BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014971
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 178/339 (52%), Gaps = 41/339 (12%)
Query: 41 IWPLPAQFSSGNDTLSVDPALCL----SVSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P S G ++EEAF RY IF HE
Sbjct: 56 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 115
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 116 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 157
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 158 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHY 213
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 214 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 273
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 274 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 333
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLR 360
+ ++ ++FP + HLGGDEV CW S P ++ ++R
Sbjct: 334 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMR 372
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 178/339 (52%), Gaps = 41/339 (12%)
Query: 41 IWPLPAQFSSGNDTLSVDPALCL----SVSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P S G ++EEAF RY IF HE
Sbjct: 7 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 66
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 67 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 108
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHY 164
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 165 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 224
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 225 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 284
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLR 360
+ ++ ++FP + HLGGDEV CW S P ++ ++R
Sbjct: 285 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMR 323
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 178/339 (52%), Gaps = 41/339 (12%)
Query: 41 IWPLPAQFSSGNDTLSVDPALCL----SVSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P S G ++EEAF RY IF HE
Sbjct: 7 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 66
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 67 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 108
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHY 164
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 165 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 224
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 225 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 284
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLR 360
+ ++ ++FP + HLGGDEV CW S P ++ ++R
Sbjct: 285 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMR 323
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 178/339 (52%), Gaps = 41/339 (12%)
Query: 41 IWPLPAQFSSGNDTLSVDPALCL----SVSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P S G ++EEAF RY IF HE
Sbjct: 15 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 74
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 75 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 116
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 117 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHY 172
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 173 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 232
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 233 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 292
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLR 360
+ ++ ++FP + HLGGDEV CW S P ++ ++R
Sbjct: 293 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMR 331
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 180/333 (54%), Gaps = 28/333 (8%)
Query: 41 IWPLPAQFSSGNDTLSVDP---ALCLSVSGKGS-GLKIVEEAFERYKAIIFEHEVEGVNS 96
+WP P F + + + P VS G +++EAF+RY+ ++F G S
Sbjct: 1 LWPWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLF-----GSGS 55
Query: 97 HSVFNNFRKRRSRGFDIGTLKIVVHSDNEELQLGVDESYTLLVAKNEGLSIIGEATIEAN 156
KR + ++ + +V N+ L E+YTL + ++ L + +
Sbjct: 56 WPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVENYTLTINDDQCLLL-------SE 108
Query: 157 TVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIK 216
TV+GALRGLETFSQL + + + I+D PRF RGLL+DTSRHYLP+ I
Sbjct: 109 TVWGALRGLETFSQLV---WKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSIL 165
Query: 217 QIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWER-YTVEDAHEIVSFAK 274
++ M+Y KLNV HWH++D+ SFP E T+P L KG+Y+ YT +D E++ +A+
Sbjct: 166 DTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYAR 225
Query: 275 MRGINVMAEVDVPGHAESWGAGYPNLW-PSPSCRE------PLDVSKNFTFEVISGILSD 327
+RGI V+AE D PGH SWG G P L P S E P++ S N T+E +S +
Sbjct: 226 LRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLE 285
Query: 328 LRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLR 360
+ +FP HLGGDEV+ CW S P ++ ++R
Sbjct: 286 VSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMR 318
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 42/365 (11%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 46 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 97
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 98 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 152
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 153 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 211
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 212 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 271
Query: 277 GINVMAEVDVPGHAESWGAGYPNL----------WPSPSCREP----LDVSKNFTFEVIS 322
G+ V+ E D P H G G+ + W S C EP L+ +K+ ++ +
Sbjct: 272 GVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKS-YCGEPPCGQLNPTKDELYQYLE 327
Query: 323 GILSDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLT 376
I SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF
Sbjct: 328 DIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQK 387
Query: 377 AQKIA 381
AQ A
Sbjct: 388 AQDKA 392
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 42/365 (11%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 43 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 94
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 95 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 149
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 150 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 209 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 277 GINVMAEVDVPGHAESWGAGYPNL----------WPSPSCREP----LDVSKNFTFEVIS 322
G+ V+ E D P H G G+ + W S C EP L+ +K+ ++ +
Sbjct: 269 GVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKS-YCVEPPCGQLNPTKDELYQYLE 324
Query: 323 GILSDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLT 376
I SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF
Sbjct: 325 DIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQK 384
Query: 377 AQKIA 381
AQ A
Sbjct: 385 AQDKA 389
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 187/362 (51%), Gaps = 36/362 (9%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 43 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 94
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 95 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 149
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 150 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 209 TIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 277 GINVMAEVDVPGH-AESW----------GAGYPNLWPSPSCREPLDVSKNFTFEVISGIL 325
G+ V+ E D P H E W + + +P C + L+ +K+ ++ + I
Sbjct: 269 GVRVLPEFDAPAHVGEGWQDTDLTVCFKAEPWKSYCVAPPCGQ-LNPTKDELYQYLEDIY 327
Query: 326 SDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLTAQK 379
SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF AQ
Sbjct: 328 SDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQKAQD 387
Query: 380 IA 381
A
Sbjct: 388 KA 389
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 142 NEGLSII---GEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYI-----QDK 193
