~~~~~al~~~g~ 207 (415)
..+..+-.|.+..|.+..++.+. +.|==.||.|--+..+. +..+.-.-+.+||+-.|.
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~YgRthAdGANmlA~Al~P~GG 189 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYGRTHADGANMLARALKPHGG 189 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT--HHHHHHHHHHHHGGGT-
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccCCCchhhHHHHHHHhhccCC
Confidence 23455556889999866555543 44444577765544332 223334456677766664
No 148
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=42.34 E-value=55 Score=29.96 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHH----HHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPI----MTRALM 203 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~----~~~al~ 203 (415)
++.+.+.+++.|++++| +-. +.-...+..+.++.+||||+|..........+.+.. +.+..+
T Consensus 134 ~~~~~~~l~~~G~~l~l--d~~------------g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 134 ALATLRRLRALGVRIAL--DDF------------GTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHCCCeEEE--eCC------------CCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 78899999999999776 210 001223567888999999999754322222223333 333345
Q ss_pred HcCCCEEEEecC
Q 014963 204 KAGRPIYYSLCE 215 (415)
Q Consensus 204 ~~g~~i~~~~c~ 215 (415)
..+..++.++..
T Consensus 200 ~~~~~via~gVe 211 (240)
T cd01948 200 SLGLKVVAEGVE 211 (240)
T ss_pred HCCCeEEEEecC
Confidence 567777777654
No 149
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=41.95 E-value=51 Score=32.54 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=75.8
Q ss_pred CCChhH----HHHHHHHHHHHcCCc-EEEeecCCCCCCC------ccchHHHHHHHHHHcCCCEEEEecCCCCCCcCccc
Q 014963 157 MPGSLG----YEEQDAKTFALWGVD-YLKYDNCYTDGSK------PMDRYPIMTRALMKAGRPIYYSLCEWGDMHPALWG 225 (415)
Q Consensus 157 ~pg~~~----~~~~~~~~~~~wGvd-yiK~D~~~~~~~~------~~~~y~~~~~al~~~g~~i~~~~c~~g~~~p~~~~ 225 (415)
.||+.- |=..+-.++.+|-.+ +||.=..++...+ ..+...++.++.+++|..+++++-. +...|.. .
T Consensus 116 ~pgSrPL~fE~G~digs~L~~WP~ehvVKcLvfyHPdD~~~lr~~Qe~~l~~l~~ac~~sg~ElLLEvI~-p~~~~~~-~ 193 (311)
T PF09863_consen 116 LPGSRPLRFEHGRDIGSQLIEWPQEHVVKCLVFYHPDDDPELRLEQEAQLRRLYDACRRSGHELLLEVIP-PKDMPVD-D 193 (311)
T ss_pred cCCCCceeeecCcCHHHHHHhCCcccEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcceeEEEec-CCCCCCC-h
Confidence 477643 224566779999886 9998877665432 3445668899999999999999632 2222211 1
Q ss_pred ccccce-Eee-cCCCCCchhhHHHHHHHhhhhhhccCCCCCCCCCc---cccCCCCCCHHHHHHHHHHHHHHcCcccccc
Q 014963 226 FQVGNS-WRT-TGDITDTFESVMSRADANEVYADYARPGGWNDPDM---LEVGNGGMTKDEYIIHFSLWAISKAPLLLGC 300 (415)
Q Consensus 226 ~~~~~~-~R~-s~D~~~~w~~~~~~~~~~~~~~~~~~~~~~~DpD~---l~vg~~~lt~~E~r~~~~~~a~~gspL~is~ 300 (415)
..+..+ -|+ .-.+.|.|..+... ....|........=+||.+ +++ |++..+.+..-.|.+..+.|+.-|-
T Consensus 194 ~~~~~ai~r~Y~lGI~PDWWKLep~--s~~~W~~i~~~I~~~Dp~crGvVvL---GLdAP~e~L~~~F~~Aa~~p~vkGF 268 (311)
T PF09863_consen 194 DTYARAIERFYNLGIKPDWWKLEPL--SAAAWQAIEALIEERDPYCRGVVVL---GLDAPEEELAAGFAAAAGSPLVKGF 268 (311)
T ss_pred HHHHHHHHHHHHcCCCCCeeccCCC--CHHHHHHHHHHHHHhCCCceeEEEe---cCCCCHHHHHHHHHHhhCCCceeee
Confidence 112211 111 12344444433222 1112222111111256655 334 3555666666677778888887775
Q ss_pred CC
Q 014963 301 DV 302 (415)
Q Consensus 301 Dl 302 (415)
=+
T Consensus 269 AV 270 (311)
T PF09863_consen 269 AV 270 (311)
T ss_pred ee
Confidence 44
No 150
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=41.82 E-value=93 Score=30.78 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=52.8
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQD 167 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~ 167 (415)
.++|.+.++|+|.|.... . ..++-| |. ++.+++.+|++ .+.|+++ +. ....
T Consensus 190 ~~aGad~I~i~d~~a~~~------~-lsp~~f~ef~~p~-~~~i~~~i~~~--~~ilH~c------G~--------~~~~ 245 (339)
T PRK06252 190 LEAGADVICIADPSASPE------L-LGPKMFEEFVLPY-LNKIIDEVKGL--PTILHIC------GD--------LTSI 245 (339)
T ss_pred HHcCCCEEEeCCCCcccc------c-cCHHHHHHHHHHH-HHHHHHHhccC--CcEEEEC------CC--------chHH
Confidence 567999999999987521 1 111112 33 78999999876 4445443 21 1345
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 168 AKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 168 ~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
++.+.+.|+|-+-+|+.. .+.++.+..|..+.+.+
T Consensus 246 l~~~~~~g~d~~~~d~~~-----------dl~~~~~~~g~~~~i~G 280 (339)
T PRK06252 246 LEEMADCGFDGISIDEKV-----------DVKTAKENVGDRAALIG 280 (339)
T ss_pred HHHHHhcCCCeeccCCCC-----------CHHHHHHHhCCCeEEEe
Confidence 677888999998887653 13344445555565543
No 151
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=41.27 E-value=74 Score=29.07 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccch----HHHHHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDR----YPIMTRALM 203 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~----y~~~~~al~ 203 (415)
....++.+++.|+++.| +-.. .| ...+..+....+||||+|..........+. ...+.+..+
T Consensus 135 ~~~~i~~l~~~G~~ial--ddfg-------~~-----~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 200 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DDFG-------TG-----YSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ 200 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eCCC-------Cc-----HHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH
Confidence 55888999999988754 3110 11 123567788899999999754322211122 223444445
Q ss_pred HcCCCEEEEecC
Q 014963 204 KAGRPIYYSLCE 215 (415)
Q Consensus 204 ~~g~~i~~~~c~ 215 (415)
..|..++.++.+
T Consensus 201 ~~~~~via~gVe 212 (241)
T smart00052 201 KLGLQVVAEGVE 212 (241)
T ss_pred HCCCeEEEecCC
Confidence 667777777543
No 152
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.69 E-value=86 Score=31.40 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-C
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDDCW-----------GEQVRDENGNLQAKNATFPSGIKALADYVHSK-G 139 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdGW-----------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-G 139 (415)
..|+++|.+.++.+++ ...+++|++-|.|=.+- .+.+.|.+|-=..+..||+ .++++.|++. +
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~---~eii~~ir~~~~ 207 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFL---REIIDAVKEVWD 207 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHH---HHHHHHHHHhcC
Confidence 5889998888887754 24466899999987762 2223455653244455554 4677777765 4
Q ss_pred CeEEEEeeCCcccccCCCCC-hhHHHHHHHHHHHHcCCcEEEeec
Q 014963 140 LKLGMYSSAGYYTCSKQMPG-SLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 140 lk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++=+.+.-. . ..| ..+-....++.+.+.|+|||-+-.
T Consensus 208 ~~v~vRis~~d~-~---~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 208 GPLFVRISASDY-H---PGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCeEEEeccccc-C---CCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 556665554211 1 012 122234566778888888888754
No 153
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=40.41 E-value=1.5e+02 Score=29.06 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCC
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQ 156 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~ 156 (415)
++.+++.+..+++ . -++.|+=|=|+.. +...+..--...|- -....+..+|++|+|+--.+-.|
T Consensus 128 pd~VldlL~e~~~-----r--~~vWvELGLQT~h-~~Tlk~iNRgHd~~-~y~dav~r~rkrgIkvc~HiI~G------- 191 (312)
T COG1242 128 PDDVLDLLAEYNK-----R--YEVWVELGLQTAH-DKTLKRINRGHDFA-CYVDAVKRLRKRGIKVCTHLING------- 191 (312)
T ss_pred cHHHHHHHHHHhh-----h--eEEEEEeccchhh-HHHHHHHhcccchH-HHHHHHHHHHHcCCeEEEEEeeC-------
Confidence 5666677666643 1 3677777877752 11110000001111 15666778889999986655443
Q ss_pred CCC-hhHHHHHHHHHHHHcCCcEEEeecCCCC-CC-----------C--ccchHH-HHHHHHHHcCCCEEEEe
Q 014963 157 MPG-SLGYEEQDAKTFALWGVDYLKYDNCYTD-GS-----------K--PMDRYP-IMTRALMKAGRPIYYSL 213 (415)
Q Consensus 157 ~pg-~~~~~~~~~~~~~~wGvdyiK~D~~~~~-~~-----------~--~~~~y~-~~~~al~~~g~~i~~~~ 213 (415)
.|| ..+-+-..++.+++.||+.||+--..-- +. . ..+.|. ...+.|+..-|.|+|+-
T Consensus 192 LPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHR 264 (312)
T COG1242 192 LPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHR 264 (312)
T ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEEE
Confidence 265 3444556778899999999999976431 11 0 123444 46677777788888873
No 154
>PRK08227 autoinducer 2 aldolase; Validated
Probab=40.19 E-value=2.2e+02 Score=27.54 Aligned_cols=71 Identities=17% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
+..+++.+|+.||-.-+|+..|..- ......+...++.=+|.|.|.||+.++. ..|.+.+....-
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~~-----~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~v 193 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKDM-----VRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPV 193 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCc-----CchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCC
Confidence 7888999999999877766433211 1122355656666689999999999972 235555555556
Q ss_pred CEEEEe
Q 014963 208 PIYYSL 213 (415)
Q Consensus 208 ~i~~~~ 213 (415)
++++.+
T Consensus 194 PVviaG 199 (264)
T PRK08227 194 PIVIAG 199 (264)
T ss_pred cEEEeC
Confidence 777654
No 155
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.35 E-value=1.4e+02 Score=29.87 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-C
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDDCW-----------GEQVRDENGNLQAKNATFPSGIKALADYVHSK-G 139 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdGW-----------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-G 139 (415)
..|++.|.+.++.+++ ...+++|++-|.|-.+- .+.+.|.+|-=..++.|| +..+++.|++. |
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~vg 217 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAIG 217 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHhC
Confidence 4788888888777754 24466899999987553 233346665334455565 45777777764 5
Q ss_pred C-eEEEEeeCCcccccCCCCC-hhHHHHHHHHHHHHcCCcEEEee
Q 014963 140 L-KLGMYSSAGYYTCSKQMPG-SLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 140 l-k~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
- .+|+=+.+.-+ -.....| ..+-....++.+.+.|+|||-+-
T Consensus 218 ~d~v~vRis~~~~-~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 218 ADRVGIRLSPFGT-FNDMGDSDPEATFSYLAKELNKRGLAYLHLV 261 (338)
T ss_pred CCceEEEECcccc-CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4 34444443211 0000001 12223457777888899998873
No 156
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=39.01 E-value=58 Score=32.15 Aligned_cols=92 Identities=13% Similarity=0.255 Sum_probs=52.3
Q ss_pred CCCCcHHHHHHHHHHc--CCeEEEEeeCCccc--c--cCCCCCh-hHHHHHHHHHHHHcCCcEEEeecCCCCC-------
Q 014963 123 TFPSGIKALADYVHSK--GLKLGMYSSAGYYT--C--SKQMPGS-LGYEEQDAKTFALWGVDYLKYDNCYTDG------- 188 (415)
Q Consensus 123 ~FP~Gl~~l~~~i~~~--Glk~Giw~~pg~~~--c--~~~~pg~-~~~~~~~~~~~~~wGvdyiK~D~~~~~~------- 188 (415)
.-++.++.+.. ++++ ++|+-|-+...... . .-..+.. ..+++..++.++++|+|+|=+|+-+...
T Consensus 67 ~~~~~~~~~~~-lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~ 145 (322)
T cd06548 67 PLKGNFGQLRK-LKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNV 145 (322)
T ss_pred cchhHHHHHHH-HHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCC
Confidence 33445666653 4443 57766655421110 0 0011332 3467889999999999999999986542
Q ss_pred --CCccchHHHHHHHHH----Hc----CCCEEEEecC
Q 014963 189 --SKPMDRYPIMTRALM----KA----GRPIYYSLCE 215 (415)
Q Consensus 189 --~~~~~~y~~~~~al~----~~----g~~i~~~~c~ 215 (415)
....+.|..+.+.|+ +. +++..++.+.
T Consensus 146 ~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 146 ARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 123456666666654 32 3456666543
No 157
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=38.99 E-value=1.7e+02 Score=29.03 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCee--ecCCCCCCcHHHHHHHHHHcCCeEEE-------EeeCCcc
Q 014963 81 KAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQ--AKNATFPSGIKALADYVHSKGLKLGM-------YSSAGYY 151 (415)
Q Consensus 81 ~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~--~~~~~FP~Gl~~l~~~i~~~Glk~Gi-------w~~pg~~ 151 (415)
++....| +.+|++|+-|- =|.++ +|++|.-. -+.+ -.+.-+++++.+..|||.-+ |.+|+.+
T Consensus 66 qD~~~iL-----K~~GvNyvRlR-vwndP-~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ 136 (403)
T COG3867 66 QDALQIL-----KNHGVNYVRLR-VWNDP-YDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ 136 (403)
T ss_pred HHHHHHH-----HHcCcCeEEEE-EecCC-ccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc
Confidence 3445555 67788888774 57665 44443211 0000 01367889999999999876 3334322
Q ss_pred cccC---------CCCChhHHHHHHHHHHHHcCC--cEEEeecC
Q 014963 152 TCSK---------QMPGSLGYEEQDAKTFALWGV--DYLKYDNC 184 (415)
Q Consensus 152 ~c~~---------~~pg~~~~~~~~~~~~~~wGv--dyiK~D~~ 184 (415)
--.. -...+++|-+..+++|+.-|| |+|.+-+-
T Consensus 137 ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNE 180 (403)
T COG3867 137 KKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNE 180 (403)
T ss_pred CCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccc
Confidence 1100 011245555677888988886 45666553
No 158
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=38.92 E-value=1e+02 Score=30.06 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=45.1
Q ss_pred CcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHH-cCCeEEEEeeCCcccccCCCCChhHHHHHHHHH
Q 014963 92 LSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHS-KGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKT 170 (415)
Q Consensus 92 l~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~-~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~ 170 (415)
|.++|.++++||+--..... .+ .....| -++.+.+.+++ .|..++|+++ .. .....
T Consensus 160 l~~~G~~~iqidEP~l~~~~--~s----~~~~~~-~~~~~~~~~~~~~~~~~~lHic------~~----------~~~~~ 216 (321)
T cd03310 160 LKNRGIVVVQIDEPSLGAVG--AG----AFEDLE-IVDAALEEVSLKSGGDVEVHLC------AP----------LDYEA 216 (321)
T ss_pred HHhcCCcEEEeCCCcccccc--cc----ccchHH-HHHHHHHHHhhccCCceEEEEC------CC----------CCHHH
Confidence 57789999999986544311 11 000111 26777777775 4445566544 22 23456
Q ss_pred HHHcCCcEEEeecCCCC
Q 014963 171 FALWGVDYLKYDNCYTD 187 (415)
Q Consensus 171 ~~~wGvdyiK~D~~~~~ 187 (415)
+.+.|+|.|-+|++...
T Consensus 217 l~~~~vd~l~~D~~~~~ 233 (321)
T cd03310 217 LLELGVDVIGFDAAALP 233 (321)
T ss_pred HHhCCCCEEEEecccCc
Confidence 77889999999998653
No 159
>PLN02801 beta-amylase
Probab=38.88 E-value=53 Score=34.64 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLG 143 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 143 (415)
.+.+.+..++.+| |.+|++=|.+|-=|-.-++.+.+..... |-+.|++-+++.|||+=
T Consensus 34 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~P~~YdWs------gY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 34 EDEEGLEKQLKRL-----KEAGVDGVMVDVWWGIVESKGPKQYDWS------AYRSLFELVQSFGLKIQ 91 (517)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCccCcH------HHHHHHHHHHHcCCeEE
Confidence 4678888999988 7788999999865544444444433222 68999999999999964
No 160
>PLN02803 beta-amylase
Probab=38.33 E-value=53 Score=34.87 Aligned_cols=59 Identities=29% Similarity=0.368 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+.+.+..++.+| |.+|++=|.||-=|---++.+.+.... +|-+.|++-+++.|||+=.
T Consensus 104 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 104 NKPRAMNASLMAL-----RSAGVEGVMVDAWWGLVEKDGPMKYNW------EGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 3568888899888 778999999986554444433333222 2789999999999999643
No 161
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=38.18 E-value=1.9e+02 Score=26.25 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=58.9
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA 172 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 172 (415)
+..|++++.|-. .+. .|. .|+ -++.-.+.+++.||+.|+|+-+-...+ ....+-.+..++.++
T Consensus 19 k~~g~~fv~ika-teg-----~~~--~D~-----~f~~n~~~A~~aGl~~G~Yhf~~~~~~----~~~~~Qa~~f~~~~~ 81 (196)
T cd06416 19 KNNGYSFAIIRA-YRS-----NGS--FDP-----NSVTNIKNARAAGLSTDVYFFPCINCC----GSAAGQVQTFLQYLK 81 (196)
T ss_pred HhCCceEEEEEE-Ecc-----CCc--cCh-----HHHHHHHHHHHcCCccceEEEecCCCC----CCHHHHHHHHHHHHH
Confidence 556788888863 221 222 343 378888999999999999987521111 123444566667777
Q ss_pred HcCCc--EEEeecCCCCCC---C---ccchHHHHHHHHHHcCCCEEE
Q 014963 173 LWGVD--YLKYDNCYTDGS---K---PMDRYPIMTRALMKAGRPIYY 211 (415)
Q Consensus 173 ~wGvd--yiK~D~~~~~~~---~---~~~~y~~~~~al~~~g~~i~~ 211 (415)
..+.+ .|-+|.-..... + ..+....+.+.+++.|....|
T Consensus 82 ~~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~i 128 (196)
T cd06416 82 ANGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGI 128 (196)
T ss_pred hCCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 76665 455776432111 1 112334677777777764433
No 162
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.17 E-value=1.8e+02 Score=27.67 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcccccCCCCC------hhHHHHHHHHHHHHcCCcEEEe
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYTCSKQMPG------SLGYEEQDAKTFALWGVDYLKY 181 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg------~~~~~~~~~~~~~~wGvdyiK~ 181 (415)
.++.+.+.+++.|+++.-...++........|. ..++.+..++.-+..|+++|.+
T Consensus 53 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 53 ERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 489999999999999753221111101111122 2344566777788999999987
No 163
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=37.96 E-value=1e+02 Score=30.48 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEeCCC-ccccCCCCCCCeeecCCCCCCcHHHHHHHHHH--cCCeEEEEeeCCcc
Q 014963 77 EDIVKAAADALVS--SGLSKLGYEYVNIDDC-WGEQVRDENGNLQAKNATFPSGIKALADYVHS--KGLKLGMYSSAGYY 151 (415)
Q Consensus 77 e~~i~~~ad~l~~--~gl~~~G~~~~~IDdG-W~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~--~Glk~Giw~~pg~~ 151 (415)
++.+.+.++++.+ .-|.++|+++++||+- |... .+.. .. +..-.-++.+.+.+++ .+++.++++..|..
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~-~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~ 220 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALAEG-LPLE----PD-DLAADYLKWANEALADRPDDTQIHTHICYGNF 220 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhcc-CCcc----cH-HHHHHHHHHHHHHHHhCCCCCEEEEEEECCCC
Confidence 3455555554433 2457789999999985 3321 1110 00 0001135667777775 25778888776543
Q ss_pred cccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 152 TCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 152 ~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
.-.....| -|+..+..+.+.++|.|-+|+...
T Consensus 221 ~~~~~~~~---~y~~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 221 RSTWAAEG---GYEPIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred cccccccC---cHHHHHHHHHhCCCCEEEEEEcCC
Confidence 21111122 245567888888899999999754
No 164
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=37.56 E-value=81 Score=29.85 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=.|.-.
