Query 014969
Match_columns 415
No_of_seqs 149 out of 236
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 1.5E-35 3.2E-40 255.1 12.2 110 299-410 2-111 (111)
2 PF03763 Remorin_C: Remorin, C 97.7 0.00037 8.1E-09 60.8 10.2 79 322-400 3-81 (111)
3 PRK09174 F0F1 ATP synthase sub 88.8 6.3 0.00014 37.7 11.5 45 338-382 102-146 (204)
4 PRK13454 F0F1 ATP synthase sub 83.6 8.4 0.00018 35.9 9.1 32 351-382 115-146 (181)
5 CHL00118 atpG ATP synthase CF0 77.8 43 0.00092 30.3 11.4 27 345-371 78-104 (156)
6 PRK13455 F0F1 ATP synthase sub 75.6 22 0.00047 32.9 9.1 37 350-386 110-146 (184)
7 PRK06569 F0F1 ATP synthase sub 75.6 52 0.0011 30.7 11.5 63 319-382 41-103 (155)
8 cd03404 Band_7_HflK Band_7_Hfl 75.5 16 0.00034 35.2 8.5 35 364-398 206-240 (266)
9 PRK14475 F0F1 ATP synthase sub 73.9 27 0.00058 32.0 9.1 26 361-386 104-129 (167)
10 PF10376 Mei5: Double-strand r 73.2 16 0.00035 35.7 7.9 57 325-382 130-186 (221)
11 KOG4661 Hsp27-ERE-TATA-binding 73.2 11 0.00024 42.0 7.4 69 312-380 624-705 (940)
12 PRK07352 F0F1 ATP synthase sub 70.1 83 0.0018 28.9 11.5 24 359-382 111-134 (174)
13 PF14738 PaaSYMP: Solute carri 69.8 57 0.0012 30.4 10.3 70 321-390 74-144 (154)
14 PRK00409 recombination and DNA 69.4 44 0.00095 38.1 11.3 20 355-374 569-588 (782)
15 CHL00019 atpF ATP synthase CF0 69.4 84 0.0018 29.1 11.5 20 367-386 124-143 (184)
16 PRK00247 putative inner membra 68.7 35 0.00075 36.6 9.8 7 304-310 315-321 (429)
17 PRK06231 F0F1 ATP synthase sub 68.6 37 0.0008 32.4 9.1 24 364-387 145-168 (205)
18 COG5269 ZUO1 Ribosome-associat 68.6 22 0.00048 36.6 7.9 62 320-381 237-298 (379)
19 PF10211 Ax_dynein_light: Axon 67.9 80 0.0017 29.9 11.1 59 338-397 124-182 (189)
20 PRK07353 F0F1 ATP synthase sub 67.8 49 0.0011 28.9 9.1 8 347-354 63-70 (140)
21 PRK13453 F0F1 ATP synthase sub 66.6 1.1E+02 0.0023 28.3 12.2 41 347-387 98-138 (173)
22 PRK13454 F0F1 ATP synthase sub 66.6 1.1E+02 0.0024 28.5 11.9 47 338-384 80-126 (181)
23 PRK13460 F0F1 ATP synthase sub 66.1 49 0.0011 30.4 9.1 65 326-390 75-139 (173)
24 TIGR01069 mutS2 MutS2 family p 66.1 56 0.0012 37.2 11.3 14 311-324 510-523 (771)
25 PRK13460 F0F1 ATP synthase sub 65.9 1.1E+02 0.0024 28.1 12.2 39 341-379 68-106 (173)
26 PF00430 ATP-synt_B: ATP synth 65.3 38 0.00083 28.8 7.8 13 360-372 92-104 (132)
27 PRK08476 F0F1 ATP synthase sub 65.1 1E+02 0.0023 27.6 12.1 15 365-379 94-108 (141)
28 PRK13428 F0F1 ATP synthase sub 64.9 77 0.0017 33.8 11.5 27 361-387 95-121 (445)
29 PF05103 DivIVA: DivIVA protei 64.8 3.7 8E-05 35.2 1.5 64 334-398 39-102 (131)
30 PF09755 DUF2046: Uncharacteri 63.8 77 0.0017 32.8 10.8 72 304-376 84-155 (310)
31 PRK13455 F0F1 ATP synthase sub 63.8 1.2E+02 0.0027 28.0 12.2 45 337-381 75-119 (184)
32 PRK08476 F0F1 ATP synthase sub 63.3 1.1E+02 0.0025 27.3 11.3 49 338-386 56-104 (141)
33 PRK00409 recombination and DNA 62.9 90 0.0019 35.7 12.2 39 338-376 541-579 (782)
34 PRK14474 F0F1 ATP synthase sub 62.4 66 0.0014 31.7 9.8 6 309-314 45-50 (250)
35 COG0711 AtpF F0F1-type ATP syn 62.3 63 0.0014 29.7 9.1 45 338-382 55-99 (161)
36 PRK12704 phosphodiesterase; Pr 61.7 89 0.0019 34.1 11.4 8 325-332 81-88 (520)
37 KOG0163 Myosin class VI heavy 60.9 76 0.0016 37.0 10.8 26 348-373 949-974 (1259)
38 TIGR01144 ATP_synt_b ATP synth 59.9 83 0.0018 27.7 9.1 35 353-387 81-115 (147)
39 PRK09174 F0F1 ATP synthase sub 59.9 1.7E+02 0.0036 28.2 12.2 46 347-392 133-178 (204)
40 PRK01194 V-type ATP synthase s 59.0 1.4E+02 0.0029 28.1 10.8 33 338-370 28-60 (185)
41 KOG2412 Nuclear-export-signal 58.7 69 0.0015 35.6 9.9 55 332-386 219-274 (591)
42 PRK06569 F0F1 ATP synthase sub 58.6 1.1E+02 0.0024 28.7 9.9 28 350-377 60-87 (155)
43 PF04012 PspA_IM30: PspA/IM30 57.9 1.4E+02 0.0029 28.2 10.8 23 312-334 51-73 (221)
44 PRK10930 FtsH protease regulat 57.9 48 0.001 35.3 8.5 57 342-398 253-309 (419)
45 KOG1103 Predicted coiled-coil 56.7 75 0.0016 33.9 9.4 48 329-376 155-212 (561)
46 KOG0577 Serine/threonine prote 56.4 56 0.0012 37.3 8.9 83 305-387 814-900 (948)
47 PRK13453 F0F1 ATP synthase sub 56.3 1.7E+02 0.0036 27.0 11.4 11 347-357 76-86 (173)
48 PF06034 DUF919: Nucleopolyhed 56.1 31 0.00067 27.8 5.2 45 320-364 15-61 (62)
49 cd07663 BAR_SNX5 The Bin/Amphi 55.6 1.2E+02 0.0026 29.8 10.2 28 308-337 134-161 (218)
50 PTZ00121 MAEBL; Provisional 54.7 67 0.0015 39.7 9.6 19 329-347 1599-1617(2084)
51 KOG1962 B-cell receptor-associ 54.7 71 0.0015 31.5 8.4 39 336-375 153-191 (216)
52 PRK13428 F0F1 ATP synthase sub 54.5 1.9E+02 0.004 30.9 12.2 23 348-370 104-126 (445)
53 TIGR01069 mutS2 MutS2 family p 54.0 1.5E+02 0.0034 33.8 12.1 7 29-35 285-291 (771)
54 CHL00118 atpG ATP synthase CF0 53.9 1.7E+02 0.0037 26.4 12.2 45 346-390 101-145 (156)
55 PRK14471 F0F1 ATP synthase sub 53.3 1.7E+02 0.0038 26.4 12.2 24 360-383 101-124 (164)
56 PRK06568 F0F1 ATP synthase sub 52.9 88 0.0019 29.1 8.3 15 349-363 82-96 (154)
57 KOG4552 Vitamin-D-receptor int 52.7 82 0.0018 31.4 8.5 37 335-372 68-104 (272)
58 KOG4326 Mitochondrial F1F0-ATP 52.5 52 0.0011 27.7 6.0 26 318-343 31-56 (81)
59 PTZ00121 MAEBL; Provisional 52.4 71 0.0015 39.5 9.3 8 275-282 1262-1269(2084)
60 PRK11637 AmiB activator; Provi 51.6 2.2E+02 0.0048 29.7 12.0 38 337-375 71-108 (428)
61 KOG3540 Beta amyloid precursor 50.8 75 0.0016 35.1 8.5 86 312-400 285-388 (615)
62 KOG3654 Uncharacterized CH dom 50.7 29 0.00063 38.3 5.5 42 331-383 397-440 (708)
63 PF11559 ADIP: Afadin- and alp 50.7 52 0.0011 29.4 6.4 26 327-352 119-144 (151)
64 PF09731 Mitofilin: Mitochondr 50.4 2.3E+02 0.0049 30.7 12.3 20 346-365 312-331 (582)
65 KOG0163 Myosin class VI heavy 50.2 1.3E+02 0.0029 35.1 10.6 8 212-219 661-668 (1259)
66 KOG4848 Extracellular matrix-a 49.6 2E+02 0.0043 28.4 10.3 72 309-385 132-213 (225)
67 PRK14472 F0F1 ATP synthase sub 49.6 2.1E+02 0.0046 26.2 12.2 29 354-382 105-133 (175)
68 PRK14475 F0F1 ATP synthase sub 49.5 2.1E+02 0.0045 26.2 12.2 10 348-357 69-78 (167)
69 PF05529 Bap31: B-cell recepto 49.4 1.4E+02 0.003 27.8 9.2 63 319-382 125-187 (192)
70 PF05957 DUF883: Bacterial pro 48.3 1.3E+02 0.0028 24.9 8.0 41 339-379 3-43 (94)
71 PF00430 ATP-synt_B: ATP synth 48.0 1.7E+02 0.0037 24.8 10.1 19 344-362 54-72 (132)
72 PF12528 DUF3728: Prepilin pep 47.7 12 0.00026 31.3 1.7 44 33-83 39-82 (84)
73 PRK14473 F0F1 ATP synthase sub 47.3 2.2E+02 0.0047 25.8 11.4 23 364-386 105-127 (164)
74 PF06409 NPIP: Nuclear pore co 47.1 88 0.0019 31.5 7.8 71 299-370 79-159 (265)
75 PF11875 DUF3395: Domain of un 46.2 56 0.0012 30.0 5.9 37 350-386 11-47 (151)
76 TIGR00570 cdk7 CDK-activating 45.0 1.1E+02 0.0023 31.8 8.3 21 300-320 116-136 (309)
77 PF12128 DUF3584: Protein of u 43.8 2.6E+02 0.0056 33.5 12.3 39 314-352 658-696 (1201)
78 cd03404 Band_7_HflK Band_7_Hfl 43.2 2.9E+02 0.0064 26.5 10.7 15 367-381 222-236 (266)
79 PRK10698 phage shock protein P 42.7 3.3E+02 0.0071 26.4 11.4 22 313-334 53-74 (222)
80 PRK07353 F0F1 ATP synthase sub 42.5 2.3E+02 0.005 24.7 12.2 44 346-389 84-127 (140)
81 PRK05759 F0F1 ATP synthase sub 42.2 2.5E+02 0.0053 24.9 12.2 36 351-386 88-123 (156)
82 KOG2129 Uncharacterized conser 41.8 32 0.0007 37.2 4.1 28 345-372 147-174 (552)
83 KOG0996 Structural maintenance 41.0 2.7E+02 0.0059 33.9 11.6 64 342-409 557-621 (1293)
84 COG4942 Membrane-bound metallo 40.9 3.9E+02 0.0084 28.9 11.9 43 343-386 219-261 (420)
85 PRK02292 V-type ATP synthase s 40.5 1.5E+02 0.0033 27.3 8.0 29 342-370 32-60 (188)
86 PF10376 Mei5: Double-strand r 39.9 1.3E+02 0.0028 29.6 7.6 48 312-359 138-185 (221)
87 PF11554 DUF3232: Protein of u 39.9 91 0.002 29.2 6.2 59 315-376 51-109 (152)
88 KOG2072 Translation initiation 39.9 3.6E+02 0.0077 31.9 12.0 13 221-233 517-529 (988)
89 KOG4055 Uncharacterized conser 39.8 93 0.002 30.4 6.5 24 360-383 111-134 (213)
90 COG3064 TolA Membrane protein 39.8 2.1E+02 0.0046 30.2 9.4 21 304-324 152-172 (387)
91 PF10211 Ax_dynein_light: Axon 39.4 3.4E+02 0.0074 25.7 11.7 86 315-401 94-179 (189)
92 PF09731 Mitofilin: Mitochondr 38.1 4.8E+02 0.01 28.3 12.4 24 346-369 331-354 (582)
93 KOG0742 AAA+-type ATPase [Post 38.1 4.3E+02 0.0093 29.4 11.7 36 346-381 164-199 (630)
94 PF10147 CR6_interact: Growth 37.8 3.9E+02 0.0084 26.4 10.6 68 315-384 127-201 (217)
95 KOG4715 SWI/SNF-related matrix 36.9 3.7E+02 0.0081 28.5 10.6 50 318-368 220-272 (410)
96 PTZ00491 major vault protein; 36.7 2.1E+02 0.0045 33.5 9.7 48 301-348 703-750 (850)
97 TIGR03185 DNA_S_dndD DNA sulfu 36.5 4.2E+02 0.0092 29.3 11.9 12 133-144 152-163 (650)
98 TIGR03321 alt_F1F0_F0_B altern 36.5 4.1E+02 0.0089 25.8 12.2 15 350-364 110-124 (246)
99 PRK08404 V-type ATP synthase s 36.3 2.8E+02 0.0061 23.9 10.7 39 341-379 54-92 (103)
100 PF12925 APP_E2: E2 domain of 36.1 1.9E+02 0.0041 28.1 8.0 64 322-387 41-105 (193)
101 TIGR00570 cdk7 CDK-activating 35.6 2.7E+02 0.0059 28.9 9.5 13 325-337 119-131 (309)
102 COG1390 NtpE Archaeal/vacuolar 35.5 3.8E+02 0.0082 25.7 10.0 8 391-398 91-98 (194)
103 PF02841 GBP_C: Guanylate-bind 35.5 4.6E+02 0.01 26.1 11.9 47 317-364 209-255 (297)
104 KOG3859 Septins (P-loop GTPase 35.4 4.4E+02 0.0094 27.9 10.8 41 312-352 326-366 (406)
105 PF12127 YdfA_immunity: SigmaW 35.4 52 0.0011 33.9 4.3 27 334-360 229-255 (316)
106 PF07352 Phage_Mu_Gam: Bacteri 35.1 99 0.0021 27.9 5.7 38 313-350 18-55 (149)
107 PF12777 MT: Microtubule-bindi 35.1 1.9E+02 0.0041 29.6 8.3 42 335-377 16-57 (344)
108 PF06936 Selenoprotein_S: Sele 34.9 2.1E+02 0.0046 27.5 8.2 8 397-404 161-168 (190)
109 cd07662 BAR_SNX6 The Bin/Amphi 34.5 3.1E+02 0.0067 27.2 9.3 62 307-371 133-201 (218)
110 COG4942 Membrane-bound metallo 34.5 5.8E+02 0.013 27.7 12.0 24 315-338 174-197 (420)
111 KOG3756 Pinin (desmosome-assoc 34.3 4.9E+02 0.011 27.4 11.0 13 318-330 152-164 (340)
112 PF10602 RPN7: 26S proteasome 33.4 1.9E+02 0.0041 26.8 7.5 28 329-356 2-29 (177)
113 PRK08404 V-type ATP synthase s 33.2 2.4E+02 0.0052 24.3 7.5 38 355-392 46-83 (103)
114 COG2433 Uncharacterized conser 33.2 3.7E+02 0.008 30.6 10.6 69 312-381 422-499 (652)
115 PHA02562 46 endonuclease subun 32.9 6.2E+02 0.013 26.8 12.3 96 311-413 180-291 (562)
116 PF03938 OmpH: Outer membrane 32.8 3.5E+02 0.0075 23.8 9.2 32 359-390 83-114 (158)
117 PRK13665 hypothetical protein; 32.7 70 0.0015 32.9 4.7 27 334-360 234-260 (316)
118 TIGR02977 phageshock_pspA phag 32.1 4.6E+02 0.0099 25.1 12.5 65 314-379 54-136 (219)
119 PTZ00491 major vault protein; 31.8 3.5E+02 0.0075 31.8 10.4 56 320-375 700-763 (850)
120 cd07664 BAR_SNX2 The Bin/Amphi 31.6 3.9E+02 0.0084 26.3 9.6 23 358-380 186-209 (234)
121 COG1579 Zn-ribbon protein, pos 31.6 5.2E+02 0.011 25.9 10.5 43 360-402 114-159 (239)
122 PF07946 DUF1682: Protein of u 31.3 1.9E+02 0.0042 29.3 7.7 7 369-375 307-313 (321)
123 PRK14161 heat shock protein Gr 31.0 3E+02 0.0066 26.1 8.4 29 340-368 50-78 (178)
124 PRK13665 hypothetical protein; 31.0 1.5E+02 0.0032 30.7 6.6 50 332-384 241-292 (316)
125 KOG2668 Flotillins [Intracellu 30.2 4.6E+02 0.0099 28.2 10.2 71 312-382 240-314 (428)
126 PF08232 Striatin: Striatin fa 29.9 2E+02 0.0042 26.0 6.7 49 308-358 22-70 (134)
127 KOG4364 Chromatin assembly fac 29.8 3.3E+02 0.0071 31.5 9.5 86 310-399 290-377 (811)
128 PF06428 Sec2p: GDP/GTP exchan 28.9 3.6E+02 0.0077 23.5 7.8 39 332-370 6-44 (100)
129 PF11875 DUF3395: Domain of un 28.7 2.5E+02 0.0055 25.7 7.3 24 338-361 10-33 (151)
