Query 014966
Match_columns 415
No_of_seqs 176 out of 405
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 01:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 6.5E-48 1.4E-52 382.7 4.1 271 93-381 6-346 (351)
2 KOG3849 GDP-fucose protein O-f 98.3 1.3E-05 2.9E-10 79.1 13.7 261 82-380 25-370 (386)
3 PF05830 NodZ: Nodulation prot 97.9 0.00046 1E-08 69.4 15.4 251 86-369 2-290 (321)
4 PF01531 Glyco_transf_11: Glyc 92.0 6.1 0.00013 39.4 15.2 38 85-122 29-66 (298)
5 KOG3705 Glycoprotein 6-alpha-L 82.3 4.7 0.0001 42.7 7.5 128 225-365 340-475 (580)
6 PF03254 XG_FTase: Xyloglucan 60.1 2.4E+02 0.0051 30.8 14.2 280 84-385 109-444 (476)
7 PF02845 CUE: CUE domain; Int 56.9 9 0.0002 27.2 2.1 38 309-353 4-41 (42)
8 PF14771 DUF4476: Domain of un 52.4 10 0.00022 31.4 2.1 35 278-324 39-73 (95)
9 PF10892 DUF2688: Protein of u 42.0 19 0.00042 28.1 1.9 16 276-291 42-57 (60)
10 PF03801 Ndc80_HEC: HEC/Ndc80p 34.7 19 0.0004 33.1 1.0 43 282-352 95-137 (157)
11 PRK09240 thiH thiamine biosynt 32.6 3.2E+02 0.007 28.3 9.8 59 279-337 104-171 (371)
12 smart00546 CUE Domain that may 28.7 63 0.0014 22.8 2.8 37 308-351 4-40 (43)
13 TIGR02351 thiH thiazole biosyn 27.2 4.5E+02 0.0098 27.1 9.8 59 279-337 103-170 (366)
14 COG0859 RfaF ADP-heptose:LPS h 24.7 1.2E+02 0.0025 30.7 4.9 97 252-378 175-275 (334)
15 TIGR01354 cyt_deam_tetra cytid 24.5 88 0.0019 27.5 3.5 40 286-326 88-127 (127)
16 smart00874 B5 tRNA synthetase 24.3 63 0.0014 24.9 2.3 20 276-295 16-35 (71)
17 PRK05578 cytidine deaminase; V 24.2 82 0.0018 28.1 3.2 39 287-326 92-130 (131)
18 COG1060 ThiH Thiamine biosynth 24.1 1.9E+02 0.0042 30.3 6.4 97 279-382 90-216 (370)
19 cd03789 GT1_LPS_heptosyltransf 23.5 2.5E+02 0.0053 27.0 6.7 19 353-371 197-215 (279)
20 PRK10422 lipopolysaccharide co 22.5 5.8E+02 0.012 25.6 9.4 23 352-374 260-282 (352)
21 TIGR02195 heptsyl_trn_II lipop 22.2 2.5E+02 0.0054 27.8 6.6 111 251-387 173-284 (334)
22 PLN02757 sirohydrochlorine fer 21.5 92 0.002 28.5 3.1 60 208-279 90-153 (154)
23 TIGR02193 heptsyl_trn_I lipopo 21.2 4.1E+02 0.0089 26.0 7.9 93 251-372 178-272 (319)
24 PRK10556 hypothetical protein; 20.6 63 0.0014 28.0 1.7 20 279-298 3-22 (111)
25 COG4878 Uncharacterized protei 20.6 87 0.0019 31.9 2.9 55 282-336 91-148 (309)
26 TIGR03551 F420_cofH 7,8-dideme 20.1 4.8E+02 0.01 26.5 8.3 92 278-376 69-188 (343)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=6.5e-48 Score=382.65 Aligned_cols=271 Identities=24% Similarity=0.370 Sum_probs=187.4
Q ss_pred ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC-CCCCCCCC-----CCCcCChHHHHHhccCccEEeccCchhhhcccc
Q 014966 93 LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG-SKPGDERK-----FEDVYDVNKFIRSLDGVVKVVKELPEEISFRNL 166 (415)
Q Consensus 93 ~~GGlnq~R~~IcdaV~vArlLnATLViP~l~~-S~w~d~s~-----F~dIfD~dhFI~sL~~dV~Ivk~LP~~~~~~~~ 166 (415)
+.||+||||.++++||++|++||+|||||.+.. +.|++.++ |+++||+++|++.++++|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999996 78999887 999999999999999999999988876543210
Q ss_pred -------------------------------ceeeCCC-CCChHHHHhhchhhhhhc------ceEEEeecCCccccccC
Q 014966 167 -------------------------------AVVKVPN-RVTEDHIIENIQPIFKAK------GNIRLATYFPSVNMRKS 208 (415)
Q Consensus 167 -------------------------------~~~~~p~-~~s~~yy~~~ilP~l~~~------~vi~l~~f~~~~~~r~~ 208 (415)
....... +..+.+|.++++|.+.++ +++.|.++...+. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~ 163 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLP--DN 163 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS----
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccch--hc
Confidence 0011111 456677778899999886 9999987644332 34
Q ss_pred CCcchhhHHhhhhhcCceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeeeehhhccCCCCCC---------------
Q 014966 209 TEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDNKGCHEGN--------------- 273 (415)
Q Consensus 209 ~~p~~~q~LRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~emla~sgC~~~~--------------- 273 (415)
..+.++|+ +|+|+++|+++|++++++++. .+++|||+|||+|...++.|.++.
