BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014966
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 145/344 (42%), Gaps = 51/344 (14%)
Query: 83 EESRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPDI-RGSKPGDERKFEDVYDVN 141
+E+ GY+ G S I +AV+ AR++ ATLV+P++ S D+ F+ +YDV
Sbjct: 86 KETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVE 145
Query: 142 KFIRSLDGVVKVVKELPEEISFRNLAVVKVPN---RVTEDHIIENIQPIFKAKGNIRLAT 198
FI +L VK+V ++P+ +N K+ R D IE A
Sbjct: 146 HFIETLKYDVKIVGKIPD--VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAI 203
Query: 199 YFPSVNMRKSTEKSNADL--VACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIA 256
Y + R + E N + + C + L +P + ++ +S+V++LR S G F++
Sbjct: 204 YLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLR-----SQGHFMS 258
Query: 257 VDLR--VDLLDNKGCHE------------------------GNGRKS---C-YGAHEIAV 286
+ LR +D+L GC + N R++ C E+ +
Sbjct: 259 IHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGL 318
Query: 287 FLRKIGYDKDTTIYLTQSRW---DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEF 343
LR + +D T IYL + + + +FP+ +N D E+ ++
Sbjct: 319 ILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLI 375
Query: 344 EKVIDFYLCSQSDAFVPAISGL--FYANVAGKRIASGKNQILIP 385
+D+ +C SD F+P G F N+ G R+ G + P
Sbjct: 376 GSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRP 419
>sp|Q9QSK4|VF022_IIV6 Putative helicase 022L OS=Invertebrate iridescent virus 6 GN=NTP1
PE=3 SV=1
Length = 1171
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Query: 195 RLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRT--LSRKSDG 252
R +T + S N R K++ L + F T E + V+++R+ + +K D
Sbjct: 156 RCSTNYSSGN-RNEISKTSKKLFSKFYSFYTFE-------IFAKTVKKMRSSEIVKKFDN 207
Query: 253 RFIAVD----LR--------------------VDLLDNKGCHEGNGRKSCYGAHEIAVFL 288
+ I +D LR + LL NK G G EIA +
Sbjct: 208 KIIVIDEAHNLRLSDVKVNDEKIDVYGEVHRFIHLLTNKKVLLLTGTPMKDGPQEIASLM 267
Query: 289 RKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVID 348
I + LTQ + ++ + LK+ FP T + +E+FL S E + +
Sbjct: 268 NLI-------LPLTQ-QMPTNKNFLKEYFPSTEAPQETYELGDEEEFLKSGGEEMKNIKK 319
Query: 349 F----YLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIPADISGSSASATDFISPYVL 404
F Y C +F+ A+ + G+R+ S K+ ++P +S + A ++S Y+
Sbjct: 320 FKAQVYGCV---SFLKAMDSKVLKVMVGERMGSLKHYKVVPEYMSTFQSKA--YVSAYLQ 374
Query: 405 KK 406
K
Sbjct: 375 DK 376
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb
PE=2 SV=2
Length = 589
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 317 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 356
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRLDMAAAGFTEALTFALCSQED 422
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB
PE=2 SV=1
Length = 589
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 317 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 356
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQED 422
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB
PE=1 SV=3
Length = 589
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 317 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 356
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQED 422
>sp|P50412|VEGFA_SHEEP Vascular endothelial growth factor A OS=Ovis aries GN=VEGFA PE=2
SV=1
Length = 146
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 125 GSKPGDERKFEDVYDVNKFIRSLDGVVKVVKELPEEISF 163
G KP + KF DVY F R ++ +V + +E P+EI F
Sbjct: 33 GQKPHEVMKFMDVYQ-RSFCRPIETLVDIFQEYPDEIEF 70
>sp|P15691|VEGFA_BOVIN Vascular endothelial growth factor A OS=Bos taurus GN=VEGFA PE=1
SV=1
Length = 190
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 125 GSKPGDERKFEDVYDVNKFIRSLDGVVKVVKELPEEISF 163
G KP + KF DVY F R ++ +V + +E P+EI F
Sbjct: 33 GQKPHEVVKFMDVYQ-RSFCRPIETLVDIFQEYPDEIEF 70
>sp|Q2LZB1|UBP36_DROPS Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila
pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2
Length = 1059
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 372 GKRIASGKNQILIPADISGSSASATDFISPYV 403
G R+ +G +Q+ +PA +S SS + T FI P +
Sbjct: 490 GLRLTNGHSQVAVPATVSSSSPTHTRFIGPQL 521
>sp|P51862|ROM2_YEAST RHO1 GDP-GTP exchange protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROM2 PE=1 SV=1
Length = 1356
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 299 IYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFY 350
+Y+T+ + SL + +D F KT + NI+ AD ++ F+ F + D Y
Sbjct: 667 VYITEKNFVKSLEITRDTFMKTLAETNIISADIRKNFIKHV---FAHINDIY 715
>sp|Q8BWY9|CIP2A_MOUSE Protein CIP2A OS=Mus musculus GN=Kiaa1524 PE=2 SV=3
Length = 907
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 145 RSLDGVVKVVKELPEEISF----RNLAVVKVPNRVTEDHIIENIQPI--FKAKGNIRLAT 198
R+L G+++ V+ EE+S + L + N + +H+ ++ + + A+ I +
Sbjct: 675 RTLAGMLREVERKNEELSVLLKSQQLESERAQNDI--EHLFQHSKKLESVAAEHEILTKS 732
Query: 199 YFPSVNMRKSTEKSNADL-VACLAMFGTLELQPDVNEVVDSMVER-LRTLSRKSDGRFIA 256
Y V ++TEK N DL C ++ +E +NE + E+ + L K + R
Sbjct: 733 YMELVQRNEATEKKNTDLQTTCESLNKHIETMKKLNEALKQQNEKTIAQLIEKEEQR--- 789
Query: 257 VDLRVDLLDNKGCHEGNGRKSCYGAHEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDI 316
+++ L D + C N K E L+K DK TI + + + + K++
Sbjct: 790 KEVQSQLAD-RECKLSNLHKIAKSQEEKLNVLQKEKEDKQETIDILRKELSRTEQIRKEL 848
Query: 317 FPKTYTKE 324
K + E
Sbjct: 849 SIKASSLE 856
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,562,659
Number of Sequences: 539616
Number of extensions: 6414865
Number of successful extensions: 16779
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 16768
Number of HSP's gapped (non-prelim): 20
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)