Query 014971
Match_columns 415
No_of_seqs 207 out of 1510
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 3.5E-77 7.6E-82 599.0 33.9 376 24-413 19-410 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 5.7E-63 1.2E-67 498.1 22.7 217 196-414 1-229 (348)
3 cd06570 GH20_chitobiase-like_1 100.0 1.2E-62 2.5E-67 488.1 22.7 211 196-408 1-223 (311)
4 cd06563 GH20_chitobiase-like T 100.0 7.1E-62 1.5E-66 491.8 22.9 214 196-414 1-242 (357)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 1.2E-61 2.7E-66 501.3 23.1 208 192-399 1-268 (445)
6 PF00728 Glyco_hydro_20: Glyco 100.0 6E-60 1.3E-64 474.6 15.1 220 196-415 1-239 (351)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 1.3E-57 2.8E-62 471.9 27.1 274 131-413 204-509 (732)
8 cd06568 GH20_SpHex_like A subg 100.0 7.1E-57 1.5E-61 450.3 20.3 195 196-408 1-211 (329)
9 cd02742 GH20_hexosaminidase Be 100.0 1.1E-55 2.3E-60 437.6 19.7 198 198-414 1-210 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 1.5E-52 3.3E-57 419.0 19.5 201 197-415 1-223 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 6.9E-48 1.5E-52 381.4 21.0 204 198-414 1-211 (301)
12 PF14845 Glycohydro_20b2: beta 99.7 2.7E-17 5.8E-22 143.3 12.2 122 41-171 1-128 (128)
13 PF02838 Glyco_hydro_20b: Glyc 99.6 3.6E-15 7.7E-20 128.6 13.5 123 39-193 2-124 (124)
14 PF07555 NAGidase: beta-N-acet 98.0 7.3E-05 1.6E-09 74.6 13.2 144 199-384 1-148 (306)
15 PF02638 DUF187: Glycosyl hydr 97.7 0.0032 7E-08 63.1 18.1 183 198-385 2-220 (311)
16 PF13200 DUF4015: Putative gly 96.8 0.042 9E-07 55.3 15.3 162 212-388 12-190 (316)
17 COG1649 Uncharacterized protei 95.7 0.9 1.9E-05 47.4 18.3 136 196-333 45-199 (418)
18 PF10566 Glyco_hydro_97: Glyco 95.5 0.035 7.5E-07 54.7 6.7 114 207-330 26-148 (273)
19 smart00642 Aamy Alpha-amylase 95.2 0.16 3.4E-06 46.4 9.5 75 211-292 17-97 (166)
20 PF02449 Glyco_hydro_42: Beta- 95.0 0.13 2.9E-06 52.5 9.6 129 210-356 7-149 (374)
21 PF14871 GHL6: Hypothetical gl 95.0 0.24 5.1E-06 43.6 9.7 110 216-334 3-125 (132)
22 PRK12313 glycogen branching en 94.5 0.52 1.1E-05 51.8 13.3 117 209-332 166-301 (633)
23 TIGR02402 trehalose_TreZ malto 94.2 0.59 1.3E-05 50.5 12.6 72 212-291 110-186 (542)
24 KOG3698 Hyaluronoglucosaminida 94.1 0.13 2.9E-06 54.7 7.1 75 200-288 20-97 (891)
25 TIGR01515 branching_enzym alph 93.7 0.64 1.4E-05 51.0 12.0 113 212-332 155-287 (613)
26 PF00150 Cellulase: Cellulase 93.6 0.54 1.2E-05 45.0 9.9 160 197-393 9-172 (281)
27 PLN02447 1,4-alpha-glucan-bran 93.5 3.8 8.1E-05 46.1 17.4 167 210-393 247-445 (758)
28 TIGR02104 pulA_typeI pullulana 93.3 2.7 5.9E-05 46.0 16.0 133 198-332 148-311 (605)
29 PRK05402 glycogen branching en 93.2 1.1 2.4E-05 50.2 13.0 117 209-332 261-396 (726)
30 PRK14705 glycogen branching en 93.2 0.98 2.1E-05 53.1 12.7 110 215-332 768-896 (1224)
31 PRK12568 glycogen branching en 93.1 1 2.2E-05 50.3 12.2 116 209-332 265-400 (730)
32 PF00128 Alpha-amylase: Alpha 93.1 0.18 3.8E-06 48.7 5.7 74 212-292 3-79 (316)
33 COG3661 AguA Alpha-glucuronida 92.2 6.8 0.00015 41.1 15.8 177 127-342 89-288 (684)
34 PRK14706 glycogen branching en 92.0 1.4 3.1E-05 48.5 11.6 116 209-332 163-298 (639)
35 TIGR02403 trehalose_treC alpha 91.4 0.86 1.9E-05 49.2 9.0 74 211-291 25-101 (543)
36 TIGR02100 glgX_debranch glycog 91.1 2.2 4.7E-05 47.5 12.0 107 218-332 189-333 (688)
37 PRK03705 glycogen debranching 90.7 2.4 5.2E-05 46.9 11.8 108 218-333 184-329 (658)
38 PLN02361 alpha-amylase 89.9 5.5 0.00012 41.5 13.0 112 212-329 28-168 (401)
39 PLN02960 alpha-amylase 89.8 1.3 2.7E-05 50.3 8.6 116 209-332 412-548 (897)
40 PF02065 Melibiase: Melibiase; 89.8 2.2 4.7E-05 44.4 9.9 121 210-339 55-189 (394)
41 PF03648 Glyco_hydro_67N: Glyc 89.6 2 4.4E-05 36.9 8.2 34 131-167 88-121 (122)
42 TIGR02401 trehalose_TreY malto 89.0 2 4.4E-05 48.5 9.5 77 209-292 12-92 (825)
43 PRK10785 maltodextrin glucosid 89.0 1.8 4E-05 47.3 9.1 79 207-292 171-253 (598)
44 PRK14511 maltooligosyl trehalo 88.7 2 4.2E-05 48.9 9.2 76 210-292 17-96 (879)
45 TIGR02456 treS_nterm trehalose 88.4 1.8 4E-05 46.6 8.6 74 211-292 26-103 (539)
46 TIGR02102 pullulan_Gpos pullul 88.4 10 0.00022 44.5 14.9 120 211-332 478-634 (1111)
47 COG0296 GlgB 1,4-alpha-glucan 88.1 2 4.3E-05 47.1 8.5 84 201-292 150-241 (628)
48 PRK09441 cytoplasmic alpha-amy 87.8 2.4 5.2E-05 45.0 8.8 77 212-291 21-107 (479)
49 PLN02784 alpha-amylase 87.4 3.4 7.3E-05 46.9 9.9 87 198-292 506-595 (894)
50 PLN02877 alpha-amylase/limit d 87.3 17 0.00038 41.9 15.6 28 263-291 465-492 (970)
51 PRK10933 trehalose-6-phosphate 87.0 2.8 6E-05 45.4 8.9 75 211-292 31-108 (551)
52 PRK14510 putative bifunctional 86.1 8.4 0.00018 45.8 12.8 111 217-330 191-333 (1221)
53 PRK14507 putative bifunctional 85.0 6.4 0.00014 47.9 11.2 77 208-291 753-833 (1693)
54 PLN00196 alpha-amylase; Provis 83.6 5.5 0.00012 41.8 9.0 75 212-292 43-119 (428)
55 cd06593 GH31_xylosidase_YicI Y 83.5 6.5 0.00014 39.0 9.1 123 194-330 7-147 (308)
56 KOG0470 1,4-alpha-glucan branc 83.2 4 8.8E-05 45.1 7.8 107 215-330 257-392 (757)
57 PF14701 hDGE_amylase: glucano 81.5 24 0.00052 37.1 12.5 91 212-303 21-118 (423)
58 PF01055 Glyco_hydro_31: Glyco 79.3 20 0.00043 37.3 11.3 135 193-341 25-178 (441)
59 COG1874 LacA Beta-galactosidas 78.4 32 0.0007 38.3 12.9 125 210-349 27-167 (673)
60 TIGR02103 pullul_strch alpha-1 77.9 38 0.00083 39.0 13.7 28 264-292 404-431 (898)
61 TIGR02455 TreS_stutzeri trehal 77.0 7.7 0.00017 42.8 7.5 71 216-292 77-157 (688)
62 cd06594 GH31_glucosidase_YihQ 76.6 7.7 0.00017 39.0 7.0 128 193-328 6-151 (317)
63 cd06598 GH31_transferase_CtsZ 76.4 9.7 0.00021 38.2 7.7 125 193-330 6-152 (317)
64 COG0436 Aspartate/tyrosine/aro 75.4 9.7 0.00021 39.4 7.6 26 258-283 177-202 (393)
65 cd06592 GH31_glucosidase_KIAA1 75.3 21 0.00045 35.5 9.7 109 208-329 25-151 (303)
66 PF13199 Glyco_hydro_66: Glyco 75.0 16 0.00034 39.8 9.2 185 191-395 97-310 (559)
67 PF07745 Glyco_hydro_53: Glyco 73.5 49 0.0011 33.7 11.9 107 216-350 27-142 (332)
68 PLN02187 rooty/superroot1 72.9 13 0.00027 39.3 7.9 24 258-281 218-241 (462)
69 PRK09505 malS alpha-amylase; R 71.2 19 0.00041 40.2 8.9 79 212-291 229-318 (683)
70 PLN03244 alpha-amylase; Provis 70.5 17 0.00037 41.1 8.3 70 262-332 439-523 (872)
71 PLN00145 tyrosine/nicotianamin 69.5 13 0.00028 38.7 7.0 25 258-282 204-228 (430)
72 PLN02368 alanine transaminase 69.4 13 0.00029 38.5 7.0 25 258-282 224-248 (407)
73 PRK07590 L,L-diaminopimelate a 67.7 26 0.00057 35.9 8.7 25 257-281 189-213 (409)
74 PRK14582 pgaB outer membrane N 67.0 2.2E+02 0.0047 31.9 19.5 177 198-384 314-528 (671)
75 cd06602 GH31_MGAM_SI_GAA This 67.0 1.1E+02 0.0024 31.0 12.9 114 208-331 19-153 (339)
76 PRK09257 aromatic amino acid a 66.8 27 0.0006 35.6 8.6 25 258-282 186-210 (396)
77 PRK06348 aspartate aminotransf 66.0 16 0.00035 37.1 6.7 24 258-281 176-199 (384)
78 PRK09147 succinyldiaminopimela 65.8 18 0.00039 36.9 7.0 24 258-281 180-203 (396)
79 PLN00143 tyrosine/nicotianamin 65.6 21 0.00046 36.7 7.6 24 258-281 184-207 (409)
80 PRK07681 aspartate aminotransf 65.2 22 0.00047 36.4 7.5 24 258-281 180-203 (399)
81 TIGR03234 OH-pyruv-isom hydrox 64.7 12 0.00026 35.7 5.2 76 197-284 68-143 (254)
82 KOG0258 Alanine aminotransfera 63.6 23 0.0005 36.8 7.1 166 151-364 139-314 (475)
83 TIGR01531 glyc_debranch glycog 63.5 28 0.00061 41.8 8.6 82 212-300 131-223 (1464)
84 PTZ00377 alanine aminotransfer 63.2 28 0.00061 36.7 8.1 24 258-281 232-255 (481)
85 PRK05301 pyrroloquinoline quin 63.0 25 0.00054 35.8 7.5 58 207-289 43-100 (378)
86 PRK07337 aminotransferase; Val 63.0 26 0.00057 35.5 7.6 26 258-283 177-202 (388)
87 PF01261 AP_endonuc_2: Xylose 62.7 29 0.00063 31.1 7.2 63 212-284 70-132 (213)
88 PRK05839 hypothetical protein; 62.0 61 0.0013 32.8 10.1 24 258-281 169-192 (374)
89 cd06595 GH31_xylosidase_XylS-l 61.6 27 0.00059 34.5 7.2 128 193-329 7-146 (292)
90 TIGR03537 DapC succinyldiamino 60.9 26 0.00056 35.0 7.0 24 258-281 150-173 (350)
91 PRK08636 aspartate aminotransf 60.8 66 0.0014 32.9 10.1 25 257-281 188-212 (403)
92 PF01212 Beta_elim_lyase: Beta 60.7 38 0.00081 33.6 8.0 59 208-281 104-162 (290)
93 PTZ00433 tyrosine aminotransfe 60.6 27 0.00058 35.9 7.2 24 258-281 191-214 (412)
94 PF03198 Glyco_hydro_72: Gluca 60.3 1.4E+02 0.003 30.3 11.7 125 212-388 52-176 (314)
95 TIGR02109 PQQ_syn_pqqE coenzym 60.1 27 0.00059 35.2 7.1 59 207-290 34-92 (358)
96 PRK08068 transaminase; Reviewe 59.7 23 0.0005 36.0 6.5 25 257-281 180-204 (389)
97 PRK08960 hypothetical protein; 59.1 27 0.00058 35.5 6.8 25 258-282 179-203 (387)
98 cd06591 GH31_xylosidase_XylS X 58.7 71 0.0015 32.0 9.7 122 194-327 7-143 (319)
99 TIGR03542 DAPAT_plant LL-diami 57.6 68 0.0015 32.7 9.6 25 257-281 186-210 (402)
100 PLN02231 alanine transaminase 56.4 44 0.00095 36.1 8.2 26 257-282 284-309 (534)
101 PF05913 DUF871: Bacterial pro 56.2 36 0.00078 35.0 7.1 60 211-289 12-71 (357)
102 PRK09265 aminotransferase AlaT 56.2 62 0.0013 33.0 9.0 25 258-282 182-206 (404)
103 PRK09276 LL-diaminopimelate am 55.7 50 0.0011 33.4 8.1 24 258-281 180-203 (385)
104 KOG0259 Tyrosine aminotransfer 55.4 20 0.00043 37.2 5.0 78 213-291 137-245 (447)
105 cd06600 GH31_MGAM-like This fa 55.4 1.1E+02 0.0024 30.6 10.4 110 208-329 19-146 (317)
106 PRK02308 uvsE putative UV dama 55.2 2E+02 0.0044 28.7 12.2 63 259-341 86-156 (303)
107 TIGR01182 eda Entner-Doudoroff 55.1 25 0.00054 33.3 5.4 119 211-343 18-158 (204)
108 PLN02376 1-aminocyclopropane-1 54.9 52 0.0011 35.2 8.4 25 258-282 213-237 (496)
109 PF03102 NeuB: NeuB family; I 54.9 72 0.0016 30.9 8.6 25 260-284 52-76 (241)
110 PRK06552 keto-hydroxyglutarate 54.8 24 0.00053 33.5 5.3 118 211-342 23-164 (213)
111 PRK09275 aspartate aminotransf 54.8 59 0.0013 35.2 8.8 25 257-281 254-280 (527)
112 cd06565 GH20_GcnA-like Glycosy 54.4 9.8 0.00021 37.9 2.6 65 161-230 12-77 (301)
113 PRK09856 fructoselysine 3-epim 53.6 2.1E+02 0.0045 27.3 12.5 51 214-281 14-64 (275)
114 TIGR03540 DapC_direct LL-diami 53.2 52 0.0011 33.2 7.8 24 258-281 178-201 (383)
115 cd00452 KDPG_aldolase KDPG and 52.9 12 0.00026 34.5 2.9 121 211-342 14-152 (190)
116 PRK07366 succinyldiaminopimela 52.8 43 0.00093 33.9 7.2 25 257-281 178-202 (388)
117 PRK07324 transaminase; Validat 52.7 1.5E+02 0.0032 30.1 11.0 26 258-283 167-192 (373)
118 PF01301 Glyco_hydro_35: Glyco 52.6 39 0.00085 34.0 6.7 70 210-291 21-90 (319)
119 COG0366 AmyA Glycosidases [Car 52.5 50 0.0011 34.4 7.8 73 212-291 28-103 (505)
120 PRK07683 aminotransferase A; V 52.4 39 0.00085 34.3 6.8 24 258-281 175-198 (387)
121 PRK10076 pyruvate formate lyas 52.0 73 0.0016 30.2 8.1 67 210-281 142-210 (213)
122 PRK06290 aspartate aminotransf 51.7 56 0.0012 33.8 7.9 25 257-281 192-216 (410)
123 PRK08363 alanine aminotransfer 51.7 59 0.0013 33.1 8.0 24 258-281 180-203 (398)
124 PRK01060 endonuclease IV; Prov 51.2 65 0.0014 31.0 7.8 59 200-280 5-63 (281)
125 PRK13355 bifunctional HTH-doma 50.9 54 0.0012 35.0 7.8 24 258-281 295-318 (517)
126 TIGR03538 DapC_gpp succinyldia 50.8 46 0.001 33.8 7.0 24 258-281 179-202 (393)
127 PRK05942 aspartate aminotransf 50.7 50 0.0011 33.6 7.2 24 258-281 184-207 (394)
128 cd06589 GH31 The enzymes of gl 49.8 36 0.00078 33.0 5.8 79 194-285 7-87 (265)
129 KOG0256 1-aminocyclopropane-1- 49.2 92 0.002 32.8 8.6 97 164-283 158-265 (471)
130 PTZ00376 aspartate aminotransf 48.8 1.3E+02 0.0028 30.8 10.0 24 258-281 190-213 (404)
131 PRK06108 aspartate aminotransf 48.7 56 0.0012 32.7 7.2 24 258-281 172-195 (382)
132 PLN02656 tyrosine transaminase 48.4 54 0.0012 33.7 7.1 24 258-281 183-206 (409)
133 PF05089 NAGLU: Alpha-N-acetyl 48.4 21 0.00045 36.3 3.9 65 267-333 98-171 (333)
134 TIGR03801 asp_4_decarbox aspar 48.1 93 0.002 33.7 9.0 25 257-281 253-279 (521)
135 COG1167 ARO8 Transcriptional r 48.0 1.1E+02 0.0024 32.2 9.5 31 257-288 240-270 (459)
136 PRK07568 aspartate aminotransf 47.2 1.3E+02 0.0029 30.3 9.7 24 258-281 176-199 (397)
137 PLN02672 methionine S-methyltr 46.7 64 0.0014 38.0 7.9 60 222-281 795-866 (1082)
138 COG2100 Predicted Fe-S oxidore 46.6 49 0.0011 33.8 6.0 51 205-277 234-284 (414)
139 PRK09856 fructoselysine 3-epim 46.5 71 0.0015 30.6 7.3 65 211-287 88-152 (275)
140 PRK10658 putative alpha-glucos 46.1 1.2E+02 0.0025 33.9 9.6 125 194-331 264-407 (665)
141 PRK06358 threonine-phosphate d 45.6 94 0.002 31.2 8.3 25 257-281 154-178 (354)
142 PLN02450 1-aminocyclopropane-1 45.5 43 0.00093 35.4 5.9 24 258-281 205-228 (468)
143 TIGR01866 cas_Csn2 CRISPR-asso 45.3 47 0.001 31.7 5.6 65 196-282 132-196 (216)
144 PLN02607 1-aminocyclopropane-1 44.1 1.8E+02 0.0038 30.6 10.3 62 204-281 175-237 (447)
145 PF14488 DUF4434: Domain of un 43.8 2.4E+02 0.0051 25.6 9.8 71 209-286 16-87 (166)
146 PLN03059 beta-galactosidase; P 42.6 4.7E+02 0.01 30.2 13.6 81 187-284 36-118 (840)
147 COG1523 PulA Type II secretory 42.5 1.9E+02 0.004 32.6 10.4 108 219-330 206-349 (697)
148 PRK13210 putative L-xylulose 5 42.4 3.1E+02 0.0068 26.1 13.9 61 213-289 16-76 (284)
149 smart00633 Glyco_10 Glycosyl h 42.2 68 0.0015 30.9 6.3 64 258-335 10-73 (254)
150 COG1306 Uncharacterized conser 42.1 66 0.0014 32.4 6.1 113 212-330 76-207 (400)
151 PF02679 ComA: (2R)-phospho-3- 42.0 57 0.0012 31.8 5.7 50 213-284 84-133 (244)
152 TIGR01265 tyr_nico_aTase tyros 41.6 78 0.0017 32.3 7.0 26 258-283 183-208 (403)
153 COG3977 Alanine-alpha-ketoisov 41.6 13 0.00028 37.5 1.1 128 132-283 88-218 (417)
154 cd06603 GH31_GANC_GANAB_alpha 41.5 1.1E+02 0.0024 30.8 8.0 109 208-330 19-147 (339)
155 COG0134 TrpC Indole-3-glycerol 41.1 41 0.00088 33.0 4.5 74 260-340 139-212 (254)
156 COG1168 MalY Bifunctional PLP- 40.8 31 0.00068 35.6 3.8 27 258-284 172-199 (388)
157 TIGR00542 hxl6Piso_put hexulos 40.7 3.4E+02 0.0073 26.1 13.4 54 213-281 16-69 (279)
158 PF01565 FAD_binding_4: FAD bi 40.3 35 0.00076 29.2 3.6 29 262-292 9-37 (139)
159 PLN00175 aminotransferase fami 39.8 1.1E+02 0.0024 31.5 7.9 24 258-281 201-224 (413)
160 PRK06015 keto-hydroxyglutarate 39.5 38 0.00081 32.0 3.9 78 211-291 14-111 (201)
161 smart00518 AP2Ec AP endonuclea 39.4 1.2E+02 0.0027 28.9 7.7 51 215-281 12-62 (273)
162 PRK05718 keto-hydroxyglutarate 39.3 36 0.00079 32.3 3.8 79 210-291 24-122 (212)
163 PTZ00372 endonuclease 4-like p 39.3 2.4E+02 0.0051 29.7 10.1 62 200-283 134-195 (413)
164 PRK10626 hypothetical protein; 38.8 1.2E+02 0.0026 29.4 7.3 79 12-90 2-84 (239)
165 PRK07550 hypothetical protein; 38.0 1.8E+02 0.0038 29.4 8.9 24 258-281 177-200 (386)
166 PRK13957 indole-3-glycerol-pho 37.4 41 0.00089 32.8 3.9 73 260-339 134-206 (247)
167 cd06604 GH31_glucosidase_II_Ma 36.6 1.6E+02 0.0034 29.7 8.2 110 208-330 19-147 (339)
168 COG3693 XynA Beta-1,4-xylanase 36.2 39 0.00084 34.3 3.6 65 258-334 76-140 (345)
169 cd06601 GH31_lyase_GLase GLase 36.0 3.8E+02 0.0083 27.1 10.8 109 200-330 12-121 (332)
170 PF03851 UvdE: UV-endonuclease 35.7 61 0.0013 32.1 4.9 20 262-281 85-104 (275)
171 PF13380 CoA_binding_2: CoA bi 35.6 85 0.0018 26.6 5.2 101 151-281 3-106 (116)
172 COG1217 TypA Predicted membran 35.0 23 0.00051 37.7 1.9 21 272-292 48-81 (603)
173 TIGR03586 PseI pseudaminic aci 34.9 1.4E+02 0.003 30.3 7.4 83 206-292 9-105 (327)
174 PF07488 Glyco_hydro_67M: Glyc 34.8 3.2E+02 0.0069 27.7 9.6 118 188-334 13-150 (328)
175 TIGR00542 hxl6Piso_put hexulos 34.4 54 0.0012 31.7 4.3 61 212-284 93-153 (279)
176 PTZ00372 endonuclease 4-like p 34.2 72 0.0016 33.5 5.3 80 199-284 303-391 (413)
177 cd01299 Met_dep_hydrolase_A Me 34.0 2.3E+02 0.0051 27.9 8.9 65 211-286 118-182 (342)
178 PRK00278 trpC indole-3-glycero 34.0 1.5E+02 0.0032 28.9 7.3 46 218-287 125-170 (260)
179 PRK08361 aspartate aminotransf 33.7 1.8E+02 0.004 29.4 8.3 24 258-281 180-203 (391)
180 TIGR03849 arch_ComA phosphosul 33.6 1.3E+02 0.0029 29.1 6.7 50 213-284 71-120 (237)
181 KOG0462 Elongation factor-type 33.1 37 0.0008 36.9 3.0 31 262-292 92-138 (650)
182 TIGR01418 PEP_synth phosphoeno 33.0 2.3E+02 0.005 32.3 9.5 144 191-365 590-761 (782)
183 cd06597 GH31_transferase_CtsY 32.9 4.2E+02 0.0091 26.8 10.6 130 194-330 7-174 (340)
184 PRK09148 aminotransferase; Val 32.7 1.8E+02 0.004 29.7 8.1 25 257-281 178-202 (405)
185 TIGR02668 moaA_archaeal probab 32.6 1E+02 0.0022 30.3 5.9 58 207-289 37-95 (302)
186 PF13204 DUF4038: Protein of u 31.2 2.2E+02 0.0049 28.1 8.1 69 211-281 28-105 (289)
187 cd02874 GH18_CFLE_spore_hydrol 31.1 3.7E+02 0.0079 26.5 9.7 90 267-388 48-140 (313)
188 KOG0464 Elongation factor G [T 30.7 45 0.00098 35.1 3.1 28 265-292 75-115 (753)
189 COG0320 LipA Lipoate synthase 30.7 3.5E+02 0.0076 27.1 9.1 113 150-279 150-282 (306)
190 PF14542 Acetyltransf_CG: GCN5 30.6 52 0.0011 25.9 2.9 38 260-300 38-75 (78)
191 cd00765 Pyrophosphate_PFK Phos 30.2 4.2E+02 0.0091 29.0 10.5 109 200-346 138-252 (550)
192 PRK07114 keto-hydroxyglutarate 30.1 67 0.0015 30.8 4.0 79 211-292 25-127 (222)
193 COG3589 Uncharacterized conser 29.7 1.7E+02 0.0036 30.0 6.8 60 210-288 13-72 (360)
194 PLN02951 Molybderin biosynthes 29.6 1.8E+02 0.0039 29.9 7.3 59 208-290 88-147 (373)
195 TIGR01264 tyr_amTase_E tyrosin 29.5 2.1E+02 0.0046 29.0 7.9 24 258-281 182-205 (401)
196 PF02836 Glyco_hydro_2_C: Glyc 29.0 3.6E+02 0.0079 26.3 9.2 99 209-342 32-159 (298)
197 cd02875 GH18_chitobiase Chitob 28.6 1.9E+02 0.0042 29.4 7.4 82 267-385 67-149 (358)
198 PRK07085 diphosphate--fructose 28.6 4.1E+02 0.0089 29.1 10.1 103 200-338 136-244 (555)
199 PRK13505 formate--tetrahydrofo 27.8 1.6E+02 0.0036 32.0 6.8 49 212-282 358-406 (557)
200 PRK08056 threonine-phosphate d 27.6 2.3E+02 0.0049 28.3 7.6 24 258-281 156-179 (356)
201 PF09183 DUF1947: Domain of un 27.4 40 0.00086 26.1 1.6 23 206-228 1-24 (65)
202 COG1820 NagA N-acetylglucosami 27.3 53 0.0011 34.1 2.9 64 211-285 99-173 (380)
203 PRK13210 putative L-xylulose 5 27.0 81 0.0018 30.3 4.1 61 212-284 93-153 (284)
204 PF01244 Peptidase_M19: Membra 26.9 1.4E+02 0.0029 30.2 5.8 87 258-369 211-306 (320)
205 PRK09989 hypothetical protein; 26.9 1.3E+02 0.0028 28.8 5.4 78 199-295 173-252 (258)
206 PRK13209 L-xylulose 5-phosphat 26.7 78 0.0017 30.5 3.9 60 212-284 98-158 (283)
207 TIGR02717 AcCoA-syn-alpha acet 26.7 4.5E+02 0.0098 27.7 9.9 114 151-282 10-127 (447)
208 cd00019 AP2Ec AP endonuclease 26.2 60 0.0013 31.3 3.1 62 210-284 82-143 (279)
209 KOG3625 Alpha amylase [Carbohy 25.9 5.2E+02 0.011 30.4 10.3 162 211-382 140-312 (1521)
210 PLN02251 pyrophosphate-depende 25.8 6.8E+02 0.015 27.6 11.1 153 151-339 101-271 (568)
211 cd00363 PFK Phosphofructokinas 25.8 5.3E+02 0.012 26.1 9.9 157 199-396 63-233 (338)
212 COG1313 PflX Uncharacterized F 25.5 1.4E+02 0.0031 30.0 5.4 59 215-282 273-333 (335)
213 cd09013 BphC-JF8_N_like N-term 25.4 70 0.0015 26.2 2.9 32 262-293 72-103 (121)
214 COG0826 Collagenase and relate 25.3 90 0.0019 32.0 4.2 35 259-293 44-78 (347)
215 COG5532 Uncharacterized conser 25.1 52 0.0011 31.5 2.2 51 240-292 36-100 (269)
216 PRK13125 trpA tryptophan synth 25.1 2E+02 0.0043 27.5 6.4 52 212-286 87-138 (244)
217 PF10141 ssDNA-exonuc_C: Singl 25.1 3.4E+02 0.0073 25.1 7.7 81 211-328 63-143 (195)
218 PRK05764 aspartate aminotransf 25.0 1.1E+02 0.0025 30.7 5.0 25 258-282 178-202 (393)
219 PRK13209 L-xylulose 5-phosphat 24.6 6.2E+02 0.013 24.1 13.8 133 214-390 22-156 (283)
220 TIGR02477 PFKA_PPi diphosphate 24.5 6E+02 0.013 27.7 10.4 104 200-339 133-242 (539)
221 PRK13111 trpA tryptophan synth 24.0 2.5E+02 0.0054 27.4 6.9 50 214-290 105-154 (258)
222 PRK14467 ribosomal RNA large s 23.8 1.7E+02 0.0036 30.0 5.8 59 211-283 266-324 (348)
223 COG2100 Predicted Fe-S oxidore 23.4 3.9E+02 0.0085 27.5 8.0 107 148-288 160-267 (414)
224 COG4108 PrfC Peptide chain rel 23.3 47 0.001 35.3 1.7 37 258-297 50-99 (528)
225 PRK14465 ribosomal RNA large s 23.0 3.5E+02 0.0075 27.7 7.9 73 192-284 219-293 (342)
226 COG2008 GLY1 Threonine aldolas 23.0 68 0.0015 32.8 2.7 23 258-280 144-166 (342)
227 COG0481 LepA Membrane GTPase L 22.8 71 0.0015 34.3 2.9 32 262-293 41-90 (603)
228 COG0277 GlcD FAD/FMN-containin 22.7 82 0.0018 32.5 3.5 30 260-291 38-67 (459)
229 COG5587 Uncharacterized conser 22.6 1.2E+02 0.0026 28.3 4.0 51 334-388 104-156 (228)
230 TIGR03234 OH-pyruv-isom hydrox 22.1 1.5E+02 0.0033 28.0 4.9 67 199-284 172-238 (254)
231 cd06564 GH20_DspB_LnbB-like Gl 22.0 79 0.0017 31.7 3.0 26 205-230 74-99 (326)
232 TIGR00387 glcD glycolate oxida 22.0 83 0.0018 32.7 3.3 27 262-290 6-32 (413)
233 COG2984 ABC-type uncharacteriz 21.8 1.1E+02 0.0024 31.0 3.9 30 255-284 166-195 (322)
234 PF13394 Fer4_14: 4Fe-4S singl 21.7 1.2E+02 0.0025 25.0 3.6 58 207-282 26-85 (119)
235 PRK05967 cystathionine beta-ly 21.6 1.1E+02 0.0023 31.9 4.0 25 259-283 161-185 (395)
236 TIGR00190 thiC thiamine biosyn 21.6 91 0.002 32.6 3.3 24 266-291 245-268 (423)
237 cd00609 AAT_like Aspartate ami 21.5 2.9E+02 0.0063 26.6 6.9 26 258-283 146-171 (350)
238 COG1082 IolE Sugar phosphate i 21.5 2.2E+02 0.0047 26.9 5.9 79 198-286 171-253 (274)
239 PRK01060 endonuclease IV; Prov 21.2 2.2E+02 0.0047 27.3 5.9 39 200-238 175-219 (281)
240 PRK10426 alpha-glucosidase; Pr 21.1 2.9E+02 0.0063 30.6 7.4 127 193-327 204-347 (635)
241 PRK15481 transcriptional regul 21.0 5.3E+02 0.011 26.5 9.0 24 258-281 226-250 (431)
242 TIGR03128 RuMP_HxlA 3-hexulose 21.0 3.5E+02 0.0075 24.7 7.0 46 218-288 68-113 (206)
243 TIGR03569 NeuB_NnaB N-acetylne 21.0 3.7E+02 0.0079 27.4 7.6 78 211-292 14-104 (329)
244 cd07201 cPLA2_Grp-IVB-IVD-IVE- 20.9 1.1E+02 0.0024 33.2 4.0 52 231-286 372-432 (541)
245 PF02679 ComA: (2R)-phospho-3- 20.8 2.6E+02 0.0056 27.3 6.2 64 194-282 9-72 (244)
246 smart00481 POLIIIAc DNA polyme 20.5 3.3E+02 0.0072 20.0 5.6 47 214-285 16-62 (67)
247 COG3280 TreY Maltooligosyl tre 20.3 4.1E+02 0.009 30.3 8.1 73 207-292 13-95 (889)
248 PRK15447 putative protease; Pr 20.3 2.9E+02 0.0063 27.5 6.6 57 209-283 11-67 (301)
249 PRK15452 putative protease; Pr 20.2 1.3E+02 0.0028 31.9 4.3 33 259-291 41-73 (443)
250 PF00682 HMGL-like: HMGL-like 20.2 7.1E+02 0.015 23.2 9.9 58 212-291 107-164 (237)
251 PRK11194 ribosomal RNA large s 20.1 2.3E+02 0.0049 29.3 6.0 54 211-282 276-331 (372)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-77 Score=598.99 Aligned_cols=376 Identities=42% Similarity=0.684 Sum_probs=296.8
Q ss_pred HHhcCCCccccCCCCCceeecccEEEEcCC-eEEeCCCeEEEEC-CCCchHHHHHHHHHHHHHHHhhhhccccccccccc
Q 014971 24 FTSSLSVSTDVDDSLAYIWPLPAQFSSGND-TLSVDPALCLSVS-GKGSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFN 101 (415)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~P~P~~~~~~~~-~~~l~~~~~i~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 101 (415)
+.++++.......+...+||.|+.+..++. .-.+.. +++.++ +....++++.++++||..+++....-.. +
T Consensus 19 v~l~~~~~~~~~~p~~~lWP~P~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~il~a~~~ry~~~i~~~~~~~~------p 91 (542)
T KOG2499|consen 19 VTLTLADDFAIRAPVGALWPLPRTFSCGDELAPEIFY-SQIDINLGAGKGCAILRAAFDRYMNIIFGRVEWDP------P 91 (542)
T ss_pred hheeecccccccCCccccccCCccccccccccccccc-eeecccccCCcchhHHHHHHHHHhhhhhcccccCC------c
Confidence 344455333333333379999999999887 222221 122222 1234568999999999999987531110 0
Q ss_pred cccccCCCCcccceeEEEEecC-cccc-cCCCCCCeEEEEecCCCcccceeEEEEECChHhHHHHHHHHHhhcccCCCCc
Q 014971 102 NFRKRRSRGFDIGTLKIVVHSD-NEEL-QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTK 179 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~ 179 (415)
..............+.++++.. +..+ ..++||+|+|.|+.+.. .+.|.|++++||+||+|||+||+..+..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~c~s~p~l~~~dEsYtL~V~~~~~-----~a~i~A~tvwGAlrglETfSqLv~~d~~~~ 166 (542)
T KOG2499|consen 92 LLSFHVKLGGEAALITLTVTVECPSLPTLHGVDESYTLVVSTTAT-----FAVILANTVWGALRGLETFSQLVWGDSIGG 166 (542)
T ss_pred cceeeeeccceEEEEEEeecCCCCCcCcccccccceEEEeecCcc-----eEEEeehhHHHHHHHHHHHHHHheeccCCc
Confidence 0000000111111222333322 2222 34569999999985532 589999999999999999999999887655
Q ss_pred eeEeeccceEEecCCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCCC
Q 014971 180 SVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKW 258 (415)
Q Consensus 180 ~~~~~~~~~~I~D~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~~ 258 (415)
.+.+. ++.|.|.|+|+|||+|||+||||+|++.||+.||.||++|+|+||||++|+||||+|++++|||. +|+|+.+
T Consensus 167 ~~~~~--~~~I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~ 244 (542)
T KOG2499|consen 167 LFMIA--TAYIQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPR 244 (542)
T ss_pred eEEee--eeeEeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcc
Confidence 44333 46999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCC-CC--CCCC----CCcCCCCChhHHHHHHHHHHHHhhc
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNL-WP--SPSC----REPLDVSKNFTFEVISGILSDLRKI 331 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l-~~--~~~~----~~~ld~~~~~t~~fl~~l~~E~~~l 331 (415)
+.||.+|+.++|+||+.|||+|+||||+|||+++|..++|+| ++ +..| ..++||+++.+|+|+++++.|+.+.
