Query 014969
Match_columns 415
No_of_seqs 149 out of 236
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 83.0 5.6 0.00019 40.4 10.1 49 358-406 539-587 (597)
2 3na7_A HP0958; flagellar bioge 69.1 61 0.0021 30.1 12.3 13 401-413 192-205 (256)
3 2eqb_B RAB guanine nucleotide 65.3 60 0.0021 27.2 11.1 38 332-369 38-75 (97)
4 3mq7_A Bone marrow stromal ant 63.7 39 0.0013 29.3 8.9 59 328-386 35-101 (121)
5 1cii_A Colicin IA; bacteriocin 56.0 90 0.0031 32.9 11.5 63 313-376 350-418 (602)
6 3ni0_A Bone marrow stromal ant 55.1 71 0.0024 26.9 8.7 52 328-379 28-90 (99)
7 3ljm_A Coil Ser L9C; de novo d 54.4 15 0.00051 24.6 3.6 23 330-352 2-26 (31)
8 2zuo_A MVP, major vault protei 52.9 63 0.0022 36.0 10.3 44 304-347 711-754 (861)
9 3mq9_A Bone marrow stromal ant 52.8 1.2E+02 0.004 29.9 11.6 36 348-383 432-470 (471)
10 3viq_A SWI5-dependent recombin 47.1 57 0.002 28.0 7.3 61 335-395 8-68 (122)
11 3vkg_A Dynein heavy chain, cyt 45.0 1.2E+02 0.0041 38.6 12.1 67 314-382 1915-1981(3245)
12 3oja_A Leucine-rich immune mol 44.4 93 0.0032 30.8 9.4 63 314-381 412-474 (487)
13 2ocy_A RAB guanine nucleotide 37.3 2.3E+02 0.0078 25.4 11.2 38 332-369 70-107 (154)
14 2dfs_A Myosin-5A; myosin-V, in 36.8 2.2E+02 0.0076 32.2 11.9 17 338-354 981-997 (1080)
15 1f5n_A Interferon-induced guan 36.6 1.4E+02 0.0048 31.5 9.7 23 358-380 521-543 (592)
16 3f1i_H Hepatocyte growth facto 31.0 1.1E+02 0.0037 25.7 6.1 48 343-395 50-97 (98)
17 2y7c_A Type-1 restriction enzy 30.5 1.3E+02 0.0043 28.6 7.6 44 312-363 376-419 (464)
18 4efa_E V-type proton ATPase su 30.4 3.1E+02 0.011 24.8 10.2 64 311-374 29-93 (233)
19 3bas_A Myosin heavy chain, str 29.5 2.1E+02 0.0073 22.7 8.4 21 370-390 59-79 (89)
20 3etw_A Adhesin A; antiparallel 28.8 2.1E+02 0.0072 24.6 7.8 36 314-349 11-46 (119)
21 2qag_C Septin-7; cell cycle, c 28.3 12 0.00042 37.6 0.0 59 317-379 327-385 (418)
22 1f5n_A Interferon-induced guan 28.0 3.3E+02 0.011 28.7 10.8 29 9-37 40-71 (592)
23 3rk3_E Complexin-1; snare prot 27.5 2.2E+02 0.0074 22.1 6.9 25 338-362 27-51 (63)
24 2b5u_A Colicin E3; high resolu 27.0 3.2E+02 0.011 29.0 10.1 55 326-381 305-360 (551)
25 3oja_A Leucine-rich immune mol 26.5 4.6E+02 0.016 25.8 11.1 24 306-329 364-387 (487)
26 3mq7_A Bone marrow stromal ant 26.2 1.4E+02 0.005 25.8 6.3 7 343-349 73-79 (121)
27 2zuo_A MVP, major vault protei 25.8 5.2E+02 0.018 29.0 12.0 18 325-342 710-727 (861)
28 1kil_E Complexin I snare-compl 23.9 1.5E+02 0.0051 22.0 5.1 22 340-361 26-47 (49)
29 2qag_B Septin-6, protein NEDD5 23.8 17 0.00057 37.1 0.0 44 311-354 325-368 (427)
30 3kin_B Kinesin heavy chain; mo 23.4 97 0.0033 26.0 4.7 32 315-354 85-116 (117)
31 2p2u_A HOST-nuclease inhibitor 22.2 3.9E+02 0.013 23.6 8.7 40 337-376 26-65 (171)