130 PF07798 DUF1640: Protein of u 28.7 4.8E+02 0.01 24.2 11.8 44 319-362 58-101 (177)
131 PF05529 Bap31: B-cell recepto 28.6 2.8E+02 0.006 25.7 7.7 10 320-329 119-128 (192)
132 PRK03963 V-type ATP synthase s 28.5 1.5E+02 0.0033 27.4 5.9 21 342-362 22-42 (198)
133 KOG2962 Prohibitin-related mem 28.4 5.1E+02 0.011 26.5 9.7 39 321-359 209-247 (322)
134 PRK11029 FtsH protease regulat 28.3 1.3E+02 0.0028 31.1 5.9 21 366-386 262-282 (334)
135 cd07663 BAR_SNX5 The Bin/Amphi 28.0 6E+02 0.013 25.1 10.3 39 322-360 126-165 (218)
136 PRK01005 V-type ATP synthase s 27.9 5.3E+02 0.012 25.0 9.6 9 365-373 55-63 (207)
137 COG0711 AtpF F0F1-type ATP syn 27.8 3.5E+02 0.0076 24.8 8.1 16 325-340 69-84 (161)
138 PF02388 FemAB: FemAB family; 27.6 2.5E+02 0.0055 29.3 8.0 20 335-354 250-269 (406)
139 cd07665 BAR_SNX1 The Bin/Amphi 27.5 5E+02 0.011 25.7 9.5 47 335-381 160-210 (234)
140 PF09726 Macoilin: Transmembra 27.1 8.6E+02 0.019 27.9 12.4 115 298-415 517-673 (697)
141 PRK10332 hypothetical protein; 27.1 42 0.00092 29.7 1.9 43 33-83 62-104 (107)
142 KOG0338 ATP-dependent RNA heli 27.0 2.4E+02 0.0053 31.8 7.9 52 301-354 551-607 (691)
143 PRK02292 V-type ATP synthase s 26.2 5.2E+02 0.011 23.8 11.1 18 313-330 17-34 (188)
144 PF07767 Nop53: Nop53 (60S rib 25.9 4.6E+02 0.0099 27.2 9.4 78 322-403 273-350 (387)
145 PF07888 CALCOCO1: Calcium bin 25.7 9.8E+02 0.021 26.9 12.2 51 317-367 218-270 (546)
146 PF01086 Clathrin_lg_ch: Clath 25.7 1.3E+02 0.0029 29.2 5.2 50 305-354 113-162 (225)
147 PF05266 DUF724: Protein of un 25.6 6E+02 0.013 24.3 10.2 36 320-356 111-146 (190)
148 PF05890 Ebp2: Eukaryotic rRNA 25.5 4.4E+02 0.0095 26.7 8.9 62 312-373 118-180 (271)
149 PRK01558 V-type ATP synthase s 25.3 2.7E+02 0.0059 26.3 7.1 8 366-373 51-58 (198)
150 KOG0742 AAA+-type ATPase [Post 25.2 8.7E+02 0.019 27.1 11.4 9 317-325 151-159 (630)
151 PF04888 SseC: Secretion syste 25.0 2.2E+02 0.0048 28.2 6.7 54 341-401 3-56 (306)
152 KOG0718 Molecular chaperone (D 24.4 1.9E+02 0.0041 32.0 6.4 27 331-357 400-426 (546)
153 KOG0980 Actin-binding protein 24.4 7.4E+02 0.016 29.6 11.3 34 355-388 472-505 (980)
154 COG4420 Predicted membrane pro 24.4 2.9E+02 0.0064 26.9 7.1 60 322-381 114-180 (191)
155 cd07656 F-BAR_srGAP The F-BAR 24.0 5.5E+02 0.012 25.3 9.1 13 339-351 150-162 (241)
156 KOG2357 Uncharacterized conser 24.0 1.7E+02 0.0036 31.7 5.9 25 345-369 363-387 (440)
157 PF05178 Kri1: KRI1-like famil 23.8 1.7E+02 0.0037 25.4 5.0 32 343-374 8-39 (101)
158 COG4487 Uncharacterized protei 23.6 8.6E+02 0.019 26.6 11.0 25 348-372 121-145 (438)
159 PRK14144 heat shock protein Gr 23.4 4.8E+02 0.011 25.4 8.4 64 305-368 38-104 (199)
160 KOG2341 TATA box binding prote 23.4 2.5E+02 0.0054 31.5 7.2 86 313-398 414-502 (563)
161 KOG1691 emp24/gp25L/p24 family 23.3 2.4E+02 0.0052 27.9 6.4 34 339-380 139-172 (210)
162 PF05278 PEARLI-4: Arabidopsis 23.1 8.2E+02 0.018 25.0 10.5 58 340-399 192-249 (269)
163 COG4864 Uncharacterized protei 23.1 1.9E+02 0.0042 29.3 5.8 48 334-385 233-280 (328)
164 PF10940 DUF2618: Protein of u 22.9 27 0.00058 25.9 -0.1 23 393-415 5-29 (40)
165 PRK09173 F0F1 ATP synthase sub 22.9 5.6E+02 0.012 23.0 12.1 20 368-387 103-122 (159)
166 PRK14158 heat shock protein Gr 22.6 5.1E+02 0.011 25.0 8.4 56 313-368 41-99 (194)
167 PRK11029 FtsH protease regulat 22.6 5E+02 0.011 26.9 8.9 16 366-381 271-286 (334)
168 COG2825 HlpA Outer membrane pr 22.2 6.6E+02 0.014 23.6 11.5 16 371-386 105-120 (170)
169 PF14235 DUF4337: Domain of un 22.1 4.6E+02 0.0099 24.4 7.7 21 336-356 68-88 (157)
170 PF12210 Hrs_helical: Hepatocy 21.9 3.9E+02 0.0084 23.5 6.7 45 345-394 50-94 (96)
171 PF05266 DUF724: Protein of un 21.8 6.2E+02 0.014 24.2 8.8 16 338-353 107-122 (190)
172 KOG0612 Rho-associated, coiled 21.8 6.9E+02 0.015 30.8 10.6 67 330-402 504-570 (1317)
173 PF05667 DUF812: Protein of un 21.8 1.1E+03 0.025 26.4 12.0 22 341-362 408-429 (594)
174 PF06295 DUF1043: Protein of u 21.7 3.7E+02 0.008 23.9 6.8 43 334-376 25-67 (128)
175 COG2433 Uncharacterized conser 21.7 4.7E+02 0.01 29.8 8.9 40 328-368 468-507 (652)
176 KOG1029 Endocytic adaptor prot 21.7 6.6E+02 0.014 29.8 10.1 75 318-393 342-419 (1118)
177 cd07610 FCH_F-BAR The Extended 21.4 6E+02 0.013 22.8 9.8 44 328-372 114-157 (191)
178 KOG3335 Predicted coiled-coil 21.3 2.4E+02 0.0051 27.3 5.8 33 337-370 102-134 (181)
179 TIGR03185 DNA_S_dndD DNA sulfu 21.3 7.6E+02 0.016 27.4 10.5 6 89-94 38-43 (650)
180 TIGR02926 AhaH ATP synthase ar 21.1 4.6E+02 0.01 21.4 7.5 21 362-382 49-69 (85)
181 COG1842 PspA Phage shock prote 20.9 8.1E+02 0.017 24.1 10.2 88 314-401 54-159 (225)
182 PRK14139 heat shock protein Gr 20.8 6.3E+02 0.014 24.3 8.5 57 311-367 31-90 (185)
183 PF15392 Joubert: Joubert synd 20.7 2.5E+02 0.0054 29.5 6.1 68 320-390 51-129 (329)
184 KOG2077 JNK/SAPK-associated pr 20.6 4.4E+02 0.0095 30.1 8.3 24 337-360 353-376 (832)
185 PRK11448 hsdR type I restricti 20.6 3.8E+02 0.0082 32.3 8.5 43 316-359 167-209 (1123)
186 TIGR01554 major_cap_HK97 phage 20.5 6.1E+02 0.013 25.9 9.0 19 334-352 27-45 (378)
187 cd07671 F-BAR_PSTPIP1 The F-BA 20.4 8.2E+02 0.018 24.0 9.6 70 309-378 96-175 (242)
188 PF07352 Phage_Mu_Gam: Bacteri 20.4 6.1E+02 0.013 22.8 8.1 37 337-373 13-49 (149)
189 PRK14163 heat shock protein Gr 20.4 5.5E+02 0.012 25.3 8.2 51 318-368 46-99 (214)
190 PRK11677 hypothetical protein; 20.4 4E+02 0.0087 24.4 6.8 43 334-376 29-71 (134)
191 PF04568 IATP: Mitochondrial A 20.3 5.9E+02 0.013 22.3 7.7 11 306-316 51-61 (100)
192 PF12127 YdfA_immunity: SigmaW 20.3 2.1E+02 0.0045 29.7 5.4 15 333-347 237-251 (316)
193 PF04420 CHD5: CHD5-like prote 20.2 1.4E+02 0.0029 27.6 3.9 22 334-355 66-87 (161)
194 cd03407 Band_7_4 A subgroup of 20.1 3.5E+02 0.0076 26.3 6.9 10 221-230 93-102 (262)
195 cd07619 BAR_Rich2 The Bin/Amph 20.1 9E+02 0.019 24.3 11.5 76 338-413 166-244 (248)
196 KOG2962 Prohibitin-related mem 20.1 7.1E+02 0.015 25.5 9.0 7 311-317 187-193 (322)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=1.5e-35 Score=255.07 Aligned_cols=110 Identities=42% Similarity=0.593 Sum_probs=106.1
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 299 QNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRIS 378 (415)
Q Consensus 299 k~~~eaka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~ 378 (415)
++.+++++++||++|++|+.+||+|++++|++|||+||+|||++|+|+|++||+||++++|||+|+|+.||++||++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHHhhccCCCCCCcccc
Q 014969 379 ISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCF 410 (415)
Q Consensus 379 AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF 410 (415)
+++++++++++++++|++||+||++|+ .||
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~--~~f 111 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPS--KCF 111 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCc--ccC
Confidence 999999999999999999999999994 454
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=97.69 E-value=0.00037 Score=60.79 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhcc
Q 014969 322 QREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKH 400 (415)
Q Consensus 322 qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~T 400 (415)
+..+++|.+||..+++|+....++.|.+|.-+=..--.|..-+|..++.+.|.+|+.+.++-.+.+..+..+|...|..
T Consensus 3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999988888888888889999999999999999999999999999999988864
No 3
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=88.83 E-value=6.3 Score=37.70 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
+|+..+...|.+|++-|.++.+.+.+-...++..+++.+..+++.
T Consensus 102 eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~e 146 (204)
T PRK09174 102 EADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEAS 146 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555554444444444444444444444444333
No 4
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=83.57 E-value=8.4 Score=35.92 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=13.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 351 EKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 351 EkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
+..+..+.+.....++.++..-+..|..+...
T Consensus 115 ~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~ 146 (181)
T PRK13454 115 DVAIAKADAEIAAKAAESEKRIAEIRAGALES 146 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444333
No 5
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=77.78 E-value=43 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014969 345 KLEMKLEKERSYSTDKILNKLKLAQMK 371 (415)
Q Consensus 345 KlE~KLEkkRA~a~EKm~NKLa~a~rk 371 (415)
..|.+|..-|.++.+-+.+--+.+++.
T Consensus 78 e~e~~L~~A~~ea~~ii~~A~~~a~~~ 104 (156)
T CHL00118 78 QYEQELSKARKEAQLEITQSQKEAKEI 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333333333
No 6
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=75.65 E-value=22 Score=32.92 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=15.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 350 LEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 350 LEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
.|+.+..+.+.....++.++...+..|..+...-..+
T Consensus 110 ~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 110 AEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443333333
No 7
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=75.59 E-value=52 Score=30.73 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 319 SKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 319 ~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
.|.++-...|..=|+ .|++|++.....|..|.+-|.++.+-.....+.+...|+..|+.++++
T Consensus 41 ~R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 41 NRQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544443 344555555666666666666665555555666666666666666555
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=75.48 E-value=16 Score=35.21 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Q 014969 364 KLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFH 398 (415)
Q Consensus 364 KLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR 398 (415)
.++.|+..|+..+..+++.+..+..+++-.|+.|+
T Consensus 206 ~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~ 240 (266)
T cd03404 206 VVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFE 240 (266)
T ss_pred HHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555544
No 9
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=73.93 E-value=27 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 361 ILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 361 m~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
....+..++...+..|..+...-.++
T Consensus 104 a~~~~~~A~~~I~~e~~~a~~el~~e 129 (167)
T PRK14475 104 IKRRAEMAERKIAQAEAQAAADVKAA 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343433333333
No 10
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=73.20 E-value=16 Score=35.67 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 325 EAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 325 EaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
+-+++.|+. +|++.+.+++..+..|.+.....+.+++|.+..++..-++||...+..
