Query 014970
Match_columns 415
No_of_seqs 150 out of 1323
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.4E-93 8.3E-98 722.2 51.0 404 1-415 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 4.2E-93 1.4E-97 718.0 42.7 402 1-415 2-422 (423)
3 1i31_A Clathrin coat assembly 100.0 6.7E-68 2.3E-72 512.8 32.0 283 124-415 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 2.5E-64 8.6E-69 475.8 26.5 246 168-415 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 1.2E-61 4.1E-66 479.0 32.9 248 165-415 104-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 2.2E-61 7.4E-66 462.7 28.8 250 163-415 18-301 (301)
7 1w63_Q Adapter-related protein 100.0 1.3E-31 4.6E-36 233.2 14.3 140 1-143 1-143 (158)
8 2vgl_S AP-2 complex subunit si 100.0 1.1E-30 3.9E-35 223.7 12.3 136 1-138 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 4.8E-29 1.6E-33 215.1 16.5 133 1-139 12-150 (153)
10 3g9h_A Suppressor of yeast pro 99.1 8.3E-08 2.8E-12 90.8 29.1 202 178-392 67-301 (328)
11 2nut_C Vesicle-trafficking pro 91.9 1.4 4.9E-05 38.5 11.0 95 1-97 2-102 (196)
12 2vx8_A Nucleoporin-like protei 91.5 1.6 5.5E-05 37.3 10.6 88 5-97 48-135 (169)
13 4b93_A Vesicle-associated memb 90.7 1.6 5.6E-05 37.9 10.1 83 11-97 11-93 (189)
14 4afi_A AP-3 complex subunit de 90.0 2.3 7.7E-05 36.5 10.2 83 11-97 63-145 (173)
15 3cpt_A Mitogen-activated prote 89.7 3.3 0.00011 34.1 10.3 91 2-93 38-135 (143)
16 3cue_A Transport protein parti 83.8 15 0.00052 32.4 12.0 22 1-22 2-23 (219)
17 3kyq_A YKT6, synaptobrevin hom 80.8 17 0.0006 31.6 11.3 94 2-96 4-107 (199)
18 3bw6_A Synaptobrevin homolog Y 80.5 22 0.00077 29.1 11.8 94 2-96 7-110 (144)
19 1nrj_A Signal recognition part 79.5 6.8 0.00023 32.1 7.3 73 1-73 1-93 (158)
20 2fh5_A Signal recognition part 78.9 15 0.00052 31.6 10.0 93 1-96 10-104 (185)
21 2j3t_C Trafficking protein par 78.2 10 0.00035 31.3 8.5 90 1-94 2-108 (145)
22 2j3w_A Sedlin, trafficking pro 54.3 86 0.0029 25.4 11.2 92 2-95 6-112 (142)
23 3cue_C Transport protein parti 53.2 79 0.0027 26.2 9.1 89 1-94 2-114 (159)
24 2wl8_A Peroxisomal biogenesis 21.8 1.6E+02 0.0056 23.4 5.5 42 80-123 64-107 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.4e-93 Score=722.18 Aligned_cols=404 Identities=26% Similarity=0.499 Sum_probs=356.5
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhH
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG 80 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~ 80 (415)
||+++||+|++|+++++|+|++ +.+++.++.|.+++....+ .+.+|+++.++++++|+++++|||+++++.++|++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~~~~~-~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRD-DIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSS-SCCHHHHHHHHHHTTTCSS-CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCC-CCChhHHHHHHHHHhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 9999999999999999999998 8888889999998886533 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCcchhcccccccCCCCCccCCCC
Q 014970 81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILP 160 (415)
Q Consensus 81 ~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s~~~k~~~~~~g~~~~~~~~~~ 160 (415)
++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|++++.++++.+++... .+ +...|
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~-~~-----~~~~~ 152 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK-EE-----QSQIT 152 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc-cc-----ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999997765311 11 12344
Q ss_pred CCCCcCCccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCC-------------
Q 014970 161 GATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP------------- 227 (415)
Q Consensus 161 ~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~------------- 227 (415)
++.++++|||+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++
T Consensus 153 ~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~ 232 (435)
T 2vgl_M 153 SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADE 232 (435)
T ss_dssp ------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------
T ss_pred cccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccc
Confidence 5667789999999999999999999999999999999999999999999999999999999999874
Q ss_pred --------cccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCC
Q 014970 228 --------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDP 299 (415)
Q Consensus 228 --------~~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~ 299 (415)
..++||+|||||++++|+++++|+|+||||+|+||+||++.+..+||.+.||++.. +++++|+++++++++
T Consensus 233 ~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~-~~~~ve~~l~~~~~~ 311 (435)
T 2vgl_M 233 TSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREV-GRTKLEVKVVIKSNF 311 (435)
T ss_dssp -------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECC-TTTEEEEEEEEEECS
T ss_pred ccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEec-CCCEEEEEEEEeCCC
Confidence 24789999999999999999999999999999999999998888999999999854 457899999988776
Q ss_pred CC--ceeeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecCC-cCCCCCCcEEEEE
Q 014970 300 GK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEF 374 (415)
Q Consensus 300 ~~--~~~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~pi~v~F 374 (415)
+. .+++|.|+||+|+++..+.++++.|++ +|++ ++++|+|++++++.+++++|+++|.... ...+.++||+|+|
T Consensus 312 ~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F 390 (435)
T 2vgl_M 312 KPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF 390 (435)
T ss_dssp CTTSEEEEEEEEEECCSSCCCEEEEESSSEE-EEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEE
T ss_pred CCCceeeEEEEEEECCCCCCCceEEecceeE-EEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEE
Confidence 53 699999999999999999999999999 9988 9999999999999999999999997643 3456799999999
Q ss_pred EECcccccccEEeEEEeecC-----CCccccceEEEEecCcEEEcC
Q 014970 375 RIMGVALSGLQIDKLDLQNV-----PNRLYKGFRAVTRAGEYEVRS 415 (415)
Q Consensus 375 ~~~~~~~SGl~V~~l~v~~~-----~~~~~k~vkY~t~sg~y~ir~ 415 (415)
++| +++||++|+++++.+. +|+|+|||||+|+||+|++|+