T Consensus 164 ~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~ 231 (351)
T PF10250_consen 164 YLDRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKS 231 (351)
T ss_dssp GGGGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGG
T ss_pred ccCccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCchHhhcccCCchHHHHHhHhhcccc
Confidence 45677776 999999999999999999992 358999999999833378888621
Q ss_pred -------CCccc-cCHHHHHHHHHHhCCCCCceEEEecccc---cccchHHHHhCCCCcccccCCChhhHHhhhcccccc
Q 014966 274 -------GRKSC-YGAHEIAVFLRKIGYDKDTTIYLTQSRW---DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSE 342 (415)
Q Consensus 274 -------~~g~C-LtP~Evgl~LralGf~~~T~IYlA~g~~---~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~ 342 (415)
..+.| ++|++++.+++++|+.+.|.||||++++ ...|++|++.||++++|+++.+.+|+++|.+ +
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~----~ 307 (351)
T PF10250_consen 232 INPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND----D 307 (351)
T ss_dssp TT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S---------S
T ss_pred ccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc----c
Confidence 13567 9999999999999999999999999995 5689999999999999999999999999974 3
Q ss_pred hhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCc
Q 014966 343 FEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQ 381 (415)
Q Consensus 343 ~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~~ 381 (415)
++|+||++||++||+||||..++|+.+|+++|++.|+++
T Consensus 308 ~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 308 QLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp --HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred chhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 479999999999999999999999999999999999874
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-05 Score=79.15 Aligned_cols=261 Identities=16% Similarity=0.232 Sum_probs=147.4
Q ss_pred ccCCCcEEEEE-ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC----CCCCCCCCCCCcCChHHHHHhccCccEEec-
Q 014966 82 IEESRGYVTFS-LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG----SKPGDERKFEDVYDVNKFIRSLDGVVKVVK- 155 (415)
Q Consensus 82 ~~~snGyl~v~-~~GGlnq~R~~IcdaV~vArlLnATLViP~l~~----S~w~d~s~F~dIfD~dhFI~sL~~dV~Ivk- 155 (415)
....||||+.- |-|-+.||-....-..|.|+.||.|||+|..-. .+.+---.|+..|.++-..+ .-||+.
T Consensus 25 ~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~----YhRVitm 100 (386)
T KOG3849|consen 25 SWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAK----YHRVITM 100 (386)
T ss_pred CCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhh----hhhheeH
Confidence 34689999876 889999999999999999999999999987642 12333445888888764332 223321
Q ss_pred -----cC-chhhh-------------ccccceeeC---------CCCCC-------hHHH----------------Hhhc
Q 014966 156 -----EL-PEEIS-------------FRNLAVVKV---------PNRVT-------EDHI----------------IENI 184 (415)
Q Consensus 156 -----~L-P~~~~-------------~~~~~~~~~---------p~~~s-------~~yy----------------~~~i 184 (415)
.| |.... .+.+..-.+ |-|-+ .+|| .+..
T Consensus 101 ~dFm~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kf 180 (386)
T KOG3849|consen 101 QDFMKKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKF 180 (386)
T ss_pred HHHHHHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhC
Confidence 11 11100 000000000 11110 0111 1111
Q ss_pred hhhhhhcceEEEeecCCccccccCCCcchhhHHhhhhhcCceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeeeeh-
Q 014966 185 QPIFKAKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDL- 263 (415)
Q Consensus 185 lP~l~~~~vi~l~~f~~~~~~r~~~~p~~~q~LRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~em- 263 (415)
.| ++|-|+.|++- | ......+..-.+|| -||.+.+|.|-|++.+..-- ..||+++|||.+.
T Consensus 181 p~--eeyPVLAf~gA-P-A~FPv~~e~~~lQk--------Yl~WS~r~~e~~k~fI~a~L------~rpfvgiHLRng~D 242 (386)
T KOG3849|consen 181 PS--EEYPVLAFSGA-P-APFPVKGEVWSLQK--------YLRWSSRITEQAKKFISANL------ARPFVGIHLRNGAD 242 (386)
T ss_pred Cc--ccCceeeecCC-C-CCCccccccccHHH--------HHHHHHHHHHHHHHHHHHhc------CcceeEEEeecCch
Confidence 11 46677777531 1 11111111223665 47889999999888764321 2499999999851
Q ss_pred hhccCCCC-----------------CC-C-----Cccc-cCHHHHHH-HHHHhCCC-CCceEEEecccccccchHHH-Hh
Q 014966 264 LDNKGCHE-----------------GN-G-----RKSC-YGAHEIAV-FLRKIGYD-KDTTIYLTQSRWDSSLSVLK-DI 316 (415)
Q Consensus 264 la~sgC~~-----------------~~-~-----~g~C-LtP~Evgl-~LralGf~-~~T~IYlA~g~~~~~l~~Lk-~~ 316 (415)
|. ..|.+ .+ . ...| =+.+||-. +-+..|-- .-..+|+|+..- +-+.+|. ++
T Consensus 243 Wv-raCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~-hmi~Eln~aL 320 (386)
T KOG3849|consen 243 WV-RACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSD-HMIDELNEAL 320 (386)
T ss_pred HH-HHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccch-hhhHHHHHhh
Confidence 22 22433 11 1 2367 55566532 33333332 334699998753 2234443 33
Q ss_pred CCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCC
Q 014966 317 FPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKN 380 (415)
Q Consensus 317 fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~ 380 (415)
+|--+.-..| +| . -+-+|..|.-+||.|||+--++|+..|--+|-..|++
T Consensus 321 ~~~~i~vh~l------~p-------d-d~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~GrP 370 (386)
T KOG3849|consen 321 KPYEIEVHRL------EP-------D-DMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGRP 370 (386)
T ss_pred cccceeEEec------Cc-------c-cchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCCc
Confidence 3332211111 11 1 2556889999999999999999999999999999843
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.87 E-value=0.00046 Score=69.42 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=126.6
Q ss_pred CcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCCCCCCCCcCChHHHHHhcc--CccEEeccCchhhhc
Q 014966 86 RGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGDERKFEDVYDVNKFIRSLD--GVVKVVKELPEEISF 163 (415)
Q Consensus 86 nGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLViP~l~~S~w~d~s~F~dIfD~dhFI~sL~--~dV~Ivk~LP~~~~~ 163 (415)
+.|+..+--+|++.--=+++-|-.+|+-.|.||||- -+.|-+-| ..|...|++ |-+-.+ ..|++.-+- .+..
