Query 014968
Match_columns 415
No_of_seqs 238 out of 764
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 1E-135 3E-140 995.4 27.9 360 1-364 1-366 (406)
2 PF00262 Calreticulin: Calreti 100.0 1E-118 3E-123 900.4 13.3 312 19-332 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 7E-106 2E-110 822.2 24.9 333 21-356 43-439 (558)
4 KOG0674 Calreticulin [Posttran 100.0 1.4E-37 3E-42 305.8 10.5 275 12-328 18-340 (406)
5 PF00262 Calreticulin: Calreti 100.0 1.5E-30 3.2E-35 263.1 4.1 190 92-287 115-337 (367)
6 KOG0675 Calnexin [Posttranslat 99.9 4.2E-23 9.1E-28 213.4 12.2 199 93-297 159-393 (558)
7 PLN03161 Probable xyloglucan e 59.7 1.5E+02 0.0032 30.4 11.9 25 165-190 141-165 (291)
8 PF06439 DUF1080: Domain of Un 43.3 2.4E+02 0.0051 25.0 10.9 26 166-192 128-153 (185)
9 KOG0163 Myosin class VI heavy 30.3 59 0.0013 37.6 4.1 11 16-26 347-357 (1259)
10 PF10262 Rdx: Rdx family; Int 25.6 68 0.0015 25.6 2.7 22 170-191 35-56 (76)
11 KOG1996 mRNA splicing factor [ 23.6 1.3E+02 0.0029 31.2 4.9 9 328-336 83-91 (378)
12 PF07691 PA14: PA14 domain; I 22.8 69 0.0015 27.3 2.4 28 166-193 58-85 (145)
13 PF10669 Phage_Gp23: Protein g 20.3 1.6E+02 0.0034 26.0 4.0 18 342-359 33-51 (121)
14 PF07210 DUF1416: Protein of u 20.1 1.3E+02 0.0029 25.6 3.4 28 86-114 5-32 (85)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-135 Score=995.39 Aligned_cols=360 Identities=53% Similarity=1.037 Sum_probs=347.8
Q ss_pred ChhH--HHHHHHHhhccceeeeeecccC--CCcccCeeeCCcccCCCCCCcEEeecCcccCCCC-CceeeeCcccchhhh
Q 014968 1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75 (415)
Q Consensus 1 ~~~~--~~~~l~~~~~~~~~v~F~E~F~--~~w~~rWv~S~~~k~~~~~G~~~~~~gk~~g~~~-d~GL~~~~~ar~yaI 75 (415)
||.. ++|||+++++++++|||.|.|. ++|+.|||+|++++. .+|.|.+++|+|+|++. |+||||+++||||||
T Consensus 1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~ 78 (406)
T KOG0674|consen 1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI 78 (406)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence 4444 5677777888899999999995 579999999999864 68999999999999988 999999999999999
Q ss_pred hcCCCCCCCCCCceEEEEEEeeecccccCCceeEEecccccccccCCCCCceeeecCCccCCCCCeEEEEEeeCCCcccc
Q 014968 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI 155 (415)
Q Consensus 76 S~k~~~f~~k~k~LVvQYeVk~e~~idCGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~~~~~~i 155 (415)
|++|++|+|++++|||||+|||+|.|+|||||||||++++||.+|+++|||.|||||||||++|+|||+||+|+++||+|
T Consensus 79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli 158 (406)
T KOG0674|consen 79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI 158 (406)
T ss_pred ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 014968 156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235 (415)
Q Consensus 156 kk~~~~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd 235 (415)
++.++|++|++|||||||||||+||+|+|||+.+.+|||++||+++||++|.||.++||+||+++++|+||+++||++|+
T Consensus 159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe 238 (406)
T KOG0674|consen 159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE 238 (406)
T ss_pred ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCcCCCCCCCCCCCCcccCCCCCcccCCCcccccCceeee
Q 014968 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVG 315 (415)
Q Consensus 236 ~~p~~I~dp~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~~~~I~Np~~y~~d~~~~~~~~i~~iG 315 (415)
.|.+||||+|+||+|||+++||+|+||||+||.|+|+|+|++|+||+|||.|.+|+|.||+ |.+++.+|.+.+|++||
T Consensus 239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npe-y~~d~~ly~~~ni~~lg 316 (406)
T KOG0674|consen 239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPE-YPDDPELYHYENIGVLG 316 (406)
T ss_pred -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCc-CCCCcceeeecccceee
Confidence 7999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EeeEeecCCceeeeeEecCCHHHHHHHHHHhhcc-hhhhhhchHHHHHHH
Q 014968 316 IEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAEKVR 364 (415)
Q Consensus 316 ~ElW~~~~g~~fDNili~dd~~~A~~~~~~t~~~-~~~E~~~~e~~e~~~ 364 (415)
||||||+||+||||||||+|+++|++++++||+. +.+|++|++++++.+