T Consensus 391 ~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 391 EVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp EES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred EEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 999 9999999999999543 799999999999999999996
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.2e-93 Score=718.01 Aligned_cols=402 Identities=28% Similarity=0.520 Sum_probs=357.1
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhH
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG 80 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~ 80 (415)
||+|+||+|++|+++++|+|++ +.+++.++.|.+++....+.++.+|+++.++++++|+++++|||+++++.++|++++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRG-DVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSC-SCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred ceEEEEEECCCCCEEEEEecCC-CCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 9999999999999999999998 888888999999988653213578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCcchhcccccccCCCCCccCCCC
Q 014970 81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILP 160 (415)
Q Consensus 81 ~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s~~~k~~~~~~g~~~~~~~~~~ 160 (415)
++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|+++|.++++... .. +...|
T Consensus 81 le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~------~~----~~~~~ 150 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLE------TG----APRPP 150 (423)
T ss_dssp HHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCC------CC---------
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccc------cc----ccCCc
Confidence 999999999999999999999999999999999999999999999999999999999998521 00 01233
Q ss_pred CCCCcCCccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCCc------------
Q 014970 161 GATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------------ 228 (415)
Q Consensus 161 ~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~~------------ 228 (415)
++.++++|||+.|++|++||||+||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++.
T Consensus 151 ~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~ 230 (423)
T 1w63_M 151 ATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS 230 (423)
T ss_dssp ------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC------------
T ss_pred ccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCc
Confidence 45567799999999999999999999999999999999999999999999999999999999999975
Q ss_pred -ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCCC--ceee
Q 014970 229 -ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDS 305 (415)
Q Consensus 229 -~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~ 305 (415)
.++||+||||||+++|+++++|+|+||||+|+||+||++....+||.+.||++.. +++++|++++++++++. .+++
T Consensus 231 v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~-~~~~ve~~l~~~~~~~~~~~~~~ 309 (423)
T 1w63_M 231 VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKH-SHSRIEYMVKAKSQFKRRSTANN 309 (423)
T ss_dssp -CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEE-TTTEEEEEEEEECCSCTTSEEES
T ss_pred eEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEec-CCCEEEEEEEEcccCCCcceeeE
Confidence 5789999999999999999999999999999999999988888999999999854 35789999998887654 6999
Q ss_pred EEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecCC-cCCCCCCcEEEEEEECccccc
Q 014970 306 IILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALS 382 (415)
Q Consensus 306 v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~pi~v~F~~~~~~~S 382 (415)
|.|+||+|+++.+++++++.|++ +|++ ++++|+|++++++.+++++|++++.... ..++.++|++|+|++|++++|
T Consensus 310 V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~S 388 (423)
T 1w63_M 310 VEIHIPVPNDADSPKFKTTVGSV-KWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTS 388 (423)
T ss_dssp CEEEEECCTTCCCCEEEESSSEE-EEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTT
T ss_pred EEEEEeCCCCcccceEEecCccE-EEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCC
Confidence 99999999999999999999999 9998 9999999999998899999999996543 245679999999999999999
Q ss_pred ccEEeEEEeec-CCCccccceEEEEecCcEEEcC
Q 014970 383 GLQIDKLDLQN-VPNRLYKGFRAVTRAGEYEVRS 415 (415)
Q Consensus 383 Gl~V~~l~v~~-~~~~~~k~vkY~t~sg~y~ir~ 415 (415)
|++|+++++.+ .+|+|+|||||+|+||+|++|+
T Consensus 389 gl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 389 GIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp CCCEEEEEEECSSCCCCEEEEEEEEEBSCEEECC
T ss_pred CCEEEEEEeEccCCCCCcCceEEEEeCCcEEEec
Confidence 99999999954 4799999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=6.7e-68 Score=512.77 Aligned_cols=283 Identities=24% Similarity=0.450 Sum_probs=224.8
Q ss_pred cccChhhHhhccCCCcchhcccccccCCCCCccCCCCCCCCcCCccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEE
Q 014970 124 LTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCE 203 (415)
Q Consensus 124 ~~t~~~~l~~~i~~~s~~~k~~~~~~g~~~~~~~~~~~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~ 203 (415)
|+||++.||++|..+++..+... ...+..+|++.++++|||+.|++|++|||||||+|+|+++++++|.++.++
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~------~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~e 74 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQT------KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAH 74 (314)
T ss_dssp -------------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccc------cccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEE
Confidence 67999999999999998654321 011234566778899999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeecCCCeeEEEecCC---------------------cccccceecceeecCCCCCCceEEEeCCCCcEEEE
Q 014970 204 IYGEVQVNCLLSGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLM 262 (415)
Q Consensus 204 v~G~i~~~~~LsG~P~~~l~ln~~---------------------~~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~ 262 (415)
|.|.|.|+|+|+|+|+|+|+||++ ..++||+|||||++++|+++++|+|+||||+|+||
T Consensus 75 V~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm 154 (314)