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-w~~s~~~~-~~f~n~f~~--ffepv~~i~~~~~~~~d--~i~~ 75 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-WRGSCYLD-QPFTNAFPV--FFEPVEDIAGVRVICDD--RINQ 75 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--BT-TT-S-STTSBSHHH--HB---SEETTEEEE-SG--GGGT
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-cCCceecC-CcccccCCc--ccchhhhhcCceeEecc--hhhh
Confidence 578999999999999999999999999999999984 12222222 235554443 433333 344554221 1111
Q ss_pred cccceeeCCCCCC-h---------HHH---Hhhchhhhh------hcceEEEeecCCccccccCCCcchhhHHhhhhhcC
Q 014966 164 RNLAVVKVPNRVT-E---------DHI---IENIQPIFK------AKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFG 224 (415)
Q Consensus 164 ~~~~~~~~p~~~s-~---------~yy---~~~ilP~l~------~~~vi~l~~f~~~~~~r~~~~p~~~q~LRCr~~f~ 224 (415)
...+.--.|.||. | .++ .+++--+++ ..-||+.+-+.++-+ .++. | ..|.
T Consensus 76 ~~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c~-------~~ae--R--~if~ 144 (321)
T PF05830_consen 76 FSFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRCD-------EEAE--R--EIFS 144 (321)
T ss_dssp ----SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS--------HHHH--H--HHHH
T ss_pred hcCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcch-------hHHH--H--HHHH
Confidence 1000111345552 1 111 123333443 345787765555422 3333 3 4699
Q ss_pred ceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeee-e---hhhccCCCCCCCCccc-cCHHHHHH--------HHHHh
Q 014966 225 TLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-D---LLDNKGCHEGNGRKSC-YGAHEIAV--------FLRKI 291 (415)
Q Consensus 225 ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-e---mla~sgC~~~~~~g~C-LtP~Evgl--------~Lral 291 (415)
.|+-+++|++..+.+-+.-=. +.+-|++|.|. + ...+ .| .+-+|..+ -+++.
T Consensus 145 slkpR~eIqarID~iy~ehf~-----g~~~IGVHVRhGngeD~~~h----------~~~~~D~e~~L~~V~~ai~~ak~~ 209 (321)
T PF05830_consen 145 SLKPRPEIQARIDAIYREHFA-----GYSVIGVHVRHGNGEDIMDH----------APYWADEERALRQVCTAIDKAKAL 209 (321)
T ss_dssp HS-B-HHHHHHHHHHHHHHTT-----TSEEEEEEE-------------------------HHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCHHHHHHHHHHHHHHcC-----CCceEEEEEeccCCcchhcc----------CccccCchHHHHHHHHHHHHHHhc
Confidence 999999999998887655431 45689999995 1 1111 23 33343222 23556
Q ss_pred CCCCCceEEEecccccccchHHHHhCCCCcccccCCChhhHHhhhccc---ccchhhhhhhhhhhCCCeee-ecCCCchh
Q 014966 292 GYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSA---DSEFEKVIDFYLCSQSDAFV-PAISGLFY 367 (415)
Q Consensus 292 Gf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~---~s~~~AAlDy~Vc~~SDvFv-~t~~Gnf~ 367 (415)
-.++++.|+||+..-+ .++.+++.||.+++-++=.++..-.++.+.. .+...|.||-+..+++|+-| .+-.+.|+
T Consensus 210 ~~~k~~~IFLATDSae-Vid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fs 288 (321)
T PF05830_consen 210 APPKPVRIFLATDSAE-VIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFS 288 (321)
T ss_dssp --SS-EEEEEEES-HH-HHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGG
T ss_pred cCCCCeeEEEecCcHH-HHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhh
Confidence 6667899999997643 3688999999987664433322111222100 13447999999999999999 67778786
Q ss_pred HH
Q 014966 368 AN 369 (415)
Q Consensus 368 ~~ 369 (415)
..