T Consensus 245 ~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~ev 324 (542)
T KOG2499|consen 245 HVYTREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEV 324 (542)
T ss_pred eeecHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999996 22 1222 3479999999999999999999999
Q ss_pred CCCCeEEeCCCCCCCcCCCCCHHHHHHHHHCCCChH--HHHHHHHHHHHHHHHhCCCeEEEeccccCCCc--cccccccc
Q 014971 332 FPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAK--EAYQYFVLTAQKIAISKNWTPVNWFVLFCANE--IASSIFKF 407 (415)
Q Consensus 332 Fp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~--~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~--~~~~i~~~ 407 (415)
||..+||+|||||...||+++|++|+||+++|++.. .++.+|+++..+++...++++++|+|.+++.. ...+|+|-
T Consensus 325 Fp~~~~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~~i~p~tiiq~ 404 (542)
T KOG2499|consen 325 FPDEFFHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKRKIDPRTIIQI 404 (542)
T ss_pred CcHHHeecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccccccCCCCceeee
Confidence 999999999999999999999999999999998654 68899999999999999999999999999873 56677776
Q ss_pred ceeecc
Q 014971 408 ALPLDF 413 (415)
Q Consensus 408 ~~p~~~ 413 (415)
|.--+|
T Consensus 405 W~~~~~ 410 (542)
T KOG2499|consen 405 WKIGTW 410 (542)
T ss_pred eccCCc
Confidence 654433
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=5.7e-63 Score=498.07 Aligned_cols=217 Identities=45% Similarity=0.808 Sum_probs=201.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHH
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAK 274 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~~~~YT~~ei~~lv~yA~ 274 (415)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|+|+.+++||++|+++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HcCCEEEEeecCCcccchhhhcCCCCCCCC----------CCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCC
Q 014971 275 MRGINVMAEVDVPGHAESWGAGYPNLWPSP----------SCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEV 344 (415)
Q Consensus 275 ~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~----------~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv 344 (415)
+|||+||||||+|||+.+|+++||++.... .+..+|||++|+||+|+++|++|++++||++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 999999999999999999999999984321 1234799999999999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccceeeccc
Q 014971 345 NTDCWSSTPHVKKWLRDHKLTA-KEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFALPLDFH 414 (415)
Q Consensus 345 ~~~~w~~~p~~~~~~~~~g~~~-~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~~p~~~~ 414 (415)
...||.++|.|+++|+++|.+. .+++.+|++++.++++++|+++++|+|++.++. ..+.+..+.+.|+
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~--~~~~~~~iv~~W~ 229 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGV--YLLPKDTIVQVWG 229 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCC--ccCCCCeEEEECC
Confidence 9999999999999999999765 489999999999999999999999999998764 4566666666665
No 3
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.2e-62 Score=488.05 Aligned_cols=211 Identities=35% Similarity=0.691 Sum_probs=193.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHH
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAK 274 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~~~~YT~~ei~~lv~yA~ 274 (415)
|+|||+|||+||||+|+++||++||.||.+|||+||||+|||||||+|+++||+|+ +|+ .+++||++|+++|++||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~--~~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKAS--DGLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCC--CCCccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998 674 567999999999999999
Q ss_pred HcCCEEEEeecCCcccchhhhcCCCCCCCCC----------CCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCC
Q 014971 275 MRGINVMAEVDVPGHAESWGAGYPNLWPSPS----------CREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEV 344 (415)
Q Consensus 275 ~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~----------~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv 344 (415)
+|||+||||||+|||+.+|+++||+|..... ....|||++|+||+|+++|++|++++||++||||||||+
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~ 158 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEV 158 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCC
Confidence 9999999999999999999999999954211 124699999999999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccc
Q 014971 345 NTDCWSSTPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFA 408 (415)
Q Consensus 345 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~ 408 (415)
...||++||.|+++|+++|.+.. +++.+|++++.++++++||++++|+|++.....++.|.+.|
T Consensus 159 ~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~~l~~~~iv~~W 223 (311)
T cd06570 159 DPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHPDLPKNVVIQSW 223 (311)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCeEEEEe
Confidence 99999999999999999998654 89999999999999999999999999986554444454444
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7.1e-62 Score=491.79 Aligned_cols=214 Identities=35% Similarity=0.636 Sum_probs=197.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCC----------------C
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSK----------------W 258 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~----------------~ 258 (415)
|+|||+|||+||||+|+++||++||.||++|+|+|||||+||||||+|+++||+|+ .|+|+. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 89999999999999999999999999999999999999999999999999999999 888875 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCC----------CCCCcCCCCChhHHHHHHHHHHHH
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSP----------SCREPLDVSKNFTFEVISGILSDL 328 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~----------~~~~~ld~~~~~t~~fl~~l~~E~ 328 (415)
++||++|+++|++||++|||+||||||+|||+.+|+++||+|.... ....+|||++|+||+|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999995322 124579999999999999999999
Q ss_pred hhcCCCCeEEeCCCCCCCcCCCCCHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCccccccccc
Q 014971 329 RKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA-KEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKF 407 (415)
Q Consensus 329 ~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~-~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~ 407 (415)
+++||++||||||||+...||++||.|+++|+++|.+. .+++.+|++++.++++++|+++++|+|++..+ +.+.
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~-----l~~~ 235 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGG-----LPPN 235 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccC-----CCCC
Confidence 99999999999999999999999999999999999865 48999999999999999999999999998775 4555
Q ss_pred ceeeccc
Q 014971 408 ALPLDFH 414 (415)
Q Consensus 408 ~~p~~~~ 414 (415)
.+.+.|+
T Consensus 236 ~iv~~W~ 242 (357)
T cd06563 236 ATVMSWR 242 (357)
T ss_pred cEEEECC
Confidence 5666664
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.2e-61 Score=501.35 Aligned_cols=208 Identities=27% Similarity=0.543 Sum_probs=191.7
Q ss_pred cCCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCC--------------
Q 014971 192 DKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYS-------------- 256 (415)
Q Consensus 192 D~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~-------------- 256 (415)
|+|||+|||+|||+||||+|++.||++||.||++|||+||||||||||||+|+++||+|+ .|+|+
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 78763
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhc----CCCCCCCC-------------------
Q 014971 257 ---------KWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAG----YPNLWPSP------------------- 304 (415)
Q Consensus 257 ---------~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~----~p~l~~~~------------------- 304 (415)
.+++||++|+++||+||++|||+||||||+|||+.+++++ ||+|...+
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 2578999999999999999999999999999999999875 88873211
Q ss_pred -----CCCCcCCCCChhHHHHHHHHHHHHhhcC-----CCCeEEeCCCCCCCcCCCCCHHHH--HHHHHCCCCh-HHHHH
Q 014971 305 -----SCREPLDVSKNFTFEVISGILSDLRKIF-----PFELFHLGGDEVNTDCWSSTPHVK--KWLRDHKLTA-KEAYQ 371 (415)
Q Consensus 305 -----~~~~~ld~~~~~t~~fl~~l~~E~~~lF-----p~~~~HiGgDEv~~~~w~~~p~~~--~~~~~~g~~~-~~l~~ 371 (415)
.+..+|||++|+||+|+++|++|++++| |++||||||||++..||++||.|+ ++|+++|.+. .+++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 1234799999999999999999999999 679999999999999999999999 9999998865 58999
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccCCCc
Q 014971 372 YFVLTAQKIAISKNWTPVNWFVLFCANE 399 (415)
Q Consensus 372 ~f~~~~~~~v~~~g~~~~~W~d~~~~~~ 399 (415)
+|++++.++++++|+++++|+|++..+.
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~ 268 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKD 268 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCC
Confidence 9999999999999999999999998764
No 6
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=6e-60 Score=474.57 Aligned_cols=220 Identities=40% Similarity=0.756 Sum_probs=197.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCCCC---CCCHHHHHHHHH
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWE---RYTVEDAHEIVS 271 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~~~---~YT~~ei~~lv~ 271 (415)
|+|||+|||+||||+|+++||++||.||.+|+|+||||++|+||||++++++|+|+ .|+++... +||++|+++|++
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 88887755 999999999999
Q ss_pred HHHHcCCEEEEeecCCcccchhhhcCCCCCCC----------CCC----CCcCCCCChhHHHHHHHHHHHHhhcCCCCeE
Q 014971 272 FAKMRGINVMAEVDVPGHAESWGAGYPNLWPS----------PSC----REPLDVSKNFTFEVISGILSDLRKIFPFELF 337 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~----------~~~----~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~ 337 (415)
||++|||+||||||+|||+++|+++||++... ..+ ..+|||++|+|++|+++|++|++++||+++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 99999999999999999999999999988543 111 1369999999999999999999999999999
Q ss_pred EeCCCCCCCcCCCCCHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccceeecccC
Q 014971 338 HLGGDEVNTDCWSSTPHVKKWLRDHKLTA-KEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFALPLDFHS 415 (415)
Q Consensus 338 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~-~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~~p~~~~~ 415 (415)
||||||++..||+++|+|+++|+++|++. .+++.+|++++.++++++|+++++|+|++.+......+.+..+++.|++
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~~~i~~W~~ 239 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPDASLLPKDVIIQVWNY 239 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCCGHCSCTTEEEEEESS
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCccccccCCceEEEeec
Confidence 99999999999999999999999999754 5899999999999999999999999999999987788889999999974
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-57 Score=471.89 Aligned_cols=274 Identities=28% Similarity=0.480 Sum_probs=242.2
Q ss_pred CCCCeEEEEecCCCcccceeEEEEECChHhHHHHHHHHHhhcc-cCCCCceeEeeccceEEecCCCCcccceeecCCCCC
Q 014971 131 VDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCS-FDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209 (415)
Q Consensus 131 ~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~-~~~~~~~~~~~~~~~~I~D~P~f~~RG~~lD~aR~~ 209 (415)
..|+|+|.++..+ |+|+|.+..|++||++||.||+. .+...+.+.+|. ++|.|+|||.|||+|+|+||||
T Consensus 204 ~~e~y~la~~d~a-------i~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~--~~I~DaPRf~~rGllvDvaRqf 274 (732)
T COG3525 204 GEEAYRLAINDKA-------IKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPA--VTIVDAPRFAWRGLLVDVARQF 274 (732)
T ss_pred cchhheeecccce-------eEEeeccccchhhhHHHHHhhhccccccCCCeeeee--eecccCcccchhhhhHhhhhhc
Confidence 4799999999988 89999999999999999999998 444445556664 5799999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCC----------------CCCCCCHHHHHHHHHH
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYS----------------KWERYTVEDAHEIVSF 272 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~----------------~~~~YT~~ei~~lv~y 272 (415)
+|++.+|++||.|+.+|||.||||++||+|||+|+++||+|+ .|+++ .+++||+++++++++|
T Consensus 275 ~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~y 354 (732)
T COG3525 275 HSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAY 354 (732)
T ss_pred CCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 66643 3489999999999999
Q ss_pred HHHcCCEEEEeecCCcccchhhhcCCCCCCC-----------CCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCC
Q 014971 273 AKMRGINVMAEVDVPGHAESWGAGYPNLWPS-----------PSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGG 341 (415)
Q Consensus 273 A~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~-----------~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGg 341 (415)
|++|+|+||||||+|||+++.+.++|++..+ .+.+..+||+-+-+++|++++++|+.++||+.+|||||
T Consensus 355 Asar~ItviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGg 434 (732)
T COG3525 355 ASARQITVIPEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGG 434 (732)
T ss_pred HhhcCceecCCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEecc
Confidence 9999999999999999999999999965211 11233689999999999999999999999999999999
Q ss_pred CCCCCcCCCC-CHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccc-cccccceeecc
Q 014971 342 DEVNTDCWSS-TPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIAS-SIFKFALPLDF 413 (415)
Q Consensus 342 DEv~~~~w~~-~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~-~i~~~~~p~~~ 413 (415)
||+....|.. +|.|++.|++.|.+.. +++.+|++++.+++.++|++.++|+|.+..++... .+-+.|.-+-|
T Consensus 435 DE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~~~~~t~~~~vm~W 509 (732)
T COG3525 435 DEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVNGTALTANVTVMSW 509 (732)
T ss_pred chhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCccccccCceEEEEE
Confidence 9999999999 9999999999998754 89999999999999999999999999998874432 11155555555
No 8
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=7.1e-57 Score=450.31 Aligned_cols=195 Identities=34% Similarity=0.596 Sum_probs=175.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCC-----CCCCCCCHHHHHHH
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAY-----SKWERYTVEDAHEI 269 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~-----~~~~~YT~~ei~~l 269 (415)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+ .|++ +.+++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 7775 35689999999999
Q ss_pred HHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCC----------CCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEe
Q 014971 270 VSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPS----------CREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (415)
Q Consensus 270 v~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~----------~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~Hi 339 (415)
++||++|||+||||||+|||+.+|+++||+|...+. +..+|||++|++|+|+++|++|++++||++||||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999954321 1247999999999999999999999999999999
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccc
Q 014971 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFA 408 (415)
Q Consensus 340 GgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~ 408 (415)
||||+.... .++|.+|++++.++++++||++++|+|++..+...+.|.++|
T Consensus 161 GgDE~~~~~------------------~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~~l~~~~iv~~W 211 (329)
T cd06568 161 GGDEAHSTP------------------HDDYAYFVNRVRAIVAKYGKTPVGWQEIARADLPAGTVAQYW 211 (329)
T ss_pred ecccCCCCc------------------hHHHHHHHHHHHHHHHHCCCeEEEECcccccCCCCCeEEEEC
Confidence 999997531 367899999999999999999999999987654444554444
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.1e-55 Score=437.65 Aligned_cols=198 Identities=28% Similarity=0.554 Sum_probs=179.9
Q ss_pred ccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-cc----CCCCCCCCCHHHHHHHHHH
Q 014971 198 FRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KG----AYSKWERYTVEDAHEIVSF 272 (415)
Q Consensus 198 ~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g----~~~~~~~YT~~ei~~lv~y 272 (415)
|||+|||+||||+|+++||++||.||.+|||+||||++||||||+|+++||+|+ +| +++.+++||++|+++|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999998 66 5677889999999999999
Q ss_pred HHHcCCEEEEeecCCcccchhhhcCCCCCCC-------CCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCC
Q 014971 273 AKMRGINVMAEVDVPGHAESWGAGYPNLWPS-------PSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVN 345 (415)
Q Consensus 273 A~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~-------~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~ 345 (415)
|++|||+||||||+|||+++|+++||++... .....+|||++|++++|+++|++|++++||+++|||||||+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~ 160 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAH 160 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecC
Confidence 9999999999999999999999999998432 122457999999999999999999999999999999999997
Q ss_pred CcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccceeeccc
Q 014971 346 TDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFALPLDFH 414 (415)
Q Consensus 346 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~~p~~~~ 414 (415)
.. .+..+++.+|+++++++++++|+++++|+|++..+. .+.+..+++.|+
T Consensus 161 ~~----------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~---~l~~~~ii~~W~ 210 (303)
T cd02742 161 FK----------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKKM---KLKEDVIVQYWD 210 (303)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCC---CCCCCeEEEEcc
Confidence 64 123578999999999999999999999999998753 567777888776
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.5e-52 Score=419.04 Aligned_cols=201 Identities=25% Similarity=0.397 Sum_probs=180.2
Q ss_pred cccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccC---------------CCCCCC
Q 014971 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGA---------------YSKWER 260 (415)
Q Consensus 197 ~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~---------------~~~~~~ 260 (415)
.+||+|||+||||+|+++||++||.||++|||+||||++| +||++++.+|+++ .|+ ++.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 7999999999987 332 346789
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCC----CCCCcCCCCChhHHHHHHHHHHHHhhcCC--C
Q 014971 261 YTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSP----SCREPLDVSKNFTFEVISGILSDLRKIFP--F 334 (415)
Q Consensus 261 YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~----~~~~~ld~~~~~t~~fl~~l~~E~~~lFp--~ 334 (415)
||++|+++|++||++|||+||||||+|||+++|+++||++.... ....+|||++|++++|+++|++|++++|| +
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~ 158 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKS 158 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999985432 34568999999999999999999999999 9
Q ss_pred CeEEeCCCCCCCcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcccccccccceeeccc
Q 014971 335 ELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWFVLFCANEIASSIFKFALPLDFH 414 (415)
Q Consensus 335 ~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~~~~i~~~~~p~~~~ 414 (415)
+||||||||+... .+..+++.+|+++++++++++|+++++|+|++........+.+..+.+.|+
T Consensus 159 ~~~HiGgDE~~~~----------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~~~~l~~~~iv~~W~ 222 (326)
T cd06564 159 DTVHIGADEYAGD----------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGDTTVLSKDVIINYWS 222 (326)
T ss_pred CEEEecccccccc----------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCCcccCCCCeEEEeCC
Confidence 9999999999864 123578999999999999999999999999998765456678888888886
Q ss_pred C
Q 014971 415 S 415 (415)
Q Consensus 415 ~ 415 (415)
.
T Consensus 223 ~ 223 (326)
T cd06564 223 Y 223 (326)
T ss_pred C
Confidence 3
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=6.9e-48 Score=381.45 Aligned_cols=204 Identities=23% Similarity=0.306 Sum_probs=178.2
Q ss_pred ccceeecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014971 198 FRGLLIDTSR-HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (415)
Q Consensus 198 ~RG~~lD~aR-~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r 276 (415)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |++ +++|+++. .+++||++|+++|++||++|
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~~--~~~p~~~~----~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FPY--EGEPEVGR----MRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--eec--CCCccccc----CCCCcCHHHHHHHHHHHHHc
Confidence 5999999999 999999999999999999999999999994 655 57899862 36789999999999999999
Q ss_pred CCEEEEeecCCcccchhhhc--CCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHH
Q 014971 277 GINVMAEVDVPGHAESWGAG--YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPH 354 (415)
Q Consensus 277 gI~vIPEiD~PGH~~~~~~~--~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~ 354 (415)
||+||||||+|||+++|++. |.+++..+....+|||++|+|++|+++|++|++++||+++|||||||++..+ .++.
T Consensus 73 gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g--~~~~ 150 (301)
T cd06565 73 GIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG--RGRS 150 (301)
T ss_pred CCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC--CCHH
Confidence 99999999999999999873 3445544445678999999999999999999999999999999999998754 3455
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeEEEeccccCC----Ccccccccccceeeccc
Q 014971 355 VKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWFVLFCA----NEIASSIFKFALPLDFH 414 (415)
Q Consensus 355 ~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~----~~~~~~i~~~~~p~~~~ 414 (415)
++++ ...+..++|..|+++++++++++|+++++|+|++.. ....+.|.+.++++.|+
T Consensus 151 ~~~~---~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~l~~~v~~~~W~ 211 (301)
T cd06565 151 LRKH---GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEALSGLPKLVTPVVWD 211 (301)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHHHhCCCCCeEEEEec
Confidence 5443 344566999999999999999999999999999987 24567899999999997
No 12
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.73 E-value=2.7e-17 Score=143.28 Aligned_cols=122 Identities=47% Similarity=0.739 Sum_probs=79.8
Q ss_pred eeecccEEEEcCCeEEeCC-CeEEEECCCC--chHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCcccceeE
Q 014971 41 IWPLPAQFSSGNDTLSVDP-ALCLSVSGKG--SGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLK 117 (415)
Q Consensus 41 i~P~P~~~~~~~~~~~l~~-~~~i~~~~~~--~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (415)
|||+|++++.|++.+.|++ ++.+.+.+.. ...++|.+|++||.+.++.....+...+.+.... ......+..+.
T Consensus 1 lWP~P~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~l~ 77 (128)
T PF14845_consen 1 LWPKPQSISLGSTVFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSF---KPKSGYLSSLE 77 (128)
T ss_dssp -SS--SEEEEECEEEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S--------BE-ECEEEE
T ss_pred CCCCCcEEEECCceEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCccccc---ccCCCcceEEE
Confidence 7999999999999999988 7888875442 2469999999999999987653322111110000 00123455677
Q ss_pred EEEecCccc--ccCCCCCCeEEEE-ecCCCcccceeEEEEECChHhHHHHHHHHHhh
Q 014971 118 IVVHSDNEE--LQLGVDESYTLLV-AKNEGLSIIGEATIEANTVYGALRGLETFSQL 171 (415)
Q Consensus 118 i~~~~~~~~--~~~~~~E~Y~L~i-~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL 171 (415)
|.+...+.. +.+++||+|+|+| +.++ .|+|+|.+++||+||||||+||
T Consensus 78 I~v~~~~~~~~l~~~~DESY~L~v~s~~~------~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 78 ITVTSDDEDSELQLGMDESYSLSVPSTNG------QATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp EEESSSSTTSS--TT----EEEEETSSSE------EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccCCCCCCCEEEEEecCCc------eEEEEECChhhhhHHHHHHhhC
Confidence 888775544 7889999999999 5543 5999999999999999999997
No 13
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.64 E-value=3.6e-15 Score=128.58 Aligned_cols=123 Identities=23% Similarity=0.230 Sum_probs=77.4
Q ss_pred CceeecccEEEEcCCeEEeCCCeEEEECCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCcccceeEE
Q 014971 39 AYIWPLPAQFSSGNDTLSVDPALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLKI 118 (415)
Q Consensus 39 ~~i~P~P~~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (415)
+.|||.|++++..+|.|.|+..++|.+.... . .++.+++...+....|.++. . .+ ......|
T Consensus 2 ~~iiP~P~~~~~~~g~~~l~~~~~i~~~~~~--~---~~~~~~l~~~l~~~~g~~~~--------~---~~--~~~~~~i 63 (124)
T PF02838_consen 2 PSIIPQPQSITLTGGTFTLPQSTKIVVDDPE--L---KAAAERLQDILKRLTGISLS--------S---SG--SPNKIDI 63 (124)
T ss_dssp ---SS--SEEEEEEEEEEETTTEEEEETTCS--H---HHHHHHHHHHHHHHHTECCC--------E---CS--ETTSEEE
T ss_pred CcEEccccEEEECCCEEEECCCcEEEECCcc--c---HHHHHHHHHHHHHHhCCccc--------c---cC--CCCCceE
Confidence 6799999999999999999999999987631 1 22223333333333333210 0 00 1112344
Q ss_pred EEecCcccccCCCCCCeEEEEecCCCcccceeEEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecC
Q 014971 119 VVHSDNEELQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDK 193 (415)
Q Consensus 119 ~~~~~~~~~~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~ 193 (415)
.+...+. ....+|+|+|+|++++ |+|+|++..|+|||+|||+||+....+. .+|+ ++|+|+
T Consensus 64 ~~~~~~~--~~~~~E~Y~L~i~~~~-------I~I~a~~~~G~~yg~qTL~Qll~~~~~~---~lp~--~~I~D~ 124 (124)
T PF02838_consen 64 RLLLDDD--AGLGEEGYRLSISPKG-------ITIEASDPAGLFYGLQTLRQLLRQSGNG---TLPC--VEIEDY 124 (124)
T ss_dssp EEECTTC--CTSTTT-EEEEEESSE-------EEEEESSHHHHHHHHHHHHHHSBTCS-C---EEEE--EEEEE-
T ss_pred EEeecCC--CCCCCcceEEEEECCE-------EEEEEcCchHHHHHHHHHHHHhhccCCC---ccce--EEEEeC
Confidence 4433221 1235899999999987 9999999999999999999999986432 5774 589996
No 14
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=98.03 E-value=7.3e-05 Score=74.62 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=92.8
Q ss_pred cceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCH---HHHHHHHHHHHH
Q 014971 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTV---EDAHEIVSFAKM 275 (415)
Q Consensus 199 RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~---~ei~~lv~yA~~ 275 (415)
||+.-...+.+++.+..+++++.|+.+|||++..-..||.= +-.- .++.|+. +++++|++.|++
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpy-------hr~~------Wre~Yp~~el~~l~~L~~~a~~ 67 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPY-------HRSK------WREPYPEEELAELKELADAAKA 67 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TT-------TTTT------TTS---HHHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChH-------HHhh------hcccCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999831 1111 2344544 568889999999
Q ss_pred cCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHHH
Q 014971 276 RGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHV 355 (415)
Q Consensus 276 rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~ 355 (415)
.||+++--| .||. .++.+.++.++.|.+-++++.++ ..+.|=|=.|.+...-|...
T Consensus 68 ~~V~Fv~ai-sPg~-------------------~~~~s~~~d~~~L~~K~~ql~~l-Gvr~FailfDDi~~~~~~~~--- 123 (306)
T PF07555_consen 68 NGVDFVYAI-SPGL-------------------DICYSSEEDFEALKAKFDQLYDL-GVRSFAILFDDIDGDLWHCD--- 123 (306)
T ss_dssp TT-EEEEEE-BGTT-------------------T--TSHHHHHHHHHHHHHHHHCT-T--EEEEE-TS-SSC--TTT---
T ss_pred cCCEEEEEE-Cccc-------------------ccccCcHHHHHHHHHHHHHHHhc-CCCEEEEeecCCCCcccccc---
Confidence 999999999 7764 23355788889999999999886 45777777888775422211
Q ss_pred HHHHHHCC-CChHHHHHHHHHHHHHHHHhC
Q 014971 356 KKWLRDHK-LTAKEAYQYFVLTAQKIAISK 384 (415)
Q Consensus 356 ~~~~~~~g-~~~~~l~~~f~~~~~~~v~~~ 384 (415)
+.. ....+.+..+++++.+.+.+.
T Consensus 124 -----~~~~~~~~~~q~~l~n~v~~~l~~~ 148 (306)
T PF07555_consen 124 -----KDDFNSLAQAQARLLNRVNKELIKK 148 (306)
T ss_dssp -----TTT-SCHHHHHHHHHHHHHHHTTTC
T ss_pred -----ccccchHHHHHHHHHHHHHHHHhcc
Confidence 111 123578889999997777653
No 15
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.67 E-value=0.0032 Score=63.08 Aligned_cols=183 Identities=15% Similarity=0.144 Sum_probs=112.8
Q ss_pred ccceeecCCCC--CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCC-CCCCCCCCcc--ccCCCCCCCCCHHHHHHHHHH
Q 014971 198 FRGLLIDTSRH--YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFP-LEVPTYPNLW--KGAYSKWERYTVEDAHEIVSF 272 (415)
Q Consensus 198 ~RG~~lD~aR~--~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~-~e~~~~P~l~--~g~~~~~~~YT~~ei~~lv~y 272 (415)
.||+=|++..+ +...+.+.++|+.|...++|++-++..-. |-. +.++-.|... .|. ....-..+=++.+++.
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~-gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~e 78 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRPR-GDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIEE 78 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEeC-cEEEecccccccccccCCC--CCCCCCccHHHHHHHH
Confidence 58888887653 44688999999999999999888876532 222 3344444221 121 1111235679999999
Q ss_pred HHHcCCEEEEeec--CCccc-chhhhcCCCC-C-C-CC---------CCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeE
Q 014971 273 AKMRGINVMAEVD--VPGHA-ESWGAGYPNL-W-P-SP---------SCREPLDVSKNFTFEVISGILSDLRKIFPFELF 337 (415)
Q Consensus 273 A~~rgI~vIPEiD--~PGH~-~~~~~~~p~l-~-~-~~---------~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~ 337 (415)
|.+|||+|.+=+. +.++. ..+.+.+|+- . . .+ ...--|||++|++.+++.+++.|+.+-++-.=|
T Consensus 79 aHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGI 158 (311)
T PF02638_consen 79 AHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGI 158 (311)
T ss_pred HHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 9999999999872 22222 2234445543 1 0 00 011249999999999999999999988876666
Q ss_pred EeCCCCCCC--cCCCCC-HHHHHHHHHCCC---C-hH---------HHHHHHHHHHHHHHHhCC
Q 014971 338 HLGGDEVNT--DCWSST-PHVKKWLRDHKL---T-AK---------EAYQYFVLTAQKIAISKN 385 (415)
Q Consensus 338 HiGgDEv~~--~~w~~~-p~~~~~~~~~g~---~-~~---------~l~~~f~~~~~~~v~~~g 385 (415)
|+ |.+.+ ..++.+ +..++|.+..|. + .. +--..|++++.+.+++.+
T Consensus 159 hl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 159 HL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred Ee--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 63 43322 123333 334445554442 1 11 223467888888887754
No 16
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.81 E-value=0.042 Score=55.26 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCccc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~-~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~ 290 (415)
.+.+.++|+.+...++|.+.+-+.||.|.=.--...|... .|+. ..+ ..|+++|++.++++||.+|--|=++-
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~---~~~-i~D~~~l~~~l~e~gIY~IARIv~Fk-- 85 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV---KPY-IKDLKALVKKLKEHGIYPIARIVVFK-- 85 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc---ccc-ccCHHHHHHHHHHCCCEEEEEEEEec--
Confidence 4678999999999999999999999987522111223322 3432 122 47999999999999999998886654
Q ss_pred chhh-hcCCCCCC---------CCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHH--HHHH
Q 014971 291 ESWG-AGYPNLWP---------SPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPH--VKKW 358 (415)
Q Consensus 291 ~~~~-~~~p~l~~---------~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~--~~~~ 358 (415)
...+ ..+|++.. +.....=+||.++++.+.+-+|-+|.+.+ |-||+..+ +-..|. ..+.
T Consensus 86 D~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRFP~~~~~~~ 156 (316)
T PF13200_consen 86 DPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRFPDEGRLSG 156 (316)
T ss_pred ChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeecCCCCcccc
Confidence 2222 34677632 11112249999999999999999999875 33333221 111111 0000
Q ss_pred H--HHC--CCChHHHHHHHHHHHHHHHHhCCCeE
Q 014971 359 L--RDH--KLTAKEAYQYFVLTAQKIAISKNWTP 388 (415)
Q Consensus 359 ~--~~~--g~~~~~l~~~f~~~~~~~v~~~g~~~ 388 (415)
+ ... ..+..+....|++.+.+.++..|..+
T Consensus 157 l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 157 LDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 0 000 11134678899999999999988654
No 17
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.9 Score=47.38 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=88.4
Q ss_pred Ccccceeec--CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc--ccCCCCCCCCCHHHHHHHHH
Q 014971 196 FAFRGLLID--TSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW--KGAYSKWERYTVEDAHEIVS 271 (415)
Q Consensus 196 f~~RG~~lD--~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~--~g~~~~~~~YT~~ei~~lv~ 271 (415)
=+.||+=+| ..+....-..+++.+|.+...++|++-.-..-+--==+.+...|.-. .|...... -.+=+..+++
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~I~ 122 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFVIA 122 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCC--CCChHHHHHH
Confidence 467999998 55778889999999999999999999887654321112222223211 01000011 2345899999
Q ss_pred HHHHcCCEEEEeecCCcccch---hhhcCCCCCCC----------CC--CCCcCCCCChhHHHHHHHHHHHHhhcCC
Q 014971 272 FAKMRGINVMAEVDVPGHAES---WGAGYPNLWPS----------PS--CREPLDVSKNFTFEVISGILSDLRKIFP 333 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~~~---~~~~~p~l~~~----------~~--~~~~ld~~~~~t~~fl~~l~~E~~~lFp 333 (415)
-|++||++|+|=++.-.-+-. +.+.+|+--.. .. ..--|||..|++-+|+.+++-|+..=++
T Consensus 123 ~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 123 EAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred HHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 999999999998865332211 22334432110 00 1224999999999999999999987664
No 18
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.48 E-value=0.035 Score=54.70 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
++-...+..|++||..|.+++-.+.+ |.||.-. ..+ ..+.....+...+|++|++||+++||.|+-=...