T 1i31_A 75 VSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM 154 (314)
T ss_dssp EEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEE
T ss_pred EEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEE
Confidence 999999999999999999999885 24789999999999999999999999999999999
Q ss_pred EEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEE
Q 014970 263 SYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTW 338 (415)
Q Consensus 263 ~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W 338 (415)
+||++.+..+||.+.||++... ++++|++++++++++. .+++|.|+||+|.++..++++++.|++ +|++ ++++|
T Consensus 155 ~Yr~~~~~~lP~~v~~~~~~~g-~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W 232 (314)
T 1i31_A 155 RYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVW 232 (314)
T ss_dssp EEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEE-EEEGGGTEEEE
T ss_pred EEEecCCcCCCEEEEEEEEecC-CcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceE-EEecCCCEEEE
Confidence 9999988889999999998653 4699999999887654 699999999999999999999999999 9999 99999
Q ss_pred EcCCCCCCCCeeEEEEEEeecCC-cCCCCCCcEEEEEEECcccccccEEeEEEeec-----CCCccccceEEEEecCcEE
Q 014970 339 SIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYE 412 (415)
Q Consensus 339 ~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~pi~v~F~~~~~~~SGl~V~~l~v~~-----~~~~~~k~vkY~t~sg~y~ 412 (415)
+|++++++.+++++|+++|.... ...+.++||+|+|++| +++||++|+++++.+ .+|+|+|||||+|+||+|+
T Consensus 233 ~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~ 311 (314)
T 1i31_A 233 KIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE 311 (314)
T ss_dssp EEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEE
T ss_pred EeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEE
Confidence 99999998899999999997643 3456799999999999 999999999999954 3799999999999999999
Q ss_pred EcC
Q 014970 413 VRS 415 (415)
Q Consensus 413 ir~ 415 (415)
+|+
T Consensus 312 ~R~ 314 (314)
T 1i31_A 312 TRC 314 (314)
T ss_dssp ECC
T ss_pred EcC
Confidence 996
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=2.5e-64 Score=475.77 Aligned_cols=246 Identities=28% Similarity=0.551 Sum_probs=223.4
Q ss_pred ccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCCc-------------ccccce
Q 014970 168 PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS-------------ILHDVR 234 (415)
Q Consensus 168 ~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~~-------------~l~~~~ 234 (415)
+||+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++. .++||+
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 6999999999999999999999999999999999999999999999999999999998753 378999
Q ss_pred ecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCC--CceeeEEEEEeC
Q 014970 235 FHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTIDSIILQFQL 312 (415)
Q Consensus 235 fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~~~v~v~ip~ 312 (415)
|||||+++.|++++.|+|+||||+|+||+||++....+||.+.||++.. +.++++++++++++++ ..+++|.|+||+
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~-~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKH-SHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEE-ETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred cccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecC-CCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 9999999999999999999999999999999998888999999999865 3579999999988765 379999999999
Q ss_pred CCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecC-CcCCCCCCcEEEEEEECcccccccEEeEE
Q 014970 313 PPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETG-LETLRVFPTFQVEFRIMGVALSGLQIDKL 389 (415)
Q Consensus 313 p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~-~~~~~~~~pi~v~F~~~~~~~SGl~V~~l 389 (415)
|.++..+.++++.|++ +|++ ++|+|+|++++++.+++++|++.+.+. ....+.++||+|+|++|++++||++|++|
T Consensus 160 P~~~~~~~~~~~~G~~-~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L 238 (266)
T 4en2_M 160 PNDADSPKFKTTVGSV-KWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 238 (266)
T ss_dssp CTTCEEEEEEESSSEE-EEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEE
T ss_pred CCCcCcceEEecCceE-EEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEE
Confidence 9999999999999999 9999 999999999999999999999999653 23457799999999999999999999999
Q ss_pred Eee-cCCCccccceEEEEecCcEEEcC
Q 014970 390 DLQ-NVPNRLYKGFRAVTRAGEYEVRS 415 (415)
Q Consensus 390 ~v~-~~~~~~~k~vkY~t~sg~y~ir~ 415 (415)
+|. +.+|+++|||||+|+||+|++|+
T Consensus 239 ~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 239 KIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp EEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 994 45899999999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=1.2e-61 Score=479.03 Aligned_cols=248 Identities=24% Similarity=0.441 Sum_probs=227.8
Q ss_pred cCCcc---CCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCC--------------
Q 014970 165 SCVPW---RPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP-------------- 227 (415)
Q Consensus 165 ~~~~w---R~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~-------------- 227 (415)
+.+|| |+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++
T Consensus 104 ~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~ 183 (385)
T 3ml6_A 104 QPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADET 183 (385)
T ss_dssp CCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC---------------
T ss_pred CCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccc
Confidence 34499 8999999999999999999999999999999999999999999999999999999875
Q ss_pred -------cccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCC
Q 014970 228 -------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG 300 (415)
Q Consensus 228 -------~~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~ 300 (415)
..++||+|||||++++|+++++|+|+||||+|+||+||++.+..+||.+.|+++... +++++++++++++++
T Consensus 184 ~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~-~~~vei~v~lk~~f~ 262 (385)
T 3ml6_A 184 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFK 262 (385)