T Consensus 289 r~ 290 (321)
T PF05830_consen 289 RY 290 (321)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=92.00 E-value=6.1 Score=39.42 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=32.8
Q ss_pred CCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeec
Q 014966 85 SRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPD 122 (415)
Q Consensus 85 snGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLViP~ 122 (415)
..+-..|.++|||.+|--+.+-.-++|+..+-+.++|.
T Consensus 29 ~~~~~~i~~~g~LGNqmfqya~l~~lak~~~~~~~i~~ 66 (298)
T PF01531_consen 29 KYLMSTINLNGRLGNQMFQYASLYGLAKLNGRTAFIPI 66 (298)
T ss_pred ccceEEEEEcchHHHHHhHHHHHHHHHHhcCCccccch
Confidence 57889999999999999999999999998887766654
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=4.7 Score=42.71 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=75.7
Q ss_pred ceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeee-ehhhcc-CCCCCCCCccccCH-HHHHHHHHHhCCCCCceEEE
Q 014966 225 TLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNK-GCHEGNGRKSCYGA-HEIAVFLRKIGYDKDTTIYL 301 (415)
Q Consensus 225 ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-emla~s-gC~~~~~~g~CLtP-~Evgl~LralGf~~~T~IYl 301 (415)
-+|++|-.++.-+ +-||..+- ..|-|++|.|. |-+.-. .|..- ..-++= |+-=.+|..=|=+-.-+|||
T Consensus 340 L~Rpqp~t~~~l~---~a~k~lg~--~~PivGvhvRRTDKVGTEAAfH~~---eEYM~~vE~~f~~le~rg~~~~rRifl 411 (580)
T KOG3705|consen 340 LMRPQPATQEKLD---KALKSLGL--DKPIVGVHVRRTDKVGTEAAFHAL---EEYMEWVEIWFKVLEKRGKPLERRIFL 411 (580)
T ss_pred HhCCChhhHHHHH---HHHHhCCC--CCceeeEEEEecccccchhhhhhH---HHHHHHHHHHHHHHHHhCCchhheEEE
Confidence 4788888776544 44554442 45999999987 643310 11100 000011 22234677778888889999
Q ss_pred ecccccccchHHHHhCCCCcccccCCChhhHHhhhcc----cccch-hhhhhhhhhhCCCeeeecCCCc
Q 014966 302 TQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDS----ADSEF-EKVIDFYLCSQSDAFVPAISGL 365 (415)
Q Consensus 302 A~g~~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~----~~s~~-~AAlDy~Vc~~SDvFv~t~~Gn 365 (415)
|+.+.. -+.+.|..|||.. +.+..|.+..... ...++ --.+|..+.+.+|+.|.|.++-
T Consensus 412 AsDDp~-vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 412 ASDDPT-VVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQ 475 (580)
T ss_pred ecCCch-hchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhheeeeeeeecccceEEEechHH
Confidence 999853 2466789999952 3333344433211 11122 2357999999999999987764
No 6
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=60.10 E-value=2.4e+02 Score=30.80 Aligned_cols=280 Identities=16% Similarity=0.171 Sum_probs=140.8
Q ss_pred CCCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeec---c--------CCCCCCCCCCCCCc-----CC---hHHHH
Q 014966 84 ESRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPD---I--------RGSKPGDERKFEDV-----YD---VNKFI 144 (415)
Q Consensus 84 ~snGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLViP~---l--------~~S~w~d~s~F~dI-----fD---~dhFI 144 (415)
..-.||.-....||.|.-.+|+-|..+|-|-|..|+|.. + -.|.|--|.+|--- |+ .+-+-
T Consensus 109 ~~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~syg 188 (476)
T PF03254_consen 109 SECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAESYG 188 (476)
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchHHHH
Confidence 456799999999999999999999999999999988844 1 12448666665221 12 22344
Q ss_pred HhccCccEEec--cCchhhhccccceeeCCCC---CChHHHHhhchhhhhhcceEEEee---cCCccccccCCCc---ch
Q 014966 145 RSLDGVVKVVK--ELPEEISFRNLAVVKVPNR---VTEDHIIENIQPIFKAKGNIRLAT---YFPSVNMRKSTEK---SN 213 (415)
Q Consensus 145 ~sL~~dV~Ivk--~LP~~~~~~~~~~~~~p~~---~s~~yy~~~ilP~l~~~~vi~l~~---f~~~~~~r~~~~p---~~ 213 (415)
+-|++.+.... .+|+-+ .+.+... -..-|+-++-...|++-.-+.+.. |.|++=+ .| .+
T Consensus 189 nml~~~~~~~~~~~~p~~v------yl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl----~P~f~~e 258 (476)
T PF03254_consen 189 NMLKNKSINNSDNSLPPYV------YLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFL----VPSFRPE 258 (476)
T ss_pred HHHhcCCccccccCCCcee------EEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhh----chHHHHH
Confidence 44555444433 333321 1111111 112233333333333333333220 1111100 12 12
Q ss_pred hhHHhh-h-hhcC-ceee----chhHHHHHHHHHHHHhhcccCCCCceEEEEeee-e---------hhhccCCCCCCCCc
Q 014966 214 ADLVAC-L-AMFG-TLEL----QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-D---------LLDNKGCHEGNGRK 276 (415)
Q Consensus 214 ~q~LRC-r-~~f~-ALrF----~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-e---------mla~sgC~~~~~~g 276 (415)
+.+|-= + ..|| -.|+ +.++- .+|.|.-..--+..+.=|++-.|. + |-+--.|.... +
T Consensus 259 L~~lFP~k~tvFhhL~RYLfhPsN~VW----~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e--~ 332 (476)
T PF03254_consen 259 LDRLFPEKDTVFHHLGRYLFHPSNQVW----GLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQE--K 332 (476)
T ss_pred HHHhcCChhHHHHHHHHHHcCCCchhH----HHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhc--c
Confidence 222100 0 0111 1111 11222 234443221111234558888887 2 11111254221 2
Q ss_pred cc--c-CHHHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCCc--ccccC----CChhhHHhhhcccccchhhhh
Q 014966 277 SC--Y-GAHEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTY--TKENI----MPADKKEKFLDSADSEFEKVI 347 (415)
Q Consensus 277 ~C--L-tP~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~--tKe~L----~~~eeL~~f~~~~~s~~~AAl 347 (415)
.. . +..|. .--.+.+=.+.+.|+||+=..+ .=+.||++|-.-- |-|.+ .+.||.+.+.+...+ ++|..