T Consensus 130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~ 186 (221)
T PF10376_consen 130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEA 186 (221)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 556777776 677889999999999999999999999998888888888888776554
No 11
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=73.19 E-value=11 Score=41.97 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEM-------------KLEKERSYSTDKILNKLKLAQMKAQEMRIS 378 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~-------------KLEkkRA~a~EKm~NKLa~a~rkAEekRA~ 378 (415)
.|...+..+-.+|+..-.+||-..++..++++-+||- .||++|.+.++.-...-.+||++-++.|-.
T Consensus 624 eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihreReelRrq 703 (940)
T KOG4661|consen 624 EERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHREREELRRQ 703 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHhhc
Confidence 3666777777788888889999888887777766652 244444444444444444555555544443
Q ss_pred HH
Q 014969 379 IS 380 (415)
Q Consensus 379 Ae 380 (415)
-+
T Consensus 704 qe 705 (940)
T KOG4661|consen 704 QE 705 (940)
T ss_pred cc
Confidence 33
No 12
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=70.07 E-value=83 Score=28.86 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 359 DKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 359 EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
+.+...++.++...+..+..+...
T Consensus 111 ~e~~~~~~~a~~~i~~e~~~a~~~ 134 (174)
T PRK07352 111 EDMARLKQTAAADLSAEQERVIAQ 134 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 13
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=69.76 E-value=57 Score=30.38 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 014969 321 LQREEAKITAWENLQRAKAEAAIRKLE-MKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKT 390 (415)
Q Consensus 321 ~qREEaKI~AWEN~QKAKAEA~mrKlE-~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka 390 (415)
+++--.-|.++|-.+=+.=|.+|+++. +.||-.+.-..++=.+.=.....+-+..+...++.++..+.|+
T Consensus 74 ~~kRr~mme~~E~~EW~~RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki 144 (154)
T PF14738_consen 74 LEKRRKMMEEMEWKEWAFREEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKI 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444567777777777888888763 3344333333333232223333333444444455555554444
No 14
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.41 E-value=44 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 014969 355 SYSTDKILNKLKLAQMKAQE 374 (415)
Q Consensus 355 A~a~EKm~NKLa~a~rkAEe 374 (415)
.++.+++..-|+.+.+.+++
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443333
No 15
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=69.37 E-value=84 Score=29.12 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 014969 367 LAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 367 ~a~rkAEekRA~AeAkr~eq 386 (415)
.++...+..+..+..+-.++
T Consensus 124 ~a~~~ie~Ek~~a~~~l~~e 143 (184)
T CHL00019 124 YKNETIRFEQQRAINQVRQQ 143 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333343433333333
No 16
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=68.75 E-value=35 Score=36.61 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=3.0
Q ss_pred cccccch
Q 014969 304 TCAPSLD 310 (415)
Q Consensus 304 aka~AWE 310 (415)
..+.-|.
T Consensus 315 ~~~~p~~ 321 (429)
T PRK00247 315 MIITPWR 321 (429)
T ss_pred ccCCccc
Confidence 3344454
No 17
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=68.65 E-value=37 Score=32.44 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccch
Q 014969 364 KLKLAQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 364 KLa~a~rkAEekRA~AeAkr~eq~ 387 (415)
.+..++...+..++.+..+-..++
T Consensus 145 ii~~A~~~Ie~Ek~~a~~~Lk~ei 168 (205)
T PRK06231 145 IIFQARQEIEKERRELKEQLQKES 168 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444433333333
No 18
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=68.55 E-value=22 Score=36.58 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 320 KLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 320 R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
--.+++.+|..||-+.-|.+++.....-..-++.|++..-+-.--++.+.++|.|....+..
T Consensus 237 EqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k 298 (379)
T COG5269 237 EQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALK 298 (379)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Confidence 33567888999998877765555443322223556666666666666667776655444433
No 19
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.92 E-value=80 Score=29.89 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFF 397 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~i 397 (415)
..+.+|..++.+++... .-+..+.+++..++++.++.++..+.++.+++...+..-..+
T Consensus 124 ~l~~~i~~L~~e~~~L~-~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELE-KQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333 234456788888888888888888888877776655544443
No 20
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=67.80 E-value=49 Score=28.88 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 014969 347 EMKLEKER 354 (415)
Q Consensus 347 E~KLEkkR 354 (415)
|.+|+.-|
T Consensus 63 e~~L~~a~ 70 (140)
T PRK07353 63 EQQLASAR 70 (140)
T ss_pred HHHHHHHH
Confidence 33333333
No 21
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=66.62 E-value=1.1e+02 Score=28.25 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 014969 347 EMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 347 E~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~ 387 (415)
+...+...+.+.+.....++.++...+..+..+...-..++
T Consensus 98 ~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei 138 (173)
T PRK13453 98 RQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQV 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555555544444444443
No 22
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=66.57 E-value=1.1e+02 Score=28.48 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQG 384 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~ 384 (415)
+|+..+.+.|.+|++-|.++.+.+.+-.+.+.+..++.++.+++.-.
T Consensus 80 eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~ 126 (181)
T PRK13454 80 KAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIA 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555444444444444333
No 23
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=66.10 E-value=49 Score=30.37 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 014969 326 AKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKT 390 (415)
Q Consensus 326 aKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka 390 (415)
.++..++..-..-.+...+..+...+..+..+.+.....+..++...+..|..+...-.+++...
T Consensus 75 ~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~l 139 (173)
T PRK13460 75 ARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444455555555555555566655656655555555554443
No 24
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.09 E-value=56 Score=37.24 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHH
Q 014969 311 LSEVAASISKLQRE 324 (415)
Q Consensus 311 eaEkaK~~~R~qRE 324 (415)
+.+..++..+.+++
T Consensus 510 ~~~~~~li~~L~~~ 523 (771)
T TIGR01069 510 KEEINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 25
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.89 E-value=1.1e+02 Score=28.09 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 341 AAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISI 379 (415)
Q Consensus 341 A~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~A 379 (415)
..+...|.+|+.-+.++.+-+.+-.+.+.+..++.++.+
T Consensus 68 ~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A 106 (173)
T PRK13460 68 ALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEET 106 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443333
No 26
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=65.28 E-value=38 Score=28.75 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 014969 360 KILNKLKLAQMKA 372 (415)
Q Consensus 360 Km~NKLa~a~rkA 372 (415)
.+...+..++...
T Consensus 92 ~~~~~~~~a~~~i 104 (132)
T PF00430_consen 92 EAERIIEQAEAEI 104 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 27
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=65.10 E-value=1e+02 Score=27.56 Aligned_cols=15 Identities=0% Similarity=0.031 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014969 365 LKLAQMKAQEMRISI 379 (415)
Q Consensus 365 La~a~rkAEekRA~A 379 (415)
++.++..++..+..+
T Consensus 94 ~~~A~~~~~~~~~~a 108 (141)
T PRK08476 94 IEAKKAELESKYEAF 108 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 28
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=64.87 E-value=77 Score=33.76 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Q 014969 361 ILNKLKLAQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 361 m~NKLa~a~rkAEekRA~AeAkr~eq~ 387 (415)
....+..++...+..|..+..+-..++
T Consensus 95 a~~i~~~a~~~Ie~ek~~a~~elr~ei 121 (445)
T PRK13428 95 AERIKVQGARQVQLLRAQLTRQLRLEL 121 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444333333
No 29
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=64.85 E-value=3.7 Score=35.22 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFH 398 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR 398 (415)
.+.+.++.++..++.+|..-+. ..+.+.+.|..+++.+++....|+..-..-+..+..+|..|.
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~-~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~ 102 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELRE-EEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEII 102 (131)
T ss_dssp HHHHHHHHHHHCCCCT-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhh-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666543 356777888888888888887777766666666666665553
No 30
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.83 E-value=77 Score=32.82 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 304 TCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 304 aka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
.++.+ -+.|+..+..+|++||.-++-==..+-.+...+--.+|..||+.....+.+++.+|..+.+.-..+.
T Consensus 84 Kkl~~-l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q 155 (310)
T PF09755_consen 84 KKLQQ-LKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQ 155 (310)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444 3456677788999998888743333444555555566777888888888888888888865444343
No 31
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=63.75 E-value=1.2e+02 Score=27.96 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
.+|+..+...|.+|++-|.++.+.+.+-.+.+++.+++.++.++.
T Consensus 75 ~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ 119 (184)
T PRK13455 75 EEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEA 119 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566665555555555555555554444444443
No 32
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=63.28 E-value=1.1e+02 Score=27.34 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
+++......|..|..-|.++.+....-++.++..+++.++.+.+.-..+
T Consensus 56 ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~ 104 (141)
T PRK08476 56 DVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESK 104 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555444443333
No 33
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.93 E-value=90 Score=35.70 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
+..+++++++.+||+++.++.++-.+.+..++++|++.-
T Consensus 541 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l 579 (782)
T PRK00409 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAI 579 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555554443
No 34
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=62.41 E-value=66 Score=31.67 Aligned_cols=6 Identities=17% Similarity=-0.030 Sum_probs=2.2
Q ss_pred chhhHH
Q 014969 309 LDLSEV 314 (415)
Q Consensus 309 WEeaEk 314 (415)
.++++.
T Consensus 45 l~~Ae~ 50 (250)
T PRK14474 45 WQDAEQ 50 (250)
T ss_pred HHHHHH
Confidence 333333
No 35
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.32 E-value=63 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
.|++.+.+.|.+|++-|.++.+-+.+--+.++..+++.+..+++.
T Consensus 55 ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e 99 (161)
T COG0711 55 EAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEE 99 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555444433
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=61.75 E-value=89 Score=34.11 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014969 325 EAKITAWE 332 (415)
Q Consensus 325 EaKI~AWE 332 (415)
+.+|..-|
T Consensus 81 e~~L~qrE 88 (520)
T PRK12704 81 RNELQKLE 88 (520)
T ss_pred HHHHHHHH
Confidence 33333333
No 37
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=60.93 E-value=76 Score=36.98 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014969 348 MKLEKERSYSTDKILNKLKLAQMKAQ 373 (415)
Q Consensus 348 ~KLEkkRA~a~EKm~NKLa~a~rkAE 373 (415)
+..|++|+++.-.++.|++..+++|+
T Consensus 949 e~ee~k~~k~e~e~kRK~eEeqr~~q 974 (1259)
T KOG0163|consen 949 EEEEKKRAKAEMETKRKAEEEQRKAQ 974 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33556666666666677777666664
No 38
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=59.92 E-value=83 Score=27.70 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 014969 353 ERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 353 kRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~ 387 (415)
.+..+.+.....+..++...+..+..+...-..++
T Consensus 81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~ 115 (147)
T TIGR01144 81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQV 115 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444433333
No 39
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=59.87 E-value=1.7e+02 Score=28.16 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 014969 347 EMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAH 392 (415)
Q Consensus 347 E~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~e 392 (415)
+...+..+.++.+.+...++.+++..+..|..+...-...+..++.
T Consensus 133 ~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~ 178 (204)
T PRK09174 133 KAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAA 178 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777777777776666665555554443
No 40
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=58.95 E-value=1.4e+02 Score=28.15 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQM 370 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~r 370 (415)
+|+.-++..+.++++.+..+.+|.........+
T Consensus 28 ~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~ 60 (185)
T PRK01194 28 RIEKLEKECDSKIQSIKEYYEKKMRAEISRLKK 60 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444433
No 41
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=58.73 E-value=69 Score=35.62 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 332 ENLQRAKAEAAIRKLEMKLEKERSYST-DKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~KLEkkRA~a~-EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
+..++-.||.+-++-|+.+-+|+-.-+ -+++.+++.++.|+|++|..+|.++..+
T Consensus 219 ~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~~k~ 274 (591)
T KOG2412|consen 219 SEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKE 274 (591)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333333333 2346677777777888887776665443
No 42
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=58.62 E-value=1.1e+02 Score=28.66 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014969 350 LEKERSYSTDKILNKLKLAQMKAQEMRI 377 (415)
Q Consensus 350 LEkkRA~a~EKm~NKLa~a~rkAEekRA 377 (415)
++..++.+.+.+.+--+.++.++++.|.
T Consensus 60 Ae~l~a~ye~~L~~Ar~eA~~I~~e~~~ 87 (155)
T PRK06569 60 VEKLNKYYNEEIDKTNTEIDRLKKEKID 87 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 43
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=57.92 E-value=1.4e+02 Score=28.17 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENL 334 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~ 334 (415)
+...++..+|..-+..|..|+..
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888888764
No 44
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=57.90 E-value=48 Score=35.28 Aligned_cols=57 Identities=12% Similarity=-0.043 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Q 014969 342 AIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFH 398 (415)
Q Consensus 342 ~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR 398 (415)
++.+.+.+.|+.+.++...-...+..|+..|+...+.|||.+.+.+++++-.|+.|-
T Consensus 253 ~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~ 309 (419)
T PRK10930 253 DAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFA 309 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333344445566666666666667788888888888888888888888877665543
No 45
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=56.67 E-value=75 Score=33.91 Aligned_cols=48 Identities=38% Similarity=0.383 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH--H--------HHHHHHHHHHHHHHHHHH
Q 014969 329 TAWENLQRAKAEAAIRKLEMKLEKERSYS--T--------DKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 329 ~AWEN~QKAKAEA~mrKlE~KLEkkRA~a--~--------EKm~NKLa~a~rkAEekR 376 (415)
..+|-.+|-|||-+-+|+|+.||..|.+- + .|+.+|++....||++--
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~ 212 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIM 212 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 46888999999999999999987665442 1 467778888888887653
No 46
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.43 E-value=56 Score=37.28 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=60.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 305 CAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLE----KERSYSTDKILNKLKLAQMKAQEMRISIS 380 (415)
Q Consensus 305 ka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLE----kkRA~a~EKm~NKLa~a~rkAEekRA~Ae 380 (415)
+.+.|.|+|---+..+.+.|..-+.|.++.-|+.+|++.++.-.+|| -.|+-..+||-.+++.++.---+.--...
T Consensus 814 klde~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~ 893 (948)
T KOG0577|consen 814 KLDEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLL 893 (948)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 45778899988888999999999999999999999887766544444 46788888888888777654433333444
Q ss_pred HHhccch
Q 014969 381 AKQGQQL 387 (415)
Q Consensus 381 Akr~eq~ 387 (415)
.++.+++
T Consensus 894 er~~~e~ 900 (948)
T KOG0577|consen 894 ERHAREI 900 (948)
T ss_pred hhhHHHH
Confidence 4444443
No 47
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=56.35 E-value=1.7e+02 Score=27.03 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.1
Q ss_pred HHHHHHHhhHH
Q 014969 347 EMKLEKERSYS 357 (415)
Q Consensus 347 E~KLEkkRA~a 357 (415)
|.+|..-|.++
T Consensus 76 e~~l~~a~~ea 86 (173)
T PRK13453 76 KQKLKETQEEV 86 (173)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 48
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=56.09 E-value=31 Score=27.83 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014969 320 KLQRE-EAKITAWENLQRA-KAEAAIRKLEMKLEKERSYSTDKILNK 364 (415)
Q Consensus 320 R~qRE-EaKI~AWEN~QKA-KAEA~mrKlE~KLEkkRA~a~EKm~NK 364 (415)
+.+++ +.+++-||-++|. |=-.+++.++.+|.++|...++-.-++
T Consensus 15 ~~K~~l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~FLn~~v~~ 61 (62)
T PF06034_consen 15 QMKRQLTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNFLNFGVNN 61 (62)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33443 7788899999885 666789999999999999988876654
No 49
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=55.59 E-value=1.2e+02 Score=29.77 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 308 SLDLSEVAASISKLQREEAKITAWENLQRA 337 (415)
Q Consensus 308 AWEeaEkaK~~~R~qREEaKI~AWEN~QKA 337 (415)
.||.++++-...|++ ..+|..||+.++.