T ss_dssp -------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEET-TTEEEEEEEEEECSC
T ss_pred cccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCC-CeEEEEEEEEeecCC
Confidence 237899999999999999999999999999999999999888889999999999764 679999999998865
Q ss_pred C--ceeeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecC-CcCCCCCCcEEEEEE
Q 014970 301 K--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETG-LETLRVFPTFQVEFR 375 (415)
Q Consensus 301 ~--~~~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~-~~~~~~~~pi~v~F~ 375 (415)
. .+++|.|+||+|+++.+++++++.|++ +|++ ++++|+|++++|+.+++++|++.+.+. ....+.++||+|+|+
T Consensus 263 ~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~ 341 (385)
T 3ml6_A 263 PSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFE 341 (385)
T ss_dssp TTCCEEEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEE
T ss_pred CcceEEEEEEEecCCCCcccceEEecCceE-EEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEEEEE
Confidence 4 799999999999999999999999999 9998 999999999999989999999999653 234467999999999
Q ss_pred ECcccccccEEeEEEe-ec----CCCccccceEEEEecCcEEEcC
Q 014970 376 IMGVALSGLQIDKLDL-QN----VPNRLYKGFRAVTRAGEYEVRS 415 (415)
Q Consensus 376 ~~~~~~SGl~V~~l~v-~~----~~~~~~k~vkY~t~sg~y~ir~ 415 (415)
+| +++||++|++++| ++ .+|+++|||||+|+||+|+||+
T Consensus 342 Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 342 VP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp ES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred Ee-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 99 9999999999999 43 4689999999999999999996
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-61 Score=462.73 Aligned_cols=250 Identities=23% Similarity=0.376 Sum_probs=208.1
Q ss_pred CCcC-CccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCCc-------------
Q 014970 163 TASC-VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------------- 228 (415)
Q Consensus 163 ~~~~-~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~~------------- 228 (415)
++.+ .+||+. +|++|||||||+|+|+++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++.
T Consensus 18 ~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~ 95 (301)
T 3l81_A 18 ASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPG 95 (301)
T ss_dssp -----------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCCSS
T ss_pred hcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccccCc
Confidence 3444 499996 799999999999999999999999999999999999999999999999999642
Q ss_pred -ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCC--CCCEEEEEEEEEcCCceEEEEEEEeecCCC--Cce
Q 014970 229 -ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLK--STPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTI 303 (415)
Q Consensus 229 -~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~--~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~ 303 (415)
.++||+|||||++++|++++.|+|+||||+|+||+||++... .+||.+.||++...+++++|++++++++++ ..+
T Consensus 96 ~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~~ 175 (301)
T 3l81_A 96 IRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQA 175 (301)
T ss_dssp SEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCEE
T ss_pred eEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcEE
Confidence 378999999999999999999999999999999999998753 699999999998755589999999988765 389
Q ss_pred eeEEEEEeCCCCceeeE--EEeccccceeeeCcEEEEEcCCCCCCCCeeEEEEEEeecCCc----------CCCCCCcEE
Q 014970 304 DSIILQFQLPPCILSAD--LTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLE----------TLRVFPTFQ 371 (415)
Q Consensus 304 ~~v~v~ip~p~~~~~~~--~~~~~G~~~~~~~~~l~W~I~~~~~~~~~~l~g~~~~~~~~~----------~~~~~~pi~ 371 (415)
++|.|+||+|.++.+++ +.++.|++ +|+.++|+|+|++++++.+.++++++++..... ..+.++||+
T Consensus 176 ~nV~I~IPvP~~~~~~~~~~~~~~G~~-~y~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI~ 254 (301)
T 3l81_A 176 LNVRLHLPLPRGVVSLSQELSSPEQKA-ELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPAS 254 (301)
T ss_dssp EEEEEEEECCTTCEEEEEEESSTTCEE-EEETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCCCEE
T ss_pred EEEEEEEcCCCCcccceEEEeecCceE-EEeCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCCCEE
Confidence 99999999999998888 55788999 994499999999999988888888777754221 145689999
Q ss_pred EEEEECcccccccEEeEEEeecC---CCccccceEEEEecCcEEEcC
Q 014970 372 VEFRIMGVALSGLQIDKLDLQNV---PNRLYKGFRAVTRAGEYEVRS 415 (415)
Q Consensus 372 v~F~~~~~~~SGl~V~~l~v~~~---~~~~~k~vkY~t~sg~y~ir~ 415 (415)
|+|++|++++||++|++|+|.+. +|+++|||||+|+||+|+||+
T Consensus 255 v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 255 LSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp EEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred EEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 99999999999999999999543 589999999999999999996
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=1.3e-31 Score=233.24 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=127.6
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCCCc---chHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCCh
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRVDR---SICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPP 77 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~~~---~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~ 77 (415)
||+++||+|++|+++++|+|++ ..++ ...+.|++.+..+. .+.+|+++.++++++|+++++|||+++++.++|+
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~-~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLA-TSDKERKKMVRELMQVVLARK--PKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSC-CCHHHHHHHHHHHHHHHHTSC--SSSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCC-CCHHHHHHHHHHHHHHHhccC--CCCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 9999999999999999999998 5543 45567877776542 3578999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCcchhc
Q 014970 78 LMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSK 143 (415)
Q Consensus 78 l~~~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s~~~k 143 (415)