T Consensus 333 LLP~v~~~~~~-~~~~~~~~~~~kaVlVtSL~~~-yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~-~kAla 409 (476)
T PF03254_consen 333 LLPEVVDTQEP-AASSSSKSQKSKAVLVTSLYSE-YYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHN-QKALA 409 (476)
T ss_pred cCCCccccccc-cccccCCCCceEEEEEEeCCHH-HHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchH-HHHHH
Confidence 11 2 11121 1112333446667888876532 1255777776532 22222 456777777654334 47999
Q ss_pred hhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCceecC
Q 014966 348 DFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIP 385 (415)
Q Consensus 348 Dy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~~ti~P 385 (415)
|-+..+-||+-|.|.-++|...-+|- .|.+..|-.
T Consensus 410 EmyLLS~sD~LVTS~~STFGYVAqgL---gGl~PwiL~ 444 (476)
T PF03254_consen 410 EMYLLSLSDVLVTSGWSTFGYVAQGL---GGLRPWILY 444 (476)
T ss_pred HHHHHHhccceEecCCCCchhHHHhh---cCCCceEEe
Confidence 99999999999999999998766653 365554433
No 7
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=56.86 E-value=9 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=25.7
Q ss_pred cchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhh
Q 014966 309 SLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCS 353 (415)
Q Consensus 309 ~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~ 353 (415)
.+..|+++||++ +.+.+..-.....+.+.+|+|.+.+.
T Consensus 4 ~v~~L~~mFP~~-------~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDL-------DREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS--------HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 367899999995 44455544433356788999988753
No 8
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=52.39 E-value=10 Score=31.39 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCCcccc
Q 014966 278 CYGAHEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKE 324 (415)
Q Consensus 278 CLtP~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe 324 (415)
|+|..+++-+|+...|+ ..+|+.|+-++|++++++
T Consensus 39 ~~T~~Qv~~il~~f~fd------------~~kl~~lk~l~p~i~D~~ 73 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD------------NDKLKALKLLYPYIVDPQ 73 (95)
T ss_pred ceeHHHHHHHHHHcCCC------------HHHHHHHHHHhhhccCHH
Confidence 89999999999999998 567999999999999986
No 9
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=42.00 E-value=19 Score=28.08 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.8
Q ss_pred ccccCHHHHHHHHHHh
Q 014966 276 KSCYGAHEIAVFLRKI 291 (415)
Q Consensus 276 g~CLtP~Evgl~Lral 291 (415)
|-|+||||-+.+++++
T Consensus 42 ~~CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDCITPEEDREILEAT 57 (60)
T ss_pred hccCCHHHHHHHHHHH
Confidence 5689999999998875
No 10
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=34.67 E-value=19 Score=33.09 Aligned_cols=43 Identities=16% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhh
Q 014966 282 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 352 (415)
Q Consensus 282 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 352 (415)
+|+-.+||.|||| |- .++|..|.+.. ..|.|..+++||+++|=
T Consensus 95 eev~~~lK~L~YP----------------------~~-~isKS~L~a~g-----s~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 95 EEVPFLLKALGYP----------------------FA-TISKSSLQAPG-----SPHSWPHLLGALHWLVE 137 (157)
T ss_dssp HHHHHHHHHTT-S----------------------S-----HHHHHSTT-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC----------------------cc-ccCHHHccCCC-----CcccHHHHHHHHHHHHH
Confidence 6788899999988 22 35677666644 22346777899988873
No 11
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.59 E-value=3.2e+02 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHhCCCCCceEEEecccc---------cccchHHHHhCCCCcccccCCChhhHHhhhc
Q 014966 279 YGAHEIAVFLRKIGYDKDTTIYLTQSRW---------DSSLSVLKDIFPKTYTKENIMPADKKEKFLD 337 (415)
Q Consensus 279 LtP~Evgl~LralGf~~~T~IYlA~g~~---------~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~ 337 (415)
|+++|+....+++.=..-+.|.|.+|+- .+.+..+++.||.+--+--.++.+++..+++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~ 171 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVE 171 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHH
Confidence 9999986544433222356888888873 1234566778887644444567777776663
No 12
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=28.75 E-value=63 Score=22.81 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=23.0
Q ss_pred ccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhh
Q 014966 308 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYL 351 (415)
Q Consensus 308 ~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~V 351 (415)
..++.|+++||++ +.+....-.....+.+.+|||-+.
