Query 014969
Match_columns 415
No_of_seqs 149 out of 236
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 32.7 86 0.0063 25.2 8.5 50 316-365 150-199 (237)
2 d2e29a1 d.58.7.5 (A:8-92) ATP- 25.1 6.8 0.00049 30.2 -0.1 12 71-83 71-82 (85)
3 d1sa0e_ a.137.10.1 (E:) Stathm 23.3 35 0.0026 27.2 4.1 35 337-371 74-108 (138)
4 d2clyb1 f.53.1.1 (B:4-123) ATP 18.8 53 0.0039 26.0 4.2 20 336-355 101-120 (120)
5 d1gpja1 a.151.1.1 (A:303-404) 15.7 1.4E+02 0.01 21.9 5.9 51 315-367 3-53 (102)
6 d1gqea_ e.38.1.1 (A:) Polypept 14.2 4E+02 0.029 24.0 9.8 32 307-338 42-74 (362)
7 d1eh1a_ d.67.3.1 (A:) Ribosome 12.0 2.5E+02 0.019 23.0 7.1 49 308-357 118-168 (185)
8 d1bbha_ a.24.3.2 (A:) Cytochro 10.9 62 0.0045 25.2 2.4 45 359-414 82-126 (131)
9 d1cpqa_ a.24.3.2 (A:) Cytochro 10.2 50 0.0036 25.7 1.6 12 397-413 111-122 (129)
10 d1e85a_ a.24.3.2 (A:) Cytochro 10.0 44 0.0032 25.9 1.2 44 359-413 77-120 (125)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.65 E-value=86 Score=25.17 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 014969 316 ASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKL 365 (415)
Q Consensus 316 K~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKL 365 (415)
+....|+.......++.+.....++.+++..+.++|..+..+...|.+=+
T Consensus 150 ~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 150 HHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566655566678888888999998888888887644
No 2
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.11 E-value=6.8 Score=30.15 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=9.8
Q ss_pred CCCcccccccccc
Q 014969 71 PSKWEDAERWICS 83 (415)
Q Consensus 71 PSKWeDAErWI~S 83 (415)
=.+|+|+ |||+|
T Consensus 71 ~~~W~ds-r~~ls 82 (85)
T d2e29a1 71 QAEWHDS-DWILS 82 (85)
T ss_dssp HHHCCSS-SCEEE
T ss_pred HHHhccc-ceEEe
Confidence 3479999 89986
No 3
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.25 E-value=35 Score=27.16 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 014969 337 AKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371 (415)
Q Consensus 337 AKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rk 371 (415)
.+.+..+++.+...+...-...+++..+|..+...
T Consensus 74 ek~eE~~~k~~E~~~~~~~~~~e~le~k~e~~ee~ 108 (138)
T d1sa0e_ 74 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKEN 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444333333333334444444444333
No 4
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.79 E-value=53 Score=26.03 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014969 336 RAKAEAAIRKLEMKLEKERS 355 (415)
Q Consensus 336 KAKAEA~mrKlE~KLEkkRA 355 (415)
++..+++|+.+|.+||++++
T Consensus 101 ~~~s~~rI~~lekeLe~iks 120 (120)
T d2clyb1 101 LTQSKTRIQEYEKELEKMRN 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44566678889999988864
No 5
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=15.74 E-value=1.4e+02 Score=21.94 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014969 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKL 367 (415)
Q Consensus 315 aK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~ 367 (415)
.|+..=.+.+-.+...|-+ .-++.--|+.+-.++|..|..-++|..++|..
T Consensus 3 ~~AE~II~ee~~~F~~w~~--~~~~~p~I~~lr~~~e~ir~~Elekal~kl~~ 53 (102)
T d1gpja1 3 PKVEKLIEEELSTVEEELE--KLKERRLVADVAKSLHEIKDRELERALRRLKT 53 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556777778888844 44567788888888999999999888888763
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=14.21 E-value=4e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=17.6
Q ss_pred ccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014969 307 PSLDLSEVAA-SISKLQREEAKITAWENLQRAK 338 (415)
Q Consensus 307 ~AWEeaEkaK-~~~R~qREEaKI~AWEN~QKAK 338 (415)
.-|.+.++++ +..++...+..|..|+.+++.-
T Consensus 42 ~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~l 74 (362)
T d1gqea_ 42 DVWNEPERAQALGKERSSLEAVVDTLDQMKQGL 74 (362)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3365544433 4556666666666666665443
No 7
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=12.03 E-value=2.5e+02 Score=23.00 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014969 308 SLDLSEVAASISKLQREEA--KITAWENLQRAKAEAAIRKLEMKLEKERSYS 357 (415)
Q Consensus 308 AWEeaEkaK~~~R~qREEa--KI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a 357 (415)
+++..|.+|..-|--|.++ +|..+++.+ .--|-..+++|.++++.=-++
T Consensus 118 ~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~ 168 (185)
T d1eh1a_ 118 VRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEF 168 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4677888888887777654 555444222 123566667766666643333
No 8
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=10.90 E-value=62 Score=25.18 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccCCCCCCccccccCC
Q 014969 359 DKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHH 414 (415)
Q Consensus 359 EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF~c~a 414 (415)
|.+...+...+..|+...++++.. +...++ ..|+..|+ .|..||.
T Consensus 82 ~~F~~~~~~~~~~a~~L~~aa~~g-d~~a~~-----~a~~~lg~-----tCksCH~ 126 (131)
T d1bbha_ 82 EDVGKIAREFVGAANTLAEVAATG-EAEAVK-----TAFGDVGA-----ACKSCHE 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CHHHHH-----HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH-----HHHHHHHH-----HHHHHHH
Confidence 444445555555555554443221 111121 23555554 6999993
No 9
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId: 1061]}
Probab=10.21 E-value=50 Score=25.72 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=8.3
Q ss_pred hhccCCCCCCccccccC
Q 014969 397 FHKHGPMSSFRSCFTCH 413 (415)
Q Consensus 397 iR~TGk~Ps~~gCF~c~ 413 (415)
|+..|+ .|-.||
T Consensus 111 ~~~l~~-----sCksCH 122 (129)
T d1cpqa_ 111 LQKLGG-----TCKACH 122 (129)
T ss_dssp HHHHHH-----HHHHHH
T ss_pred HHHHHH-----hHHHHH
Confidence 555554 688888
No 10
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Probab=9.95 E-value=44 Score=25.94 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccCCCCCCccccccC
Q 014969 359 DKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413 (415)
Q Consensus 359 EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF~c~ 413 (415)
+.+.+++...+..|++..+.++..-..++..+ |+..|+ .|-.||
T Consensus 77 ~~F~~~~~~~~~aa~~L~~aa~~~d~~~~~~a------~~~lg~-----tCk~CH 120 (125)
T d1e85a_ 77 ASFKQKQQAFQDNIVKLSAAADAGDLDKLRAA------FGDVGA-----SCKACH 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH------HHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHh-----hHHHHH
Done!