+++++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|+++|.+++.+++
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998877554
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=1.1e-30 Score=223.75 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=121.6
Q ss_pred CeEEEEEEcCCCCEEEEEccCCC--CCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChh
Q 014970 1 MLQCIFLLADNGAVILEKQLTGH--RVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPL 78 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~--~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l 78 (415)
||+|++|+|++|+++++|+|++. +.+++..+.|.+.+..+. .+.+|+++.++++++|+++++|||+++++.++|++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~--~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l 78 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD--AKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNL 78 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC--TTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC--CCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHH
Confidence 99999999999999999999951 223556778988888542 35789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccC-hhhHhhccCCC
Q 014970 79 MGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTE-PNILREMIAPP 138 (415)
Q Consensus 79 ~~~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~-~~~l~~~i~~~ 138 (415)
+++++||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+ .+.|++++.++
T Consensus 79 ~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 79 AYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999985 67788877544
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.96 E-value=4.8e-29 Score=215.10 Aligned_cols=133 Identities=15% Similarity=0.233 Sum_probs=115.8
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCC-C---cchHH-HHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCC
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRV-D---RSICD-WFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEM 75 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~-~---~~~~~-~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~ 75 (415)
||+|++|+|++|+++++|||++ +. + +...+ .+++++. + ..+|++..+++.++|+++++|||+++++.++
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~-~~~~~~~~~~~e~~i~~~~~-r----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~e 85 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDD-TYPSVKEQKAFEKNIFNKTH-R----TDSEIALLEGLTVVYKSSIDLYFYVIGSSYE 85 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSS-SSCSHHHHHHHHHHHHHHHS-S----CCCCEEEETTEEEEEEECSSCEEEEEEETTS
T ss_pred HheEEEEECCCCCEEEEEeCCC-CCCCHHHHHHHHHHHHHHHh-C----CCCCEEEECCEEEEEEEECCEEEEEEEcCCC
Confidence 9999999999999999999998 64 3 33344 3555542 2 2268999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhc-CCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCc
Q 014970 76 PPLMGIEFLCRVADILSDYL-GELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPN 139 (415)
Q Consensus 76 n~l~~~~~L~~i~~~l~~~~-~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s 139 (415)
|+++++++||+++++|++|| ++++|++|++||+++|++||||+|+|+||+|+++.|.+.+.+.+
T Consensus 86 Nel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 99999999999999999999 78999999999999999999999999999999999999998765
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8.3e-08 Score=90.83 Aligned_cols=202 Identities=17% Similarity=0.292 Sum_probs=133.8
Q ss_pred cceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecC-------CCeeEEEecCCcccccceecc----eeecCCCCC
Q 014970 178 NNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSG-------LPDLTLSFANPSILHDVRFHP----CVRFRPWES 246 (415)
Q Consensus 178 ~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG-------~P~~~l~ln~~~~l~~~~fH~----cV~~~~~~~ 246 (415)
..++-..++|.|||.+. +|.+..+.|.|+|.+. |..| .+.+.++|++...|+.+.-.+ ++.
T Consensus 67 ~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~------ 138 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFK-DGMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVA------ 138 (328)
T ss_dssp CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEE------
T ss_pred CCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhheeeCCHHHhccCC------
Confidence 45777899999999996 6889999999999885 4444 255888888766566543332 222
Q ss_pred CceEEEeCC---CCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCCC-----ceeeEEEEEeCCC-Cce
Q 014970 247 HQILSFVPP---DGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK-----TIDSIILQFQLPP-CIL 317 (415)
Q Consensus 247 ~~~l~f~PP---dg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~-----~~~~v~v~ip~p~-~~~ 317 (415)
++...|-++ ...-.+++|+++. ...|+.+.+.-+.++....+-|.+++.+.+.. .++||.+.+|+.. .++
T Consensus 139 ~~eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa~at 217 (328)
T 3g9h_A 139 PEEFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGANAT 217 (328)
T ss_dssp TTEEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSSCEE
T ss_pred CCCEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCCcee
Confidence 122333332 1235689999975 77899998876666543344334334333322 7999999999977 354
Q ss_pred eeEEEeccccceeeeCcEEEEEcCC-C--CCCCC-eeEEEEEEeecCCcCCCCCCcEEEEEEECcc---------ccccc
Q 014970 318 SADLTSNHGTVNVLSNKICTWSIGR-I--PKDKA-PSLSGTMVLETGLETLRVFPTFQVEFRIMGV---------ALSGL 384 (415)
Q Consensus 318 ~~~~~~~~G~~~~~~~~~l~W~I~~-~--~~~~~-~~l~g~~~~~~~~~~~~~~~pi~v~F~~~~~---------~~SGl 384 (415)
++...+ .|++ .=+.+.+.|+++. + ..+.+ ..|.|.+..+. ...+... .+.+.|++.+. .-|||
T Consensus 218 s~qskP-~gtw-n~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g-~~~~~~~-gV~akF~~~~~~~~~~~~~~~gsgi 293 (328)
T 3g9h_A 218 SALSKP-QGSF-SKEKKRITWRFKEPVVLTRNGEGQRLIARFITDG-LAHESAK-GVITKFTISETDNVALPHSGAGSGI 293 (328)
T ss_dssp EEEESS-SCCB-CSSSCEEEEECSSCEEEETTCCCEEEEEEEEESS-CCCBCSS-CEEEEEEECCCSCSSCTTTTCSCCC
T ss_pred EEEecC-Ccee-ccccCEEEEECCCCcccccCCCCCeEEEEEEcCC-CCCCCCC-cEEEEEEEeCCCcccccccccCCce
Confidence 444433 6766 4444999999998 3 32223 78988988733 2222222 39999999975 46799
Q ss_pred EEeEEEee
Q 014970 385 QIDKLDLQ 392 (415)
Q Consensus 385 ~V~~l~v~ 392 (415)
.|......
