Query 014967
Match_columns 415
No_of_seqs 116 out of 141
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 01:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05003 DUF668: Protein of un 100.0 1.6E-30 3.5E-35 216.3 5.0 63 352-414 1-66 (89)
2 PF11961 DUF3475: Domain of un 99.9 1E-28 2.2E-33 190.8 4.1 57 132-188 1-57 (57)
3 PF05527 DUF758: Domain of unk 74.2 86 0.0019 30.2 13.0 54 184-266 34-94 (186)
4 TIGR02865 spore_II_E stage II 63.4 53 0.0011 37.3 10.4 176 89-267 190-401 (764)
5 PF04111 APG6: Autophagy prote 35.9 62 0.0014 32.9 5.0 29 285-313 115-143 (314)
6 KOG3498 Preprotein translocase 35.1 31 0.00068 28.3 2.2 31 187-217 6-36 (67)
7 PF09325 Vps5: Vps5 C terminal 32.6 4.1E+02 0.0089 24.7 14.3 120 183-304 52-184 (236)
8 PF01418 HTH_6: Helix-turn-hel 31.1 37 0.00081 27.2 2.1 69 139-218 2-70 (77)
9 PF11598 COMP: Cartilage oligo 30.5 58 0.0012 24.8 2.9 20 285-304 17-36 (45)
10 PF13094 CENP-Q: CENP-Q, a CEN 27.2 2.3E+02 0.0051 25.5 6.8 52 249-305 33-84 (160)
11 TIGR01834 PHA_synth_III_E poly 26.8 4.9E+02 0.011 27.2 9.6 48 257-305 263-311 (320)
12 PF06005 DUF904: Protein of un 26.8 2.4E+02 0.0052 23.1 6.1 16 304-319 54-69 (72)
13 cd07665 BAR_SNX1 The Bin/Amphi 25.0 6.8E+02 0.015 24.8 12.9 133 185-323 52-193 (234)
14 COG2443 Sss1 Preprotein transl 25.0 49 0.0011 27.1 1.7 31 186-216 5-35 (65)
15 PF04899 MbeD_MobD: MbeD/MobD 24.3 1.9E+02 0.004 23.8 5.0 39 256-302 9-47 (70)
16 PF05983 Med7: MED7 protein; 23.9 4.3E+02 0.0094 24.5 8.0 66 164-250 52-117 (162)
17 PF05597 Phasin: Poly(hydroxya 22.6 4.4E+02 0.0096 24.0 7.6 48 256-304 82-130 (132)
18 KOG4552 Vitamin-D-receptor int 22.4 8.1E+02 0.018 24.7 9.9 72 236-318 56-134 (272)
19 PRK04778 septation ring format 21.1 4.1E+02 0.009 29.0 8.3 39 233-271 201-244 (569)
20 KOG4403 Cell surface glycoprot 20.8 5E+02 0.011 28.7 8.6 85 168-252 166-261 (575)
21 PF10267 Tmemb_cc2: Predicted 20.0 1.1E+03 0.024 25.3 11.9 89 234-335 255-358 (395)
No 1
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=99.96 E-value=1.6e-30 Score=216.35 Aligned_cols=63 Identities=56% Similarity=0.916 Sum_probs=61.2
Q ss_pred CcchhhhhhHHHHHHHHHHHhhhCCCCCCCchhHHhhccCchHHHHHHhhhccCCCCc---ccccC
Q 014967 352 SLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGK---EEVCS 414 (415)
Q Consensus 352 TLG~AgLALHYANVIi~IEkLv~~P~~v~~~aRD~LYqmLP~sIRsaLRskLr~~~~~---~e~~~ 414 (415)
|||+|||||||||||+|||+|+++|++||+|+||+||||||++||++||+|||++..+ +|+++
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~~~~d~~~a 66 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKKAIYDELLA 66 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccccccchhhH
Confidence 8999999999999999999999999999999999999999999999999999999999 88775
No 2
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.95 E-value=1e-28 Score=190.82 Aligned_cols=57 Identities=61% Similarity=0.780 Sum_probs=56.4
Q ss_pred eehHHHHHHHHHHHhhhhhcCHHHHHHHhhhhccccccccccccChHHHHHHHHHHH
Q 014967 132 ILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADK 188 (415)
Q Consensus 132 ILAFEVAntMsK~~~L~~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk 188 (415)
||||||||||||++||||||||++|.+||+||++|||||+|||+|++|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 3
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=74.22 E-value=86 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccccchhHHHhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH-------HH
Q 014967 184 AAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYH-------EY 256 (415)
Q Consensus 184 A~AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~F~~L~~~~~~~~~~~k~ae~k~kkmerlV~~Ta~LY~-------EL 256 (415)
..+|.+++|-.++.++.+ ..++|++.++.+.+.|--..-||+ |+