T Consensus 134 ~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 134 DYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 467777666666653 4556667776664
No 50
>PTZ00121 MAEBL; Provisional
Probab=54.70 E-value=67 Score=39.70 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014969 329 TAWENLQRAKAEAAIRKLE 347 (415)
Q Consensus 329 ~AWEN~QKAKAEA~mrKlE 347 (415)
.-+|..++.|||..-++-|
T Consensus 1599 ~~~~~~~~~kae~~kk~ee 1617 (2084)
T PTZ00121 1599 KLYEEEKKMKAEEAKKAEE 1617 (2084)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 3455556666665554443
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.66 E-value=71 Score=31.49 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014969 336 RAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEM 375 (415)
Q Consensus 336 KAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEek 375 (415)
.++..+++.++|.+||+ +...+|+..++.....+.+|+.
T Consensus 153 ~~~~~~~~~kL~~el~~-~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEK-KQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666665 3444555555555555555543
No 52
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=54.51 E-value=1.9e+02 Score=30.91 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=12.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 014969 348 MKLEKERSYSTDKILNKLKLAQM 370 (415)
Q Consensus 348 ~KLEkkRA~a~EKm~NKLa~a~r 370 (415)
.++|+.|..+++.+++++..+--
T Consensus 104 ~~Ie~ek~~a~~elr~ei~~lAv 126 (445)
T PRK13428 104 RQVQLLRAQLTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433
No 53
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.02 E-value=1.5e+02 Score=33.83 Aligned_cols=7 Identities=43% Similarity=1.009 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 014969 29 DTFPSPG 35 (415)
Q Consensus 29 g~fpSPg 35 (415)
++||.+.
T Consensus 285 ~~~P~~~ 291 (771)
T TIGR01069 285 GEFPMPS 291 (771)
T ss_pred Ceeceec
Confidence 4566543
No 54
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=53.94 E-value=1.7e+02 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 014969 346 LEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKT 390 (415)
Q Consensus 346 lE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka 390 (415)
.+...+..+..+.+.....+..++...+..|..+...-..++...
T Consensus 101 a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~l 145 (156)
T CHL00118 101 AKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTL 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555555555555544444443
No 55
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=53.33 E-value=1.7e+02 Score=26.38 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 360 KILNKLKLAQMKAQEMRISISAKQ 383 (415)
Q Consensus 360 Km~NKLa~a~rkAEekRA~AeAkr 383 (415)
.....++.++...+..+..+...-
T Consensus 101 ea~~~~~~a~~~i~~ek~~a~~~l 124 (164)
T PRK14471 101 EGDKMIEQAKASIESEKNAAMAEI 124 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444443333
No 56
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.89 E-value=88 Score=29.07 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=5.8
Q ss_pred HHHHHhhHHHHHHHH
Q 014969 349 KLEKERSYSTDKILN 363 (415)
Q Consensus 349 KLEkkRA~a~EKm~N 363 (415)
.-++.+.++.++...
T Consensus 82 ~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 82 VTKKIIQEKTKEIEE 96 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334333333
No 57
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=52.72 E-value=82 Score=31.39 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014969 335 QRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKA 372 (415)
Q Consensus 335 QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkA 372 (415)
..+|.|..|+.+|.++|| |-+-++++++.|+.++.+-
T Consensus 68 eq~k~e~~m~~Lea~VEk-rD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEK-RDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred hHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 346889999999999997 8888999999998877653
No 58
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=52.48 E-value=52 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 318 ISKLQREEAKITAWENLQRAKAEAAI 343 (415)
Q Consensus 318 ~~R~qREEaKI~AWEN~QKAKAEA~m 343 (415)
.++....+.+|..|+.++||++.|+.
T Consensus 31 ~~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 31 LRQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 45666779999999999999988754
No 59
>PTZ00121 MAEBL; Provisional
Probab=52.41 E-value=71 Score=39.53 Aligned_cols=8 Identities=13% Similarity=0.488 Sum_probs=4.2
Q ss_pred eeeccchh
Q 014969 275 TISWSKRH 282 (415)
Q Consensus 275 i~rWs~ke 282 (415)
++.|+.|.
T Consensus 1262 ~a~~A~r~ 1269 (2084)
T PTZ00121 1262 MAHFARRQ 1269 (2084)
T ss_pred HHHHHHHh
Confidence 44455555
No 60
>PRK11637 AmiB activator; Provisional
Probab=51.59 E-value=2.2e+02 Score=29.73 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEM 375 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEek 375 (415)
.+++.+|+.++.+|+... ..++.+..+|+.++...+..
T Consensus 71 ~~~~~~l~~l~~qi~~~~-~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 71 ASLLAQLKKQEEAISQAS-RKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666542 23333444444444444333
No 61
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=50.78 E-value=75 Score=35.06 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHH---------
Q 014969 312 SEVAASISKLQREEAKITAWE----NLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKL----AQMKAQE--------- 374 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWE----N~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~----a~rkAEe--------- 374 (415)
||+.-++.+||+. +.+-| +.++--.|..+.+.|.=|.-+|.-++|-|..-|+. .|+.-+.
T Consensus 285 AekqalnqhFQ~~---v~sLEee~a~erqqlvetH~~RV~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEq 361 (615)
T KOG3540|consen 285 AEKQALNQHFQKT---VSSLEEEAARERQQLVETHEARVEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQ 361 (615)
T ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 4444455555544 33333 23344456778888888888888899888877753 3444444
Q ss_pred HHHHHHHHhccchhhH-HHHHHHhhcc
Q 014969 375 MRISISAKQGQQLPKT-AHKAAFFHKH 400 (415)
Q Consensus 375 kRA~AeAkr~eq~~Ka-~eKA~~iR~T 400 (415)
|-..-.-++-++++++ -+||+.||.+
T Consensus 362 Kdr~HTlrhyqHv~~vDpkkAaqmk~q 388 (615)
T KOG3540|consen 362 KDRMHTLRHYQHVLAVDPKKAAQMKSQ 388 (615)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4344444555666666 5688887753
No 62
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=50.66 E-value=29 Score=38.30 Aligned_cols=42 Identities=38% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 331 WENLQRAKAEAAIRK--LEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQ 383 (415)
Q Consensus 331 WEN~QKAKAEA~mrK--lE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr 383 (415)
-|..|+-.-||+.|| +|.+.|.||.+ +.|+|||-|+..|+.+
T Consensus 397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~ 440 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEV 440 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhh
Confidence 345555555666655 45666666654 5667777776665543
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.66 E-value=52 Score=29.37 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 327 KITAWENLQRAKAEAAIRKLEMKLEK 352 (415)
Q Consensus 327 KI~AWEN~QKAKAEA~mrKlE~KLEk 352 (415)
+...|-...+++.+.+|||.|.++++
T Consensus 119 klk~~~~~~~tq~~~e~rkke~E~~k 144 (151)
T PF11559_consen 119 KLKNQLQQRKTQYEHELRKKEREIEK 144 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333
No 64
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.39 E-value=2.3e+02 Score=30.68 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=8.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 014969 346 LEMKLEKERSYSTDKILNKL 365 (415)
Q Consensus 346 lE~KLEkkRA~a~EKm~NKL 365 (415)
+..++++.+.+..++|..+|
T Consensus 312 ~~~e~~~~~~~l~~~~~~~L 331 (582)
T PF09731_consen 312 LREEFEREREELEEKYEEEL 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=50.23 E-value=1.3e+02 Score=35.12 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=4.2
Q ss_pred cccccccc
Q 014969 212 EAVVSRVV 219 (415)
Q Consensus 212 ~t~~~~~v 219 (415)
+|.-+|+|
T Consensus 661 Gt~FiRCi 668 (1259)
T KOG0163|consen 661 GTHFIRCI 668 (1259)
T ss_pred CCeeEEee
Confidence 55555555
No 66
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=49.63 E-value=2e+02 Score=28.42 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHH
Q 014969 309 LDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSY----------STDKILNKLKLAQMKAQEMRIS 378 (415)
Q Consensus 309 WEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~----------a~EKm~NKLa~a~rkAEekRA~ 378 (415)
.-|++++|++.||-...++.++=.-.+-++|.|++.++|.-++..+-. -.+.|. -|+.++|+++.
T Consensus 132 ~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emL-----qqkEkeekK~~ 206 (225)
T KOG4848|consen 132 FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEML-----QQKEKEEKKAV 206 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHH-----HHHHHHHHHHH
Confidence 456788888888877766666555555556666666555444433311 112222 23455666666
Q ss_pred HHHHhcc
Q 014969 379 ISAKQGQ 385 (415)
Q Consensus 379 AeAkr~e 385 (415)
-|++|.+
T Consensus 207 KeaKrk~ 213 (225)
T KOG4848|consen 207 KEAKRKE 213 (225)
T ss_pred HHHHHHH
Confidence 6666544
No 67
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=49.60 E-value=2.1e+02 Score=26.24 Aligned_cols=29 Identities=3% Similarity=-0.048 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 354 RSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 354 RA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
++.+.+.....+..++...+..+..+...
T Consensus 105 ~~~A~~ea~~~~~~a~~~I~~e~~~a~~~ 133 (175)
T PRK14472 105 TEKAHTEAKKMIASAKEEIEQEKRRALDV 133 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 68
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=49.49 E-value=2.1e+02 Score=26.17 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=3.6
Q ss_pred HHHHHHhhHH
Q 014969 348 MKLEKERSYS 357 (415)
Q Consensus 348 ~KLEkkRA~a 357 (415)
.+|+.-|.++
T Consensus 69 ~~L~~A~~ea 78 (167)
T PRK14475 69 AEREEAERQA 78 (167)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 69
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.45 E-value=1.4e+02 Score=27.76 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 319 SKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 319 ~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
.++-+.++++.+....-+...++..+ .+.+-+++-.+-+++++++|+.++.-.+..+.+++..
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~-~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEK-LLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444433333222221 1222333445566777777777777777777666544
No 70
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=48.26 E-value=1.3e+02 Score=24.86 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 339 AEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISI 379 (415)
Q Consensus 339 AEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~A 379 (415)
++.+|+.+-..++.......++..+++..+..++++.-..+
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a 43 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDA 43 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554443333
No 71
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=47.98 E-value=1.7e+02 Score=24.76 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 014969 344 RKLEMKLEKERSYSTDKIL 362 (415)
Q Consensus 344 rKlE~KLEkkRA~a~EKm~ 362 (415)
...+.+|...|.++.+-+.
T Consensus 54 ~e~~~~l~~a~~ea~~i~~ 72 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIE 72 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 72
>PF12528 DUF3728: Prepilin peptidase dependent protein C (DUF3728); InterPro: IPR022204 This family of proteins is found in bacteria. Proteins in this family are typically between 106 and 121 amino acids in length. The family is found in association with PF07963 from PFAM. There are two completely conserved C residues that may be functionally important. This family is frequently annotated as prepilin peptidase dependent protein C however there is little accompanying literature to confirm this.
Probab=47.69 E-value=12 Score=31.28 Aligned_cols=44 Identities=27% Similarity=0.590 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCcccCCCCCCCccccceeccccCCCCCCCCCcccccccccc
Q 014969 33 SPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICS 83 (415)
Q Consensus 33 SPgtpkGwsSERVp~~~~~~rR~~~~~~l~Pf~~GRtlPSKWeDAErWI~S 83 (415)
.++.|.||..+++.-...++=+.+.+...+|.+ +.-...||+|+
T Consensus 39 ~~~~~~gWq~~~~~~~~~~~C~~itvtv~tP~~-------~~a~LsRw~C~ 82 (84)
T PF12528_consen 39 LSGPPPGWQYSRQQTSIQGGCRSITVTVTTPQN-------QQAQLSRWFCP 82 (84)
T ss_pred ccCCCCCceeeeeeeccCCCeEEEEEEEecCCC-------ccccceeeecC
Confidence 346779999999976656666777777778987 55678899996
No 73
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=47.33 E-value=2.2e+02 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 014969 364 KLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 364 KLa~a~rkAEekRA~AeAkr~eq 386 (415)
.+..++...+..|..+...-..+
T Consensus 105 ~~~~a~~~I~~ek~~a~~~L~~~ 127 (164)
T PRK14473 105 IKEEARAQAEQERQRMLSELKSQ 127 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344433333333
No 74
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=47.08 E-value=88 Score=31.53 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=33.8
Q ss_pred ccccccccccchhhHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHH----HHH--HhhHHHHHHHHHHHHH
Q 014969 299 QNVTGTCAPSLDLSEVAASISKLQRE--EAKITAWE--NLQRAKAEAAIRKLEMK----LEK--ERSYSTDKILNKLKLA 368 (415)
Q Consensus 299 k~~~eaka~AWEeaEkaK~~~R~qRE--EaKI~AWE--N~QKAKAEA~mrKlE~K----LEk--kRA~a~EKm~NKLa~a 368 (415)
|...|.....|.-.| +|...+++++ -.||..-- |-|+--|+..+||+-+| .|| +-+++.|+.+-.|..|
T Consensus 79 Kigled~~t~~r~~e-akvraei~~mkVt~kvn~h~kI~g~rKtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei 157 (265)
T PF06409_consen 79 KIGLEDLFTLWRHME-AKVRAEIRKMKVTTKVNSHYKINGKRKTAKKHLRKLSMKECEHAEKERQLSEAEENGKLAMKEI 157 (265)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHH
Confidence 344555566666655 5666666533 23344332 22333333334444322 333 3366666665555555
Q ss_pred HH
Q 014969 369 QM 370 (415)
Q Consensus 369 ~r 370 (415)
+-
T Consensus 158 ~t 159 (265)
T PF06409_consen 158 HT 159 (265)
T ss_pred HH
Confidence 53
No 75
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=46.16 E-value=56 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 350 LEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 350 LEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
+++.|....+.+..+.+.+....+.|+..++.++..|
T Consensus 11 ~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E 47 (151)
T PF11875_consen 11 IEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKE 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444555555555544444
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.04 E-value=1.1e+02 Score=31.77 Aligned_cols=21 Identities=5% Similarity=-0.111 Sum_probs=14.7
Q ss_pred cccccccccchhhHHHHHHHH
Q 014969 300 NVTGTCAPSLDLSEVAASISK 320 (415)
Q Consensus 300 ~~~eaka~AWEeaEkaK~~~R 320 (415)
...++++..|++..+..|...