T Consensus 294 ~i~~~~~~ 301 (328)
T 3g9h_A 294 TLTCQELD 301 (328)
T ss_dssp EEEEEEES
T ss_pred eEEecccc
Confidence 99888773
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=91.90 E-value=1.4 Score=38.49 Aligned_cols=95 Identities=11% Similarity=0.170 Sum_probs=61.2
Q ss_pred CeEEEEEEcC-CCCEEEEEccCCCCC---CcchHHHHHHHHhccCCCCCCCC--EEEcCCEEEEEEEeCCEEEEEEecCC
Q 014970 1 MLQCIFLLAD-NGAVILEKQLTGHRV---DRSICDWFWDHVISQGDSFKSMP--VIASPTHYIFQIVRAGITFLACTQVE 74 (415)
Q Consensus 1 MI~~i~I~~~-~G~~l~~r~y~~~~~---~~~~~~~f~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~l~~v~~~~~~ 74 (415)
||...+|.-. +|-+|.+..-.+ .. .+.....+.+.+...-..+ .+. .+..+.+.++|...+++.++|+++.+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~-~~~~~~~~~~~~~a~~il~ki~~~-~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQED-EQSGRDLQQYQSQAKQLFRKLNEQ-SPTRCTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC------CHHHHHHHHHHHHHHCCTT-SCSEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeeccc-ccccccHHHHHHHHHHHHHhcCCC-CCCeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 7777777654 466666544221 11 2223344445555432211 112 34557888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhcCC
Q 014970 75 MPPLMGIEFLCRVADILSDYLGE 97 (415)
Q Consensus 75 ~n~l~~~~~L~~i~~~l~~~~~~ 97 (415)
-+.-.++.||..+.+-+..-++.
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999877765553
No 12
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.49 E-value=1.6 Score=37.27 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred EEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhHHHHH
Q 014970 5 IFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFL 84 (415)
Q Consensus 5 i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~~~~L 84 (415)
..++.+ |.++++.+-.. . ......-+.++.+......--.++.+.+.+.|...+++.|+|+++.+-.-..++.||
T Consensus 48 Ya~VaR-G~~VLae~t~~---~-gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 48 FAVVAR-GTTILAKHAWC---G-GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp EEEEEE-TTEEEEEEESS---C-BSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred EEEEEc-CCEEEEEeccC---C-CCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 334444 55666654221 2 223444455554422111112455688888888889999999999999999999999
Q ss_pred HHHHHHHhhhcCC
Q 014970 85 CRVADILSDYLGE 97 (415)
Q Consensus 85 ~~i~~~l~~~~~~ 97 (415)
.++.+-+..-++.
T Consensus 123 edI~~eF~~~y~~ 135 (169)
T 2vx8_A 123 NEVKKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999988776664
No 13
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=90.67 E-value=1.6 Score=37.90 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=56.9
Q ss_pred CCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHHHHHHH
Q 014970 11 NGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADI 90 (415)
Q Consensus 11 ~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~~~~L~~i~~~ 90 (415)
+|.++++.+=. .+.+ ...+-++++..-.....--.+..+.+.+.|...+++.++|+++.+-+--.++.||..+.+-
T Consensus 11 rg~~iLae~t~---~~gn-f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 11 RGTTILAKHAW---CGGN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp ETTEEEEEEES---SEEC-HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred eCCEEEEeCCC---CCCC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 58888887522 2222 3334444443322111112345688888889999999999999999999999999999988
Q ss_pred HhhhcCC
Q 014970 91 LSDYLGE 97 (415)
Q Consensus 91 l~~~~~~ 97 (415)
+..-++.
T Consensus 87 F~~~~~~ 93 (189)
T 4b93_A 87 FQTTYGS 93 (189)
T ss_dssp HHHHHGG
T ss_pred HHhhccc
Confidence 8776664
No 14
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=90.04 E-value=2.3 Score=36.50 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHHHHHHH
Q 014970 11 NGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADI 90 (415)
Q Consensus 11 ~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~~~~L~~i~~~ 90 (415)
+|.++++.+=.. + ...+.+-++++.+......--.++.+.+.+.|...+++.++|+++.+-.--..+.||..+.+-
T Consensus 63 rg~tiLAE~t~~---~-gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~e 138 (173)
T 4afi_A 63 RGTTILAKHAWC---G-GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 138 (173)
T ss_dssp ETTEEEEEEESS---C-CCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCC---C-CCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHH
Confidence 577887766332 2 223455555554422111112455688888888899999999999999999999999999998
Q ss_pred HhhhcCC
Q 014970 91 LSDYLGE 97 (415)
Q Consensus 91 l~~~~~~ 97 (415)
+..-++.