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~--~~~----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW--EKD----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS----T----TT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc--ccc----ccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 34578999999999999999998888 7788531 000 0112234567789999999999999888766544
Q ss_pred Cc---------ccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 287 PG---------HAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 287 PG---------H~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
-+ +.+.+++.|.++...+..-.-++-.+.+..++..+++++.++
T Consensus 96 ~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 96 ETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp CHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHH
T ss_pred CcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHH
Confidence 33 112222222222111100112455788999999999999976
No 19
>smart00642 Aamy Alpha-amylase domain.
Probab=95.16 E-value=0.16 Score=46.36 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC------CCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDE------QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~------~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
+.+.+.+-++.++..++|.+++-.--. ..|.+....|-.+. ..+=|.+|++++++-|+++||+||-.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~------~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID------PRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC------cccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467788888999999999999854211 11222222222221 011278999999999999999999999
Q ss_pred cCCcccch
Q 014971 285 DVPGHAES 292 (415)
Q Consensus 285 D~PGH~~~ 292 (415)
+|.|+..
T Consensus 91 -V~NH~~~ 97 (166)
T smart00642 91 -VINHTSD 97 (166)
T ss_pred -CCCCCCC
Confidence 8999875
No 20
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.00 E-value=0.13 Score=52.54 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCC-CCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFP-LEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~-~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
+|.+.+++-++.|...++|++.++.- +|. +| | ..+.|.-+.+..+++.|+++||.||--+-+..
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P--------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~ 71 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----P--------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAA 71 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----S--------BTTB---HHHHHHHHHHHCTT-EEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----C--------CCCeeecHHHHHHHHHHHhccCeEEEEecccc
Confidence 46689999999999999999997531 231 22 2 24567888899999999999999997654333
Q ss_pred ccchhhhcCCCCCCCC--------CCCCcCCCCChhHHHHHHHHHHHHhhcCCC-C---eEEeCCCCCCC-cCCCCCHHH
Q 014971 289 HAESWGAGYPNLWPSP--------SCREPLDVSKNFTFEVISGILSDLRKIFPF-E---LFHLGGDEVNT-DCWSSTPHV 355 (415)
Q Consensus 289 H~~~~~~~~p~l~~~~--------~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~-~---~~HiGgDEv~~-~~w~~~p~~ 355 (415)
.=..+.+.||+....+ ......|+.+|...+.+.++++++.+-+.. + -+||+ -|... .|+ ||.|
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~~~~~--~~~~ 148 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGYHRCY--SPAC 148 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTCTS----SHHH
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCcCcCC--ChHH
Confidence 2234456789874311 122357899999999999999999887753 2 45552 35443 343 4544
Q ss_pred H
Q 014971 356 K 356 (415)
Q Consensus 356 ~ 356 (415)
+
T Consensus 149 ~ 149 (374)
T PF02449_consen 149 Q 149 (374)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.96 E-value=0.24 Score=43.60 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhh
Q 014971 216 KQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGA 295 (415)
Q Consensus 216 k~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~ 295 (415)
+++++.|...+.|.+.+...+-.||-+ ||.=. |. ....++++=++|+|+-|+++||+|+--+|.--+ +.+..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~-~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d-~~~~~ 74 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV-GP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWD-EDAAE 74 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC-Cc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecC-hHHHH
Confidence 578999999999999997776666644 33211 21 123356667899999999999999999977733 33445
Q ss_pred cCCCCCC---CCC---------C-CCcCCCCChhHHHHHHHHHHHHhhcCCC
Q 014971 296 GYPNLWP---SPS---------C-REPLDVSKNFTFEVISGILSDLRKIFPF 334 (415)
Q Consensus 296 ~~p~l~~---~~~---------~-~~~ld~~~~~t~~fl~~l~~E~~~lFp~ 334 (415)
.|||.+. ++. . -..+|+.. .-.+++...++|+.+.++.
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDV 125 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCC
Confidence 7898732 111 0 11355554 4559999999999987764
No 22
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.52 E-value=0.52 Score=51.85 Aligned_cols=117 Identities=17% Similarity=0.098 Sum_probs=75.2
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeec----CCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 209 YLPVDVIK-QIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 209 ~~~~~~lk-~~id~ma~~K~N~lh~hltD----~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+-+...+. ++||.+..+++|.+++-.-- ..+|.+....|=.+. ..+=|.+|+|+||+.|.++||+||-.
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~------~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT------SRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC------CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45555554 56799999999999885531 124544433332221 11228999999999999999999999
Q ss_pred ecCCcccch--h-hhcC---CCCC-CC---CC----CCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 284 VDVPGHAES--W-GAGY---PNLW-PS---PS----CREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 284 iD~PGH~~~--~-~~~~---p~l~-~~---~~----~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
+ .|.|+.. . +..+ +.+. .. .. ....+|..+|++.+++.+.+.-.++-|
T Consensus 240 ~-V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 240 W-VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred E-CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 9 7899852 1 1110 1000 00 00 112478899999999998888777654
No 23
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.20 E-value=0.59 Score=50.47 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC----CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~----~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
..-|.+-||.++..++|.+++-..-+ ..|.+....|= .....| |.+|++++|+-|.++||+||-.+ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~-------~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPY-------APHNAYGGPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcc-------ccccccCCHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 55666778999999999999865421 23444322221 112222 78999999999999999999998 7
Q ss_pred Ccccc
Q 014971 287 PGHAE 291 (415)
Q Consensus 287 PGH~~ 291 (415)
+.|+.
T Consensus 182 ~NH~~ 186 (542)
T TIGR02402 182 YNHFG 186 (542)
T ss_pred cCCCC
Confidence 88975
No 24
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.13 Score=54.73 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=60.9
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHH---HHHHHHHHHHc
Q 014971 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVED---AHEIVSFAKMR 276 (415)
Q Consensus 200 G~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~e---i~~lv~yA~~r 276 (415)
|+.-.+.++++.++.-|++.+.+...+||+..+...||- ++-.+| ++-|+.+| ++.|++-|++.
T Consensus 20 GVvEGFYGRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDy-------KHR~~W------RElY~vEEa~~L~~Li~aAke~ 86 (891)
T KOG3698|consen 20 GVVEGFYGRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDY-------KHRSLW------RELYNVEEATYLRNLIEAAKEN 86 (891)
T ss_pred EeeccccCCCCCHHHHHHHHHHHHhcccceeeecccchh-------HHHHHH------HHHhhhHHHHHHHHHHHHHHhc
Confidence 555566788999999999999999999999999998882 222233 44577766 67889999999
Q ss_pred CCEEEEeecCCc
Q 014971 277 GINVMAEVDVPG 288 (415)
Q Consensus 277 gI~vIPEiD~PG 288 (415)
||+.|-.| +||
T Consensus 87 ~i~F~YAi-SPG 97 (891)
T KOG3698|consen 87 NINFVYAI-SPG 97 (891)
T ss_pred CceEEEEc-CCC
Confidence 99999998 777
No 25
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=93.74 E-value=0.64 Score=50.96 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=72.7
Q ss_pred HHHH-HHHHHHHHhCCCcEEEEEeec----CCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeec
Q 014971 212 VDVI-KQIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVD 285 (415)
Q Consensus 212 ~~~l-k~~id~ma~~K~N~lh~hltD----~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD 285 (415)
...| .++||.+..+++|.+++-.-- +.+|.+....| |.....| |.+|+++||+.|.++||+||-.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~- 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW- 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 4444 445699999999999884321 12354443332 1222222 78999999999999999999998
Q ss_pred CCcccch---hhhc---CCCCC---CC-C----CCCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 286 VPGHAES---WGAG---YPNLW---PS-P----SCREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 286 ~PGH~~~---~~~~---~p~l~---~~-~----~~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
.+.|+.. .+.. .|.+. +. . .....+|..+|++.+++.+.+.-.++-|
T Consensus 227 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 227 VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred cccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 7899863 1111 11110 00 0 0112478899999999999888887654
No 26
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.56 E-value=0.54 Score=45.04 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=92.4
Q ss_pred cccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014971 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (415)
Q Consensus 197 ~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r 276 (415)
.+||+-.. +.......+.++.|+..++|.+-+.+. |..-.+.-|... -..-..+.+++++++|+++
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~------~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN------YDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS------BTHHHHHHHHHHHHHHHHT
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc------ccHHHHHHHHHHHHHHHhC
Confidence 45666654 433337889999999999999999885 311111111110 0012457899999999999
Q ss_pred CCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCC---CCCCcCCCCCH
Q 014971 277 GINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGD---EVNTDCWSSTP 353 (415)
Q Consensus 277 gI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgD---Ev~~~~w~~~p 353 (415)
||.||..+-.. |..+. ........+...+.+.++++.++..|...--++|=| |....+..
T Consensus 75 gi~vild~h~~----------~~w~~----~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~--- 137 (281)
T PF00150_consen 75 GIYVILDLHNA----------PGWAN----GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD--- 137 (281)
T ss_dssp T-EEEEEEEES----------TTCSS----STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST---
T ss_pred CCeEEEEeccC----------ccccc----cccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc---
Confidence 99999877332 11110 112223455566778888888888774321233432 33322110
Q ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCC-eEEEecc
Q 014971 354 HVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNW-TPVNWFV 393 (415)
Q Consensus 354 ~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~-~~~~W~d 393 (415)
..| +....+.+..|.+++.+.+++.+. ++++-+.
T Consensus 138 --~~w----~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 138 --ANW----NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp --TTT----SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred --ccc----ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 000 000236688899999999999876 4444433
No 27
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.49 E-value=3.8 Score=46.06 Aligned_cols=167 Identities=15% Similarity=0.129 Sum_probs=97.2
Q ss_pred CCHHHH-HHHHHHHHhCCCcEEEEEeecC----CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Q 014971 210 LPVDVI-KQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 210 ~~~~~l-k~~id~ma~~K~N~lh~hltD~----~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPE 283 (415)
-+...+ .+.|+.+...++|.+++-.--+ .+|-+....|=. ...+| |.+|+|++|+-|.++||.||-.
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa-------~~~~~Gtp~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFA-------VSSRSGTPEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcc-------cccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344443 5789999999999988864322 234444333222 22223 7899999999999999999999
Q ss_pred ecCCcccchh----hhcC----CCCCC-C--C----CCCCcCCCCChhHHHHHHHHHHHHhhcCC-----------CCeE
Q 014971 284 VDVPGHAESW----GAGY----PNLWP-S--P----SCREPLDVSKNFTFEVISGILSDLRKIFP-----------FELF 337 (415)
Q Consensus 284 iD~PGH~~~~----~~~~----p~l~~-~--~----~~~~~ld~~~~~t~~fl~~l~~E~~~lFp-----------~~~~ 337 (415)
+ .+.|+..- +..+ +.+.. . + .....+|..++++.+|+.+.++-.++-|. .-|.
T Consensus 320 v-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~ 398 (758)
T PLN02447 320 V-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYH 398 (758)
T ss_pred e-ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhcc
Confidence 9 89998531 1111 11110 0 0 01125888999999999998888776431 1255
Q ss_pred EeCCCCCCCcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeEEEecc
Q 014971 338 HLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWFV 393 (415)
Q Consensus 338 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d 393 (415)
|-|...-+...|+. +. .|-...+ =..|++.+.+.+.+.....+.=.|
T Consensus 399 ~hg~~~~f~~~~~~------~~--g~~~d~~-a~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 399 HHGLQMAFTGNYNE------YF--GMATDVD-AVVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred ccCcccccccCccc------cc--CCccChH-HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 65544322222221 00 0111112 246777777777776554444333
No 28
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.35 E-value=2.7 Score=46.02 Aligned_cols=133 Identities=11% Similarity=0.163 Sum_probs=78.2
Q ss_pred ccceeecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecC------------CCCCCCCCCCCCccccCCCCC---CCC
Q 014971 198 FRGLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDE------------QSFPLEVPTYPNLWKGAYSKW---ERY 261 (415)
Q Consensus 198 ~RG~~lD~aR~-~~~~~~lk~~id~ma~~K~N~lh~hltD~------------~~~~~e~~~~P~l~~g~~~~~---~~Y 261 (415)
.||-...+..+ -....-+.+.||.+..+++|.+++-..-+ -.|.|....|=.. .+.|..+ +.-
T Consensus 148 ~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~-~~~y~~~p~~~~~ 226 (605)
T TIGR02104 148 NKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP-EGSYSTNPYDPAT 226 (605)
T ss_pred CCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc-ChhhhcCCCccch
Confidence 35555544432 12234566789999999999998854321 1244432222111 0111110 111
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCcccch-----hhhcCCCCC----C------CCCCCCcCCCCChhHHHHHHHHHH
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAES-----WGAGYPNLW----P------SPSCREPLDVSKNFTFEVISGILS 326 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~-----~~~~~p~l~----~------~~~~~~~ld~~~~~t~~fl~~l~~ 326 (415)
+.+|+|++|+-|.++||+||-.+ .+.|+.. +....|... . ...|...++..+|++.+++.+.++
T Consensus 227 ~~~efk~lV~~~H~~Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~ 305 (605)
T TIGR02104 227 RIRELKQMIQALHENGIRVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVL 305 (605)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHH
Confidence 25899999999999999999999 8889852 211122221 0 112334567778899998888887
Q ss_pred HHhhcC
Q 014971 327 DLRKIF 332 (415)
Q Consensus 327 E~~~lF 332 (415)
-.+.-|
T Consensus 306 ~W~~e~ 311 (605)
T TIGR02104 306 YWVKEY 311 (605)
T ss_pred HHHHHc
Confidence 776544
No 29
>PRK05402 glycogen branching enzyme; Provisional
Probab=93.24 E-value=1.1 Score=50.15 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeec----CCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 209 YLPVDVIK-QIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 209 ~~~~~~lk-~~id~ma~~K~N~lh~hltD----~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+-+...|. ++||.+..+++|.+++-.-- +.+|.+....|=.+. ..+=|.+|+++||+.|.++||+||-.
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~------~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT------SRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44555555 55799999999999886541 224555443332221 12238999999999999999999999
Q ss_pred ecCCcccch--h-hhcC---CCCCC-C---C---C-CCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 284 VDVPGHAES--W-GAGY---PNLWP-S---P---S-CREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 284 iD~PGH~~~--~-~~~~---p~l~~-~---~---~-~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
+ .|.|+.. + +..+ +.+.. . + . ....+|..+|++.+++.+.+.-.++-|
T Consensus 335 ~-V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 335 W-VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred E-CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 8 7899843 1 1111 10100 0 0 0 011478899999999998887777644
No 30
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.15 E-value=0.98 Score=53.09 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeec----CCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 215 IKQIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 215 lk~~id~ma~~K~N~lh~hltD----~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
..++||.+...++|.+++-..- +.+|-|+...|= .....| |.+|+|++|+.|.++||.||-.+ .|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~-------ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYF-------APTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccC-------CcCcccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 3567899999999988886542 234555443332 222222 89999999999999999999998 8999
Q ss_pred cch--h-hhcC---CCCC-------CCCCC-CCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 290 AES--W-GAGY---PNLW-------PSPSC-REPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 290 ~~~--~-~~~~---p~l~-------~~~~~-~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
... | +..+ +-+. ....+ ...+|..++++.+|+-+...-..+-|
T Consensus 840 ~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey 896 (1224)
T PRK14705 840 FPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF 896 (1224)
T ss_pred CCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 842 2 1111 1110 00011 12478999999999998887777654
No 31
>PRK12568 glycogen branching enzyme; Provisional
Probab=93.08 E-value=1 Score=50.26 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeecC----CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 014971 209 YLPVDVIK-QIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 209 ~~~~~~lk-~~id~ma~~K~N~lh~hltD~----~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIP 282 (415)
+.+...+. ++|+.+..+++|.+++-..-. .+|.++... -|.....| |.+|++++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~-------~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLG-------LYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCc-------CCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44545554 568999999999888865421 234443222 22222222 799999999999999999999
Q ss_pred eecCCcccchhh---hcCC--CCCC--CCC-------CCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 283 EVDVPGHAESWG---AGYP--NLWP--SPS-------CREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 283 EiD~PGH~~~~~---~~~p--~l~~--~~~-------~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
.+ .|.|+..-. ..+. .+.. ++. ....+|..+|++.+|+-+...-..+-|
T Consensus 338 D~-V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 338 DW-VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred Ee-ccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 99 899986421 1111 1111 000 011368999999999988887776554
No 32
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=93.08 E-value=0.18 Score=48.72 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC---CCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~---~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
..-|.+-||.++..++|.+++-.-=. ..|.+....|=.+ ...+=|.+|+++||+-|.+|||+||-.+ ++.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~v------d~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAV------DPRFGTMEDFKELVDAAHKRGIKVILDV-VPN 75 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEE------STTTBHHHHHHHHHHHHHHTTCEEEEEE-ETS
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecc------ccccchhhhhhhhhhccccccceEEEee-ecc
Confidence 45677789999999999999843211 1222222221111 0111289999999999999999999888 778
Q ss_pred ccch
Q 014971 289 HAES 292 (415)
Q Consensus 289 H~~~ 292 (415)
|+..
T Consensus 76 H~~~ 79 (316)
T PF00128_consen 76 HTSD 79 (316)
T ss_dssp EEET
T ss_pred cccc
Confidence 8754
No 33
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.24 E-value=6.8 Score=41.08 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=112.3
Q ss_pred ccCCCCCCeEEEEecCCCcccceeEEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcccce-----
Q 014971 127 LQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGL----- 201 (415)
Q Consensus 127 ~~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~----- 201 (415)
+.++ .|||.|..-.-+. .....|.|++..|++||+=-|+.||+....- . -+.|..-|+-..|-+
T Consensus 89 ~~Lg-EEGy~irt~~~~g---~~~lvi~g~t~~gvlYG~F~ll~liq~g~~v-----~--kl~iv~~Pk~klRMlNhWDN 157 (684)
T COG3661 89 LKLG-EEGYLIRTVTVGG---KATLVIAGNTDIGVLYGVFRLLSLIQTGQSV-----D--KLDIVSVPKVKLRMLNHWDN 157 (684)
T ss_pred cccc-CcceEEEEEEeCC---eEEEEEEeccceeEEeeHHHHHHHHHhccch-----h--hcchhcCcHHHHhhhhhhhc
Confidence 3455 8999886544331 2346899999999999999999988864321 1 124566666665544
Q ss_pred -------------eecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCC---HH
Q 014971 202 -------------LIDTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYT---VE 264 (415)
Q Consensus 202 -------------~lD~aR~~-~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT---~~ 264 (415)
+++--+.. .-.+.+|+.-+.+|..++|-..+.-.. .++- + ..-.| .+
T Consensus 158 lDg~iERGYaG~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVN-------vk~~-e--------~~lit~~fl~ 221 (684)
T COG3661 158 LDGHIERGYAGQSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVN-------VKKA-E--------SYLITAPFLA 221 (684)
T ss_pred cccceecccCCCceeeeccccccchHHHHHHHHHHhhcCcceEEecccc-------cchh-h--------hheechHhHH
Confidence 11111111 123678889999999999988774221 1100 0 00012 34
Q ss_pred HHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCC-CeEEeCCC
Q 014971 265 DAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF-ELFHLGGD 342 (415)
Q Consensus 265 ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~-~~~HiGgD 342 (415)
+++.+.+.-+.+||.|.-.|+.-.-+ +|. ...+-||.++.+..+-++-.+|+-+..|+ -=|-+-+|
T Consensus 222 k~aklAdiFR~YGIK~yLsinfaSP~--------~lG----gL~TADPLDe~VrawWkeka~~IY~yIPDFGGFLVKAd 288 (684)
T COG3661 222 KAAKLADIFRPYGIKVYLSINFASPM--------ELG----GLKTADPLDEAVRAWWKEKADEIYKYIPDFGGFLVKAD 288 (684)
T ss_pred HHHHHHHHhhhccceEEEEeccCCcc--------ccC----CcCcCCcccHHHHHHHHHHHHHHHHhcccccceEEecc
Confidence 56677777789999999998764322 121 23466888999999999999999887775 33344444
No 34
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.01 E-value=1.4 Score=48.54 Aligned_cols=116 Identities=24% Similarity=0.259 Sum_probs=74.3
Q ss_pred CCCHHHH-HHHHHHHHhCCCcEEEEEeecC----CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 014971 209 YLPVDVI-KQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 209 ~~~~~~l-k~~id~ma~~K~N~lh~hltD~----~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIP 282 (415)
|.+...+ .++++.+...++|.+++-..-. .+|.+....| |.....| |.+|++.+|+-|.++||.||.
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~-------~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY-------YAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc-------cccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 5554444 4567899999999888754321 2344432222 2333334 899999999999999999999
Q ss_pred eecCCcccchh---hh---cCCCCC-CCC-------CCCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 283 EVDVPGHAESW---GA---GYPNLW-PSP-------SCREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 283 EiD~PGH~~~~---~~---~~p~l~-~~~-------~~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
.+ .|.|+..- +. +.|... ..+ .....+|..++++.+|+.+...-..+-|
T Consensus 236 D~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 236 DW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred Ee-cccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 99 88997531 11 111110 000 0112478899999999998887776544
No 35
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=91.40 E-value=0.86 Score=49.22 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC---CCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~---~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
.+.-+.+-+|.++..++|.+++-.--. ....+....|=.+. ..+=|.+|+++||+.|+++||+||-.+ +|
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id------~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~ 97 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN------PLFGTMADFEELVSEAKKRNIKIMLDM-VF 97 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC------cccCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence 567788888999999999998854211 11122222211111 112288999999999999999999999 88
Q ss_pred cccc
Q 014971 288 GHAE 291 (415)
Q Consensus 288 GH~~ 291 (415)
-|+.
T Consensus 98 NH~~ 101 (543)
T TIGR02403 98 NHTS 101 (543)
T ss_pred cccc
Confidence 8985
No 36
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=91.14 E-value=2.2 Score=47.52 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=69.6
Q ss_pred HHHHHHhCCCcEEEEEeecC----C---------CCCCCCCCCCCccccCCCCCCCC----CHHHHHHHHHHHHHcCCEE
Q 014971 218 IIESMSYAKLNVLHWHIIDE----Q---------SFPLEVPTYPNLWKGAYSKWERY----TVEDAHEIVSFAKMRGINV 280 (415)
Q Consensus 218 ~id~ma~~K~N~lh~hltD~----~---------~~~~e~~~~P~l~~g~~~~~~~Y----T~~ei~~lv~yA~~rgI~v 280 (415)
.||.+..+++|.+++-..=+ + .|.|.... -|.....| +.+|+|++|+-|.++||+|
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~-------y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG-------FFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc-------ccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 58899999999988854311 0 12221111 12233445 6899999999999999999
Q ss_pred EEeecCCcccchhhhcCC----------CC-----------CCCCCCCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 281 MAEVDVPGHAESWGAGYP----------NL-----------WPSPSCREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 281 IPEiD~PGH~~~~~~~~p----------~l-----------~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
|-.+ .+.|+..-....| .+ .....|...+|..+|.+.+++.+.+.-...-|
T Consensus 262 IlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~ 333 (688)
T TIGR02100 262 ILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEM 333 (688)
T ss_pred EEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 9999 8889864211001 00 00112445689999999999998888776544
No 37
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.74 E-value=2.4 Score=46.95 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=70.1
Q ss_pred HHHHHHhCCCcEEEEEeecCC-------------CCCCCCCCCCCccccCCCCCCCCC------HHHHHHHHHHHHHcCC
Q 014971 218 IIESMSYAKLNVLHWHIIDEQ-------------SFPLEVPTYPNLWKGAYSKWERYT------VEDAHEIVSFAKMRGI 278 (415)
Q Consensus 218 ~id~ma~~K~N~lh~hltD~~-------------~~~~e~~~~P~l~~g~~~~~~~YT------~~ei~~lv~yA~~rgI 278 (415)
.||.+..+++|.+++-..-+. .|.|.... -|.....|. .+|+|++|+-|.++||
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~-------yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI 256 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLA-------MFALDPAYASGPETALDEFRDAVKALHKAGI 256 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccc-------ccccccccCCCCcchHHHHHHHHHHHHHCCC
Confidence 488999999999988543210 11111111 122333443 4799999999999999
Q ss_pred EEEEeecCCcccchhhhcCCC----------C-C--------CCCCCCCcCCCCChhHHHHHHHHHHHHhhcCC
Q 014971 279 NVMAEVDVPGHAESWGAGYPN----------L-W--------PSPSCREPLDVSKNFTFEVISGILSDLRKIFP 333 (415)
Q Consensus 279 ~vIPEiD~PGH~~~~~~~~p~----------l-~--------~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp 333 (415)
+||-.+ .+.|+.......|. + + .-..|...+|..+|.+.+++.+.++-..+-|.
T Consensus 257 ~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 257 EVILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999 88898642111111 1 0 01124457889999999999999888876553
No 38
>PLN02361 alpha-amylase
Probab=89.92 E-value=5.5 Score=41.54 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeecCCccc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD~PGH~ 290 (415)
-..|.+-++.++..+++.+.+-..-. +... .+|.- ..-|.-+..| |++|++++|+-|+++||+||-.+ .+-|+
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~~-~~~~--~GY~~--~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH~ 101 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPSQ-SLAP--EGYLP--QNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VINHR 101 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCc-CCCC--CCCCc--ccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-ccccc
Confidence 36788889999999999998854211 1000 01110 0111222222 89999999999999999999998 78887
Q ss_pred chhhhc-------CCC--C-------CC--CC----CC------CCcCCCCChhHHHHHHHHHHHHh
Q 014971 291 ESWGAG-------YPN--L-------WP--SP----SC------REPLDVSKNFTFEVISGILSDLR 329 (415)
Q Consensus 291 ~~~~~~-------~p~--l-------~~--~~----~~------~~~ld~~~~~t~~fl~~l~~E~~ 329 (415)
.+.... |.. + +. .+ .. .--||-.||++.+.+.+.++-+.
T Consensus 102 ~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~ 168 (401)
T PLN02361 102 VGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLR 168 (401)
T ss_pred cCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHH
Confidence 432111 110 0 00 00 00 11388889999888888777553
No 39
>PLN02960 alpha-amylase
Probab=89.78 E-value=1.3 Score=50.27 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEee----cCCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 014971 209 YLPVDVIK-QIIESMSYAKLNVLHWHII----DEQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 209 ~~~~~~lk-~~id~ma~~K~N~lh~hlt----D~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIP 282 (415)
+-+...+. +.|+.+...++|.+.+-.. +..+|.+....| |.....| |.+|++.+|+-|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~y-------fa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNF-------FAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------CCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44555664 6799999999999888654 223454443322 2222222 789999999999999999999
Q ss_pred eecCCcccchh----hh---cCCCCCC----CC----CCCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 283 EVDVPGHAESW----GA---GYPNLWP----SP----SCREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 283 EiD~PGH~~~~----~~---~~p~l~~----~~----~~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
.+ .|.|+..= +. +-+.+.. .. -....+|..++++.+|+-+.+.-..+-|
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 88997531 11 1111110 00 0112478999999999988777766433
No 40
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=89.76 E-value=2.2 Score=44.40 Aligned_cols=121 Identities=9% Similarity=0.132 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCC-CCCCCccccCCCC-CCCCCHHHHHHHHHHHHHcCCEE----EEe
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEV-PTYPNLWKGAYSK-WERYTVEDAHEIVSFAKMRGINV----MAE 283 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~-~~~P~l~~g~~~~-~~~YT~~ei~~lv~yA~~rgI~v----IPE 283 (415)
++-+.++++++.++.++++.|.+ |.||--.- ..... .|-|.. ...+. .-++.|+++.+++|++. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~~d~~~--~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI----DDGWFGGRDDDNAG--LGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCTESTTTST--TSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE----cCccccccCCCccc--CCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccc
Confidence 56899999999999999999888 45663210 01001 122211 12232 24999999999999873 344
Q ss_pred ecCCcccchhhhcCCCCCCC------CCCC--CcCCCCChhHHHHHHHHHHHHhhcCCCCeEEe
Q 014971 284 VDVPGHAESWGAGYPNLWPS------PSCR--EPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (415)
Q Consensus 284 iD~PGH~~~~~~~~p~l~~~------~~~~--~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~Hi 339 (415)
+=.|+ ..+.+.||+.... .... ..||+++|++.+++.+.++.+..-.+-.||=+
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred cccch--hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 32232 3344567765211 0111 25999999999999999988866555555544
No 41
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=89.65 E-value=2 Score=36.88 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCCCeEEEEecCCCcccceeEEEEECChHhHHHHHHH
Q 014971 131 VDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLET 167 (415)
Q Consensus 131 ~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~T 167 (415)
.+|||.|+.-..+. ...+.|.|.+..|++||.=.
T Consensus 88 ~~EGy~I~~v~~~~---~~~lvI~g~~~~G~LYGvF~ 121 (122)
T PF03648_consen 88 GEEGYIIRTVEIGG---KNVLVIAGKTERGVLYGVFH 121 (122)
T ss_dssp STT-EEEEEEESSS---SEEEEEEESSHHHHHHHHHH
T ss_pred CCccEEEEEEecCC---CCEEEEEeCCCcEEEEEEee
Confidence 48999999932221 23699999999999999743
No 42
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=89.00 E-value=2 Score=48.51 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEee----cCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 209 YLPVDVIKQIIESMSYAKLNVLHWHII----DEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 209 ~~~~~~lk~~id~ma~~K~N~lh~hlt----D~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
=++.+.+.+.|+.++..++|.+++-.- +...+.|....|-.+. ...=|.+|++++++-|+++||.||-.+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id------p~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN------PELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356788999999999999998877542 1122334333333322 111179999999999999999999999
Q ss_pred cCCcccch
Q 014971 285 DVPGHAES 292 (415)
Q Consensus 285 D~PGH~~~ 292 (415)
+|-|+..
T Consensus 86 -VpNH~a~ 92 (825)
T TIGR02401 86 -VPNHMAV 92 (825)
T ss_pred -ccccccc
Confidence 8999863
No 43
>PRK10785 maltodextrin glucosidase; Provisional
Probab=88.98 E-value=1.8 Score=47.30 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=55.6
Q ss_pred CCCCC--HHHHHHHHHHHHhCCCcEEEEEeecC--CCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 207 RHYLP--VDVIKQIIESMSYAKLNVLHWHIIDE--QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 207 R~~~~--~~~lk~~id~ma~~K~N~lh~hltD~--~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+.|+. ++-|.+-||.++.+++|.+++-.--. ..+++....|=++. ..+=|.+|+++||+-|.+|||+||-
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iD------p~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVD------PQLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccC------cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34554 88899999999999999999854211 12223222222221 1112889999999999999999999
Q ss_pred eecCCcccch
Q 014971 283 EVDVPGHAES 292 (415)
Q Consensus 283 EiD~PGH~~~ 292 (415)
.+ ++.|+..
T Consensus 245 D~-V~NH~~~ 253 (598)
T PRK10785 245 DG-VFNHTGD 253 (598)
T ss_pred EE-CCCcCCC
Confidence 99 8889864
No 44
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=88.68 E-value=2 Score=48.92 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEee----cCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHII----DEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVD 285 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hlt----D~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD 285 (415)
++.+.+.+.++.++..++|.+.+-.- ....+.|....|-.+. ...=|.+|++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id------p~lGt~e~f~~Lv~aah~~Gi~VIlDi- 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN------PELGGEEGLRRLAAALRAHGMGLILDI- 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 57788999999999999998887542 1123334433333332 111178999999999999999999999
Q ss_pred CCcccch
Q 014971 286 VPGHAES 292 (415)
Q Consensus 286 ~PGH~~~ 292 (415)
+|-|+..
T Consensus 90 V~NH~~~ 96 (879)
T PRK14511 90 VPNHMAV 96 (879)
T ss_pred ccccccC
Confidence 8999863
No 45
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=88.42 E-value=1.8 Score=46.59 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC---CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~---~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
.+.-|.+-||.++.+++|.+++-.--. ..+.+....|=.+ +..| |.+|+++||+-|.++||+||-.+ +
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~v-------d~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V 97 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAI-------LPEFGTIDDFKDFVDEAHARGMRVIIDL-V 97 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCccccccc-------ChhhCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 467788889999999999998854311 0122222222111 1112 78999999999999999999999 8
Q ss_pred Ccccch
Q 014971 287 PGHAES 292 (415)
Q Consensus 287 PGH~~~ 292 (415)
+.|+..
T Consensus 98 ~NH~s~ 103 (539)
T TIGR02456 98 LNHTSD 103 (539)
T ss_pred cCcCCC
Confidence 999753
No 46
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=88.38 E-value=10 Score=44.47 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCC----------------------CCCCCCCCCCCccccCCCC---CCCCCHHH
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQ----------------------SFPLEVPTYPNLWKGAYSK---WERYTVED 265 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~----------------------~~~~e~~~~P~l~~g~~~~---~~~YT~~e 265 (415)
+..-|.+-||.+..+++|.+|+-..=+- .|.|....|=.+ .+.|+. ...-+.+|
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap-e~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL-SGMYSEDPKDPELRIAE 556 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc-ccccccCCcCccccHHH
Confidence 4555666689999999999998664210 132222111111 122221 11123589
Q ss_pred HHHHHHHHHHcCCEEEEeecCCcccchh---hhcCCCCC----C-----CCCCCCcCCCCChhHHHHHHHHHHHHhhcC
Q 014971 266 AHEIVSFAKMRGINVMAEVDVPGHAESW---GAGYPNLW----P-----SPSCREPLDVSKNFTFEVISGILSDLRKIF 332 (415)
Q Consensus 266 i~~lv~yA~~rgI~vIPEiD~PGH~~~~---~~~~p~l~----~-----~~~~~~~ld~~~~~t~~fl~~l~~E~~~lF 332 (415)
+|++|+-|.++||+||-.+ .+.|+... ....|.+. . ...|...++..++.+.+++.+.+.-.++-|
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 88998531 12223221 0 112334566777888888877777666544
No 47
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=88.08 E-value=2 Score=47.11 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=59.4
Q ss_pred eeecCCCC--CCC-HHHHHHHHHHHHhCCCcEEEEEeec----CCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHH
Q 014971 201 LLIDTSRH--YLP-VDVIKQIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSF 272 (415)
Q Consensus 201 ~~lD~aR~--~~~-~~~lk~~id~ma~~K~N~lh~hltD----~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~y 272 (415)
+|+-+-+. +.+ .+...++|+.++..++|.+.+-..- +.||-|+. .|-|.+..+| |.+|+|.+|+.