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~---------------~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND---------------PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHcCCCEEEeCChH
Confidence 689999999999999997421 235778899999999999743
No 165
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.88 E-value=82 Score=29.82 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++|+++..|+--. ...++++.++|||+|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE---------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 689999999999999997411 34567888999999998874
No 166
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=36.64 E-value=83 Score=29.01 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND---------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCC
Confidence 579999999999999995411 2457788899999998885
No 167
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=36.59 E-value=1e+02 Score=31.21 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=59.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHc--CCcccCceEEEeCCCccccCCCCCCCe-eecCCCCCCcHH-HHHHHH----HHc--C
Q 014963 70 HFWCDINEDIVKAAADALVSS--GLSKLGYEYVNIDDCWGEQVRDENGNL-QAKNATFPSGIK-ALADYV----HSK--G 139 (415)
Q Consensus 70 ~~~~~i~e~~i~~~ad~l~~~--gl~~~G~~~~~IDdGW~~~~~d~~G~~-~~~~~~FP~Gl~-~l~~~i----~~~--G 139 (415)
.+|.+ .++.+.+.|+++.+. .|.++|++||+||+--.....+..++- ......-|+.+. ..++.+ ... +
T Consensus 156 ~~Y~~-~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d 234 (368)
T PRK06520 156 TVYPD-LDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPAD 234 (368)
T ss_pred hcCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 34433 356666666666542 567899999999998643211111100 000000122222 112222 222 5
Q ss_pred CeEEEEeeCCcccccCCCCChhHHHHHHHHH-HHHcCCcEEEeecCCC
Q 014963 140 LKLGMYSSAGYYTCSKQMPGSLGYEEQDAKT-FALWGVDYLKYDNCYT 186 (415)
Q Consensus 140 lk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~-~~~wGvdyiK~D~~~~ 186 (415)
+.++++++.|.+.-.+..+|. ++..+.. |.+..+|.+=+++...
T Consensus 235 ~~v~~HiC~Gn~~~~~~~~~~---y~~i~~~L~~~~~vd~~~lE~~~~ 279 (368)
T PRK06520 235 LTIGLHVCRGNFRSTWISEGG---YEPVAETLFGGVNVDAFFLEYDNE 279 (368)
T ss_pred cEEEEEeecCCCCCccccccc---hhHHHHHHHhhcCCCeEEEEeccC
Confidence 567878877654322222333 5556776 5789999999998643
No 168
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.50 E-value=81 Score=29.35 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
..+++.+|++|+++.+|+-.. ...++++.++|||+|=.|+-
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~---------------~~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDD---------------AEDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCCC
Confidence 688999999999999997521 23567788999999988864
No 169
>PLN00197 beta-amylase; Provisional
Probab=36.34 E-value=60 Score=34.62 Aligned_cols=59 Identities=27% Similarity=0.400 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+.+.+..++.+| |.+|++=|.+|.=|---++++.+.... +|-+.|++-+++.|||+=.
T Consensus 124 ~~~~~l~~~L~~L-----K~~GVdGVmvDvWWGiVE~~~p~~YdW------sgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 124 NRRKAMKASLQAL-----KSAGVEGIMMDVWWGLVERESPGVYNW------GGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4677888999988 778999999986554444434333222 2789999999999999643
No 170
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=36.34 E-value=77 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=.|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~---------------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVND---------------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCC---------------HHHHHHHHHcCCCEEeCCC
Confidence 688999999999999996411 2346788899999998775
No 171
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=36.25 E-value=51 Score=34.04 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEeecCCCCCC---------CccchHHHHHHHHH
Q 014963 161 LGYEEQDAKTFALWGVDYLKYDNCYTDGS---------KPMDRYPIMTRALM 203 (415)
Q Consensus 161 ~~~~~~~~~~~~~wGvdyiK~D~~~~~~~---------~~~~~y~~~~~al~ 203 (415)
..|.+..+++++.++||+|-+|+-+++.. ...+.|+.+++.|+
T Consensus 153 e~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR 204 (441)
T COG3325 153 ENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELR 204 (441)
T ss_pred HHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 34668889999999999999999876421 12346776665554
No 172
>PRK12677 xylose isomerase; Provisional
Probab=35.75 E-value=28 Score=35.57 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcC--CeEEE
Q 014963 79 IVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKG--LKLGM 144 (415)
Q Consensus 79 ~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~G--lk~Gi 144 (415)
.+++.+|.. +.+|.++++|=.|+.....+...++...-++|-.+|+.++++.+++| ++++|
T Consensus 115 ~~~r~IdlA-----~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 115 KVLRNIDLA-----AELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHH-----HHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 356666766 56788988885665432111112233333556678999999999866 88765
No 173
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.68 E-value=4.1e+02 Score=25.53 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHH--cCCeEEEEeeCC
Q 014963 73 CDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHS--KGLKLGMYSSAG 149 (415)
Q Consensus 73 ~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~--~Glk~Giw~~pg 149 (415)
.+++.+..++.++.| .++|+++|-+ ||-... +.-.....+|.+ .+.+..-.+. ++.++..+..+.
T Consensus 15 ~~f~~~~~~~ia~~L-----~~~GVd~IEv--G~~~~~----~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRAL-----AAAGIDYVEI--GYRSSP----EKEFKGKSAFCD-DEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHH-----HHCCCCEEEe--ecCCCC----ccccCCCccCCC-HHHHHHHHhhhccCCEEEEEECCC
Confidence 358899999999998 6678888755 664331 111223345555 3332222222 367888888765
No 174
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=35.64 E-value=82 Score=29.23 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|+.|+++.+|+-- -...++.+.++|||+|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn---------------~~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVN---------------EEEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecC---------------CHHHHHHHHHCCCCEEeCCC
Confidence 67999999999999999741 12456788899999998885
No 175
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=35.58 E-value=1e+02 Score=29.73 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.+++.|..+++. |.+ +.. .+.+.+ |.+...|.... -.|++.|.+++++.|+.+.- ++.
T Consensus 37 ~~~~~~~~A~~lk~~-----~~k-~~r-~~~~Kp-Rtsp~s~~g~g---~~gl~~l~~~~~~~Gl~~~t--~~~------ 97 (260)
T TIGR01361 37 SEEQIMETARFVKEA-----GAK-ILR-GGAFKP-RTSPYSFQGLG---EEGLKLLRRAADEHGLPVVT--EVM------ 97 (260)
T ss_pred CHHHHHHHHHHHHHH-----HHH-hcc-CceecC-CCCCccccccH---HHHHHHHHHHHHHhCCCEEE--eeC------
Confidence 788999999998553 333 222 344443 33322222211 24899999999999998742 221
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
....++.+.+. +|++|+=-.... ...+.+++.++|.+++++
T Consensus 98 --------d~~~~~~l~~~-~d~lkI~s~~~~-------n~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 98 --------DPRDVEIVAEY-ADILQIGARNMQ-------NFELLKEVGKQGKPVLLK 138 (260)
T ss_pred --------ChhhHHHHHhh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEe
Confidence 22234556667 899998643221 123555555555555554
No 176
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.53 E-value=86 Score=27.58 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|+.|+++.+|.--. ...++.+.++|||+|=.|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~---------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND---------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC---------------HHHHHHHHHCCCCEEecCC
Confidence 788999999999999987521 3466778899999998774
No 177
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=35.40 E-value=65 Score=32.32 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=60.6
Q ss_pred ccccCCCCCHHHHHHHHHHHHHc--CCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEE
Q 014963 68 WNHFWCDINEDIVKAAADALVSS--GLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMY 145 (415)
Q Consensus 68 W~~~~~~i~e~~i~~~ad~l~~~--gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 145 (415)
.+.+|.+ .++.+.+.|+++.+. .|.++|++||+|||--..... + +.-.-+++.+-.-+....++.+++
T Consensus 140 ~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~--------~-~~~~~~v~~~n~~~~g~~~~v~~H 209 (339)
T PRK09121 140 YDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF--------D-EVNDWGVAALERAIEGLKCETAVH 209 (339)
T ss_pred ccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh--------H-HHHHHHHHHHHHHHcCCCCceEEE
Confidence 3344443 366777777766542 567799999999977554200 0 000012233333334455667777
Q ss_pred eeCCccc---ccCCCC-Chh-HHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 146 SSAGYYT---CSKQMP-GSL-GYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 146 ~~pg~~~---c~~~~p-g~~-~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
++.|.+. .....+ |+. +-|+..+..+.+..||.+=++|-+.
T Consensus 210 vC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~ 255 (339)
T PRK09121 210 ICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHNS 255 (339)
T ss_pred EeCCCCCCCccccccccccccccHHHHHHHHHhCCCCEEEEEecCC
Confidence 7766321 100001 000 3356677888899999999998643
No 178
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=35.22 E-value=86 Score=30.66 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|+.|+++.+|+--. ...++++.+||||+|=.|+-
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND---------------EEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 689999999999999997411 24678889999999998863
No 179
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=35.18 E-value=1.6e+02 Score=30.75 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCcEEEEEEecCCCC-eeEEeeccccCCCCCCeEEEEEecCCcccc------------------ccc-CceEEEEECCCc
Q 014963 346 GYRFAVLIVNRDQWP-ANVTTHLEDFGIPPKTSVTARDLWEHKTLE------------------TPL-AGNLSANLDPHT 405 (415)
Q Consensus 346 ~g~~~Va~fN~~~~~-~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~------------------~~~-~~~l~~~l~ph~ 405 (415)
.|...|.+.|...+. ..++|.|.-+ ......++. +-+|.++. .+. ++.|+.+++|++
T Consensus 416 ~~~l~i~vvN~~~~d~~~~~i~l~G~--~~a~~~~~~-~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S 492 (501)
T COG3534 416 GGELTIFVVNRALEDALKLNISLNGL--KKAKSAEHQ-VLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLS 492 (501)
T ss_pred CCeEEEEEEeccccccccceEEeccc--cccceeeEE-EEecCccccccCCCCCCceecccCCCccccCCceeEecCCce
Confidence 478999999997544 7788888744 321111111 12222210 122 348999999999
Q ss_pred EEEEEEEe
Q 014963 406 CKMYLLQP 413 (415)
Q Consensus 406 ~~ll~l~p 413 (415)
+.++||++
T Consensus 493 ~~virl~~ 500 (501)
T COG3534 493 VSVIRLKL 500 (501)
T ss_pred EEEEEEec
Confidence 99999975
No 180
>PRK14057 epimerase; Provisional
Probab=35.12 E-value=3.5e+02 Score=26.08 Aligned_cols=77 Identities=12% Similarity=-0.045 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCC---------eEEEEeeCCccc--------------ccCCCCC---------hhHHHHHHHHHHHHcC
Q 014963 128 IKALADYVHSKGL---------KLGMYSSAGYYT--------------CSKQMPG---------SLGYEEQDAKTFALWG 175 (415)
Q Consensus 128 l~~l~~~i~~~Gl---------k~Giw~~pg~~~--------------c~~~~pg---------~~~~~~~~~~~~~~wG 175 (415)
+..+.++||+.|. |+||=++|++.. +....|| +.+.+++..+.+.+.|
T Consensus 112 ~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~ 191 (254)
T PRK14057 112 LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKR 191 (254)
T ss_pred HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcC
Confidence 7889999999997 699999998631 1112465 2333444445556777
Q ss_pred CcE-EEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 176 VDY-LKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 176 vdy-iK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
.++ |-+|.--. .+-...+.++|.++++.+
T Consensus 192 ~~~~IeVDGGI~---------~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 192 EGKIIVIDGSLT---------QDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CCceEEEECCCC---------HHHHHHHHHCCCCEEEEC
Confidence 765 67775322 123345567899988875
No 181
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=34.64 E-value=1.6e+02 Score=29.26 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=54.2
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHc-CCeEEEEeeCCcccccCCCCChhHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSK-GLKLGMYSSAGYYTCSKQMPGSLGYEEQ 166 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 166 (415)
.++|.+.++|-|-|-.. ..++-| |. ++.+++.+++. |-.+-+++.-+ + ..
T Consensus 190 ~eaGad~i~i~d~~~~~---------lsp~~f~ef~~p~-~k~i~~~i~~~~~~~~ilh~cg~------~--------~~ 245 (338)
T TIGR01464 190 VKAGAQAVQIFDSWAGA---------LSPEDFEEFVLPY-LKKIIEEVKARLPNVPVILFAKG------A--------GH 245 (338)
T ss_pred HHcCCCEEEEECCcccc---------CCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEeCC------c--------HH
Confidence 45788888876666432 122222 33 79999999987 44444655422 1 23
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 167 DAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 167 ~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
....+++.|++.+-+|+... +.++.+..+..+.+.+
T Consensus 246 ~~~~~~~~~~~~~s~d~~~d-----------l~e~~~~~~~~~~i~G 281 (338)
T TIGR01464 246 LLEELAETGADVVGLDWTVD-----------LKEARKRVGPGVAIQG 281 (338)
T ss_pred HHHHHHhcCCCEEEeCCCCC-----------HHHHHHHhCCCeeEEe
Confidence 46778889999999998632 4455556666655554
No 182
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.44 E-value=77 Score=30.98 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|+.|+++..|+-... -...++.+.++|||+|-.|+
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~n-------------~~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDNN-------------DPENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCCC-------------CHHHHHHHHHcCCCEEEecC
Confidence 5788999999999988877221 13467889999999999986
No 183
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=34.42 E-value=2.3e+02 Score=27.73 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=51.8
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCc------cc-----------ccC
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGY------YT-----------CSK 155 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~------~~-----------c~~ 155 (415)
...+++.++||-+|+.. ..+.|+ +.=++.+++-|.|+=-|++.|. +| .+.
T Consensus 40 ~~~~f~llVVDps~~g~---~~~~~~----------~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~wLg~ 106 (300)
T COG2342 40 LNSPFDLLVVDPSYCGP---FNTPWT----------IEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDWLGE 106 (300)
T ss_pred hcCCCcEEEEeccccCC---CCCcCc----------HHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCcccccC
Confidence 44568999999998875 223333 3334455666888888998753 11 111
Q ss_pred ---CCCC----------hhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 156 ---QMPG----------SLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 156 ---~~pg----------~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
.-|| -++-+....+++.+.|||++=+|-..
T Consensus 107 edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD 149 (300)
T COG2342 107 EDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVD 149 (300)
T ss_pred CCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceEEEeeec
Confidence 1133 33335677888999999999999753
No 184
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=34.36 E-value=73 Score=30.76 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++|+++..|+-... -...++++.++|||.|=.|+.
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n-------------~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNN-------------DPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccC-------------CHHHHHHHHHcCCCEEEECCH
Confidence 5789999999999999974110 123567888999999998864
No 185
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=34.24 E-value=1.6e+02 Score=26.70 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHH----HHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPI----MTRALM 203 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~----~~~al~ 203 (415)
+...++.+++.|++++|= +.|... ..++.+..+.+||||+|.-...... .+.... +.+..+
T Consensus 136 ~~~~l~~l~~~G~~i~ld-~~g~~~-------------~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~ 200 (236)
T PF00563_consen 136 LLENLRRLRSLGFRIALD-DFGSGS-------------SSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAK 200 (236)
T ss_dssp HHHHHHHHHHCT-EEEEE-EETSTC-------------GCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceeEee-eccCCc-------------chhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhh
Confidence 346777799999998762 111110 1256688999999999985443332 334444 444445
Q ss_pred HcCCCEEEEec
Q 014963 204 KAGRPIYYSLC 214 (415)
Q Consensus 204 ~~g~~i~~~~c 214 (415)
+.|..++.++.
T Consensus 201 ~~~~~via~gV 211 (236)
T PF00563_consen 201 SLGIKVIAEGV 211 (236)
T ss_dssp HTT-EEEEECE
T ss_pred ccccccceeec
Confidence 67777777653
No 186
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=34.10 E-value=2e+02 Score=28.41 Aligned_cols=103 Identities=21% Similarity=0.346 Sum_probs=62.1
Q ss_pred CCCCCCceEEecccccCCC--------------CCHHHHHHHHHHHHHc-CCcccCceEEEeCCCccccCCCCCCCeeec
Q 014963 56 GLGKSPPMGWNSWNHFWCD--------------INEDIVKAAADALVSS-GLSKLGYEYVNIDDCWGEQVRDENGNLQAK 120 (415)
Q Consensus 56 ~~~~~pp~GWnsW~~~~~~--------------i~e~~i~~~ad~l~~~-gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~ 120 (415)
|+..+|-.-|||.+..||. +.++.|++..+.+... |..+..++|+-| ...| -
T Consensus 24 gi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vti---------s~~G----E 90 (296)
T COG0731 24 GIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTI---------SLSG----E 90 (296)
T ss_pred CCccccchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEE---------eCCC----C
Confidence 3444444449999988885 5688888888877331 100012233332 1134 3
Q ss_pred CCCCCCcHHHHHHHHHHcCC-eEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 121 NATFPSGIKALADYVHSKGL-KLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 121 ~~~FP~Gl~~l~~~i~~~Gl-k~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
|..+|+ |..+++.+|+.|. +.-|=++ |+. ..+.+.+..-..=|+|+|.-..
T Consensus 91 PTLy~~-L~elI~~~k~~g~~~tflvTN-----------gsl---pdv~~~L~~~dql~~sLdA~~~ 142 (296)
T COG0731 91 PTLYPN-LGELIEEIKKRGKKTTFLVTN-----------GSL---PDVLEELKLPDQLYVSLDAPDE 142 (296)
T ss_pred cccccC-HHHHHHHHHhcCCceEEEEeC-----------CCh---HHHHHHhccCCEEEEEeccCCH
Confidence 466777 9999999999995 3322111 222 4445556677788999998643
No 187
>PLN02705 beta-amylase
Probab=34.01 E-value=66 Score=34.75 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+.+.+..++.+| |.+|++=|.||.=|--.++.+.+.... +|-+.|++-|++.|||+=.
T Consensus 265 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~~P~~YdW------sgY~~L~~mvr~~GLKlqv 323 (681)
T PLN02705 265 VDPEGVRQELSHM-----KSLNVDGVVVDCWWGIVEGWNPQKYVW------SGYRELFNIIREFKLKLQV 323 (681)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeEeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4678899999988 778999999986554433333332222 2689999999999999643
No 188
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.01 E-value=80 Score=29.56 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 130 ALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 130 ~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
..++.+|++|+++.+|+--. ...++++.+||||+|=.|+
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNE---------------PAEALALAARGVALIETDN 228 (229)
T ss_pred hhhHHHHhCCceEEEEEcCC---------------HHHHHHHHHhCCcEEEcCC
Confidence 34677999999999998622 3357889999999998775
No 189
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.90 E-value=95 Score=37.91 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=51.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCC----C--CCcHHHHHHHHHHcCCeEE
Q 014963 70 HFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNAT----F--PSGIKALADYVHSKGLKLG 143 (415)
Q Consensus 70 ~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~----F--P~Gl~~l~~~i~~~Glk~G 143 (415)
.+....+-+.+.+.++.+ +++|++.+.|=--+........|+...|..+ | .++++.|++.+|++||++-
T Consensus 750 q~~~~~tf~~~~~~l~Yl-----~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 750 QFHKDFTFADAEAILPYL-----AALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred EeCCCCCHHHHHHHhHHH-----HHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 455568899999999998 7789988888666654222334555443322 2 2369999999999999987
Q ss_pred EEeeC
Q 014963 144 MYSSA 148 (415)
Q Consensus 144 iw~~p 148 (415)
+=+-|
T Consensus 825 lDiV~ 829 (1693)
T PRK14507 825 LDIVP 829 (1693)
T ss_pred EEecc
Confidence 64444
No 190
>PLN02161 beta-amylase
Probab=33.88 E-value=68 Score=33.95 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+.+.+..++.+| |.+|++=|.+|-=|---++.+.+.... +|-+.|++-+++.|||+=.
T Consensus 114 ~~~~al~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq~ 172 (531)
T PLN02161 114 KRLKALTVSLKAL-----KLAGVHGIAVEVWWGIVERFSPLEFKW------SLYEELFRLISEAGLKLHV 172 (531)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4566788888887 778999999986554444333332222 2689999999999999643
No 191
>PRK06769 hypothetical protein; Validated
Probab=33.76 E-value=56 Score=29.11 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCCcHHHHHHHHHHcCCeEEEEee
Q 014963 123 TFPSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 123 ~FP~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
-|| |++++.+++|++|++++|=++
T Consensus 29 ~~p-gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 29 LFP-FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEEC
Confidence 455 599999999999999998765
No 192
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.30 E-value=3.5e+02 Score=26.81 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=46.3
Q ss_pred hccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC-CCCCCCeeecCCCCCCcHHH
Q 014963 52 LLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-RDENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 52 ~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-~d~~G~~~~~~~~FP~Gl~~ 130 (415)
-+.|.+.. +|| +.+......++++.+.-+.+.. .-|+-.+++....-... +-..+......+.+=.+++.
T Consensus 11 ~l~NRi~~-~pm--~~~~~~~g~~~~~~~~~y~~rA------~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 11 TLKNRIVV-SPM--CQYSAEDGVATDWHLVHYGSRA------LGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred EEeccCEE-ccc--ccCcCCCCCCCHHHHHHHHHHH------cCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 44555544 444 2232234567888887666643 33566666655443321 00012222222233336999
Q ss_pred HHHHHHHcCCeEEE
Q 014963 131 LADYVHSKGLKLGM 144 (415)
Q Consensus 131 l~~~i~~~Glk~Gi 144 (415)
+++.+|+.|-|+.+
T Consensus 82 l~~~vh~~G~~~~~ 95 (336)
T cd02932 82 IVDFIHSQGAKIGI 95 (336)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999999999664
No 193
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=32.84 E-value=38 Score=23.43 Aligned_cols=13 Identities=62% Similarity=1.300 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHh
Q 014963 12 LICVLLSCLMVMA 24 (415)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (415)
+||+||.|+.||.