T Consensus 34 tsselLD~ly~l~K~~t~-----------------------------~kkeA~ki~KniIKi~vKigvl~rn~qf~~eEl 84 (186)
T PF05527_consen 34 TSSELLDELYRLLKEYTG-----------------------------NKKEAEKIIKNIIKIVVKIGVLYRNNQFSDEEL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS------------------------------HHHHHHHHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred hHHHHHHHHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHH
Confidence 457778888888887652 479999999999999999999998 55
Q ss_pred hHHHHHHHHH
Q 014967 257 NALDRFELDY 266 (415)
Q Consensus 257 eaL~~lEq~~ 266 (415)
..+++|-+.+
T Consensus 85 ~~~~~fr~k~ 94 (186)
T PF05527_consen 85 ALAEKFRKKF 94 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 4
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=63.35 E-value=53 Score=37.32 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=92.3
Q ss_pred ccccccccchhhHHhhhccCcccccCCC--------CCceeccccCCceee-eehHHHHHHHHHHHh-----hhhhcCHH
Q 014967 89 GRGGAAGLAMTVDVLDALGSSMSSLNAS--------SGFISGVTSKGNKIS-ILAFEVANTIAKGAN-----LFQSLSEE 154 (415)
Q Consensus 89 g~a~~~g~~kav~vldtlgssm~~l~~~--------~gf~sg~~~k~~kIg-ILAFEVAntMsK~~~-----L~~SLSd~ 154 (415)
+-+|-+|+|.|+.|.=-+-.|+++.+.- .|+.+|.-.+.+|+| +++|=+++++..+.. +...|-|-
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~~~~e~ 269 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSLALYEA 269 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3456678899999887777777664432 166899988888865 689999998875542 11111111
Q ss_pred HHHHHhhhhccc---cccccccc-------cChHHH--HHHHHHHHHHHHHHHHHHHHH-hhccCCCc----cccchhHH
Q 014967 155 NIQFLKTEVLHS---SGVQELVS-------TDMKEL--LRIAAADKREEFDVFLREVIR-FGNLCKDP----QWHNLDRY 217 (415)
Q Consensus 155 eI~rLr~evL~S---eGV~~LVS-------~D~~~L--L~LA~AEk~eeL~~~A~~VaR-lG~rC~DP----~lh~fdr~ 217 (415)
=|+-+-=-+++. +.+.+.++ ..+.+. ++=..+++++++..+=.++++ |++.+.++ .=.+.+.+
T Consensus 270 ~ia~~lFll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf~~~~~~~~~~~~~~~~~~~ 349 (764)
T TIGR02865 270 LIATLLFLLIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTFVEALASNEKLTMKRKSSYL 349 (764)
T ss_pred HHHHHHHHHhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHH
Confidence 111111001121 12222222 122222 333445565555444444444 43344332 12457788
Q ss_pred Hhhhhhhcc-----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014967 218 FSNLKSEYL-----NHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYR 267 (415)
Q Consensus 218 F~~L~~~~~-----~~~~~~k~ae~k~kkmerlV~~Ta~LY~ELeaL~~lEq~~r 267 (415)
|+.+....- -...|.++.+...+-|..+.+..-+ +.+.+ .++.+.++
T Consensus 350 ~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~e~-~~~~~--~~~p~~~~ 401 (764)
T TIGR02865 350 LENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENLEE-KKDPN--SKLPDEFE 401 (764)
T ss_pred HHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHHHh-cCCch--hhhhHHHH
Confidence 877743322 2224667777777777777665444 22333 44555554
No 5
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.88 E-value=62 Score=32.90 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccchhcHH
Q 014967 285 VTFLHSDLKQQRKLVRSLKKKSLWSRNLE 313 (415)
Q Consensus 285 l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d 313 (415)
...+...+.+-+.++.+|++...||.+|.
T Consensus 115 ~~sl~~q~~~~~~~L~~L~ktNv~n~~F~ 143 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKTNVYNDTFH 143 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT--TTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhceee
Confidence 55777788888999999999999999986
No 6
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.09 E-value=31 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccccchhHH
Q 014967 187 DKREEFDVFLREVIRFGNLCKDPQWHNLDRY 217 (415)
Q Consensus 187 Ek~eeL~~~A~~VaRlG~rC~DP~lh~fdr~ 217 (415)
.+.+-++.|+++-.||-+||.-|....|-..