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~-------~g~yAp~sryGtPedfk~fVD~ 222 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQG-------TGYYAPTSRYGTPEDFKALVDA 222 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCc-------ceeccccccCCCHHHHHHHHHH
Confidence 45555444 333 5666789999999999977664321 12343332 1334555555 99999999999
Q ss_pred HHHcCCEEEEeecCCcccch
Q 014971 273 AKMRGINVMAEVDVPGHAES 292 (415)
Q Consensus 273 A~~rgI~vIPEiD~PGH~~~ 292 (415)
|.++||.||-.. +|||...
T Consensus 223 aH~~GIgViLD~-V~~HF~~ 241 (628)
T COG0296 223 AHQAGIGVILDW-VPNHFPP 241 (628)
T ss_pred HHHcCCEEEEEe-cCCcCCC
Confidence 999999999998 9999865
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=87.79 E-value=2.4 Score=45.00 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEee-cCCC----CCCCCCCCCCccccCC----CCC-CCCCHHHHHHHHHHHHHcCCEEE
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHII-DEQS----FPLEVPTYPNLWKGAY----SKW-ERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hlt-D~~~----~~~e~~~~P~l~~g~~----~~~-~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
-..|.+-+|.++..++|.+.+-.- .+.+ +.+....|=.+ +.| .-+ .+=|.+|+++||+-|.+|||+||
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~--~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDL--GEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeeccccc--ccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 355777889999999999988542 1111 22221111111 000 001 11289999999999999999999
Q ss_pred EeecCCcccc
Q 014971 282 AEVDVPGHAE 291 (415)
Q Consensus 282 PEiD~PGH~~ 291 (415)
-.+ .+-|+.
T Consensus 99 ~D~-V~NH~~ 107 (479)
T PRK09441 99 ADV-VLNHKA 107 (479)
T ss_pred EEE-Cccccc
Confidence 999 899986
No 49
>PLN02784 alpha-amylase
Probab=87.35 E-value=3.4 Score=46.86 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=58.5
Q ss_pred ccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecC--CCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHH
Q 014971 198 FRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDE--QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAK 274 (415)
Q Consensus 198 ~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~--~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~ 274 (415)
.+||..|+-..--=-..|.+-++.++..++|.+.+-..-. ..+.|.... -|..+..| |++|++++|+-|+
T Consensus 506 lQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D-------~y~lds~yGT~~ELk~LI~a~H 578 (894)
T PLN02784 506 CQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKD-------LYNLNSRYGTIDELKDLVKSFH 578 (894)
T ss_pred EEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCccc-------ccccCcCcCCHHHHHHHHHHHH
Confidence 3566666544311157888999999999999998865311 011111111 12222223 8999999999999
Q ss_pred HcCCEEEEeecCCcccch
Q 014971 275 MRGINVMAEVDVPGHAES 292 (415)
Q Consensus 275 ~rgI~vIPEiD~PGH~~~ 292 (415)
++||.||-.+ .+.|+.+
T Consensus 579 ~~GIkVIlDi-ViNH~ag 595 (894)
T PLN02784 579 EVGIKVLGDA-VLNHRCA 595 (894)
T ss_pred HCCCEEEEEE-Ccccccc
Confidence 9999999999 8899864
No 50
>PLN02877 alpha-amylase/limit dextrinase
Probab=87.28 E-value=17 Score=41.94 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 263 VEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 263 ~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
..|+|++|+-|.++||+||-.+ .+-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 4799999999999999999998 888985
No 51
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=87.00 E-value=2.8 Score=45.45 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeec---CCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIID---EQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD---~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
.+.-|.+-||.++..++|.+++-.-= ...+.+....|=.+. ..+=|.+|+++||+-|.++||+||-.+ ++
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id------~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~ 103 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID------PTYGTLDDFDELVAQAKSRGIRIILDM-VF 103 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC------cccCCHHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 46777788999999999999885421 111222222221111 111289999999999999999999999 88
Q ss_pred cccch
Q 014971 288 GHAES 292 (415)
Q Consensus 288 GH~~~ 292 (415)
-|+..
T Consensus 104 NH~s~ 108 (551)
T PRK10933 104 NHTST 108 (551)
T ss_pred CCccC
Confidence 89764
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.13 E-value=8.4 Score=45.76 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCcEEEEEeecCCCCCCCCC----CCCCcc----ccCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEeec
Q 014971 217 QIIESMSYAKLNVLHWHIIDEQSFPLEVP----TYPNLW----KGAYSKWERY---TVEDAHEIVSFAKMRGINVMAEVD 285 (415)
Q Consensus 217 ~~id~ma~~K~N~lh~hltD~~~~~~e~~----~~P~l~----~g~~~~~~~Y---T~~ei~~lv~yA~~rgI~vIPEiD 285 (415)
+.|+.+..+++|.+++-..-. +.-+-. +...-| .+-+.....| |.+|+|++|+-|.++||+||-.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~--~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv- 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFA--SVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV- 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccc--cCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE-
Confidence 567899999999998854311 100000 000001 0112233445 79999999999999999999999
Q ss_pred CCcccchhhhcCCCC-------------C--------CCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 286 VPGHAESWGAGYPNL-------------W--------PSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 286 ~PGH~~~~~~~~p~l-------------~--------~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
++.|+..-....|.+ . ....|.+.+|..+|.+.+++.+.++-..+
T Consensus 268 V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 268 VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 888986321111111 0 00124446777889999988888887776
No 53
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=84.95 E-value=6.4 Score=47.89 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecC----CCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~----~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
.=++.+.+.+.++.++..++|.+.+-.--. ..+.|.+..|-.+. ...=|.++++.|++-|+++||.||-.
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id------p~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN------PEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 346889999999999999999777643111 11222222222221 11127999999999999999999999
Q ss_pred ecCCcccc
Q 014971 284 VDVPGHAE 291 (415)
Q Consensus 284 iD~PGH~~ 291 (415)
+ +|.|+.
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 9 999997
No 54
>PLN00196 alpha-amylase; Provisional
Probab=83.65 E-value=5.5 Score=41.84 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKW--ERYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~--~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
...|.+-++.++..+++.+.+-.--. + ....+|-- ..-|.-+ .+=|.+|+++||+-|+++||+||-.+ .+-|
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~-s--~s~hGY~~--~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv-V~NH 116 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSH-S--VSEQGYMP--GRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI-VINH 116 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCC-C--CCCCCCCc--cccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-CccC
Confidence 45688899999999999998854210 0 00001100 0011121 12389999999999999999999999 8888
Q ss_pred cch
Q 014971 290 AES 292 (415)
Q Consensus 290 ~~~ 292 (415)
+.+
T Consensus 117 ~~~ 119 (428)
T PLN00196 117 RTA 119 (428)
T ss_pred ccc
Confidence 763
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=83.49 E-value=6.5 Score=39.02 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCC--CccccCCCCCCCCCHHHHHHHHH
Q 014971 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP--NLWKGAYSKWERYTVEDAHEIVS 271 (415)
Q Consensus 194 P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P--~l~~g~~~~~~~YT~~ei~~lv~ 271 (415)
|++.+ |++.-- ..+.+-+.++++++.+...++..=.+.+.++ |- ..+- ..+- ....|. +.+++++
T Consensus 7 P~wa~-G~~~~~-~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~---~~~~~~~f~~----d~~~FP--d~~~~i~ 73 (308)
T cd06593 7 PAWSF-GLWLSR-SFYYDEEEVNEFADGMRERNLPCDVIHLDCF--WM---KEFQWCDFEF----DPDRFP--DPEGMLS 73 (308)
T ss_pred chHHH-HHHHHc-ccCCCHHHHHHHHHHHHHcCCCeeEEEEecc--cc---cCCcceeeEE----CcccCC--CHHHHHH
Confidence 56665 665433 2458899999999999999988877766443 21 0110 1110 112232 5789999
Q ss_pred HHHHcCCEEEEeecCCccc-c--hhhhc-CCCC-C--CCC---------CCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 272 FAKMRGINVMAEVDVPGHA-E--SWGAG-YPNL-W--PSP---------SCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~-~--~~~~~-~p~l-~--~~~---------~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
..+++|++++.-++ |.=. . .+... .+.+ . .+. .....+|.+||++.++..+.++++.+
T Consensus 74 ~l~~~G~~~~~~~~-P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 74 RLKEKGFKVCLWIN-PYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred HHHHCCCeEEEEec-CCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999875 4210 0 01100 0110 0 000 01235899999999999999998876
No 56
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=83.18 E-value=4 Score=45.15 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCC-----CCCCCCCCCCCccccCCCCCCCC-CHH------HHHHHHHHHHHcCCEEEE
Q 014971 215 IKQIIESMSYAKLNVLHWHIIDEQ-----SFPLEVPTYPNLWKGAYSKWERY-TVE------DAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 215 lk~~id~ma~~K~N~lh~hltD~~-----~~~~e~~~~P~l~~g~~~~~~~Y-T~~------ei~~lv~yA~~rgI~vIP 282 (415)
..+.+..+..+++|.+|+-..-.. +|.|....+ +++..+| |.+ |+|++|+-|..+||+|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF-------FapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF-------FAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe-------ecccccccCCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 455677888889999999765333 444432211 1122222 455 999999999999999999
Q ss_pred eecCCcccchhhhcCCC--C---------------CCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 283 EVDVPGHAESWGAGYPN--L---------------WPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 283 EiD~PGH~~~~~~~~p~--l---------------~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
+| .-.|+.. -...|. + .....|.+.+|-..+.+.+||-+=++-...
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 98 7788766 211111 1 111235677999999999988776555543
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=81.48 E-value=24 Score=37.10 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCC---CCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHH-HcCCEEEEeecCC
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSF---PLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAK-MRGINVMAEVDVP 287 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~---~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~-~rgI~vIPEiD~P 287 (415)
.+...+.++..+..++|.+|+-.--.-|- +|.+...=++...-+....-++.+++++++.-++ ++|+-.+-.| ..
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-V~ 99 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-VL 99 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-ee
Confidence 56778888999999999999853211110 1111110011111122344578899999999985 8999999888 77
Q ss_pred cccc---hhhhcCCCCCCC
Q 014971 288 GHAE---SWGAGYPNLWPS 303 (415)
Q Consensus 288 GH~~---~~~~~~p~l~~~ 303 (415)
-|+. .|+..|||-+.+
T Consensus 100 NHtA~nS~Wl~eHPEagYN 118 (423)
T PF14701_consen 100 NHTANNSPWLREHPEAGYN 118 (423)
T ss_pred ccCcCCChHHHhCcccccC
Confidence 7875 499999987543
No 58
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=79.26 E-value=20 Score=37.32 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=78.3
Q ss_pred CCCCcccceeecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHH
Q 014971 193 KPRFAFRGLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVS 271 (415)
Q Consensus 193 ~P~f~~RG~~lD~aR~-~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~ 271 (415)
-|++.+ |+++ +|. +.+.+.++++++.+...++-.=.+++.++-. - .+...+ + ....+. +.+++++
T Consensus 25 pP~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~--~---~~~~f~---~-d~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 25 PPRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQ--D---GYGDFT---W-DPERFP--DPKQMID 90 (441)
T ss_dssp --GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGS--B---TTBTT----B--TTTTT--THHHHHH
T ss_pred Cchhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceecccccc--c---cccccc---c-cccccc--chHHHHH
Confidence 477777 8888 443 4579999999999999999977777655411 1 111221 0 112232 8899999
Q ss_pred HHHHcCCEEEEeecCCcccch-----hh--hcCCCCCCCCC-----------CCCcCCCCChhHHHHHHHHHHHHhhcCC
Q 014971 272 FAKMRGINVMAEVDVPGHAES-----WG--AGYPNLWPSPS-----------CREPLDVSKNFTFEVISGILSDLRKIFP 333 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~~~-----~~--~~~p~l~~~~~-----------~~~~ld~~~~~t~~fl~~l~~E~~~lFp 333 (415)
..+++|+++++-++--=+... +. ...--+..+.. ....+|.++|++.+...+.++++.+.++
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G 170 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG 170 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC
Confidence 999999999987743211111 10 01111111110 1235999999999999999999988765
Q ss_pred CCeEEeCC
Q 014971 334 FELFHLGG 341 (415)
Q Consensus 334 ~~~~HiGg 341 (415)
-..+=+=.
T Consensus 171 vdg~w~D~ 178 (441)
T PF01055_consen 171 VDGWWLDF 178 (441)
T ss_dssp -SEEEEES
T ss_pred CceEEeec
Confidence 54444433
No 59
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=78.43 E-value=32 Score=38.29 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE-EeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee-cCC
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHW-HIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV-DVP 287 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~-hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi-D~P 287 (415)
+|-+.+++-|+.|...++|++-. .+. |..- -|+ .|.|. +|.-|.. +++.|..-|+.||--- -+.
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~fa----W~~~---eP~--eG~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFA----WNLH---EPE--EGKFD----FTWLDEI-FLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEE----eecc---Ccc--ccccC----cccchHH-HHHHHHhcCceEEEecCCCC
Confidence 55688999999999999998877 552 4331 222 23332 3444444 7999999999999765 345
Q ss_pred cccchhhhcCCCCCC--------CCCCCCcCCCCChhHHHHHHHHHHHHhhc-CC----CCeEEeCCCCCCC-cCC
Q 014971 288 GHAESWGAGYPNLWP--------SPSCREPLDVSKNFTFEVISGILSDLRKI-FP----FELFHLGGDEVNT-DCW 349 (415)
Q Consensus 288 GH~~~~~~~~p~l~~--------~~~~~~~ld~~~~~t~~fl~~l~~E~~~l-Fp----~~~~HiGgDEv~~-~~w 349 (415)
++..++.+.||+... .+...+.+|++++--.+.+..|++.+.+- +. --.+|+-- |+.. .||
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~~~~~ 167 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGGHPCY 167 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCCcccc
Confidence 666666778998732 12234579999996667888888777765 42 24567655 7655 566
No 60
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=77.94 E-value=38 Score=39.00 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCEEEEeecCCcccch
Q 014971 264 EDAHEIVSFAKMRGINVMAEVDVPGHAES 292 (415)
Q Consensus 264 ~ei~~lv~yA~~rgI~vIPEiD~PGH~~~ 292 (415)
+|+|++|+-|.++||+||-.+ .+-|+..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~ 431 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNA 431 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccc
Confidence 699999999999999999998 7888764
No 61
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=76.99 E-value=7.7 Score=42.77 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCcEEEEEeecCC----CCCCCCCCCCCccccCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 014971 216 KQIIESMSYAKLNVLHWHIIDEQ----SFPLEVPTYPNLWKGAYS------KWERYTVEDAHEIVSFAKMRGINVMAEVD 285 (415)
Q Consensus 216 k~~id~ma~~K~N~lh~hltD~~----~~~~e~~~~P~l~~g~~~------~~~~YT~~ei~~lv~yA~~rgI~vIPEiD 285 (415)
..+-|.+...+++.+|+-..-.. ||.+- |.. .|.|. ...+=|.+|++++++-|.+|||+||-.+
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t----P~~-D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl- 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT----PSI-DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI- 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC----CCC-CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 45678888899999998543211 11110 110 11121 1122399999999999999999999988
Q ss_pred CCcccch
Q 014971 286 VPGHAES 292 (415)
Q Consensus 286 ~PGH~~~ 292 (415)
.|+|+..
T Consensus 151 VpnHTs~ 157 (688)
T TIGR02455 151 IPAHTGK 157 (688)
T ss_pred CCCCCCC
Confidence 8999863
No 62
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=76.63 E-value=7.7 Score=38.96 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCC-CCCCCCHHHHHHHHH
Q 014971 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYS-KWERYTVEDAHEIVS 271 (415)
Q Consensus 193 ~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~-~~~~YT~~ei~~lv~ 271 (415)
-|++.+.+.+ +|.+.+-+.++++++.+...++-.=.+++-|.+.......++ ..+. .+. ....| .|.+++++
T Consensus 6 ~P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~-~~~~-~f~~d~~~F--Pdp~~mi~ 78 (317)
T cd06594 6 LPDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGD-RLWW-NWEWDPERY--PGLDELIE 78 (317)
T ss_pred CchhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccc-eeee-eeEEChhhC--CCHHHHHH
Confidence 4666666555 354459999999999999998886666664322110000000 0000 000 11122 26789999
Q ss_pred HHHHcCCEEEEeecCCcccc---hh-hhcC-CC-CCC--C---------CCCCCcCCCCChhHHHHHHHHHHHH
Q 014971 272 FAKMRGINVMAEVDVPGHAE---SW-GAGY-PN-LWP--S---------PSCREPLDVSKNFTFEVISGILSDL 328 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~~---~~-~~~~-p~-l~~--~---------~~~~~~ld~~~~~t~~fl~~l~~E~ 328 (415)
.-+++|++|++-|+ |+-.. .. ..+. .. +.. + +.....+|.+||++.+...+.++++
T Consensus 79 ~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 79 ELKARGIRVLTYIN-PYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHHCCCEEEEEec-CceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 99999999999876 54221 00 1000 00 000 0 0112359999999999998888877
No 63
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.44 E-value=9.7 Score=38.17 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=74.0
Q ss_pred CCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCC---CCCCCCccccCCCCCCCCCHHHHHHH
Q 014971 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLE---VPTYPNLWKGAYSKWERYTVEDAHEI 269 (415)
Q Consensus 193 ~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e---~~~~P~l~~g~~~~~~~YT~~ei~~l 269 (415)
-|++.+ |++.-. -.+.+-+.+.++++.+...++-+=.+++.++ |--. -..+...+ + ....|. |.+++
T Consensus 6 ~P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--w~~~~~~~~~~~~f~---w-d~~~FP--dp~~m 75 (317)
T cd06598 6 PPRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLY--WFGKDIDKGHMGNLD---W-DRKAFP--DPAGM 75 (317)
T ss_pred CchHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEech--hhcCcccCCceeeeE---e-ccccCC--CHHHH
Confidence 366666 666433 2456789999999999999887555555322 2100 00111111 0 122332 56889
Q ss_pred HHHHHHcCCEEEEeecCCc-ccch------hhhcC---------C---CCCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 270 VSFAKMRGINVMAEVDVPG-HAES------WGAGY---------P---NLWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 270 v~yA~~rgI~vIPEiD~PG-H~~~------~~~~~---------p---~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
++.-+++|++|++-++ |+ .... ..+++ | ..++ .....+|.+||++.+...+.++++.+
T Consensus 76 i~~L~~~G~k~~~~v~-P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (317)
T cd06598 76 IADLAKKGVKTIVITE-PFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWF--GNTGLIDWFDPAAQAWFHDNYKKLID 152 (317)
T ss_pred HHHHHHcCCcEEEEEc-CcccCCchhHHHHHhCCCEEEECCCCCEeeeeccC--CCccccCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999985 32 1110 01111 0 0000 11235899999999999999998754
No 64
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=75.43 E-value=9.7 Score=39.43 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..||++++++|+++|+++||-||-.
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~D 202 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIISD 202 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 45799999999999999999988754
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.27 E-value=21 Score=35.52 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSK-WERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~-~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
..++-+.++++++.|..+++..=.+++-|+ |- ..+ |.+.. ...|. +.+++++.-+++|+++++-++
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~-----g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~- 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---TCY-----GDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH- 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---ccC-----CccccChhhCC--CHHHHHHHHHHCCCeEEEEEC-
Confidence 457889999999999999987555555332 31 111 11211 12343 589999999999999998774
Q ss_pred Ccccc---hhhh-cCCCC-CC--CC----------CCCCcCCCCChhHHHHHHHHHHHHh
Q 014971 287 PGHAE---SWGA-GYPNL-WP--SP----------SCREPLDVSKNFTFEVISGILSDLR 329 (415)
Q Consensus 287 PGH~~---~~~~-~~p~l-~~--~~----------~~~~~ld~~~~~t~~fl~~l~~E~~ 329 (415)
|+-.. .+.. ....+ .. ++ .....+|++||++.+...+.++++.
T Consensus 92 P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 PFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 42211 0110 00111 00 00 1123599999999999999999887
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=74.95 E-value=16 Score=39.79 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=98.0
Q ss_pred ecCCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCcc--ccCCC--CCCCCCHHHH
Q 014971 191 QDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW--KGAYS--KWERYTVEDA 266 (415)
Q Consensus 191 ~D~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~--~g~~~--~~~~YT~~ei 266 (415)
.||-+||--|++=|.... .+.+...+.|+.|+.+.+|.++++ |--||-.-+-.+.-. ...|. .+...+.+=|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 589999999999774433 456899999999999999999974 333333221111110 01111 1234678889
Q ss_pred HHHHHHHHHcCCEEEEeecCCcccchhhh--cCCCC--CCCCC---------------CCCcCCCCChhHHHHHHHHHHH
Q 014971 267 HEIVSFAKMRGINVMAEVDVPGHAESWGA--GYPNL--WPSPS---------------CREPLDVSKNFTFEVISGILSD 327 (415)
Q Consensus 267 ~~lv~yA~~rgI~vIPEiD~PGH~~~~~~--~~p~l--~~~~~---------------~~~~ld~~~~~t~~fl~~l~~E 327 (415)
|+.|+.|+++|+..++=.-+-|=...... ..|+- ...+. ...-+||+|++=.+.+-+=+.+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~ 252 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNK 252 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999998655553332211 11211 00000 0124799999988888888888
Q ss_pred HhhcCCCCeEEe---CCCCCCCcCCCCCHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHHhCCCeEEEecccc
Q 014971 328 LRKIFPFELFHL---GGDEVNTDCWSSTPHVKKWLRDHKL---TAKEAYQYFVLTAQKIAISKNWTPVNWFVLF 395 (415)
Q Consensus 328 ~~~lFp~~~~Hi---GgDEv~~~~w~~~p~~~~~~~~~g~---~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 395 (415)
+.+-|+-.=||| | +-... |.. .|. ...+.|..|++++.+.+ ..+.++-|.+-
T Consensus 253 ~~~~~gFDG~hlDq~G-~~~~~--~d~----------~G~~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V~ 310 (559)
T PF13199_consen 253 AIQNFGFDGWHLDQLG-NRGTV--YDY----------DGNKIYDLSDGYASFINAMKEAL---PDKYLVFNAVS 310 (559)
T ss_dssp HHHHHT--EEEEE-S---EEEE--GGT----------T---GGECHHHHHHHHHHHHHHS---TTSEEEEB-GG
T ss_pred HHHccCCceEeeeccC-CCCcc--ccC----------CCCCchhhHHHHHHHHHHHHHhC---CCCceeeeccC
Confidence 888777766775 3 11111 111 111 22467889998887754 23335555443
No 67
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=73.48 E-value=49 Score=33.66 Aligned_cols=107 Identities=17% Similarity=0.330 Sum_probs=68.7
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhh
Q 014971 216 KQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGA 295 (415)
Q Consensus 216 k~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~ 295 (415)
+.+++.|+.+++|..=+++--++. . .+..+.+++.++.+.|++.|.+|...+ |
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~----------------~-~g~~~~~~~~~~akrak~~Gm~vlldf----H------ 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPY----------------D-GGYNDLEDVIALAKRAKAAGMKVLLDF----H------ 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-T----------------T-TTTTSHHHHHHHHHHHHHTT-EEEEEE-----------
T ss_pred CCHHHHHHhcCCCeEEEEeccCCc----------------c-cccCCHHHHHHHHHHHHHCCCeEEEee----c------
Confidence 568899999999999998743321 1 357899999999999999999999877 3
Q ss_pred cCCCCCCCCCC--------CCcCCCCChhHHHHHHHHHHHHhhcCC-CCeEEeCCCCCCCcCCC
Q 014971 296 GYPNLWPSPSC--------REPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGDEVNTDCWS 350 (415)
Q Consensus 296 ~~p~l~~~~~~--------~~~ld~~~~~t~~fl~~l~~E~~~lFp-~~~~HiGgDEv~~~~w~ 350 (415)
|.+.|.++.. ...++-....+|++.+++++++.+.-- ..++-||-.=-++-+|.
T Consensus 80 -YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp 142 (332)
T PF07745_consen 80 -YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWP 142 (332)
T ss_dssp -SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBT
T ss_pred -ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCc
Confidence 3343322110 112333457889999999999977653 47888875444455663
No 68
>PLN02187 rooty/superroot1
Probab=72.91 E-value=13 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 218 G~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 218 GNVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CCccCHHHHHHHHHHHHHCCCEEE
Confidence 457999999999999999998766
No 69
>PRK09505 malS alpha-amylase; Reviewed
Probab=71.24 E-value=19 Score=40.22 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC--CCCCCC--CCCCCcc-ccCC-----CC-CCCCCHHHHHHHHHHHHHcCCEE
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQ--SFPLEV--PTYPNLW-KGAY-----SK-WERYTVEDAHEIVSFAKMRGINV 280 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~--~~~~e~--~~~P~l~-~g~~-----~~-~~~YT~~ei~~lv~yA~~rgI~v 280 (415)
+.-|.+-||.++..++|.+.+-.-=.+ ++.-.. ..+|.-+ .|-+ .- ..+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 777888899999999999987532110 000000 0011111 1100 01 11228999999999999999999
Q ss_pred EEeecCCcccc
Q 014971 281 MAEVDVPGHAE 291 (415)
Q Consensus 281 IPEiD~PGH~~ 291 (415)
|-.+ .+-|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9999 888887
No 70
>PLN03244 alpha-amylase; Provisional
Probab=70.51 E-value=17 Score=41.06 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCcccchh----h---hcCCCCCC--C--C----CCCCcCCCCChhHHHHHHHHHH
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAESW----G---AGYPNLWP--S--P----SCREPLDVSKNFTFEVISGILS 326 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~----~---~~~p~l~~--~--~----~~~~~ld~~~~~t~~fl~~l~~ 326 (415)
|.+|++.+|+-|.++||.||-.+ .++|+..= + .+-+.+.. . + -....+|..++++..|+-+-+.
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 89999999999999999999999 89998531 1 11121110 0 0 0113588999999999999888
Q ss_pred HHhhcC
Q 014971 327 DLRKIF 332 (415)
Q Consensus 327 E~~~lF 332 (415)
-.++-|
T Consensus 518 yWleEy 523 (872)
T PLN03244 518 WWITEY 523 (872)
T ss_pred HHHHHh
Confidence 777544
No 71
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=69.46 E-value=13 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..|+.+++++|++.|+++|+-||-
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999998773
No 72
>PLN02368 alanine transaminase
Probab=69.44 E-value=13 Score=38.50 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..||++++++|++.|+++++-||-
T Consensus 224 G~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 224 GQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999998774
No 73
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=67.72 E-value=26 Score=35.93 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||.+++++|++.|+++++-||
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 189 TGTVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred cCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 3568999999999999999998776
No 74
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=66.98 E-value=2.2e+02 Score=31.93 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred ccceeecCCCCCCC-----HHHHHHHHHHHHhCCCcEEEEEeecC---CCCCCCCCCCCCcc-ccCCCCCCCCCHHHHHH
Q 014971 198 FRGLLIDTSRHYLP-----VDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268 (415)
Q Consensus 198 ~RG~~lD~aR~~~~-----~~~lk~~id~ma~~K~N~lh~hltD~---~~~~~e~~~~P~l~-~g~~~~~~~YT~~ei~~ 268 (415)
.|-+|+|.---+-| .+.|-.+||.+...|+|++-++.--+ .|. +.+.-+|.=. .| ...-|++-..
T Consensus 314 ~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~---r~d~f~~~aw-- 387 (671)
T PRK14582 314 QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM---RADLFNRVAW-- 387 (671)
T ss_pred EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc---ccCCcCHHHH--
Confidence 46667765433322 46788999999999999999987221 111 1122233211 11 1122333222
Q ss_pred HHHHHHHcCCEEEEeecCCcccchhhhcCC-------CCCC---CCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEE
Q 014971 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYP-------NLWP---SPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFH 338 (415)
Q Consensus 269 lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p-------~l~~---~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~H 338 (415)
+.|.++|++|.--+.+-+=. +-...| ...+ .+.....|||.+|++.+++++++.|++.-.+-.=||
T Consensus 388 --~l~~r~~v~v~AWmp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGil 463 (671)
T PRK14582 388 --QLRTRAGVNVYAWMPVLSFD--LDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGIL 463 (671)
T ss_pred --HHHHhhCCEEEEeccceeec--cCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence 22889999998766544311 000011 1000 011123499999999999999999999877766666
Q ss_pred eCCCCCCCcCCCCCHHHHHHHHHCCCCh--------HH-----------HHHHHHHHHHHHHHhC
Q 014971 339 LGGDEVNTDCWSSTPHVKKWLRDHKLTA--------KE-----------AYQYFVLTAQKIAISK 384 (415)
Q Consensus 339 iGgDEv~~~~w~~~p~~~~~~~~~g~~~--------~~-----------l~~~f~~~~~~~v~~~ 384 (415)
+=-|=+-..-=..+|.-.+..++.|+.. .+ .+..|.+++.+.++..
T Consensus 464 f~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~ 528 (671)
T PRK14582 464 FHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAI 528 (671)
T ss_pred ecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6555443321123455444445566521 11 2346778888888763
No 75
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=66.95 E-value=1.1e+02 Score=30.95 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
+|.+-+.++++++.+...++..=.+++.++ |- +.+-..+ + ....|..-..+++++..+++|++|++-++ |
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~FPdp~~~~mi~~L~~~G~k~~~~i~-P 88 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDID--YM---DRRRDFT---L-DPVRFPGLKMPEFVDELHANGQHYVPILD-P 88 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcc--cc---cCcccee---c-ccccCCCccHHHHHHHHHHCCCEEEEEEe-C
Confidence 456899999999999999998666665322 21 1111111 0 11233322448999999999999999885 4
Q ss_pred cccch-hhhcCCCC---------CC--C---------CCCCCcCCCCChhHHHHHHHHHHHHhhc
Q 014971 288 GHAES-WGAGYPNL---------WP--S---------PSCREPLDVSKNFTFEVISGILSDLRKI 331 (415)
Q Consensus 288 GH~~~-~~~~~p~l---------~~--~---------~~~~~~ld~~~~~t~~fl~~l~~E~~~l 331 (415)
+-... -...|+.+ +. . +.....+|.+||++.+...+.++++..-
T Consensus 89 ~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 89 AISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred ccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 42210 00001100 00 0 0112348999999999999988887653
No 76
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=66.80 E-value=27 Score=35.55 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..+|.+++++|++.|+++++-||=
T Consensus 186 G~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 186 GADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4579999999999999999998764
No 77
>PRK06348 aspartate aminotransferase; Provisional
Probab=65.99 E-value=16 Score=37.12 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..+|.+++++|++.|+++|+-||
T Consensus 176 G~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 176 GAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEE
Confidence 457999999999999999998766
No 78
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=65.82 E-value=18 Score=36.87 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++++-||
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 180 GAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999999776
No 79
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=65.65 E-value=21 Score=36.72 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++++-||
T Consensus 184 G~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 184 GSVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEE
Confidence 457999999999999999998776
No 80
>PRK07681 aspartate aminotransferase; Provisional
Probab=65.16 E-value=22 Score=36.36 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||++++++|++.|+++|+-||
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 467999999999999999999776
No 81
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.75 E-value=12 Score=35.72 Aligned_cols=76 Identities=11% Similarity=-0.082 Sum_probs=49.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014971 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (415)
Q Consensus 197 ~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r 276 (415)
..||..++..+..-..+.+++.|+.++..+...+..+.. ..-+.....+.+ ....+.++++++||+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g----~~~~~~~~~~~~--------~~~~~~l~~l~~~A~~~ 135 (254)
T TIGR03234 68 GERGIACLPGREEEFREGVALAIAYARALGCPQVNCLAG----KRPAGVSPEEAR--------ATLVENLRYAADALDRI 135 (254)
T ss_pred CCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcC----CCCCCCCHHHHH--------HHHHHHHHHHHHHHHhc
Confidence 356666655544323678899999999999998876531 100000000100 12346799999999999
Q ss_pred CCEEEEee
Q 014971 277 GINVMAEV 284 (415)
Q Consensus 277 gI~vIPEi 284 (415)
||++.-|-
T Consensus 136 gi~l~lE~ 143 (254)
T TIGR03234 136 GLTLLIEP 143 (254)
T ss_pred CCEEEEEE
Confidence 99999995
No 82
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=63.64 E-value=23 Score=36.84 Aligned_cols=166 Identities=15% Similarity=0.231 Sum_probs=98.6
Q ss_pred EEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcc---------cceeecCCCCC-CCHHHHHHHHH
Q 014971 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAF---------RGLLIDTSRHY-LPVDVIKQIIE 220 (415)
Q Consensus 151 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~---------RG~~lD~aR~~-~~~~~lk~~id 220 (415)
|.+++ ||-.|+.++++|+-..... .+.+| |--+|-|.- =...||-.++| +.++.|++.++
T Consensus 139 I~LT~----GAS~ai~~il~l~~~~~~~-GvliP-----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~ 208 (475)
T KOG0258|consen 139 IFLTT----GASPAIRSILSLLIAGKKT-GVLIP-----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVD 208 (475)
T ss_pred eeecC----CCcHHHHHHHHHHhcCCCC-ceEee-----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHH
Confidence 77775 5666788899998766433 34455 334555521 12345666665 55667777776
Q ss_pred HHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCC
Q 014971 221 SMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNL 300 (415)
Q Consensus 221 ~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l 300 (415)
... -.+|.=-+-.- | .|. ..+..+|.+-+++|+.+|++.|+-++..- .|.
