Query 014973
Match_columns 415
No_of_seqs 199 out of 413
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 7.6E-29 2.6E-33 194.1 7.2 61 262-323 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 88.7 1.1 3.8E-05 35.5 6.6 49 264-318 15-63 (79)
3 2cu7_A KIAA1915 protein; nucle 87.0 1.8 6.1E-05 33.1 6.7 53 263-321 5-57 (72)
4 2yum_A ZZZ3 protein, zinc fing 82.2 2.5 8.4E-05 32.3 5.5 53 265-320 6-61 (75)
5 2hzd_A Transcriptional enhance 79.2 2.8 9.7E-05 34.3 5.1 57 264-322 3-76 (82)
6 1x41_A Transcriptional adaptor 73.5 4.8 0.00016 29.7 4.6 50 264-319 5-55 (60)
7 2elk_A SPCC24B10.08C protein; 71.8 5.9 0.0002 29.2 4.7 47 267-318 9-56 (58)
8 2cqq_A RSGI RUH-037, DNAJ homo 70.3 13 0.00044 29.0 6.6 46 269-320 10-58 (72)
9 2xag_B REST corepressor 1; ami 65.7 9.5 0.00033 39.6 6.4 54 264-323 377-430 (482)
10 2cqr_A RSGI RUH-043, DNAJ homo 64.1 36 0.0012 26.6 8.1 50 266-318 17-67 (73)
11 2iw5_B Protein corest, REST co 61.5 13 0.00045 35.5 6.1 51 264-320 130-180 (235)
12 2yqk_A Arginine-glutamic acid 60.3 8.8 0.0003 28.9 3.8 48 261-313 3-50 (63)
13 1ity_A TRF1; helix-turn-helix, 54.9 49 0.0017 24.7 7.2 52 262-317 5-57 (69)
14 2eqr_A N-COR1, N-COR, nuclear 53.8 14 0.00048 27.4 3.9 48 260-313 5-52 (61)
15 2dim_A Cell division cycle 5-l 52.4 47 0.0016 24.8 6.7 51 262-317 4-54 (70)
16 2kes_A Synphilin-1; synphillin 49.6 14 0.00048 27.4 3.2 25 365-389 15-43 (48)
17 2d9a_A B-MYB, MYB-related prot 48.6 61 0.0021 23.4 6.6 50 263-317 4-53 (60)
18 3sjm_A Telomeric repeat-bindin 47.3 48 0.0016 24.9 6.1 48 263-313 7-54 (64)
19 1wgx_A KIAA1903 protein; MYB D 45.0 30 0.001 27.4 4.8 46 269-317 10-56 (73)
20 1guu_A C-MYB, MYB proto-oncoge 38.4 82 0.0028 22.0 5.8 46 267-317 3-48 (52)
21 4eef_G F-HB80.4, designed hema 37.4 10 0.00035 30.6 0.9 44 269-315 22-66 (74)
22 2cjj_A Radialis; plant develop 30.4 70 0.0024 26.1 4.9 47 269-318 10-57 (93)
23 1w0t_A Telomeric repeat bindin 29.6 1.4E+02 0.0049 21.0 5.9 46 267-316 2-48 (53)
24 1gvd_A MYB proto-oncogene prot 26.8 1.5E+02 0.0051 20.7 5.6 46 267-317 3-48 (52)
25 2crg_A Metastasis associated p 24.4 70 0.0024 24.5 3.6 47 263-314 4-50 (70)
26 2li6_A SWI/SNF chromatin-remod 24.3 19 0.00065 29.9 0.4 45 272-319 49-97 (116)
27 2lm1_A Lysine-specific demethy 22.0 45 0.0015 26.9 2.3 45 272-317 44-94 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=7.6e-29 Score=194.13 Aligned_cols=61 Identities=51% Similarity=0.758 Sum_probs=57.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhhccC
Q 014973 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (415)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 323 (415)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+..++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999996 799999999999999999999999999999997654
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.71 E-value=1.1 Score=35.54 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhh
Q 014973 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (415)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 318 (415)
...+-.||+|=+++|++||.++|+ .=+.|-+.|+ +=|..+++.|-++|-
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 344678999999999999999974 3366777764 799999999998873
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.04 E-value=1.8 Score=33.10 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=41.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhhc
Q 014973 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321 (415)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k 321 (415)
+...+-.||+|=++.|+++|.++|- .=+.|-+.| +|=|-.+|+.|-++|-..+
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 3445668999999999999999963 335566654 7899999999999885543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.22 E-value=2.5 Score=32.34 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCchH---HHHhhcCCCCccHHHHHHHHhhhhhh
Q 014973 265 KPRMRWTPELHECFVEAVNKLDGPEKATPK---AVLKLMNVEGLTIYHVKSHLQKYRLA 320 (415)
Q Consensus 265 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~ 320 (415)
..+-.||+|=+++|++||.++| .+...|. .|-+.| +|=|-.+|+.|-++|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 3455799999999999999996 3332233 344444 789999999999998654
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=79.24 E-value=2.8 Score=34.26 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=36.7
