Query 014966
Match_columns 415
No_of_seqs 176 out of 405
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.8 1.7E-19 5.9E-24 183.2 17.1 285 82-393 18-395 (408)
2 3zy2_A Putative GDP-fucose pro 99.6 1.1E-14 3.6E-19 145.8 15.0 256 84-380 6-350 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 98.2 0.00014 4.7E-09 76.8 22.8 258 85-388 144-434 (526)
4 2hhc_A NODZ, nodulation fucosy 98.2 3.1E-05 1.1E-09 75.8 15.7 260 85-371 3-294 (330)
5 1wgl_A TOLL-interacting protei 69.6 4.3 0.00015 30.5 3.7 49 307-362 10-58 (59)
6 2igp_A Retinoblastoma-associat 51.0 5.6 0.00019 33.8 1.5 42 282-352 73-114 (120)
7 2ve7_A Kinetochore protein HEC 37.1 11 0.00039 36.7 1.5 41 282-351 71-111 (315)
8 2dhy_A CUE domain-containing p 31.3 19 0.00065 27.7 1.6 42 307-355 19-60 (67)
9 1p3q_Q VPS9P, vacuolar protein 26.0 28 0.00096 25.8 1.6 38 308-352 14-51 (54)
10 3l32_A Phosphoprotein; antipar 24.3 28 0.00096 24.8 1.3 20 226-245 3-22 (45)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.82 E-value=1.7e-19 Score=183.16 Aligned_cols=285 Identities=13% Similarity=0.139 Sum_probs=177.3
Q ss_pred ccCCCcEEEEEe-cC-CchhhHHHHHhHHHHHHHhcce----EEeeccCC-CCCCC------CCCCCCcCChHHHHHhcc
Q 014966 82 IEESRGYVTFSL-TN-GPEYHVSQIADAVVVARVLRAT----LVVPDIRG-SKPGD------ERKFEDVYDVNKFIRSLD 148 (415)
Q Consensus 82 ~~~snGyl~v~~-~G-Glnq~R~~IcdaV~vArlLnAT----LViP~l~~-S~w~d------~s~F~dIfD~dhFI~sL~ 148 (415)
....++||+-.. .| |+|+||...-.|.++|+.||.| ||||-... -.|.. .-.|++.||++++-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 345789999886 45 7999999999999999999999 99996643 33422 22599999998753
Q ss_pred CccEEeccCchhhhcc-ccce-------------------------eeC---C------CC--CChHHH-----------
Q 014966 149 GVVKVVKELPEEISFR-NLAV-------------------------VKV---P------NR--VTEDHI----------- 180 (415)
Q Consensus 149 ~dV~Ivk~LP~~~~~~-~~~~-------------------------~~~---p------~~--~s~~yy----------- 180 (415)
..|+|+.- +++... .+.. ... + .. ..+-|-
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566522 121110 0000 000 0 00 000000
Q ss_pred ------HhhchhhhhhcceEEEeecCCccccccCCCc--chhhHHhhhhhcCceeechhHHHHHHHHHHHHhhc------
Q 014966 181 ------IENIQPIFKAKGNIRLATYFPSVNMRKSTEK--SNADLVACLAMFGTLELQPDVNEVVDSMVERLRTL------ 246 (415)
Q Consensus 181 ------~~~ilP~l~~~~vi~l~~f~~~~~~r~~~~p--~~~q~LRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~------ 246 (415)
...+.|.+.+..-++-.+....-. .....+ .+...+| ..|+|+++|.+.|++.++..-..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~-~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~~~h 245 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAEN-LLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDDADR 245 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGG-SBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTTTTT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhccc-CCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccceee
Confidence 001112222211111000000000 000011 2222222 47999999999999988765221
Q ss_pred --------------ccCCCCceEEEEeeee--hhhccCCCCCCCCccc-cCHHHHHH-HHHHhCCCCCceEEEecccccc
Q 014966 247 --------------SRKSDGRFIAVDLRVD--LLDNKGCHEGNGRKSC-YGAHEIAV-FLRKIGYDKDTTIYLTQSRWDS 308 (415)
Q Consensus 247 --------------s~~~~gpyiAlHLR~e--mla~sgC~~~~~~g~C-LtP~Evgl-~LralGf~~~T~IYlA~g~~~~ 308 (415)
....+|+|+|+|+|.. +..+ ..| .+-++++. +.+.|.=.+.+.||||+.+.+.