T Consensus 209 eA~-k~i~~r~lvvI-N--------------PGN-PTGqvls~e~ie~i~~fa~~~~l~llaDE-----------VYQ-- 258 (475)
T KOG0258|consen 209 EAR-KGINPRALVVI-N--------------PGN-PTGQVLSEENIEGIICFAAEEGLVLLADE-----------VYQ-- 258 (475)
T ss_pred HHh-ccCCceEEEEE-C--------------CCC-ccchhhcHHHHHHHHHHHHHcCeEEechH-----------HHH--
Confidence 665 44442222110 1 111 23567999999999999999999886542 111
Q ss_pred CCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHHHHHHHHHCCC
Q 014971 301 WPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKL 364 (415)
Q Consensus 301 ~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~ 364 (415)
.+.+. +.+-+-=.++++.|+-+.+++...-+----+..+-|.+|....-+|+--|+
T Consensus 259 ------~Nvy~--~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~ 314 (475)
T KOG0258|consen 259 ------DNVYT--TGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNR 314 (475)
T ss_pred ------hhccC--CCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccC
Confidence 12222 233455678999999998886665555555656666666444444443333
No 83
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=63.52 E-value=28 Score=41.78 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCC---CCCCCCCCCCccccCCCCCCC----CCHHHHHHHHHHHHHc-CCEEEEe
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQS---FPLEVPTYPNLWKGAYSKWER----YTVEDAHEIVSFAKMR-GINVMAE 283 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~---~~~e~~~~P~l~~g~~~~~~~----YT~~ei~~lv~yA~~r-gI~vIPE 283 (415)
.+...+.++.++..+.|.+|+-.--..| =+|.+..|=++ .... -+.+|++++|+-|.++ |+.+|-.
T Consensus 131 ~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i------dP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 131 LSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL------NQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc------ChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778899999999999999985321000 01111111000 0111 3789999999999996 9999999
Q ss_pred ecCCcccch---hhhcCCCC
Q 014971 284 VDVPGHAES---WGAGYPNL 300 (415)
Q Consensus 284 iD~PGH~~~---~~~~~p~l 300 (415)
+ +..|+.. |+..|||-
T Consensus 205 v-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 205 I-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred e-eecccccCCHHHHhChHh
Confidence 8 8888864 88888874
No 84
>PTZ00377 alanine aminotransferase; Provisional
Probab=63.20 E-value=28 Score=36.75 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++++-||
T Consensus 232 G~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 232 GQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEE
Confidence 457999999999999999999766
No 85
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=63.01 E-value=25 Score=35.85 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
+..++.+.++++|+.++..+.- .+.++- ++.+...|+.+|+++++++|+.+ .|.|
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~~--~v~~~G---------------------GEPll~~~~~~il~~~~~~g~~~--~i~T 97 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGAL--QLHFSG---------------------GEPLLRKDLEELVAHARELGLYT--NLIT 97 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCCc--EEEEEC---------------------CccCCchhHHHHHHHHHHcCCcE--EEEC
Confidence 4568999999999999887653 444432 23334557888899998888755 4666
Q ss_pred Ccc
Q 014971 287 PGH 289 (415)
Q Consensus 287 PGH 289 (415)
=|.
T Consensus 98 NG~ 100 (378)
T PRK05301 98 SGV 100 (378)
T ss_pred CCc
Confidence 665
No 86
>PRK07337 aminotransferase; Validated
Probab=62.95 E-value=26 Score=35.49 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..+|.+|+++|++.|+++|+-||-+
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45799999999999999999877643
No 87
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=62.67 E-value=29 Score=31.14 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
++.+++.++.++.++...+.+|... |+. .++... ...-....+-++++.++|+++||++..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~----~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPS----GPEDDT---EENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESS----STTSSH---HHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---ccc----ccCCCH---HHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999641 101 011100 00112345679999999999999999995
No 88
>PRK05839 hypothetical protein; Provisional
Probab=61.99 E-value=61 Score=32.79 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..|+.+++++|++.|+++|+-||
T Consensus 169 G~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 169 GRTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred CcccCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999999877
No 89
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.58 E-value=27 Score=34.48 Aligned_cols=128 Identities=16% Similarity=0.261 Sum_probs=71.3
Q ss_pred CCCCcccceeecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCC--CCCCccccCCCC-CCCCCHHHHHH
Q 014971 193 KPRFAFRGLLIDTSR-HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVP--TYPNLWKGAYSK-WERYTVEDAHE 268 (415)
Q Consensus 193 ~P~f~~RG~~lD~aR-~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~--~~P~l~~g~~~~-~~~YT~~ei~~ 268 (415)
-|++.+ |++. +| .+.+-+.++++++.+...++-.=.+++-++ |..... .+...+ +.+.. ...| .|.++
T Consensus 7 ~P~wal-G~~q--sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~d--w~~~~~~~~~~~~~-~~ft~d~~~F--Pdp~~ 78 (292)
T cd06595 7 LPRYAF-GNWW--SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMD--WHVTDIPSKYGSGW-TGYSWNRKLF--PDPEK 78 (292)
T ss_pred CchHHH-HhHh--hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecc--cccccccccccCCc-ceeEEChhcC--CCHHH
Confidence 466666 7775 35 467899999999999999888655655322 221100 000000 11111 1223 26789
Q ss_pred HHHHHHHcCCEEEEeecCCccc-chhhhcCCCCCC----C--CCCCCcCCCCChhHHHHH-HHHHHHHh
Q 014971 269 IVSFAKMRGINVMAEVDVPGHA-ESWGAGYPNLWP----S--PSCREPLDVSKNFTFEVI-SGILSDLR 329 (415)
Q Consensus 269 lv~yA~~rgI~vIPEiD~PGH~-~~~~~~~p~l~~----~--~~~~~~ld~~~~~t~~fl-~~l~~E~~ 329 (415)
+++..++.|++++.-+ -|+.. ..-...|.++.. . ......+|+++|++.+.. +.+.+.+.
T Consensus 79 mi~~Lh~~G~k~v~~v-~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 79 LLQDLHDRGLKVTLNL-HPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred HHHHHHHCCCEEEEEe-CCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999877 44421 110011222210 0 001136899999999844 55555443
No 90
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=60.89 E-value=26 Score=35.03 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..|+.+++++|++.|+++|+-||
T Consensus 150 G~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 150 GATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred CcccCHHHHHHHHHHHHHcCcEEE
Confidence 457999999999999999998766
No 91
>PRK08636 aspartate aminotransferase; Provisional
Probab=60.82 E-value=66 Score=32.88 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||.+++++|++.|+++++-||
T Consensus 188 TG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 188 TTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEE
Confidence 3567999999999999999999777
No 92
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=60.74 E-value=38 Score=33.65 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
..++++.|++.++....+.-+.=-+.++-.. + +..+..||.+|+++|.++|+++||.|.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~----------~-----~~GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTT----------E-----LAGGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSB----------T-----TTTSB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecC----------c-----CCCCeeCCHHHHHHHHHHHHhCceEEE
Confidence 6689999999999887744444444443110 1 113568999999999999999998873
No 93
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=60.58 E-value=27 Score=35.92 Aligned_cols=24 Identities=4% Similarity=0.245 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..+|.+++++|++.|+++|+-||
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEE
Confidence 456899999999999999998766
No 94
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=60.32 E-value=1.4e+02 Score=30.27 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
.+.-+|=|..|..++.|++.++-.|. .. +=.+.....++-||-||-.+++|+ .
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vdp-----------~~--------------nHd~CM~~~~~aGIYvi~Dl~~p~--~ 104 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVDP-----------SK--------------NHDECMSAFADAGIYVILDLNTPN--G 104 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES---T-----------TS----------------HHHHHHHHHTT-EEEEES-BTT--B
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeCC-----------CC--------------CHHHHHHHHHhCCCEEEEecCCCC--c
Confidence 56788999999999999999865433 21 334566667789999999999994 3
Q ss_pred hhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHHHHHHHHHCCCChHHHHH
Q 014971 292 SWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQ 371 (415)
Q Consensus 292 ~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~ 371 (415)
++-+..|.- .. +..-++-...+++.++. |+...--.-|.||.... .+ ...+....
T Consensus 105 sI~r~~P~~--------sw---~~~l~~~~~~vid~fa~-Y~N~LgFf~GNEVin~~--~~-----------t~aap~vK 159 (314)
T PF03198_consen 105 SINRSDPAP--------SW---NTDLLDRYFAVIDAFAK-YDNTLGFFAGNEVINDA--SN-----------TNAAPYVK 159 (314)
T ss_dssp S--TTS-----------------HHHHHHHHHHHHHHTT--TTEEEEEEEESSS-ST--T------------GGGHHHHH
T ss_pred cccCCCCcC--------CC---CHHHHHHHHHHHHHhcc-CCceEEEEecceeecCC--CC-----------cccHHHHH
Confidence 333333311 00 33445666666766654 45544445566775431 01 01123445
Q ss_pred HHHHHHHHHHHhCCCeE
Q 014971 372 YFVLTAQKIAISKNWTP 388 (415)
Q Consensus 372 ~f~~~~~~~v~~~g~~~ 388 (415)
..++.+..+++++|.|.
T Consensus 160 AavRD~K~Yi~~~~~R~ 176 (314)
T PF03198_consen 160 AAVRDMKAYIKSKGYRS 176 (314)
T ss_dssp HHHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 67788888888887653
No 95
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=60.06 E-value=27 Score=35.22 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
+..++.+.++++++.+...+.-. ++++.. +..-..|+.+|++||+++|+.+ .+.|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~--v~~~GG---------------------EPll~~~~~~ii~~~~~~g~~~--~l~T 88 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQ--LHFSGG---------------------EPLARPDLVELVAHARRLGLYT--NLIT 88 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcE--EEEeCc---------------------cccccccHHHHHHHHHHcCCeE--EEEe
Confidence 45689999999999998877544 444322 2223447889999999998764 4667
Q ss_pred Cccc
Q 014971 287 PGHA 290 (415)
Q Consensus 287 PGH~ 290 (415)
-|..
T Consensus 89 NG~l 92 (358)
T TIGR02109 89 SGVG 92 (358)
T ss_pred CCcc
Confidence 6753
No 96
>PRK08068 transaminase; Reviewed
Probab=59.73 E-value=23 Score=35.96 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..|+.+++++|++.|+++++-||
T Consensus 180 TG~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 180 TGAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 3557999999999999999999776
No 97
>PRK08960 hypothetical protein; Provisional
Probab=59.11 E-value=27 Score=35.50 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..++.+++++|++.|+++|+-||-
T Consensus 179 G~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 179 GTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999997763
No 98
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=58.69 E-value=71 Score=31.98 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=67.9
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHH
Q 014971 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFA 273 (415)
Q Consensus 194 P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA 273 (415)
|++.+ |++.-- -.+.+-+.++++++.+..+++..=.+++..+ -|. -..+..++ + ....|. +.+++++..
T Consensus 7 P~wal-G~~~sr-~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~---~-d~~~FP--dp~~mi~~L 75 (319)
T cd06591 7 PKWAY-GFWQSK-ERYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK---F-DPERFP--DPKAMVREL 75 (319)
T ss_pred chHHH-HHHHhc-ccCCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE---E-ChhhCC--CHHHHHHHH
Confidence 44444 555422 2456899999999999999888666655322 110 00011221 0 111222 578999999
Q ss_pred HHcCCEEEEeecCCccc---chhhhcC-CCC-CCC-C---------CCCCcCCCCChhHHHHHHHHHHH
Q 014971 274 KMRGINVMAEVDVPGHA---ESWGAGY-PNL-WPS-P---------SCREPLDVSKNFTFEVISGILSD 327 (415)
Q Consensus 274 ~~rgI~vIPEiD~PGH~---~~~~~~~-p~l-~~~-~---------~~~~~ld~~~~~t~~fl~~l~~E 327 (415)
+++||+|++-++ |+=. ..+.... ..+ ..+ . .....+|.+||++.+...+.+++
T Consensus 76 ~~~G~kv~~~i~-P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 76 HEMNAELMISIW-PTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHCCCEEEEEec-CCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999998775 5411 1111000 000 000 0 11236999999999977665554
No 99
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=57.63 E-value=68 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||++++++|++.|+++++-||
T Consensus 186 TG~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 186 TGTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3568999999999999999998776
No 100
>PLN02231 alanine transaminase
Probab=56.40 E-value=44 Score=36.11 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
.+..||.+++++|++.|+++|+-||-
T Consensus 284 TG~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 284 TGQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34589999999999999999997763
No 101
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=56.21 E-value=36 Score=34.97 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
+.+..++.|+.|+.+++..+---| ..||-. ..-..+++++|.++|+++|++|+..| .|.=
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-----------~ipe~~-------~~~~~~~~~~l~~~a~~~~~~v~~Di-sp~~ 71 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-----------HIPEDD-------PEDYLERLKELLKLAKELGMEVIADI-SPKV 71 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------------------------HHHHHHHHHHHHHHCT-EEEEEE--CCH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-----------CcCCCC-------HHHHHHHHHHHHHHHHHCCCEEEEEC-CHHH
Confidence 788999999999999998654432 112211 11257899999999999999999999 4543
No 102
>PRK09265 aminotransferase AlaT; Validated
Probab=56.17 E-value=62 Score=33.05 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..++.+++++|++.|+++|+-||-
T Consensus 182 G~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 182 GAVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999999999997763
No 103
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=55.75 E-value=50 Score=33.38 Aligned_cols=24 Identities=33% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 180 GAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 457999999999999999999775
No 104
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=55.37 E-value=20 Score=37.17 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEe---------------------ecCCCCCCCCCCCCCccc---------cC-CCCCCCC
Q 014971 213 DVIKQIIESMSYAKLNVLHWHI---------------------IDEQSFPLEVPTYPNLWK---------GA-YSKWERY 261 (415)
Q Consensus 213 ~~lk~~id~ma~~K~N~lh~hl---------------------tD~~~~~~e~~~~P~l~~---------g~-~~~~~~Y 261 (415)
+.|.-.|+.+|.-|.|.|-=|. --+++|+++++....|.. +. ..-+.+|
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVy 216 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVY 216 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence 5677778888888888776542 113445554433332220 00 1235689
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
|.+-+++|.+.|+++||.||-. +.-||+-
T Consensus 217 s~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 9999999999999999999875 3667654
No 105
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=55.36 E-value=1.1e+02 Score=30.59 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
+|.+-+.++++++.+..+++-.=.+++.++ | .+.+...+ + ....|. |.+++++..+++|++|++-++ |
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~---~~~~~~f~---~-d~~~FP--dp~~~i~~l~~~g~k~~~~~~-P 86 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIH--Y---MDSYRLFT---W-DPYRFP--EPKKLIDELHKRNVKLVTIVD-P 86 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChh--h---hCCCCcee---e-chhcCC--CHHHHHHHHHHCCCEEEEEee-c
Confidence 466788999999999999998666666322 1 01111111 0 111232 678999999999999998763 3
Q ss_pred ccc-----chhhhcCC-C-CCC--CC---------CCCCcCCCCChhHHHHHHHHHHHHh
Q 014971 288 GHA-----ESWGAGYP-N-LWP--SP---------SCREPLDVSKNFTFEVISGILSDLR 329 (415)
Q Consensus 288 GH~-----~~~~~~~p-~-l~~--~~---------~~~~~ld~~~~~t~~fl~~l~~E~~ 329 (415)
+-. ..+..+.. . ++. ++ .....+|.+||++.+...+.++++.
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 87 GIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred cccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 211 11111100 0 000 00 0112589999999999999999886
No 106
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=55.25 E-value=2e+02 Score=28.71 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHH-HHHHHHHHh--hcCCC-
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEV-ISGILSDLR--KIFPF- 334 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~f-l~~l~~E~~--~lFp~- 334 (415)
....+++++++-++++++||+++- |...+ -.|+-.+|++.+. ++.|..++. +....
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls~------Hp~y~--------------inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~ 145 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLSF------HPDQF--------------VVLNSPKPEVVENSIKDLEYHAKLLDLMGID 145 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeec------cChhh--------------hcCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 347899999999999999997643 32211 1233345666654 555555542 22322
Q ss_pred ----CeEEeCC
Q 014971 335 ----ELFHLGG 341 (415)
Q Consensus 335 ----~~~HiGg 341 (415)
=.||.||
T Consensus 146 ~~~~vViHpG~ 156 (303)
T PRK02308 146 DSSKINIHVGG 156 (303)
T ss_pred CCCEEEECCCc
Confidence 3589999
No 107
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.09 E-value=25 Score=33.26 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCC---CCCCCCCCccccCCCCCCCCCHHHH-----------------HHHH
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP---LEVPTYPNLWKGAYSKWERYTVEDA-----------------HEIV 270 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~---~e~~~~P~l~~g~~~~~~~YT~~ei-----------------~~lv 270 (415)
+.+...++.+.+..-++..+-+-++...... --.+.||++..|+ +..+|.+|+ .+++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v~ 94 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPELA 94 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 7789999999999999999999886654321 1124678776443 334444443 4788
Q ss_pred HHHHHcCCEEEEeecCCcccchhh-hcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCC-CeEEeCCCC
Q 014971 271 SFAKMRGINVMAEVDVPGHAESWG-AGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF-ELFHLGGDE 343 (415)
Q Consensus 271 ~yA~~rgI~vIPEiD~PGH~~~~~-~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~-~~~HiGgDE 343 (415)
++|+++||-++|-+=||....... .+..-+ -+=|.+.-. =-+.++.+...||. +++=.||=.
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~v--------KlFPA~~~G---G~~yikal~~plp~i~~~ptGGV~ 158 (204)
T TIGR01182 95 KHAQDHGIPIIPGVATPSEIMLALELGITAL--------KLFPAEVSG---GVKMLKALAGPFPQVRFCPTGGIN 158 (204)
T ss_pred HHHHHcCCcEECCCCCHHHHHHHHHCCCCEE--------EECCchhcC---CHHHHHHHhccCCCCcEEecCCCC
Confidence 999999999999999998765432 222111 011111110 01345556667775 777777743
No 108
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=54.91 E-value=52 Score=35.16 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..||.+++++|++.|++++|-||-
T Consensus 213 G~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 213 GTMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999997653
No 109
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=54.90 E-value=72 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 260 RYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 260 ~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
.++.++.++|.+||+++||..+-..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stp 76 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTP 76 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECC
Confidence 4899999999999999999887653
No 110
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.85 E-value=24 Score=33.45 Aligned_cols=118 Identities=11% Similarity=0.072 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCC---CCCCCC---CCccccCCCCCCCCCHHHHH-----------------
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP---LEVPTY---PNLWKGAYSKWERYTVEDAH----------------- 267 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~---~e~~~~---P~l~~g~~~~~~~YT~~ei~----------------- 267 (415)
+.+...++.+.|..-++..+-+-++...... --.+.| |++..|+ +...|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~FivsP~~~~ 99 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQFIVSPSFNR 99 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 7899999999999999999999887443221 001234 4565453 4566777765
Q ss_pred HHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCC-CCeEEeCCC
Q 014971 268 EIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGD 342 (415)
Q Consensus 268 ~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp-~~~~HiGgD 342 (415)
+++++|+++||-+||-.-+|.-.......-.++. -+-|...-..++ ++.+...|| -+++=+||=
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~v-------klFPa~~~G~~~----ik~l~~~~p~ip~~atGGI 164 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIV-------KLFPGSTLGPSF----IKAIKGPLPQVNVMVTGGV 164 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEE-------EECCcccCCHHH----HHHHhhhCCCCEEEEECCC
Confidence 7899999999999999988876544332212210 011222222233 455566777 588888884
No 111
>PRK09275 aspartate aminotransferase; Provisional
Probab=54.81 E-value=59 Score=35.21 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMR--GINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~r--gI~vI 281 (415)
.+..||++++++|++.|+++ ++-||
T Consensus 254 TG~v~s~e~l~~I~~ia~~~~~~l~II 280 (527)
T PRK09275 254 PSVAMSDESLEKIADIVNEKRPDLMII 280 (527)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 34579999999999999754 77665
No 112
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.35 E-value=9.8 Score=37.93 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcccceeecCC-CCCCCHHHHHHHHHHHHhCCCcEE
Q 014971 161 ALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTS-RHYLPVDVIKQIIESMSYAKLNVL 230 (415)
Q Consensus 161 ~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~~lD~a-R~~~~~~~lk~~id~ma~~K~N~l 230 (415)
.+.-+++|.+++..-.. +.+..-.++++| .|+++|.--=.+ +.+++.+.++++++..+..+++++
T Consensus 12 ~~~~~~~lk~~id~ma~---~k~N~l~lhl~D--~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vI 77 (301)
T cd06565 12 AVPKVSYLKKLLRLLAL---LGANGLLLYYED--TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVI 77 (301)
T ss_pred CCCCHHHHHHHHHHHHH---cCCCEEEEEEec--ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 66677888888864211 112222467889 688888643223 789999999999999999999875
No 113
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.58 E-value=2.1e+02 Score=27.33 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 214 ~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+.+.++.++..++..+.+...... .++ ...++.+++++-+.++++||+|+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~-------~~~----------~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPH-------AFA----------PDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcc-------ccc----------cccCchHHHHHHHHHHHcCCeEE
Confidence 5788999999999998887321110 010 11366789999999999999874
No 114
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=53.20 E-value=52 Score=33.21 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 178 G~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 178 GAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CccCCHHHHHHHHHHHHHcCEEEE
Confidence 457999999999999999998766
No 115
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=52.92 E-value=12 Score=34.46 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCC---CCCCCCCCccccC--C------------CCCCCCCHHHHHHHHHHH
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP---LEVPTYPNLWKGA--Y------------SKWERYTVEDAHEIVSFA 273 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~---~e~~~~P~l~~g~--~------------~~~~~YT~~ei~~lv~yA 273 (415)
+.+...++++.+...++..+.+.+++....+ .--+.||++..|+ - ..+..-+.....+++++|
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~ 93 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAA 93 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 4788899999999999999999887553211 1113455442111 0 011112222346799999
Q ss_pred HHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCC-CCeEEeCCC
Q 014971 274 KMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGD 342 (415)
Q Consensus 274 ~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp-~~~~HiGgD 342 (415)
+++|+.++|++.+|.++......-.++. .+.|..+...+ .++++...|| -+.+=+||=
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~Gad~i-------~~~p~~~~g~~----~~~~l~~~~~~~p~~a~GGI 152 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALELGADIV-------KLFPAEAVGPA----YIKALKGPFPQVRFMPTGGV 152 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHCCCCEE-------EEcCCcccCHH----HHHHHHhhCCCCeEEEeCCC
Confidence 9999999999998877654443222221 12344443344 4455566676 588888874
No 116
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=52.82 E-value=43 Score=33.92 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||.+++++|++.|+++++-||
T Consensus 178 TG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 178 TTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3557999999999999999998766
No 117
>PRK07324 transaminase; Validated
Probab=52.66 E-value=1.5e+02 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..++++++++|++.|+++|+-||-.
T Consensus 167 G~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 167 GALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999977643
No 118
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=52.65 E-value=39 Score=34.00 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
+|.+...+.++.|...++|++..++- |.+- |-..|.|.-.+ ..|++.+++.|+++|+-||--+----|
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~----W~~h-----e~~~g~~df~g---~~dl~~f~~~a~~~gl~vilrpGpyi~ 88 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVP----WNLH-----EPEEGQFDFTG---NRDLDRFLDLAQENGLYVILRPGPYIC 88 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE------HHHH-----SSBTTB---SG---GG-HHHHHHHHHHTT-EEEEEEES---
T ss_pred CChhHHHHHHHHHHhCCcceEEEecc----cccc-----CCCCCcccccc---hhhHHHHHHHHHHcCcEEEecccceec
Confidence 46888899999999999999998862 3221 11234332221 369999999999999998876543345
Q ss_pred cc
Q 014971 290 AE 291 (415)
Q Consensus 290 ~~ 291 (415)
++
T Consensus 89 aE 90 (319)
T PF01301_consen 89 AE 90 (319)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 119
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=52.46 E-value=50 Score=34.35 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC---CCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQ---SFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~---~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
+.-|.+-+|.+...+++.+++-..-.. --++....|-++ ....=|.+|++++++-|.+|||.||..+ ..-
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~i------d~~~Gt~~d~~~li~~~H~~gi~vi~D~-V~N 100 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKV------DPHFGTEEDFKELVEEAHKRGIKVILDL-VFN 100 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhc------CcccCCHHHHHHHHHHHHHCCCEEEEEe-ccC
Confidence 455668899999999999998543211 001111111111 1123399999999999999999999998 466
Q ss_pred ccc
Q 014971 289 HAE 291 (415)
Q Consensus 289 H~~ 291 (415)
|+.
T Consensus 101 H~s 103 (505)
T COG0366 101 HTS 103 (505)
T ss_pred cCC
Confidence 665
No 120
>PRK07683 aminotransferase A; Validated
Probab=52.36 E-value=39 Score=34.35 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii 198 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVL 198 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999998776
No 121
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=52.01 E-value=73 Score=30.16 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCC--CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAY--SKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~--~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+.+.++++.+.++.++.. ++|+.--. ++-..+|..|.. .| ......++++++++.++++++|+.++
T Consensus 142 d~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~-~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 142 LSRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGK-TWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCC-cCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 3578899999999987655 55553211 111122222211 11 12335699999999999999999985
No 122
>PRK06290 aspartate aminotransferase; Provisional
Probab=51.75 E-value=56 Score=33.75 Aligned_cols=25 Identities=36% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||.+++++|++.|+++|+-||
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3557999999999999999998665
No 123
>PRK08363 alanine aminotransferase; Validated
Probab=51.70 E-value=59 Score=33.10 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++|+-||
T Consensus 180 G~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 180 GALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEE
Confidence 456899999999999999998765
No 124
>PRK01060 endonuclease IV; Provisional
Probab=51.21 E-value=65 Score=31.03 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=44.5
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014971 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (415)
Q Consensus 200 G~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~ 279 (415)
|+|..+.+. +.+.|+.++..++..+.+-+.....| ....+|.++++++-+.++++|++
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~----------------~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQW----------------KRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCC----------------cCCCCCHHHHHHHHHHHHHcCCC
Confidence 555555444 78999999999999999866422221 12347999999999999999999
Q ss_pred E
Q 014971 280 V 280 (415)
Q Consensus 280 v 280 (415)
+
T Consensus 63 ~ 63 (281)
T PRK01060 63 P 63 (281)
T ss_pred C
Confidence 4
No 125
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=50.89 E-value=54 Score=34.95 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..|+.+++++|++.|+++++-||
T Consensus 295 G~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 295 GALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 457999999999999999998765
No 126
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=50.83 E-value=46 Score=33.81 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||++++++|++.|+++++-||
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 179 GAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEE
Confidence 457999999999999999998766
No 127
>PRK05942 aspartate aminotransferase; Provisional
Probab=50.67 E-value=50 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..+|.+++++|++.|+++|+-||
T Consensus 184 G~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 184 TATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999999876
No 128
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=49.85 E-value=36 Score=33.03 Aligned_cols=79 Identities=15% Similarity=0.362 Sum_probs=52.5
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCc--cccCCCCCCCCCHHHHHHHHH
Q 014971 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL--WKGAYSKWERYTVEDAHEIVS 271 (415)
Q Consensus 194 P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l--~~g~~~~~~~YT~~ei~~lv~ 271 (415)
|++.+ |++.--- .+.+-+.++++++.+..+++..=.+++.++ |--. +-.. + + ....| .+.+++++
T Consensus 7 P~wa~-G~~~~~~-~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~~---~~~f~~~---~-d~~~F--pdp~~~i~ 73 (265)
T cd06589 7 PKWAF-GYWLSRY-GYGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTDG---YGDFTFD---W-DAGKF--PNPKSMID 73 (265)
T ss_pred cHHHH-HHHHhcC-CCCCHHHHHHHHHHHHHcCCCccEEEECcc--cccC---Cceeeee---c-ChhhC--CCHHHHHH
Confidence 45544 6664332 267899999999999999999777777544 2211 1111 1 0 11122 25789999
Q ss_pred HHHHcCCEEEEeec
Q 014971 272 FAKMRGINVMAEVD 285 (415)
Q Consensus 272 yA~~rgI~vIPEiD 285 (415)
+.+++|++|++-++
T Consensus 74 ~l~~~g~~~~~~~~ 87 (265)
T cd06589 74 ELHDNGVKLVLWID 87 (265)
T ss_pred HHHHCCCEEEEEeC
Confidence 99999999999884
No 129
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=49.17 E-value=92 Score=32.76 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=63.1
Q ss_pred HHHHHHhhcccCCCCceeEeeccceEEecCCCC----cccc------eeecCCCCC-CCHHHHHHHHHHHHhCCCcEEEE
Q 014971 164 GLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRF----AFRG------LLIDTSRHY-LPVDVIKQIIESMSYAKLNVLHW 232 (415)
Q Consensus 164 gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f----~~RG------~~lD~aR~~-~~~~~lk~~id~ma~~K~N~lh~ 232 (415)
|-+||.-.+.. + +..+-+|.+. +|.| .||+ ++++.+-+| ++++.+..-+......+.++=-+
T Consensus 158 ane~l~fcLad-p-gdafLvPtPy-----Y~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGv 230 (471)
T KOG0256|consen 158 ANETLMFCLAD-P-GDAFLVPTPY-----YPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGV 230 (471)
T ss_pred hhHHHHHHhcC-C-CceeeecCCC-----CCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEE
Confidence 45555555543 2 2334566443 4444 2443 466777776 67888888888777777777666
Q ss_pred EeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 233 HIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 233 hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
-++.- +-| -+..||++++..++.+|.+++|.||-.
T Consensus 231 litNP--------sNP--------LG~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 231 LITNP--------SNP--------LGTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred EEeCC--------CCC--------CCCccCHHHHHHHHHHHhhcceEEEee
Confidence 55421 112 245799999999999999999997753
No 130
>PTZ00376 aspartate aminotransferase; Provisional
Probab=48.83 E-value=1.3e+02 Score=30.78 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 190 GVDPTEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE
Confidence 457999999999999999999766
No 131
>PRK06108 aspartate aminotransferase; Provisional
Probab=48.75 E-value=56 Score=32.73 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..+|.+++++|++.|+++|+-||
T Consensus 172 G~~~~~~~~~~l~~~~~~~~~~li 195 (382)
T PRK06108 172 GWTASRDDLRAILAHCRRHGLWIV 195 (382)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEE
Confidence 346899999999999999999776
No 132
>PLN02656 tyrosine transaminase
Probab=48.40 E-value=54 Score=33.66 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++|+-||
T Consensus 183 G~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 183 GNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999998776
No 133
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=48.37 E-value=21 Score=36.33 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCE-EEEeecCCccc-chhhhcCCCCC-------CCCCCCCcCCCCChhHHHHHHHHHHHHhhcCC
Q 014971 267 HEIVSFAKMRGIN-VMAEVDVPGHA-ESWGAGYPNLW-------PSPSCREPLDVSKNFTFEVISGILSDLRKIFP 333 (415)
Q Consensus 267 ~~lv~yA~~rgI~-vIPEiD~PGH~-~~~~~~~p~l~-------~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp 333 (415)
+.|++.-++.||+ |.|- ..||. .++.+.+|+-. ..-.|..-|||.+|---++-+..++|..++|.
T Consensus 98 ~kIl~RmreLGm~PVLPa--F~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG 171 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPA--FAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG 171 (333)
T ss_dssp HHHHHHHHHHT-EEEEE----S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCCC--cCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC
Confidence 5789999999998 6676 47998 56777888752 12234457999999888888999999999997
No 134
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=48.13 E-value=93 Score=33.67 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMR--GINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~r--gI~vI 281 (415)
.+..||.+++++|++.|+++ ++-||
T Consensus 253 TG~vls~e~l~~I~~ia~~~~~~l~II 279 (521)
T TIGR03801 253 PSVAMSDESIEKIVDIVANDRPDLMIL 279 (521)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 34679999999999999986 77554
No 135
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=48.03 E-value=1.1e+02 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
.+..||.+.-++|++.|+++++-|| |=|.-|
T Consensus 240 tG~tms~~rR~~Ll~lA~~~~~~II-EDD~y~ 270 (459)
T COG1167 240 TGVTMSLERRKALLALAEKYDVLII-EDDYYG 270 (459)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEE-eeCcch
Confidence 4567999999999999999999887 334443
No 136
>PRK07568 aspartate aminotransferase; Provisional
Probab=47.19 E-value=1.3e+02 Score=30.32 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++|+-||
T Consensus 176 G~~~~~~~~~~i~~~~~~~~~~ii 199 (397)
T PRK07568 176 GVVYTKEELEMLAEIAKKHDLFLI 199 (397)
T ss_pred CccCCHHHHHHHHHHHHHCCcEEE
Confidence 457899999999999999998776
No 137
>PLN02672 methionine S-methyltransferase
Probab=46.73 E-value=64 Score=38.03 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=36.9
Q ss_pred HHhCCCcEEEEEeecCCCCCCCCCCCC---------Ccc-ccC--CCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 222 MSYAKLNVLHWHIIDEQSFPLEVPTYP---------NLW-KGA--YSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 222 ma~~K~N~lh~hltD~~~~~~e~~~~P---------~l~-~g~--~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+...+.++..+-+.++.+|.+..+.+. .+. ..+ ...+..||.+++++|++.|+++|+.||
T Consensus 795 a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VI 866 (1082)
T PLN02672 795 AKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVI 866 (1082)
T ss_pred HHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEE
Confidence 445566666666644456665421111 111 111 123457999999999999999999876
No 138
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=46.60 E-value=49 Score=33.76 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 014971 205 TSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG 277 (415)
Q Consensus 205 ~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rg 277 (415)
.+|..|.++.++++...++..|+++|---+ - . .| |..+|+..|++||++.|
T Consensus 234 ~G~~dYdv~kvle~aE~i~~a~idvlIaPv--------~---l----PG-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 234 AGRKDYDVKKVLEVAEYIANAGIDVLIAPV--------W---L----PG-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred cCccccCHHHHHHHHHHHHhCCCCEEEeee--------e---c----CC-------cChHHHHHHHHHHHHhC
Confidence 478899999999999999999999986532 1 1 22 56789999999999998
No 139
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.54 E-value=71 Score=30.60 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
.++.+++.|+..+..+...+.+|.... ++.- ...+.+ .-..+-+++|.++|+++||++.-|--.|
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~---~~~~~~--------~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT---PPNVIW--------GRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC---CHHHHH--------HHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 367899999999999999999986432 1110 000000 0133568999999999999999995333
No 140
>PRK10658 putative alpha-glucosidase; Provisional
Probab=46.05 E-value=1.2e+02 Score=33.95 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=73.8
Q ss_pred CCCcccceeecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHH
Q 014971 194 PRFAFRGLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSF 272 (415)
Q Consensus 194 P~f~~RG~~lD~aR~-~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~y 272 (415)
|++.+ |+++-.+.. -++-+.+.++++.|...++-.=.+|+..+ |--+. .+...+ + ....|. |.+++++.