T Consensus 317 ldLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~q 366 (406)
T KOG0674|consen 317 LDLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQ 366 (406)
T ss_pred eeEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhc
Confidence 9999999999999999999999999999999998 999999999876544
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.4e-118 Score=900.36 Aligned_cols=312 Identities=52% Similarity=1.010 Sum_probs=236.2
Q ss_pred eeeecccCCC--cccCeeeCCcccCC---CCCCcEEeecCcccC-CCCCceeeeCcccchhhhhcCC-CCCCCCCCceEE
Q 014968 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (415)
Q Consensus 19 v~F~E~F~~~--w~~rWv~S~~~k~~---~~~G~~~~~~gk~~g-~~~d~GL~~~~~ar~yaIS~k~-~~f~~k~k~LVv 91 (415)
|||+|+|+++ |.+|||+|++++++ .+.|+|.+++|++++ ..+|+||||+++|||||||++| +||++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999975 99999999999864 568999999997774 5679999999999999999999 589999999999
Q ss_pred EEEEeeecccccCCceeEEeccccccc-ccCCCCCceeeecCCccCCCCCeEEEEEeeC-------CCccccccCCcccC
Q 014968 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-------GQNYPIKKELECET 163 (415)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~~~d~~-~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~-------~~~~~ikk~~~~~~ 163 (415)
|||||||++|+|||||||||+...++. +|+++|||+||||||+|| .+++|||||||+ +.+|+.++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988887 999999999999999999 667799999774 23566677778899
Q ss_pred CCccceeeEEeCCCCceEEEEcceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC------
Q 014968 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (415)
Q Consensus 164 D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd------ 235 (415)
|++||||||||+|||||||+|||+++.+|||++||+ ++||++|+||+++||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCccCcCCcCCCCC
Q 014968 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (415)
Q Consensus 236 --------------~~p~~I~dp~a~kP~dWd~~~dG~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (415)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 689999999999999999999999999999999 999999999999999
Q ss_pred CCCCCCCcccCCCCCcccCCCcccccCceeeeEeeEeecCCceeeeeEe
Q 014968 284 YKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 332 (415)
Q Consensus 284 Ykg~W~~~~I~Np~~y~~d~~~~~~~~i~~iG~ElW~~~~g~~fDNili 332 (415)
|+|+|+||+|+||+ |++|++++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~-y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPD-YFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT---SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCc-ccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999 9999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-106 Score=822.22 Aligned_cols=333 Identities=41% Similarity=0.782 Sum_probs=298.2
Q ss_pred eecccCCC--cccCeeeCCcccCC------CCCCcEEeecCcccCCCCCceeeeCcccchhhhhcCC-CCCCCCCCceEE
Q 014968 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (415)
Q Consensus 21 F~E~F~~~--w~~rWv~S~~~k~~------~~~G~~~~~~gk~~g~~~d~GL~~~~~ar~yaIS~k~-~~f~~k~k~LVv 91 (415)
|.++|+.+ |. |||.|.++|++ .+.|.|.+..++-.+.++|+||++++.|||||||+.| .||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66678763 55 89999998863 2357777776665567889999999999999999999 789999999999
Q ss_pred EEEEeeecccccCCceeEEecc---cccccccCCCCCceeeecCCccCCCCCeEEEEEeeC-CCccc-----cccCCc--
Q 014968 92 QYSIRFEQDIECGGGYIKLLSA---YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-GQNYP-----IKKELE-- 160 (415)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~---~~d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~-~~~~~-----ikk~~~-- 160 (415)
||||+||.+++|||||||||+. ..++++|+++|||+||||||+|| .+++|||||||+ +.++. .+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 9999999999999999999998 36789999999999999999999 999999999995 34433 355553
Q ss_pred --ccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 014968 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (415)
Q Consensus 161 --~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd~ 236 (415)