T Consensus 246 ~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~---------~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~~~ 316 (408)
T 4ap5_A 246 IPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGH---------RQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRK 316 (408)
T ss_dssp CCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTT---------CSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCCHH
T ss_pred cccchhHhhhhcccccccCCCccccccccccchhhh---------hccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCchh
Confidence 1123579999999983 3332 345 55555543 3333333356689999988777
Q ss_pred cchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCceecCCCC
Q 014966 309 SLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIPADI 388 (415)
Q Consensus 309 ~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~~ti~P~r~ 388 (415)
.+..|++.+|.++.-. ...+++..+.+ ++ .|.||++||.+||+||||..++|+..|.-+|.+.|++...+.|++
T Consensus 317 ~~~~l~~~~~~~~~~~--~~~~~~~~~~d---~~-~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~~~~ 390 (408)
T 4ap5_A 317 EYEELKKLLPEMVRFE--PTWEELELYKD---GG-VAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRF 390 (408)
T ss_dssp HHHHHHHHCTTEECCC--CCHHHHHHHHH---HH-HHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTSCBC
T ss_pred HHHHHHHhCCCcEEec--CcchhhhccCc---ch-hhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcccccc
Confidence 7889999999876433 34566777753 44 599999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014966 389 SGSSA 393 (415)
Q Consensus 389 ~~~~~ 393 (415)
-++..
T Consensus 391 c~~~~ 395 (408)
T 4ap5_A 391 CGDQE 395 (408)
T ss_dssp CCTTC
T ss_pred CCCCc
Confidence 87654
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.59 E-value=1.1e-14 Score=145.78 Aligned_cols=256 Identities=17% Similarity=0.265 Sum_probs=160.2
Q ss_pred CCCcEEEEE-ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC-CCCCCC--CCCCCcCChHHHHHhccCccEEe--cc-
Q 014966 84 ESRGYVTFS-LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG-SKPGDE--RKFEDVYDVNKFIRSLDGVVKVV--KE- 156 (415)
Q Consensus 84 ~snGyl~v~-~~GGlnq~R~~IcdaV~vArlLnATLViP~l~~-S~w~d~--s~F~dIfD~dhFI~sL~~dV~Iv--k~- 156 (415)
.+||||+-= |-|-+.||-....-+.+.|+.||.|||||-+-. .. +++ -.|++-|+++. |+..-||+ ++
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~me~F 80 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTMQEF 80 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeHHHH
Confidence 479999885 999999999999999999999999999987753 22 221 23888888876 33344554 11
Q ss_pred ---C-----chhhh-----------------------ccccc-------eeeC-------C--C-------CCChHHHHh
Q 014966 157 ---L-----PEEIS-----------------------FRNLA-------VVKV-------P--N-------RVTEDHIIE 182 (415)
Q Consensus 157 ---L-----P~~~~-----------------------~~~~~-------~~~~-------p--~-------~~s~~yy~~ 182 (415)
| |++-. +.+|+ .++. | . ....+|. +
T Consensus 81 m~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~-~ 159 (362)
T 3zy2_A 81 TKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL-E 159 (362)
T ss_dssp HHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH-H
T ss_pred HHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH-H
Confidence 2 21110 00110 0000 0 0 0011121 2
Q ss_pred hchhhhhhcceEEEeecCCccccccCCCcchhhHHhhhhhcCceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeeee
Q 014966 183 NIQPIFKAKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVD 262 (415)
Q Consensus 183 ~ilP~l~~~~vi~l~~f~~~~~~r~~~~p~~~q~LRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~e 262 (415)
...| .+|-|+.|.+- | .+.......-.+|| -|+++++|.+.|++.++.-- ++||||+|||.-
T Consensus 160 ~~p~--~~~pVlAf~ga-P-a~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L------~rpyVgIHLR~G 221 (362)
T 3zy2_A 160 KFPS--EEYPVLAFSSA-P-APFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL------AKPFVAVHLRND 221 (362)
T ss_dssp HSCT--TTCSEEEESSC-S-SCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC------CSSEEEEEECCC
T ss_pred hCCc--ccCceEeecCC-C-CCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc------CCCeEEEEEecC
Confidence 2222 46788888631 1 12111111233443 79999999999999888743 249999999993
Q ss_pred --------hhhc---------cCCCCCCC------Cccc-cCHHHHHH----HHHHhCCCCCceEEEecccccccchHHH
Q 014966 263 --------LLDN---------KGCHEGNG------RKSC-YGAHEIAV----FLRKIGYDKDTTIYLTQSRWDSSLSVLK 314 (415)
Q Consensus 263 --------mla~---------sgC~~~~~------~g~C-LtP~Evgl----~LralGf~~~T~IYlA~g~~~~~l~~Lk 314 (415)
+++- ..|.+... ...| =+.+++.. +++.+ +-..||||+..-+ .++.|+
T Consensus 222 ~DW~~aC~hlk~~~~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~---~lksVFIATDa~~-~~~ELk 297 (362)
T 3zy2_A 222 ADWVRVCEHIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSI---GAKSVFVASDKDH-MIDEIN 297 (362)
T ss_dssp HHHHHHHHTCCTTTCCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHH---TCSEEEEEESSCC-CHHHHH
T ss_pred CcHHHHHhhhccccCcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhc---CCcEEEEecCCHH-HHHHHH
Confidence 2221 12432111 1368 56666543 44444 5679999997544 688999
Q ss_pred HhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCC
Q 014966 315 DIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKN 380 (415)
Q Consensus 315 ~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R~~~G~~ 380 (415)
+.|+..-.+ +. .+. -. .|+||.+||.+||+||||..++|+.+|.-+|...|+.
