Query 014967
Match_columns 415
No_of_seqs 116 out of 141
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f4m_A Tumor necrosis factor, 84.8 21 0.00071 32.3 13.5 137 185-374 12-157 (161)
2 3ghg_A Fibrinogen alpha chain; 75.5 3.9 0.00013 43.3 6.1 86 285-390 119-205 (562)
3 3hls_A Guanylate cyclase solub 68.0 1.9 6.6E-05 33.4 1.4 16 385-400 49-64 (66)
4 3twe_A Alpha4H; unknown functi 60.9 13 0.00044 24.3 4.0 23 248-270 2-24 (27)
5 1deq_A Fibrinogen (alpha chain 25.3 1.2E+02 0.0041 31.0 6.5 86 212-302 63-153 (390)
6 4g63_A Cytosolic IMP-GMP speci 22.3 1.3E+02 0.0044 31.2 6.2 10 233-242 325-334 (470)
7 3mp7_B Preprotein translocase 22.1 20 0.00068 27.5 0.1 32 186-217 2-33 (61)
8 3ssq_A Carbon dioxide concentr 21.1 51 0.0018 28.5 2.5 41 107-147 2-49 (122)
9 1fyj_A Multifunctional aminoac 20.4 1.3E+02 0.0046 22.1 4.4 47 286-336 3-49 (57)
10 2djv_A Methionyl-tRNA syntheta 18.9 1.3E+02 0.0043 24.0 4.2 50 283-336 13-62 (79)
No 1
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=84.82 E-value=21 Score=32.34 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccccchhHHHhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH-------HHh
Q 014967 185 AADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYH-------EYN 257 (415)
Q Consensus 185 ~AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~F~~L~~~~~~~~~~~k~ae~k~kkmerlV~~Ta~LY~-------ELe 257 (415)
-+|.+++|-.++.++.+ .+++|++.++.+.+.|-...-||+ ||.
T Consensus 12 sselLD~lyrl~K~~t~-----------------------------nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~ 62 (161)
T 3f4m_A 12 SSEVLDELYRVSKEYTH-----------------------------SRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELA 62 (161)
T ss_dssp HHHHHHHHHHHHHHHHS-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHH
Confidence 46777888888777773 579999999999999999999998 676
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014967 258 ALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSD 337 (415)
Q Consensus 258 aL~~lEq~~rrk~~~~~~~~~~~~ge~l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV~~I~~rI~~VFG~~ 337 (415)
.+++|-+.++.---..=|-......-....|..-+..-|+....|=+.-|=-+| +.||..||+-.
T Consensus 63 ~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~HLT~KS---------------~~Ri~~vF~~f 127 (161)
T 3f4m_A 63 LATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKS---------------HGRIRHVFDHF 127 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTSCHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhhCCcch---------------HHHHHHHHHHh
Confidence 666665554321100001111111112445777777777766655555554444 67889998643
Q ss_pred CCC--CCCCCCCCCCCCcchhhhhhHHHHHHHHHHHhhh
Q 014967 338 GRT--LISDDPAKIPESLGSAGLALHYANIINQIDNIVS 374 (415)
Q Consensus 338 ~~~--~~~~~~~~p~~TLG~AgLALHYANVIi~IEkLv~ 374 (415)
+.+ +..+.. + -..-|--+|+--+++|+-
T Consensus 128 ~~~efL~~lf~---~------~~~~~L~kI~~~Lnklld 157 (161)
T 3f4m_A 128 SDPGLLTALYG---P------DFTQHLGKICDGLRKLLD 157 (161)
T ss_dssp TCHHHHHHHTS---G------GGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---c------HHHHHHHHHHHHHHHHHh
Confidence 211 111111 1 344566677777777653
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.53 E-value=3.9 Score=43.30 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCCCCCCCCCCcchhhhhhHHH
Q 014967 285 VTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTL-ISDDPAKIPESLGSAGLALHYA 363 (415)
Q Consensus 285 l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV~~I~~rI~~VFG~~~~~~-~~~~~~~p~~TLG~AgLALHYA 363 (415)
+..|+.+|..|-+.++.|+. ++++.+.+|-|.=--|-..|..-.|+-.... -.++ | =-|-
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd-------~------~sY~ 179 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVD-------L------KDYE 179 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCC-------H------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchheeecc-------h------HHHH
Confidence 44666666666666666653 4666666666666667778877777632111 0111 1 1499
Q ss_pred HHHHHHHHhhhCCCCCCCchhHHhhcc
Q 014967 364 NIINQIDNIVSRPSSLPPNMRDTLYNG 390 (415)
Q Consensus 364 NVIi~IEkLv~~P~~v~~~aRD~LYqm 390 (415)
|+==|+|.+. ...+.|...|..||.|
T Consensus 180 ~~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 180 DQQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHHh-hcccCCccccccchhc
Confidence 9999999976 4567888888888875
No 3