32 3v6i_A V-type ATP synthase sub 22.0 3.8E+02 0.013 23.3 8.5 52 332-383 8-59 (187)
33 2f42_A STIP1 homology and U-bo 20.9 1.4E+02 0.0047 27.0 5.4 24 390-413 90-113 (179)
34 3a7p_A Autophagy protein 16; c 20.1 4.7E+02 0.016 23.4 9.9 33 338-371 79-111 (152)
35 2rdc_A Uncharacterized protein 20.1 2E+02 0.007 25.7 6.1 57 315-374 52-108 (153)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.00 E-value=5.6 Score=40.35 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccCCCCCC
Q 014969 358 TDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSF 406 (415)
Q Consensus 358 ~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~ 406 (415)
.+++.+++..++++-++++...++-+++-....++.-....++.+-|+.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4455566777777777777666555544433334445555566555543
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.11 E-value=61 Score=30.14 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=6.8
Q ss_pred CCCCC-CccccccC
Q 014969 401 GPMSS-FRSCFTCH 413 (415)
Q Consensus 401 Gk~Ps-~~gCF~c~ 413 (415)
|-+|- -.-|-+||
T Consensus 192 avv~v~~~~C~GC~ 205 (256)
T 3na7_A 192 SIVTIKKQACGGCF 205 (256)
T ss_dssp SEEECBTTBCTTTC
T ss_pred eEEEeeCCccCCCC
Confidence 33453 34577776
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.30 E-value=60 Score=27.16 Aligned_cols=38 Identities=32% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014969 332 ENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQ 369 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~ 369 (415)
|..++..||.+..+++.+||-.=+.+.+...+-++.++
T Consensus 38 E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 38 ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999998877666663
No 4
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.70 E-value=39 Score=29.32 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014969 328 ITAWENLQRAKAEAA-----IRKLEMKLEKERSY---STDKILNKLKLAQMKAQEMRISISAKQGQQ 386 (415)
Q Consensus 328 I~AWEN~QKAKAEA~-----mrKlE~KLEkkRA~---a~EKm~NKLa~a~rkAEekRA~AeAkr~eq 386 (415)
-++||.+..+.|+|. +..|-.-|+++++. -++++..+|....++-+++-+.+|..|.+-
T Consensus 35 TqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 35 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999888876 34455566766665 477888999999999888888877665443
No 5
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=56.00 E-value=90 Score=32.94 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 313 EVAASISKLQREEAKITAWENL------QRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 313 EkaK~~~R~qREEaKI~AWEN~------QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
|-.++..||.+-.++|..=|+- +.-....+.+..|..|+.+.. ..+.+.|.++.+.+|..|+.