T Consensus 4 ~~v~~L~~mFP~l-------~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 4 EALHDLKDMFPNL-------DEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467899999996 233333333323467788888654
No 13
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=27.21 E-value=4.5e+02 Score=27.08 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHhCCCCCceEEEecccc---------cccchHHHHhCCCCcccccCCChhhHHhhhc
Q 014966 279 YGAHEIAVFLRKIGYDKDTTIYLTQSRW---------DSSLSVLKDIFPKTYTKENIMPADKKEKFLD 337 (415)
Q Consensus 279 LtP~Evgl~LralGf~~~T~IYlA~g~~---------~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~ 337 (415)
|+++|+....+++-=..-+.|.|.+|+. .+.+..+++.||.+--.-..++.++++.+++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~ 170 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVE 170 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHH
Confidence 8999986544332222367888888874 1224567788886644444577888877764
No 14
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.72 E-value=1.2e+02 Score=30.68 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=63.5
Q ss_pred CceEEEEeeeehhhccCCCCCCCCccccCH---HHHHHHHHHhCCCCCceEEEecccc-cccchHHHHhCCCCcccccCC
Q 014966 252 GRFIAVDLRVDLLDNKGCHEGNGRKSCYGA---HEIAVFLRKIGYDKDTTIYLTQSRW-DSSLSVLKDIFPKTYTKENIM 327 (415)
Q Consensus 252 gpyiAlHLR~emla~sgC~~~~~~g~CLtP---~Evgl~LralGf~~~T~IYlA~g~~-~~~l~~Lk~~fPn~~tKe~L~ 327 (415)
+|||++|.=. ..+..++.+. .|++..|.+-| .+|.|.+|.- ++..+.+.+..++.+. |.
T Consensus 175 ~~~i~i~pg~----------s~~~~K~wp~e~~~~l~~~l~~~~----~~Vvl~g~~~e~e~~~~i~~~~~~~~~---l~ 237 (334)
T COG0859 175 RPYIVINPGA----------SRGSAKRWPLEHYAELAELLIAKG----YQVVLFGGPDEEERAEEIAKGLPNAVI---LA 237 (334)
T ss_pred CCeEEEeccc----------cccccCCCCHHHHHHHHHHHHHCC----CEEEEecChHHHHHHHHHHHhcCCccc---cC
Confidence 4899988620 1123344444 45667777776 7899999884 3446788888888655 55
Q ss_pred ChhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcC
Q 014966 328 PADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASG 378 (415)
Q Consensus 328 ~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G 378 (415)
+...|..+. +.| ..||.||++.+|-+.-+-+.++-..|
T Consensus 238 ~k~sL~e~~--------~li-----~~a~l~I~~DSg~~HlAaA~~~P~I~ 275 (334)
T COG0859 238 GKTSLEELA--------ALI-----AGADLVIGNDSGPMHLAAALGTPTIA 275 (334)
T ss_pred CCCCHHHHH--------HHH-----hcCCEEEccCChHHHHHHHcCCCEEE
Confidence 555444332 222 57999999999998866666664444
No 15
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=24.45 E-value=88 Score=27.51 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccC
Q 014966 286 VFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 326 (415)
Q Consensus 286 l~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L 326 (415)
.+|..++ +.++.|++...+.......|+++.|.-+.+++|
T Consensus 88 q~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 88 QVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 3677776 568899999887765567888889987776653
No 16
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=24.33 E-value=63 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.4
Q ss_pred ccccCHHHHHHHHHHhCCCC
Q 014966 276 KSCYGAHEIAVFLRKIGYDK 295 (415)
Q Consensus 276 g~CLtP~Evgl~LralGf~~ 295 (415)
|..++++|+..+|+.|||.-
T Consensus 16 G~~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEV 35 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeE
Confidence 44589999999999999974
No 17
>PRK05578 cytidine deaminase; Validated
Probab=24.16 E-value=82 Score=28.12 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=28.7
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccC
Q 014966 287 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 326 (415)
Q Consensus 287 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L 326 (415)
+|..+. +.++.||+...+.......|+++.|.=+++++|
T Consensus 92 ~l~e~~-~~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l 130 (131)
T PRK05578 92 VLAEFG-GPDLLVTLVAKDGPTGEMTLGELLPYAFTPDDL 130 (131)
T ss_pred HHHHhC-CCCcEEEEEcCCCCEEEEEHHHhCcCcCChhhc
Confidence 455553 568899998877655557888888988887765
No 18
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=24.06 E-value=1.9e+02 Score=30.26 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=63.6
Q ss_pred cCHHHHHHHHHHhCCCCCceEEEecccc--------cccchHHHHhCCCCc------------ccccCCChhh-HHhhhc
Q 014966 279 YGAHEIAVFLRKIGYDKDTTIYLTQSRW--------DSSLSVLKDIFPKTY------------TKENIMPADK-KEKFLD 337 (415)
Q Consensus 279 LtP~Evgl~LralGf~~~T~IYlA~g~~--------~~~l~~Lk~~fPn~~------------tKe~L~~~ee-L~~f~~ 337 (415)
|||+||....++.-=..-|.|=+.+|+- +.-+...|+.||++. ++..-++.+| ++.++