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~--w~~~~-~~~~f~---w-d~~~FP--dp~~mi~~ 333 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCF--WMKEF-QWCDFE---W-DPRTFP--DPEGMLKR 333 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchh--hhcCC-ceeeeE---E-ChhhCC--CHHHHHHH
Confidence 67766 777765332 25677899999999999988655565321 21000 011111 0 011222 56789999
Q ss_pred HHHcCCEEEEeecCCc----cc---chhhhcC----CC-------CCCCCCCCCcCCCCChhHHHHHHHHHHHHhhc
Q 014971 273 AKMRGINVMAEVDVPG----HA---ESWGAGY----PN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRKI 331 (415)
Q Consensus 273 A~~rgI~vIPEiD~PG----H~---~~~~~~~----p~-------l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~l 331 (415)
-+++|++++.-|+ |+ +. ++..++| ++ .|+. ....+|.+||++.+...+.++++.++
T Consensus 334 L~~~G~k~~~~i~-P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g--~~~~~Dftnp~ar~W~~~~~~~l~d~ 407 (665)
T PRK10658 334 LKAKGLKICVWIN-PYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQP--GMAIVDFTNPDACKWYADKLKGLLDM 407 (665)
T ss_pred HHHCCCEEEEecc-CCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCC--CceeecCCCHHHHHHHHHHHHHHHhc
Confidence 9999999998775 32 11 0111111 10 0111 12358999999999999999988764
No 141
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=45.65 E-value=94 Score=31.16 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..||.+++++|++.|+++|+-||
T Consensus 154 tG~~~~~~~~~~l~~~a~~~~~~ii 178 (354)
T PRK06358 154 TGQLISKEEMKKILDKCEKRNIYLI 178 (354)
T ss_pred CCCccCHHHHHHHHHHHHhcCCEEE
Confidence 3457999999999999999999776
No 142
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=45.51 E-value=43 Score=35.38 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..|+.+++++|++.|+++++-||
T Consensus 205 G~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 205 GTTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEE
Confidence 457999999999999999999876
No 143
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=45.34 E-value=47 Score=31.72 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=53.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHH
Q 014971 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKM 275 (415)
Q Consensus 196 f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~ 275 (415)
|+.=|+++|+...- +.+-+.++++....+.-+.+-+-. . -..++|++|+.++.+|+..
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv--------------N-------l~~YLt~eei~el~~~i~~ 189 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI--------------N-------SGAFLTKDELAELQKFISY 189 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE--------------c-------HHHhCCHHHHHHHHHHHHH
Confidence 56789999999886 899999999998888777666533 1 2457899999999999999
Q ss_pred cCCEEEE
Q 014971 276 RGINVMA 282 (415)
Q Consensus 276 rgI~vIP 282 (415)
..+.|+-
T Consensus 190 ~~~~vll 196 (216)
T TIGR01866 190 TKLTVLF 196 (216)
T ss_pred hcccEEE
Confidence 9998763
No 144
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=44.08 E-value=1.8e+02 Score=30.59 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=39.8
Q ss_pred cCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 204 DTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 204 D~aR~~-~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
|...+| +.++.+++.++....-+.++=-+.++ + +.-| .+..|+++++++|++.|++++|-||
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~-n-------P~NP--------tG~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLIT-N-------PSNP--------LGATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEe-C-------CCCC--------cCcccCHHHHHHHHHHHHHCCCEEE
Confidence 434455 56777877777655444443222222 1 1112 2457999999999999999999877
No 145
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=43.83 E-value=2.4e+02 Score=25.61 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 209 YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 209 ~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~Y-T~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
=++.+.-.+.++.|...++|+|-+--+-..++.. ||. .+ +...-.+ ..+=+..+++.|.+.|++|+.-+..
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps--~~-~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPS--KL-SPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCc--cc-cCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4678889999999999999998876554443322 221 00 0011111 3456889999999999999988743
No 146
>PLN03059 beta-galactosidase; Provisional
Probab=42.55 E-value=4.7e+02 Score=30.16 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=57.3
Q ss_pred ceEEecCCCCcccceeecCCCCC--CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHH
Q 014971 187 PWYIQDKPRFAFRGLLIDTSRHY--LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVE 264 (415)
Q Consensus 187 ~~~I~D~P~f~~RG~~lD~aR~~--~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ 264 (415)
.+.|...|.+-+-|-| || +|.+.-.+.|..|.+.++|++..++- |.+- -| ..|.|.-. ...
T Consensus 36 ~f~idG~p~~i~sG~i-----HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~H---Ep--~~G~~dF~---G~~ 98 (840)
T PLN03059 36 AFIINGQRRILISGSI-----HYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGH---EP--SPGNYYFE---DRY 98 (840)
T ss_pred EEEECCEEEEEEEeCc-----ccCcCCHHHHHHHHHHHHHcCCCeEEEEec----cccc---CC--CCCeeecc---chH
Confidence 3456666666555554 44 57899999999999999999996652 3332 12 23544333 367
Q ss_pred HHHHHHHHHHHcCCEEEEee
Q 014971 265 DAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 265 ei~~lv~yA~~rgI~vIPEi 284 (415)
|+..+++.|++.|+-||--+
T Consensus 99 DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHcCCEEEecC
Confidence 99999999999999988653
No 147
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=42.49 E-value=1.9e+02 Score=32.61 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=66.1
Q ss_pred HHHHHhCCCcEEEEEeecCCCCCCC--CCCCCCc---c----------ccCCCCCC--CCCHHHHHHHHHHHHHcCCEEE
Q 014971 219 IESMSYAKLNVLHWHIIDEQSFPLE--VPTYPNL---W----------KGAYSKWE--RYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 219 id~ma~~K~N~lh~hltD~~~~~~e--~~~~P~l---~----------~g~~~~~~--~YT~~ei~~lv~yA~~rgI~vI 281 (415)
|+.+..+++|.+++-..-+ |-.+ .+ -+.+ | .|.|+.+. .--..|+|.+|+-..++||+||
T Consensus 206 i~yLk~LGvtaVeLLPV~~--~~~~~~l~-~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VI 282 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFD--FYDEPHLD-KSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVI 282 (697)
T ss_pred HHHHHHhCCceEEEecceE--Eecccccc-ccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEE
Confidence 9999999999888743211 0000 00 0111 1 12232221 1134599999999999999999
Q ss_pred EeecCCcccch---------hhhcCCCC----------CCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 282 AEVDVPGHAES---------WGAGYPNL----------WPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 282 PEiD~PGH~~~---------~~~~~p~l----------~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
-.+ +.-|+.. +..--|.. .....|.++++..+|-+.+++-+-++-..+
T Consensus 283 LDV-VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~ 349 (697)
T COG1523 283 LDV-VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVE 349 (697)
T ss_pred EEE-eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHH
Confidence 999 8889852 11111111 112347789999999999988887665543
No 148
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.40 E-value=3.1e+02 Score=26.14 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 213 ~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
-.+.+.++.++.+++..+-+.+.+.. +.. ....++.++++++.+.++++||+|. .+.+++|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~---------~~~------~~~~~~~~~~~~l~~~l~~~Gl~i~-~~~~~~~ 76 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESD---------ERL------ARLDWSKEERLSLVKAIYETGVRIP-SMCLSGH 76 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcc---------ccc------ccccCCHHHHHHHHHHHHHcCCCce-EEecccc
Confidence 36789999999999999998753211 011 1123678899999999999999876 3434454
No 149
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=42.22 E-value=68 Score=30.87 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCC
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFE 335 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~ 335 (415)
.+.|.-++...++++|+++||+|- ||+-.|....|.... +...++..+.+.+-+++++.-|.++
T Consensus 10 ~G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~--------~~~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 10 RGQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF--------NLSKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CCccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh--------cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 467889999999999999999994 787666544453211 1114455666777777776666543
No 150
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=42.12 E-value=66 Score=32.43 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCC-CCCCC-CCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSF-PLEVP-TYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~-~~e~~-~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH 289 (415)
...+-+.+...+.+|||.|.+-+.||-|- ++.++ .+|+-+ ++ .=.-.||+-++.-|++.||-+|--|=++--
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~-~s-----v~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYT-KS-----VNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhh-hc-----cccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 44566788889999999999999998541 11110 111110 11 112458999999999999999888754432
Q ss_pred cchh----------hhcCCC-------CCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 290 AESW----------GAGYPN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 290 ~~~~----------~~~~p~-------l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
+--+ ..+.|. |+.......=.|+-++.+.+.=-.+-+|.++
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~ 207 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAK 207 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHH
Confidence 2110 001111 0000001112667777777777777777765
No 151
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.05 E-value=57 Score=31.77 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 213 ~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
..+.++++.+..++++.+- ++|. .-..+.++..++++.|+++|.+|+||+
T Consensus 84 ~~~~~yl~~~k~lGf~~IE--iSdG--------------------ti~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIE--ISDG--------------------TIDLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEE--E--S--------------------SS---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred ChHHHHHHHHHHcCCCEEE--ecCC--------------------ceeCCHHHHHHHHHHHHHCCCEEeecc
Confidence 3567777777778877543 3332 123578999999999999999999999
No 152
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=41.58 E-value=78 Score=32.35 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..++.+++++|++.|+++|+-||-.
T Consensus 183 G~~~~~~~~~~i~~~a~~~~~~ii~D 208 (403)
T TIGR01265 183 GSVFSRDHLQKIAEVARKLGIPIIAD 208 (403)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999877643
No 153
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=41.58 E-value=13 Score=37.51 Aligned_cols=128 Identities=13% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCeEEEEecCCCcccceeEEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCC-cccceeecCCCCCC
Q 014971 132 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRF-AFRGLLIDTSRHYL 210 (415)
Q Consensus 132 ~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f-~~RG~~lD~aR~~~ 210 (415)
.+.|...++... |.++-.+..++||..--|.--- .++..+.+.+|- +|.| .|-++.||- -+|+
T Consensus 88 ~~~ygwnit~~N-------IalTnGSQs~fFYlfNlF~G~~-sdG~~k~illPL-------aPeYiGY~d~~l~~-d~fV 151 (417)
T COG3977 88 RREYGWNITAQN-------IALTNGSQSAFFYLFNLFAGRR-SDGTEKKILLPL-------APEYIGYADAGLEE-DLFV 151 (417)
T ss_pred HHHhCCCCccce-------eeecCCccchHHHHHHHhcCcc-CCCcceeEeecc-------ChhhccccccccCc-ccee
Confidence 588999998875 8999999999999987664432 222233334443 3444 244555443 2344
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 211 PVDVIKQIIESMSYAK--LNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K--~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..-=.++++ -..+| ...=|+|++++-|--.- +-|- ...+.++|.+|++.|.+.|+++||-+|-.
T Consensus 152 s~kP~iel~~-~g~FKY~vDF~~l~i~e~~g~ic~--SRPt-----NPTGNVlTdeE~~kldalA~~~giPliID 218 (417)
T COG3977 152 SAKPNIELLP-AGQFKYHVDFEHLHIGESTGAICV--SRPT-----NPTGNVLTDEELAKLDALARQHGIPLIID 218 (417)
T ss_pred eccCCccccc-ccceeeccCHHHcccccccceEEe--cCCC-----CCCCCcccHHHHHHHHHHhhhcCCcEEEe
Confidence 4222122222 11222 22234444433221110 1111 12457899999999999999999988754
No 154
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.48 E-value=1.1e+02 Score=30.79 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
.|.+-+.++++++.+...++..=.+++.++ |- ..+-.++ + ....|. |.+.+++.-+++|++|++-++ |
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~FP--dp~~mi~~L~~~G~k~~~~~~-P 86 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT---W-DKKKFP--DPEKMQEKLASKGRKLVTIVD-P 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE---e-CcccCC--CHHHHHHHHHHCCCEEEEEec-C
Confidence 466899999999999999998766666322 10 1111111 0 112333 678899999999999999886 3
Q ss_pred cccc-----hhh----hcC----CC-------CCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 288 GHAE-----SWG----AGY----PN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 288 GH~~-----~~~----~~~----p~-------l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
+-.. ... ++| ++ .++ .....+|.+||++.+...+.++++..
T Consensus 87 ~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 87 HIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWP--GSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred ceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECC--CCcCCccCCChhHHHHHHHHHHHHhh
Confidence 3211 000 000 00 011 11236899999999999999998864
No 155
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=41.09 E-value=41 Score=32.97 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEe
Q 014971 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (415)
Q Consensus 260 ~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~Hi 339 (415)
.++.+++++|+++|+++|++++-|+..--+..-.++.-+.+. -+|-.|=.++++--+-..++++..|...+-|
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------GINnRdL~tf~vdl~~t~~la~~~p~~~~~I 211 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------GINNRDLTTLEVDLETTEKLAPLIPKDVILI 211 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------EEeCCCcchheecHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999955544433333323221 1233344455555555777888888765555
Q ss_pred C
Q 014971 340 G 340 (415)
Q Consensus 340 G 340 (415)
.
T Consensus 212 s 212 (254)
T COG0134 212 S 212 (254)
T ss_pred e
Confidence 4
No 156
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=40.79 E-value=31 Score=35.62 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE-ee
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA-EV 284 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP-Ei 284 (415)
+..+|++|++.|.+.|+++||+||- ||
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 4589999999999999999999886 55
No 157
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.67 E-value=3.4e+02 Score=26.07 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 213 ~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
..+.+.++.++.+++..+.+.+.+... .+ ....++.++++++.+.++++||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~---------~~------~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDD---------RL------SRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccc---------hh------hccCCCHHHHHHHHHHHHHcCCCce
Confidence 456788899999999988885432110 00 1123689999999999999999886
No 158
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=40.27 E-value=35 Score=29.17 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCcccch
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAES 292 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~ 292 (415)
|.+|++.++++|+++++.|.|- .-||...
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~~ 37 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSWT 37 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTSS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCcc
Confidence 7899999999999999999987 5666543
No 159
>PLN00175 aminotransferase family protein; Provisional
Probab=39.78 E-value=1.1e+02 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..||.+++++|++.|+++++-||
T Consensus 201 G~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 201 GKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEE
Confidence 457999999999999999998766
No 160
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.50 E-value=38 Score=31.99 Aligned_cols=78 Identities=9% Similarity=0.119 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCC---CCCCCCCccccCCCCCCCCCHHHH-----------------HHHH
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL---EVPTYPNLWKGAYSKWERYTVEDA-----------------HEIV 270 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~---e~~~~P~l~~g~~~~~~~YT~~ei-----------------~~lv 270 (415)
+.+...++.+.|..-++..+-+-++..+.... -.+.||++..|+ +..+|.+++ .+++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGA---GTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEee---EeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 78899999999999999999998876543321 024578776553 345566665 4688
Q ss_pred HHHHHcCCEEEEeecCCcccc
Q 014971 271 SFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 271 ~yA~~rgI~vIPEiD~PGH~~ 291 (415)
++|+++||-++|-.=||.-..
T Consensus 91 ~~a~~~~i~~iPG~~TptEi~ 111 (201)
T PRK06015 91 AAANDSDVPLLPGAATPSEVM 111 (201)
T ss_pred HHHHHcCCCEeCCCCCHHHHH
Confidence 999999999999999997653
No 161
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=39.36 E-value=1.2e+02 Score=28.93 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 215 IKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 215 lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+.+.++.++.++++.+.+.+..-+.| ....+|.++++++-+.++++||+|.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSW----------------KGVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCC----------------CCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 44566666666666666654322111 0113566666666666666666543
No 162
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.34 E-value=36 Score=32.29 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCC---CCCCCCCccccCCCCCCCCCHHHH-----------------HHH
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL---EVPTYPNLWKGAYSKWERYTVEDA-----------------HEI 269 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~---e~~~~P~l~~g~~~~~~~YT~~ei-----------------~~l 269 (415)
.+.+...++.+.+...++..+-+-++..++.+. -.+.||++..|+ +...|.+|+ .++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 467889999999999999999998876654332 113577765443 233344443 378
Q ss_pred HHHHHHcCCEEEEeecCCcccc
Q 014971 270 VSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 270 v~yA~~rgI~vIPEiD~PGH~~ 291 (415)
+++|++++|..+|.+-+|.-..
T Consensus 101 i~~a~~~~i~~iPG~~TptEi~ 122 (212)
T PRK05718 101 LKAAQEGPIPLIPGVSTPSELM 122 (212)
T ss_pred HHHHHHcCCCEeCCCCCHHHHH
Confidence 9999999999999999997543
No 163
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=39.33 E-value=2.4e+02 Score=29.71 Aligned_cols=62 Identities=6% Similarity=-0.021 Sum_probs=47.3
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014971 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (415)
Q Consensus 200 G~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~ 279 (415)
|.|+-++. -+.+.+......+.|.|++-+..-++|+- ..++.++++++.+.++++||.
T Consensus 134 GaHvSiaG------G~~~a~~~a~~~g~~afqiF~~npr~w~~----------------~~~~~~~~~~f~~~~~~~gi~ 191 (413)
T PTZ00372 134 GAHVSASG------GVDNSPINAYNIAGQAFALFLKNQRTWNS----------------PPLSDETIDKFKENCKKYNYD 191 (413)
T ss_pred EEEEeccc------cHHHHHHHHHHcCCCEEEEEcCCCccCCC----------------CCCCHHHHHHHHHHHHHcCCC
Confidence 45555543 35667888899999999998876666643 236899999999999999998
Q ss_pred EEEe
Q 014971 280 VMAE 283 (415)
Q Consensus 280 vIPE 283 (415)
+.|-
T Consensus 192 ~~~i 195 (413)
T PTZ00372 192 PKFI 195 (413)
T ss_pred cceE
Confidence 5543
No 164
>PRK10626 hypothetical protein; Provisional
Probab=38.81 E-value=1.2e+02 Score=29.43 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhcC-C--CccccCCCCCceeecccEEEEcCCeEEeCCCeEEEECCCC-chHHHHHHHHHHHHHHHh
Q 014971 12 LKVIIITALLIIFTSSL-S--VSTDVDDSLAYIWPLPAQFSSGNDTLSVDPALCLSVSGKG-SGLKIVEEAFERYKAIIF 87 (415)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~P~P~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~l~~a~~~~~~~~~ 87 (415)
||.++++++|+++.++. + .|...-.....|-|.=.+|...+|.+.++++=.+.+++.. +-.+.=+.++.+|...+.
T Consensus 2 mrk~~l~~~L~l~s~~a~A~~qC~V~l~~DV~Itpq~v~V~~~sg~l~I~~dg~L~inGk~v~L~~~Qqq~~~~Yq~~lr 81 (239)
T PRK10626 2 MRKMLLAALLSLTAMQAQADYQCSVTPQDDVIISPQTVQVVGASGNLVISPDGNVMRNGKQLSLNAAQRQQAKDYQAALR 81 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCeEEcCCeEEEEecCCceEEcCCCCEEECCEEecCCHHHHHHHHHHHHHHH
Confidence 56667766665444432 1 2333323333444444445666788999887667776651 112234567788887766
Q ss_pred hhh
Q 014971 88 EHE 90 (415)
Q Consensus 88 ~~~ 90 (415)
...
T Consensus 82 ~~l 84 (239)
T PRK10626 82 QDL 84 (239)
T ss_pred HHC
Confidence 554
No 165
>PRK07550 hypothetical protein; Provisional
Probab=38.00 E-value=1.8e+02 Score=29.40 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++|+-||
T Consensus 177 G~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 177 GVVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred CcccCHHHHHHHHHHHHHcCeEEE
Confidence 446899999999999999998775
No 166
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=37.43 E-value=41 Score=32.81 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCCCeEEe
Q 014971 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (415)
Q Consensus 260 ~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~~~~Hi 339 (415)
.++.+++++++++|...|++++-|+-...-.+-.+..-+.+- -+|-.|-.|+++--+...++.+..|...+=|
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii-------GINnRdL~t~~vd~~~~~~L~~~ip~~~~~I 206 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEII-------GINTRDLDTFQIHQNLVEEVAAFLPPNIVKV 206 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE-------EEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 468899999999999999999999955544433343333331 1233333444444445556677777544433
No 167
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.60 E-value=1.6e+02 Score=29.70 Aligned_cols=110 Identities=18% Similarity=0.351 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC-
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV- 286 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~- 286 (415)
.+.+-+.++++++.+...++-.=.+++.++ | . ..+..++ + ....|. |.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~--~-~~~~~f~---~-d~~~fP--dp~~m~~~l~~~g~~~~~~~~P~ 87 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--Y--M-DGYRVFT---W-DKERFP--DPKELIKELHEQGFKVVTIIDPG 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--h--h-CCCCcee---e-ccccCC--CHHHHHHHHHHCCCEEEEEEeCc
Confidence 456789999999999999988666655322 2 1 1222221 1 112333 5689999999999999877642
Q ss_pred ----Cccc---chhhhcC----CC-------CCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 287 ----PGHA---ESWGAGY----PN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 287 ----PGH~---~~~~~~~----p~-------l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
++.. ++..++| ++ .++ .....+|.+||++.+...+.++++.+
T Consensus 88 v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 88 VKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWP--GLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred eeCCCCChHHHHHHHCCeEEECCCCCEEEEEecC--CCccccCCCChHHHHHHHHHHHHHhh
Confidence 1111 0110010 00 011 01234899999999999999988764
No 168
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=36.24 E-value=39 Score=34.31 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCCC
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF 334 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp~ 334 (415)
.++|+-+--..|++||+++|.. +=||+.-|-...|+-... .+.+.+.+.+.+++-|.-++.-|+.
T Consensus 76 ~G~f~Fe~AD~ia~FAr~h~m~------lhGHtLvW~~q~P~W~~~------~e~~~~~~~~~~e~hI~tV~~rYkg 140 (345)
T COG3693 76 RGRFNFEAADAIANFARKHNMP------LHGHTLVWHSQVPDWLFG------DELSKEALAKMVEEHIKTVVGRYKG 140 (345)
T ss_pred CCccCccchHHHHHHHHHcCCe------eccceeeecccCCchhhc------cccChHHHHHHHHHHHHHHHHhccC
Confidence 4566667777899999999985 469998887666654322 1256777888888888888877765
No 169
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=35.96 E-value=3.8e+02 Score=27.11 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=67.7
Q ss_pred ceeecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 014971 200 GLLIDTSR-HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI 278 (415)
Q Consensus 200 G~~lD~aR-~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI 278 (415)
|++. +| .|.+-+.++++++.+...++-.=.+++..+ |- ..+-..+- ....| .|.+++++..+++|+
T Consensus 12 G~~q--sr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDid--y~---~~~~~Ft~----d~~~F--Pdp~~mv~~L~~~G~ 78 (332)
T cd06601 12 GFHQ--GCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVD--FQ---DNYRTFTT----NGGGF--PNPKEMFDNLHNKGL 78 (332)
T ss_pred hhhh--CCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCc--hh---cCCCceee----cCCCC--CCHHHHHHHHHHCCC
Confidence 5555 44 456899999999999999987555555332 11 12222210 11122 246788999999999
Q ss_pred EEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhh
Q 014971 279 NVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (415)
Q Consensus 279 ~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~ 330 (415)
.+++-++ |+=. +-..++. ...-.|.++|++.+.-.+.++.+.+
T Consensus 79 klv~~i~-P~i~------~g~~~~~--~~~~pDftnp~ar~wW~~~~~~l~~ 121 (332)
T cd06601 79 KCSTNIT-PVIS------YGGGLGS--PGLYPDLGRPDVREWWGNQYKYLFD 121 (332)
T ss_pred eEEEEec-Ccee------cCccCCC--CceeeCCCCHHHHHHHHHHHHHHHh
Confidence 9998886 3211 1111111 1234789999999988888877654
No 170
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=35.74 E-value=61 Score=32.11 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHcCCEEE
Q 014971 262 TVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vI 281 (415)
=++++++|=++|+++|||+-
T Consensus 85 ~~~~l~~iG~~~~~~~iRls 104 (275)
T PF03851_consen 85 FAEELAEIGDLAKENGIRLS 104 (275)
T ss_dssp HHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHcCCeEE
Confidence 46789999999999999984
No 171
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.56 E-value=85 Score=26.56 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=58.7
Q ss_pred EEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcccc---eeecCCCCCCCHHHHHHHHHHHHhCCC
Q 014971 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRG---LLIDTSRHYLPVDVIKQIIESMSYAKL 227 (415)
Q Consensus 151 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG---~~lD~aR~~~~~~~lk~~id~ma~~K~ 227 (415)
|-|-|.+..---+|-+.+.+|..... .-+.+....-+|...|.|+-=. --+|++==+.|.+...++++.+...+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~--~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~ 80 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGY--EVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGV 80 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCC--EEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCC
Confidence 44555444433456666767666320 1111211123566666655322 467888888999999999999999999
Q ss_pred cEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 228 NVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 228 N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
..+.++.. ++-++++++|++.||+++
T Consensus 81 ~~v~~~~g----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 81 KAVWLQPG----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-TT----------------------------S--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcc----------------------------hHHHHHHHHHHHcCCEEE
Confidence 98887641 355789999999999998
No 172
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=34.96 E-value=23 Score=37.72 Aligned_cols=21 Identities=52% Similarity=0.876 Sum_probs=16.1
Q ss_pred HHHHcCCEEEE-------------eecCCcccch
Q 014971 272 FAKMRGINVMA-------------EVDVPGHAES 292 (415)
Q Consensus 272 yA~~rgI~vIP-------------EiD~PGH~~~ 292 (415)
.-++|||+|.- -+|+|||+..
T Consensus 48 lEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 48 LEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred hhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 44688887754 4999999986
No 173
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.94 E-value=1.4e+02 Score=30.33 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=51.5
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCcE--EEEEeecCCCCCCCCCCCCC--cc-ccCCCC--------CCCCCHHHHHHHHH
Q 014971 206 SRHYL-PVDVIKQIIESMSYAKLNV--LHWHIIDEQSFPLEVPTYPN--LW-KGAYSK--------WERYTVEDAHEIVS 271 (415)
Q Consensus 206 aR~~~-~~~~lk~~id~ma~~K~N~--lh~hltD~~~~~~e~~~~P~--l~-~g~~~~--------~~~YT~~ei~~lv~ 271 (415)
+-|+- +++..+++||..+..+.+. ||.+-.|. +-. +..++ .. .+.|.. .-..+.++.++|.+
T Consensus 9 G~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~ 84 (327)
T TIGR03586 9 SANHNGSLERALAMIEAAKAAGADAIKLQTYTPDT--ITL--DSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFE 84 (327)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHH--hhc--cccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHH
Confidence 33443 6899999999999999985 44433222 100 11100 00 011210 11368899999999
Q ss_pred HHHHcCCEEEEeecCCcccch
Q 014971 272 FAKMRGINVMAEVDVPGHAES 292 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~~~ 292 (415)
||+++||.++-+.=-..+.+.
T Consensus 85 ~~~~~Gi~~~stpfd~~svd~ 105 (327)
T TIGR03586 85 RAKELGLTIFSSPFDETAVDF 105 (327)
T ss_pred HHHHhCCcEEEccCCHHHHHH
Confidence 999999999988655555544
No 174
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=34.82 E-value=3.2e+02 Score=27.70 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=69.4
Q ss_pred eEEecCCCCcccce-eecC-----CCCC-------------CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCC
Q 014971 188 WYIQDKPRFAFRGL-LIDT-----SRHY-------------LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248 (415)
Q Consensus 188 ~~I~D~P~f~~RG~-~lD~-----aR~~-------------~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P 248 (415)
+.+.+.|+.+.|-+ |.|- =|.| ...+.+.+.-+.+|..++|-..+-=... .|
T Consensus 13 ~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa---------~~ 83 (328)
T PF07488_consen 13 LDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNA---------NP 83 (328)
T ss_dssp -EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS-----------C
T ss_pred CccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEeccccc---------Ch
Confidence 46788888887765 3333 1221 1246788899999999999888732211 22
Q ss_pred C-ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHH
Q 014971 249 N-LWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSD 327 (415)
Q Consensus 249 ~-l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E 327 (415)
. |+. . -.++++.|.+-.+.+||+|.-.++.-+-.. + ....+.||.+|++.+.-++..+|
T Consensus 84 ~~Lt~-~-------~l~~v~~lAdvfRpYGIkv~LSvnFasP~~--------l----ggL~TaDPld~~V~~WW~~k~~e 143 (328)
T PF07488_consen 84 KLLTP-E-------YLDKVARLADVFRPYGIKVYLSVNFASPIE--------L----GGLPTADPLDPEVRQWWKDKADE 143 (328)
T ss_dssp GGGST-T-------THHHHHHHHHHHHHTT-EEEEEE-TTHHHH--------T----TS-S---TTSHHHHHHHHHHHHH
T ss_pred hhcCH-H-------HHHHHHHHHHHHhhcCCEEEEEeeccCCcc--------c----CCcCcCCCCCHHHHHHHHHHHHH
Confidence 2 111 0 256889999999999999999987654221 1 11246789999999999999999
Q ss_pred HhhcCCC
Q 014971 328 LRKIFPF 334 (415)
Q Consensus 328 ~~~lFp~ 334 (415)
+-+..|+
T Consensus 144 IY~~IPD 150 (328)
T PF07488_consen 144 IYSAIPD 150 (328)
T ss_dssp HHHH-TT
T ss_pred HHHhCCC
Confidence 9998886
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.37 E-value=54 Score=31.68 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
++.+++.|+.++..+.+.+.++-. +.. +.+.. ...-....+-+++++++|+++||++.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~-----~~~---~~~~~----~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY-----DVY---YEEHD----EETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc-----ccc---cCcCC----HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 667999999999999999877421 110 00000 00012346789999999999999999994
No 176
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=34.18 E-value=72 Score=33.52 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=51.6
Q ss_pred cceeecCCCCC---CC---HHHHHHHHHHHHh-CCC-cEEEEEeecCCCC-CCCCCCCCCccccCCCCCCCCCHHHHHHH
Q 014971 199 RGLLIDTSRHY---LP---VDVIKQIIESMSY-AKL-NVLHWHIIDEQSF-PLEVPTYPNLWKGAYSKWERYTVEDAHEI 269 (415)
Q Consensus 199 RG~~lD~aR~~---~~---~~~lk~~id~ma~-~K~-N~lh~hltD~~~~-~~e~~~~P~l~~g~~~~~~~YT~~ei~~l 269 (415)
=|+.||++.-| +. .+.+.++++.+.. .++ ..-|+|+.|+.+= .=-.+.+-.+ +.|..-.+-++.|
T Consensus 303 lGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~I------G~G~Ig~~~f~~l 376 (413)
T PTZ00372 303 VGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENI------GKGKLGMETFKFI 376 (413)
T ss_pred eEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCc------CCCCcChHHHHHH
Confidence 48999998765 43 3455666665532 333 4668888887431 0001122222 2456778899999
Q ss_pred HHHHHHcCCEEEEee
Q 014971 270 VSFAKMRGINVMAEV 284 (415)
Q Consensus 270 v~yA~~rgI~vIPEi 284 (415)
+...+-.+|-+|-|.
T Consensus 377 ~~~~~~~~iP~ILET 391 (413)
T PTZ00372 377 MNSKYFKNIPIILET 391 (413)
T ss_pred HhChhhCCCeEEEeC
Confidence 999999999999884
No 177
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=34.05 E-value=2.3e+02 Score=27.87 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
+.+.+++.++.+...+.+.+-+.++.....+. .......++.++++++++.|+++|+.|.-....
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-----------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~ 182 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG-----------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG 182 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-----------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47888999999999999999888753321111 011223589999999999999999998876543
No 178
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=34.03 E-value=1.5e+02 Score=28.87 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=38.0
Q ss_pred HHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 014971 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (415)
Q Consensus 218 ~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~P 287 (415)
.++....++...+++-.++ ++.+++++++++|+.+|.+++-|+...
T Consensus 125 qi~~a~~~GAD~VlLi~~~------------------------l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA------------------------LDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHcCCCEEEEEecc------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6888889999999885431 356799999999999999999998554
No 179
>PRK08361 aspartate aminotransferase; Provisional
Probab=33.72 E-value=1.8e+02 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++++-||
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK08361 180 GATLDKEVAKAIADIAEDYNIYIL 203 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEE
Confidence 457899999999999999998766
No 180
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=33.60 E-value=1.3e+02 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 213 ~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
..++++++....+++++.-+ +|. .-..+.++..++++.++++|..|.||+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi--S~G--------------------~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI--SDG--------------------SMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE--cCC--------------------ccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 56677777888888885443 332 123578899999999999999999998
No 181
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=33.14 E-value=37 Score=36.91 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHcCCEEE----------------EeecCCcccch
Q 014971 262 TVEDAHEIVSFAKMRGINVM----------------AEVDVPGHAES 292 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vI----------------PEiD~PGH~~~ 292 (415)
-++++-+=++--|+|||+|- =-||||||+..