..+|++||||||||+|||||+|||||++|..|||.+|+. ++||++|+||++.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 567999999999999999999999999999999999994 8999999999999999999999999999999999984
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCccCcCC
Q 014968 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLW-------------------KPPKIPNPAYKGPWRPK 277 (415)
Q Consensus 237 --------------------~p~~I~dp~a~kP~dWd~~~dG~W-------------------~~p~I~NP~ykG~W~p~ 277 (415)
+|.+|+||+|+||+|||+++||+| +||||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 688999999999999999877655 45677788899999999
Q ss_pred cCCCCCCCCCCCCcccCCCCCcccCCCcccccCceeeeEeeEeecCCceeeeeEecCCHHHHHHHHHHhhcc-hhhhhhc
Q 014968 278 RIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEG 356 (415)
Q Consensus 278 ~I~NP~Ykg~W~~~~I~Np~~y~~d~~~~~~~~i~~iG~ElW~~~~g~~fDNili~dd~~~A~~~~~~t~~~-~~~E~~~ 356 (415)
||.||+|+|+|+||+|+||+ |+++..++.+.+|.+||||||+|.++++|||||||++++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPd-yfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPD-YFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcc-cccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999 888888899999999999999999999999999999999999999999998 4555443
No 4
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=305.83 Aligned_cols=275 Identities=28% Similarity=0.447 Sum_probs=217.7
Q ss_pred hhccceeeee--ecccCCCcccCeeeC-CcccCCCCCCcEEeecCcccC-----CCCCceeeeCcccchhhhhcCCC---
Q 014968 12 FQISVSEIFF--EERFDDGWRSRWVIS-DWKRSEGKAGYFKHTAGKWHG-----DPDDKGIQTHTDARHYAISAKIP--- 80 (415)
Q Consensus 12 ~~~~~~~v~F--~E~F~~~w~~rWv~S-~~~k~~~~~G~~~~~~gk~~g-----~~~d~GL~~~~~ar~yaIS~k~~--- 80 (415)
.+.++++.-| .+.+..+|.++=..| ..+++...+|+|...+.+..| +...++| +|+|-.+|++-+
T Consensus 18 sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~----sa~F~~FsnK~kTLv 93 (406)
T KOG0674|consen 18 SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI----SAKFKPFSNKGKTLV 93 (406)
T ss_pred hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeee----ecccccccccCceEE
Confidence 4566788888 789998887554444 777777778998766554443 3456777 899999999986
Q ss_pred -CCCCCC-------CceEE---------------EEEEeeecccccCCceeEEecccccccccCCCCCceeeecCCccCC
Q 014968 81 -EFSNKN-------RTLVV---------------QYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGT 137 (415)
Q Consensus 81 -~f~~k~-------k~LVv---------------QYeVk~e~~idCGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~Cg~ 137 (415)
+|++++ +.+|. +|+|||+++| ||.|.-|++.+ + +|++ .++++-.-..|.
T Consensus 94 ~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDI-CG~~tkKVhvi-l---~ykg--~nhlikK~i~Ck- 165 (406)
T KOG0674|consen 94 IQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDI-CGFGTKKVHVI-L---NYKG--KNHLIKKDIRCK- 165 (406)
T ss_pred EEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcc-cCCCCceEEEE-E---eccc--ccchhccccccc-
Confidence 466663 55555 9999999999 99999999998 5 6777 588888999998
Q ss_pred CCCeEEE---EEeeCCCccccccCCc-ccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCCccccCCCCCC
Q 014968 138 QKKHLHV---ILSYQGQNYPIKKELE-CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKK 213 (415)
Q Consensus 138 ~~~kvH~---Il~~~~~~~~ikk~~~-~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~~~K 213 (415)
++..+|| ||| ++.+|.++.+.. .+++.|...|.|+....- ...+.+.++||+. ...|+||+|+|
T Consensus 166 ~D~~tHlYTlIlR-Pd~TYeVkIDn~~~esGsle~DWdll~~KKi---------kdP~a~KPedWDe--r~~I~DpeD~K 233 (406)
T KOG0674|consen 166 DDELTHLYTLILR-PDATYEVKIDNQQVESGSLEDDWDLLPPKKI---------KDPDAKKPEDWDE--REYIPDPEDKK 233 (406)
T ss_pred cCCcceeEEEEec-CCCeeEEEEcccccccCcccccccccccccc---------CCccccCcccchh--hccCCCccccC
Confidence 6666666 888 888999999875 689999999998654321 2456779999998 68999999999
Q ss_pred CCCCCCCcccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCcCCCCCCCCC
Q 014968 214 PADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGK 287 (415)
Q Consensus 214 P~DWdd~~~I~Dp~~~KPedWd~------~p~~I~dp~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~ 287 (415)
|+||+-+++||||+|+||+|||+ +++|||||.++ |+|+|..|.||+|||.|..|+|+||.|.