T Consensus 139 F~~~yg~ 145 (173)
T 4afi_A 139 FQTTYGS 145 (173)
T ss_dssp HHHHHGG
T ss_pred HHHHhch
Confidence 8776664
No 15
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=89.72 E-value=3.3 Score=34.07 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCCC----cchHHHHHHHHhccC--CCCCCCCEEEc-CCEEEEEEEeCCEEEEEEecCC
Q 014970 2 LQCIFLLADNGAVILEKQLTGHRVD----RSICDWFWDHVISQG--DSFKSMPVIAS-PTHYIFQIVRAGITFLACTQVE 74 (415)
Q Consensus 2 I~~i~I~~~~G~~l~~r~y~~~~~~----~~~~~~f~~~~~~~~--~~~~~~~i~~~-~~~~~~~~~~~~l~~v~~~~~~ 74 (415)
+.+|+|.|++|-+|+.-...+ ... .+.+..|-....+.+ ..+++..++.. +.+.+++.....+++..++..+
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~-~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDN-APEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTT-SCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCC-CchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 579999999999999887654 221 123333433322211 22454556644 7777787788999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 014970 75 MPPLMGIEFLCRVADILSD 93 (415)
Q Consensus 75 ~n~l~~~~~L~~i~~~l~~ 93 (415)
.|.=.++.+=+.+..++.+
T Consensus 117 aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHHH
Confidence 9998888776666666554
No 16
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=83.84 E-value=15 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.575 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCEEEEEccCC
Q 014970 1 MLQCIFLLADNGAVILEKQLTG 22 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~ 22 (415)
||.+++|+|+.|..|++|.|..
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~ 23 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTN 23 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSS
T ss_pred eeEEEEEEeCCCCEEeehhhcc
Confidence 5899999999999999999975
No 17
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=80.84 E-value=17 Score=31.59 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCC-E-EEEEccCCCCC---CcchHHHH----HHHHhccCCCCCCCCEEEcCCEEEE-EEEeCCEEEEEEe
Q 014970 2 LQCIFLLADNGA-V-ILEKQLTGHRV---DRSICDWF----WDHVISQGDSFKSMPVIASPTHYIF-QIVRAGITFLACT 71 (415)
Q Consensus 2 I~~i~I~~~~G~-~-l~~r~y~~~~~---~~~~~~~f----~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~v~~~ 71 (415)
|.+|.|+...|+ + +++..|.-... .|+...+| -+.+..+...+. --.++.+.+.++ |...+++.+++++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~-r~s~~~~~y~fH~y~~~~gl~yl~it 82 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGS-RASVKEQEYLCHVYVRSDSLAGVVIA 82 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTE-EEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCC-eEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 457777765444 3 34555542122 35555443 234444432111 113445666665 6778999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhhcC
Q 014970 72 QVEMPPLMGIEFLCRVADILSDYLG 96 (415)
Q Consensus 72 ~~~~n~l~~~~~L~~i~~~l~~~~~ 96 (415)
+.+-+.-.++.||..+.+-+..-++
T Consensus 83 d~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 83 DSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988877666
No 18
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=80.49 E-value=22 Score=29.06 Aligned_cols=94 Identities=18% Similarity=0.089 Sum_probs=57.3
Q ss_pred eEEEEEEcCCC--CEEEEEccCCCCC---CcchHHHH----HHHHhccCCCCCCCCEEEcCCEEEEEE-EeCCEEEEEEe
Q 014970 2 LQCIFLLADNG--AVILEKQLTGHRV---DRSICDWF----WDHVISQGDSFKSMPVIASPTHYIFQI-VRAGITFLACT 71 (415)
Q Consensus 2 I~~i~I~~~~G--~~l~~r~y~~~~~---~~~~~~~f----~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~l~~v~~~ 71 (415)
|-++.|+-..+ -++++..+.-... .|+...+| -+.+..+...+.. --++.+.+.++|. ..+++.+++++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R-~sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQR-QSIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEE-EEEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCce-EEEEeCCEEEEEEEecCCEEEEEEE
Confidence 34565664332 4555655442112 35544544 4444443322211 1344577666666 66899999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhhcC
Q 014970 72 QVEMPPLMGIEFLCRVADILSDYLG 96 (415)
Q Consensus 72 ~~~~n~l~~~~~L~~i~~~l~~~~~ 96 (415)
+.+-+.-..+.||+.+.+-...-++
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999988887766555
No 19
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=79.47 E-value=6.8 Score=32.07 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=45.9
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCC--CC---------CCCEEEc-------CC-EEEEE-E
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDS--FK---------SMPVIAS-------PT-HYIFQ-I 60 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~--~~---------~~~i~~~-------~~-~~~~~-~ 60 (415)
||+.+.|+..+|++|+...--+.......+.+|..+++..+-. .. --+++.+ ++ .+.|| -
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999999776333245556677888888875321 00 1134544 22 33333 3
Q ss_pred EeCCEEEEEEecC
Q 014970 61 VRAGITFLACTQV 73 (415)
Q Consensus 61 ~~~~l~~v~~~~~ 73 (415)
+...||||++-..
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 4467999888743
No 20
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=78.87 E-value=15 Score=31.58 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCC--EEEEEEecCCCChh
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAG--ITFLACTQVEMPPL 78 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--l~~v~~~~~~~n~l 78 (415)
|++.+.|++..|=+|-++.-.. ....+.+.++.+.++-... . ..+.+..+.+.+=+...|+ |.||++-..--+..