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk- 168 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLK- 168 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHH-
Confidence 9999997655555444567899999973 234567788888863 3344455444 77665
Q ss_pred ccccchhhhhhhhhhhCCCeeeec----CC---CchhHHHHHHHhh--cCCCce
Q 014966 338 SADSEFEKVIDFYLCSQSDAFVPA----IS---GLFYANVAGKRIA--SGKNQI 382 (415)
Q Consensus 338 ~~~s~~~AAlDy~Vc~~SDvFv~t----~~---Gnf~~~V~g~R~~--~G~~~t 382 (415)
.|.+|.+---.|.++.-+ +. -++...+.-|++. .|.+.|
T Consensus 169 ------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 169 ------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred ------HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 377898888888888855 22 2456666666655 354433
No 19
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.52 E-value=2.5e+02 Score=27.04 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.2
Q ss_pred hCCCeeeecCCCchhHHHH
Q 014966 353 SQSDAFVPAISGLFYANVA 371 (415)
Q Consensus 353 ~~SDvFv~t~~Gnf~~~V~ 371 (415)
.+||.||++..|.+.-+.+
T Consensus 197 ~~~~l~I~~Dsg~~HlA~a 215 (279)
T cd03789 197 ARADLVVTNDSGPMHLAAA 215 (279)
T ss_pred HhCCEEEeeCCHHHHHHHH
Confidence 4699999999999876544
No 20
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.52 E-value=5.8e+02 Score=25.60 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=17.8
Q ss_pred hhCCCeeeecCCCchhHHHHHHH
Q 014966 352 CSQSDAFVPAISGLFYANVAGKR 374 (415)
Q Consensus 352 c~~SDvFv~t~~Gnf~~~V~g~R 374 (415)
..+||.||++.+|.|.-+.+-..
T Consensus 260 i~~a~l~v~nDSGp~HlAaA~g~ 282 (352)
T PRK10422 260 IDHAQLFIGVDSAPAHIAAAVNT 282 (352)
T ss_pred HHhCCEEEecCCHHHHHHHHcCC
Confidence 34699999999999986665433
No 21
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.23 E-value=2.5e+02 Score=27.80 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred CCceEEEEeeeehhhccCCCCCCCCccccCHHHHHHHHHHhCCCCCceEEEecccccc-cchHHHHhCCCCcccccCCCh
Q 014966 251 DGRFIAVDLRVDLLDNKGCHEGNGRKSCYGAHEIAVFLRKIGYDKDTTIYLTQSRWDS-SLSVLKDIFPKTYTKENIMPA 329 (415)
Q Consensus 251 ~gpyiAlHLR~emla~sgC~~~~~~g~CLtP~Evgl~LralGf~~~T~IYlA~g~~~~-~l~~Lk~~fPn~~tKe~L~~~ 329 (415)
++|||++|.=- . .+..++..++--..+.+.+. ...-.|.|.+|..++ ..+.+.+..++.. -+|...
T Consensus 173 ~~~~i~i~pga--------~--~~~~K~Wp~e~~~~li~~l~-~~~~~ivl~G~~~e~~~~~~i~~~~~~~~--~~l~g~ 239 (334)
T TIGR02195 173 ERPIIAFCPGA--------E--FGPAKRWPHEHYAELAKRLI-DQGYQVVLFGSAKDHPAGNEIEALLPGEL--RNLAGE 239 (334)
T ss_pred CCCEEEEcCCC--------C--CCccCCCCHHHHHHHHHHHH-HCCCEEEEEEChhhHHHHHHHHHhCCccc--ccCCCC
Confidence 46999999610 0 01244555554444444442 123468888776543 3455665555321 123332
Q ss_pred hhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCceecCCC
Q 014966 330 DKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIPAD 387 (415)
Q Consensus 330 eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~~ti~P~r 387 (415)
..|..+ .|. ..+||.||++.+|.|.-+.+-..-..+.--...|.+
T Consensus 240 ~sL~el--------~al-----i~~a~l~I~~DSGp~HlAaA~~~P~i~lfG~t~p~~ 284 (334)
T TIGR02195 240 TSLDEA--------VDL-----IALAKAVVTNDSGLMHVAAALNRPLVALYGSTSPDF 284 (334)
T ss_pred CCHHHH--------HHH-----HHhCCEEEeeCCHHHHHHHHcCCCEEEEECCCChhh
Confidence 222222 222 347999999999999876664443333222334554
No 22
>PLN02757 sirohydrochlorine ferrochelatase
Probab=21.51 E-value=92 Score=28.47 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCCcchhhHHhhhhhcCceeechhHH---HHHHHHHHHHhhcccCCCCceEEEEeeeehhhccCCCCCCCCccc-c
Q 014966 208 STEKSNADLVACLAMFGTLELQPDVN---EVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDNKGCHEGNGRKSC-Y 279 (415)
Q Consensus 208 ~~~p~~~q~LRCr~~f~ALrF~p~I~---~lg~~lv~Rlr~~s~~~~gpyiAlHLR~emla~sgC~~~~~~g~C-L 279 (415)
+.+|..++.++++..-..+.+.++|- .|++.|.+|+++......+ .+| + |..-.++|+| |
T Consensus 90 ~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~~~--------~~~---~-~~~~~~~~~~~~ 153 (154)
T PLN02757 90 EDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHVAG--------DAD---E-CDVCAGTGKCRL 153 (154)
T ss_pred hHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcccC--------CCC---c-cceeeccccccc
Confidence 44677788887775555677777776 7888999999986432211 011 1 5555578999 6
No 23
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.24 E-value=4.1e+02 Score=26.00 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCceEEEEeeeehhhccCCCCCCCCccccCHHHHHHHHHHhCCCCCceEEEe-ccccc-ccchHHHHhCCCCcccccCCC
Q 014966 251 DGRFIAVDLRVDLLDNKGCHEGNGRKSCYGAHEIAVFLRKIGYDKDTTIYLT-QSRWD-SSLSVLKDIFPKTYTKENIMP 328 (415)
Q Consensus 251 ~gpyiAlHLR~emla~sgC~~~~~~g~CLtP~Evgl~LralGf~~~T~IYlA-~g~~~-~~l~~Lk~~fPn~~tKe~L~~ 328 (415)
++|||++|.- . ....++..++.-+.+.+.+- ++.-.|.|. +|+-+ ...+.+.+..|+. ++..