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki 36 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKI 36 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3567789999999999999999987777654
No 7
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=32.63 E-value=4.1e+02 Score=24.66 Aligned_cols=120 Identities=11% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCc----cccchhHHHhhhhhhccCCCCchhHH---HHHHHHHHHHHHHHHHHHHH
Q 014967 183 IAAADKREEFDVFLREVIRFGNLCKDP----QWHNLDRYFSNLKSEYLNHRQPRGEA---ETRMKELTTLAQHTSELYHE 255 (415)
Q Consensus 183 LA~AEk~eeL~~~A~~VaRlG~rC~DP----~lh~fdr~F~~L~~~~~~~~~~~k~a---e~k~kkmerlV~~Ta~LY~E 255 (415)
=...|....+..|+.+...||.-..++ .|+.|..++..+..-...+ ...+. ...++...+++.+.-.+.+.
T Consensus 52 ~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~--a~~~~~~l~~~L~ey~~~~~svk~~l~~ 129 (236)
T PF09325_consen 52 KRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQ--ANQEEETLGEPLREYLRYIESVKEALNR 129 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999877764 3455555555553222111 11222 22344444444444333332
Q ss_pred ----HhHHHHHHHHHHHHHHhhccCCCC--CCCcchHHHHHHHHHHHHHHHhhhh
Q 014967 256 ----YNALDRFELDYRRKLEELDSLNLP--RKGEGVTFLHSDLKQQRKLVRSLKK 304 (415)
Q Consensus 256 ----LeaL~~lEq~~rrk~~~~~~~~~~--~~ge~l~~lqqkl~~QRq~Vk~LKk 304 (415)
+..+...++++.++....+....+ .+.+.+..++.+|..-.+.|..+++
T Consensus 130 R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 130 RDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777666554433332 2235677778887777777766653
No 8
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=31.08 E-value=37 Score=27.15 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhcCHHHHHHHhhhhccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccchhHHH
Q 014967 139 NTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYF 218 (415)
Q Consensus 139 ntMsK~~~L~~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~F 218 (415)
|.+.++-..+..||+.|-. |..-|-++.+.+..+-..|..+.+.+--.+|.||.+++.=..|..|-..+
T Consensus 2 ~l~~~i~~~~~~ls~~e~~-----------Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~efk~~l 70 (77)
T PF01418_consen 2 NLLEKIRSQYNSLSPTEKK-----------IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEFKIAL 70 (77)
T ss_dssp -HHHHHHHHGGGS-HHHHH-----------HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHHHHHH
T ss_pred cHHHHHHHHHhhCCHHHHH-----------HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777788889888744 33445567888888999999999999999999999999866666554443
No 9
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.53 E-value=58 Score=24.81 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 014967 285 VTFLHSDLKQQRKLVRSLKK 304 (415)
Q Consensus 285 l~~lqqkl~~QRq~Vk~LKk 304 (415)
+.+++..++.|++|+..||.
T Consensus 17 l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999985
No 10
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.19 E-value=2.3e+02 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhc
Q 014967 249 TSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKK 305 (415)
Q Consensus 249 Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk~ 305 (415)
-..|..+++.|+.|+..+++....-++ ..+.+..|++.++.+..+++...++
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~-----d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALER-----DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344568889999999988766543321 2346888999998888887776554
No 11
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.82 E-value=4.9e+02 Score=27.22 Aligned_cols=48 Identities=38% Similarity=0.557 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHh-hccCCCCCCCcchHHHHHHHHHHHHHHHhhhhc
Q 014967 257 NALDRFELDYRRKLEE-LDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKK 305 (415)
Q Consensus 257 eaL~~lEq~~rrk~~~-~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk~ 305 (415)
+++-++-+.+.+..++ -.+++.|.+. -+.+++++|-.=|++||+||+.