T Consensus 39 licllli~iivml 51 (52)
T TIGR01294 39 LICLLLICIIVML 51 (52)
T ss_pred HHHHHHHHHHHHh
Confidence 7888999988874
No 194
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=32.75 E-value=2.9e+02 Score=27.71 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 126 SGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 126 ~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
.+++.|.++++++|+.|- .+|+ -...++.+.+.|++++|+=-.
T Consensus 76 e~~~~L~~~~~~~Gi~~~--stpf--------------d~~svd~l~~~~v~~~KIaS~ 118 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFL--STPF--------------DLESADFLEDLGVPRFKIPSG 118 (329)
T ss_pred HHHHHHHHHHHHhCCcEE--EEeC--------------CHHHHHHHHhcCCCEEEECcc
Confidence 378999999999999873 2332 234567788999999999654
No 195
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=32.69 E-value=2.2e+02 Score=25.67 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=58.4
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA 172 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 172 (415)
+..|++++.|=.+--. .|.-..|+ -+..-.+.+++.||++|.|+-+. + .+...+.+..+.+++.++
T Consensus 19 k~~g~~fviiKateG~-----~g~~~~D~-----~~~~~~~~A~~aGl~~G~YHf~~---~-~~~~~a~~qA~~f~~~~~ 84 (191)
T cd06414 19 KASGVDFAIIRAGYGG-----YGELQEDK-----YFEENIKGAKAAGIPVGVYFYSY---A-VTVAEAREEAEFVLRLIK 84 (191)
T ss_pred HhCCCCEEEEEEecCC-----CcccccCH-----HHHHHHHHHHHCCCceEEEEEEE---e-CCHHHHHHHHHHHHHHhh
Confidence 4457777777422211 12113443 37888888999999999998531 1 110112334455666666
Q ss_pred HcCCcE-EEeecCCCCC----CC---ccchHHHHHHHHHHcCC-CEEEE
Q 014963 173 LWGVDY-LKYDNCYTDG----SK---PMDRYPIMTRALMKAGR-PIYYS 212 (415)
Q Consensus 173 ~wGvdy-iK~D~~~~~~----~~---~~~~y~~~~~al~~~g~-~i~~~ 212 (415)
..+.++ +-+|.-.... .. ..+...++.+.+++.|. +++++
T Consensus 85 ~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iY~ 133 (191)
T cd06414 85 GYKLSYPVYYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPGIYA 133 (191)
T ss_pred ccCCCCCeEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 666665 3467633221 11 12344578888887775 45554
No 196
>PRK04326 methionine synthase; Provisional
Probab=32.59 E-value=1.9e+02 Score=28.61 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHH-HcCCeEEEEeeCCcccccCCCCChhHHHHHHHH
Q 014963 91 GLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVH-SKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAK 169 (415)
Q Consensus 91 gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~-~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~ 169 (415)
.|.++|+++++||+-=-.. .++.+ .=..+..+.+- ..+.+.++++..|. ++...+
T Consensus 169 ~l~~~G~~~iqidEP~l~~----------~~~~~-~~~~~~l~~~~~~~~~~v~lH~C~G~-------------~~~~~~ 224 (330)
T PRK04326 169 NLVEAGAKYIQIDEPALAT----------HPEDV-EIAVEALNRIVKGINAKLGLHVCYGD-------------YSRIAP 224 (330)
T ss_pred HHHHCCCCEEEecCchhhc----------CHHHH-HHHHHHHHHHHhCCCCEEEEEEeCCC-------------cHHHHH
Confidence 4577899999999742221 01111 01122222221 22445566555331 245677
Q ss_pred HHHHcCCcEEEeecCC
Q 014963 170 TFALWGVDYLKYDNCY 185 (415)
Q Consensus 170 ~~~~wGvdyiK~D~~~ 185 (415)
.+.+.|+|.|-+|++.
T Consensus 225 ~l~~~~vd~i~~d~~~ 240 (330)
T PRK04326 225 YILEFPVDQFDLEFAN 240 (330)
T ss_pred HHHhCCCCEEEEEeCC
Confidence 8899999999999975
No 197
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=32.37 E-value=2.3e+02 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHHHcCC-----eEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 125 PSGIKALADYVHSKGL-----KLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 125 P~Gl~~l~~~i~~~Gl-----k~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+.+.+++.+|++|. ++-+|+--. ...++.+.++|||.|=.|+-
T Consensus 190 ~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~---------------~~~~~~ll~~GVDGIITD~P 239 (265)
T cd08576 190 YRTCARLREAIKKRDTPGYLGKVYGWTSDK---------------GSSVRKLLRLGVDGIITNYP 239 (265)
T ss_pred ccccHHHHHHHHHcCCCCcCCeEEEEeCCC---------------HHHHHHHHhcCCCEEEECCH
Confidence 4678999999999999 777776411 24667888999999988875
No 198
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=32.17 E-value=81 Score=30.87 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEeecCCCCCC---CccchHHHHHHHHH
Q 014963 161 LGYEEQDAKTFALWGVDYLKYDNCYTDGS---KPMDRYPIMTRALM 203 (415)
Q Consensus 161 ~~~~~~~~~~~~~wGvdyiK~D~~~~~~~---~~~~~y~~~~~al~ 203 (415)
..+.+..++.+.++|+|+|-+|+...... ...+.|..+.+.|+
T Consensus 101 ~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 101 QNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 44578888899999999999999877543 34567777666664
No 199
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=31.84 E-value=1.4e+02 Score=29.72 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC--c---------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-
Q 014963 73 CDINEDIVKAAADALVS--SGLSKLGYEYVNIDDC--W---------GEQVRDENGNLQAKNATFPSGIKALADYVHSK- 138 (415)
Q Consensus 73 ~~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdG--W---------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~- 138 (415)
..+|+++|.+.++.+++ ...+++|++-|.|-.+ + .+.+.|.+|--..+.-+| +.++++.|++.
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~v 218 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVW 218 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 35888888888777754 2446689999888764 3 233345666433444444 46788888764
Q ss_pred --CCeEEEEeeCCcccccCCCCCh-hHHHHHHHHHHHHcCCcEEEee
Q 014963 139 --GLKLGMYSSAGYYTCSKQMPGS-LGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 139 --Glk~Giw~~pg~~~c~~~~pg~-~~~~~~~~~~~~~wGvdyiK~D 182 (415)
++.+++=+.+. ..+. .|. .+-....++.+.+.|+|||-+-
T Consensus 219 G~d~~v~vri~~~-~~~~---~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 219 PEDKPLFVRISAT-DWVE---GGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCceEEEEEccc-ccCC---CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34455444432 1111 111 1223456777889999999863
No 200
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.68 E-value=1.3e+02 Score=30.37 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCeEEEEee---------CCcc-cccCCCC-ChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 128 IKALADYVHSKGLKLGMYSS---------AGYY-TCSKQMP-GSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~---------pg~~-~c~~~~p-g~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
...+++.+|+.|+++-.|+- ||.+ .+....+ +....++.....+.+.|||+|=.||-.
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~ 348 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPA 348 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCC
Confidence 46899999999999999985 2221 1111111 112223333334559999999999864
No 201
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=31.56 E-value=47 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeC
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNID 103 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~ID 103 (415)
+|.+.+++.++.| ++.+|+|+++|
T Consensus 97 lt~E~v~~vv~eL-----~~~~fDyIi~D 120 (272)
T COG2894 97 LTPEGVKKVVNEL-----KAMDFDYIIID 120 (272)
T ss_pred CCHHHHHHHHHHH-----HhcCCCEEEec
Confidence 8999999999998 66789999999
No 202
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=31.53 E-value=2.9e+02 Score=25.99 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc
Q 014963 59 KSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK 138 (415)
Q Consensus 59 ~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~ 138 (415)
.-.||-|..=. .+ +...+.+... ..|++++. ||.++.....-++.|. .-=.-.+.+..-++..
T Consensus 40 efvPmlwg~~~-----~~-~~~~~~v~~~------~~~~~~ll---~fNEPD~~~qsn~~p~--~aa~~w~~~~~~~~~~ 102 (239)
T PF11790_consen 40 EFVPMLWGPGS-----DD-DDWLANVQNA------HPGSKHLL---GFNEPDLPGQSNMSPE--EAAALWKQYMNPLRSP 102 (239)
T ss_pred eEeecccCCCC-----Cc-hHHHHHHHhh------ccCcccee---eecCCCCCCCCCCCHH--HHHHHHHHHHhHhhcC
Confidence 45577776522 22 3334444432 34677776 6776532222233332 1111245555556667
Q ss_pred CCeEEEEeeCCcccccCCCCChhHHHHHHHHHHH-HcCCcEEEeecCCCCCCCccchHHHHHHHH-HHcCCCEEEEe
Q 014963 139 GLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA-LWGVDYLKYDNCYTDGSKPMDRYPIMTRAL-MKAGRPIYYSL 213 (415)
Q Consensus 139 Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~-~wGvdyiK~D~~~~~~~~~~~~y~~~~~al-~~~g~~i~~~~ 213 (415)
|+|+| .|....+....++...|++.+++... .+-||||=+-+-. . ..+.+....+.+ ++.+++|.|--
T Consensus 103 ~~~l~---sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~iavH~Y~---~-~~~~~~~~i~~~~~~~~kPIWITE 172 (239)
T PF11790_consen 103 GVKLG---SPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFIAVHWYG---G-DADDFKDYIDDLHNRYGKPIWITE 172 (239)
T ss_pred CcEEE---CCeecccCCCCCCccHHHHHHHHhcccCCCccEEEEecCC---c-CHHHHHHHHHHHHHHhCCCEEEEe
Confidence 88876 45543343223556778887777766 5666666554431 1 123444444444 46689998864
No 203
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=31.45 E-value=5.1e+02 Score=25.78 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeC--CCccccCCCCCCCeeecCCCCCC-------cHHHHHHHHHHcCCeEEEEeeCC
Q 014963 79 IVKAAADALVSSGLSKLGYEYVNID--DCWGEQVRDENGNLQAKNATFPS-------GIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 79 ~i~~~ad~l~~~gl~~~G~~~~~ID--dGW~~~~~d~~G~~~~~~~~FP~-------Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
.+.+.++.+ .+.||+=|-+| |+++....+ | ..||. .++.|++++|+++-.+-|...-|
T Consensus 148 il~~rl~~l-----~~kGfDGvfLD~lDsy~~~~~~--~------~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 148 IAFSYLDRV-----IAQGFDGVYLDLIDAFEYWAEN--G------DNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred HHHHHHHHH-----HHcCCCeEeeccchhhhhhccc--C------CcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 344444544 56688877777 677643211 1 22332 35666666699988777765543
Q ss_pred ccc--c-----c--------------CC---CCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCC--ccchHHHHHHHHH
Q 014963 150 YYT--C-----S--------------KQ---MPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSK--PMDRYPIMTRALM 203 (415)
Q Consensus 150 ~~~--c-----~--------------~~---~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~--~~~~y~~~~~al~ 203 (415)
... + . .+ ...-+++.-..++++++.|+.-+=+|+|..+... .....+++.+.++
T Consensus 215 ~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~ 294 (315)
T TIGR01370 215 EELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKAR 294 (315)
T ss_pred hhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHH
Confidence 211 1 0 00 0112344555667777779999999999764321 1234456677777
Q ss_pred HcCC
Q 014963 204 KAGR 207 (415)
Q Consensus 204 ~~g~ 207 (415)
+.|-
T Consensus 295 ~~Gf 298 (315)
T TIGR01370 295 AAGL 298 (315)
T ss_pred HcCC
Confidence 7774
No 204
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.24 E-value=3.6e+02 Score=26.92 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=47.4
Q ss_pred hccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC-CCCCCCeeecCCCCCCcHHH
Q 014963 52 LLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-RDENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 52 ~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-~d~~G~~~~~~~~FP~Gl~~ 130 (415)
-+.|.+. .+||. .... -...+|++.+.-+.+.. .-|+-.+++...+-... +-..+......+.+=.+++.
T Consensus 11 ~lkNRiv-~apm~-~~~~-~~G~~t~~~~~~y~~~A------~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 11 TLRNRIV-STAHA-TNYA-EDGLPSERYIAYHEERA------RGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred EecCCeE-ECCcc-cccc-cCCCCCHHHHHHHHHHH------hCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 3455554 34552 2222 33467888887776643 23555566554443321 11112233333444447999
Q ss_pred HHHHHHHcCCeEEEE
Q 014963 131 LADYVHSKGLKLGMY 145 (415)
Q Consensus 131 l~~~i~~~Glk~Giw 145 (415)
+++.+|+.|-++.+=
T Consensus 82 l~~~vh~~g~~~~~Q 96 (343)
T cd04734 82 LAEAVHAHGAVIMIQ 96 (343)
T ss_pred HHHHHHhcCCeEEEe
Confidence 999999999987753
No 205
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=31.08 E-value=1e+02 Score=30.30 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=52.3
Q ss_pred HHHHHHHHHHc--CCeEEEEeeCCcc----cccCCCCCh-hHHHHHHHHHHHHcCCcEEEeecCCCCCC-CccchHHHHH
Q 014963 128 IKALADYVHSK--GLKLGMYSSAGYY----TCSKQMPGS-LGYEEQDAKTFALWGVDYLKYDNCYTDGS-KPMDRYPIMT 199 (415)
Q Consensus 128 l~~l~~~i~~~--Glk~Giw~~pg~~----~c~~~~pg~-~~~~~~~~~~~~~wGvdyiK~D~~~~~~~-~~~~~y~~~~ 199 (415)
++.+. .++++ |+|+-+-+.-... ...-..+.. ..+++..++.++++|+|+|=+|+-..... ...+.|..+.
T Consensus 54 ~~~~~-~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll 132 (334)
T smart00636 54 FGQLK-ALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALL 132 (334)
T ss_pred HHHHH-HHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHH
Confidence 45544 45655 8887776653211 000111222 34678889999999999999999776432 2345677777
Q ss_pred HHHHHc-------CCCEEEEecC
Q 014963 200 RALMKA-------GRPIYYSLCE 215 (415)
Q Consensus 200 ~al~~~-------g~~i~~~~c~ 215 (415)
+.|++. ++...++.+.
T Consensus 133 ~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 133 KELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred HHHHHHHHHhcccCCceEEEEEe
Confidence 776532 3466666543
No 206
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.02 E-value=1e+02 Score=29.01 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=.|+-
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~---------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND---------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC---------------HHHHHHHHHcCCCEEEcCCC
Confidence 578999999999999887411 13567788999999988863
No 207
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=30.87 E-value=1.2e+02 Score=29.76 Aligned_cols=52 Identities=10% Similarity=-0.097 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCeEEEEeeCCc-ccccCCCCChh--HHHHHHHHHHHHcCCcEEEeecCC
Q 014963 130 ALADYVHSKGLKLGMYSSAGY-YTCSKQMPGSL--GYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 130 ~l~~~i~~~Glk~Giw~~pg~-~~c~~~~pg~~--~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
.+++.+|+.|+++-+|+--.. ... +..+ ...+...+.+.++|||+|=.|+-.
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~~~~~----~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNEFVSL----AFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCCcccc----chhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 799999999999999975210 000 1111 122445677889999999999743
No 208
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=30.86 E-value=48 Score=38.34 Aligned_cols=52 Identities=19% Similarity=0.433 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCc---HHHHHHHHHHcCCeEEEEee
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSG---IKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~G---l~~l~~~i~~~Glk~Giw~~ 147 (415)
++.+++..|. +||+|+.++|.-+.. |+ +|.+. ++.|.+..+++|+.||+=++
T Consensus 249 ~~~~r~~~~~--------~g~~~~~~~~~~f~~------dl-----~~~~~~~~~~~l~~~~~~~~~~fgvk~~ 303 (1012)
T TIGR03315 249 YKFVRDTMDE--------MGFDYIVLKEESFSH------DL-----QYEDAVAMLQRLQLLAKEKGLGFGVKLT 303 (1012)
T ss_pred HHHHHHHHHh--------cCCceEecchhhccc------cc-----chhHHHHHHHHHHHHHHHcCCeeeEEEe
Confidence 6666666654 499999999887753 22 33332 68888888999999998765
No 209
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=30.64 E-value=3.6e+02 Score=29.82 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCC--CCCeeecCCCCCCc----HHHHHHHHHHcCCeEEEEee
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDE--NGNLQAKNATFPSG----IKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~--~G~~~~~~~~FP~G----l~~l~~~i~~~Glk~Giw~~ 147 (415)
.++.+.+.++.+.| ++.||+.+.+|+-........ .+.... =.|=+| ......-+++.|++.-+.+.
T Consensus 68 ~Vspe~Fe~QL~~L-----k~nGY~~VSL~el~~~~~g~~~LP~KaV~--LTFDDGy~sny~~AlPILKkyg~pATfFvV 140 (672)
T PRK14581 68 SVRSSALNEQFVWL-----RDNGYHVVSVDQILAARNGGPTLPDKAVL--LTFDDGYSSFYRRVYPLLKAYKWSAVLAPV 140 (672)
T ss_pred ccCHHHHHHHHHHH-----HHCcCEEecHHHHHHHHhcCCCCCCCeEE--EEEEcCCcchHHHHHHHHHHcCCCEEEEEe
Confidence 48899999999999 555666666654432110000 011000 012222 45566678999999776543
No 210
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=30.58 E-value=1.8e+02 Score=28.89 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=53.7
Q ss_pred CceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHH
Q 014963 96 GYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKT 170 (415)
Q Consensus 96 G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~ 170 (415)
|.+.++|=|-|-.. .+.+ ..++.| |. ++.+++.+|++|-++=+.+. |+. ....+..
T Consensus 169 Gad~I~i~Ddwa~~----~~~~-LSpe~f~efv~P~-~krIi~~ik~~~g~piilH~-----cG~--------~~~~l~~ 229 (321)
T cd03309 169 EPDLLVYHDDLGSQ----KGSF-ISPATFREFILPR-MQRIFDFLRSNTSALIVHHS-----CGA--------AASLVPS 229 (321)
T ss_pred CCCEEEEeCCCccc----cCCc-cCHHHHHHHHHHH-HHHHHHHHHhccCCceEEEe-----CCC--------cHHHHHH
Confidence 99999997767553 1222 222333 44 79999999998423323333 321 1345677
Q ss_pred HHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 171 FALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 171 ~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
+.+.|+|-+-+|+...+ +.++.+..+..+.+.+
T Consensus 230 ~~e~g~dvl~~d~~~~d----------l~eak~~~g~k~~l~G 262 (321)
T cd03309 230 MAEMGVDSWNVVMTANN----------TAELRRLLGDKVVLAG 262 (321)
T ss_pred HHHcCCCEEEecCCCCC----------HHHHHHHhCCCeEEEc
Confidence 88899999999986511 3344455565565543
No 211
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.47 E-value=1.2e+02 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++++|+.|+++.+|+--. ...++.+.++|||+|=.|+-
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~---------------~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVND---------------PAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHhcCCCEEEcCCH
Confidence 689999999999999998421 24678889999999988863
No 212
>PRK12313 glycogen branching enzyme; Provisional
Probab=30.37 E-value=2e+02 Score=31.48 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=41.2
Q ss_pred eEEEEEc-CCCcEEEEEEecCCCCee-EEeeccccCCCCCCeEEEEEecCCcccc--cc-----------------cCce
Q 014963 338 EIWTAPL-SGYRFAVLIVNRDQWPAN-VTTHLEDFGIPPKTSVTARDLWEHKTLE--TP-----------------LAGN 396 (415)
Q Consensus 338 ~vw~~~l-~~g~~~Va~fN~~~~~~~-~~i~l~~lGL~~~~~~~v~Dlw~g~~l~--~~-----------------~~~~ 396 (415)
-++.+.. .+++.+|.++|.++.+.+ +.|.+.. .. ..+++++..+.. +. ....
T Consensus 540 laf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~-----~g--~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~ 612 (633)
T PRK12313 540 LSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPV-----AG--IYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQS 612 (633)
T ss_pred EEEEEeCCCCCceEEEEEeCCCCcccceeECCCC-----CC--eEEEEEcCCchhcCCCCcCCCCceeecccccCCCCCE
Confidence 3566654 245678899999876543 4444321 12 344444422210 00 1235
Q ss_pred EEEEECCCcEEEEEEEeC
Q 014963 397 LSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 397 l~~~l~ph~~~ll~l~p~ 414 (415)
+.+.|||.++.+|+.+|+
T Consensus 613 ~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 613 LTLTLPPLGALVLKPKRR 630 (633)
T ss_pred EEEEeCCCEEEEEEEccc
Confidence 778999999999999874
No 213
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=30.29 E-value=1.9e+02 Score=28.81 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=52.6
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcC-CeEEEEeeCCcccccCCCCChhHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKG-LKLGMYSSAGYYTCSKQMPGSLGYEEQ 166 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~G-lk~Giw~~pg~~~c~~~~pg~~~~~~~ 166 (415)
.++|.+.++|-|-|-+. ..++-| |. ++.+++.++++| -.+.+++.-+ + . .