T Consensus 298 ~~L~~~~v~--vv------~~~----pe-~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G~~ 350 (362)
T 3zy2_A 298 EALKPYEIE--AH------RQE----PD-DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQS 350 (362)
T ss_dssp HHHGGGTCC--EE------CCS----SC-CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSSSS
T ss_pred HHhhccCce--EE------EeC----Cc-hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcCCC
Confidence 988752101 00 111 11 4999999999999999999999999999999999943
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=98.24 E-value=0.00014 Score=76.76 Aligned_cols=258 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCcEEEEEe--cCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCC-CCCCCCcCChHHHHHhccCccEEeccCchhh
Q 014966 85 SRGYVTFSL--TNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGD-ERKFEDVYDVNKFIRSLDGVVKVVKELPEEI 161 (415)
Q Consensus 85 snGyl~v~~--~GGlnq~R~~IcdaV~vArlLnATLViP~l~~S~w~d-~s~F~dIfD~dhFI~sL~~dV~Ivk~LP~~~ 161 (415)
+..||+... ..|+..+-..++-|..+|-.+|.|||+-.- -|.- ...|.++|.. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~---~w~Y~~g~w~~yF~P--~s~~C~~~-------~~-- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQ---NWRYATGGWETVFRP--VSETCTDR-------SG-- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECT---TCSSCTTCGGGTBCC--SCSSCCCC-------CC--
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECC---CCCcCCCCHHHhhhC--cCccccCC-------Cc--
Confidence 347898876 479988888899999999999999999432 2432 2467777775 22222211 10
Q ss_pred hccccceeeCCCCCChHHHHhhchhhhhhcceEEEeecCCccccc---c-CCCcchh----hHHh--------hhhhcCc
Q 014966 162 SFRNLAVVKVPNRVTEDHIIENIQPIFKAKGNIRLATYFPSVNMR---K-STEKSNA----DLVA--------CLAMFGT 225 (415)
Q Consensus 162 ~~~~~~~~~~p~~~s~~yy~~~ilP~l~~~~vi~l~~f~~~~~~r---~-~~~p~~~----q~LR--------Cr~~f~A 225 (415)
.....|..... -..+.||.+..+ ..+..+ . -..|.+. +++. =.+.-.-
T Consensus 210 -------~~~~~w~~~~~--------~~~~~vV~~~~i-~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 210 -------ISTGHWSGEVK--------DKNVQVVELPIV-DSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp -------SCCCBCCCTTG--------GGGCSEEEECCG-GGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -------cccCCCCCccc--------CCCcceEEeecc-ccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 00001111000 012333332110 000000 0 0123221 2221 1112224
Q ss_pred eeechhHHHHHHHHHHHHhhcccCCCCceEEEEeee-ehhhccCCCCCCCCccccCHHH----HHHH---HHHhCCCCCc
Q 014966 226 LELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNKGCHEGNGRKSCYGAHE----IAVF---LRKIGYDKDT 297 (415)
Q Consensus 226 LrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-emla~sgC~~~~~~g~CLtP~E----vgl~---LralGf~~~T 297 (415)
+|++++|++..+++.+++.- ++|.|+||.|. |.+... ..+...+| +..+ |+....+..+
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~-----~~piVGVHIRrGDk~~~E--------~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~ 340 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGF-----KHPVIGVHVRRTDKVGTE--------AAFHPIEEYMVHVEEHFQLLARRMQVDKK 340 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTC-----CSSEEEEEECCC-----C--------CCSCSHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred cCCCHHHHHHHHHHHHHhCC-----CCCEEEEEEeCCCCCccc--------cccCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 89999999988888877642 57999999998 654311 11111122 2222 3444578889
Q ss_pred eEEEecccccccchHHHHhCCCC--cccccCC-ChhhHHhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHH
Q 014966 298 TIYLTQSRWDSSLSVLKDIFPKT--YTKENIM-PADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKR 374 (415)
Q Consensus 298 ~IYlA~g~~~~~l~~Lk~~fPn~--~tKe~L~-~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~~Gnf~~~V~g~R 374 (415)
.||||+.+.+- ++.+++.||+. ++-.... +...-..+. ..+-..+.+|.++.+++|+||+|.++||+..+...|
T Consensus 341 ~ifLATDDp~v-~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s--~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~ 417 (526)
T 2de0_X 341 RVYLATDDPSL-LKEAKTKYPNYEFISDNSISWSAGLHNRYT--ENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIM 417 (526)
T ss_dssp EEEEEESCHHH-HHHHHHHCTTSEEECCCCSSCSSGGGGGTC--CTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHH
T ss_pred eEEEEcCCHHH-HHHHHHhCCCCEEecCcccccccCcccccc--HHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHh
Confidence 99999877532 45667789985 3222111 111111121 112246899999999999999999999999988887
Q ss_pred hhcCCC---ceecCCCC
Q 014966 375 IASGKN---QILIPADI 388 (415)
Q Consensus 375 ~~~G~~---~ti~P~r~ 388 (415)
.-.+.. +...+|.+
T Consensus 418 ~~~~~~~~~~~~SLD~~ 434 (526)
T 2de0_X 418 QTLHPDASANFHSLDDI 434 (526)
T ss_dssp TTSSSCCTTCEEESSCC
T ss_pred cCcCccccccccCCccc
Confidence 655422 44445544
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=98.19 E-value=3.1e-05 Score=75.77 Aligned_cols=260 Identities=14% Similarity=0.179 Sum_probs=129.1
Q ss_pred CCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCCCCCCCCcCChHHHHHhccC--ccEEecc-Cchhh
Q 014966 85 SRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGDERKFEDVYDVNKFIRSLDG--VVKVVKE-LPEEI 161 (415)
Q Consensus 85 snGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLViP~l~~S~w~d~s~F~dIfD~dhFI~sL~~--dV~Ivk~-LP~~~ 161 (415)
+..||.+...|||.+|--+++-|.++|...|.+|++--....+.. ..|.+.| .-.|. .... ...+... .|...
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~~ 78 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQL 78 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBTCTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCCcccCC--CCccccC-ccccc-chhhhcccceecccccccc
Confidence 567999999999988888999999999999999888644321111 2355555 22232 1110 0000100 01000
Q ss_pred hccccceeeCCCCC-----------ChHHHH--hhchhhhh--hc-ceEEEee---cCCccccccCCCcchhhHHhhhhh
Q 014966 162 SFRNLAVVKVPNRV-----------TEDHII--ENIQPIFK--AK-GNIRLAT---YFPSVNMRKSTEKSNADLVACLAM 222 (415)
Q Consensus 162 ~~~~~~~~~~p~~~-----------s~~yy~--~~ilP~l~--~~-~vi~l~~---f~~~~~~r~~~~p~~~q~LRCr~~ 222 (415)
...... .|..+ ..+.+. .....++. .+ ...++.+ +.+.. -.+ .-...
T Consensus 79 -~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~-------~~~----~~~~i 144 (330)
T 2hhc_A 79 -SFPGPF--FPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRC-------SEE----AERLI 144 (330)
T ss_dssp -CCCSSE--ESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSS-------CHH----HHHHH
T ss_pred -cCCCCc--CchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccch-------hhh----hHHHH
Confidence 000000 01111 011110 11111211 11 1122332 11110 111 12334
Q ss_pred cCceeechhHHHHHHHHHHHHhhcccCCCCceEEEEeee-ehhhccCCCCCCC-CccccCHHHHHHHHHHh-C-CC-CCc
Q 014966 223 FGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNKGCHEGNG-RKSCYGAHEIAVFLRKI-G-YD-KDT 297 (415)
Q Consensus 223 f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-emla~sgC~~~~~-~g~CLtP~Evgl~Lral-G-f~-~~T 297 (415)
|.-|+++++|++..+++.+.+-. +.++||||.|. |-. ..|.+..- ...|..-++.-.-++.+ . .+ ++.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-----~~~~VGVHIRrgD~~--~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 217 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-----GHSIIGVHVRHGNGE--DIMEHAPYWADSELALHQVCMAIRKAKALSYPKPV 217 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-----TSEEEEEEECC--------------CHHHHHHHHHHHHHHHHHHTSCCSSCE
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-----CCceEEEEEecCCCC--cccccCcchHHHhHHHHHHHHHHHHHHhccCcCce
Confidence 57789999999988888765421 25999999997 511 12221100 01122223332222222 2 22 468
Q ss_pred eEEEecccccccchHHHHhCCCCccc-ccCCC-h-hhHH-hhhcccccchhhhhhhhhhhCCCeee-ecCCCchhHHHH
Q 014966 298 TIYLTQSRWDSSLSVLKDIFPKTYTK-ENIMP-A-DKKE-KFLDSADSEFEKVIDFYLCSQSDAFV-PAISGLFYANVA 371 (415)
Q Consensus 298 ~IYlA~g~~~~~l~~Lk~~fPn~~tK-e~L~~-~-eeL~-~f~~~~~s~~~AAlDy~Vc~~SDvFv-~t~~Gnf~~~V~ 371 (415)
.||||+.+.+ .++.+++.||++.+- ..+.. . ..+- +..+. .+...+.+|.+..+++|++| .+..|+|+...+
T Consensus 218 ~vfvaSDd~~-~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 218 KVFLCTDSAQ-VLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGI-EGGASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp EEEEEESCHH-HHHHHHHHSTTEECCCC-----------CHHHHH-HHHHHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred EEEEEeCCHH-HHHHHHHHcCCcccccceeecccccccccCchhh-ccchHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 9999999874 578899999984332 11111 0 0000 00000 12336899999999999999 545889987665