T Consensus 234 p~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi~np~yKg~w~hp~i~npey~-- 301 (406)
T KOG0674|consen 234 PQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQIKNPAYKGKWIHPEIDNPEYP-- 301 (406)
T ss_pred ccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccccCccccceeeccccCCCcCC--
Confidence 99999999999999999999997 59999999999 9999999999999999999999999998
Q ss_pred CCCcccCCCCCcccCCCcccccCc----eeeeEeeEeecCCceee
Q 014968 288 WKIPYIDNPGIFEDDPDLYVLKPI----KYVGIEVWQVKAGSVYD 328 (415)
Q Consensus 288 W~~~~I~Np~~y~~d~~~~~~~~i----~~iG~ElW~~~~g~~fD 328 (415)
+.|++|....--+.--.+ ++.-|+...++.+.-|.
T Consensus 302 ------~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA 340 (406)
T KOG0674|consen 302 ------DDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYA 340 (406)
T ss_pred ------CCcceeeecccceeeeeEEEeecceeecceEecCCHHHH
Confidence 788767643211111112 23346666666666554
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.96 E-value=1.5e-30 Score=263.06 Aligned_cols=190 Identities=34% Similarity=0.596 Sum_probs=94.3
Q ss_pred EEEEeeecccccCCceeEEecccc---cccccCCCCCceeeecCCccCCCCCeEEE---EEeeCCCccccccCCc-ccCC
Q 014968 92 QYSIRFEQDIECGGGYIKLLSAYV---NQKKFGGDAPYSLMFGPDICGTQKKHLHV---ILSYQGQNYPIKKELE-CETD 164 (415)
Q Consensus 92 QYeVk~e~~idCGGaYiKLl~~~~---d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~---Il~~~~~~~~ikk~~~-~~~D 164 (415)
.|+|||+.++ ||...- ++-+ + ++..- -...+++..-|-.|. .+..+|+ ||+ ++.+|+|+.+.. ...+
T Consensus 115 pY~IMFGPD~-CG~~~k-vHfI-~~~~nP~~~-~~~e~~l~~~p~~~~-~D~~tHlYTLii~-~dntyeI~IDg~~~~~G 188 (367)
T PF00262_consen 115 PYSIMFGPDK-CGSSNK-VHFI-FRHKNPITG-EIEEKHLKKPPISCF-TDKLTHLYTLIIR-PDNTYEIRIDGEVVKSG 188 (367)
T ss_dssp -ESEEEEEEE-ESTTEE-EEEE-EEEE-TTTE-ETTEEEE-SSSSB-H-HSSSEEEEEEEEE-TTTEEEEEETTEEEEEE
T ss_pred CceEEeCCcc-CCCCce-EEEE-EEecCCCCC-cccceecccCCcccc-cCCCcceEEEEEc-CCCeEEEEECCEEeecc
Confidence 6999999999 999776 7776 3 22211 112366777888895 6678888 787 666999988764 4555
Q ss_pred Cccceee--EE-----eCCCCc-eEEEEcce--eecCCCCCCCCCCCCCccccCCCCCCCCCCCC--CcccCCCCCCCCC
Q 014968 165 KLTHFYT--FI-----LRPDAS-YSILIDNR--ERDSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPE 232 (415)
Q Consensus 165 ~ltHlYT--LI-----l~pd~t-yeI~ID~~--~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd--~~~I~Dp~~~KPe 232 (415)
.|..-+. |. -.|+.. =+=.+|-+ ...+...++|||...|++|+||++.||++|++ +++|+||+|+||+
T Consensus 189 ~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~ 268 (367)
T PF00262_consen 189 SLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPE 268 (367)
T ss_dssp EHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-T
T ss_pred ccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCC
Confidence 6655565 21 122211 00001110 02333455555555555555555555555555 5899999999999
Q ss_pred CCCC------CCCCCCCCCCCCCC--CC------CCCCCCCCCCCCCCCCCCCccCcCCcCCCCCCCCC
Q 014968 233 GYDS------IPKEIPDPKAKKPD--NW------DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGK 287 (415)
Q Consensus 233 dWd~------~p~~I~dp~a~kP~--dW------d~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~ 287 (415)
|||+ ++++|+||.|..|. -| |..+.|+|+||||+||+|||+|+|++|+||+|...