T Consensus 196 ~eaGad~i~i~d~~~~~---------lsp~~f~ef~~P~-~k~i~~~i~~~~~~~~ilh~cg~------~----~----~ 251 (346)
T PRK00115 196 IEAGAQAVQIFDSWAGA---------LSPADYREFVLPY-MKRIVAELKREHPDVPVILFGKG------A----G----E 251 (346)
T ss_pred HHcCCCEEEEecCcccc---------CCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEcCC------c----H----H
Confidence 45788888765555431 222233 33 799999999986 3455555422 1 1 2
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 167 DAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 167 ~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
..+.+++.|++-|-+|+... +.++.+..+..+.+.+
T Consensus 252 ~~~~~~~~~~~~is~d~~~d-----------l~~~k~~~g~~~~i~G 287 (346)
T PRK00115 252 LLEAMAETGADVVGLDWTVD-----------LAEARRRVGDKKALQG 287 (346)
T ss_pred HHHHHHhcCCCEEeeCCCCC-----------HHHHHHHcCCCeEEEe
Confidence 35568889999999998632 3445455565565543
No 214
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=30.20 E-value=4.5e+02 Score=25.01 Aligned_cols=84 Identities=18% Similarity=0.308 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcccC-ceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE-EeeCCcc
Q 014963 74 DINEDIVKAAADALVSSGLSKLG-YEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM-YSSAGYY 151 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G-~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi-w~~pg~~ 151 (415)
..+++...+....+ .+.| ++|+-|+--+.. .-++.+.+.+|+.|.|.=+ |++.
T Consensus 91 ~~~~~~~~~ll~~~-----~~~~~~d~vDiEl~~~~-----------------~~~~~l~~~~~~~~~kvI~S~H~f--- 145 (253)
T PRK02412 91 ALSDEEYLALIKAV-----IKSGLPDYIDVELFSGK-----------------DVVKEMVAFAHEHGVKVVLSYHDF--- 145 (253)
T ss_pred CCCHHHHHHHHHHH-----HhcCCCCEEEEeccCCh-----------------HHHHHHHHHHHHcCCEEEEeeCCC---
Confidence 45677666666665 3445 688888743221 1378899999998888543 2221
Q ss_pred cccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 152 TCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 152 ~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
...|... .+...++.+.++|.|.+|+=....
T Consensus 146 ---~~tP~~~-~l~~~~~~~~~~gaDivKia~~a~ 176 (253)
T PRK02412 146 ---EKTPPKE-EIVERLRKMESLGADIVKIAVMPQ 176 (253)
T ss_pred ---CCCcCHH-HHHHHHHHHHHhCCCEEEEEecCC
Confidence 1114333 356778889999999999977654
No 215
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=30.18 E-value=2.3e+02 Score=26.95 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=39.7
Q ss_pred cEEEEEEecCCCCeeEEeecccc---CCCCCCeEEEEEecCCcccccccCceEEEEECCCcEEEEEEEeC
Q 014963 348 RFAVLIVNRDQWPANVTTHLEDF---GIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCKMYLLQPI 414 (415)
Q Consensus 348 ~~~Va~fN~~~~~~~~~i~l~~l---GL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ll~l~p~ 414 (415)
...+-+.|.++++.-+.+.+.++ |...+....+.....++- ....-.++|+|++..++||.+.
T Consensus 34 ~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eL----iaSP~~l~L~pg~~q~IRli~l 99 (234)
T PRK15308 34 ATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGL----VVSPEKFALPAGTTRTVRVISL 99 (234)
T ss_pred eEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcE----EEcCceeEECCCCeEEEEEEEc
Confidence 45678999999999888887766 332222211111233332 2234468999999999998764
No 216
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=30.15 E-value=1.1e+02 Score=29.19 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEee
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
+.+++.+|+.|++..+|+--. ...++++.++|||+|=.|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~---------------~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNE---------------PWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCC---------------HHHHHHHHHcCCCEEecC
Confidence 578999999999999987521 235778899999998766
No 217
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.08 E-value=4.6e+02 Score=26.34 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEEE--eeCC-cccccC--CCCChhHHHHHHHHHHH--HcCCcEEEeecCCCC----CC-------
Q 014963 128 IKALADYVHSKGLKLGMY--SSAG-YYTCSK--QMPGSLGYEEQDAKTFA--LWGVDYLKYDNCYTD----GS------- 189 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw--~~pg-~~~c~~--~~pg~~~~~~~~~~~~~--~wGvdyiK~D~~~~~----~~------- 189 (415)
++.+++.+++.|+-+-+- .-+. ...-.. +..-.-+.+..-++.+. +.|+|.+|+.+.... +.
T Consensus 145 l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~ 224 (340)
T PRK12858 145 VERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAY 224 (340)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccc
Confidence 778888888888887663 2221 100000 00011134566778888 599999999987442 11
Q ss_pred CccchHHHHHHHHHHcCCCEEEE
Q 014963 190 KPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 190 ~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
...+.-..+.+....++.+++|.
T Consensus 225 ~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 225 TQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred cHHHHHHHHHHHHhhCCCCEEEE
Confidence 11112233555555677788775
No 218
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.98 E-value=3.6e+02 Score=26.06 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCC-eEEEEeeCCccc
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGL-KLGMYSSAGYYT 152 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl-k~Giw~~pg~~~ 152 (415)
.++.+.+.+.++.+ ++.|++.|.+= -|..... |+ +..+++++++.|+ ++.|.++
T Consensus 39 ~ls~eei~~~i~~~-----~~~gi~~I~~t----------GGEPll~----~~-l~~iv~~l~~~g~~~v~i~TN----- 93 (302)
T TIGR02668 39 ELSPEEIERIVRVA-----SEFGVRKVKIT----------GGEPLLR----KD-LIEIIRRIKDYGIKDVSMTTN----- 93 (302)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCEEEEE----------Ccccccc----cC-HHHHHHHHHhCCCceEEEEcC-----
Confidence 47888888888877 44566666651 2444333 33 8889999999988 6766544
Q ss_pred ccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 153 CSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 153 c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
|. .++..++.+++.|++.|.+..
T Consensus 94 ------G~--ll~~~~~~l~~~g~~~v~iSl 116 (302)
T TIGR02668 94 ------GI--LLEKLAKKLKEAGLDRVNVSL 116 (302)
T ss_pred ------ch--HHHHHHHHHHHCCCCEEEEEe
Confidence 11 134566778899999777654
No 219
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=29.94 E-value=76 Score=31.53 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+.+++.+|+.|++..+|+-- -...++++.++|||+|=.|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVN---------------d~~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVN---------------EPWLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCC---------------CHHHHHHHHhcCCCEEEcCCH
Confidence 67899999999999998752 134688899999999999974
No 220
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.71 E-value=4.1e+02 Score=25.55 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
++++++++|++|+++-+..+.. +..+ .-..+++...++.+.+.|++.|-+ +...+.-..+....+.+++++..+
T Consensus 121 ~~~~i~~ak~~G~~v~~~~~~~---~d~~-~~~~~~~~~~~~~~~~~g~~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 121 IRDSVAYLKSHGREVIFDAEHF---FDGY-KANPEYALATLKAAAEAGADWLVL--CDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHHHcCCeEEEeEEec---cccC-CCCHHHHHHHHHHHHhCCCCEEEE--ecCCCCCCHHHHHHHHHHHHHhCC
Confidence 7899999999999876543311 1111 113567788888899999998653 222233233455666677765544
Q ss_pred CE
Q 014963 208 PI 209 (415)
Q Consensus 208 ~i 209 (415)
++
T Consensus 195 ~~ 196 (273)
T cd07941 195 GV 196 (273)
T ss_pred CC
Confidence 43
No 221
>PRK09505 malS alpha-amylase; Reviewed
Probab=29.69 E-value=1.5e+02 Score=32.76 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcccc-------------CCCCCCCeeecC----CCCC--CcHHHHHHHHH
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQ-------------VRDENGNLQAKN----ATFP--SGIKALADYVH 136 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~-------------~~d~~G~~~~~~----~~FP--~Gl~~l~~~i~ 136 (415)
+-+.|.+.++.| +++|++.|.|=--++.. .....|+|..|- .+|- ..++.|++.+|
T Consensus 228 dl~Gi~~kLdyl-----~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH 302 (683)
T PRK09505 228 DLRGLTEKLDYL-----QQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAH 302 (683)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 566788888888 77888877653222210 001246665442 2332 25999999999
Q ss_pred HcCCeEEE
Q 014963 137 SKGLKLGM 144 (415)
Q Consensus 137 ~~Glk~Gi 144 (415)
++|||+-+
T Consensus 303 ~~Gi~Vil 310 (683)
T PRK09505 303 QRGIRILF 310 (683)
T ss_pred HCCCEEEE
Confidence 99999543
No 222
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.33 E-value=1.6e+02 Score=29.49 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC-----------ccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-C
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDDC-----------WGEQVRDENGNLQAKNATFPSGIKALADYVHSK-G 139 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdG-----------W~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-G 139 (415)
..|+++|.+.++.+++ ...+++|++.|.|=.+ -.+.+.|.+|-=..+..+| +..+++.|++. |
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~vG 202 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAVG 202 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHcC
Confidence 4788888888877754 2346689999988432 1223345665333444444 36777888764 4
Q ss_pred C--eEEEEeeCCcccccCCCCC--hhHHHHHHHHHHHHcCCcEEEee
Q 014963 140 L--KLGMYSSAGYYTCSKQMPG--SLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 140 l--k~Giw~~pg~~~c~~~~pg--~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
- .+++=+.+.- ..++ ..+-....++.+.+.|+|||-+-
T Consensus 203 ~d~~v~iRi~~~D-----~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 203 EDFIIIYRLSMLD-----LVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCceEEEEecccc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3 4454444210 1111 11223467788899999999884
No 223
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.23 E-value=5.9e+02 Score=25.44 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEe--CCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHH--cCCeEEEEee
Q 014963 72 WCDINEDIVKAAADALVSSGLSKLGYEYVNI--DDCWGEQVRDENGNLQAKNATFPSGIKALADYVHS--KGLKLGMYSS 147 (415)
Q Consensus 72 ~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~I--DdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~--~Glk~Giw~~ 147 (415)
...++.+..++.++.| .++|+++|-+ -+|+... ........+|+ . ..++.+++ ++.|+..++.
T Consensus 19 ~~~f~~~~~~~i~~~L-----~~aGv~~IEvg~~~g~g~~------s~~~g~~~~~~-~-e~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 19 RHQYTLEQVRAIARAL-----DAAGVPVIEVTHGDGLGGS------SFNYGFGAHTD-E-EYIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CCccCHHHHHHHHHHH-----HHcCCCEEEeecCCCCCCc------cccCCCCCCCH-H-HHHHHHHHhCCCCEEEEEec
Confidence 3568999999999998 6667888766 3344322 11122233342 2 23344432 3567877776
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec-CCCCCCCccchHHHHHHHHHHcCCCEEEEecCCC
Q 014963 148 AGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN-CYTDGSKPMDRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 148 pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~-~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
|+.. . ..+++...+.|+|.|.+=+ |.. .+.-.+..+.+++.|..+.+..+..+
T Consensus 86 pg~~--------~----~~dl~~a~~~gvd~iri~~~~~e-----~~~~~~~i~~ak~~G~~v~~~l~~a~ 139 (337)
T PRK08195 86 PGIG--------T----VDDLKMAYDAGVRVVRVATHCTE-----ADVSEQHIGLARELGMDTVGFLMMSH 139 (337)
T ss_pred cCcc--------c----HHHHHHHHHcCCCEEEEEEecch-----HHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 5421 1 1345666777888877643 221 12233444455566666655555433
No 224
>PLN02905 beta-amylase
Probab=29.18 E-value=90 Score=33.92 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+.+.+..++.+| |.+|++=|.||.=|---+..+.+.... +|-+.|++-+++.|||+=.
T Consensus 283 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~gP~~YdW------sgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 283 ADPDGLLKQLRIL-----KSINVDGVKVDCWWGIVEAHAPQEYNW------NGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4567888888888 778999999985554433333332222 2689999999999999643
No 225
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.67 E-value=3.8e+02 Score=25.04 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcC--CeEEEEeeCCccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKG--LKLGMYSSAGYYT 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~G--lk~Giw~~pg~~~ 152 (415)
.+...+.+.++.+ .+.|++++-|| -+ +|.+.||- .| |+ .+++.+++.+ +.+=+.+.+.
T Consensus 16 ~d~~~l~~~~~~l-----~~~~~~~~H~D----im----Dg~fvpn~-~~--G~-~~v~~lr~~~~~~~lDvHLm~~--- 75 (228)
T PTZ00170 16 ADFSKLADEAQDV-----LSGGADWLHVD----VM----DGHFVPNL-SF--GP-PVVKSLRKHLPNTFLDCHLMVS--- 75 (228)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEe----cc----cCccCCCc-Cc--CH-HHHHHHHhcCCCCCEEEEECCC---
Confidence 4667888899988 66678888888 12 46666663 22 54 6788888875 3333333321
Q ss_pred ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEec
Q 014963 153 CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSLC 214 (415)
Q Consensus 153 c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~c 214 (415)
..+..++.+.+.|+|++=+-+-.. .+.-.+..+++++.|..+-+..+
T Consensus 76 ----------~p~~~i~~~~~~Gad~itvH~ea~-----~~~~~~~l~~ik~~G~~~gval~ 122 (228)
T PTZ00170 76 ----------NPEKWVDDFAKAGASQFTFHIEAT-----EDDPKAVARKIREAGMKVGVAIK 122 (228)
T ss_pred ----------CHHHHHHHHHHcCCCEEEEeccCC-----chHHHHHHHHHHHCCCeEEEEEC
Confidence 134456788899999997744321 11134677777777765555543
No 226
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.64 E-value=47 Score=26.97 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhh
Q 014963 13 ICVLLSCLMVMAA 25 (415)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (415)
++++|++||.+++
T Consensus 9 L~l~LA~lLlisS 21 (95)
T PF07172_consen 9 LGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 227
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=28.34 E-value=3.6e+02 Score=27.26 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCC----hhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPG----SLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg----~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
+..+++.+|+.||-.-+|.-|-..... .++ .-+.+..-++.-++.|.|.||+.+...
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~--~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFK--KDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccC--CcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 788889999999999998876322111 111 123445555556799999999999854
No 228
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=28.15 E-value=70 Score=26.98 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHcCCeEEEEee--CCcccccCCCCChhHHHHHHHH
Q 014963 127 GIKALADYVHSKGLKLGMYSS--AGYYTCSKQMPGSLGYEEQDAK 169 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~--pg~~~c~~~~pg~~~~~~~~~~ 169 (415)
-|..|.+.+++.|+..-+|+. ||+.||....|+..+-++.+.+
T Consensus 67 eL~~L~~~a~~~gi~~~l~te~p~gt~T~LaigP~~~~~id~it~ 111 (116)
T cd02429 67 ALKNLSSKLTENSIKHKLWIEQPENIPTCIALKPYPKETVASYLK 111 (116)
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCCceEEEeCCCCHHHHHHHhC
Confidence 499999999999999999987 6888998877887666665544
No 229
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=28.12 E-value=1.7e+02 Score=28.57 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcccccCCCCC-hhHHHHHHHHH------------HHHcCCcEEEeecCCCCCCCccc
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYTCSKQMPG-SLGYEEQDAKT------------FALWGVDYLKYDNCYTDGSKPMD 193 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~------------~~~wGvdyiK~D~~~~~~~~~~~ 193 (415)
.|.+-+++++++|+|+-|-+.-.........+. ...+.+.+.+. |.+.+||.|-+|+-.... +
T Consensus 60 ~~~~dI~~cq~~G~KVlLSIGG~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~ 135 (280)
T cd02877 60 QLGADIKHCQSKGKKVLLSIGGAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----E 135 (280)
T ss_pred hHHHHHHHHHHCCCEEEEEccCCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----c
Confidence 399999999999999877554221111101111 22233333332 336789999999876532 5
Q ss_pred hHHHHHHHHHHc-----CCCEEEEe
Q 014963 194 RYPIMTRALMKA-----GRPIYYSL 213 (415)
Q Consensus 194 ~y~~~~~al~~~-----g~~i~~~~ 213 (415)
.|..|.++|++. +++.+|+.
T Consensus 136 ~~~~l~~~LR~~~~~~~~~~~~LTa 160 (280)
T cd02877 136 NYDALAKRLRSLFASDPSKKYYLTA 160 (280)
T ss_pred CHHHHHHHHHHHhhcccCCceEEEe
Confidence 788888888744 24566653
No 230
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=27.96 E-value=1.4e+02 Score=27.77 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 194 ~~~v~~~~~~gl~v~~wTvn~---------------~~~~~~l~~~gvdgiiTD~ 233 (234)
T cd08570 194 QAFLPELKKNGKKVFVWTVNT---------------EEDMRYAIRLGVDGVITDD 233 (234)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEeCC
Confidence 789999999999998887521 2357788899999998875
No 231
>PRK06256 biotin synthase; Validated
Probab=27.94 E-value=1.3e+02 Score=29.73 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
.+.+.|++.++.+++ .|+..|.|-.++... +...++ -+..+++.|+++ ..+-+....|
T Consensus 91 ~s~eeI~~~~~~~~~-----~g~~~~~l~~~g~~p----------~~~~~~-~~~e~i~~i~~~-~~i~~~~~~g----- 148 (336)
T PRK06256 91 LDIEELIEAAKEAIE-----EGAGTFCIVASGRGP----------SGKEVD-QVVEAVKAIKEE-TDLEICACLG----- 148 (336)
T ss_pred CCHHHHHHHHHHHHH-----CCCCEEEEEecCCCC----------CchHHH-HHHHHHHHHHhc-CCCcEEecCC-----
Confidence 578889999998844 455444443333322 101122 277778888775 3332333222
Q ss_pred CCCCChhHHHHHHHHHHHHcCCcEEEee
Q 014963 155 KQMPGSLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 155 ~~~pg~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
. --+..++.+++.|++.+-+.
T Consensus 149 -----~--l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 149 -----L--LTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred -----c--CCHHHHHHHHHhCCCEEecC
Confidence 1 12345677888888877653
No 232
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=27.88 E-value=89 Score=27.69 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=29.7
Q ss_pred cCceEEEeCCCccccCCCCCCCeee-cC-CCCCCcHHHHHHHHHHcCCeEEEEee
Q 014963 95 LGYEYVNIDDCWGEQVRDENGNLQA-KN-ATFPSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 95 ~G~~~~~IDdGW~~~~~d~~G~~~~-~~-~~FP~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
.|++.+++|-. |.+.. +. .-|| |+.++.++++++|++++|=++
T Consensus 23 ~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 23 VGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred CCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeC
Confidence 46788888831 22222 22 2344 699999999999999988665
No 233
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.78 E-value=3.5e+02 Score=23.71 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc---CCeEEEEeeCCcccc
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK---GLKLGMYSSAGYYTC 153 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~---Glk~Giw~~pg~~~c 153 (415)
-+...+.++.+ +++|.+.+.+-.-+.... .+ + +.++....+.+.+. ++.+-+|..|+..
T Consensus 64 ~~~~~~~a~~a-----~~~Gad~i~v~~~~~~~~---~~-------~-~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 64 TEVKVAEVEEA-----IDLGADEIDVVINIGSLK---EG-------D-WEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred HHHHHHHHHHH-----HHcCCCEEEEeccHHHHh---CC-------C-HHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 45556777766 556788887754443210 00 0 12455555555554 8899999987632
Q ss_pred cCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 154 SKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 154 ~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
...+.+....+...+-|+++||.-..
T Consensus 126 -----~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 -----KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred -----CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 11233444555667889999996553
No 234
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=27.74 E-value=3.5e+02 Score=24.13 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=55.4
Q ss_pred ccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHH
Q 014963 94 KLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFAL 173 (415)
Q Consensus 94 ~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~ 173 (415)
+.|++++.|=.+ .|.-..|+ -++.-.+.+++.|+++|+|+=+- ..+.+.+..-.+.+++.++.
T Consensus 20 ~~g~~fviikat--------eG~~~~D~-----~f~~n~~~a~~aGl~vG~Yhf~~----~~~~~~a~~eA~~f~~~~~~ 82 (177)
T cd06523 20 SKQLDLVIIRVQ--------YGSNYVDL-----KYKNNIKEFKKRGIPFGVYAFAR----GTSTADAKAEARDFYNRANK 82 (177)
T ss_pred hCCCCEEEEEEe--------CCCcccCH-----HHHHHHHHHHHcCCCeEEEEEec----cCCHHHHHHHHHHHHHHhcC
Confidence 347788887542 23223443 38888899999999999997431 11101122222333444444
Q ss_pred cCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC-C-EEEE
Q 014963 174 WGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR-P-IYYS 212 (415)
Q Consensus 174 wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~-~-i~~~ 212 (415)
.-.++=+|.-............++.+.+++.|. + ++++
T Consensus 83 -~~~~~~lD~E~~~~~~~~~~~~~f~~~v~~~g~~~~~lYt 122 (177)
T cd06523 83 -KPTFYVLDVEVTSMSDMNAGVQAFISELRRLGAKKVGLYI 122 (177)
T ss_pred -CCceEEEeeccCCcchHHHHHHHHHHHHHHccCCcEEEEc
Confidence 456667787543322222334567777877653 3 4554
No 235
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=27.64 E-value=54 Score=22.71 Aligned_cols=13 Identities=62% Similarity=1.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 014963 12 LICVLLSCLMVMA 24 (415)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (415)
+||+||.|+.|+.
