BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014968
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 209/331 (63%), Gaps = 38/331 (11%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++MFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
DWD LPP+KIK +A KP DWD+R IDDP KPE +WD+
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVG 315
G G W+P++I NP+YKG W P IDNP + D ++Y +G
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPE-YSPDANIYAYDSFAVLG 271
Query: 316 IEVWQVKAGSVYDNILICDDPAYAKQVVEEV 346
+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 272 LDLWQVKSGTIFDNFLITNDEAYAEEFGNET 302
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 199/383 (51%), Gaps = 64/383 (16%)
Query: 14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQT 66
+ E++F + FD G S W++S K+ + K+ GKW D P DKG+
Sbjct: 21 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKETKLPGDKGLVL 79
Query: 67 HTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGD 123
+ A+H+AISAK+ + F + L+VQY + F+ IECGG Y+KLLS +N +F
Sbjct: 80 MSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDK 139
Query: 124 APYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFI 173
PY++MFGPD CG K LH I ++ + +E + TDK TH YT I
Sbjct: 140 TPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLI 198
Query: 174 LRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKP 231
L PD S+ IL+D +SG++ D + P R+I+ +KP DWD+R I DP+AVKP
Sbjct: 199 LNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKP 258
Query: 232 EGY--------------------DSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA-- 269
+ + D P+ +PDP A+KP++WDED DG W+ P+I NP
Sbjct: 259 DDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCE 318
Query: 270 -----------------YKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIK 312
YKG W+P I NPNY+G WK I NP FE D + + + P
Sbjct: 319 SAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFE-DLEPFKMTPFS 377
Query: 313 YVGIEVWQVKAGSVYDNILICDD 335
+G+E+W + + +DN ++C D
Sbjct: 378 AIGLELWSMTSDIFFDNFIVCGD 400
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 135/189 (71%), Gaps = 6/189 (3%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++MFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPR 204
DWD LPP+
Sbjct: 184 DDWDFLPPK 192
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 302 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 346
D ++Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Query: 19 IFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
++F+E+F DGW SRW+ S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 12 VYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYAL 68
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SA FSNK +TLVVQ++++ EQ+I+CGGGY+KL ++Q GD+ Y++MFGPDIC
Sbjct: 69 SASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDIC 128
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 129 GPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 188
Query: 196 TDWDILP 202
DWD LP
Sbjct: 189 DDWDFLP 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 302 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 346
DP +Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 134/189 (70%), Gaps = 6/189 (3%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++ FGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHGDSEYNIXFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPR 204
DWD LPP+
Sbjct: 184 DDWDFLPPK 192
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 302 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 346
D ++Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Query: 204 RKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPP 263
+KIK +A KP DWD+R IDDP KPE +D P+ IPDP AKKP++WDE+ DG W+PP
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 264 KIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNP 296
I NP YKG W+P++I NP+YKG W P IDNP
Sbjct: 61 VIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNP 93
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 204 RKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPP 263
+KIK +A KP DWD+R IDDP KPE +D P+ IPDP AKKP++WDE+ DG W+PP
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 264 KIPNPAYKGPWRPK 277
I NP YKG W+P+
Sbjct: 61 VIQNPEYKGEWKPR 74
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 238 PKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKG 272
P+ IPDP AKKP++WDE+ DG W+PP I NP YKG
Sbjct: 3 PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKG 37
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 38
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 238 PKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA 269
PK IPDP A+KPD+W+ED DG W+ P+I NPA
Sbjct: 7 PKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 230 KPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289
+P+ D + E + KK ++W + + P +P + G R + +KGKWK
Sbjct: 119 EPQAVDFL--ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWK 176
Query: 290 IPY 292
P+
Sbjct: 177 TPF 179
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 230 KPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289
+P+ D + E + KK ++W + + P +P + G R + +KGKWK
Sbjct: 119 EPQAVDFL--ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWK 176
Query: 290 IPY 292
P+
Sbjct: 177 TPF 179
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 IKNPNYKGKWKIPYIDNPGIFEDDPDL 305
+KNP KG W +P NP F D+
Sbjct: 176 VKNPQVKGXWVVPVFSNPTGFTVTEDV 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,639,926
Number of Sequences: 62578
Number of extensions: 623696
Number of successful extensions: 1306
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 27
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)