T Consensus 116 ~~te~~l~~y~~~n~~~I~~n 136 (309)
T TIGR00570 116 ENTKKKIETYQKENKDVIQKN 136 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 346788888888776666643
No 77
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.84 E-value=2.6e+02 Score=33.53 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEK 352 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEk 352 (415)
...+.+..+..+.+|..|-...+.+++.++..++..+++
T Consensus 658 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 696 (1201)
T PF12128_consen 658 LQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQ 696 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556667777777777777777777777655443
No 78
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=43.20 E-value=2.9e+02 Score=26.52 Aligned_cols=15 Identities=13% Similarity=-0.203 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014969 367 LAQMKAQEMRISISA 381 (415)
Q Consensus 367 ~a~rkAEekRA~AeA 381 (415)
.+.+.++..++.+++
T Consensus 222 ~a~~~~~~~~ae~~a 236 (266)
T cd03404 222 EAYKEEVIAEAQGEA 236 (266)
T ss_pred HHHHHhHHHHHHHHH
Confidence 333333333333333
No 79
>PRK10698 phage shock protein PspA; Provisional
Probab=42.65 E-value=3.3e+02 Score=26.45 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014969 313 EVAASISKLQREEAKITAWENL 334 (415)
Q Consensus 313 EkaK~~~R~qREEaKI~AWEN~ 334 (415)
....+..+|...+..|..|+..
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888763
No 80
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.54 E-value=2.3e+02 Score=24.67 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 014969 346 LEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPK 389 (415)
Q Consensus 346 lE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~K 389 (415)
.+...+.+++.+.+.....+..++...+..+..+...-..++..
T Consensus 84 a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~ 127 (140)
T PRK07353 84 ADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDA 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433
No 81
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=42.24 E-value=2.5e+02 Score=24.91 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=14.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 351 EKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 351 EkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
++.+..+.+.....+..++...+..+..+..+-..+
T Consensus 88 ~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~ 123 (156)
T PRK05759 88 EEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQ 123 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444443333333
No 82
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=41.81 E-value=32 Score=37.18 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014969 345 KLEMKLEKERSYSTDKILNKLKLAQMKA 372 (415)
Q Consensus 345 KlE~KLEkkRA~a~EKm~NKLa~a~rkA 372 (415)
++|.-||+.+.....|++|||+..+-+.
T Consensus 147 ~lEq~leqeqef~vnKlm~ki~Klen~t 174 (552)
T KOG2129|consen 147 PLEQLLEQEQEFFVNKLMNKIRKLENKT 174 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666666666666666666655444
No 83
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.97 E-value=2.7e+02 Score=33.85 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccchhhHHHHHHHhhccCCCCCCccc
Q 014969 342 AIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISI-SAKQGQQLPKTAHKAAFFHKHGPMSSFRSC 409 (415)
Q Consensus 342 ~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~A-eAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gC 409 (415)
+++.++.+|+++|..... +...+.....+++|+++.. ..+-++++++ .--.+...|++|++.|=
T Consensus 557 e~~~~~k~l~~~~~e~~~-~~~~~~~~rqrveE~ks~~~~~~s~~kVl~---al~r~kesG~i~Gf~GR 621 (1293)
T KOG0996|consen 557 ELKEKEKELPKLRKEERN-LKSQLNKLRQRVEEAKSSLSSSRSRNKVLD---ALMRLKESGRIPGFYGR 621 (1293)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcCCCCccccc
Confidence 344444445544443332 3334446677777777744 4444445444 34456688999987764
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.90 E-value=3.9e+02 Score=28.95 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 343 IRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 343 mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
|..-+.+||..+++ ...+.+.|+++...|...|.+++|++..+
T Consensus 219 l~~~q~~l~eL~~~-~~~L~~~Ias~e~~aA~~re~~aa~~aa~ 261 (420)
T COG4942 219 LSADQKKLEELRAN-ESRLKNEIASAEAAAAKAREAAAAAEAAA 261 (420)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443332 35677788887755555555555444443
No 85
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=40.54 E-value=1.5e+02 Score=27.26 Aligned_cols=29 Identities=10% Similarity=0.018 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014969 342 AIRKLEMKLEKERSYSTDKILNKLKLAQM 370 (415)
Q Consensus 342 ~mrKlE~KLEkkRA~a~EKm~NKLa~a~r 370 (415)
-+...+.+.++.+..+.++.......+.+
T Consensus 32 i~~ea~~~a~~i~~~~~~~a~~e~~~~~~ 60 (188)
T PRK02292 32 IIAEAEADAEEILEDREAEAEREIEQLRE 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 86
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=39.88 E-value=1.3e+02 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD 359 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~E 359 (415)
.|+.|+...++.++.....-.-.++-..+..+..|+..++++|....+
T Consensus 138 ~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~ 185 (221)
T PF10376_consen 138 EEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQE 185 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 377888888888888887777777777777777888888887765544
No 87
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=39.88 E-value=91 Score=29.23 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
.++..+.-++|..|+.|-+..- -++.|-+-++|++-|..+++-+...++-++|-|+..-
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrle---geeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~~ 109 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLE---GEEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKEN 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667788889999999987654 3578899999999999999999999999999887544
No 88
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=39.86 E-value=3.6e+02 Score=31.89 Aligned_cols=13 Identities=31% Similarity=0.210 Sum_probs=7.8
Q ss_pred ccccccccCCCCC
Q 014969 221 RRDMATQMSPESS 233 (415)
Q Consensus 221 ~RD~gTqMTP~~S 233 (415)
-|+-+|+|+-.++
T Consensus 517 ir~~L~~m~~~L~ 529 (988)
T KOG2072|consen 517 IRSQLTAMAESLS 529 (988)
T ss_pred HHHHHHHHHHHHH
Confidence 3566677765444
No 89
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=93 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 360 KILNKLKLAQMKAQEMRISISAKQ 383 (415)
Q Consensus 360 Km~NKLa~a~rkAEekRA~AeAkr 383 (415)
-|+.+|..-++.||++-|.-.++|
T Consensus 111 efq~r~ek~~kaaEeKTaKKRaKR 134 (213)
T KOG4055|consen 111 EFQIRLEKNQKAAEEKTAKKRAKR 134 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333
No 90
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=39.79 E-value=2.1e+02 Score=30.22 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=9.8
Q ss_pred cccccchhhHHHHHHHHHHHH
Q 014969 304 TCAPSLDLSEVAASISKLQRE 324 (415)
Q Consensus 304 aka~AWEeaEkaK~~~R~qRE 324 (415)
.++.+=+|+++.|...-.+|+
T Consensus 152 a~aka~aEA~k~Ka~aeAkkk 172 (387)
T COG3064 152 AKAKAAAEAAKLKAAAEAKKK 172 (387)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 334445555554444444444
No 91
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.41 E-value=3.4e+02 Score=25.72 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKA 394 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA 394 (415)
....++|+..-..-.++-..+...++..+..++.+++.... -.+.+..+++.+..+.+......++.+..+..+-++..
T Consensus 94 ~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~-e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei 172 (189)
T PF10211_consen 94 RMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEE-EKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEI 172 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565554444555545555566656666666666544 45667777777777777776666666666666667777
Q ss_pred HHhhccC
Q 014969 395 AFFHKHG 401 (415)
Q Consensus 395 ~~iR~TG 401 (415)
.++++.+
T Consensus 173 ~~lk~~~ 179 (189)
T PF10211_consen 173 DFLKKQN 179 (189)
T ss_pred HHHHHHH
Confidence 7776654
No 92
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.09 E-value=4.8e+02 Score=28.26 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=12.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 014969 346 LEMKLEKERSYSTDKILNKLKLAQ 369 (415)
Q Consensus 346 lE~KLEkkRA~a~EKm~NKLa~a~ 369 (415)
|+.+|++....+.+++.|.|....
T Consensus 331 L~~eL~~~~~~~~~~l~~~l~~~~ 354 (582)
T PF09731_consen 331 LRQELKRQEEAHEEHLKNELREQA 354 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555566666554433
No 93
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.05 E-value=4.3e+02 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 346 LEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 346 lE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
.|.++|..|-...|-++..-+.+.++-+.+|++.|.
T Consensus 164 ~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~ 199 (630)
T KOG0742|consen 164 YEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQ 199 (630)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHH
Confidence 344444444444444444445555555555665544
No 94
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=37.81 E-value=3.9e+02 Score=26.45 Aligned_cols=68 Identities=24% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYS-------TDKILNKLKLAQMKAQEMRISISAKQG 384 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a-------~EKm~NKLa~a~rkAEekRA~AeAkr~ 384 (415)
++.++++.+..+++.+=...+++++.++-.+.|.-+|..|-+. -++++.-|+ ++..|+++..-++++.
T Consensus 127 a~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~--~kEkeeKKk~K~aKkk 201 (217)
T PF10147_consen 127 AKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQ--EKEKEEKKKKKEAKKK 201 (217)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333344333333333333445555555555555555555332 122333232 4445555555555543
No 95
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=36.85 E-value=3.7e+02 Score=28.46 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHH
Q 014969 318 ISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYS---TDKILNKLKLA 368 (415)
Q Consensus 318 ~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a---~EKm~NKLa~a 368 (415)
..|.|-.+..+++---+|. |.||+|..+|.+-+.++.+. .|-|+|+|.++
T Consensus 220 t~RMqvlkrQv~SL~~HQ~-KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQR-KLEAELLQIEERHQEKKRKFLESTDSFNNELKRL 272 (410)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 3466666777777777764 88999988888877444333 35667766653
No 96
>PTZ00491 major vault protein; Provisional
Probab=36.68 E-value=2.1e+02 Score=33.53 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.3
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 301 VTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEM 348 (415)
Q Consensus 301 ~~eaka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~ 348 (415)
++++...|=|-+-.+|..++..-|-+.|.+=-+.+.|+.+|+-.+||.
T Consensus 703 el~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~ 750 (850)
T PTZ00491 703 ELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEA 750 (850)
T ss_pred HHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhh
Confidence 345555666666666777777777777777666666666666666653
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.49 E-value=4.2e+02 Score=29.33 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=9.1
Q ss_pred cccccccccccc
Q 014969 133 VLDGGRVKNFVA 144 (415)
Q Consensus 133 ~~~~~~v~~~~a 144 (415)
+|||..+..|..
T Consensus 152 fFDGE~I~~la~ 163 (650)
T TIGR03185 152 FFDGEKIEALAN 163 (650)
T ss_pred cccHHHHHHHhc
Confidence 789888877654
No 98
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=36.46 E-value=4.1e+02 Score=25.81 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=5.4
Q ss_pred HHHHhhHHHHHHHHH
Q 014969 350 LEKERSYSTDKILNK 364 (415)
Q Consensus 350 LEkkRA~a~EKm~NK 364 (415)
+|..+..+++.++++
T Consensus 110 ie~E~~~a~~~l~~e 124 (246)
T TIGR03321 110 LRREQAALSDELRRR 124 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 99
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=36.26 E-value=2.8e+02 Score=23.87 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 341 AAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISI 379 (415)
Q Consensus 341 A~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~A 379 (415)
.-+.+...++|..|..+++.+++.++.+-..|+++...+
T Consensus 54 ~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~a 92 (103)
T PRK08404 54 KLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETA 92 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777778888888888888777777766543
No 100
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=36.07 E-value=1.9e+02 Score=28.11 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 014969 322 QREEAKITAWENLQRAKAEAAIRKLE-MKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 322 qREEaKI~AWEN~QKAKAEA~mrKlE-~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~ 387 (415)
+|+-.-+..|+....--- .|++.+ .+.|.++....++|+.++......+...|-..++-+.+.+
T Consensus 41 ~r~~~VmkeW~eaE~~~~--~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV 105 (193)
T PF12925_consen 41 ERMTKVMKEWSEAEERYK--ELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRV 105 (193)
T ss_dssp HHHHHHHHHHHHHHHTTT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566788987654322 445555 6789999999999999999999999888877777766654
No 101
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.57 E-value=2.7e+02 Score=28.86 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 014969 325 EAKITAWENLQRA 337 (415)
Q Consensus 325 EaKI~AWEN~QKA 337 (415)
|++|..||..-++
T Consensus 119 e~~l~~y~~~n~~ 131 (309)
T TIGR00570 119 KKKIETYQKENKD 131 (309)
T ss_pred HHHHHHHHHHhHH
Confidence 4444444444333
No 102
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=35.51 E-value=3.8e+02 Score=25.70 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q 014969 391 AHKAAFFH 398 (415)
Q Consensus 391 ~eKA~~iR 398 (415)
.++-..+.
T Consensus 91 ~e~L~~i~ 98 (194)
T COG1390 91 EEKLRNIA 98 (194)
T ss_pred HHHHHcCc
Confidence 33333333
No 103
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.49 E-value=4.6e+02 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014969 317 SISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNK 364 (415)
Q Consensus 317 ~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NK 364 (415)
...|++..+.....++..++ +.++.|+..+..+|.-.....+||...
T Consensus 209 ~~~k~e~~e~e~~~l~e~~~-~~~~~le~~~~~~ee~~~~L~ekme~e 255 (297)
T PF02841_consen 209 EQAKAEAAEKEKEKLEEKQK-EQEQMLEQQERSYEEHIKQLKEKMEEE 255 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555443 233344444444444444444444333
No 104
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.42 E-value=4.4e+02 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEK 352 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEk 352 (415)
+.+.....-++|+|..+..-=-.+.-.-|++|+..|..|--
T Consensus 326 aKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~ 366 (406)
T KOG3859|consen 326 AKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHE 366 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666655543333344457777777766543
No 105
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=35.36 E-value=52 Score=33.90 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDK 360 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EK 360 (415)
+|-.+|||.++-.+.|.|+.|+.+.-.
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~AvA~ 255 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMAVAR 255 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888766543
No 106
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=35.13 E-value=99 Score=27.86 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 313 EVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKL 350 (415)
Q Consensus 313 EkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KL 350 (415)
+.+.+.+.++.+-+.|..|-..+.+..+.+++.+|..|
T Consensus 18 ~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l 55 (149)
T PF07352_consen 18 EIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555544433
No 107
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.11 E-value=1.9e+02 Score=29.56 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014969 335 QRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRI 377 (415)
Q Consensus 335 QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA 377 (415)
+.++.+.+|..++.+|+++... .+++++.|..-+.+|++.++
T Consensus 16 ~V~~m~~~L~~~~~~L~~k~~e-~e~ll~~i~~~~~~a~~~~~ 57 (344)
T PF12777_consen 16 QVEEMQEELEEKQPELEEKQKE-AEELLEEIEKEQEEAEKKKA 57 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555433 34455555444444444443
No 108
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=34.90 E-value=2.1e+02 Score=27.53 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=0.0
Q ss_pred hhccCCCC
Q 014969 397 FHKHGPMS 404 (415)
Q Consensus 397 iR~TGk~P 404 (415)
+|..|.-|
T Consensus 161 lr~~~yNP 168 (190)
T PF06936_consen 161 LRGSDYNP 168 (190)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 34444433
No 109
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=34.54 E-value=3.1e+02 Score=27.16 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHhhHHHHHHHHHHHHHHHH
Q 014969 307 PSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIR------KLE-MKLEKERSYSTDKILNKLKLAQMK 371 (415)
Q Consensus 307 ~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mr------KlE-~KLEkkRA~a~EKm~NKLa~a~rk 371 (415)
..||.++++--..|-+ ..+|..||+.++. |+.+.. |.| ...++.|...+.+...++...+.+
T Consensus 133 ~~~enA~k~L~KaR~~--~kev~~aE~~~~~-a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lk 201 (218)
T cd07662 133 VDYENANKALDKARAK--NKDVLQAETTQQL-CCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK 201 (218)
T ss_pred HHHHHHHHHHHHHHHc--CChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467776666555555 3667777776663 222221 222 224555666666666555554443
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.47 E-value=5.8e+02 Score=27.67 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 315 AASISKLQREEAKITAWENLQRAK 338 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAK 338 (415)
+........|..+++.=+..|+++
T Consensus 174 ~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 174 AAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555444444443
No 111
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=34.31 E-value=4.9e+02 Score=27.45 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 014969 318 ISKLQREEAKITA 330 (415)
Q Consensus 318 ~~R~qREEaKI~A 330 (415)
..+|++|+.+-+.