T Consensus 39 licllli~iiv~l 51 (52)
T PF04272_consen 39 LICLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888764
No 236
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.57 E-value=1.6e+02 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEE 165 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~ 165 (415)
-.-|+.|++++|.|+++ ..|+-+.|++.+.++
T Consensus 117 ~~KLA~~lkk~~~kvll------VaaD~~RpAA~eQL~ 148 (451)
T COG0541 117 AGKLAKYLKKKGKKVLL------VAADTYRPAAIEQLK 148 (451)
T ss_pred HHHHHHHHHHcCCceEE------EecccCChHHHHHHH
Confidence 57899999999999987 345555566555443
No 237
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=27.38 E-value=57 Score=37.69 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEee
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
++.+++..|. +||+|+.++|.-+.. |++.+. .-|- ++.|.+-.+++|+.||+=++
T Consensus 251 ~~~~r~~~d~--------~g~~~~~~~~~~f~~------dl~~~~-a~~m-~~~l~~~~~~~~~~fgvk~t 305 (1019)
T PRK09853 251 YERVREILDK--------MGFDYIGLKEEHFDH------DLQYTD-AVEM-LERLMALAKEKGLGFGVKLT 305 (1019)
T ss_pred HHHHHHHHHh--------cCCceEecchhhccc------ccchhH-HHHH-HHHHHHHHHHcCceeeEEEe
Confidence 6666666664 499999999887753 222211 1121 68888888999999998765
No 238
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.31 E-value=2.2e+02 Score=27.90 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=44.5
Q ss_pred hccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCC-CCCCCeeecCCCCCCcHHH
Q 014963 52 LLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVR-DENGNLQAKNATFPSGIKA 130 (415)
Q Consensus 52 ~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~-d~~G~~~~~~~~FP~Gl~~ 130 (415)
-+.|.+.. +||. .........+|+..+.-+.+.. .-|.-.++.....-.... -..+......+.+=.++|.
T Consensus 10 ~l~NR~~~-~p~~-~~~~~~~g~~~~~~~~~y~~ra------~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
T cd02803 10 TLKNRIVM-APMT-ENMATEDGTPTDELIEYYEERA------KGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRK 81 (327)
T ss_pred eeccccEe-cccc-cccccCCCCCCHHHHHHHHHHh------CcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHH
Confidence 44555543 4552 1111123458888887777753 235555555544433210 0112221112223346999
Q ss_pred HHHHHHHcCCeEE
Q 014963 131 LADYVHSKGLKLG 143 (415)
Q Consensus 131 l~~~i~~~Glk~G 143 (415)
+++.+|+.|-|+.
T Consensus 82 ~~~~vh~~g~~~~ 94 (327)
T cd02803 82 LTEAVHAHGAKIF 94 (327)
T ss_pred HHHHHHhCCCHhh
Confidence 9999999998865
No 239
>PRK01060 endonuclease IV; Provisional
Probab=27.28 E-value=5.4e+02 Score=24.33 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEE-EEe-eCC-cccccCC
Q 014963 80 VKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLG-MYS-SAG-YYTCSKQ 156 (415)
Q Consensus 80 i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G-iw~-~pg-~~~c~~~ 156 (415)
+.+.++.+ +++||+.|.|.-+-- ..|... ..=|.-++.+-+.+++.|++++ +.. .|. .+.|...
T Consensus 14 ~~~~l~~~-----~~~G~d~vEl~~~~p-------~~~~~~-~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d 80 (281)
T PRK01060 14 LEGAVAEA-----AEIGANAFMIFTGNP-------QQWKRK-PLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPN 80 (281)
T ss_pred HHHHHHHH-----HHcCCCEEEEECCCC-------CCCcCC-CCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCC
Confidence 66777777 677888988842211 111100 0111237888888999999853 221 121 1122211
Q ss_pred CCC----hhHHHHHHHHHHHHcCCcEEEee
Q 014963 157 MPG----SLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 157 ~pg----~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
|. +.+++.+.++.-++.|..+|.+=
T Consensus 81 -~~~r~~s~~~~~~~i~~A~~lga~~vv~h 109 (281)
T PRK01060 81 -KEILEKSRDFLIQEIERCAALGAKLLVFH 109 (281)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 22 23446667777789999999983
No 240
>PRK15108 biotin synthase; Provisional
Probab=27.17 E-value=2.2e+02 Score=28.59 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
++.+.|.+.++.++ +.|++-|.+=-+|... ....|+ -+..+++.||+.|+...+ ..
T Consensus 76 ls~eEI~~~a~~~~-----~~G~~~i~i~~~g~~p----------~~~~~e-~i~~~i~~ik~~~i~v~~--s~------ 131 (345)
T PRK15108 76 MEVEQVLESARKAK-----AAGSTRFCMGAAWKNP----------HERDMP-YLEQMVQGVKAMGLETCM--TL------ 131 (345)
T ss_pred CCHHHHHHHHHHHH-----HcCCCEEEEEecCCCC----------CcchHH-HHHHHHHHHHhCCCEEEE--eC------
Confidence 68899999999884 4456666664444321 111222 488889999987765432 21
Q ss_pred CCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 155 KQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 155 ~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
|... +..++.|++.|+|.+-++.-
T Consensus 132 ----G~ls--~e~l~~LkeAGld~~n~~le 155 (345)
T PRK15108 132 ----GTLS--ESQAQRLANAGLDYYNHNLD 155 (345)
T ss_pred ----CcCC--HHHHHHHHHcCCCEEeeccc
Confidence 2122 55678899999998776653
No 241
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=27.15 E-value=1.3e+02 Score=29.81 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+.+++.+|+.|++..+|+--. ...++.+.++|||+|=.|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd---------------~~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINE---------------PWLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCC---------------HHHHHHHHhCCcCEEEeCCHH
Confidence 678889999999998887521 245788899999999999864
No 242
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.10 E-value=4.8e+02 Score=26.17 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.+++.|..+++ .|.+++ -.|=+.+ |.+...|+--. ..|++-|.+++++.|+.+-- ++.
T Consensus 105 s~e~~~~~A~~lk~-----~ga~~~--r~~~fKp-RTsp~sf~G~g---~~gL~~L~~~~~~~Gl~v~t--ev~------ 165 (335)
T PRK08673 105 SEEQILEIARAVKE-----AGAQIL--RGGAFKP-RTSPYSFQGLG---EEGLKLLAEAREETGLPIVT--EVM------ 165 (335)
T ss_pred CHHHHHHHHHHHHH-----hchhhc--cCcEecC-CCCCccccccc---HHHHHHHHHHHHHcCCcEEE--eeC------
Confidence 89999999999844 444422 1222222 33322332222 34899999999999998742 211
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
....++.+.+. +|++|+=-
T Consensus 166 --------d~~~~~~l~~~-vd~lqIgA 184 (335)
T PRK08673 166 --------DPRDVELVAEY-VDILQIGA 184 (335)
T ss_pred --------CHHHHHHHHHh-CCeEEECc
Confidence 22345666677 89999865
No 243
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=27.03 E-value=5.3e+02 Score=28.56 Aligned_cols=108 Identities=7% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccccccCccccccccccchhhhhhhccCCCCCCCceEEecccccC-----CCCCHHHHHHHHHH
Q 014963 12 LICVLLSCLMVMAAASSRATIMGKVSNTKFHHHSERLRRNLLANGLGKSPPMGWNSWNHFW-----CDINEDIVKAAADA 86 (415)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~GWnsW~~~~-----~~i~e~~i~~~ad~ 86 (415)
++.+.+.||+.++++ ..++. ++..+.+............-|.+-|-.-..-. ..++.+.+.++.+.
T Consensus 10 ~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~VL~YH~V~d~~~~~~~~~Vspe~Fe~qL~~ 80 (671)
T PRK14582 10 LMLVSILMLTACISQ-------SRTSF--IPPQDRPSLLAEQPWPHNGFVAIAYHDVEDEAADQRFMSVRTSALREQFAW 80 (671)
T ss_pred HHHHHHHHHHhhhhh-------ccccc--cCccccchhhhccccCCCceEEEEeCcccCCcccccccccCHHHHHHHHHH
Q ss_pred HHHcCCc-----------------ccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEe
Q 014963 87 LVSSGLS-----------------KLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYS 146 (415)
Q Consensus 87 l~~~gl~-----------------~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~ 146 (415)
|++.|+. +-..-.+..||||.+. ......-+++.|++.-+.+
T Consensus 81 Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~------------------yt~A~PILkkygvpATfFl 139 (671)
T PRK14582 81 LRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSF------------------YTRVFPILQAFQWPAVWAP 139 (671)
T ss_pred HHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCch------------------HHHHHHHHHHcCCCEEEEE
No 244
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.87 E-value=6.2e+02 Score=24.92 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCC--eEEEEeeCCcc
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGL--KLGMYSSAGYY 151 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl--k~Giw~~pg~~ 151 (415)
..+.+.++..++.+ .+.|++.|.+=. |..... | .+..+++++++.+. ++.|-++
T Consensus 44 ~ls~eei~~li~~~-----~~~Gv~~I~~tG----------GEPllr----~-dl~~li~~i~~~~~l~~i~itTN---- 99 (329)
T PRK13361 44 VLSLEELAWLAQAF-----TELGVRKIRLTG----------GEPLVR----R-GCDQLVARLGKLPGLEELSLTTN---- 99 (329)
T ss_pred CCCHHHHHHHHHHH-----HHCCCCEEEEEC----------cCCCcc----c-cHHHHHHHHHhCCCCceEEEEeC----
Confidence 47888899999988 445777777732 333322 3 38999999998764 4655433
Q ss_pred cccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 152 TCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 152 ~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
|. .+...++.+++.|++.|-+..
T Consensus 100 -------G~--ll~~~~~~L~~aGl~~v~ISl 122 (329)
T PRK13361 100 -------GS--RLARFAAELADAGLKRLNISL 122 (329)
T ss_pred -------hh--HHHHHHHHHHHcCCCeEEEEe
Confidence 11 134567889999999877655
No 245
>PRK12677 xylose isomerase; Provisional
Probab=26.63 E-value=6.4e+02 Score=25.73 Aligned_cols=106 Identities=17% Similarity=0.078 Sum_probs=55.3
Q ss_pred eEEecccccCCCC-CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCe
Q 014963 63 MGWNSWNHFWCDI-NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLK 141 (415)
Q Consensus 63 ~GWnsW~~~~~~i-~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk 141 (415)
+||..+..|+... ..-...+.++.+ +++||+.|.+.+.--. .|..+......-++.+.+.+++.|++
T Consensus 15 ~~~~~~~~~g~~~~~~~~~~E~v~~~-----a~~Gf~gVElh~~~l~-------p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 15 VGWQGRDPFGDATRPPLDPVEAVHKL-----AELGAYGVTFHDDDLV-------PFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHH-----HHhCCCEEEecccccC-------CCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 4566676666542 122355666766 5556776666321000 00000000011378899999999999
Q ss_pred EEEEeeCCcc----cc--cCCC--CChh----HHHHHHHHHHHHcCCcEEEe
Q 014963 142 LGMYSSAGYY----TC--SKQM--PGSL----GYEEQDAKTFALWGVDYLKY 181 (415)
Q Consensus 142 ~Giw~~pg~~----~c--~~~~--pg~~----~~~~~~~~~~~~wGvdyiK~ 181 (415)
+..-. ++.. .+ .-.+ |..+ ++....++.-++.|.+.|-+
T Consensus 83 v~~v~-~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv 133 (384)
T PRK12677 83 VPMVT-TNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVM 133 (384)
T ss_pred eEEEe-cCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 76432 1110 01 1111 3333 33556666678999999887
No 246
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=26.33 E-value=4.3e+02 Score=26.14 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeC
Q 014963 73 CDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSA 148 (415)
Q Consensus 73 ~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~p 148 (415)
..+..+...+.++.+ |++|++.|.+=--|.--+. ..|.+..... ..+..+++-+++.||.+-|+..|
T Consensus 19 ~r~p~~~W~~~l~k~-----ka~G~n~v~~yv~W~~he~-~~g~~df~g~---~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 19 FRIPPEYWRDRLQKM-----KAAGLNTVSTYVPWNLHEP-EEGQFDFTGN---RDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGS-GGGHHHHHHHH-----HHTT-SEEEEE--HHHHSS-BTTB---SGG---G-HHHHHHHHHHTT-EEEEEEES
T ss_pred ccCChhHHHHHHHHH-----HhCCcceEEEeccccccCC-CCCcccccch---hhHHHHHHHHHHcCcEEEecccc
Confidence 345677888888888 6777777777667754322 1344433211 24899999999999986666554
No 247
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=26.30 E-value=2.8e+02 Score=24.56 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=57.6
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFA 172 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 172 (415)
+..|++++.|=. ..|....|+ -++.-.+.+++.|+++|.|+-+-. | -.+..-.+..++.++
T Consensus 18 ~~~g~~fviik~--------t~G~~~~D~-----~~~~~~~~a~~aGl~~G~Yhy~~~--~----~~a~~qa~~fi~~~~ 78 (186)
T cd00599 18 KAAGIDFVFIKA--------TEGTTYVDP-----KFATNRARARAAGLLVGAYHFARP--C----ANAEAQADNFVNTVP 78 (186)
T ss_pred HhCCCcEEEEEE--------eCCCCccCh-----HHHHHHHHHHHCCCceEEEEEecC--C----CCHHHHHHHHHHHcc
Confidence 344677777631 234333443 477888899999999999987432 2 112333444555555
Q ss_pred Hc-CCcEEEeecCCCCCC----CccchHHHHHHHHHHcC--CCEEEE
Q 014963 173 LW-GVDYLKYDNCYTDGS----KPMDRYPIMTRALMKAG--RPIYYS 212 (415)
Q Consensus 173 ~w-GvdyiK~D~~~~~~~----~~~~~y~~~~~al~~~g--~~i~~~ 212 (415)
.. +--++=+|.-..... ...+...++.+.+++.+ +.+++.
T Consensus 79 ~~~~~~~~~lDvE~~~~~~~~~~~~~~~~~f~~~~~~~gg~~~~iY~ 125 (186)
T cd00599 79 RDPGSLPLVLDVEDTGGGCSAAALAAWLNAFLNEVEALTGKKPIIYT 125 (186)
T ss_pred CcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCCceEEEE
Confidence 54 455556666433221 12234456888888775 455664
No 248
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=26.23 E-value=64 Score=33.18 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE
Q 014963 79 IVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM 144 (415)
Q Consensus 79 ~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 144 (415)
.+..++++| |.+|++=|.+|-=|-..++...+..... |-+.|++.|++.|||.=.
T Consensus 17 ~~~~~L~~L-----K~~GV~GVmvdvWWGiVE~~~p~~ydWs------~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 17 ALEAQLRAL-----KSAGVDGVMVDVWWGIVEGEGPQQYDWS------GYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp HHHHHHHHH-----HHTTEEEEEEEEEHHHHTGSSTTB---H------HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHH-----HHcCCcEEEEEeEeeeeccCCCCccCcH------HHHHHHHHHHHcCCeEEE
Confidence 777888888 7789999999855544333333333332 689999999999999654
No 249
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.15 E-value=6.7e+02 Score=25.03 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEeC--CCccccCCCCCCCeeecCCCCCCcHHHHHHHHHH-cCCeEEEEeeC
Q 014963 72 WCDINEDIVKAAADALVSSGLSKLGYEYVNID--DCWGEQVRDENGNLQAKNATFPSGIKALADYVHS-KGLKLGMYSSA 148 (415)
Q Consensus 72 ~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~ID--dGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~-~Glk~Giw~~p 148 (415)
...++.+.+++.++.| .++|+++|-+= +|+... .+......+|+ ++.+..-... ++.|+..++.|
T Consensus 18 ~~~f~~~~~~~ia~~L-----d~aGV~~IEvg~g~gl~g~------s~~~G~~~~~~-~e~i~~~~~~~~~~~~~~ll~p 85 (333)
T TIGR03217 18 RHQFTIEQVRAIAAAL-----DEAGVDAIEVTHGDGLGGS------SFNYGFSAHTD-LEYIEAAADVVKRAKVAVLLLP 85 (333)
T ss_pred CCcCCHHHHHHHHHHH-----HHcCCCEEEEecCCCCCCc------cccCCCCCCCh-HHHHHHHHHhCCCCEEEEEecc
Confidence 3568999999999998 66688888762 233211 12222234443 4333322222 35688888876
Q ss_pred CcccccCCCCChhHHHHHHHHHHHHcCCcEEEee
Q 014963 149 GYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 149 g~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D 182 (415)
+.. . ..+++...+.|+|.|.+=
T Consensus 86 g~~--------~----~~dl~~a~~~gvd~iri~ 107 (333)
T TIGR03217 86 GIG--------T----VHDLKAAYDAGARTVRVA 107 (333)
T ss_pred Ccc--------C----HHHHHHHHHCCCCEEEEE
Confidence 531 0 123455556677776653
No 250
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=1.2e+02 Score=30.42 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCC
Q 014963 78 DIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQM 157 (415)
Q Consensus 78 ~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~ 157 (415)
++.++++|.+.+.|++.. +.-+.+=++|.. ..|- -++.|++++++.|+++-+=++|....-..-
T Consensus 16 ~~~~~Yi~~~~~~Gf~~I-Ftsl~~~~~~~~-------------~~~~-~~~ell~~Anklg~~vivDvnPsil~~l~~- 79 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRI-FTSLLIPEEDAE-------------LYFH-RFKELLKEANKLGLRVIVDVNPSILKELNI- 79 (360)
T ss_pred hhHHHHHHHHHHcCccce-eeecccCCchHH-------------HHHH-HHHHHHHHHHhcCcEEEEEcCHHHHhhcCC-
Confidence 345688888866555421 222333333322 1222 289999999999999988777653211100
Q ss_pred CChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 158 PGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 158 pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
+ -.....|.+.|+++|.+|+-..
T Consensus 80 --S----~~~l~~f~e~G~~glRlD~gfS 102 (360)
T COG3589 80 --S----LDNLSRFQELGVDGLRLDYGFS 102 (360)
T ss_pred --C----hHHHHHHHHhhhhheeecccCC
Confidence 0 1146778999999999998654
No 251
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=25.93 E-value=42 Score=32.79 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=66.9
Q ss_pred ceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEe--CCCccccCCCCCCCee-------------ecCCCCCC
Q 014963 62 PMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNI--DDCWGEQVRDENGNLQ-------------AKNATFPS 126 (415)
Q Consensus 62 p~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~I--DdGW~~~~~d~~G~~~-------------~~~~~FP~ 126 (415)
|+| .|.+..-.+.+.++++.+++..+++|+.. +...++ .+++... +.+|..- +|++=|-.
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~--iq~~~l~~~~~~~~~--n~~~~~~~~~~~~~~~d~~~~N~~YF~~ 89 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNV--IQMNVLPQWDGYNTP--NRYGFAPFPDEDPGQFDFTRPNPAYFDH 89 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--E--EEEES-SSSS-B------TTS-BS-SSTT------TT----HHHH
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCE--EEEEeCCCccccccc--ccCCCcCCCCCCccccCCCCCCHHHHHH
Confidence 455 34444445788899999999996665543 222222 2333221 1122221 23333333
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcc-----ccc--CCCC--ChhHHHHHHHHHHHHc-CCcEE-EeecCCCCCCCccchH
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYY-----TCS--KQMP--GSLGYEEQDAKTFALW-GVDYL-KYDNCYTDGSKPMDRY 195 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~-----~c~--~~~p--g~~~~~~~~~~~~~~w-Gvdyi-K~D~~~~~~~~~~~~y 195 (415)
+..+++++.++||.+.|=..=|.. |-. ...+ ....|.+-++++|++. .|=++ =-|. .......+.+
T Consensus 90 -~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~--~~~~~~~~~w 166 (289)
T PF13204_consen 90 -LDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY--FDTEKTRADW 166 (289)
T ss_dssp -HHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS----TTSSHHHH
T ss_pred -HHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc--CCCCcCHHHH
Confidence 789999999999998852110000 100 0111 1345667777888766 44333 1122 1223456677
Q ss_pred HHHHHHHHHcCC--CEEEEecC
Q 014963 196 PIMTRALMKAGR--PIYYSLCE 215 (415)
Q Consensus 196 ~~~~~al~~~g~--~i~~~~c~ 215 (415)
.+|.+.|++..+ .+-++.|.
T Consensus 167 ~~~~~~i~~~dp~~L~T~H~~~ 188 (289)
T PF13204_consen 167 DAMARGIKENDPYQLITIHPCG 188 (289)
T ss_dssp HHHHHHHHHH--SS-EEEEE-B
T ss_pred HHHHHHHHhhCCCCcEEEeCCC
Confidence 888888876543 45566553
No 252
>TIGR03356 BGL beta-galactosidase.