T Consensus 269 dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d 337 (367)
T PF00262_consen 269 DWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFED 337 (367)
T ss_dssp T--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--SS
T ss_pred CCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCccccccccccccCCCcccCC
Confidence 9997 58999999888732 24 66889999999999999999999999999999964
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.2e-23 Score=213.42 Aligned_cols=199 Identities=28% Similarity=0.444 Sum_probs=129.4
Q ss_pred EEEeeecccccCCceeEEecccccccccCCC-CCceeeecCCc--cCCCCCeEEE---EEeeCCCccccccCCc-ccCCC
Q 014968 93 YSIRFEQDIECGGGYIKLLSAYVNQKKFGGD-APYSLMFGPDI--CGTQKKHLHV---ILSYQGQNYPIKKELE-CETDK 165 (415)
Q Consensus 93 YeVk~e~~idCGGaYiKLl~~~~d~~~f~~~-TpY~IMFGPD~--Cg~~~~kvH~---Il~~~~~~~~ikk~~~-~~~D~ 165 (415)
|++||+.+- || +-.|++-+-..-.-.+|. +-++.-+=|-. -.+.++++|+ |++ +.+++.|..+-. +..
T Consensus 159 y~ImFGPDK-CG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~-pd~sfeI~vDg~vv~~-- 233 (558)
T KOG0675|consen 159 YTIMFGPDK-CG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLK-PDNTFEIRVDGKVVYK-- 233 (558)
T ss_pred eEEEeCccc-cC-CcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEec-CCCeEEEEecCcEEEe--
Confidence 999999998 99 455666552111112221 11222222221 2335667776 666 456666654432 111
Q ss_pred ccceeeEE---e------CCCC-ceEEEEcc--eeecCCCCCCCCCCCCCccccCCCCCCCCCCCCC--cccCCCCCCCC
Q 014968 166 LTHFYTFI---L------RPDA-SYSILIDN--RERDSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKP 231 (415)
Q Consensus 166 ltHlYTLI---l------~pd~-tyeI~ID~--~~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~--~~I~Dp~~~KP 231 (415)
-++|+.++ . .|++ .++=+-+- -...+...++|||...|.+|+|+++.||++|.+. ++|+||+|+||
T Consensus 234 G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KP 313 (558)
T KOG0675|consen 234 GSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKP 313 (558)
T ss_pred cccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCC
Confidence 11222221 1 1111 11111110 1234556889999999999999999999999984 69999999999
Q ss_pred CCCCC------CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCccCcCCcCCCCCCCCCCCCcccCCC
Q 014968 232 EGYDS------IPKEIPDPKAKK---------PDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNP 296 (415)
Q Consensus 232 edWd~------~p~~I~dp~a~k---------P~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~~~~I~Np 296 (415)
+|||+ ++++|.||.|++ |-.=|..+.|.|.+|||.||+|+|.|+||.|+||+|...=+|- +-+|
T Consensus 314 edWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~-~~~p 392 (558)
T KOG0675|consen 314 EDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPF-TLTP 392 (558)
T ss_pred CCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcc-cccc
Confidence 99997 588898998874 2334778889999999999999999999999999999875553 4455
Q ss_pred C
Q 014968 297 G 297 (415)
Q Consensus 297 ~ 297 (415)
.
