Query 014967
Match_columns 415
No_of_seqs 116 out of 141
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014967.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014967hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 31.1 48 0.0035 23.1 5.6 51 156-207 5-55 (66)
2 d1r6ta1 a.16.1.3 (A:7-60) N-te 23.9 46 0.0033 23.4 4.2 48 284-335 2-49 (54)
3 d1htaa_ a.22.1.2 (A:) Archaeal 20.9 41 0.003 23.4 3.5 52 151-207 4-55 (68)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 20.4 9.6 0.0007 29.0 -0.1 18 389-406 55-72 (89)
5 d2pjqa1 a.211.1.1 (A:1-215) Un 20.3 33 0.0024 29.1 3.4 66 182-247 118-206 (215)
6 d2bdea1 c.108.1.23 (A:2-459) C 20.0 87 0.0063 29.9 6.8 36 232-267 323-358 (458)
7 d1ku5a_ a.22.1.2 (A:) Archaeal 17.9 64 0.0047 22.3 4.0 44 163-207 11-54 (66)
8 d1zaka1 c.37.1.1 (A:3-127,A:15 16.9 1.6E+02 0.012 22.7 6.8 50 285-334 130-186 (189)
9 d1ojta2 c.3.1.5 (A:276-400) Di 15.4 30 0.0022 26.7 1.8 37 80-118 24-60 (125)
10 d1v59a2 c.3.1.5 (A:161-282) Di 14.5 26 0.0019 26.7 1.2 36 82-119 23-58 (122)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.10 E-value=48 Score=23.08 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=37.9
Q ss_pred HHHHhhhhccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014967 156 IQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (415)
Q Consensus 156 I~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (415)
+.|.|. ||++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|..
T Consensus 5 ~srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 5 PARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred hHHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345554 444333335899999999999999999999999999999877664
No 2
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.90 E-value=46 Score=23.39 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHhC
Q 014967 284 GVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFG 335 (415)
Q Consensus 284 ~l~~lqqkl~~QRq~Vk~LKk~SLWsrt~d~vVekLvriV~~I~~rI~~VFG 335 (415)
++.+|.++|..|=-.||.||..--=....|..|.+| .-+=+..+.+.|
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~L----L~LK~~yk~~tG 49 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKML----VSLKMSYKAAAG 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH----HHHHHHHHHhhC
Confidence 467899999999999999997644343445555544 333455555554
No 3
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=20.91 E-value=41 Score=23.38 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred cCHHHHHHHhhhhccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014967 151 LSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (415)
Q Consensus 151 LSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (415)
|.-..|.++ +++-|+.+ ||+|--+++.=++-+...+|-.-|..+++=++|..
T Consensus 4 LP~a~I~ri----~k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRI----IKNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHH----HHHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHH----HHHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 445556664 44567876 89999999999999999999999999999888876
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.44 E-value=9.6 Score=29.00 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccCchHHHHHHhhhccCC
Q 014967 389 NGLPATVKMNLRSRLQTV 406 (415)
Q Consensus 389 qmLP~sIRsaLRskLr~~ 406 (415)
+.+|++.|+.+.+|||.|
T Consensus 55 r~~p~s~R~~~~~klr~Y 72 (89)
T d1vcsa1 55 REIPPQSRGMYSNRMRSY 72 (89)
T ss_dssp TTSCTTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
No 5
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=20.32 E-value=33 Score=29.08 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHh---hccCCCcccc----------------chhHHHhhhhh--hccCCCCchhHHHHH
Q 014967 182 RIAAADKREEFDV--FLREVIRF---GNLCKDPQWH----------------NLDRYFSNLKS--EYLNHRQPRGEAETR 238 (415)
Q Consensus 182 ~LA~AEk~eeL~~--~A~~VaRl---G~rC~DP~lh----------------~fdr~F~~L~~--~~~~~~~~~k~ae~k 238 (415)
-+--||+++.|-. +|+..+-- |+.=.||.+. .++|+|++|-. +..--...++.|+.+
T Consensus 118 Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~R 197 (215)
T d2pjqa1 118 VVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHR 197 (215)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567899998886 56666633 3333465432 48888888732 221111235678888
Q ss_pred HHHHHHHHH
Q 014967 239 MKELTTLAQ 247 (415)
Q Consensus 239 ~kkmerlV~ 247 (415)
.+-|+.|++
T Consensus 198 ~~~m~~Fl~ 206 (215)
T d2pjqa1 198 TAVMHEFVD 206 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 6
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=20.05 E-value=87 Score=29.94 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014967 232 RGEAETRMKELTTLAQHTSELYHEYNALDRFELDYR 267 (415)
Q Consensus 232 ~k~ae~k~kkmerlV~~Ta~LY~ELeaL~~lEq~~r 267 (415)
-+|.+..++...+-......|-.=+..+.+++|.+.
T Consensus 323 i~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 358 (458)
T d2bdea1 323 VEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYV 358 (458)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 356776666554433333333222333445566553
No 7
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=17.89 E-value=64 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=37.1
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014967 163 VLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (415)
Q Consensus 163 vL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (415)
|++..|+. -||.|--+++.-|+-+..+.|-.-|..++.-++|..
T Consensus 11 I~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 11 LIRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455665 489999999999999999999999999998877764
No 8
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=16.91 E-value=1.6e+02 Score=22.70 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHhhhh--cccc-----hhcHHHHHHHHHHHHHHHHHHHHHHh
Q 014967 285 VTFLHSDLKQQRKLVRSLKK--KSLW-----SRNLEEVMEKFVEIAAYMHQAILEAF 334 (415)
Q Consensus 285 l~~lqqkl~~QRq~Vk~LKk--~SLW-----srt~d~vVekLvriV~~I~~rI~~VF 334 (415)
...+++++...+++++.|.+ ...| +++.|+|.+.+-.++-.|+.+....+
T Consensus 130 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~ 186 (189)
T d1zaka1 130 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 186 (189)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhc
Confidence 35667778888888777655 3566 68999999999999999988887766
No 9
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=15.45 E-value=30 Score=26.71 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=28.2
Q ss_pred cccccccccccccccccchhhHHhhhccCcccccCCCCC
Q 014967 80 KMTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSG 118 (415)
Q Consensus 80 k~~~~~~~lg~a~~~g~~kav~vldtlgssm~~l~~~~g 118 (415)
++++.--++| +|.+|+|-| +++-.+|+.+|=+..+..
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A-~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMG-TVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHH-HHHHHHTCEEEEECSSSS
T ss_pred ccCCeEEEEC-CCHHHHHHH-HHhhcCCCEEEEEEeecc
Confidence 3455567888 899999988 889999998877655543
No 10
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.46 E-value=26 Score=26.66 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=27.6
Q ss_pred cccccccccccccccchhhHHhhhccCcccccCCCCCc
Q 014967 82 TQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGF 119 (415)
Q Consensus 82 ~~~~~~lg~a~~~g~~kav~vldtlgssm~~l~~~~gf 119 (415)
++.--++| +|.+|++-| .+|-.+|+.+|=+....-+
T Consensus 23 p~~~vIiG-~G~ig~E~A-~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMG-SVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp CSEEEEEC-CSHHHHHHH-HHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEEC-CCchHHHHH-HHHHhhCcceeEEEecccc
Confidence 34557888 999999987 7888899998876665444
Done!