Probab=25.91 E-value=1.5e+02 Score=30.73 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHcCCcEEEeecCC----CC--CC---CccchHHHHHHHHHHcCCCEEEEecCCC
Q 014963 160 SLGYEEQDAKTFALWGVDYLKYDNCY----TD--GS---KPMDRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 160 ~~~~~~~~~~~~~~wGvdyiK~D~~~----~~--~~---~~~~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
.+.+++++++.+++.|++.+.+.-.- .. +. ...+.|..+.+.+++.|-..++.++.+.
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 45668999999999999999998631 12 11 1346888999999999988888877754
No 253
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=25.68 E-value=2.3e+02 Score=29.12 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCC---CccchHHHHHHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGS---KPMDRYPIMTRALMK 204 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~---~~~~~y~~~~~al~~ 204 (415)
.+.+..+++.+|.++|+|++.- + | .-|| .-..+.+-|+.|+|+-..+.+.. ...+.+....+-..+
T Consensus 50 ~~dl~~~l~~~~~~vgl~iDlt-n-t-------~ryy--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~ 118 (393)
T KOG2386|consen 50 PKDLFELLKEHNYKVGLKIDLT-N-T-------LRYY--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVD 118 (393)
T ss_pred HHHHHHHHHhcCceEEEEEecc-c-e-------eeee--ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHh
Confidence 6999999999999999999942 1 2 1223 12335788999999988777532 234455555554433
Q ss_pred ---cCCCEEEEecCCC
Q 014963 205 ---AGRPIYYSLCEWG 217 (415)
Q Consensus 205 ---~g~~i~~~~c~~g 217 (415)
--..++.-.|.-|
T Consensus 119 ~~~~~~~LI~vhcthG 134 (393)
T KOG2386|consen 119 DTKLDDELIGVHCTHG 134 (393)
T ss_pred cccCCCCEEEEeCCCc
Confidence 2346777789854
No 254
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=25.46 E-value=2.7e+02 Score=27.49 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=54.1
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcC-CeEEEEeeCCcccccCCCCChhHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKG-LKLGMYSSAGYYTCSKQMPGSLGYEEQ 166 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~G-lk~Giw~~pg~~~c~~~~pg~~~~~~~ 166 (415)
.++|.+.++|-|-|-.. ..++.| |. ++.+++.+++.| -.+.+++.-+ + . .
T Consensus 187 ieaGad~i~i~d~~~~~---------lsp~~f~ef~~P~-~k~i~~~i~~~~~~~~ilh~cg~------~----~----~ 242 (335)
T cd00717 187 IEAGAQAVQIFDSWAGA---------LSPEDFEEFVLPY-LKRIIEEVKKRLPGVPVILFAKG------A----G----G 242 (335)
T ss_pred HHhCCCEEEEeCccccc---------CCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEcCC------C----H----H
Confidence 45688888765555421 222233 33 799999999984 2233444422 1 1 4
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 167 DAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 167 ~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
..+.|++.|++.+-+|+.. .+.++.+..+..+.+.+
T Consensus 243 ~~~~~~~~~~~~~s~d~~~-----------dl~e~k~~~g~~~~i~G 278 (335)
T cd00717 243 LLEDLAQLGADVVGLDWRV-----------DLDEARKRLGPKVALQG 278 (335)
T ss_pred HHHHHHhcCCCEEEeCCCC-----------CHHHHHHHhCCCeEEEe
Confidence 5788899999999999873 24555556676777765
No 255
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.27 E-value=3.9e+02 Score=22.08 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 133 DYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 133 ~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
..|++.|+|-=|-.-|... .|+ +...+...+..++.|+.|+-+=.... ....+...++.++|.....+++..
T Consensus 21 ~~la~~GfktVInlRpd~E-----~~~-qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 21 AQLAAQGFKTVINLRPDGE-----EPG-QPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFADALESLPKPVLAH 92 (110)
T ss_dssp HHHHHCT--EEEE-S-TTS-----TTT--T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHCCCcEEEECCCCCC-----CCC-CCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3778899997665443211 111 22233345567789999987655442 234567788888888777777775
Q ss_pred ecCCC
Q 014963 213 LCEWG 217 (415)
Q Consensus 213 ~c~~g 217 (415)
|..|
T Consensus 93 -C~sG 96 (110)
T PF04273_consen 93 -CRSG 96 (110)
T ss_dssp --SCS
T ss_pred -CCCC
Confidence 9866
No 256
>PRK00957 methionine synthase; Provisional
Probab=25.10 E-value=1.4e+02 Score=29.26 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=49.4
Q ss_pred cCCCCC-HHHHHHHHHHHHHc--CCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHH-cCCeEEEEe
Q 014963 71 FWCDIN-EDIVKAAADALVSS--GLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHS-KGLKLGMYS 146 (415)
Q Consensus 71 ~~~~i~-e~~i~~~ad~l~~~--gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~-~Glk~Giw~ 146 (415)
++.+.. ++.+.+.++++.+. .|.++|+++++||+--... | . .+ +.-.+...+.+.+ .++..+++
T Consensus 129 ~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~-----~-~-~~----~~~~~~~~~~~~~~i~~~v~lH- 196 (305)
T PRK00957 129 FYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILST-----G-A-YD----LEVAKKAIDIITKGLNVPVAMH- 196 (305)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhc-----C-C-ch----HHHHHHHHHHHHHhhCCceEEE-
Confidence 444432 56666666655431 4577899999999854332 1 0 01 1112222333322 23344443
Q ss_pred eCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 147 SAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 147 ~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
.|+. ++.....+.+.|+|.|-+|+..
T Consensus 197 -----~CG~--------~~~i~~~l~~~~vd~i~ld~~~ 222 (305)
T PRK00957 197 -----VCGD--------VSNIIDDLLKFNVDILDHEFAS 222 (305)
T ss_pred -----ECCC--------cHHHHHHHHhCCCCEEEEeecC
Confidence 3422 3455677788999999999954
No 257
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.00 E-value=62 Score=30.75 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEE
Q 014963 79 IVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMY 145 (415)
Q Consensus 79 ~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 145 (415)
.+++.++.. +.+|.+++++=-+.... .......-+++-+.++.++++++++|+++++=
T Consensus 91 ~~~~~i~~a-----~~lGa~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 91 MIKLAMDMA-----KEMNAGYTLISAAHAGY----LTPPNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHH-----HHhCCCEEEEcCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 444445554 66788888884332211 01111112334457999999999999998764
No 258
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.96 E-value=2.1e+02 Score=28.61 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCC--Ccc---------ccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-C
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDD--CWG---------EQVRDENGNLQAKNATFPSGIKALADYVHSK-G 139 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDd--GW~---------~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-G 139 (415)
..|.++|.+..+.+++ ...+++|++-|.|=. ||- +.+.|++|-=..++.+| +..+++.|++. |
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~vg 206 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAVG 206 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHcC
Confidence 5888888887777653 233568999998887 652 12236666333344344 45777777764 4
Q ss_pred C--eEEEEeeCCcccccCCCCCh-hHHHHHHHHHHHHcC-CcEEEe
Q 014963 140 L--KLGMYSSAGYYTCSKQMPGS-LGYEEQDAKTFALWG-VDYLKY 181 (415)
Q Consensus 140 l--k~Giw~~pg~~~c~~~~pg~-~~~~~~~~~~~~~wG-vdyiK~ 181 (415)
. .+++=+.+.-... .|. .+-...+++.+.+.| +|||-+
T Consensus 207 ~~~~v~iRl~~~~~~~----~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 207 PDFIVGIRISGDEDTE----GGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CCCeEEEEeehhhccC----CCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 3 3444333211100 111 111234566677777 777766
No 259
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.80 E-value=2.3e+02 Score=26.50 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc
Q 014963 128 IKALADYVHSKGLKLGMYSSAGY 150 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~ 150 (415)
+..+.++||+.|+|+||=++|.+
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~T 117 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPAT 117 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCC
Confidence 78999999999999999999976
No 260
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.61 E-value=1.8e+02 Score=27.25 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEE
Q 014963 161 LGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 161 ~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~ 212 (415)
..+++..++.+.+.|+|++-+|.+...-.+...--..+.++|++.++++++.
T Consensus 18 ~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lD 69 (228)
T PTZ00170 18 FSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLD 69 (228)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEE
Confidence 4567889999999999999999875322111122236777777776555443
No 261
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.46 E-value=3.2e+02 Score=26.22 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 121 NATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 121 ~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
++.+|+-+| +.+++-...+|.|..... | ..++.++..|||||=+|.-+.
T Consensus 3 ~~~~~n~lk---~~l~~g~~~~g~~~~~~s-------p-------~~~e~~a~~G~D~v~iD~EHg 51 (256)
T PRK10558 3 NDVFPNKFK---AALAAKQVQIGCWSALAN-------P-------ITTEVLGLAGFDWLVLDGEHA 51 (256)
T ss_pred CCccCHHHH---HHHHcCCceEEEEEcCCC-------c-------HHHHHHHhcCCCEEEEccccC
Confidence 456777544 556655567999986431 1 246778899999999998765
No 262
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=24.42 E-value=54 Score=27.39 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=28.8
Q ss_pred CeEEEEeeCCc-ccccCCCCChhHH-H--HHHHHHHHHcCCcEEEeecCC
Q 014963 140 LKLGMYSSAGY-YTCSKQMPGSLGY-E--EQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 140 lk~Giw~~pg~-~~c~~~~pg~~~~-~--~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+++|.|+.--. .|...... ..++ + +.+++.++++||.+|-+|.--
T Consensus 10 L~~GM~V~~~~~~w~~~pfl-~~~f~I~s~~~I~~L~~~gi~~V~Id~~k 58 (128)
T PF11871_consen 10 LKPGMYVSRLDRSWLEHPFL-FQGFLIKSQADIEKLRRLGIQEVYIDPDK 58 (128)
T ss_pred CCCCcEEEecCCCccCCCee-eeceeECCHHHHHHHHHCCCcEEEEECCC
Confidence 57888886422 34332211 1222 2 567889999999999999743
No 263
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.40 E-value=1.4e+02 Score=29.83 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE--EeeCCccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM--YSSAGYYT 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi--w~~pg~~~ 152 (415)
.+.+.|++.++.+ .+.|++.|.|-+|.... ..+ +-+..+++.|++.+....+ +...+.+.
T Consensus 70 ls~eeI~e~~~~~-----~~~G~~~i~l~gG~~p~------------~~~-~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~ 131 (343)
T TIGR03551 70 LSLEEIAERAAEA-----WKAGATEVCIQGGIHPD------------LDG-DFYLDILRAVKEEVPGMHIHAFSPMEVYY 131 (343)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEeCCCCC------------CCH-HHHHHHHHHHHHHCCCceEEecCHHHHHH
Confidence 6899999999988 44567666665443321 011 1268999999987532221 11111110
Q ss_pred ccCCCCChhHHHHHHHHHHHHcCCcEEE
Q 014963 153 CSKQMPGSLGYEEQDAKTFALWGVDYLK 180 (415)
Q Consensus 153 c~~~~pg~~~~~~~~~~~~~~wGvdyiK 180 (415)
. .+..|.. .+..++.|++.|++.+-
T Consensus 132 ~-~~~~g~~--~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 132 G-ARNSGLS--VEEALKRLKEAGLDSMP 156 (343)
T ss_pred H-HHHcCCC--HHHHHHHHHHhCccccc
Confidence 0 0011211 25678899999999774
No 264
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=24.38 E-value=3.2e+02 Score=24.58 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCcEEEEEEecCCC-CeeEEeeccccC
Q 014963 346 GYRFAVLIVNRDQW-PANVTTHLEDFG 371 (415)
Q Consensus 346 ~g~~~Va~fN~~~~-~~~~~i~l~~lG 371 (415)
++..+|.+.|++.+ +.++++.++-+.
T Consensus 114 ~~~~~v~vvN~~~~~~~~~~l~l~g~~ 140 (189)
T smart00813 114 GGSLTVKVVNRSPEEAVTVTISLRGLK 140 (189)
T ss_pred CCEEEEEEEeCCCCcCEEEEEEecCCc
Confidence 34778999999754 788888887554
No 265
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=24.36 E-value=78 Score=28.26 Aligned_cols=85 Identities=26% Similarity=0.268 Sum_probs=46.3
Q ss_pred hhhhccCCCCCCCceEEecccccCCCCCHHHHHHHHHHHHHcCCc-ccCce-EEEeCCCccccCCCCCCCeeecCCCCCC
Q 014963 49 RRNLLANGLGKSPPMGWNSWNHFWCDINEDIVKAAADALVSSGLS-KLGYE-YVNIDDCWGEQVRDENGNLQAKNATFPS 126 (415)
Q Consensus 49 ~~~~~~~~~~~~pp~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~-~~G~~-~~~IDdGW~~~~~d~~G~~~~~~~~FP~ 126 (415)
...+...|+ |+| -++|..-.|.+...++|+.+.+. ++ ...-. .+.||-.+... ...+.+..-.
T Consensus 42 ~~~a~~aGl----~~G---~Yhf~~~~~~~~a~~qA~~f~~~-~~~~~~~~~~~~lD~E~~~~-------~~~~~~~~~~ 106 (181)
T PF01183_consen 42 IKNAKAAGL----PVG---AYHFARATNSSDAEAQADYFLNQ-VKGGDPGDLPPALDVEDDKS-------NNPSKSDNTA 106 (181)
T ss_dssp HHHHHHTTS----EEE---EEEE--TTTHCHHHHHHHHHHHC-THTSSTSCS-EEEEE-S-GG-------CCSSHHHHHH
T ss_pred HHHHHHcCC----eEE---EEEEeccCCcccHHHHHHHHHHH-hcccCCCcceEEEecccccc-------CCCCHHHHHH
Confidence 334444544 565 23344444788889999998763 21 11122 35677554311 0011111112
Q ss_pred cHHHHHHHHHH-cCCeEEEEeeC
Q 014963 127 GIKALADYVHS-KGLKLGMYSSA 148 (415)
Q Consensus 127 Gl~~l~~~i~~-~Glk~Giw~~p 148 (415)
-++.+++++++ .|.+++||...
T Consensus 107 ~~~~f~~~~~~~~G~~~~iY~~~ 129 (181)
T PF01183_consen 107 WVKAFLDEVEKAAGYKPGIYTSK 129 (181)
T ss_dssp HHHHHHHHHHHHCTSEEEEEEEH
T ss_pred HHHHHHHHHHHHhCCceeEeecH
Confidence 48999999955 89999999884
No 266
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=24.06 E-value=93 Score=30.74 Aligned_cols=86 Identities=21% Similarity=0.173 Sum_probs=51.1
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcCC-eEEEEeeCCcccccCCCCChhHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKGL-KLGMYSSAGYYTCSKQMPGSLGYEEQ 166 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~Gl-k~Giw~~pg~~~c~~~~pg~~~~~~~ 166 (415)
.++|.+.+.+-|.+.. ...++.| |. ++.+++.+|+.|. +.-++++. ....
T Consensus 192 ~~~G~d~i~~~d~~~~---------~isp~~f~e~~~P~-~k~i~~~i~~~g~~~~~lH~cG--------------~~~~ 247 (343)
T PF01208_consen 192 IEAGADGIFIFDSSGS---------LISPEMFEEFILPY-LKKIIDAIKEAGKDPVILHICG--------------NTTP 247 (343)
T ss_dssp HHTT-SEEEEEETTGG---------GS-HHHHHHHTHHH-HHHHHHHHHHHETE-EEEEETT--------------HG-G
T ss_pred HHhCCCcccccccccC---------CCCHHHHHHHHHHH-HHHHHHHHHHhCCCceEEEECC--------------chHH
Confidence 4678888777662221 1112222 44 8999999999998 65554442 1233
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 167 DAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 167 ~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
.+..+.+.|+|.+-+|... .+.++.++.|.++.+.+
T Consensus 248 ~~~~l~~~g~d~~~~~~~~-----------~~~~~~~~~~~~~~l~G 283 (343)
T PF01208_consen 248 ILDDLADLGADVLSVDEKV-----------DLAEAKRKLGDKIVLMG 283 (343)
T ss_dssp GHHHHHTSS-SEEEE-TTS------------HHHHHHHHTTSSEEEE
T ss_pred HHHHHHhcCCCEEEEcCCC-----------CHHHHHHHhCCCeEEEC
Confidence 5678889999999887654 24556667777776654
No 267
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.02 E-value=6.5e+02 Score=24.39 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
++.++++++++|+++-++++- ..|... -..+++...++.+.+.|++.|-+ +...+.-......++.+++++..+
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d--~~~~~r--~~~~~~~~~~~~~~~~G~~~i~l--~DT~G~~~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLED--WSNGMR--DSPDYVFQLVDFLSDLPIKRIML--PDTLGILSPFETYTYISDMVKRYP 190 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEe--CCCCCc--CCHHHHHHHHHHHHHcCCCEEEe--cCCCCCCCHHHHHHHHHHHHhhCC
Confidence 788899999999998877763 334321 12568888899999999986433 433333223345566666665544
Q ss_pred CE
Q 014963 208 PI 209 (415)
Q Consensus 208 ~i 209 (415)
++
T Consensus 191 ~~ 192 (280)
T cd07945 191 NL 192 (280)
T ss_pred CC
Confidence 33
No 268
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=23.97 E-value=4.3e+02 Score=24.57 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCCccccC-CCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCC-
Q 014963 79 IVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-RDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQ- 156 (415)
Q Consensus 79 ~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~- 156 (415)
...+..+.+ +++|++.|=|--+|.... .+..+ ..+.+.+- -|+.+++.++++||++-|=+.....||...
T Consensus 22 ~~~~~~~~~-----~~~G~n~VRi~v~~~~~~~~~~~~--~~~~~~~~-~ld~~v~~a~~~gi~vild~h~~~~w~~~~~ 93 (281)
T PF00150_consen 22 ITEADFDQL-----KALGFNTVRIPVGWEAYQEPNPGY--NYDETYLA-RLDRIVDAAQAYGIYVILDLHNAPGWANGGD 93 (281)
T ss_dssp SHHHHHHHH-----HHTTESEEEEEEESTSTSTTSTTT--SBTHHHHH-HHHHHHHHHHHTT-EEEEEEEESTTCSSSTS
T ss_pred CHHHHHHHH-----HHCCCCEEEeCCCHHHhcCCCCCc--cccHHHHH-HHHHHHHHHHhCCCeEEEEeccCcccccccc
Confidence 444555566 555777766666674432 11111 22222222 389999999999999755332211122211
Q ss_pred -C---CChhHHHH----HHHHHHH-HcCCcEEEeecCCCCCC--C-----------ccchHHHHHHHHHHcCCCE
Q 014963 157 -M---PGSLGYEE----QDAKTFA-LWGVDYLKYDNCYTDGS--K-----------PMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 157 -~---pg~~~~~~----~~~~~~~-~wGvdyiK~D~~~~~~~--~-----------~~~~y~~~~~al~~~g~~i 209 (415)
. +...+++. .+++.++ .-.+ +-+|-.+.... . -.+.|.++.++|++.++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~la~~y~~~~~v--~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 94 GYGNNDTAQAWFKSFWRALAKRYKDNPPV--VGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHTTTTTT--EEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccchhhHHHHHhhhhhhccccCCCCcE--EEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 0 11233333 3455553 2343 34565444221 1 1245667888999998754
No 269
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=23.93 E-value=2.3e+02 Score=28.59 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-C
Q 014963 74 DINEDIVKAAADALVS--SGLSKLGYEYVNIDDCW-----------GEQVRDENGNLQAKNATFPSGIKALADYVHSK-G 139 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdGW-----------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~-G 139 (415)
..|+++|.+.++.+++ ...+++|++-|.|-.+- .+.+.|++|-=..|+.||+ .++++.|++. |
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~---~Eiv~aVr~~vg 224 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLV---LEVVDAGIAEWG 224 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHH---HHHHHHHHHHcC
Confidence 4788888888777643 24466899999887653 2223466775455666765 4677777653 2
Q ss_pred C-eEEEEeeCCcccccCCCCCh-hHH-HHHHHHHHHHcCCcEEEeec
Q 014963 140 L-KLGMYSSAGYYTCSKQMPGS-LGY-EEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 140 l-k~Giw~~pg~~~c~~~~pg~-~~~-~~~~~~~~~~wGvdyiK~D~ 183 (415)
- .+|+=+++....+. ...|. .+- ....++.+.+.|+|||-+-.
T Consensus 225 ~~~igvRis~~~~~~~-~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 225 ADRIGIRISPLGTFNN-VDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCeEEEEECCcccccc-CCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 1 26665554311110 11121 111 24567788889999998753
No 270
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=23.80 E-value=4.5e+02 Score=25.18 Aligned_cols=18 Identities=28% Similarity=-0.008 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCcEEEee
Q 014963 165 EQDAKTFALWGVDYLKYD 182 (415)
Q Consensus 165 ~~~~~~~~~wGvdyiK~D 182 (415)
...++.+.+.|+|+|.+-
T Consensus 179 ~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 179 VELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 344455555566655554
No 271
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.73 E-value=6.2e+02 Score=25.64 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccC
Q 014963 76 NEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSK 155 (415)
Q Consensus 76 ~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 155 (415)
+++.+++.|+.+ ++.|.+++- .|-+.+ |.+...++--. -.|++-|.+..++.|+.+- +++.