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~k-ek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLK-EKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHH
Confidence 3345556666666666655543 334455566777777776653 34457888888876644444
No 6
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=55.14 E-value=71 Score=26.86 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHH
Q 014969 328 ITAWENLQRAKAEAAI-----RKLEMKLEKERSYS------TDKILNKLKLAQMKAQEMRISI 379 (415)
Q Consensus 328 I~AWEN~QKAKAEA~m-----rKlE~KLEkkRA~a------~EKm~NKLa~a~rkAEekRA~A 379 (415)
-+||+.+..+.|+|.- -.|-.-|+++++.. ++++..+|....++-++++..-
T Consensus 28 T~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 28 TRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999988863 44556677776654 7788899999998888887443
No 7
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=54.37 E-value=15 Score=24.57 Aligned_cols=23 Identities=43% Similarity=0.746 Sum_probs=13.8
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Q 014969 330 AWENLQR--AKAEAAIRKLEMKLEK 352 (415)
Q Consensus 330 AWEN~QK--AKAEA~mrKlE~KLEk 352 (415)
.||.+.| |..|.+++-+|.|||-
T Consensus 2 ewealekkcaalesklqalekklea 26 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655 4456666666666653
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=52.87 E-value=63 Score=36.05 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=21.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 304 TCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLE 347 (415)
Q Consensus 304 aka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE 347 (415)
+...|=|.+-.+|..++.+-|.+.|.+=-+.+.||++|+-.++|
T Consensus 711 a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 711 AMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 33344444444444445555555555544555555555444444
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.81 E-value=1.2e+02 Score=29.90 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 014969 348 MKLEKERSYSTDK---ILNKLKLAQMKAQEMRISISAKQ 383 (415)
Q Consensus 348 ~KLEkkRA~a~EK---m~NKLa~a~rkAEekRA~AeAkr 383 (415)
.-||++.+..+.| +-++|...+++-++.+|.++.+|
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456665554333 33556666666666666665544
No 10
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=47.15 E-value=57 Score=28.02 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 014969 335 QRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAA 395 (415)
Q Consensus 335 QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~ 395 (415)
++++.+++|+.++.+|+..+....=+-.|+.+.++..-+.+|.+...--.+=...+.++..
T Consensus 8 ~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~ 68 (122)
T 3viq_A 8 RRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIR 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888887777666667777777777777776665444333344444443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.99 E-value=1.2e+02 Score=38.57 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK 382 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk 382 (415)
...-.+||+.=..||..= +.|.++.+.++..++.+|++|..+ .++++.+|..-+..|+++++.+++.
T Consensus 1915 l~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~e-a~~~l~~i~~~~~~ae~~k~~v~~~ 1981 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQ-ANQKLKQMVQDQQAAEIKQKDAREL 1981 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555442 456667777777777888876554 4667777777778888887666543
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.45 E-value=93 Score=30.82 Aligned_cols=63 Identities=6% Similarity=0.023 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
..+...+|+.+.++.+. .+.++++.++++..++++.|. --++++..|..+...-+++++.-..
T Consensus 412 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHHH
Confidence 44555556655555443 444466666666655555555 4456666666666666676666543
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.27 E-value=2.3e+02 Score=25.36 Aligned_cols=38 Identities=32% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014969 332 ENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQ 369 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~ 369 (415)
|..++..||.+..++|.+||-.=+.+++...+=++.++
T Consensus 70 E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 107 (154)
T 2ocy_A 70 ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 107 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999998777666553
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.82 E-value=2.2e+02 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014969 338 KAEAAIRKLEMKLEKER 354 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkR 354 (415)
+++++++.+|.+++..+
T Consensus 981 ~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544433
No 15
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.56 E-value=1.4e+02 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014969 358 TDKILNKLKLAQMKAQEMRISIS 380 (415)
Q Consensus 358 ~EKm~NKLa~a~rkAEekRA~Ae 380 (415)
..-++..|+....|.|+-|....
T Consensus 521 ~~~~~e~~~ql~~kme~~~~~~~ 543 (592)
T 1f5n_A 521 ERSYQEHLKQLTEKMENDRVQLL 543 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554443
No 16
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=30.99 E-value=1.1e+02 Score=25.74 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 014969 343 IRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAA 395 (415)
Q Consensus 343 mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~ 395 (415)
+-+.-.++|.+|. +.|.++.||+.|+ |.|++..+-|.++..|..+.|+
T Consensus 50 Ll~~i~~~ee~R~-~yE~LQDkL~qi~----eAR~ALdaLR~eH~~Klrr~ae 97 (98)
T 3f1i_H 50 LLELLNQLDERRL-YYEGLQDKLAQIR----DARGALSALREEHREKLRRAAE 97 (98)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666554 4588899998775 6788888888877777766654
No 17
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=30.54 E-value=1.3e+02 Score=28.64 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014969 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILN 363 (415)
Q Consensus 312 aEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~N 363 (415)
.|..++.++++...++|.. .++++++...+|+..|..+++++..