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRs-ElDe~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRS-ELDEAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333222 2367777653 4778888888888888888764
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.81 E-value=2.4e+02 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.673 Sum_probs=10.7
Q ss_pred hcccchhcHHHHHHHH
Q 014967 304 KKSLWSRNLEEVMEKF 319 (415)
Q Consensus 304 k~SLWsrt~d~vVekL 319 (415)
+.+-|...++.++.+|
T Consensus 54 e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 54 ERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566777777776665
No 13
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=25.03 E-value=6.8e+02 Score=24.76 Aligned_cols=133 Identities=8% Similarity=0.081 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccc----cchhHHHhhhhhhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHH----
Q 014967 185 AADKREEFDVFLREVIRFGNLCKDPQW----HNLDRYFSNLKSEYLNHR-QPRGEAETRMKELTTLAQHTSELYHE---- 255 (415)
Q Consensus 185 ~AEk~eeL~~~A~~VaRlG~rC~DP~l----h~fdr~F~~L~~~~~~~~-~~~k~ae~k~kkmerlV~~Ta~LY~E---- 255 (415)
..|....+..||.++.-||+-=.+|.+ .+|..+..++......+- +-.-...-.++..-|+|++....+.+
T Consensus 52 r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~ 131 (234)
T cd07665 52 RKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKT 131 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888899999988874444543 344444444422221110 01123445566667777777665554
Q ss_pred HhHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHH
Q 014967 256 YNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIA 323 (415)
Q Consensus 256 LeaL~~lEq~~rrk~~~~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV 323 (415)
.+..-.+++++.+|....+.+....+.+.+...+.+|..-.+.|...++ .||.|...+=+=+
T Consensus 132 ~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~------~fe~is~~ik~El 193 (234)
T cd07665 132 WQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER------DFERISATVRKEV 193 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 4556667888877655444332223346788888888876677777776 4565555544333
No 14
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=25.00 E-value=49 Score=27.08 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccchhH
Q 014967 186 ADKREEFDVFLREVIRFGNLCKDPQWHNLDR 216 (415)
Q Consensus 186 AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr 216 (415)
-++.|++..|-++-.|+=++|+-|.|..|--
T Consensus 5 ~~~~e~~~~~lke~~rvl~~arKP~~eEy~~ 35 (65)
T COG2443 5 MDKPEELREFLKEYRRVLKVARKPDWEEYSK 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788999999999999999999999977643
No 15
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.33 E-value=1.9e+02 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhh
Q 014967 256 YNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSL 302 (415)
Q Consensus 256 LeaL~~lEq~~rrk~~~~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~L 302 (415)
+.||..|+++|.+..++|++ +...|+......+++-..|
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~--------sy~~Lq~~~~~t~~~~a~L 47 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQS--------SYADLQHMFEQTSQENAAL 47 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHH
Confidence 56889999999999998873 3556666666655554433
No 16
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=23.89 E-value=4.3e+02 Score=24.52 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=29.2
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccchhHHHhhhhhhccCCCCchhHHHHHHHHHH
Q 014967 164 LHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELT 243 (415)
Q Consensus 164 L~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~F~~L~~~~~~~~~~~k~ae~k~kkme 243 (415)
|.+.|++.|-..+.+ .-.-.|+++||+.+.++.- .||=.+.+.+.... ...+++++.|.
T Consensus 52 L~~~gi~qLy~~~~~---~~~~~d~~~eLkkL~~sll-----------~nfleLl~~l~~~P-------~~~~~ki~~i~ 110 (162)
T PF05983_consen 52 LESQGIRQLYPPDDD---PSPSVDRKKELKKLNKSLL-----------LNFLELLDILSKNP-------SQYERKIEDIR 110 (162)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH-----------HHHHHHTTSS---C-------CCHHHHHHHHH
T ss_pred chhccccccCCCccc---cCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHhCC-------ccHHHHHHHHH
Confidence 677888888877722 2345788999999998876 35544444433332 23455777777
Q ss_pred HHHHHHH
Q 014967 244 TLAQHTS 250 (415)
Q Consensus 244 rlV~~Ta 250 (415)
.+..+--
T Consensus 111 ~L~~Nmh 117 (162)
T PF05983_consen 111 LLFINMH 117 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 17
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.57 E-value=4.4e+02 Score=23.95 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHHh-hccCCCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 014967 256 YNALDRFELDYRRKLEE-LDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKK 304 (415)
Q Consensus 256 LeaL~~lEq~~rrk~~~-~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk 304 (415)
.+.++++|+.+...... -..++.|.+ .-+..|..+|..--.+|..|..
T Consensus 82 ~~~~dklE~~fd~rV~~aL~rLgvPs~-~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 82 TGQWDKLEQAFDERVARALNRLGVPSR-KDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888877665432 335667653 3478888888887777777754
No 18
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.41 E-value=8.1e+02 Score=24.71 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HH------HHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccc
Q 014967 236 ETRMKELTTLAQHTSELYHEYNALDR-FE------LDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLW 308 (415)
Q Consensus 236 e~k~kkmerlV~~Ta~LY~ELeaL~~-lE------q~~rrk~~~~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk~SLW 308 (415)
+-.+++|+++|-.-++..|+|+.|.. .| |.+++-+. +.-.+|-..+..-+|+.++.++.-+-
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK-----------~aE~iLtta~fqA~qKLksi~~A~kr 124 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK-----------SAEVILTTACFQANQKLKSIKEAEKR 124 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688999999988888888887742 22 22222222 12246777788888999999888777
Q ss_pred hhcHHHHHHH
Q 014967 309 SRNLEEVMEK 318 (415)
Q Consensus 309 srt~d~vVek 318 (415)
--+-|+++..