T Consensus 393 I 393 (558)
T KOG0675|consen 393 I 393 (558)
T ss_pred h
Confidence 5
No 7
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=59.69 E-value=1.5e+02 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.3
Q ss_pred CccceeeEEeCCCCceEEEEcceeec
Q 014968 165 KLTHFYTFILRPDASYSILIDNRERD 190 (415)
Q Consensus 165 ~ltHlYTLIl~pd~tyeI~ID~~~~~ 190 (415)
.--|.|++.=.|+. -..+|||+++.
T Consensus 141 ~dFHtYsI~Wtp~~-I~wyVDG~~iR 165 (291)
T PLN03161 141 ADFHNYTIHWNPSE-VVWYVDGTPIR 165 (291)
T ss_pred cCcEEEEEEEchhh-EEEEECCEEEE
Confidence 34599999988764 68899999886
No 8
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=43.27 E-value=2.4e+02 Score=25.03 Aligned_cols=26 Identities=0% Similarity=0.050 Sum_probs=18.0
Q ss_pred ccceeeEEeCCCCceEEEEcceeecCC
Q 014968 166 LTHFYTFILRPDASYSILIDNRERDSG 192 (415)
Q Consensus 166 ltHlYTLIl~pd~tyeI~ID~~~~~~G 192 (415)
.-|=+++++. .+++.|.|||+.|..-
T Consensus 128 ~W~~~~I~~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 128 EWNTVRIVVK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp SEEEEEEEEE-TTEEEEEETTEEEEEE
T ss_pred ceEEEEEEEE-CCEEEEEECCEEEEEE
Confidence 4444555554 6789999999987543
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=30.28 E-value=59 Score=37.61 Aligned_cols=11 Identities=45% Similarity=0.483 Sum_probs=6.3
Q ss_pred ceeeeeecccC
Q 014968 16 VSEIFFEERFD 26 (415)
Q Consensus 16 ~~~v~F~E~F~ 26 (415)
.+.+-|.|.-+
T Consensus 347 LGNieFEE~~d 357 (1259)
T KOG0163|consen 347 LGNIEFEEIPD 357 (1259)
T ss_pred ccccchhcccC
Confidence 45666666554
No 10
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=25.62 E-value=68 Score=25.60 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=16.9
Q ss_pred eeEEeCCCCceEEEEcceeecC
Q 014968 170 YTFILRPDASYSILIDNRERDS 191 (415)
Q Consensus 170 YTLIl~pd~tyeI~ID~~~~~~ 191 (415)
.+|+....+.|||.+||+.+-|
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 3566677899999999998764
No 11
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.65 E-value=1.3e+02 Score=31.19 Aligned_cols=9 Identities=22% Similarity=0.180 Sum_probs=4.2
Q ss_pred eeeEecCCH
Q 014968 328 DNILICDDP 336 (415)
Q Consensus 328 DNili~dd~ 336 (415)
|||+++-.-
T Consensus 83 dpi~~g~~a 91 (378)
T KOG1996|consen 83 DPISFGPKA 91 (378)
T ss_pred Ccccccccc
Confidence 555544433
No 12
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.77 E-value=69 Score=27.29 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=23.1
Q ss_pred ccceeeEEeCCCCceEEEEcceeecCCC
Q 014968 166 LTHFYTFILRPDASYSILIDNRERDSGS 193 (415)
Q Consensus 166 ltHlYTLIl~pd~tyeI~ID~~~~~~Gs 193 (415)
.+-.|||.+..++.+++.|||+.+....
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEEecccEEEEECCEEEEcCC
Confidence 4567999999999999999999875443
No 13
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.26 E-value=1.6e+02 Score=25.96 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHHhhcc-hhhhhhchHH
Q 014968 342 VVEEVLSN-REIEKEGFEE 359 (415)
Q Consensus 342 ~~~~t~~~-~~~E~~~~e~ 359 (415)
++..-|-. +..-.+|.|+
T Consensus 33 i~~~IW~~~r~~r~~MKEE 51 (121)
T PF10669_consen 33 ITKSIWHDSRQVRIRMKEE 51 (121)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 34555665 4433444443
No 14
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=20.06 E-value=1.3e+02 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCceEEEEEEeeecccccCCceeEEeccc
Q 014968 86 NRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (415)
Q Consensus 86 ~k~LVvQYeVk~e~~idCGGaYiKLl~~~ 114 (415)
.|..|||=.|. ..+--.||||+.||...
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 57789999999 66666899999999873
Done!