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 36677777777899999774 45999999986
No 182
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=32.98 E-value=2.3e+02 Score=32.31 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=84.5
Q ss_pred ecCCCCcccceeecCCCCCCC--HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHH
Q 014971 191 QDKPRFAFRGLLIDTSRHYLP--VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHE 268 (415)
Q Consensus 191 ~D~P~f~~RG~~lD~aR~~~~--~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~ 268 (415)
++-|...|||+=+...+.|.. ...++.+.+.++..+.+-+++- +|.++ |.+|+++
T Consensus 590 E~NP~LG~RGir~~l~~~~~~lf~~qlraI~ral~d~G~~~~~Im-------------~PmV~----------s~eE~~~ 646 (782)
T TIGR01418 590 EENPMLGWRGASRYYSESYEEAFRLECRAIKRVREEMGLTNVEVM-------------IPFVR----------TPEEGKR 646 (782)
T ss_pred CCCcccccchhhhhcccccHHHHHHHHHHHHHHHHhcCCCCeEEE-------------ecCCC----------CHHHHHH
Confidence 566999999997666442222 1223333333334465555553 35553 8999999
Q ss_pred HHHHHHHcC-------CEEEEeecCCcccch---hhhcCCCC---CCCC-------------CCCCcCCCCChhHHHHHH
Q 014971 269 IVSFAKMRG-------INVMAEVDVPGHAES---WGAGYPNL---WPSP-------------SCREPLDVSKNFTFEVIS 322 (415)
Q Consensus 269 lv~yA~~rg-------I~vIPEiD~PGH~~~---~~~~~p~l---~~~~-------------~~~~~ld~~~~~t~~fl~ 322 (415)
++++++..| +.|+.-|++|.=+.. +.+ +=++ .+++ ......++.+|+..+.++
T Consensus 647 ~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~-~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~ 725 (782)
T TIGR01418 647 ALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAK-EFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIE 725 (782)
T ss_pred HHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHH-hCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHH
Confidence 999998754 568888899865443 222 1221 1111 112357888999999999
Q ss_pred HHHHHHhhcCCCCeEEeCCCCCCCcCCCCCHHHHHHHHHCCCC
Q 014971 323 GILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365 (415)
Q Consensus 323 ~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~ 365 (415)
.+++..... ...+-+.|+.. .++|....++-..|++
T Consensus 726 ~vi~~a~~~--g~~vgicge~~-----~~~p~~~~~l~~~G~~ 761 (782)
T TIGR01418 726 MAIKAAKEH--GKKVGICGQAP-----SDYPEVVEFLVEEGID 761 (782)
T ss_pred HHHHHHHhc--CCeEEEeCCCC-----CCCHHHHHHHHHcCCC
Confidence 999887652 22233333211 1146666777777764
No 183
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.93 E-value=4.2e+02 Score=26.81 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCC-------CCCCc-cccCCC-CCCCCCH-
Q 014971 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVP-------TYPNL-WKGAYS-KWERYTV- 263 (415)
Q Consensus 194 P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~-------~~P~l-~~g~~~-~~~~YT~- 263 (415)
|++.+ |++.--- .|.+-+.++++++.+...++..=-++|.| |--... .|-.. ....+. ....|..
T Consensus 7 P~wal-G~~~sr~-~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~---W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~ 81 (340)
T cd06597 7 PKWAF-GLWMSAN-EWDTQAEVMRQMDAHEEHGIPVTVVVIEQ---WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVE 81 (340)
T ss_pred chHHh-hhhhhcc-CCCCHHHHHHHHHHHHHcCCCeeEEEEec---ccCcceeeeeccchhcccccCCcceecccccCcc
Confidence 55555 5443221 46789999999999999999866665532 211100 00000 000000 0011211
Q ss_pred ---HHHHHHHHHHHHcCCEEE----EeecCCccc--c-------hhhhcC----C--------CCCCCCCCCCcCCCCCh
Q 014971 264 ---EDAHEIVSFAKMRGINVM----AEVDVPGHA--E-------SWGAGY----P--------NLWPSPSCREPLDVSKN 315 (415)
Q Consensus 264 ---~ei~~lv~yA~~rgI~vI----PEiD~PGH~--~-------~~~~~~----p--------~l~~~~~~~~~ld~~~~ 315 (415)
-|.+++++..+++|++|+ |-|+.=-|. . +..++| + ..++ .....+|.+||
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~--g~~~~~Dftnp 159 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWF--PDSLMLDFTNP 159 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccC--CCceeecCCCH
Confidence 268999999999999995 777531111 1 111110 0 0111 11235999999
Q ss_pred hHHHHHHHHHHHHhh
Q 014971 316 FTFEVISGILSDLRK 330 (415)
Q Consensus 316 ~t~~fl~~l~~E~~~ 330 (415)
++.+.-.+.++++..
T Consensus 160 ~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 160 EAAQWWMEKRRYLVD 174 (340)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998998888763
No 184
>PRK09148 aminotransferase; Validated
Probab=32.71 E-value=1.8e+02 Score=29.68 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 257 KWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 257 ~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
.+..|+.+++++|++.|+++|+-||
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999998766
No 185
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=32.55 E-value=1e+02 Score=30.30 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeec
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI-NVMAEVD 285 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI-~vIPEiD 285 (415)
++.++.+.++++++.++..+...+. ++..+ | .-..++.+++++++++|+ .+ .+.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~--~tGGE---------P------------ll~~~l~~iv~~l~~~g~~~v--~i~ 91 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVK--ITGGE---------P------------LLRKDLIEIIRRIKDYGIKDV--SMT 91 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEE--EECcc---------c------------ccccCHHHHHHHHHhCCCceE--EEE
Confidence 4678999999999999988877544 44322 2 223467889999998887 43 345
Q ss_pred CCcc
Q 014971 286 VPGH 289 (415)
Q Consensus 286 ~PGH 289 (415)
|-|.
T Consensus 92 TNG~ 95 (302)
T TIGR02668 92 TNGI 95 (302)
T ss_pred cCch
Confidence 6564
No 186
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=31.17 E-value=2.2e+02 Score=28.06 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCC-CCCCCCCCCCCcc-ccC------C-CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQ-SFPLEVPTYPNLW-KGA------Y-SKWERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~-~~~~e~~~~P~l~-~g~------~-~~~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
..+..+.+++..+..++|++++-+.-.. +..-. ..+|... .+. + +.+..| -+.+..+|++|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 4578889999999999999999875321 11110 1223222 010 0 011111 2568899999999999874
No 187
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=31.06 E-value=3.7e+02 Score=26.46 Aligned_cols=90 Identities=22% Similarity=0.261 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCEEEEeecCCc--ccchhhhcCCCCCCCCCCCCcCCCCChhHH-HHHHHHHHHHhhcCCCCeEEeCCCC
Q 014971 267 HEIVSFAKMRGINVMAEVDVPG--HAESWGAGYPNLWPSPSCREPLDVSKNFTF-EVISGILSDLRKIFPFELFHLGGDE 343 (415)
Q Consensus 267 ~~lv~yA~~rgI~vIPEiD~PG--H~~~~~~~~p~l~~~~~~~~~ld~~~~~t~-~fl~~l~~E~~~lFp~~~~HiGgDE 343 (415)
.++++.|+++|++|+|.|--.+ +... .....+ ..+++.. .|+.++++-+.+. |-|=
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~--~~~~~~-----------l~~~~~r~~fi~~iv~~l~~~--------~~DG 106 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDS--ELAHAV-----------LSNPEARQRLINNILALAKKY--------GYDG 106 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCH--HHHHHH-----------hcCHHHHHHHHHHHHHHHHHh--------CCCc
Confidence 5899999999999999994332 1100 000000 2345544 4888888777653 2232
Q ss_pred CCCcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeE
Q 014971 344 VNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTP 388 (415)
Q Consensus 344 v~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~ 388 (415)
+.. .|+.-+ .+..+.+..|++.+.+.+.++|+..
T Consensus 107 idi-DwE~~~----------~~d~~~~~~fl~~lr~~l~~~~~~l 140 (313)
T cd02874 107 VNI-DFENVP----------PEDREAYTQFLRELSDRLHPAGYTL 140 (313)
T ss_pred EEE-ecccCC----------HHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 222 132210 0123568899999999998877653
No 188
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=30.72 E-value=45 Score=35.10 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCEE-------------EEeecCCcccch
Q 014971 265 DAHEIVSFAKMRGINV-------------MAEVDVPGHAES 292 (415)
Q Consensus 265 ei~~lv~yA~~rgI~v-------------IPEiD~PGH~~~ 292 (415)
-+.++++.-++|||+| |-.||+|||...
T Consensus 75 tvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 75 TVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4667788889999988 556999999875
No 189
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=30.70 E-value=3.5e+02 Score=27.07 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=67.5
Q ss_pred eEEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcc--------------------cceeecCCCCC
Q 014971 150 EATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAF--------------------RGLLIDTSRHY 209 (415)
Q Consensus 150 ~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~--------------------RG~~lD~aR~~ 209 (415)
.|.|-..++.|---+++++.+--..=.+.+--.+|..--.|+ |+..| -|+|+..+-
T Consensus 150 ~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VR--p~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGE-- 225 (306)
T COG0320 150 TIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVR--PGATYERSLSLLERAKELGPDIPTKSGLMVGLGE-- 225 (306)
T ss_pred eEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccC--CCCcHHHHHHHHHHHHHhCCCcccccceeeecCC--
Confidence 478888888998888888776433111111011221111233 44443 367777663
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~ 279 (415)
..+.+.+.++-|...+...+-+- |= ++ ++---| .-..+||.+|++++-++|.+.|..
T Consensus 226 -t~~Ev~e~m~DLr~~gvdilTiG----QY--lq-PS~~Hl-----pV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 226 -TDEEVIEVMDDLRSAGVDILTIG----QY--LQ-PSRKHL-----PVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred -cHHHHHHHHHHHHHcCCCEEEec----cc--cC-CccccC-----CceeccCHHHHHHHHHHHHHccch
Confidence 36778888888888888877652 10 00 000001 124579999999999999999873
No 190
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=30.61 E-value=52 Score=25.90 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCC
Q 014971 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNL 300 (415)
Q Consensus 260 ~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l 300 (415)
-+...=++..++||+++|..|+|. ..=+..+.+.+|++
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p~---C~y~~~~~~~hpey 75 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVPT---CSYVAKYFRRHPEY 75 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEET---SHHHHHHHHH-GGG
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEE---CHHHHHHHHhCccc
Confidence 367888999999999999999996 22334566677764
No 191
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=30.22 E-value=4.2e+02 Score=29.00 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=71.2
Q ss_pred ce-eecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 014971 200 GL-LIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG 277 (415)
Q Consensus 200 G~-~lD~aR~-~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rg 277 (415)
|. +|-++|. +-+.+.++++++.+..++++.|..==- ++ |-.....|.+|++++|
T Consensus 138 Gsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGG----------------------dd--S~~~A~~Lae~~~~~g 193 (550)
T cd00765 138 GFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGG----------------------DD--SNTNAALLAENFRSKG 193 (550)
T ss_pred ChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC----------------------ch--HHHHHHHHHHHHHhcC
Confidence 66 8999995 445678999999999999999987211 11 5566778999999999
Q ss_pred --CEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHh-hcCCC-CeEEeCCCCCCC
Q 014971 278 --INVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLR-KIFPF-ELFHLGGDEVNT 346 (415)
Q Consensus 278 --I~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~-~lFp~-~~~HiGgDEv~~ 346 (415)
|.|| =.|.=. ..++... .-..++.-+.+.+++.++++++. +.-.+ +++|+ =|+.+
T Consensus 194 ~~i~VI---GVPKTI------DNDl~~t---~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~--VEvMG 252 (550)
T cd00765 194 LKTRVI---GVPKTI------DGDLKNK---EIETSFGFDTATKIYSELIGNVMRDARSTGKYWHF--VKLMG 252 (550)
T ss_pred CCceEE---EEeeee------cCCCCCC---CCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEE--EEeCC
Confidence 5554 344311 1222110 01246778889999999999887 44333 45553 34543
No 192
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.06 E-value=67 Score=30.76 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCC------CC-CCCCCccccCCCCCCCCCHHHH-----------------
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL------EV-PTYPNLWKGAYSKWERYTVEDA----------------- 266 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~------e~-~~~P~l~~g~~~~~~~YT~~ei----------------- 266 (415)
+.+...++.+.+..-++..+-+-++..++... +. +.||++..|+ +..+|.+++
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa---GTVl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGV---GSIVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee---EeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 67889999999999999999988865543321 11 4678876553 445666665
Q ss_pred HHHHHHHHHcCCEEEEeecCCcccch
Q 014971 267 HEIVSFAKMRGINVMAEVDVPGHAES 292 (415)
Q Consensus 267 ~~lv~yA~~rgI~vIPEiD~PGH~~~ 292 (415)
.+++++|+++||-++|-.=||.-...
T Consensus 102 ~~v~~~~~~~~i~~iPG~~TpsEi~~ 127 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSLSEIGY 127 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 46889999999999999999976543
No 193
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=1.7e+02 Score=30.03 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
.+.+.-+.+||.|+.+++-.+---+ ..|+-+ ...-.+-+++|+++|++.|+++|-.| .|+
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl-----------~~~~~~-------~~~~~~~~~ell~~Anklg~~vivDv-nPs 72 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSL-----------LIPEED-------AELYFHRFKELLKEANKLGLRVIVDV-NPS 72 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeec-----------ccCCch-------HHHHHHHHHHHHHHHHhcCcEEEEEc-CHH
Confidence 3567789999999999998665433 122211 11124568999999999999999888 454
No 194
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=29.62 E-value=1.8e+02 Score=29.94 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeecC
Q 014971 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR-GINVMAEVDV 286 (415)
Q Consensus 208 ~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r-gI~vIPEiD~ 286 (415)
..++.+.++++++.++..+...+.+ +- ++..-..|+.+|++++++. |+..+ .|.|
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~--tG---------------------GEPllr~dl~eli~~l~~~~gi~~i-~itT 143 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRL--TG---------------------GEPTLRKDIEDICLQLSSLKGLKTL-AMTT 143 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEE--EC---------------------CCCcchhhHHHHHHHHHhcCCCceE-EEee
Confidence 5689999999999999888876554 32 1222345788899998886 77422 4456
Q ss_pred Cccc
Q 014971 287 PGHA 290 (415)
Q Consensus 287 PGH~ 290 (415)
-|..
T Consensus 144 NG~l 147 (373)
T PLN02951 144 NGIT 147 (373)
T ss_pred Ccch
Confidence 6653
No 195
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=29.50 E-value=2.1e+02 Score=29.03 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++|+-||
T Consensus 182 G~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 182 GSVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 457899999999999999998776
No 196
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=28.99 E-value=3.6e+02 Score=26.26 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 209 YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 209 ~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
.+|.+.+++-|..|...++|.+=.| .+|. =.++.+.|.+.||-|+.|+...|
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~------------h~p~----------------~~~~~~~cD~~GilV~~e~~~~~ 83 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH------------HYPP----------------SPRFYDLCDELGILVWQEIPLEG 83 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET------------TS------------------SHHHHHHHHHHT-EEEEE-S-BS
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc------------cccC----------------cHHHHHHHhhcCCEEEEeccccc
Confidence 4688999999999999999987764 1221 14678899999999999998766
Q ss_pred ccchh--h--------------------------hcCCCCCCCCCCCCcCCCCCh-hHHHHHHHHHHHHhhcCCCCeEEe
Q 014971 289 HAESW--G--------------------------AGYPNLWPSPSCREPLDVSKN-FTFEVISGILSDLRKIFPFELFHL 339 (415)
Q Consensus 289 H~~~~--~--------------------------~~~p~l~~~~~~~~~ld~~~~-~t~~fl~~l~~E~~~lFp~~~~Hi 339 (415)
|...- . +.||.+. ..++.|+ ....+++++.+.+.++=|++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi-------~W~~gNE~~~~~~~~~l~~~~k~~DptRpv~~ 156 (298)
T PF02836_consen 84 HGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSII-------MWSLGNESDYREFLKELYDLVKKLDPTRPVTY 156 (298)
T ss_dssp CTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEE-------EEEEEESSHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred cCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchh-------eeecCccCccccchhHHHHHHHhcCCCCceee
Confidence 64221 0 0122220 1122222 455677777777777778887777
Q ss_pred CCC
Q 014971 340 GGD 342 (415)
Q Consensus 340 GgD 342 (415)
+.+
T Consensus 157 ~~~ 159 (298)
T PF02836_consen 157 ASN 159 (298)
T ss_dssp ETG
T ss_pred ccc
Confidence 666
No 197
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=28.62 E-value=1.9e+02 Score=29.43 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHH-HHHHHHHHHhhcCCCCeEEeCCCCCC
Q 014971 267 HEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFE-VISGILSDLRKIFPFELFHLGGDEVN 345 (415)
Q Consensus 267 ~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~-fl~~l~~E~~~lFp~~~~HiGgDEv~ 345 (415)
.+++.+|+++||+|++..+.|.. ...+++..+ |++++++.+.+.. -|=++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~---------------------~l~~~~~R~~fi~siv~~~~~~g--------fDGId 117 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLE---------------------QISNPTYRTQWIQQKVELAKSQF--------MDGIN 117 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHH---------------------HcCCHHHHHHHHHHHHHHHHHhC--------CCeEE
Confidence 48899999999999986433311 134555554 8899998776532 22221
Q ss_pred CcCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCC
Q 014971 346 TDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385 (415)
Q Consensus 346 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g 385 (415)
- .|+. |.. .+-...+.+..|++++.+.+++.|
T Consensus 118 I-DwE~-p~~------~~~~d~~~~t~llkelr~~l~~~~ 149 (358)
T cd02875 118 I-DIEQ-PIT------KGSPEYYALTELVKETTKAFKKEN 149 (358)
T ss_pred E-cccC-CCC------CCcchHHHHHHHHHHHHHHHhhcC
Confidence 1 1221 100 011123567889999988887764
No 198
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=28.55 E-value=4.1e+02 Score=29.09 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=66.8
Q ss_pred ce-eecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc-
Q 014971 200 GL-LIDTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR- 276 (415)
Q Consensus 200 G~-~lD~aR~~-~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r- 276 (415)
|. +|-++|.- .+.+.+++.++.+..++++.|..==- ++ |......|.+|++++
T Consensus 136 G~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGG----------------------d~--S~~~A~~Lae~~~~~~ 191 (555)
T PRK07085 136 GFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGG----------------------DD--SNTNAAILAEYFAKHG 191 (555)
T ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC----------------------ch--HHHHHHHHHHHHHHhC
Confidence 66 89999964 46789999999999999999987211 11 455667888999887
Q ss_pred -CCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHH-hhcCCC-CeEE
Q 014971 277 -GINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDL-RKIFPF-ELFH 338 (415)
Q Consensus 277 -gI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~-~~lFp~-~~~H 338 (415)
+|.|| =.|+=. ..+|... .-..++.-+.+.+++.++++++ .+.-.+ +++|
T Consensus 192 ~~i~VI---GIPkTI------DNDl~~~---~id~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~ 244 (555)
T PRK07085 192 CKTQVI---GVPKTI------DGDLKNE---FIETSFGFDTATKTYSEMIGNISRDALSAKKYWH 244 (555)
T ss_pred CCccEE---EEeeee------cCCCCCC---cccccCCHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 55444 344311 1222110 0135577788888888888888 333322 4555
No 199
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=27.76 E-value=1.6e+02 Score=32.05 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..|+|.|+.+..++++++.-= .+|+. + |.+|+..|.+||+++||.++.
T Consensus 358 l~NL~RHIenvr~FGvPvVVAI-----------NKFd~--------D---Te~Ei~~I~~~c~e~Gv~va~ 406 (557)
T PRK13505 358 FANLERHIENIRKFGVPVVVAI-----------NKFVT--------D---TDAEIAALKELCEELGVEVAL 406 (557)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE-----------eCCCC--------C---CHHHHHHHHHHHHHcCCCEEE
Confidence 3568899999999999977652 23322 1 788999999999999999873
No 200
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=27.61 E-value=2.3e+02 Score=28.34 Aligned_cols=24 Identities=13% Similarity=-0.093 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vI 281 (415)
+..++.+++++|++.|+++|+-||
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEE
Confidence 447899999999999999998876
No 201
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=27.43 E-value=40 Score=26.10 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCc
Q 014971 206 SRHYLPVDVIKQIIESMSY-AKLN 228 (415)
Q Consensus 206 aR~~~~~~~lk~~id~ma~-~K~N 228 (415)
.|||+|...++++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4899999999999999999 8876
No 202
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=27.27 E-value=53 Score=34.07 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhC----CCcEEEEEeecCCCCCCCCCCCCCcc---ccCCCCC--CCCCHHHHHHHHHHHH--HcCCE
Q 014971 211 PVDVIKQIIESMSYA----KLNVLHWHIIDEQSFPLEVPTYPNLW---KGAYSKW--ERYTVEDAHEIVSFAK--MRGIN 279 (415)
Q Consensus 211 ~~~~lk~~id~ma~~----K~N~lh~hltD~~~~~~e~~~~P~l~---~g~~~~~--~~YT~~ei~~lv~yA~--~rgI~ 279 (415)
|.+.+++.++.++.+ +-+.|-+||+ - |-++ +|+..+. ..-+.+|++++.+-|+ .+=|+
T Consensus 99 ~~e~i~~al~~~~e~~~~~ga~ilGiHLE--------G---P~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vT 167 (380)
T COG1820 99 SLEKIKAALRAIREAIAKGGAQILGIHLE--------G---PFLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVT 167 (380)
T ss_pred CHHHHHHHHHHHHHHHhccCCceEEEEee--------c---CccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEE
Confidence 346666666666655 4478999984 2 3333 6664221 1235555555555554 23366
Q ss_pred EEEeec
Q 014971 280 VMAEVD 285 (415)
Q Consensus 280 vIPEiD 285 (415)
+-||.+
T Consensus 168 lAPE~~ 173 (380)
T COG1820 168 LAPELD 173 (380)
T ss_pred ECCCCC
Confidence 777776
No 203
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.01 E-value=81 Score=30.27 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
++.+++.|+.++..+.+.+-++-.+. + .. ...++. -.-..+.++++.++|+++||++.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~-~~-~~~~~~--------~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDV--Y-YE-EKSEET--------RQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccc--c-cc-cccHHH--------HHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 67789999999999999987642110 0 00 000000 01234679999999999999999997
No 204
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=26.92 E-value=1.4e+02 Score=30.16 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCC--CChhHHHHHHHHHHHHhhcCCCC
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDV--SKNFTFEVISGILSDLRKIFPFE 335 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~--~~~~t~~fl~~l~~E~~~lFp~~ 335 (415)
..-+|-++++.|.+-----||..+|.+ +.. ....+.+-+-+-++-+.++....
T Consensus 211 ~RNltDe~iraia~~GGviGi~~~~~f-------------------------l~~~~~~~~~~~~~~~Hi~y~~~l~G~d 265 (320)
T PF01244_consen 211 PRNLTDEQIRAIAERGGVIGINFYPAF-------------------------LGDDWDPRASLDDLVDHIDYIVDLVGID 265 (320)
T ss_dssp TTSB-HHHHHHHHHTT-EEEEESSHHH-------------------------HSTTHSSG-BHHHHHHHHHHHHHHH-GG
T ss_pred CCCCCHHHHHHHHHCCcEEEEEcchhh-------------------------hcccccccccHHHHHHHHHHHHHhcCCC
Confidence 345788888888664444444333322 111 12334444555556666777677
Q ss_pred eEEeCCCC--C-----CCcCCCCCHHHHHHHHHCCCChHHH
Q 014971 336 LFHLGGDE--V-----NTDCWSSTPHVKKWLRDHKLTAKEA 369 (415)
Q Consensus 336 ~~HiGgDE--v-----~~~~w~~~p~~~~~~~~~g~~~~~l 369 (415)
.+=||+|= . .......-|.+.+.|.+.|++..++
T Consensus 266 hVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i 306 (320)
T PF01244_consen 266 HVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDI 306 (320)
T ss_dssp GEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHH
T ss_pred eEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHH
Confidence 88888872 1 1122344578889999999987643
No 205
>PRK09989 hypothetical protein; Provisional
Probab=26.89 E-value=1.3e+02 Score=28.76 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=46.1
Q ss_pred cceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 014971 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI 278 (415)
Q Consensus 199 RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI 278 (415)
=|+++|+..-+..=..+..+++. ++=-..|+|+.|.... ..| ..|. =++.++++..++.|.
T Consensus 173 v~l~lD~~h~~~~~~~~~~~i~~---~~~ri~hvHi~D~~~~-----~~p--G~G~---------id~~~i~~al~~~Gy 233 (258)
T PRK09989 173 VFIQLDTFHAQKVDGNLTHLIRD---YAGKYAHVQIAGLPDR-----HEP--DDGE---------INYPWLFRLFDEVGY 233 (258)
T ss_pred eEEEeehHhHHHcCCCHHHHHHH---hhhhEEEEEECCCCCC-----CCC--CCCC---------cCHHHHHHHHHHcCC
Confidence 47889986443321223333333 2334669999984221 112 1121 277889999999888
Q ss_pred E--EEEeecCCcccchhhh
Q 014971 279 N--VMAEVDVPGHAESWGA 295 (415)
Q Consensus 279 ~--vIPEiD~PGH~~~~~~ 295 (415)
+ |..|.--.||+...++
T Consensus 234 ~g~is~E~~~~~~~~~~~~ 252 (258)
T PRK09989 234 QGWIGCEYKPRGLTEEGLG 252 (258)
T ss_pred CeEEEEEEeeCCCCHHHHH
Confidence 6 7888877788765443
No 206
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.72 E-value=78 Score=30.53 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCC-CCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEV-PTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~-~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
++.+++.|+..+..+...+-++ +++... ...++- .....+.+++|.++|+++||++.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~--------~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNET--------RRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHH--------HHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 6678999999999999988764 221100 000000 01245688999999999999999996
No 207
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.68 E-value=4.5e+02 Score=27.66 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=66.6
Q ss_pred EEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCc-ccc--eeecCCCCCCCHHHHHHHHHHHHhCCC
Q 014971 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFA-FRG--LLIDTSRHYLPVDVIKQIIESMSYAKL 227 (415)
Q Consensus 151 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~-~RG--~~lD~aR~~~~~~~lk~~id~ma~~K~ 227 (415)
|-|.|.+..---+|-..+.+|......+.-+.+....-+|..-|.|+ .+- --+|++==+.|.+...+.++.+...+.
T Consensus 10 iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~gv 89 (447)
T TIGR02717 10 VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEKGV 89 (447)
T ss_pred EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhcCC
Confidence 45555543332345566666665433221111211112455555553 111 136777778999999999999999999
Q ss_pred cEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE-E
Q 014971 228 NVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM-A 282 (415)
Q Consensus 228 N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vI-P 282 (415)
-...+.- .+|++.. . . ..+.-++|+++|+++||+|+ |
T Consensus 90 ~~~vi~s----------~gf~e~g--~---~---g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 90 KGAVVIT----------AGFKEVG--E---E---GAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CEEEEEC----------CCccccC--c---c---hHHHHHHHHHHHHHcCCEEEec
Confidence 8877742 2344431 0 0 12234789999999999988 5
No 208
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.25 E-value=60 Score=31.32 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 210 ~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
-.++.+++.|+.++..+.+.+-+|.... +... ....-....+-+++++++|+++||++.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~----------~~~~---~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSY----------LGQS---KEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCC----------CCCC---HHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3478899999999999999888775311 1000 000012346789999999999999999885
No 209
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=5.2e+02 Score=30.39 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCC---CCcc--ccCCCCCCCCCHHHHHHHHHHHH-HcCCEEEEee
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTY---PNLW--KGAYSKWERYTVEDAHEIVSFAK-MRGINVMAEV 284 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~---P~l~--~g~~~~~~~YT~~ei~~lv~yA~-~rgI~vIPEi 284 (415)
|++..+..++..+..++|++|+-.--.-|-. -..| -+|. ..-.+.++.||-+|++.||+-++ +.||--|-.|
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S--~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~Dv 217 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLS--RSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDV 217 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccC--CCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehh
Confidence 3456677888899999999988643221100 0000 0111 11124567899999999999986 6777777666
Q ss_pred cCCcccch---hhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHH-hhcCCCCeEEeCCCCC-CCcCCCCCHHHHHHH
Q 014971 285 DVPGHAES---WGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDL-RKIFPFELFHLGGDEV-NTDCWSSTPHVKKWL 359 (415)
Q Consensus 285 D~PGH~~~---~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~-~~lFp~~~~HiGgDEv-~~~~w~~~p~~~~~~ 359 (415)
..-|+.. |+..|||-..+ |. -+|---.++ +++..+-++ +++-...|=|-|---+ .+.| .-.+++..+
T Consensus 218 -V~NHtAnns~WlleHPea~Yn--~~--~sPhLrpA~-~lD~~~~~f~~di~eg~~eh~GvP~vieni~--hl~ai~~~i 289 (1521)
T KOG3625|consen 218 -VYNHTANNSKWLLEHPEAAYN--CV--NSPHLRPAW-VLDRALWRFSCDIAEGKYEHKGVPAVIENIH--HLNAIRYII 289 (1521)
T ss_pred -hhhccccCCchhHhCchhhhc--cc--CCcccchHH-HHHHHHHHhccccccCcccccCCchhhhhhH--HHHHHHHHH
Confidence 6678754 88888875221 11 111111122 334444444 2333457777776433 2211 112455555
Q ss_pred HHCCCChHHHHHHHHHHHHHHHH
Q 014971 360 RDHKLTAKEAYQYFVLTAQKIAI 382 (415)
Q Consensus 360 ~~~g~~~~~l~~~f~~~~~~~v~ 382 (415)
...-+...+++.+|.-.+.++|.
T Consensus 290 ~~~vl~kl~l~E~yqvdv~~~vn 312 (1521)
T KOG3625|consen 290 WEDVLPKLKLWEFYQVDVNKAVN 312 (1521)
T ss_pred HHHHhccccHHHHHHhhHHHHHH
Confidence 55545445667777666665554
No 210
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=25.77 E-value=6.8e+02 Score=27.55 Aligned_cols=153 Identities=11% Similarity=0.082 Sum_probs=89.9
Q ss_pred EEEEECChHhHHHHHHHHHhhcccCCCCcee-Ee--------eccceEEecCCC--Ccc-cce-eecCCCCC-CCHHHHH
Q 014971 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSV-LV--------YKAPWYIQDKPR--FAF-RGL-LIDTSRHY-LPVDVIK 216 (415)
Q Consensus 151 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~-~~--------~~~~~~I~D~P~--f~~-RG~-~lD~aR~~-~~~~~lk 216 (415)
|...|....|....+..+..-+........+ -+ ...-+.+++..- |.. =|+ +|-++|.. -..+.++
T Consensus 101 Iv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~ 180 (568)
T PLN02251 101 VVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK 180 (568)
T ss_pred EECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHH
Confidence 6777778888888877766654321111000 00 001122333222 222 345 78888864 3578899
Q ss_pred HHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC--CEEEEeecCCcccchhh
Q 014971 217 QIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG--INVMAEVDVPGHAESWG 294 (415)
Q Consensus 217 ~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rg--I~vIPEiD~PGH~~~~~ 294 (415)
+.++.+..++++.|..==-|+ |-.....|.+|++++| |.|| =.|.=-
T Consensus 181 ~~~~~l~~l~Id~LViIGGdd------------------------S~~~A~~Lae~~~~~g~~i~VI---GVPKTI---- 229 (568)
T PLN02251 181 QAEETATKLDLDGLVVIGGDD------------------------SNTNACLLAEYFRAKNLKTRVI---GCPKTI---- 229 (568)
T ss_pred HHHHHHHHcCCCEEEEeCCch------------------------HHHHHHHHHHHHHhcCCCeeEE---EeCceE----
Confidence 999999999999998731111 4556778889999998 6665 223211
Q ss_pred hcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcC-CC-CeEEe
Q 014971 295 AGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIF-PF-ELFHL 339 (415)
Q Consensus 295 ~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lF-p~-~~~Hi 339 (415)
..+|... .-..++.-+.+.+++.+++++++.-- .. +++|+
T Consensus 230 --DNDL~~t---d~e~s~GFdTA~k~~a~~I~ni~~da~S~~k~~~~ 271 (568)
T PLN02251 230 --DGDLKSK---EVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHF 271 (568)
T ss_pred --eCCCCCC---cCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 1222111 01136778888888888888886532 22 57775
No 211
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=25.77 E-value=5.3e+02 Score=26.13 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=95.2
Q ss_pred cceeecCCCCCC--CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014971 199 RGLLIDTSRHYL--PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (415)
Q Consensus 199 RG~~lD~aR~~~--~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r 276 (415)
-|.+|-++|... +.+.++++++.+..++++.|..== +-=|-.-...|.++++++
T Consensus 63 gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~I~~Lv~IG------------------------Gd~s~~~a~~L~e~~~~~ 118 (338)
T cd00363 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIG------------------------GDGSYTGADLLTEEWPSK 118 (338)
T ss_pred CCeecccCCCCccCCHHHHHHHHHHHHHhCCCEEEEeC------------------------CHHHHHHHHHHHHHHHhc
Confidence 477788888443 677899999999999999988721 111566778888898888
Q ss_pred CCEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHHhhcCC-CCeEEeCCCCCCCcCCCCCHHH
Q 014971 277 GINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGDEVNTDCWSSTPHV 355 (415)
Q Consensus 277 gI~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~~~lFp-~~~~HiGgDEv~~~~w~~~p~~ 355 (415)
+.. ||-|=.|.=. ..++ .....++.-+.+.+++.+.++++..--. .++++|= |+.+. .|..+
T Consensus 119 ~~~-i~vigiPkTI------DNDl-----~~td~s~Gf~TA~~~~~~~i~~l~~~a~s~~rv~iv--EvMGR---~~G~L 181 (338)
T cd00363 119 YQG-FNVIGLPGTI------DNDI-----KGTDYTIGFDTALKTIVEAIDRIRDTASSHQRTFVV--EVMGR---HCGDI 181 (338)
T ss_pred CCC-ccEEEeeecc------cCCC-----cCcccCcCHHHHHHHHHHHHHHHHHhcccCCCEEEE--EECCc---CHHHH
Confidence 765 5555555321 1222 1223457778888888888888865332 2455544 77653 12212
Q ss_pred HH--HHHHC-CC--ChH-----HHHHHHHHHHHHHHHh-CCCeEEEeccccC
Q 014971 356 KK--WLRDH-KL--TAK-----EAYQYFVLTAQKIAIS-KNWTPVNWFVLFC 396 (415)
Q Consensus 356 ~~--~~~~~-g~--~~~-----~l~~~f~~~~~~~v~~-~g~~~~~W~d~~~ 396 (415)
.. -++.. .+ -++ +....+.+++.+..++ ++.-.++-.|.+.