T Consensus 125 pvsSEelIKy 134 (272)
T KOG4552|consen 125 PVSSEELIKY 134 (272)
T ss_pred CCCHHHHHHH
Confidence 7777776543
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.07 E-value=4.1e+02 Score=29.03 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHH
Q 014967 233 GEAETRMKELTTLAQHTSELYHEYNA-----LDRFELDYRRKLE 271 (415)
Q Consensus 233 k~ae~k~kkmerlV~~Ta~LY~ELea-----L~~lEq~~rrk~~ 271 (415)
.+++..+..|+.++..--.||+|+.. |++|+.+|+++..
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55677788888888888888988754 8999999987765
No 20
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.82 E-value=5e+02 Score=28.73 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=53.9
Q ss_pred ccccccccChHHH---HHHHHHHHHHHHHHHHHHHHHhhccCCCc-cc-cchhHHHhhhh--hhcc----CCCCchhHHH
Q 014967 168 GVQELVSTDMKEL---LRIAAADKREEFDVFLREVIRFGNLCKDP-QW-HNLDRYFSNLK--SEYL----NHRQPRGEAE 236 (415)
Q Consensus 168 GV~~LVS~D~~~L---L~LA~AEk~eeL~~~A~~VaRlG~rC~DP-~l-h~fdr~F~~L~--~~~~----~~~~~~k~ae 236 (415)
..-+|-+..-+|+ |.|-----++-|..-|=.|+=||---++| .| .+|=.+|.-+. .+.+ ..+..++.+.
T Consensus 166 alPRlAv~n~~f~~~~Lgikd~~hrQKlqLkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~ 245 (575)
T KOG4403|consen 166 ALPRLAVPNSDFLGKVLGIKDRSHRQKLQLKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVN 245 (575)
T ss_pred cccccccCchHHhhhhhccCchHHHHhhhhhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 3445666666665 44444556788888899999999766665 56 78888888763 2222 2222456666
Q ss_pred HHHHHHHHHHHHHHHH
Q 014967 237 TRMKELTTLAQHTSEL 252 (415)
Q Consensus 237 ~k~kkmerlV~~Ta~L 252 (415)
+.|++||-|-.+-.+|
T Consensus 246 km~kdle~Lq~aEqsl 261 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSL 261 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777665554443
No 21
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.04 E-value=1.1e+03 Score=25.31 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHH----HHHH-----HHHHHHHHhhccCCCCCCCcchHHHHHHHH----HHHHHH
Q 014967 234 EAETRMKELTTLAQHTSELYH-EYNAL----DRFE-----LDYRRKLEELDSLNLPRKGEGVTFLHSDLK----QQRKLV 299 (415)
Q Consensus 234 ~ae~k~kkmerlV~~Ta~LY~-ELeaL----~~lE-----q~~rrk~~~~~~~~~~~~ge~l~~lqqkl~----~QRq~V 299 (415)
+-.-+.++||..|.-..+|++ ||..| +..| |.|.|...=| |.++.+|.+|. .|.|+|
T Consensus 255 EEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~---------E~~Es~qtRisklE~~~~Qq~ 325 (395)
T PF10267_consen 255 EERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW---------EVMESCQTRISKLEQQQQQQV 325 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHhhhh
Confidence 334556667777777777765 44433 3344 4444443322 34566665543 466778
Q ss_pred Hhhhhcc-cchhcHHHHHHHHHHHHHHHHHHHHHHhC
Q 014967 300 RSLKKKS-LWSRNLEEVMEKFVEIAAYMHQAILEAFG 335 (415)
Q Consensus 300 k~LKk~S-LWsrt~d~vVekLvriV~~I~~rI~~VFG 335 (415)
-.+.-.. +|.| .++-++..++.++. -|..||-
T Consensus 326 ~q~e~~~n~~~r---~~l~k~inllL~l~-~vlLv~v 358 (395)
T PF10267_consen 326 VQLEGTENSRAR---ALLGKLINLLLTLL-TVLLVFV 358 (395)
T ss_pred hhhcccccccHH---HHHHHHHHHHHHHH-HHHHHHH
Confidence 7776655 7887 67777777776655 4555554
Done!