T Consensus 113 s~eq~l~~A~~l-----k~~g~~~~r--~g~~kp-Rtsp~sf~G~g---~~gl~~L~~~~~e~Gl~~~--tev~------ 173 (352)
T PRK13396 113 NEEMIVETAKRV-----KAAGAKFLR--GGAYKP-RTSPYAFQGHG---ESALELLAAAREATGLGII--TEVM------ 173 (352)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEE--eeeecC-CCCCcccCCch---HHHHHHHHHHHHHcCCcEE--EeeC------
Confidence 799999999998 445666542 344443 32222221111 1378999999999998863 2221
Q ss_pred CCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 156 QMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 156 ~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
....++.+.+. +|++|+=-.
T Consensus 174 --------d~~~v~~~~~~-~d~lqIga~ 193 (352)
T PRK13396 174 --------DAADLEKIAEV-ADVIQVGAR 193 (352)
T ss_pred --------CHHHHHHHHhh-CCeEEECcc
Confidence 23345666666 899998653
No 272
>PRK05402 glycogen branching enzyme; Provisional
Probab=23.71 E-value=3.2e+02 Score=30.48 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=40.3
Q ss_pred eEEEEEcCC-CcEEEEEEecCCCCe-eEEeeccccCCCCCCeEEEEEecCCcccc--cc-----------------cCce
Q 014963 338 EIWTAPLSG-YRFAVLIVNRDQWPA-NVTTHLEDFGIPPKTSVTARDLWEHKTLE--TP-----------------LAGN 396 (415)
Q Consensus 338 ~vw~~~l~~-g~~~Va~fN~~~~~~-~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~--~~-----------------~~~~ 396 (415)
-++.|..++ ++.+|.++|.++.+. .+.|.+.. .. ..+++++.+... +. ....
T Consensus 636 laf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~-----~g--~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~ 708 (726)
T PRK05402 636 LSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ-----AG--RWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHS 708 (726)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCcccceEECCCC-----CC--eEEEEEcCcchhhCCCCCCCCCceeccccccCCCCCE
Confidence 345565333 567899999987653 34554432 12 345555543211 10 1235
Q ss_pred EEEEECCCcEEEEEEE
Q 014963 397 LSANLDPHTCKMYLLQ 412 (415)
Q Consensus 397 l~~~l~ph~~~ll~l~ 412 (415)
+.++|||-++.+|+..
T Consensus 709 ~~i~lp~~~~~v~~~~ 724 (726)
T PRK05402 709 LSLTLPPLATLILKPE 724 (726)
T ss_pred EEEEeCCCEEEEEEEc
Confidence 7889999999999875
No 273
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=23.58 E-value=3.3e+02 Score=26.73 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=51.7
Q ss_pred cccCceEEEeCCCccccCCCCCCCeeecCCCC-----CCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHH
Q 014963 93 SKLGYEYVNIDDCWGEQVRDENGNLQAKNATF-----PSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQD 167 (415)
Q Consensus 93 ~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~F-----P~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~ 167 (415)
.++|.+.++|.|-|-... ...++.| |. ++.+++.+|+ + +-+.+ .|+.. ...
T Consensus 181 ~eaGad~i~i~d~~a~~~-------~isp~~f~e~~~p~-~k~i~~~i~~-~--~~ilh-----~cG~~--------~~~ 236 (326)
T cd03307 181 LEAGADIITIADPTASPE-------LISPEFYEEFALPY-HKKIVKELHG-C--PTILH-----ICGNT--------TPI 236 (326)
T ss_pred HHcCCCEEEecCCCcccc-------ccCHHHHHHHHHHH-HHHHHHHHhc-C--CcEEE-----ECCCC--------hhH
Confidence 567999999999886421 1112222 33 7899999987 2 22222 24321 334
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 168 AKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 168 ~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
+..+++.|++.+-+|+... +.++.+..+..+.+.+
T Consensus 237 l~~~~~~g~d~~~~d~~~d-----------l~e~~~~~g~~~~i~G 271 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVD-----------VKTAKEIVGGRAALIG 271 (326)
T ss_pred HHHHHHcCCCeecccccCC-----------HHHHHHHcCCceEEEe
Confidence 6778889999988887531 3444455566665554
No 274
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=23.56 E-value=2.7e+02 Score=27.18 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=38.2
Q ss_pred ccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHH
Q 014963 94 KLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFAL 173 (415)
Q Consensus 94 ~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~ 173 (415)
++|.+.+++|-.|-. -++..++.++++..++-|=..-|.. ...+..|++
T Consensus 206 ~~GaDiI~lDn~~~e------------------~l~~~v~~l~~~~~~~~leasGGI~-------------~~ni~~ya~ 254 (277)
T TIGR01334 206 QASPDILQLDKFTPQ------------------QLHHLHERLKFFDHIPTLAAAGGIN-------------PENIADYIE 254 (277)
T ss_pred HcCcCEEEECCCCHH------------------HHHHHHHHHhccCCCEEEEEECCCC-------------HHHHHHHHh
Confidence 456777777743332 3899999998655555433332221 235677888
Q ss_pred cCCcEEEeecCC
Q 014963 174 WGVDYLKYDNCY 185 (415)
Q Consensus 174 wGvdyiK~D~~~ 185 (415)
-|+|+|-+=..+
T Consensus 255 ~GvD~is~gal~ 266 (277)
T TIGR01334 255 AGIDLFITSAPY 266 (277)
T ss_pred cCCCEEEeCcce
Confidence 999998765544
No 275
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=23.56 E-value=1.4e+02 Score=29.96 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCcEEEeecCCCCCC----------CccchHHHHHHHHHHcC
Q 014963 162 GYEEQDAKTFALWGVDYLKYDNCYTDGS----------KPMDRYPIMTRALMKAG 206 (415)
Q Consensus 162 ~~~~~~~~~~~~wGvdyiK~D~~~~~~~----------~~~~~y~~~~~al~~~g 206 (415)
.+++..++.++++|+|+|-+|+-+.... ...+.|..+++.|++..
T Consensus 94 ~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l 148 (345)
T cd02878 94 TFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKL 148 (345)
T ss_pred HHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 3678889999999999999999865321 12457888888887653
No 276
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.31 E-value=2.8e+02 Score=22.26 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=35.7
Q ss_pred CCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCc
Q 014963 114 NGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVD 177 (415)
Q Consensus 114 ~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvd 177 (415)
+|-+.-..+-+| |-.+++++++++|.++-+-++-.. .-.+...+.|+++||+
T Consensus 6 dGvl~~g~~~ip-ga~e~l~~L~~~g~~~~~lTNns~-----------~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 6 DGVLYNGNEPIP-GAVEALDALRERGKPVVFLTNNSS-----------RSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTTSEETTEE-T-THHHHHHHHHHTTSEEEEEES-SS-----------S-HHHHHHHHHHTTTT
T ss_pred ccEeEeCCCcCc-CHHHHHHHHHHcCCCEEEEeCCCC-----------CCHHHHHHHHHhcCcC
Confidence 455544555666 489999999999999877666321 1135567888999998
No 277
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=23.28 E-value=1.7e+02 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHH-cCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFAL-WGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~-wGvdyiK~D~ 183 (415)
+.+++.+|+.|+++.+|+--. ...++++.+ +||| |=.|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNT---------------PTEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHHhCCC-eecCC
Confidence 578999999999999998521 235778888 9999 76665
No 278
>PLN02161 beta-amylase
Probab=23.20 E-value=2.2e+02 Score=30.25 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 164 EEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
++...+.+++.|||.|-+|..-. +....-..|.++.+.+++.|..+
T Consensus 119 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 170 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKL 170 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 56677888999999999997421 12234568899999999988654
No 279
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.87 E-value=5.7e+02 Score=23.81 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcC
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAG 206 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g 206 (415)
-+...++++++.|+++-+.++.- ..| +-..+++...++.+.+.|++.|-+ +...+....+.+.++.+.+++..
T Consensus 116 ~~~~~i~~a~~~G~~v~~~~~~~-~~~----~~~~~~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 116 NAEEAIEAAKEAGLEVEGSLEDA-FGC----KTDPEYVLEVAKALEEAGADEISL--KDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEEEee-cCC----CCCHHHHHHHHHHHHHcCCCEEEe--chhcCCcCHHHHHHHHHHHHHhC
Confidence 38889999999999988777521 122 124677889999999999999885 22222223345556666666554
Q ss_pred C--CEEEE
Q 014963 207 R--PIYYS 212 (415)
Q Consensus 207 ~--~i~~~ 212 (415)
+ ++-++
T Consensus 189 ~~~~~~~H 196 (265)
T cd03174 189 PDVPLGLH 196 (265)
T ss_pred CCCeEEEE
Confidence 4 34444
No 280
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.86 E-value=3.6e+02 Score=25.32 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHc--CCeEEEEeeCCccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSK--GLKLGMYSSAGYYT 152 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~--Glk~Giw~~pg~~~ 152 (415)
.+...+.+.++.+ .+.|++++-|| -+ +|.+.||- .| |. .+++.+++. .+.+=+++.-.
T Consensus 13 ad~~~l~~~i~~l-----~~~g~d~lHiD----im----DG~FVPN~-tf--g~-~~i~~lr~~~~~~~~dvHLMv~--- 72 (223)
T PRK08745 13 ADFARLGEEVDNV-----LKAGADWVHFD----VM----DNHYVPNL-TI--GP-MVCQALRKHGITAPIDVHLMVE--- 72 (223)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEe----cc----cCccCCCc-cc--CH-HHHHHHHhhCCCCCEEEEeccC---
Confidence 3566788888888 56678899988 22 47777763 33 22 367777775 45665555521
Q ss_pred ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCCCEEEEe
Q 014963 153 CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGRPIYYSL 213 (415)
Q Consensus 153 c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~~i~~~~ 213 (415)
..+.+++.|++.|.|+|-+-+-.. ..-.++.+.+++.|-..-+.+
T Consensus 73 ----------~P~~~i~~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~g~k~Glal 117 (223)
T PRK08745 73 ----------PVDRIVPDFADAGATTISFHPEAS------RHVHRTIQLIKSHGCQAGLVL 117 (223)
T ss_pred ----------CHHHHHHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHCCCceeEEe
Confidence 134567788888988887655421 223456677777775554444
No 281
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=22.82 E-value=1.3e+03 Score=27.37 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccc
Q 014963 73 CDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYT 152 (415)
Q Consensus 73 ~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~ 152 (415)
.+..++.++..++.+ ++.|++.|-|=|...+. + .|+..++.+++.|...-.-++ ++
T Consensus 620 ~~ypd~vv~~f~~~~-----~~~GidifrifD~lN~~---------------~-n~~~~~~~~~~~g~~~~~~i~---yt 675 (1143)
T TIGR01235 620 TNYPDNVVKYFVKQA-----AQGGIDIFRVFDSLNWV---------------E-NMRVGMDAVAEAGKVVEAAIC---YT 675 (1143)
T ss_pred cCCCHHHHHHHHHHH-----HHcCCCEEEECccCcCH---------------H-HHHHHHHHHHHcCCEEEEEEE---Ee
Confidence 345677777888877 56678888875444332 1 499999999999988654333 11
Q ss_pred ccCCCCC----hhHHHHHHHHHHHHcCCcEEEe
Q 014963 153 CSKQMPG----SLGYEEQDAKTFALWGVDYLKY 181 (415)
Q Consensus 153 c~~~~pg----~~~~~~~~~~~~~~wGvdyiK~ 181 (415)
-....|. ..+|+.+.++.+.+.|++-|-+
T Consensus 676 ~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 676 GDILDPARPKYDLKYYTNLAVELEKAGAHILGI 708 (1143)
T ss_pred ccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1011111 3678889999999999986644
No 282
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.49 E-value=2.3e+02 Score=27.26 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcCCcEEEeec
Q 014963 164 EEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~ 183 (415)
+...++.+++.|++.+++-.
T Consensus 189 ~~~~~~~l~~l~~~~i~l~~ 208 (296)
T TIGR00433 189 RIGLALALANLPPESVPINF 208 (296)
T ss_pred HHHHHHHHHhCCCCEEEeee
Confidence 33444445555555555544
No 283
>PLN02803 beta-amylase
Probab=22.15 E-value=2.2e+02 Score=30.37 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 163 YEEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 163 ~~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
-++...+.+++.|||.|.+|..-. +....-..|.++.+.+++.|..+
T Consensus 108 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 108 AMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 366778889999999999997422 12234568999999999998754
No 284
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.10 E-value=2.8e+02 Score=27.83 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------cccCCCCCCCeeecCCCCCCcHHHHHHHHHHc-
Q 014963 73 CDINEDIVKAAADALVS--SGLSKLGYEYVNIDDCW-----------GEQVRDENGNLQAKNATFPSGIKALADYVHSK- 138 (415)
Q Consensus 73 ~~i~e~~i~~~ad~l~~--~gl~~~G~~~~~IDdGW-----------~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~- 138 (415)
...|+++|.+.++.+++ ...+++|++-|.|=.+- .+.+.|.+|-=..|..||+ .++++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~---~eii~~vr~~v 208 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFP---LAVVKAVQEVI 208 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHH---HHHHHHHHHHh
Confidence 35788888887776643 23466899999887642 1223455642234555654 4666777653
Q ss_pred ------CCeEEEEeeCCcccccCCCCCh--hHHHHHHHHHHHHcCCcEEEeec
Q 014963 139 ------GLKLGMYSSAGYYTCSKQMPGS--LGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 139 ------Glk~Giw~~pg~~~c~~~~pg~--~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
.+.+|+=+++.-. .+|- .+-....++.+.+.|+|||-+..
T Consensus 209 g~~~~~~~~v~~R~s~~~~-----~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 209 DKHADKDFILGYRFSPEEP-----EEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred ccccCCCceEEEEECcccc-----cCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 4555555553211 1111 12234567788899999998875
No 285
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.04 E-value=1.1e+02 Score=30.62 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHc--CCeEEEEeeCCcccc-----cCCCCCh-hHHHHHHHHHHHHcCCcEEEeecCCCCC----CCccc
Q 014963 126 SGIKALADYVHSK--GLKLGMYSSAGYYTC-----SKQMPGS-LGYEEQDAKTFALWGVDYLKYDNCYTDG----SKPMD 193 (415)
Q Consensus 126 ~Gl~~l~~~i~~~--Glk~Giw~~pg~~~c-----~~~~pg~-~~~~~~~~~~~~~wGvdyiK~D~~~~~~----~~~~~ 193 (415)
..++.+. .+|++ ++|+-|-+.-..... .-..|.. ..+++..++.++++|+|+|=+|+-.... ....+
T Consensus 56 ~~~~~~~-~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~ 134 (362)
T cd02872 56 GLYERFN-ALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKE 134 (362)
T ss_pred hHHHHHH-HHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHH
Confidence 3456654 45665 677665543211100 0112333 3467889999999999999999876542 12244
Q ss_pred hHHHHHHHHH----HcCCCEEEEecC
Q 014963 194 RYPIMTRALM----KAGRPIYYSLCE 215 (415)
Q Consensus 194 ~y~~~~~al~----~~g~~i~~~~c~ 215 (415)
.|..+++.|+ +.++.+.++.+.
T Consensus 135 ~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 135 NFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred HHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 6766665554 443345565443
No 286
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=21.88 E-value=6.3e+02 Score=23.27 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEE-EeeCCccc
Q 014963 74 DINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGM-YSSAGYYT 152 (415)
Q Consensus 74 ~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi-w~~pg~~~ 152 (415)
..+++...+....+ .+.|.+|+-||--+ + -++.+++.+|+.|.|.=+ |++.
T Consensus 72 ~~~~~~~~~ll~~~-----~~~~~d~vDiEl~~------------------~-~~~~~~~~~~~~~~kiI~S~H~f---- 123 (225)
T cd00502 72 EGSEEEYLELLEEA-----LKLGPDYVDIELDS------------------A-LLEELINSRKKGNTKIIGSYHDF---- 123 (225)
T ss_pred CCCHHHHHHHHHHH-----HHHCCCEEEEEecc------------------h-HHHHHHHHHHhCCCEEEEEeccC----
Confidence 46777777777766 34457899887322 1 288888888888887543 2221
Q ss_pred ccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 153 CSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 153 c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
...| ..+-+...++.+.++|.|.+|+=....
T Consensus 124 --~~tp-~~~~l~~~~~~~~~~gadivKla~~~~ 154 (225)
T cd00502 124 --SGTP-SDEELVSRLEKMAALGADIVKIAVMAN 154 (225)
T ss_pred --CCCc-CHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 1114 234455678889999999999977554
No 287
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.84 E-value=2.4e+02 Score=26.28 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCeEEEEee
Q 014963 130 ALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 130 ~l~~~i~~~Glk~Giw~~ 147 (415)
.+.+.+++.|+++..|.-
T Consensus 143 ~~~~~l~~~Gy~~v~w~v 160 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSL 160 (224)
T ss_pred HHHHHHHHcCCcEEeccc
Confidence 455666777777766653
No 288
>PLN00197 beta-amylase; Provisional
Probab=21.79 E-value=2.4e+02 Score=30.25 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 164 EEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
++...+.+++.|||.|-+|..-. +....-..|.++.+.+++.|..+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKl 180 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKV 180 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 66777889999999999997422 12234568999999999998754
No 289
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=21.73 E-value=2.1e+02 Score=28.86 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCC
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCY 185 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~ 185 (415)
+.+++.+|+.|+++-+|+--. ...++.+.++|||.|=.|+..
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN~---------------~~~~~~l~~~GVdgIiTD~P~ 254 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVNE---------------PWLYSLLWCSGVPSVTSDASH 254 (351)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEECCHH
Confidence 678999999999999987621 345788899999999999754
No 290
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.66 E-value=4.6e+02 Score=26.19 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
.+.|.++++++|+.|. .+|. -...++.+.+.|++++|+=-.
T Consensus 79 ~~~L~~~~~~~Gi~~~--stpf--------------d~~svd~l~~~~v~~~KI~S~ 119 (327)
T TIGR03586 79 HKELFERAKELGLTIF--SSPF--------------DETAVDFLESLDVPAYKIASF 119 (327)
T ss_pred HHHHHHHHHHhCCcEE--EccC--------------CHHHHHHHHHcCCCEEEECCc
Confidence 4789999999999874 2322 223457788899999999754
No 291
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.48 E-value=1.4e+02 Score=27.87 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeC
Q 014963 81 KAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSA 148 (415)
Q Consensus 81 ~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~p 148 (415)
.+.+..+.+.|+++-=.-||-||+.=... ++ +..--|- |+.+.+.++..|.++|||-..
T Consensus 92 ~~A~~~A~~lG~p~gs~IYfavD~d~~~~------~~--~~~v~~Y-~~a~~~~l~~~gY~~GiYg~~ 150 (212)
T cd06418 92 RDAVAAARALGFPPGTIIYFAVDFDALDD------EV--TEVILPY-FRGWNDALHEAGYRIGIYGSR 150 (212)
T ss_pred HHHHHHHHHcCCCCCCEEEEEeecCCCcc------hh--HHHHHHH-HHHHHHHHHhcCCceeEEcCh
Confidence 33444444556665445699998655432 11 1111122 899999999999999999874
No 292
>PRK06256 biotin synthase; Validated
Probab=21.38 E-value=3.9e+02 Score=26.29 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCC-CCC-----C--ccchHHHHH
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYT-DGS-----K--PMDRYPIMT 199 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~-~~~-----~--~~~~y~~~~ 199 (415)
....++.+|+.|++++..+-.|. ....+.....++.+++.|++.+-+-+..+ .+. . ..+.+.++.