T Consensus 376 ~EQ~~Iv~~l~~~~~~id~--------l~~~~~~~~~~l~~lk~sLL~~af~ 419 (464)
T 2y7c_A 376 KEQAEIVRRVEQLFAYADT--------IEKQVNNALARVNNLTQSILAKAFR 419 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555444433 3344445555677778888888753
No 18
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=30.45 E-value=3.1e+02 Score=24.84 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014969 311 LSEVAASISKLQRE-EAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQE 374 (415)
Q Consensus 311 eaEkaK~~~R~qRE-EaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEe 374 (415)
+.+...|..+.+.| +..+..=....+.+++..+.|.+.++|..+....-.+.|+.+..-..|.+
T Consensus 29 ~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~ 93 (233)
T 4efa_E 29 EEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSARE 93 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 19
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.55 E-value=2.1e+02 Score=22.73 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhccchhhH
Q 014969 370 MKAQEMRISISAKQGQQLPKT 390 (415)
Q Consensus 370 rkAEekRA~AeAkr~eq~~Ka 390 (415)
.-|+++++...+++.+-..++
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 345566665555554443333
No 20
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.84 E-value=2.1e+02 Score=24.59 Aligned_cols=36 Identities=28% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEMK 349 (415)
Q Consensus 314 kaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~K 349 (415)
...+.+-|++.+.+=.+==+.+++.||++-+++...
T Consensus 11 l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554455556666777766665443
No 21
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.26 E-value=12 Score=37.62 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 317 SISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISI 379 (415)
Q Consensus 317 ~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~A 379 (415)
...+++++|+.+..==..|...=|.++++.|.+|..++ +.+++.|...++.-|++|...
T Consensus 327 ~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~----~~~~~~l~~~~~~l~~~~~~~ 385 (418)
T 2qag_C 327 HVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRH----EQMKKNLEAQHKELEEKRRQF 385 (418)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333222333333344444444443322 233333444444444444433
No 22
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.01 E-value=3.3e+02 Score=28.72 Aligned_cols=29 Identities=7% Similarity=-0.066 Sum_probs=13.8
Q ss_pred hhccccccCCCCccccccccC---CCCCCCCC
Q 014969 9 KKSGVNNNNNNNNTSAEEHSD---TFPSPGAP 37 (415)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~g---~fpSPgtp 37 (415)
+|+=||.-|-|=.+.-..-.| .|+-|||+
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt 71 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV 71 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHhHcCCCCccccCCCC
Confidence 345566666665332111112 25666666
No 23
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=27.49 E-value=2.2e+02 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKIL 362 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~ 362 (415)
+-.++-+|+|.+-|+||..+-+||-
T Consensus 27 ~Rk~Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 27 ERKAKYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667888888888888877764
No 24
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=26.99 E-value=3.2e+02 Score=29.01 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=29.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969 326 AKITAW-ENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA 381 (415)
Q Consensus 326 aKI~AW-EN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeA 381 (415)
..=+.| -++--+.||+++.++..+|+.- -+.+++++.+++.+.+.-++.|+...|
T Consensus 305 r~~qew~~~hp~~~Aer~~e~a~ael~~a-~k~~a~~~er~~~t~~~~~~~~~~~~~ 360 (551)
T 2b5u_A 305 RRQQEWDATHPVEAAERNYERARAELNQA-NEDVARNQERQAKAVQVYNSRKSELDA 360 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 333455 2333445555555555555433 455566666666666666666666543
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.53 E-value=4.6e+02 Score=25.77 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=13.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH
Q 014969 306 APSLDLSEVAASISKLQREEAKIT 329 (415)
Q Consensus 306 a~AWEeaEkaK~~~R~qREEaKI~ 329 (415)
...+++.+......+.+++...+.