T Consensus 152 L~KFkqE~kr~t~ 164 (340)
T KOG3756|consen 152 LQKFKQESKRATE 164 (340)
T ss_pred HHHHHHHHHHHHH
Confidence 3477887777666
No 112
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=33.44 E-value=1.9e+02 Score=26.77 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014969 329 TAWENLQRAKAEAAIRKLEMKLEKERSY 356 (415)
Q Consensus 329 ~AWEN~QKAKAEA~mrKlE~KLEkkRA~ 356 (415)
++|-+..++++++++.+||.+|+.-+..
T Consensus 2 ~~w~~~~~~~~~~~~~~Le~elk~~~~n 29 (177)
T PF10602_consen 2 EEWIEETKAKNAEELEKLEAELKDAKSN 29 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999875543
No 113
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=33.16 E-value=2.4e+02 Score=24.28 Aligned_cols=38 Identities=5% Similarity=0.068 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 014969 355 SYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAH 392 (415)
Q Consensus 355 A~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~e 392 (415)
..+.+....-|..+++.++..|..+-..-..++.....
T Consensus 46 ~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~ 83 (103)
T PRK08404 46 KKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV 83 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555544443
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.15 E-value=3.7e+02 Score=30.59 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYS---------TDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a---------~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
.+..++..+.++.+..|..-+..=. ..++++.+||.+|+..|.+. ++-+.++|...+++-++++..++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~e-e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELE-ELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555443211 22355556666666655444 334556666666666666555543
No 115
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.90 E-value=6.2e+02 Score=26.81 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------
Q 014969 311 LSEVAASISKLQREEAKITAWE---NLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEM------------ 375 (415)
Q Consensus 311 eaEkaK~~~R~qREEaKI~AWE---N~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEek------------ 375 (415)
+.+..++..+++..+.+|...+ ...+......+..++.+++.....+.+. ..++..++....+.
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l-~~~l~~l~~~i~~l~~~i~~~~~~L~ 258 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI-KAEIEELTDELLNLVMDIEDPSAALN 258 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccHHHHHH
Q ss_pred -HHHHHHHhccchhhHHHHHHHhhccCCCCCCccccccC
Q 014969 376 -RISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413 (415)
Q Consensus 376 -RA~AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF~c~ 413 (415)
--..-++-..+..+.+.....+...+. |.+|+
T Consensus 259 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~------Cp~C~ 291 (562)
T PHA02562 259 KLNTAAAKIKSKIEQFQKVIKMYEKGGV------CPTCT 291 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCC
No 116
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=32.77 E-value=3.5e+02 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 014969 359 DKILNKLKLAQMKAQEMRISISAKQGQQLPKT 390 (415)
Q Consensus 359 EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka 390 (415)
..+..+...+++.++......+..+.+...++
T Consensus 83 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i 114 (158)
T PF03938_consen 83 QELQQKEQELQQFQQQAQQQLQQEEQELLQPI 114 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 117
>PRK13665 hypothetical protein; Provisional
Probab=32.68 E-value=70 Score=32.89 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDK 360 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EK 360 (415)
+|..+|||.++-.+.|.|+.|+.+.-+
T Consensus 234 Lq~dQAEADk~iAqAkAEeRRAmAvA~ 260 (316)
T PRK13665 234 LQTDQAEADKRIAQAKAEERRAMAVAL 260 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888776643
No 118
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.13 E-value=4.6e+02 Score=25.07 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRA------------------KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEM 375 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKA------------------KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEek 375 (415)
.-....+|...+..|..||+.=+. ..+..+..++..++.. ...++++..+|...+++-++.
T Consensus 54 ~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~-~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 54 KKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV-EETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888889874332 2234444444445443 245566777777777666666
Q ss_pred HHHH
Q 014969 376 RISI 379 (415)
Q Consensus 376 RA~A 379 (415)
|+.-
T Consensus 133 k~k~ 136 (219)
T TIGR02977 133 RARQ 136 (219)
T ss_pred HHHH
Confidence 5543
No 119
>PTZ00491 major vault protein; Provisional
Probab=31.83 E-value=3.5e+02 Score=31.82 Aligned_cols=56 Identities=25% Similarity=0.162 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014969 320 KLQREEAKITAWENLQRAKAEAAI----RKLE----MKLEKERSYSTDKILNKLKLAQMKAQEM 375 (415)
Q Consensus 320 R~qREEaKI~AWEN~QKAKAEA~m----rKlE----~KLEkkRA~a~EKm~NKLa~a~rkAEek 375 (415)
+.=..+++..|=|..-.|||||+- .++| ++.-++|+++++-..+-.-...+++.+.
T Consensus 700 ~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~~ 763 (850)
T PTZ00491 700 KLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQEL 763 (850)
T ss_pred HHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHHH
Confidence 334446666677766666655543 3444 3344677777766665555444444443
No 120
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=31.56 E-value=3.9e+02 Score=26.29 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Q 014969 358 TDKILNKLKLA-QMKAQEMRISIS 380 (415)
Q Consensus 358 ~EKm~NKLa~a-~rkAEekRA~Ae 380 (415)
-+.|+++|.+- ..+.++.|...+
T Consensus 186 s~~~k~El~rFe~er~~dfk~~l~ 209 (234)
T cd07664 186 SKTIRKEVGRFEKERVKDFKTVII 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 223444444433
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.55 E-value=5.2e+02 Score=25.86 Aligned_cols=43 Identities=5% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHhhccCC
Q 014969 360 KILNKLKLAQMKAQEMRISISAKQ---GQQLPKTAHKAAFFHKHGP 402 (415)
Q Consensus 360 Km~NKLa~a~rkAEekRA~AeAkr---~eq~~Ka~eKA~~iR~TGk 402 (415)
.+++++..++...+..+......+ .+...++.+....++..|+
T Consensus 114 ~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 114 ELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332222 2222344556666776554
No 122
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=31.34 E-value=1.9e+02 Score=29.30 Aligned_cols=7 Identities=43% Similarity=0.283 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 014969 369 QMKAQEM 375 (415)
Q Consensus 369 ~rkAEek 375 (415)
|+|.||+
T Consensus 307 QrK~eeK 313 (321)
T PF07946_consen 307 QRKYEEK 313 (321)
T ss_pred HHHHHHH
Confidence 3344433
No 123
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.01 E-value=3e+02 Score=26.10 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014969 340 EAAIRKLEMKLEKERSYSTDKILNKLKLA 368 (415)
Q Consensus 340 EA~mrKlE~KLEkkRA~a~EKm~NKLa~a 368 (415)
|.--|+.+.+.+..+..+.+++...|=-+
T Consensus 50 eN~rkR~~ke~~~~~~~a~~~~~~~LLpv 78 (178)
T PRK14161 50 DNTRKRLEKARDEAKDYAIATFAKELLNV 78 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33456667777777777777777665443
No 124
>PRK13665 hypothetical protein; Provisional
Probab=30.99 E-value=1.5e+02 Score=30.71 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014969 332 ENLQRAKAEAAIRKLEMK-LEK-ERSYSTDKILNKLKLAQMKAQEMRISISAKQG 384 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~K-LEk-kRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~ 384 (415)
-+.+-|+|+|+.|+.+.. .|+ |+++ .+.|+-|+ +.-.||-=+|.++|-|.
T Consensus 241 ADk~iAqAkAEeRRAmAvA~EQEmkA~-v~emrAkv--VeAeaeVP~Ama~A~r~ 292 (316)
T PRK13665 241 ADKRIAQAKAEERRAMAVALEQEMKAK-VQEMRAKV--VEAEAEVPLAMAEALRS 292 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh--hhhhhhchHHHHHHHHc
Confidence 345666777777666533 232 2222 22233222 23345555555555443
No 125
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=30.24 E-value=4.6e+02 Score=28.21 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQ-RAKAEAAIRKLEMKLEK---ERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~Q-KAKAEA~mrKlE~KLEk---kRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
..-+|+..++..++.+|.-=|..| .|--|++|.+.+.+|+- .-+++.-....+|+.+++.---+.+.|||-
T Consensus 240 lqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~ 314 (428)
T KOG2668|consen 240 LQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAE 314 (428)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888888888777654 34456777777777652 234555555556666655555555444443
No 126
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.92 E-value=2e+02 Score=25.98 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=28.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014969 308 SLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYST 358 (415)
Q Consensus 308 AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~ 358 (415)
+|| -|++...+|+-..|....+.||+++.- ...++-||-.|-+.|+++.
T Consensus 22 ~We-iERaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 22 QWE-IERAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 454 345666666666666666666666543 4455556665555555543
No 127
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=29.80 E-value=3.3e+02 Score=31.45 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHH-Hhccch
Q 014969 310 DLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDK-ILNKLKLAQMKAQEMRISISA-KQGQQL 387 (415)
Q Consensus 310 EeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EK-m~NKLa~a~rkAEekRA~AeA-kr~eq~ 387 (415)
||++++|...+.++.+.| |-.++-|-|-+-++-+++++|-+-+-..+ ++.+-..++++-++.|-.++. ...+++
T Consensus 290 eE~~kekee~Klekd~KK----qqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E 365 (811)
T KOG4364|consen 290 EENNKEKEETKLEKDIKK----QQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQE 365 (811)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q ss_pred hhHHHHHHHhhc
Q 014969 388 PKTAHKAAFFHK 399 (415)
Q Consensus 388 ~Ka~eKA~~iR~ 399 (415)
.+....++.|-+
T Consensus 366 ~rkkr~~aei~K 377 (811)
T KOG4364|consen 366 LRKKRHEAEIGK 377 (811)
T ss_pred HHHHHHHHHHHh
No 128
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.86 E-value=3.6e+02 Score=23.51 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014969 332 ENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQM 370 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~r 370 (415)
|..++.+||....+++.+||..=+.+.|-..+-++.+++
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 44 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADARR 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999887776665553
No 129
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=28.73 E-value=2.5e+02 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKI 361 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm 361 (415)
+.+.+.++.+..+.++|+++.+.+
T Consensus 10 ~~~~~r~~~~~~~~~~r~eA~~~~ 33 (151)
T PF11875_consen 10 EIEEQREKNKEEIAEKRAEAESAI 33 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666777777777766544
No 130
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.69 E-value=4.8e+02 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 014969 319 SKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKIL 362 (415)
Q Consensus 319 ~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~ 362 (415)
..+..-...|+.=+..+-+...++..++..++|+.+.+..+.|.
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666777777777777777777777776666543
No 131
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.64 E-value=2.8e+02 Score=25.72 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 014969 320 KLQREEAKIT 329 (415)
Q Consensus 320 R~qREEaKI~ 329 (415)
|......++.
T Consensus 119 r~~~li~~l~ 128 (192)
T PF05529_consen 119 RVHSLIKELI 128 (192)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 132
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=28.48 E-value=1.5e+02 Score=27.35 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 014969 342 AIRKLEMKLEKERSYSTDKIL 362 (415)
Q Consensus 342 ~mrKlE~KLEkkRA~a~EKm~ 362 (415)
-+...+.+.++...++.++..
T Consensus 22 il~~A~~~a~~i~~~a~~~a~ 42 (198)
T PRK03963 22 ILEEAQKEAEKIKEEARKRAE 42 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 133
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=28.45 E-value=5.1e+02 Score=26.52 Aligned_cols=39 Identities=33% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014969 321 LQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD 359 (415)
Q Consensus 321 ~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~E 359 (415)
-+|..+-|.|=.+.|.||+-.+-+-.|.+-||+-++..+
T Consensus 209 TerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~ 247 (322)
T KOG2962|consen 209 TERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIED 247 (322)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455566777777777777776666666666665554443
No 134
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=28.28 E-value=1.3e+02 Score=31.12 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 014969 366 KLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 366 a~a~rkAEekRA~AeAkr~eq 386 (415)
+.+.+.|+..||..+|+..+.
T Consensus 262 AeA~~~a~i~~aegeA~a~~~ 282 (334)
T PRK11029 262 AEAERQGRIMRGEGDAEAAKL 282 (334)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 445555555555555554443
No 135
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=27.98 E-value=6e+02 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHH
Q 014969 322 QREEAKITAWENLQRAKAEAAIRKLEMK-LEKERSYSTDK 360 (415)
Q Consensus 322 qREEaKI~AWEN~QKAKAEA~mrKlE~K-LEkkRA~a~EK 360 (415)
.+--...+.|||.+++-..+++++.++. .|..-.++.++
T Consensus 126 ~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~ 165 (218)
T cd07663 126 YRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQK 165 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4445567889999988777777766654 55555555333
No 136
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=27.89 E-value=5.3e+02 Score=24.97 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014969 365 LKLAQMKAQ 373 (415)
Q Consensus 365 La~a~rkAE 373 (415)
++.+++.++
T Consensus 55 i~~A~~eae 63 (207)
T PRK01005 55 IRSAEETAD 63 (207)
T ss_pred HHHHHHHHH
Confidence 333333333
No 137
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=27.82 E-value=3.5e+02 Score=24.79 Aligned_cols=16 Identities=44% Similarity=0.432 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014969 325 EAKITAWENLQRAKAE 340 (415)
Q Consensus 325 EaKI~AWEN~QKAKAE 340 (415)
+++-++=+=...|+.+
T Consensus 69 ~Ar~~a~~Ii~~A~~~ 84 (161)
T COG0711 69 EAREQASEIIEQAKKE 84 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444443333333333
No 138
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.62 E-value=2.5e+02 Score=29.30 Aligned_cols=20 Identities=50% Similarity=0.529 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014969 335 QRAKAEAAIRKLEMKLEKER 354 (415)
Q Consensus 335 QKAKAEA~mrKlE~KLEkkR 354 (415)
+..+++.++.+++.+||+..
T Consensus 250 ~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 250 KLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 34566667777777776644
No 139
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.48 E-value=5e+02 Score=25.71 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014969 335 QRAKAEAAIRKLEMKLEKERS---YSTDKILNKLKLAQM-KAQEMRISISA 381 (415)
Q Consensus 335 QKAKAEA~mrKlE~KLEkkRA---~a~EKm~NKLa~a~r-kAEekRA~AeA 381 (415)
|-..|+.+++.+|.+++.-+. ..-+.|+.+|.+-++ +++++|...+.