NEG +I + T+ AN G RG +T QL + K+ +V W I DK
Sbjct: 121 NEGYDLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIE-KNTVVSGVQWVIPHSNISDK 179
Query: 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK- 252
P + +RGL++D +RH+ VD +K+ I+ S K+N H H+ D+Q + +E+ ++P+L +
Sbjct: 180 PEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI 239
Query: 253 -----GAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCR 307
YT E +IVS+A R I V+ E+D+PGH + A Y L P +
Sbjct: 240 GSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRK 299
Query: 308 ----------EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVN 345
L T++ + ++S+L I P HLGGDE N
Sbjct: 300 AMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESN 347
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 190 IQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPN 249
++DKPRF +RG +D +RH+ P D + + IE + KLNVLH H+ D+Q + ++ YP
Sbjct: 132 VEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPK 191
Query: 250 LWK-GAYSK------WER-----------YTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291
L + GA+ + W YT +D EIV+FA R I V+ E+DVPGH++
Sbjct: 192 LTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQ 251
Query: 292 SWGAGYPNLWPSPS-CREPLDVSKNF------------TFEVISGILSDLRKIFPFELFH 338
+ A YP L P+ P++V + + E +L ++ +IFP
Sbjct: 252 AAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWIS 311
Query: 339 LGGDEV 344
LGGDEV
Sbjct: 312 LGGDEV 317
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 51/282 (18%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GGDE ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKF 407
K + F+ Q I T V W L A + ++ ++
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQY 366
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 51/282 (18%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GG+E ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKF 407
K + F+ Q I T V W L A + ++ ++
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQY 366
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 51/282 (18%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GG E ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKF 407
K + F+ Q I T V W L A + ++ ++
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQY 366
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E A + G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKE-------AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAE----SWGAGYPNLWPSPSCREP-----------------------------LDVSK 314
HA S A Y L + +E LD S+
Sbjct: 424 AHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQ 483
Query: 315 NFTFEVISGILSDLRKIF--PFELFHLGGDEVNT 346
F +VI G ++ + K P + +H GGDE
Sbjct: 484 RFVDKVI-GEIAQMHKEAGQPIKTWHFGGDEAKN 516
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E A + G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKE-------AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAES 292
HA +
Sbjct: 424 AHARA 428
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E A + G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKE-------AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAES 292
HA +
Sbjct: 424 AHARA 428
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLE-----------VPTYP 248
GL++D +RH+ +VIK I+++S + N LH H D +++ +E V
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 249 NLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH--------AESWGAGYPNL 300
++ Y+ + +I ++AK +GI ++ E+D P H + G Y
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 301 WPSPSCREPLDVSKNFTFEVISGILSDLRKIF--PFELFHLGGDE 343
S + +D++ + + ++S++ IF + FH+GGDE
Sbjct: 140 LKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDE 184
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 28/177 (15%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSS 351
P + +D+ + ++ F ++F+ G DE D S+
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATSA 191
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 28/177 (15%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 32 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 91
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 92 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 151
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSS 351
P + +D+ + ++ F ++F+ G D+ D S+
Sbjct: 152 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSA 208
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 28/177 (15%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSS 351
P + +D+ + ++ F ++F+ G D+ D S+
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSA 191
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 31/176 (17%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHWHI--------IDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH + +D+ S TY +
Sbjct: 17 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITANGKTYASDDVKR 76
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 77 AIEKGTNDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQ 136
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDC 348
PN + S R +D+ ++ F E+F++G DE D
Sbjct: 137 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDA 191
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 31/176 (17%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDC 348
PN + S R +D+ ++ F E+F++G DE D
Sbjct: 132 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDA 186
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 32 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 91
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES 292
+ KG + T +++++AK +GI ++ V+ PGH ++
Sbjct: 92 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDA 140
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES 292
+ KG + T +++++AK +GI ++ V+ PGH ++
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDA 120
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92a Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92s Mutant Complexed With Carbamyl Phosphate And
N-Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92v Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 69 GSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLKIVVHS-DNEEL 127
G G +I +AF Y ++F+ + FN + F L VH+ N++L
Sbjct: 132 GWGSRITIDAFAEYAELMFKELGGKIKQWITFN---EPWCMAFLSNYLG--VHAPGNKDL 186
Query: 128 QLGVDESYTLLVAKNEG------LSIIGEATIEANT 157
QL +D S+ LLVA L I GE I NT
Sbjct: 187 QLAIDVSHHLLVAHGRAVTLFRELGISGEIGIAPNT 222
>pdb|4EXA|A Chain A, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXA|B Chain B, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXA|C Chain C, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXA|D Chain D, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXA|E Chain E, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXA|F Chain F, Crystal Structure Of The Pa4992, The Putative Aldo-keto
Reductase From Pseudomona Aeruginosa
pdb|4EXB|A Chain A, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
pdb|4EXB|B Chain B, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
pdb|4EXB|C Chain C, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
pdb|4EXB|D Chain D, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
pdb|4EXB|E Chain E, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
pdb|4EXB|F Chain F, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
Length = 292
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 118 IVVHSDNEELQ-LGVDESY-TLLVAKNEGLSIIGEATIEANTVYGALRGLE 166
++VHSD +L L E Y TL K EGL IG + TV G LR L
Sbjct: 154 VLVHSDGNDLDILENSEVYPTLAALKREGL--IGAYGLSGKTVEGGLRALR 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,364,293
Number of Sequences: 62578
Number of extensions: 530392
Number of successful extensions: 1155
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 37
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)