Query 014966
Match_columns 415
No_of_seqs 176 out of 405
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014966.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014966hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 70.8 2.1 0.00015 30.7 3.9 50 306-362 9-58 (59)
2 d1mn3a_ a.5.2.4 (A:) Vacuolar 26.1 23 0.0017 24.5 2.9 38 308-352 14-51 (54)
3 d1nb5i_ d.17.1.2 (I:) Cystatin 24.5 37 0.0027 26.1 4.2 37 229-265 13-49 (98)
4 d1oqya2 a.5.2.1 (A:317-360) DN 21.9 5.8 0.00042 26.6 -1.0 27 280-306 1-31 (44)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 21.1 26 0.0019 28.0 2.8 39 287-327 95-133 (136)
6 d1vjna_ d.157.1.4 (A:) Hypothe 20.4 64 0.0047 26.7 5.5 53 103-160 142-200 (209)
7 d1uwza_ c.97.1.1 (A:) mono-dom 19.1 43 0.0032 26.3 3.8 39 287-326 92-130 (130)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 19.1 21 0.0016 27.7 1.7 18 279-296 3-20 (112)
9 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 18.1 17 0.0012 25.2 0.8 43 308-357 19-61 (63)
10 d1stfi_ d.17.1.2 (I:) Cystatin 14.9 54 0.004 25.0 3.2 37 229-265 13-49 (98)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.83 E-value=2.1 Score=30.67 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=35.3
Q ss_pred ccccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCeeeecC
Q 014966 306 WDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAI 362 (415)
Q Consensus 306 ~~~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDvFv~t~ 362 (415)
-+..+..|++|||++- ++ -++..+....+.+.+|||-+.-..-+.|-|+.
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~------vI~~VL~a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QE------VIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HH------HHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCCC-HH------HHHHHHHHcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 3566999999999974 22 22233333356789999999998888887764
No 2
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.11 E-value=23 Score=24.47 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred ccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhh
Q 014966 308 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 352 (415)
Q Consensus 308 ~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 352 (415)
..++.|++|||++- .+-++.......+.+.+|||....
T Consensus 14 e~~~~Lk~MFP~~D-------~~VI~~VL~a~~G~vd~aidaLL~ 51 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD-------PSLIEDVCIAKKSRIEPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHCTTSC-------HHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45789999999963 223333333335677889887643
No 3
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.54 E-value=37 Score=26.07 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHhhcccCCCCceEEEEeeeehhh
Q 014966 229 QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLD 265 (415)
Q Consensus 229 ~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~emla 265 (415)
++|||++++++..-+.++..+.-..|-|+.-|...+|
T Consensus 13 t~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVA 49 (98)
T d1nb5i_ 13 TPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVA 49 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEc
Confidence 7899999999999998876665667888888877665
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.94 E-value=5.8 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=19.0
Q ss_pred CHHHHH--HHHHHhCCCCCce--EEEecccc
Q 014966 280 GAHEIA--VFLRKIGYDKDTT--IYLTQSRW 306 (415)
Q Consensus 280 tP~Evg--l~LralGf~~~T~--IYlA~g~~ 306 (415)
||+|-. .=|.+|||+++.. +|+|-.+-
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdKN 31 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEKN 31 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSC
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 565543 4689999998874 67776653
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.10 E-value=26 Score=27.96 Aligned_cols=39 Identities=15% Similarity=0.497 Sum_probs=29.7
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccCC
Q 014966 287 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIM 327 (415)
Q Consensus 287 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L~ 327 (415)
+|.. |..++.||+...+.+.....|+++.|.-+++++|-
T Consensus 95 ~l~E--~~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 95 VMRE--FGTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHH--TCSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHh--hCCCceEEEECCCCCEEEeEHHHhCcCCCChHHhC
Confidence 4444 45688999998877655668999999999888663
No 6
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.39 E-value=64 Score=26.72 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHhHHHHHHHhcceEEeeccCCCCCCC-CCCCCCcCChHHHHHhccC-----ccEEeccCchh
Q 014966 103 QIADAVVVARVLRATLVVPDIRGSKPGD-ERKFEDVYDVNKFIRSLDG-----VVKVVKELPEE 160 (415)
Q Consensus 103 ~IcdaV~vArlLnATLViP~l~~S~w~d-~s~F~dIfD~dhFI~sL~~-----dV~Ivk~LP~~ 160 (415)
.--+|+.+|+.|++..|||-= |+. ...| ++=..|.|++.++. ++-.+.++|++
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred CHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 456899999999999999952 322 2222 34456888887763 33334555643
No 7
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=19.10 E-value=43 Score=26.34 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCCcccccC
Q 014966 287 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 326 (415)
Q Consensus 287 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~fPn~~tKe~L 326 (415)
+|..++ +.++.||+...+.+.....|+++.|.=+++++|
T Consensus 92 ~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 92 VISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 344443 467899999887643334688999998888875
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=19.07 E-value=21 Score=27.68 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.9
Q ss_pred cCHHHHHHHHHHhCCCCC
Q 014966 279 YGAHEIAVFLRKIGYDKD 296 (415)
Q Consensus 279 LtP~Evgl~LralGf~~~ 296 (415)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999744
No 9
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.13 E-value=17 Score=25.23 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=26.8
Q ss_pred ccchHHHHhCCCCcccccCCChhhHHhhhcccccchhhhhhhhhhhCCCe
Q 014966 308 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDA 357 (415)
Q Consensus 308 ~~l~~Lk~~fPn~~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc~~SDv 357 (415)
..++.|+++-|...+...-...-+. .+-+..|+|||-.++.++
T Consensus 19 ~~~~~L~~llP~~~~~~~~~~k~sK-------a~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 19 VALHELASLIPAEWKQQNVSAAPSK-------ATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHHTSCHHHHTSSCCCCSCT-------THHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCcccccCCcccccH-------HHHHHHHHHHHHHHHHhh
Confidence 4578889998875443322221111 233479999999988764
No 10
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=54 Score=25.00 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHhhcccCCCCceEEEEeeeehhh
Q 014966 229 QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLD 265 (415)
Q Consensus 229 ~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~emla 265 (415)
+||||++.+++...|.++....---|-|+..|.-.+|
T Consensus 13 t~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVa 49 (98)
T d1stfi_ 13 TAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVA 49 (98)
T ss_dssp CHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEc
Confidence 7899999999999998876655556777777766554
Done!