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=67.99 E-value=1.9 Score=33.45 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.3
Q ss_pred HHhhccCchHHHHHHh
Q 014967 385 DTLYNGLPATVKMNLR 400 (415)
Q Consensus 385 D~LYqmLP~sIRsaLR 400 (415)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 5578888888877776
No 4
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.88 E-value=13 Score=24.30 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 014967 248 HTSELYHEYNALDRFELDYRRKL 270 (415)
Q Consensus 248 ~Ta~LY~ELeaL~~lEq~~rrk~ 270 (415)
+.-+||.|||-|.+-=..+|+|+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999998876555555554
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.31 E-value=1.2e+02 Score=30.98 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred cchhHHHhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHhhccCCCCCCCcchH
Q 014967 212 HNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHE-----YNALDRFELDYRRKLEELDSLNLPRKGEGVT 286 (415)
Q Consensus 212 h~fdr~F~~L~~~~~~~~~~~k~ae~k~kkmerlV~~Ta~LY~E-----LeaL~~lEq~~rrk~~~~~~~~~~~~ge~l~ 286 (415)
++|..-+++|...........+++-.-++.|..+..-+-.--.. -+..++||+-+ ..+++.-....+. +.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i-~~lk~~V~~q~~~----ir 137 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRI-EILRRKVIEQVQR----IN 137 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHHhHH----HH
Q ss_pred HHHHHHHHHHHHHHhh
Q 014967 287 FLHSDLKQQRKLVRSL 302 (415)
Q Consensus 287 ~lqqkl~~QRq~Vk~L 302 (415)
.||.-|+.||.++++|
T Consensus 138 ~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHH
No 6
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=22.26 E-value=1.3e+02 Score=31.18 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=5.7
Q ss_pred hHHHHHHHHH
Q 014967 233 GEAETRMKEL 242 (415)
Q Consensus 233 k~ae~k~kkm 242 (415)
+|++..++..
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665443
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.06 E-value=20 Score=27.55 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccchhHH
Q 014967 186 ADKREEFDVFLREVIRFGNLCKDPQWHNLDRY 217 (415)
Q Consensus 186 AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~ 217 (415)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678888999999999999999999988665
No 8
>3ssq_A Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 2.20A {Thermosynechococcus elongatus}
Probab=21.10 E-value=51 Score=28.54 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=18.7
Q ss_pred cCcccccCCCCCceeccccCCceeeee-------hHHHHHHHHHHHhh
Q 014967 107 GSSMSSLNASSGFISGVTSKGNKISIL-------AFEVANTIAKGANL 147 (415)
Q Consensus 107 gssm~~l~~~~gf~sg~~~k~~kIgIL-------AFEVAntMsK~~~L 147 (415)
|||--.-.+++|.+-....-++.|||+ ++++|.+|.|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~M~~AiGiIE~~g~~~aI~AADam~KAA~V 49 (122)
T 3ssq_A 2 GSSHHHHHHSSGLVPRGSHMPIAVGMIETRGFPAVVEAADAMVKAARV 49 (122)
T ss_dssp -------------------CCCEEEEEEEESHHHHHHHHHHHHHHSSE
T ss_pred CccccccccccCCCCccchhhcCEEEEEecCHHHHHHHHHHHhhhCCc
Confidence 455444456666655544455679998 89999999999874
No 9
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=20.40 E-value=1.3e+02 Score=22.12 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014967 286 TFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGS 336 (415)
Q Consensus 286 ~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV~~I~~rI~~VFG~ 336 (415)
..++..|..|.-.||.||...-=....+..|..| ..+-......-|.
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~L----l~lK~~~~~~tg~ 49 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQL----LSLKAEYKEKTGQ 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH----HHHHHHHHHHhCC
Confidence 5688999999999999998665555667767665 4445555555564
No 10
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.90 E-value=1.3e+02 Score=23.95 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014967 283 EGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGS 336 (415)
Q Consensus 283 e~l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV~~I~~rI~~VFG~ 336 (415)
+.+..+..+|..|--.||.||...-=...++..|..| ..+-+.....-|.
T Consensus 13 ~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~L----l~LKa~l~~~tg~ 62 (79)
T 2djv_A 13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKL----LDLKKQLAVAEGK 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHH----HHHHHHHHHhcCC
Confidence 3578899999999999999996543333444555444 3344555666664
Done!