T Consensus 182 al~~ala~~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~ 233 (338)
T cd00363 182 ALEAGLATGADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAI 233 (338)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Confidence 11 11111 11 011 1345666666655544 6777888888875
No 212
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=25.52 E-value=1.4e+02 Score=30.02 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCCCC--CCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 215 IKQIIESMSYAKLNVLHWHIIDEQSFP--LEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 215 lk~~id~ma~~K~N~lh~hltD~~~~~--~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
-+.+++.+|..=-|..-+-+-+ .+| +....||++. .+.|.+|+.+..+||++.|++-+.
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~--QY~P~ykA~eypeI~-------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMF--QYRPEYKAEEYPEIN-------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehh--hccchhhhhhchhhc-------ccCCHHHHHHHHHHHHHcCCceee
Confidence 4667777776543322221110 111 1123678874 468999999999999999998653
No 213
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=25.39 E-value=70 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCcccchh
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAESW 293 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~ 293 (415)
+.+++.++.+..+++|+++.+....||+..++
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~ 103 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGDPGHGKAY 103 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCCCCCcceE
Confidence 78999999999999999986555556665543
No 214
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.27 E-value=90 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchh
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESW 293 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~ 293 (415)
.-+|.+|+++.++||.++|.++.--+++.-|.+..
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~ 78 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDEL 78 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchh
Confidence 35899999999999999999999999999887653
No 215
>COG5532 Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=52 Score=31.55 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.3
Q ss_pred CCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE--------------eecCCcccch
Q 014971 240 FPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA--------------EVDVPGHAES 292 (415)
Q Consensus 240 ~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIP--------------EiD~PGH~~~ 292 (415)
||+ +.+|+|-...|+-.+..+-+-+.+.|+|-+..|=+..- -+|.|||...
T Consensus 36 ~ri--kdle~l~qnr~RfrGa~~TaSiidFvqy~K~~g~egfIdAdn~sa~iv~NlgT~~~PGh~D~ 100 (269)
T COG5532 36 WRI--KDLEELMQNRYRFRGAHDTASIIDFVQYHKQDGTEGFIDADNKSARIVINLGTQQAPGHLDF 100 (269)
T ss_pred ccc--ccHHHHhhchhhhhcccchhhHHHHHHHHhhcCcceeeecccceeEEEEecCcccCCCcccc
Confidence 666 57888765567777888899999999999998865432 2678999875
No 216
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.14 E-value=2e+02 Score=27.53 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
.....++++.++..+.+.+-+|.. ++| +.++..+++++|+++|+++++++.-
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dl-----p~e------------------~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDL-----LID------------------YPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCC-----CCC------------------cHHHHHHHHHHHHHcCCCEEEEECC
Confidence 345678899999999999998731 111 2468899999999999999999944
No 217
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=25.06 E-value=3.4e+02 Score=25.14 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCccc
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~ 290 (415)
+.+.+++++ ...+...+++++....+-.+ .+.| |+++++.+=++-+++ |++|...|.
T Consensus 63 ~~~~l~~~l---~~~~~~~Iyl~f~~~~~~y~--~~~P-------------~Re~F~~~Y~~l~~~-----~~~~l~~~~ 119 (195)
T PF10141_consen 63 SLEQLKELL---QQQQPERIYLLFYQQDSAYF--EGMP-------------TREQFKKLYKFLKQH-----PNFDLKEQL 119 (195)
T ss_pred CHHHHHHHH---HhCCcceEEEEECCccchhh--cCCC-------------CHHHHHHHHHHHHhC-----CCCCHHHHH
Confidence 577788777 47888888888854332112 1222 899999999999887 778888886
Q ss_pred chhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHH
Q 014971 291 ESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDL 328 (415)
Q Consensus 291 ~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~ 328 (415)
..+.+. +. -++++..|+-+|+-|+
T Consensus 120 ~~La~~-------------l~-i~~~~l~fml~VF~EL 143 (195)
T PF10141_consen 120 QALAKY-------------LG-ISPDTLKFMLKVFFEL 143 (195)
T ss_pred HHHHHH-------------HC-cCHHHHHHHHHHHHHc
Confidence 655431 11 2678889999999887
No 218
>PRK05764 aspartate aminotransferase; Provisional
Probab=25.04 E-value=1.1e+02 Score=30.74 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+..++.+++++|++.|+++|+-||-
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4568999999999999999998774
No 219
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.63 E-value=6.2e+02 Score=24.15 Aligned_cols=133 Identities=12% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccchh
Q 014971 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESW 293 (415)
Q Consensus 214 ~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~~~ 293 (415)
.+.+.++.++..++-.+.+.+.+... + . ....++.+++++|.+.++++||+|.-- .+.+|...
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~-------~--~------~~~~~~~~~~~~l~~~l~~~gl~i~~~-~~~~~~~~- 84 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDE-------R--L------ARLDWSREQRLALVNALVETGFRVNSM-CLSAHRRF- 84 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcccc-------c--h------hccCCCHHHHHHHHHHHHHcCCceeEE-eccccccc-
Confidence 56788999999999999886532110 0 0 112368899999999999999988642 23344210
Q ss_pred hhcCCCCCCCCCCCCcCCC-CChhHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCcCCCCC-HHHHHHHHHCCCChHHHHH
Q 014971 294 GAGYPNLWPSPSCREPLDV-SKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSST-PHVKKWLRDHKLTAKEAYQ 371 (415)
Q Consensus 294 ~~~~p~l~~~~~~~~~ld~-~~~~t~~fl~~l~~E~~~lFp~~~~HiGgDEv~~~~w~~~-p~~~~~~~~~g~~~~~l~~ 371 (415)
+ + ...|+ ..++..+.++..++... .+..+++-+++.+... ... +. ..+.+.
T Consensus 85 ----~-~-------~~~~~~~r~~~~~~~~~~i~~a~-~lG~~~i~~~~~~~~~---~~~~~~-----------~~~~~~ 137 (283)
T PRK13209 85 ----P-L-------GSEDDAVRAQALEIMRKAIQLAQ-DLGIRVIQLAGYDVYY---EQANNE-----------TRRRFI 137 (283)
T ss_pred ----C-C-------CCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEECCccccc---cccHHH-----------HHHHHH
Confidence 0 0 00011 12345556666665444 4556677666543211 111 11 012344
Q ss_pred HHHHHHHHHHHhCCCeEEE
Q 014971 372 YFVLTAQKIAISKNWTPVN 390 (415)
Q Consensus 372 ~f~~~~~~~v~~~g~~~~~ 390 (415)
..++.+.++++++|.+...
T Consensus 138 ~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 138 DGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHhCCEEEE
Confidence 5566677777777765544
No 220
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=24.48 E-value=6e+02 Score=27.74 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=67.5
Q ss_pred ce-eecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 014971 200 GL-LIDTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG 277 (415)
Q Consensus 200 G~-~lD~aR~~-~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rg 277 (415)
|+ ||-++|.- .+.+.+++.++.+..++++.|..==-| =|-.....|.+|++++|
T Consensus 133 G~~~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGd------------------------gS~~~A~~Lae~~~~~g 188 (539)
T TIGR02477 133 GFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGD------------------------DSNTNAALLAEYFAKHG 188 (539)
T ss_pred CchhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc------------------------hHHHHHHHHHHHHHhcC
Confidence 65 89999964 467889999999999999999873111 14556678899999888
Q ss_pred --CEEEEeecCCcccchhhhcCCCCCCCCCCCCcCCCCChhHHHHHHHHHHHH-hhcCCC-CeEEe
Q 014971 278 --INVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDL-RKIFPF-ELFHL 339 (415)
Q Consensus 278 --I~vIPEiD~PGH~~~~~~~~p~l~~~~~~~~~ld~~~~~t~~fl~~l~~E~-~~lFp~-~~~Hi 339 (415)
|.|| =.|+=. ..+|.. .....++.-+.+.+++.++++++ .+.-.+ +++|+
T Consensus 189 ~~i~VI---GIPkTI------DNDl~~---~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~ 242 (539)
T TIGR02477 189 LKTQVI---GVPKTI------DGDLKN---QFIETSFGFDTACKIYSELIGNICRDALSAKKYWHF 242 (539)
T ss_pred CCceEE---EEeeee------cCCCCC---CCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 5443 233211 122210 01234577788888888888888 333322 45664
No 221
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.98 E-value=2.5e+02 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCccc
Q 014971 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (415)
Q Consensus 214 ~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~ 290 (415)
-+.++++.++..+.+-+++- .| ..+|.+++++.|+++|+..|+-+ +|.-.
T Consensus 105 G~e~f~~~~~~aGvdGviip---------------DL-----------p~ee~~~~~~~~~~~gl~~I~lv-ap~t~ 154 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP---------------DL-----------PPEEAEELRAAAKKHGLDLIFLV-APTTT 154 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC---------------CC-----------CHHHHHHHHHHHHHcCCcEEEEe-CCCCC
Confidence 45789999999999988882 22 34799999999999999999877 66553
No 222
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.79 E-value=1.7e+02 Score=30.00 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+.+.++++.+.+...+ |..|+++.--. .+|.- .-..-++++++++.++.+++||.+..-
T Consensus 266 s~e~a~~La~~l~~l~-~~~~VnLIPyn-------p~~~~------~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 266 SPEDALRLAQLIGKNK-KKFKVNLIPFN-------PDPEL------PYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CHHHHHHHHHHHhcCC-CceEEEEecCC-------CCCCC------CCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4678888888887643 33444442111 12211 112348999999999999999998765
No 223
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.41 E-value=3.9e+02 Score=27.50 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=75.6
Q ss_pred ceeEEEEECChHhHHHHHHHHHhhcccCCCCceeEeeccceEEecCCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCC
Q 014971 148 IGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKL 227 (415)
Q Consensus 148 ~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~ 227 (415)
...+.|.|...-+++.=+.-|.|-+..-.. ..+ +++ .-+|.+|| ++++++++..++
T Consensus 160 glEaHlDGqGEP~lYP~l~~lVqalk~~~~---v~v----VSm------QTng~~L~-----------~~lv~eLeeAGL 215 (414)
T COG2100 160 GLEAHLDGQGEPLLYPHLVDLVQALKEHKG---VEV----VSM------QTNGVLLS-----------KKLVDELEEAGL 215 (414)
T ss_pred CeEEEecCCCCCccchhHHHHHHHHhcCCC---ceE----EEE------eeCceecc-----------HHHHHHHHHhCC
Confidence 357899999999999999999998875321 111 122 45888886 789999999999
Q ss_pred cEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe-ecCCc
Q 014971 228 NVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE-VDVPG 288 (415)
Q Consensus 228 N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE-iD~PG 288 (415)
..+-+-+. . --|++++ .-.....|..+-+.++++|+.+-||+|+-. +=+||
T Consensus 216 dRiNlSv~-a--------LDpk~Ak-~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG 267 (414)
T COG2100 216 DRINLSVD-A--------LDPKLAK-MLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG 267 (414)
T ss_pred ceEEeecc-c--------CCHHHHH-HhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCC
Confidence 98877552 1 1244441 112345799999999999999999996532 22555
No 224
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=23.27 E-value=47 Score=35.26 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE-------------eecCCcccchhhhcC
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMA-------------EVDVPGHAESWGAGY 297 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIP-------------EiD~PGH~~~~~~~~ 297 (415)
.+..++.|- .+.-++|||-|.- .+|+|||...-..-|
T Consensus 50 ~~~~a~SDW---M~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTY 99 (528)
T COG4108 50 SGKHAKSDW---MEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTY 99 (528)
T ss_pred CCcccccHH---HHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHH
Confidence 445666665 4456899997654 489999987643333
No 225
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.05 E-value=3.5e+02 Score=27.67 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=50.7
Q ss_pred cCCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHH
Q 014971 192 DKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVS 271 (415)
Q Consensus 192 D~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~ 271 (415)
|+|.=.-|.-+.-+.++| |++.+++.++......-..+.++. .-.|.+. =|.+|+++|.+
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~iey----------vLI~GvN---------Ds~eda~~L~~ 278 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRITFEY----------VMIPGVN---------MGRENANKLVK 278 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEEEEE----------EEECCcc---------CCHHHHHHHHH
Confidence 699999999999988887 888888888866543223333322 1223332 27899999999
Q ss_pred HHHHc--CCEEEEee
Q 014971 272 FAKMR--GINVMAEV 284 (415)
Q Consensus 272 yA~~r--gI~vIPEi 284 (415)
+++.. +|++||-=
T Consensus 279 ll~~l~~kVnLIPyN 293 (342)
T PRK14465 279 IARSLDCKINVIPLN 293 (342)
T ss_pred HHhhCCCcEEEEccC
Confidence 99984 56666653
No 226
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=22.95 E-value=68 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEE
Q 014971 258 WERYTVEDAHEIVSFAKMRGINV 280 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~v 280 (415)
+..|+.+|+++|.++|+++|+.+
T Consensus 144 GtVy~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 144 GTVYPLDELEAISAVCKEHGLPL 166 (342)
T ss_pred ceecCHHHHHHHHHHHHHhCCce
Confidence 56899999999999999999866
No 227
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=22.81 E-value=71 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCEEE------------------EeecCCcccchh
Q 014971 262 TVEDAHEIVSFAKMRGINVM------------------AEVDVPGHAESW 293 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vI------------------PEiD~PGH~~~~ 293 (415)
-++|+-+=.+.-|+|||+|= =.||||||...-
T Consensus 41 m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 41 MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 34555566778899999763 349999998863
No 228
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=22.75 E-value=82 Score=32.55 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 260 ~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
.-|.+|+.+++++|.++||.|+|- .-||+.
T Consensus 38 p~s~~eV~~iv~~a~~~~~~v~pr--G~gts~ 67 (459)
T COG0277 38 PKSEEEVAAILRLANENGIPVVPR--GGGTSL 67 (459)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEE--CCCCCc
Confidence 348999999999999999999997 445543
No 229
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=1.2e+02 Score=28.35 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCeEEeCCCCCCCc--CCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHhCCCeE
Q 014971 334 FELFHLGGDEVNTD--CWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTP 388 (415)
Q Consensus 334 ~~~~HiGgDEv~~~--~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~v~~~g~~~ 388 (415)
+=|||||-||++.+ -|.-....+..|++.=.+..+.|. .+.+-++++|.+.
T Consensus 104 ~FYI~igl~gcfagvawWqP~~~ll~amR~aI~~~Pd~fr----amv~~lkkngl~l 156 (228)
T COG5587 104 SFYIQIGLDGCFAGVAWWQPASDLLRAMRQAIFDNPDSFR----AMVDPLKKNGLTL 156 (228)
T ss_pred cEEEEecCCcceeeeeeeCcHHHHHHHHHHHHhcCcHHHH----HHHhHHHhCCcee
Confidence 45999999998642 366556667667654333223332 4556666666543
No 230
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.07 E-value=1.5e+02 Score=28.04 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=39.8
Q ss_pred cceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 014971 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI 278 (415)
Q Consensus 199 RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI 278 (415)
=|+++|++.-++.-+.+.+.++. ++=...|+|+.|+.++. .| ..| .-+++++.+..++.|-
T Consensus 172 ~~i~~D~~h~~~~~e~~~~~i~~---~~~~i~~vHi~D~~~~~-----~~--G~G---------~id~~~il~~L~~~gy 232 (254)
T TIGR03234 172 LKLQYDLYHMQRMGGDLARTLAA---YAAHIGHVQIADNPGRH-----EP--GTG---------EINYRFLFAVLDRLGY 232 (254)
T ss_pred EeEeeehhhhhhhCCCHHHHHHH---hhccEeEEEeCCCCCCC-----CC--CCC---------ccCHHHHHHHHHHCCC
Confidence 57899998655544444444444 45578899999974432 11 112 1256677777777776
Q ss_pred EEEEee
Q 014971 279 NVMAEV 284 (415)
Q Consensus 279 ~vIPEi 284 (415)
+..-.+
T Consensus 233 ~g~~~~ 238 (254)
T TIGR03234 233 DGWVGL 238 (254)
T ss_pred CceEEE
Confidence 633333
No 231
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.02 E-value=79 Score=31.73 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEE
Q 014971 205 TSRHYLPVDVIKQIIESMSYAKLNVL 230 (415)
Q Consensus 205 ~aR~~~~~~~lk~~id~ma~~K~N~l 230 (415)
..+.|++.+.++++++..+..+++++
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 35779999999999999999999874
No 232
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.99 E-value=83 Score=32.66 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCccc
Q 014971 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (415)
Q Consensus 262 T~~ei~~lv~yA~~rgI~vIPEiD~PGH~ 290 (415)
|.+|+.+++++|++++|.|+|- .-||.
T Consensus 6 s~eev~~iv~~a~~~~i~v~~~--G~Gt~ 32 (413)
T TIGR00387 6 NTEQVARILKLCHEHRIPIVPR--GAGTG 32 (413)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--CCCCC
Confidence 7899999999999999999995 34443
No 233
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=21.79 E-value=1.1e+02 Score=31.00 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014971 255 YSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (415)
Q Consensus 255 ~~~~~~YT~~ei~~lv~yA~~rgI~vIPEi 284 (415)
|++++.-+...++++.++|+..|++|++--
T Consensus 166 Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~ 195 (322)
T COG2984 166 YNPGEANSVSLVEELKKEARKAGLEVVEAA 195 (322)
T ss_pred eCCCCcccHHHHHHHHHHHHHCCCEEEEEe
Confidence 456677799999999999999999999864
No 234
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=21.75 E-value=1.2e+02 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC--CEEEE
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG--INVMA 282 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rg--I~vIP 282 (415)
....+.+.+.+.|+.++.......++.++-.+ |-| +...+++.++++++++++ +.|.-
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGE---------Pll---------~~~~~~l~~~i~~~~~~~~~~~i~i 85 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGGE---------PLL---------YLNPEDLIELIEYLKERGPEIKIRI 85 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESSS---------GGG---------STTHHHHHHHHCTSTT-----EEEE
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECCC---------Ccc---------ccCHHHHHHHHHHHHhhCCCceEEE
Confidence 45678999999999999988887778776432 332 135789999999999999 66643
No 235
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.64 E-value=1.1e+02 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
..++..|+++|++.|+++|+-||-.
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD 185 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMD 185 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEE
Confidence 3679999999999999999977653
No 236
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=21.58 E-value=91 Score=32.62 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 266 AHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 266 i~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
+-||++.|++.||+|+-| -|||.-
T Consensus 245 lgeL~~rA~e~gVQvMVE--GPGHvP 268 (423)
T TIGR00190 245 LGELVERAREADVQCMVE--GPGHVP 268 (423)
T ss_pred HHHHHHHHHHcCCeEEEE--CCCCCc
Confidence 345788999999999977 899984
No 237
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=21.55 E-value=2.9e+02 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
+..++.+++++|++.|+++|+.+|-.
T Consensus 146 G~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 146 GAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred CcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 45689999999999999999987743
No 238
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.48 E-value=2.2e+02 Score=26.93 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=44.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCC--CccccCCCCCCCCCHHHHHHHHHHHHH
Q 014971 198 FRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP--NLWKGAYSKWERYTVEDAHEIVSFAKM 275 (415)
Q Consensus 198 ~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P--~l~~g~~~~~~~YT~~ei~~lv~yA~~ 275 (415)
.=|+++|++.-++.-....+.++.+.. -..|+|+.|..+-+...-..+ .+..| .+ .=|++++.+..++
T Consensus 171 ~v~~~lD~~H~~~~~~d~~~~~~~~~~---rI~hvH~kD~~~~~~~~~~~~~~~~~pG----~G---~id~~~i~~~L~~ 240 (274)
T COG1082 171 NVGLLLDTGHAFFAGEDPLEAIRKLGD---RIGHVHLKDADGPTLDIVNFLGQHLPPG----DG---DIDFKAIFSALRE 240 (274)
T ss_pred ceEEEEecCchhhccCCHHHHHHHhhc---ceeEEEEeecCcchhcccCCCcceeCCC----CC---CcCHHHHHHHHHH
Confidence 458999999877663333333333333 677899988864322200000 11111 11 1258888888888
Q ss_pred cCCE--EEEeecC
Q 014971 276 RGIN--VMAEVDV 286 (415)
Q Consensus 276 rgI~--vIPEiD~ 286 (415)
.|.+ ++-|+..
T Consensus 241 ~gy~g~~~iE~~~ 253 (274)
T COG1082 241 AGYDGWLVVEVFA 253 (274)
T ss_pred cCCCceEEEEecC
Confidence 8886 5666543
No 239
>PRK01060 endonuclease IV; Provisional
Probab=21.16 E-value=2.2e+02 Score=27.34 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=25.9
Q ss_pred ceeecCCCCCCCH----HHHHHHHHHHHhCCC--cEEEEEeecCC
Q 014971 200 GLLIDTSRHYLPV----DVIKQIIESMSYAKL--NVLHWHIIDEQ 238 (415)
Q Consensus 200 G~~lD~aR~~~~~----~~lk~~id~ma~~K~--N~lh~hltD~~ 238 (415)
|+.+|++.-+..- +...++++.+...-- ...|+|+.|..
T Consensus 175 g~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~ 219 (281)
T PRK01060 175 GVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSK 219 (281)
T ss_pred EEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCC
Confidence 8999998655432 334477777765433 56788888864
No 240
>PRK10426 alpha-glucosidase; Provisional
Probab=21.08 E-value=2.9e+02 Score=30.64 Aligned_cols=127 Identities=14% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCC-CCCCCCHHHHHHHHH
Q 014971 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYS-KWERYTVEDAHEIVS 271 (415)
Q Consensus 193 ~P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~-~~~~YT~~ei~~lv~ 271 (415)
-|++.++|+++... -+-+.++++++.+...++-.=.+++.|-++.+.. ++..-..+.|. ....|. |.+++++
T Consensus 204 ~P~Wal~G~~~g~~---~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~--~~g~~~~~~~~~d~~~FP--dp~~mi~ 276 (635)
T PRK10426 204 LPDWAYDGVTLGIQ---GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMT--SFGKRLMWNWKWDSERYP--QLDSRIK 276 (635)
T ss_pred CChhhccCcccccc---CCHHHHHHHHHHHHHcCCCeeEEEEecccccccc--cccccccccceEChhhCC--CHHHHHH
Confidence 47888889886421 2467899999999999877555555332322221 11100000010 111222 5788999
Q ss_pred HHHHcCCEEEEeecCCccc-c--hhhh--cCCCCCCC-----------CCCCCcCCCCChhHHHHHHHHHHH
Q 014971 272 FAKMRGINVMAEVDVPGHA-E--SWGA--GYPNLWPS-----------PSCREPLDVSKNFTFEVISGILSD 327 (415)
Q Consensus 272 yA~~rgI~vIPEiD~PGH~-~--~~~~--~~p~l~~~-----------~~~~~~ld~~~~~t~~fl~~l~~E 327 (415)
.-+++|++++.-|| |+=. . .... ..--+..+ +.....+|.+||++.+..++.+++
T Consensus 277 ~L~~~G~k~v~~i~-P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYIN-PYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEc-CccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999999886 4311 1 0110 00001000 011236899999999999888764
No 241
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=21.03 E-value=5.3e+02 Score=26.48 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCEEE
Q 014971 258 WERYTVEDAHEIVSFAKMR-GINVM 281 (415)
Q Consensus 258 ~~~YT~~ei~~lv~yA~~r-gI~vI 281 (415)
+..+|.++.++|++.|+++ ++-||
T Consensus 226 G~~~s~~~~~~l~~la~~~~~~~ii 250 (431)
T PRK15481 226 GCSLSARRAAALRNLLARYPQVLVI 250 (431)
T ss_pred CccCCHHHHHHHHHHHHhcCCceEE
Confidence 4579999999999999999 87666
No 242
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.99 E-value=3.5e+02 Score=24.73 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCc
Q 014971 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (415)
Q Consensus 218 ~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PG 288 (415)
.++.+...+.+.+-.|... +...+.+++++|+++|+.+++++-.|+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-------------------------~~~~~~~~i~~~~~~g~~~~~~~~~~~ 113 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-------------------------DDATIKGAVKAAKKHGKEVQVDLINVK 113 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-------------------------CHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 5777888888877777521 234689999999999999999874554
No 243
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.97 E-value=3.7e+02 Score=27.35 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE--EEEeecCCCCCCCCCCCCC-------ccccC--C--CCCCCCCHHHHHHHHHHHHHcC
Q 014971 211 PVDVIKQIIESMSYAKLNVL--HWHIIDEQSFPLEVPTYPN-------LWKGA--Y--SKWERYTVEDAHEIVSFAKMRG 277 (415)
Q Consensus 211 ~~~~lk~~id~ma~~K~N~l--h~hltD~~~~~~e~~~~P~-------l~~g~--~--~~~~~YT~~ei~~lv~yA~~rg 277 (415)
+++.-|++||..+..+...+ |.+..|.- - .+..+. .|.|. | -..-.++.+++++|.+||++.|
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDL--V--SKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHh--h--CcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 68999999999999998854 44332221 0 111111 11110 0 0112478999999999999999
Q ss_pred CEEEEeecCCcccch
Q 014971 278 INVMAEVDVPGHAES 292 (415)
Q Consensus 278 I~vIPEiD~PGH~~~ 292 (415)
|.++-+.=-..+.+.
T Consensus 90 i~~~stpfd~~svd~ 104 (329)
T TIGR03569 90 IEFLSTPFDLESADF 104 (329)
T ss_pred CcEEEEeCCHHHHHH
Confidence 999988644444443
No 244
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=20.88 E-value=1.1e+02 Score=33.15 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=34.3
Q ss_pred EEEeecCCCCCCCCCCCCCccccC---------CCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 014971 231 HWHIIDEQSFPLEVPTYPNLWKGA---------YSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (415)
Q Consensus 231 h~hltD~~~~~~e~~~~P~l~~g~---------~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~ 286 (415)
|+|+.|. ||-+.++-+|-|..|- |+.+ . .-+.++..-.||++|||- -|.|+.
T Consensus 372 ~l~lvDa-g~~~N~p~ppllrP~R~VDlIisfd~Sa~-~-~~~~L~~~~~y~~~~gIp-fPk~~~ 432 (541)
T cd07201 372 HLCLVDT-AFFINTSYPPLLRPERKVDVILSLNYSLG-S-QFEPLKQASEYCSEQGIP-FPKIEL 432 (541)
T ss_pred ceeeeec-ccccCCCCCcccCCCCcccEEEEeccccC-C-cchHHHHHHHHHHHcCCC-CCCCCC
Confidence 3666654 6667666666665321 2222 2 677899999999999998 566654
No 245
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.84 E-value=2.6e+02 Score=27.28 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=38.1
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHH
Q 014971 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFA 273 (415)
Q Consensus 194 P~f~~RG~~lD~aR~~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA 273 (415)
||-.--=.++|-+ +++..++.+++.++.| +..+ ++. +.....|..+-+++.++.|
T Consensus 9 PR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y-ID~~------------------K~g---~Gt~~l~~~~~l~eki~l~ 63 (244)
T PF02679_consen 9 PRSRGLTMVIDKG---LGLRYLEDLLESAGDY-IDFL------------------KFG---WGTSALYPEEILKEKIDLA 63 (244)
T ss_dssp S-SSS-EEEEESS-----HHHHHHHHHHHGGG--SEE------------------EE----TTGGGGSTCHHHHHHHHHH
T ss_pred CCCCCcEEEecCC---CCHHHHHHHHHHhhhh-ccEE------------------Eec---CceeeecCHHHHHHHHHHH
Confidence 4443333477776 9999999999999876 1111 111 1123456777788888888
Q ss_pred HHcCCEEEE
Q 014971 274 KMRGINVMA 282 (415)
Q Consensus 274 ~~rgI~vIP 282 (415)
+++||.|.|
T Consensus 64 ~~~gV~v~~ 72 (244)
T PF02679_consen 64 HSHGVYVYP 72 (244)
T ss_dssp HCTT-EEEE
T ss_pred HHcCCeEeC
Confidence 888888854
No 246
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.52 E-value=3.3e+02 Score=20.05 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 014971 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVD 285 (415)
Q Consensus 214 ~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD 285 (415)
.+.++++.....|++.+=+ ||-. +-....++.+++++.||.+||-++
T Consensus 16 ~~~~~~~~a~~~g~~~v~i--TDh~-----------------------~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI--TDHG-----------------------NLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE--eeCC-----------------------cccCHHHHHHHHHHcCCeEEEEEE
Confidence 4678888888888887654 4431 111234666778889999999554
No 247
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=20.32 E-value=4.1e+02 Score=30.27 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeec--------CCCCCCCC--CCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014971 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIID--------EQSFPLEV--PTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (415)
Q Consensus 207 R~~~~~~~lk~~id~ma~~K~N~lh~hltD--------~~~~~~e~--~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~r 276 (415)
|+-|+.+.-+.+++.++.+++. |++++- .+|+.+-= .--|+| | ..+=+..|++-++++
T Consensus 13 ~~gFtF~~A~~~l~yl~~LGIS--hLY~SPIftA~pGStHGYDVvD~t~InPeL--G--------G~egl~rLvaalk~~ 80 (889)
T COG3280 13 RGGFTFADARALLDYLADLGIS--HLYLSPIFTARPGSTHGYDVVDPTEINPEL--G--------GEEGLERLVAALKSR 80 (889)
T ss_pred cCCCCHHHHHHhhHHHHhcCch--heeccchhhcCCCCCCCccCCCccccChhh--c--------ChHHHHHHHHHHHhc
Confidence 4467888889999999999998 555431 12221110 011222 1 467799999999999
Q ss_pred CCEEEEeecCCcccch
Q 014971 277 GINVMAEVDVPGHAES 292 (415)
Q Consensus 277 gI~vIPEiD~PGH~~~ 292 (415)
|.-+|-.| .|-||..
T Consensus 81 GlGlI~DI-VPNHMav 95 (889)
T COG3280 81 GLGLIVDI-VPNHMAV 95 (889)
T ss_pred CCceEEEe-cccchhc
Confidence 99999999 9999874
No 248
>PRK15447 putative protease; Provisional
Probab=20.30 E-value=2.9e+02 Score=27.45 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014971 209 YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (415)
Q Consensus 209 ~~~~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPE 283 (415)
++|-..+..+...++..+...+.+-. +.| +.+..+|.+|+++++++|+++|.+|+-.
T Consensus 11 ~~p~~~~~~~~~~~~~~gaDaVY~g~---~~~---------------~~R~~f~~~~l~e~v~~~~~~gkkvyva 67 (301)
T PRK15447 11 YWPKETVRDFYQRAADSPVDIVYLGE---TVC---------------SKRRELKVGDWLELAERLAAAGKEVVLS 67 (301)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECC---ccC---------------CCccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 56677777788888887887776632 111 1122479999999999999999998543
No 249
>PRK15452 putative protease; Provisional
Probab=20.25 E-value=1.3e+02 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 259 ~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
.-+|.+|+++.++||+++|++|..-+++.-|-.
T Consensus 41 ~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~ 73 (443)
T PRK15452 41 NEFNHENLALGINEAHALGKKFYVVVNIAPHNA 73 (443)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH
Confidence 347889999999999999999999888777654
No 250
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.16 E-value=7.1e+02 Score=23.17 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCcccc
Q 014971 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (415)
Q Consensus 212 ~~~lk~~id~ma~~K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIPEiD~PGH~~ 291 (415)
++.+.+.++.....++.+ .+.++| ...++.+++.++++.+.+.|++.|---||-|.+.
T Consensus 107 ~~~~~~~v~~ak~~g~~v-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~ 164 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV-AFGCED---------------------ASRTDPEELLELAEALAEAGADIIYLADTVGIMT 164 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE-EEEETT---------------------TGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-
T ss_pred HHHHHHHHHHHHhcCCce-EeCccc---------------------cccccHHHHHHHHHHHHHcCCeEEEeeCccCCcC
Confidence 455566677777777776 333322 2357899999999999999999999999999644
No 251
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.12 E-value=2.3e+02 Score=29.34 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhC--CCcEEEEEeecCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014971 211 PVDVIKQIIESMSYA--KLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (415)
Q Consensus 211 ~~~~lk~~id~ma~~--K~N~lh~hltD~~~~~~e~~~~P~l~~g~~~~~~~YT~~ei~~lv~yA~~rgI~vIP 282 (415)
+.+.++++++.+... ++|.+-+|. ++.. .| ..-+++++.++.++.+++||.|..
T Consensus 276 s~e~a~~La~ll~~l~~~VnLIPYN~------------~~~~---~~---~~ps~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 276 GTEHAHQLAELLKDTPCKINLIPWNP------------FPGA---PY---GRSSNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CHHHHHHHHHHHhcCCceEEEecCCC------------CCCC---CC---CCCCHHHHHHHHHHHHHCCCeEEE
Confidence 467778888877765 455554442 1111 11 235899999999999999999875
Done!