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~ 210 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555443332 234555555555443 45555555444
No 140
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.12 E-value=8.6e+02 Score=27.87 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred cccccccccccc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHH
Q 014969 298 YQNVTGTCAPSL---------DLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSY------STDKIL 362 (415)
Q Consensus 298 kk~~~eaka~AW---------EeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~------a~EKm~ 362 (415)
.+..-|..++-+ |-+| -|..|-+..|.+|.--+..-|.| |.+++.+|.+++..|-. -.|-++
T Consensus 517 ~r~~ee~~aar~~~~~~~~r~e~~e--~~r~r~~~lE~E~~~lr~elk~k-ee~~~~~e~~~~~lr~~~~e~~~~~e~L~ 593 (697)
T PF09726_consen 517 ARKEEEEKAARALAQAQATRQECAE--SCRQRRRQLESELKKLRRELKQK-EEQIRELESELQELRKYEKESEKDTEVLM 593 (697)
T ss_pred HHhHHHHhhhhccccchhccchhHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHHHHHHHH---------------------HHHHHHHHH------HhccchhhHHHHHHHhhccCCCCCCccccccCCC
Q 014969 363 NKLKLAQMKA---------------------QEMRISISA------KQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHHT 415 (415)
Q Consensus 363 NKLa~a~rkA---------------------EekRA~AeA------kr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF~c~a~ 415 (415)
..|+.+|-|. .+.|.+.|. +++.||...+.|.+.+-+-.--.++|++.+-+.+
T Consensus 594 ~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~ 673 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTP 673 (697)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCc
No 141
>PRK10332 hypothetical protein; Provisional
Probab=27.12 E-value=42 Score=29.70 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCcccCCCCCCCccccceeccccCCCCCCCCCcccccccccc
Q 014969 33 SPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICS 83 (415)
Q Consensus 33 SPgtpkGwsSERVp~~~~~~rR~~~~~~l~Pf~~GRtlPSKWeDAErWI~S 83 (415)
++.-|.||--||+.- ..++=+...+....|++ ..-...||+|+
T Consensus 62 ~~~~~~gWq~~~~~~-~~~gC~~itv~v~~P~~-------~~a~lsRw~C~ 104 (107)
T PRK10332 62 AISPPANWQVNRMQT-SQAGCVSISVTLVSPGG-------RQGQMTRLHCP 104 (107)
T ss_pred cCCCCCCceeeeeec-CCCCcEEEEEEEecCCC-------chhhceeeccC
Confidence 344569999999987 44556667677778988 46678899996
No 142
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.02 E-value=2.4e+02 Score=31.75 Aligned_cols=52 Identities=23% Similarity=0.120 Sum_probs=36.4
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 014969 301 VTGTCAPSLDLSEVAASISKLQREEAKITAWEN-----LQRAKAEAAIRKLEMKLEKER 354 (415)
Q Consensus 301 ~~eaka~AWEeaEkaK~~~R~qREEaKI~AWEN-----~QKAKAEA~mrKlE~KLEkkR 354 (415)
.+-.+.-.|+.- .|+.++++.+|..|++=-. .+-.+||++|+|-|..||...
T Consensus 551 klk~R~i~~~~I--ek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g~ 607 (691)
T KOG0338|consen 551 KLKNRNIPPEVI--EKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHGD 607 (691)
T ss_pred chhhcCCCHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Confidence 344556667754 5778888888888887543 344588888988888886543
No 143
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=26.17 E-value=5.2e+02 Score=23.76 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014969 313 EVAASISKLQREEAKITA 330 (415)
Q Consensus 313 EkaK~~~R~qREEaKI~A 330 (415)
|..++....+++-.+|.+
T Consensus 17 e~~~I~~ea~~~~~~i~~ 34 (188)
T PRK02292 17 RASEIRAEADEEAEEIIA 34 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 144
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=25.91 E-value=4.6e+02 Score=27.16 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccC
Q 014969 322 QREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHG 401 (415)
Q Consensus 322 qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TG 401 (415)
.+.+-|-.+.-|.++...+.+....+.+.++++..-++++..=.+.|.+..++.....+.+. .+...+....++-|
T Consensus 273 ~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~e~~~~~~~~~r~----~~~~~~~~~~~rlg 348 (387)
T PF07767_consen 273 KKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKEEEEREKRRERRK----RKKEKKKLKPKRLG 348 (387)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhccccccC
Confidence 33455666666777666666666667777777766666665544444444333333333222 44444555566666
Q ss_pred CC
Q 014969 402 PM 403 (415)
Q Consensus 402 k~ 403 (415)
+.
T Consensus 349 k~ 350 (387)
T PF07767_consen 349 KH 350 (387)
T ss_pred cc
Confidence 63
No 145
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.71 E-value=9.8e+02 Score=26.86 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014969 317 SISKLQREEAKITAWENLQ--RAKAEAAIRKLEMKLEKERSYSTDKILNKLKL 367 (415)
Q Consensus 317 ~~~R~qREEaKI~AWEN~Q--KAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~ 367 (415)
...|....|..|....... .-+...+++++..++|+..+...++++..+..
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~ 270 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQ 270 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433222 12333445555555666665555555544333
No 146
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=25.69 E-value=1.3e+02 Score=29.15 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=27.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 305 CAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKER 354 (415)
Q Consensus 305 ka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkR 354 (415)
.+..|.+.....|..|=+.++.+...|...-+.-.+.-.++.+.++|+.+
T Consensus 113 ~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k 162 (225)
T PF01086_consen 113 AIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNK 162 (225)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667776666666666666666666644433333333444444444443
No 147
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.64 E-value=6e+02 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014969 320 KLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSY 356 (415)
Q Consensus 320 R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~ 356 (415)
.-++.|.+|..= ...+.+.|.+|.++|.||...+..
T Consensus 111 ~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 111 ERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444444433 335567788888888886665543
No 148
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=25.52 E-value=4.4e+02 Score=26.66 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAI-RKLEMKLEKERSYSTDKILNKLKLAQMKAQ 373 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~m-rKlE~KLEkkRA~a~EKm~NKLa~a~rkAE 373 (415)
..+.||..++-.+...|.+=|..++.+..-++ ++++.+.-+.|+..-.++.++|....+...
T Consensus 118 ~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKfgKqvQ~ek~~eR~keKk~~le~Ik~~kK~~~ 180 (271)
T PF05890_consen 118 EHMEKVRQKLLKEQKRIEASEEARKQRELKKFGKQVQVEKLQERAKEKKEMLEKIKKWKKKRK 180 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45678888888888888888777777665555 333333334444444455666655555544
No 149
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=25.31 E-value=2.7e+02 Score=26.31 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 014969 366 KLAQMKAQ 373 (415)
Q Consensus 366 a~a~rkAE 373 (415)
+.+++.|+
T Consensus 51 ~kAe~ea~ 58 (198)
T PRK01558 51 AKAEKEAN 58 (198)
T ss_pred HHHHHHHH
Confidence 33443333
No 150
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=8.7e+02 Score=27.13 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 014969 317 SISKLQREE 325 (415)
Q Consensus 317 ~~~R~qREE 325 (415)
...||+-+.
T Consensus 151 q~arYqD~l 159 (630)
T KOG0742|consen 151 QRARYQDKL 159 (630)
T ss_pred HHHHHHHHH
Confidence 334554443
No 151
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=24.99 E-value=2.2e+02 Score=28.20 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccC
Q 014969 341 AAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHG 401 (415)
Q Consensus 341 A~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TG 401 (415)
+.+..|-.++.....+...+..+++...+. .--....+++.+..+|+++.+++|
T Consensus 3 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 3 ALLAELISKSSEESLKSKKEQIERASEAQE-------KKAEEKAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555555555555555555444443 111222334445566666666653
No 152
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=1.9e+02 Score=31.98 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014969 331 WENLQRAKAEAAIRKLEMKLEKERSYS 357 (415)
Q Consensus 331 WEN~QKAKAEA~mrKlE~KLEkkRA~a 357 (415)
|+..||.+++..++|++..++.||.++
T Consensus 400 ~~~~k~~~~~~~~ek~~~~~~~Kk~eA 426 (546)
T KOG0718|consen 400 LLKRKKRERLLRREKLKDSVEAKKVEA 426 (546)
T ss_pred HHhhHhHHHHHHHHHhhhHHHHHHHHH
Confidence 556677778888888888877777554
No 153
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.43 E-value=7.4e+02 Score=29.56 Aligned_cols=34 Identities=6% Similarity=0.034 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 014969 355 SYSTDKILNKLKLAQMKAQEMRISISAKQGQQLP 388 (415)
Q Consensus 355 A~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~ 388 (415)
+..+|++.+..-.+..|.|+.+...+.-+++.+.
T Consensus 472 ~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 472 NDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665555554433
No 154
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.38 E-value=2.9e+02 Score=26.92 Aligned_cols=60 Identities=23% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 322 QREEAKITAWENLQRA-KAEAAIRKLEMKLEKERSY------STDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 322 qREEaKI~AWEN~QKA-KAEA~mrKlE~KLEkkRA~------a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
|-+..++.+=.+.|.. |||++..++-.||+..|.. -++-|...++.|+-.-...++.-.+
T Consensus 114 Qa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~~~a 180 (191)
T COG4420 114 QAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEALRRA 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHHHHH
Confidence 4456677777777765 8999999999999999988 5666666666655444443333333
No 155
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.03 E-value=5.5e+02 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 014969 339 AEAAIRKLEMKLE 351 (415)
Q Consensus 339 AEA~mrKlE~KLE 351 (415)
|+.+++++|.+++
T Consensus 150 A~~K~~~ae~~~~ 162 (241)
T cd07656 150 AERKLKEAEKQEE 162 (241)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555665555
No 156
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=1.7e+02 Score=31.71 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 014969 345 KLEMKLEKERSYSTDKILNKLKLAQ 369 (415)
Q Consensus 345 KlE~KLEkkRA~a~EKm~NKLa~a~ 369 (415)
.+..|-++.|.+..|++.+.+..++
T Consensus 363 ~~k~kt~~~RQ~~~e~~~K~th~~r 387 (440)
T KOG2357|consen 363 DAKAKTDKNRQRVEEEFLKLTHAAR 387 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344555566666666655544433
No 157
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=23.85 E-value=1.7e+02 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014969 343 IRKLEMKLEKERSYSTDKILNKLKLAQMKAQE 374 (415)
Q Consensus 343 mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEe 374 (415)
-++.+..|.++|.--.+.|..+|..|...|..
T Consensus 8 k~~k~eElkrlK~lK~~Ei~~kl~kik~~~G~ 39 (101)
T PF05178_consen 8 KQEKEEELKRLKNLKRKEIEEKLEKIKEVAGL 39 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445666677777777788888888887764
No 158
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.57 E-value=8.6e+02 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 014969 348 MKLEKERSYSTDKILNKLKLAQMKA 372 (415)
Q Consensus 348 ~KLEkkRA~a~EKm~NKLa~a~rkA 372 (415)
.+|+.+.-+..+-++++++.+.++-
T Consensus 121 ~~L~~~~~e~~~~lq~~~e~~~kkr 145 (438)
T COG4487 121 KELDELSKELQKQLQNTAEIIEKKR 145 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443
No 159
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.44 E-value=4.8e+02 Score=25.38 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=42.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014969 305 CAPSLDLSEVAASISKLQREEAKITAWE-NLQRAKAE--AAIRKLEMKLEKERSYSTDKILNKLKLA 368 (415)
Q Consensus 305 ka~AWEeaEkaK~~~R~qREEaKI~AWE-N~QKAKAE--A~mrKlE~KLEkkRA~a~EKm~NKLa~a 368 (415)
.-.+.++.+...+..+....++++..|. .+.++.|+ .--++++.+.+..+..+.+++...|=-+
T Consensus 38 ~~~~~~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV 104 (199)
T PRK14144 38 QEPALGHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPV 104 (199)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455666666777777777777777754 34455444 3456677788888888888887766443
No 160
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=23.38 E-value=2.5e+02 Score=31.48 Aligned_cols=86 Identities=16% Similarity=0.007 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHH-HHHHHHHHHHHHHHHHHHHHhccchhh
Q 014969 313 EVAASISKLQRE-EAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD-KIL-NKLKLAQMKAQEMRISISAKQGQQLPK 389 (415)
Q Consensus 313 EkaK~~~R~qRE-EaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~E-Km~-NKLa~a~rkAEekRA~AeAkr~eq~~K 389 (415)
|..|+..||..- +.+-+.|+-.|+-|+|-+-+-.+++-+++|++.-. |.- .+++...+-.+-+++.++..|....-=
T Consensus 414 es~k~~~ry~~~sDvr~QLrflEqldk~E~Erk~~~ere~l~raks~~nkeD~eq~r~kakake~qa~~~~~~r~rdanl 493 (563)
T KOG2341|consen 414 ESEKSRERYEIISDVRRQLRFLEQLDKAEEERKESREREELLRAKSRSNKEDPEQLRMKAKAKEMQAAEALQKRQRDANL 493 (563)
T ss_pred HHhhccchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccChHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence 334555555443 66667888888888888887776666666542211 111 122233333333445556666666555
Q ss_pred HHHHHHHhh
Q 014969 390 TAHKAAFFH 398 (415)
Q Consensus 390 a~eKA~~iR 398 (415)
++..|-..|
T Consensus 494 ~A~aai~~~ 502 (563)
T KOG2341|consen 494 MALAAISPR 502 (563)
T ss_pred hhhhhcCCc
Confidence 566666555
No 161
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=2.4e+02 Score=27.85 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 339 AEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISIS 380 (415)
Q Consensus 339 AEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~Ae 380 (415)
+|++|||+|. +.+-|.++|...+.+-||||-.-|
T Consensus 139 ~E~elrrLed--------~~~sI~~e~~YLr~REeemr~~ne 172 (210)
T KOG1691|consen 139 LEVELRRLED--------LVESIHEEMYYLREREEEMRNTNE 172 (210)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6778888864 566788999999999999997644
No 162
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.15 E-value=8.2e+02 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhc
Q 014969 340 EAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHK 399 (415)
Q Consensus 340 EA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~ 399 (415)
+.+....+.+|+.++.+ +|.+..+|+.+++...+.+....+-+++ ..+++.+-.+|.+
T Consensus 192 e~eke~~~r~l~~~~~E-Le~~~EeL~~~Eke~~e~~~~i~e~~~r-l~~l~~~~~~l~k 249 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEE-LEELEEELKQKEKEVKEIKERITEMKGR-LGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33333444444444433 3444566666666666666655544333 2334444444433
No 163
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.13 E-value=1.9e+02 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQ 385 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~e 385 (415)
+|.-+|||.+.-.+.|.|+.|+.+...-+ ..+.+.|||||++-+...+
T Consensus 233 lqteqa~adk~iaqakaeerramava~eq----emrarveemrakvveaeae 280 (328)
T COG4864 233 LQTEQAEADKNIAQAKAEERRAMAVALEQ----EMRARVEEMRAKVVEAEAE 280 (328)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc
No 164
>PF10940 DUF2618: Protein of unknown function (DUF2618); InterPro: IPR021237 This bacterial family of proteins has no known function. The sequences within the family are highly conserved.