T Consensus 178 ~~~~i~i~~g--------a---s~~~K~wp~e~~~~l~~~l~-~~~~~~vl~~g~~~e~~~~~~i~~~~~~~----~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHA--------T---SRDDKTWPEERWRELARLLL-ARGLQIVLPWGNDAEKQRAERIAEALPGA----VVLP 241 (319)
T ss_pred CCCEEEEEeC--------C---CcccCCCCHHHHHHHHHHHH-HCCCeEEEeCCCHHHHHHHHHHHhhCCCC----eecC
Confidence 4689999862 1 12356677776666666553 223456565 44433 3345666666653 3443
Q ss_pred hhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHH
Q 014966 329 ADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAG 372 (415)
Q Consensus 329 ~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g 372 (415)
...|..+ .| +..+||.||++.+|.|.-+.+-
T Consensus 242 ~~sL~el--------~a-----li~~a~l~I~~DSgp~HlAaa~ 272 (319)
T TIGR02193 242 KMSLAEV--------AA-----LLAGADAVVGVDTGLTHLAAAL 272 (319)
T ss_pred CCCHHHH--------HH-----HHHcCCEEEeCCChHHHHHHHc
Confidence 3222222 12 3457999999999999866553
No 24
>PRK10556 hypothetical protein; Provisional
Probab=20.64 E-value=63 Score=28.04 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.3
Q ss_pred cCHHHHHHHHHHhCCCCCce
Q 014966 279 YGAHEIAVFLRKIGYDKDTT 298 (415)
Q Consensus 279 LtP~Evgl~LralGf~~~T~ 298 (415)
|-|.||+.+|+..||..+..
T Consensus 3 LRPDEVArVLe~aGF~~D~v 22 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVV 22 (111)
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999986653
No 25
>COG4878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=87 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCC-CCceEEEecccc--cccchHHHHhCCCCcccccCCChhhHHhhh
Q 014966 282 HEIAVFLRKIGYD-KDTTIYLTQSRW--DSSLSVLKDIFPKTYTKENIMPADKKEKFL 336 (415)
Q Consensus 282 ~Evgl~LralGf~-~~T~IYlA~g~~--~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~ 336 (415)
+++..++..|--. =+|.||++.+++ ++....|.+.+|++-|-.++.+.+|..+|.
T Consensus 91 ~~L~~y~~~ls~~~y~~~vfVppSnil~q~gk~alvk~~p~lktissiy~~deykd~~ 148 (309)
T COG4878 91 YTLADYGDILSITGYDTFVFVPPSNILLQKGKFALVKQAPSLKTISSIYNTDEYKDFN 148 (309)
T ss_pred HHHHHHHHHHhccccceEEEeCcccccchhHHHHHHHhCCCcceeeeEecccccCccc
Confidence 4456677777555 578999999997 778999999999999999999999988885
No 26
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.09 E-value=4.8e+02 Score=26.45 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEecccc--------cccchHHHHhCCCCcc-------------cccCCChhhHHhhh
Q 014966 278 CYGAHEIAVFLRKIGYDKDTTIYLTQSRW--------DSSLSVLKDIFPKTYT-------------KENIMPADKKEKFL 336 (415)
Q Consensus 278 CLtP~Evgl~LralGf~~~T~IYlA~g~~--------~~~l~~Lk~~fPn~~t-------------Ke~L~~~eeL~~f~ 336 (415)
.++++||....+.+-=..-+.|.+++|+. ..-+..+++.+|.+.- ...+.+.|+++.++
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 39999985433332222355899998842 1335677888887631 22345677788887
Q ss_pred cccccchhhhhhhhhhhCCCeeee-----cCCC--chhHHHHHHHhh
Q 014966 337 DSADSEFEKVIDFYLCSQSDAFVP-----AISG--LFYANVAGKRIA 376 (415)
Q Consensus 337 ~~~~s~~~AAlDy~Vc~~SDvFv~-----t~~G--nf~~~V~g~R~~ 376 (415)
+ |.+|-+-....++|-. -..+ ++...+...|..
T Consensus 149 e-------AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a 188 (343)
T TIGR03551 149 E-------AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTA 188 (343)
T ss_pred H-------hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 3 5566544333344421 1122 454555555554
Done!