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=69.60 E-value=4.3 Score=30.45 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=36.1
Q ss_pred cccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCeeeecC
Q 014966 307 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAI 362 (415)
Q Consensus 307 ~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~ 362 (415)
+..++.|+++||++ ..+-++..+....+.+.+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-------d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-------DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-------CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 56689999999996 33344444444457789999999999888776654
No 6
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=50.99 E-value=5.6 Score=33.78 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhh
Q 014966 282 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 352 (415)
Q Consensus 282 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 352 (415)
+||-.+||+|||| |+ +||+.|.+.. ..|.|.++++||+++|=
T Consensus 73 eev~~~lK~L~YP----------------------~~--isKS~L~a~g-----~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 73 EEVPRIFKDLGYP----------------------FA--LSKSSMYTVG-----APHTWPHIVAALVWLID 114 (120)
T ss_dssp HHHHHHHHHTTCC----------------------SC--CCHHHHHTTT-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----------------------ce--eCHHHhcCCC-----CCccHHHHHHHHHHHHH
Confidence 7788999999988 33 6777666543 23457778899998873
No 7
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.08 E-value=11 Score=36.73 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhh
Q 014966 282 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYL 351 (415)
Q Consensus 282 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~V 351 (415)
+||-.+||+|||| |+ +||+.|.++. ..|.|..+++||+++|
T Consensus 71 eev~~~lK~L~YP----------------------~~--isKS~L~a~g-----~pHsWp~~Lg~L~WLv 111 (315)
T 2ve7_A 71 EEVPRIFKDLGYP----------------------FA--LSKSSMYTVG-----APHTWPHIVAALVWLI 111 (315)
T ss_dssp HHHHHHHHHTTCS----------------------SC--CCHHHHHTTT-----STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----------------------ce--eCHHHhcCCC-----CCCcHHHHHHHHHHHH
Confidence 7789999999998 43 6777776643 2345778889999887
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.34 E-value=19 Score=27.67 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=26.7
Q ss_pred cccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCC
Q 014966 307 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQS 355 (415)
Q Consensus 307 ~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~S 355 (415)
+..++.|++|||++- + +.++.-+....+.+.+|||-+..+..
T Consensus 19 ~~~v~~L~~MFP~lD-~------~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMD-Y------DIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHHCSSSC-H------HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-H------HHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 455889999999963 2 23333332224567899998776553
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.03 E-value=28 Score=25.75 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=19.9
Q ss_pred ccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhh
Q 014966 308 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 352 (415)
Q Consensus 308 ~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 352 (415)
..++.|++|||++- +| -++.......+.+.++||....
T Consensus 14 ~~~~~L~~MFP~lD-~e------vI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PS------LIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSC-HH------HHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccCC-HH------HHHHHHHHcCCCHHHHHHHHHh
Confidence 45789999999973 33 2222222224667888886554
No 10
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=24.30 E-value=28 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.4
Q ss_pred eeechhHHHHHHHHHHHHhh
Q 014966 226 LELQPDVNEVVDSMVERLRT 245 (415)
Q Consensus 226 LrF~p~I~~lg~~lv~Rlr~ 245 (415)
+-|+.-+.++|.++|+||++
T Consensus 3 vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 3 LLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHc
Confidence 45778899999999999995
Done!