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~ 387 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELD 387 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566665555555555554444
No 26
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.18 E-value=1.4e+02 Score=25.81 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014969 343 IRKLEMK 349 (415)
Q Consensus 343 mrKlE~K 349 (415)
+++++.+
T Consensus 73 vqeLqgE 79 (121)
T 3mq7_A 73 VEELEGE 79 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 27
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=25.81 E-value=5.2e+02 Score=29.00 Aligned_cols=18 Identities=50% Similarity=0.344 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014969 325 EAKITAWENLQRAKAEAA 342 (415)
Q Consensus 325 EaKI~AWEN~QKAKAEA~ 342 (415)
++...+=|..-.|||||+
T Consensus 710 ~a~s~aves~g~a~AeA~ 727 (861)
T 2zuo_A 710 EAMSMAVESTGNAKAEAE 727 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHhhhcchhHHHHH
Confidence 444455555445555543
No 28
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.94 E-value=1.5e+02 Score=22.01 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 014969 340 EAAIRKLEMKLEKERSYSTDKI 361 (415)
Q Consensus 340 EA~mrKlE~KLEkkRA~a~EKm 361 (415)
.++-+|+|.+-|+||..+-+||
T Consensus 26 k~Kh~kmE~eRE~mRq~IRdKY 47 (49)
T 1kil_E 26 KAKYAKMEAEREVMRQGIRDKY 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888889888877776
No 29
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.79 E-value=17 Score=37.08 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 311 LSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKER 354 (415)
Q Consensus 311 eaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkR 354 (415)
+.++..+..+++++|+.+..==..|.+.-|+++++.|.+|..++
T Consensus 325 ~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~ 368 (427)
T 2qag_B 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKF 368 (427)
T ss_dssp --------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666665555444444555555666655554433
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.36 E-value=97 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKER 354 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkR 354 (415)
..+..+|+++..++.+ .+.++..+|.+|+++|
T Consensus 85 ~~l~~~~~~e~~~~~~--------L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKA--------LKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Confidence 3455677777776643 3467888888888887
No 31
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.19 E-value=3.9e+02 Score=23.62 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMR 376 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekR 376 (415)
+.+++++.++|..+....+.+.+++...++.++-..+...
T Consensus 26 a~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~ 65 (171)
T 2p2u_A 26 ATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELE 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555554444443
No 32
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=21.97 E-value=3.8e+02 Score=23.33 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014969 332 ENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQ 383 (415)
Q Consensus 332 EN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr 383 (415)
++.=.++|+.-+...+.+.++..+.+.++.....+.+.++++........+.
T Consensus 8 ~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~ 59 (187)
T 3v6i_A 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRA 59 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 33
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.90 E-value=1.4e+02 Score=26.98 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=14.5
Q ss_pred HHHHHHHhhccCCCCCCccccccC
Q 014969 390 TAHKAAFFHKHGPMSSFRSCFTCH 413 (415)
Q Consensus 390 a~eKA~~iR~TGk~Ps~~gCF~c~ 413 (415)
+-.++..-+....+|..+.|-=|+
T Consensus 90 l~~~~~~~~~~~~ip~~f~CPI~~ 113 (179)
T 2f42_A 90 LFSQVDEKRKKREIPDYLCGKISF 113 (179)
T ss_dssp HHHHHHHGGGCCCCCGGGBCTTTC
T ss_pred HHHHHhhhccccCCcHhhcccCcc
Confidence 334444445667788766676554
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.12 E-value=4.7e+02 Score=23.39 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014969 338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371 (415)
Q Consensus 338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rk 371 (415)
..+.+++.+++.|+- |.+.++.++.++...+..
T Consensus 79 ~l~~ki~dLeeel~e-K~K~~e~l~DEl~aLqlq 111 (152)
T 3a7p_A 79 SKEQEIRRLKEVIAL-KNKNTERLNAALISGTIE 111 (152)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344445555544443 334445555555544443
No 35
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=20.07 E-value=2e+02 Score=25.66 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQE 374 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEe 374 (415)
.++..+..++|..|+.|--.+- -++.|-+-++|+|-|..+++-+-..++-++|-++.
T Consensus 52 ~~Y~~~V~~mE~~i~t~RfrlE---geEYRd~ve~LDrtR~~aH~a~ISs~kIiNR~~~k 108 (153)
T 2rdc_A 52 TRYFSKVVEMEHRMASARFRLD---GEELRELTETLDRSRRLAHESLISSLHVFNRYIVK 108 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889999988854432 35788899999999999999999999999998874
Done!