Probab=22.93 E-value=27 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHhhccCCC--CCCccccccCCC
Q 014969 393 KAAFFHKHGPM--SSFRSCFTCHHT 415 (415)
Q Consensus 393 KA~~iR~TGk~--Ps~~gCF~c~a~ 415 (415)
-.++||+|-++ |+...||..|-|
T Consensus 5 lMaHIRRtrHiMmpshR~~Fd~~~f 29 (40)
T PF10940_consen 5 LMAHIRRTRHIMMPSHRSCFDFSFF 29 (40)
T ss_pred HHHHHHhhhhhhchhhhcccchhhh
Confidence 34678888885 899999987754
No 165
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.91 E-value=5.6e+02 Score=22.99 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhccch
Q 014969 368 AQMKAQEMRISISAKQGQQL 387 (415)
Q Consensus 368 a~rkAEekRA~AeAkr~eq~ 387 (415)
++...+..|..+...-.+++
T Consensus 103 a~~~I~~ek~~a~~el~~~~ 122 (159)
T PRK09173 103 AEQKIAQAETDAINAVRSSA 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333434433333333
No 166
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.62 E-value=5.1e+02 Score=25.03 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014969 313 EVAASISKLQREEAKITAWEN-LQ--RAKAEAAIRKLEMKLEKERSYSTDKILNKLKLA 368 (415)
Q Consensus 313 EkaK~~~R~qREEaKI~AWEN-~Q--KAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a 368 (415)
+...+..+....+.+|..+++ +. .|-.+.--|+.+.+.+..+..+.+++...|=-+
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV 99 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPA 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334555566666666666654 22 344455567778888888888888887766443
No 167
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=22.59 E-value=5e+02 Score=26.88 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 014969 366 KLAQMKAQEMRISISA 381 (415)
Q Consensus 366 a~a~rkAEekRA~AeA 381 (415)
..++-.|+..+.-+++
T Consensus 271 ~~aegeA~a~~~~~~a 286 (334)
T PRK11029 271 MRGEGDAEAAKLFADA 286 (334)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3344444444443333
No 168
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=22.18 E-value=6.6e+02 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhccc
Q 014969 371 KAQEMRISISAKQGQQ 386 (415)
Q Consensus 371 kAEekRA~AeAkr~eq 386 (415)
+..+-+.....+..++
T Consensus 105 k~~~~~~~~~~~~~e~ 120 (170)
T COG2825 105 KQQEYEKDLNRREAEE 120 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 169
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.11 E-value=4.6e+02 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhH
Q 014969 336 RAKAEAAIRKLEMKLEKERSY 356 (415)
Q Consensus 336 KAKAEA~mrKlE~KLEkkRA~ 356 (415)
+++.+.++.+.+.+.++.+++
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e 88 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSE 88 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 170
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=21.91 E-value=3.9e+02 Score=23.50 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 014969 345 KLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKA 394 (415)
Q Consensus 345 KlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA 394 (415)
+.-.++|.+|. +.|.++.||+.|+ |.|++..+-|.+...|....|
T Consensus 50 ~~i~~~ee~R~-~~E~lQdkL~qi~----eAR~AlDalR~eH~~klrr~a 94 (96)
T PF12210_consen 50 KYIQEQEEKRV-YYEGLQDKLAQIK----EARAALDALREEHREKLRRQA 94 (96)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 33345555554 5688999988775 677777777777666655444
No 171
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.82 E-value=6.2e+02 Score=24.21 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKE 353 (415)
Q Consensus 338 KAEA~mrKlE~KLEkk 353 (415)
+....++++|.+++.+
T Consensus 107 ~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555566555544
No 172
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.80 E-value=6.9e+02 Score=30.82 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccCC
Q 014969 330 AWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGP 402 (415)
Q Consensus 330 AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TGk 402 (415)
+=|+.++-+++++++.++++||-. ++....++....+...-|...++....-..+ .+++.++|.+.+
T Consensus 504 ~~~~~~~~~l~~~~~~~~eele~~-----q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e-~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 504 SEEEAKKRKLEALVRQLEEELEDA-----QKKNDNAADSLEKVNSLRKQLEEAELDMRAE-SEDAGKLRKHSK 570 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh-HHHHhhHhhhhh
Confidence 344555566666666666555543 2222233333344444444444444333332 335556665544
No 173
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.77 E-value=1.1e+03 Score=26.41 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 014969 341 AAIRKLEMKLEKERSYSTDKIL 362 (415)
Q Consensus 341 A~mrKlE~KLEkkRA~a~EKm~ 362 (415)
..|..|..+.|+.|.-.++++.
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r 429 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYR 429 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444556666655555543
No 174
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.74 E-value=3.7e+02 Score=23.89 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
.+.++.+.+|++.+.+|+.-|....+++...-..+...++.=|
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~ 67 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQ 67 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999988887776666655555443
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=4.7e+02 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014969 328 ITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLA 368 (415)
Q Consensus 328 I~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a 368 (415)
+..|.+.+--.-+.++.+|+.+|+.++.. .|.+.++|+.+
T Consensus 468 ~~~~~~rei~~~~~~I~~L~~~L~e~~~~-ve~L~~~l~~l 507 (652)
T COG2433 468 DKVRKDREIRARDRRIERLEKELEEKKKR-VEELERKLAEL 507 (652)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44444444444444555555555443322 23344444433
No 176
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=6.6e+02 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 014969 318 ISKLQREEAKITAWENLQRAKAEAAIRK---LEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHK 393 (415)
Q Consensus 318 ~~R~qREEaKI~AWEN~QKAKAEA~mrK---lE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eK 393 (415)
..|-+++...=..||..+++.-|++-++ +|.+|||-|---.+|=-.+-+.+.++ |..|...|.+|..+-.++..+
T Consensus 342 reree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~r-Eaar~ElEkqRqlewErar~q 419 (1118)
T KOG1029|consen 342 REREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERR-EAAREELEKQRQLEWERARRQ 419 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
No 177
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=21.43 E-value=6e+02 Score=22.78 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014969 328 ITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKA 372 (415)
Q Consensus 328 I~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkA 372 (415)
-..|-++.| |++.+-+....++++.+..+.+.+...+...+..-
T Consensus 114 ~~~~~~~~k-k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 114 QELWAKLAK-KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345666666 88888888888888888888888888887655544
No 178
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.34 E-value=2.4e+02 Score=27.33 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQM 370 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~r 370 (415)
-+.+.++..++.++|++.. .++.+.+.+..+|.
T Consensus 102 e~~~~e~~elr~~~~~l~~-~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLEN-AIAELTKFFSQLHS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3344444455555555443 66777777777773
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.27 E-value=7.6e+02 Score=27.38 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=2.7
Q ss_pred CCCccc
Q 014969 89 GLGLTN 94 (415)
Q Consensus 89 ~~~r~s 94 (415)
|.|+|+
T Consensus 38 g~GKtt 43 (650)
T TIGR03185 38 GAGKTT 43 (650)
T ss_pred CCCHHH
Confidence 334544
No 180
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=21.11 E-value=4.6e+02 Score=21.39 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014969 362 LNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 362 ~NKLa~a~rkAEekRA~AeAk 382 (415)
.+-|..++..++..+..+-..
T Consensus 49 ~~ii~~Ak~ei~~e~~~a~~e 69 (85)
T TIGR02926 49 EEIIKEAEEEIEKEAEKIREE 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 181
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.94 E-value=8.1e+02 Score=24.11 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRA-----------KAEAAIRKLEMKLEKERS------YSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKA-----------KAEA~mrKlE~KLEkkRA------~a~EKm~NKLa~a~rkAEekR 376 (415)
......+|++....+..||+.=+. +|=.+++.+|..++..+. ...++|+..|...+.|-.+.|
T Consensus 54 ~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 54 QKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777778888888874332 222334444444444432 345667777777776666666
Q ss_pred HHHHHH-hccchhhHHHHHHHhhccC
Q 014969 377 ISISAK-QGQQLPKTAHKAAFFHKHG 401 (415)
Q Consensus 377 A~AeAk-r~eq~~Ka~eKA~~iR~TG 401 (415)
+.-+.- -.....++.++.......+
T Consensus 134 ~~~~~l~ar~~~akA~~~v~~~~~~~ 159 (225)
T COG1842 134 AKKEALKARKAAAKAQEKVNRSLGGG 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 554332 2233445555555444433
No 182
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.75 E-value=6.3e+02 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014969 311 LSEVAASISKLQREEAKITAWENLQ---RAKAEAAIRKLEMKLEKERSYSTDKILNKLKL 367 (415)
Q Consensus 311 eaEkaK~~~R~qREEaKI~AWEN~Q---KAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~ 367 (415)
+.+...+..+....+.+|..|.+.- .|-.|.-.|+++.+.+..+..+.+++...|=-
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLp 90 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLP 90 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666677777777776543 33444556777888888888888888776543
No 183
>PF15392 Joubert: Joubert syndrome-associated
Probab=20.73 E-value=2.5e+02 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHH-Hhccchh
Q 014969 320 KLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD----------KILNKLKLAQMKAQEMRISISA-KQGQQLP 388 (415)
Q Consensus 320 R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~E----------Km~NKLa~a~rkAEekRA~AeA-kr~eq~~ 388 (415)
|-++|..+|++|=..| -...|...-.+|+.+|..-++ --.++|+..+|.-+||+-.... ...+.++
T Consensus 51 RtekERrEIq~WMkRK---rkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdRllLseH~s~Rvs 127 (329)
T PF15392_consen 51 RTEKERREIQAWMKRK---RKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDRLLLSEHYSRRVS 127 (329)
T ss_pred ccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999995544 233444444455555543322 2257788888888877644433 3333444
Q ss_pred hH
Q 014969 389 KT 390 (415)
Q Consensus 389 Ka 390 (415)
.|
T Consensus 128 QA 129 (329)
T PF15392_consen 128 QA 129 (329)
T ss_pred HH
Confidence 43
No 184
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=20.60 E-value=4.4e+02 Score=30.13 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDK 360 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EK 360 (415)
-|.|.+|+++|++|-+-|++++++
T Consensus 353 ~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555
No 185
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.55 E-value=3.8e+02 Score=32.26 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014969 316 ASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD 359 (415)
Q Consensus 316 K~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~E 359 (415)
-....++.+..++.+||.+.. +.+++.+.++.+|++.|++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 167 QSQALAEAQQQELVALEGLAA-ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888876654 4777888888888877776555
No 186
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.49 E-value=6.1e+02 Score=25.90 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014969 334 LQRAKAEAAIRKLEMKLEK 352 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEk 352 (415)
.+..+++.++++++.++|+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~ 45 (378)
T TIGR01554 27 KELTAAALEKEELETDVEK 45 (378)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 187
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=20.42 E-value=8.2e+02 Score=24.02 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHH----HHHHHHHHHHHHHHHHHHHHH
Q 014969 309 LDLSEVAASISKLQRE-EAKITAWENLQRAKAEAAIRKLEMK-----LEKERSYS----TDKILNKLKLAQMKAQEMRIS 378 (415)
Q Consensus 309 WEeaEkaK~~~R~qRE-EaKI~AWEN~QKAKAEA~mrKlE~K-----LEkkRA~a----~EKm~NKLa~a~rkAEekRA~ 378 (415)
|.+.++-++.+=+++. .-+..-+-.+.++|..-+-+-.|.+ .+++.... +||+++|+..++..++..+..
T Consensus 96 ~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~ 175 (242)
T cd07671 96 RQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERV 175 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
No 188
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=20.42 E-value=6.1e+02 Score=22.78 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQ 373 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAE 373 (415)
+..++++.++|..++..-+.+.+++...++..+..-+
T Consensus 13 ~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~ 49 (149)
T PF07352_consen 13 AELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIE 49 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 189
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.39 E-value=5.5e+02 Score=25.33 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014969 318 ISKLQREEAKITAW-ENLQRAKA--EAAIRKLEMKLEKERSYSTDKILNKLKLA 368 (415)
Q Consensus 318 ~~R~qREEaKI~AW-EN~QKAKA--EA~mrKlE~KLEkkRA~a~EKm~NKLa~a 368 (415)
..++...+.+|..+ +.+++++| +.-.|+++.+.+..+..+.+++...|=-+
T Consensus 46 ~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV 99 (214)
T PRK14163 46 TAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPV 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445555443 33344444 34467778888888888888888776443
No 190
>PRK11677 hypothetical protein; Provisional
Probab=20.37 E-value=4e+02 Score=24.39 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 334 LQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
.+..+.+.++++.+.+||+-|.+..+++...-..+...++.=|
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~ 71 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYR 71 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999988877777777766555
No 191
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.33 E-value=5.9e+02 Score=22.30 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=6.7
Q ss_pred cccchhhHHHH
Q 014969 306 APSLDLSEVAA 316 (415)
Q Consensus 306 a~AWEeaEkaK 316 (415)
-.+|.+-|+|.
T Consensus 51 g~~f~krE~A~ 61 (100)
T PF04568_consen 51 GGAFGKREAAQ 61 (100)
T ss_dssp CHHHHHHHHHH
T ss_pred CCccchHHHhh
Confidence 35677666554
No 192
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=20.33 E-value=2.1e+02 Score=29.73 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014969 333 NLQRAKAEAAIRKLE 347 (415)
Q Consensus 333 N~QKAKAEA~mrKlE 347 (415)
+.+.|+|+|+.|+..
T Consensus 237 Dk~iAqAkAEeRRA~ 251 (316)
T PF12127_consen 237 DKRIAQAKAEERRAM 251 (316)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555554
No 193
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.25 E-value=1.4e+02 Score=27.57 Aligned_cols=22 Identities=36% Similarity=0.364 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014969 334 LQRAKAEAAIRKLEMKLEKERS 355 (415)
Q Consensus 334 ~QKAKAEA~mrKlE~KLEkkRA 355 (415)
.|-||.+.++.|++.+||+...
T Consensus 66 AkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 66 AKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776543
No 194
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=20.15 E-value=3.5e+02 Score=26.27 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=4.3
Q ss_pred ccccccccCC
Q 014969 221 RRDMATQMSP 230 (415)
Q Consensus 221 ~RD~gTqMTP 230 (415)
.|++--+|+.
T Consensus 93 lR~vig~~~l 102 (262)
T cd03407 93 LRARIPKLTL 102 (262)
T ss_pred HHHHhcCccH
Confidence 3444444443
No 195
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.11 E-value=9e+02 Score=24.33 Aligned_cols=76 Identities=8% Similarity=-0.008 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHHhhccCCCCCCccccccC
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQ---QLPKTAHKAAFFHKHGPMSSFRSCFTCH 413 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~e---q~~Ka~eKA~~iR~TGk~Ps~~gCF~c~ 413 (415)
.++.+|.+.|.++|.-|-.+.+-|.|=|+..--.++-...-++|+..= ...-..+-...|...-.-..---||+|+
T Consensus 166 ~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~~~k~~fg~~ 244 (248)
T cd07619 166 ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPSYGKP 244 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccCCC
Confidence 346777888888887766667766666665555555555555554221 1111233333343332222234577775
No 196
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=20.08 E-value=7.1e+02 Score=25.53 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 014969 311 LSEVAAS 317 (415)
Q Consensus 311 eaEkaK~ 317 (415)
|+|++|+
T Consensus 187 E~EkTKl 193 (322)
T KOG2962|consen 187 EAEKTKL 193 (322)
T ss_pred HHHhhhh
Confidence 3444544
Done!