T Consensus 189 ~i~~i~~a~~~Gi~v~~~~I~Gl-------gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~i 261 (336)
T PRK06256 189 RIDTCEMVKAAGIEPCSGGIIGM-------GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTI 261 (336)
T ss_pred HHHHHHHHHHcCCeeccCeEEeC-------CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHH
Confidence 55677788888988765444331 12345556677788899999988877643 221 1 123444555
Q ss_pred HHHHHcCCCEEEEec
Q 014963 200 RALMKAGRPIYYSLC 214 (415)
Q Consensus 200 ~al~~~g~~i~~~~c 214 (415)
..++-.-|+..|-.|
T Consensus 262 a~~Rl~~p~~~I~~~ 276 (336)
T PRK06256 262 AIFRLINPDKEIRIA 276 (336)
T ss_pred HHHHHHCCCCeeEec
Confidence 555666677777666
No 293
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=21.38 E-value=2e+02 Score=27.15 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 127 GIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 127 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
+|+++++.++..|++..|.++|.. ..++.-+++|.++|.+--
T Consensus 112 ~l~~~v~~L~~~GirVSLFiD~d~---------------~qi~aa~~~gA~~IELhT 153 (243)
T COG0854 112 KLRDAVRRLKNAGIRVSLFIDPDP---------------EQIEAAAEVGAPRIELHT 153 (243)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCCH---------------HHHHHHHHhCCCEEEEec
Confidence 599999999999999999999752 134555799999999863
No 294
>PLN02801 beta-amylase
Probab=21.32 E-value=2.5e+02 Score=29.76 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 164 EEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
++...+.+++.|||.|-+|..-. +....-..|.++.+.+++.|..+
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 56677888999999999997421 12233568899999999988654
No 295
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=21.31 E-value=3.7e+02 Score=29.69 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCeEE-----EEeeCCcccc----c---------------------------CCCCC--hhHHHH-HHH
Q 014963 128 IKALADYVHSKGLKLG-----MYSSAGYYTC----S---------------------------KQMPG--SLGYEE-QDA 168 (415)
Q Consensus 128 l~~l~~~i~~~Glk~G-----iw~~pg~~~c----~---------------------------~~~pg--~~~~~~-~~~ 168 (415)
-++-++.+++||+.++ |+++|+.... . ..+|- ++.-+. ..+
T Consensus 201 ~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal 280 (688)
T TIGR02455 201 LPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDAL 280 (688)
T ss_pred cHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHH
Confidence 3778899999999876 6777763211 0 01344 444454 567
Q ss_pred HHHHHcCCcEEEeecC
Q 014963 169 KTFALWGVDYLKYDNC 184 (415)
Q Consensus 169 ~~~~~wGvdyiK~D~~ 184 (415)
+.+.+.|++.+.+|.+
T Consensus 281 ~~w~~lG~~GfRLDAv 296 (688)
T TIGR02455 281 HAIDCLGARGLRLDAN 296 (688)
T ss_pred HHHHHhccccceeccc
Confidence 7888999999999954
No 296
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=21.30 E-value=3.1e+02 Score=29.13 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCcEEEEEEecCCCCeeEEeeccccCCCCCCeEEEEEecCCcccccccCceEEEEECCCcEE
Q 014963 337 VEIWTAPLSGYRFAVLIVNRDQWPANVTTHLEDFGIPPKTSVTARDLWEHKTLETPLAGNLSANLDPHTCK 407 (415)
Q Consensus 337 ~~vw~~~l~~g~~~Va~fN~~~~~~~~~i~l~~lGL~~~~~~~v~Dlw~g~~l~~~~~~~l~~~l~ph~~~ 407 (415)
+++-+-...||+.+|.++|.+++++.++|.+.+-. . -...+.++||||+..
T Consensus 441 l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~-------------~-------~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 441 LEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGS-------------K-------GNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEEEEEETTSEEEEEEEE-SSS-EEEEEEEECTT-------------T-------EE--EEEEEE-TTEE
T ss_pred eeEEEEECCCCCEEEEEEcCCCCccceEEEEecCC-------------c-------ceeEEEEEeCCCceE
Confidence 44555555789999999999988887666643111 0 113467889998754
No 297
>PLN02705 beta-amylase
Probab=21.19 E-value=2.5e+02 Score=30.58 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 164 EEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
++...+.+++.|||.|-+|..-. +....-..|.++.+.+++.|..+
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 321 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL 321 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 56677889999999999997422 12234568999999999999754
No 298
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.18 E-value=1.8e+02 Score=25.89 Aligned_cols=44 Identities=34% Similarity=0.389 Sum_probs=29.3
Q ss_pred HHHHcCCeEEEEeeCCc--ccccCC-CCChhHHHHHHHHHHHHcCCcEEEe
Q 014963 134 YVHSKGLKLGMYSSAGY--YTCSKQ-MPGSLGYEEQDAKTFALWGVDYLKY 181 (415)
Q Consensus 134 ~i~~~Glk~Giw~~pg~--~~c~~~-~pg~~~~~~~~~~~~~~wGvdyiK~ 181 (415)
..--+|-|+=|..-||. .+|.-+ .|| |....+.|++.|||-|-.
T Consensus 32 ~~lf~gKkVvlf~lPGAFTPTCS~~hlPg----Y~~~~d~f~~kGVD~I~c 78 (165)
T COG0678 32 DDLFKGKKVVLFSLPGAFTPTCSSSHLPG----YLELADEFKAKGVDEIYC 78 (165)
T ss_pred HHhcCCCEEEEEeCCCccCCCcccccCcc----HHHHHHHHHHcCCceEEE
Confidence 33345668888887864 578764 477 455566777888887643
No 299
>PLN02389 biotin synthase
Probab=21.13 E-value=4.7e+02 Score=26.66 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCccccc
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCS 154 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 154 (415)
++.+.|++.++.+++ .|++.|.|=..|... .+. +..|+. +..+++.|++.|+.+. ..
T Consensus 116 Ls~EeIl~~a~~~~~-----~G~~~~~ivts~rg~----~~e----~~~~e~-i~eiir~ik~~~l~i~--~s------- 172 (379)
T PLN02389 116 MSKDDVLEAAKRAKE-----AGSTRFCMGAAWRDT----VGR----KTNFNQ-ILEYVKEIRGMGMEVC--CT------- 172 (379)
T ss_pred CCHHHHHHHHHHHHH-----cCCCEEEEEecccCC----CCC----hhHHHH-HHHHHHHHhcCCcEEE--EC-------
Confidence 689999999998844 456666653334221 111 112333 7788888887665532 22
Q ss_pred CCCCChhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 155 KQMPGSLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 155 ~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
.|. -.+..++.|++.|+|.+-++.-
T Consensus 173 ---~G~--l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 173 ---LGM--LEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred ---CCC--CCHHHHHHHHHcCCCEEEeeec
Confidence 121 1256788899999999877654
No 300
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.09 E-value=2.9e+02 Score=27.01 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCC-hhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPG-SLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+...++.+++.|+++...+-.|. || ..+.+...++.+.+.++++||+=..
T Consensus 165 ~~~ai~~l~~~gi~v~~~lI~Gl-------Pget~e~~~~t~~~l~~l~~d~i~i~~l 215 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCSHVILGL-------PGEDREEMMETAKIVSLLDVDGIKIHPL 215 (302)
T ss_pred HHHHHHHHHHcCCEEEEeEEECC-------CCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 56666777777777766655442 33 3455666777777888888887443
No 301
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.07 E-value=6.9e+02 Score=23.36 Aligned_cols=102 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCCcccccCC---
Q 014963 80 VKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQ--- 156 (415)
Q Consensus 80 i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~--- 156 (415)
+.+.++.+ +++||+.|-|-. +... .++.+.+.+++.|+++....-|...+....
T Consensus 17 l~~~l~~~-----a~~Gf~~VEl~~-~~~~-----------------~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 73 (258)
T PRK09997 17 FLARFEKA-----AQCGFRGVEFMF-PYDY-----------------DIEELKQVLASNKLEHTLHNLPAGDWAAGERGI 73 (258)
T ss_pred HHHHHHHH-----HHhCCCEEEEcC-CCCC-----------------CHHHHHHHHHHcCCcEEEEcCCCCccccCcCcc
Q ss_pred ------CCChhHHHHHHHHHHHHcCCcEEEe-ecCCCCCCCccchHHHHHHHHHH
Q 014963 157 ------MPGSLGYEEQDAKTFALWGVDYLKY-DNCYTDGSKPMDRYPIMTRALMK 204 (415)
Q Consensus 157 ------~pg~~~~~~~~~~~~~~wGvdyiK~-D~~~~~~~~~~~~y~~~~~al~~ 204 (415)
.+....+++..++..++.|..+|-+ -.....+....+.+..+.+.|++
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~ 128 (258)
T PRK09997 74 ACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRY 128 (258)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
No 302
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.81 E-value=7e+02 Score=23.37 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=56.8
Q ss_pred ceEEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCe
Q 014963 62 PMGWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLK 141 (415)
Q Consensus 62 p~GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk 141 (415)
++|.||+... +. .+.+.++.+ +++||++|-| |... ...+.++ .=..+++.+.+.+++.|++
T Consensus 2 ~lg~~t~~~~--~~---~l~~~l~~~-----~~~G~~~vEl---~~~~----~~~~~~~--~~~~~~~~l~~~~~~~gl~ 62 (275)
T PRK09856 2 KTGMFTCGHQ--RL---PIEHAFRDA-----SELGYDGIEI---WGGR----PHAFAPD--LKAGGIKQIKALAQTYQMP 62 (275)
T ss_pred ceeeeehhhe--eC---CHHHHHHHH-----HHcCCCEEEE---ccCC----ccccccc--cCchHHHHHHHHHHHcCCe
Confidence 3567775422 22 356666766 5668888887 3211 0001111 0113689999999999999
Q ss_pred EEEEee-CCcccccC--CCCC----hhHHHHHHHHHHHHcCCcEEEeecC
Q 014963 142 LGMYSS-AGYYTCSK--QMPG----SLGYEEQDAKTFALWGVDYLKYDNC 184 (415)
Q Consensus 142 ~Giw~~-pg~~~c~~--~~pg----~~~~~~~~~~~~~~wGvdyiK~D~~ 184 (415)
+-.+.. ...+.+.. ..+. ..++++..++.-+.+|.+.+-+=..
T Consensus 63 v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 63 IIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred EEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 743221 11111110 1111 2334566777788999999987443
No 303
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=20.81 E-value=1.3e+02 Score=30.90 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCcEEEeecCCC
Q 014963 162 GYEEQDAKTFALWGVDYLKYDNCYT 186 (415)
Q Consensus 162 ~~~~~~~~~~~~wGvdyiK~D~~~~ 186 (415)
.+++..++.++++|||+|=+|+-++
T Consensus 108 ~Fi~siv~~l~~~~fDGidiDWEyP 132 (413)
T cd02873 108 AFINSAHSLLKTYGFDGLDLAWQFP 132 (413)
T ss_pred HHHHHHHHHHHHcCCCCeEeeeeCC
Confidence 4678899999999999999998765
No 304
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=20.79 E-value=2.7e+02 Score=26.92 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEe
Q 014963 78 DIVKAAADALVSSGLSKLGYEYVNI 102 (415)
Q Consensus 78 ~~i~~~ad~l~~~gl~~~G~~~~~I 102 (415)
+...+.++.|.+.+++ ..+|++
T Consensus 98 ~~t~~iL~iLkk~~vk---ATFFv~ 119 (268)
T TIGR02873 98 EYLPEILQILKKHDVK---ATFFLE 119 (268)
T ss_pred chHHHHHHHHHHCCCC---EEEEee
Confidence 4445666667665655 356665
No 305
>PRK13561 putative diguanylate cyclase; Provisional
Probab=20.70 E-value=2.1e+02 Score=31.06 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHH-HHHHHHHHcC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYP-IMTRALMKAG 206 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~-~~~~al~~~g 206 (415)
...+++.+|+.|++++|= +.|.. ..+.. ....+++..+||||+|-.........+.+. .+.+..+..|
T Consensus 536 ~~~~~~~l~~~G~~i~ld-dfG~g------~ssl~----~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~ 604 (651)
T PRK13561 536 AVAILRPLRNAGVRVALD-DFGMG------YAGLR----QLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLN 604 (651)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCCC------cccHH----HHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 566677777777777651 11100 00111 233456689999999965432222122222 2333335567
Q ss_pred CCEEEEec
Q 014963 207 RPIYYSLC 214 (415)
Q Consensus 207 ~~i~~~~c 214 (415)
-.++.++.
T Consensus 605 i~viAegV 612 (651)
T PRK13561 605 LQVIAEGV 612 (651)
T ss_pred CcEEEecC
Confidence 67766653
No 306
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=20.65 E-value=1.8e+02 Score=30.59 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHcCCcEEEeecCCC----CC------CCccchHHHHHHHHHHcCCCEEEEecCCC
Q 014963 160 SLGYEEQDAKTFALWGVDYLKYDNCYT----DG------SKPMDRYPIMTRALMKAGRPIYYSLCEWG 217 (415)
Q Consensus 160 ~~~~~~~~~~~~~~wGvdyiK~D~~~~----~~------~~~~~~y~~~~~al~~~g~~i~~~~c~~g 217 (415)
.+.+++++++.++++|++.+++=-+-. .+ ....+.|..+.++|++.|-..++.+++|.
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~ 136 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFD 136 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCC
Confidence 355679999999999999999875421 11 12356899999999999988888888765
No 307
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.64 E-value=8.3e+02 Score=24.64 Aligned_cols=84 Identities=15% Similarity=0.034 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeecCCCCCCCccchHHHHHHHHHHcCC
Q 014963 128 IKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDNCYTDGSKPMDRYPIMTRALMKAGR 207 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~~~~~~~~~~~~y~~~~~al~~~g~ 207 (415)
+++++++.++.|+++-.++.-. ..|.....-..+++...++.+.+.|++.|-+ +...+.-......++.++|++..+
T Consensus 164 ~~~~v~~Ak~~Gl~v~~~is~~-fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l--~DT~G~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 164 YREVALAAKKHSIPVRGYVSCV-VGCPIEGPVPPSKVAYVAKELYDMGCYEISL--GDTIGVGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEEee-ecCCccCCCCHHHHHHHHHHHHHcCCCEEEe--cCCcCCcCHHHHHHHHHHHHHhCC
Confidence 5678888889998887666421 1232221223567788888888899887544 222222223344556666655433
Q ss_pred --CEEEEecC
Q 014963 208 --PIYYSLCE 215 (415)
Q Consensus 208 --~i~~~~c~ 215 (415)
++-++ |+
T Consensus 241 ~~~i~~H-~H 249 (347)
T PLN02746 241 VDKLAVH-FH 249 (347)
T ss_pred CCeEEEE-EC
Confidence 34454 54
No 308
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.62 E-value=64 Score=28.71 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEeeCC
Q 014963 77 EDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSSAG 149 (415)
Q Consensus 77 e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg 149 (415)
-+.+++.++.+ +.+|.+++++--|+... ........+-+++=..|+.+++++.+.|+++.|-..++
T Consensus 70 ~~~~~~~i~~a-----~~lg~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLA-----KRLGAKYIVVHSGRYPS--GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHH-----HHHTBSEEEEECTTESS--STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHH-----HHhCCCceeecCccccc--ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 56777888877 66788999998773211 00111122223333469999999999999998876654
No 309
>PLN02905 beta-amylase
Probab=20.52 E-value=2.5e+02 Score=30.68 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCcEEEeecCCC------CCCCccchHHHHHHHHHHcCCCE
Q 014963 164 EEQDAKTFALWGVDYLKYDNCYT------DGSKPMDRYPIMTRALMKAGRPI 209 (415)
Q Consensus 164 ~~~~~~~~~~wGvdyiK~D~~~~------~~~~~~~~y~~~~~al~~~g~~i 209 (415)
++...+.+++.|||.|.+|..-. +....-..|.++.+.+++.|..+
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl 339 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL 339 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 56777889999999999997422 12234568999999999999754
No 310
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=20.50 E-value=1.7e+02 Score=26.71 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcCCcEEEeec
Q 014963 129 KALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWGVDYLKYDN 183 (415)
Q Consensus 129 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyiK~D~ 183 (415)
..+++.+|+.|+++-.|+--. +. ...++++.++|||.|=.|+
T Consensus 212 ~~~v~~~~~~g~~v~~wtvn~--------~~-----~~~~~~l~~~gvdgIiTD~ 253 (256)
T PF03009_consen 212 PRLVQEAHKAGLKVYVWTVND--------PD-----VEDMKRLLDLGVDGIITDF 253 (256)
T ss_dssp HHHHHHHHHTT-EEEEBSB-S--------HS-----HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHCCCEEEEEecCC--------cH-----HHHHHHHHhCCCCEEEEcC
Confidence 579999999999998886521 11 3567888999999998886
No 311
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=20.35 E-value=1e+02 Score=28.01 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHcCC-eEEEEeeC
Q 014963 127 GIKALADYVHSKGL-KLGMYSSA 148 (415)
Q Consensus 127 Gl~~l~~~i~~~Gl-k~Giw~~p 148 (415)
-++.+++.+++.|. +++||..+
T Consensus 110 ~~~~F~~~v~~~g~~~~~iY~~~ 132 (192)
T cd06522 110 NVNAFWQTMKAAGYKNTDVYTSA 132 (192)
T ss_pred HHHHHHHHHHHcCCCCcEEEccH
Confidence 47999999999998 89999985
No 312
>PHA02119 hypothetical protein
Probab=20.27 E-value=96 Score=23.60 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=19.8
Q ss_pred eeecCCCCCCcH-HHHHHHHHHcCCeE
Q 014963 117 LQAKNATFPSGI-KALADYVHSKGLKL 142 (415)
Q Consensus 117 ~~~~~~~FP~Gl-~~l~~~i~~~Glk~ 142 (415)
+..+..|||.=+ +.++||+++.|...
T Consensus 44 isf~~~kfp~i~~~divdylr~lgy~~ 70 (87)
T PHA02119 44 ISFDVAKFPAIMPKDIVDYLRSLGYDA 70 (87)
T ss_pred EEeccccCCccccHHHHHHHHHccchh
Confidence 345668999632 89999999998653
No 313
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.21 E-value=7e+02 Score=24.90 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=43.7
Q ss_pred hhccCCCCCCCce--EEecccccCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCccccC-CCCCCCeeecCCCCCCc
Q 014963 51 NLLANGLGKSPPM--GWNSWNHFWCDINEDIVKAAADALVSSGLSKLGYEYVNIDDCWGEQV-RDENGNLQAKNATFPSG 127 (415)
Q Consensus 51 ~~~~~~~~~~pp~--GWnsW~~~~~~i~e~~i~~~ad~l~~~gl~~~G~~~~~IDdGW~~~~-~d~~G~~~~~~~~FP~G 127 (415)
.-+.|.+.. +|| +++.. ..++++.+.-+.+.. + -|+-.+++-...-... +-..+......+.+=.|
T Consensus 10 ~~lkNRiv~-~p~~~~~~~~----~~~~~~~~~~y~~rA-~-----gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~ 78 (353)
T cd02930 10 TTLRNRVLM-GSMHTGLEEL----DDGIDRLAAFYAERA-R-----GGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAG 78 (353)
T ss_pred EEEccccEe-CCccccccCC----CCCCHHHHHHHHHHh-c-----CCceEEEEeeEEeCCcccCCCCCcccCCHHHHHH
Confidence 345666644 355 33332 246887776666643 2 2444443322221110 00012222223334447
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 014963 128 IKALADYVHSKGLKLGMYS 146 (415)
Q Consensus 128 l~~l~~~i~~~Glk~Giw~ 146 (415)
++.+++.+|+.|-|+.+=+
T Consensus 79 ~~~l~~~vh~~g~~~~~QL 97 (353)
T cd02930 79 HRLITDAVHAEGGKIALQI 97 (353)
T ss_pred HHHHHHHHHHcCCEEEeec
Confidence 9999999999999976543
No 314
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=20.09 E-value=6.1e+02 Score=22.38 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHcCCeEEEEeeCCcccccCCCCChhHHHHHHHHHHHHcC-CcEEEeecCCCCCC-------C-cc-c
Q 014963 124 FPSGIKALADYVHSKGLKLGMYSSAGYYTCSKQMPGSLGYEEQDAKTFALWG-VDYLKYDNCYTDGS-------K-PM-D 193 (415)
Q Consensus 124 FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wG-vdyiK~D~~~~~~~-------~-~~-~ 193 (415)
.|+ +..+++++++.|++..|.++. . ....++.+.+.| +++|.+|....... . .. +
T Consensus 76 ~~~-l~~li~~~~~~g~~v~i~TNg-----------~---~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~ 140 (191)
T TIGR02495 76 QAG-LPDFLRKVRELGFEVKLDTNG-----------S---NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSN 140 (191)
T ss_pred cHh-HHHHHHHHHHCCCeEEEEeCC-----------C---CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHH
Confidence 355 999999999999877664431 1 123456667778 69999988754221 0 01 1
Q ss_pred hHHHHHHHHHHcCCCEEEE
Q 014963 194 RYPIMTRALMKAGRPIYYS 212 (415)
Q Consensus 194 ~y~~~~~al~~~g~~i~~~ 212 (415)
...+..+.+.+.|..+.+.
T Consensus 141 ~~~~~i~~l~~~gi~~~i~ 159 (191)
T TIGR02495 141 NILKSLEILLRSGIPFELR 159 (191)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3334445556677666655
No 315
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=20.02 E-value=70 Score=32.30 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe-CCCccccCCCCCCCeeecCCCCCCcHHHHHHHHHHcCCeEEEEee
Q 014963 75 INEDIVKAAADALVSSGLSKLGYEYVNI-DDCWGEQVRDENGNLQAKNATFPSGIKALADYVHSKGLKLGMYSS 147 (415)
Q Consensus 75 i~e~~i~~~ad~l~~~gl~~~G~~~~~I-DdGW~~~~~d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~ 147 (415)
.+++.+.+.++.| +++|+++|-| .-.|...+.. .|.+... .+..+++.+++.|+|+-|-+.
T Consensus 7 ~~~e~~~~d~~~m-----~~~G~n~vri~~~~W~~lEP~-eG~ydF~------~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLM-----KEAGFNTVRIGEFSWSWLEPE-EGQYDFS------WLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp S-CCHHHHHHHHH-----HHHT-SEEEE-CCEHHHH-SB-TTB---H------HHHHHHHHHHCTT-EEEEEEC
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEEechhhccCC-CCeeecH------HHHHHHHHHHhccCeEEEEec
Confidence 4568888999988 7778899987 5578654222 3544333 399999999999999887664
Done!