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~-~~~~~~IN~LIr~VlLEER-~-~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~ 86 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVS-DSCTGPVNALIRSVLLQER-G-GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT 86 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTT-BSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred ceeEEEEEeCCeEEEEeecCCc-ccccchHHHHHHHhhhccc-c-CCCceeEcCeEEEEEEeccCCEEEEEEEcccccch
Confidence 8899999999999998843222 2335567776666664322 1 2344666777776666655 78888877644455
Q ss_pred hHHHHHHHHHHHHhhhcC
Q 014970 79 MGIEFLCRVADILSDYLG 96 (415)
Q Consensus 79 ~~~~~L~~i~~~l~~~~~ 96 (415)
.+=+||..+...+.+-++
T Consensus 87 YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 87 YVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666555555553
No 21
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=78.20 E-value=10 Score=31.30 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCCCEEEEEccCCCCC----C-cch----------HHHHHHHHhccCCCCCCCCEEEcCCEEEE-EEEeCC
Q 014970 1 MLQCIFLLADNGAVILEKQLTGHRV----D-RSI----------CDWFWDHVISQGDSFKSMPVIASPTHYIF-QIVRAG 64 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~~~----~-~~~----------~~~f~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 64 (415)
||.+++|+|++|.+|+++.|.. .. + .+. +..+..++.- ......--.+..+...++ |.-..+
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~-~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp-~~~~~~~~~~~t~~ykl~~~~T~Tg 79 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHR-KKQAGIPKEEEYKLMYGMLFSIRSFVSKMSP-LDMKDGFLSFQTSRYKLHYYETPTG 79 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSC-SSCCSSCHHHHHHHHHHHHHHHHHHHHHHCS-SCCSSCEEEEECSSCEEEEEECTTS
T ss_pred eEEEEEEEeCCCCEEEeeeecC-CCcCCCCcchHHHHHHHHHHHHHHHHHHhCC-CCCCCceEEEecCCEEEEEEEcCCC
Confidence 5889999999999999999964 22 1 111 1122223221 111111123344555443 456678
Q ss_pred EEEEEEecCCCChhhHHHHHHHHH-HHHhhh
Q 014970 65 ITFLACTQVEMPPLMGIEFLCRVA-DILSDY 94 (415)
Q Consensus 65 l~~v~~~~~~~n~l~~~~~L~~i~-~~l~~~ 94 (415)
+-|+++++..++. +-++|+++. ++.-+|
T Consensus 80 iKFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 80 IKVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp CEEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred CEEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 9999999876544 345666666 455554
No 22
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=54.26 E-value=86 Score=25.38 Aligned_cols=92 Identities=8% Similarity=0.004 Sum_probs=48.2
Q ss_pred eEEEEEEcCCCCEEEEEccCCCCCCcc---hH-HHH---HHHH----hccCCCCCCCCEEEc---CCEEEE-EEEeCCEE
Q 014970 2 LQCIFLLADNGAVILEKQLTGHRVDRS---IC-DWF---WDHV----ISQGDSFKSMPVIAS---PTHYIF-QIVRAGIT 66 (415)
Q Consensus 2 I~~i~I~~~~G~~l~~r~y~~~~~~~~---~~-~~f---~~~~----~~~~~~~~~~~i~~~---~~~~~~-~~~~~~l~ 66 (415)
|.+++|++++|.+|+.+.|.. ..+.. .. ..+ .... ..........-.... +.+.++ |.-..++=
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~-~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLP-PGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECC-SCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCC-cCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcE
Confidence 589999999999999999975 32211 11 011 0000 000000111112222 343343 45667898
Q ss_pred EEEEecCCCChhhHHHHHHHHHHHHhhhc
Q 014970 67 FLACTQVEMPPLMGIEFLCRVADILSDYL 95 (415)
Q Consensus 67 ~v~~~~~~~n~l~~~~~L~~i~~~l~~~~ 95 (415)
|+++++.. +.-.+-++++++.++.-+|.
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 99998753 34445566666665555544
No 23
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=53.20 E-value=79 Score=26.25 Aligned_cols=89 Identities=8% Similarity=0.136 Sum_probs=47.4
Q ss_pred CeEEEEEEcCCCCEEEEEccCCC------CCC-cchHH-------------HHHHHHhccCCCCCCCCEE--EcCCEEEE
Q 014970 1 MLQCIFLLADNGAVILEKQLTGH------RVD-RSICD-------------WFWDHVISQGDSFKSMPVI--ASPTHYIF 58 (415)
Q Consensus 1 MI~~i~I~~~~G~~l~~r~y~~~------~~~-~~~~~-------------~f~~~~~~~~~~~~~~~i~--~~~~~~~~ 58 (415)
||.+++|+|++|.+|+.|.|... ..+ +...+ .|.+++.- . .....+. ..+.+.++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~--~-~~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK--G-SVKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCC--S-SSCCCEEEEECSSCBEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCC--C-CCCCCeEEEeeCCEEEE
Confidence 58899999999999999988530 111 11111 11222111 1 1112332 23444443
Q ss_pred -EEEeCCEEEEEEecCCCChhhHHHHHHHHHH-HHhhh
Q 014970 59 -QIVRAGITFLACTQVEMPPLMGIEFLCRVAD-ILSDY 94 (415)
Q Consensus 59 -~~~~~~l~~v~~~~~~~n~l~~~~~L~~i~~-~l~~~ 94 (415)
|.-..++-||++++..++.+ -++|+++.+ +.-+|
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 35557899999998765443 345666664 55554
No 24
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=21.82 E-value=1.6e+02 Score=23.39 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhcCCCC-H-HHHHhhHHHHHHHHHHHhcCCcc
Q 014970 80 GIEFLCRVADILSDYLGELN-E-DLIKDNFVIVYELLDEMIDNGFP 123 (415)
Q Consensus 80 ~~~~L~~i~~~l~~~~~~l~-e-~~i~~N~~~i~~lldEiid~G~p 123 (415)
-++++.+|+..+++ ..-+ + ..-+.+|..|..++.+|=+.|.|
T Consensus 64 Q~~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~P 107 (126)
T 2wl8_A 64 QHSVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHP 107 (126)
T ss_dssp HHHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 34555666666554 2222 2 22346788899999999999887
Done!