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHh---hc-C-------------CCCccHHHHHHHHhhhhhhcc
Q 014973 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK---LM-N-------------VEGLTIYHVKSHLQKYRLAKY 322 (415)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-------------V~GLT~~hVKSHLQKYRl~k~ 322 (415)
.+..-.|.++|-..|++|++..--....+- +|. .| | -+-=|+.+|.||||.-|..+.
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~--~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKI--ILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCC--CHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccce--eecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 445668999999999999987631112222 121 11 1 134578889999998776543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.51 E-value=4.8 Score=29.74 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=39.0
Q ss_pred CCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHHhhhhh
Q 014973 264 HKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 (415)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 319 (415)
.-.|-.||+|=.+++++||.++| + .=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFG----NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTT----CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcC----cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566799999999999999997 3 235566666 67899999998887644
No 7
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=71.78 E-value=5.9 Score=29.19 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=35.4
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHHhhhh
Q 014973 267 RMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (415)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 318 (415)
+-.||+|=.+++++||.+.| |- =+.|-+.|+. |=|-.+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45699999999999999997 42 3455555531 678888888877764
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=70.28 E-value=13 Score=29.05 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHH---HHhhcCCCCccHHHHHHHHhhhhhh
Q 014973 269 RWTPELHECFVEAVNKLDGPEKATPKA---VLKLMNVEGLTIYHVKSHLQKYRLA 320 (415)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~ 320 (415)
.||.|=+++|+.|+.++++ -||.+ |-+.| |=|..+|+.|-+++.-.
T Consensus 10 ~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 6999999999999999952 35654 44455 68999999998876443
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=65.73 E-value=9.5 Score=39.65 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhhccC
Q 014973 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323 (415)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 323 (415)
.|..-+||.|=|..|++|+.+.|- .=+.|-++++- =|..+|++|-++||....+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 456789999999999999999963 35667777765 4999999999999886443
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=64.08 E-value=36 Score=26.58 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=39.4
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-CCCCccHHHHHHHHhhhh
Q 014973 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLM-NVEGLTIYHVKSHLQKYR 318 (415)
Q Consensus 266 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~GLT~~hVKSHLQKYR 318 (415)
.+-.||.+=.++|++||..+|. -+|.+--++- -|+|=|-.+|+.|-+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3446999999999999999962 2777665543 368999999999988764
No 11
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=61.54 E-value=13 Score=35.50 Aligned_cols=51 Identities=25% Similarity=0.399 Sum_probs=42.1
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhh
Q 014973 264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (415)
Q Consensus 264 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 320 (415)
.|..-+||+|=++.|++|+.+.|- + =..|-++ |++=|..+|+.|-.+||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 466789999999999999999962 2 4566666 5789999999999999864
No 12
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.28 E-value=8.8 Score=28.92 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHH
Q 014973 261 ATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (415)
Q Consensus 261 ~~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 313 (415)
..+...+-.||+|=|+.|.+|+.+.| -+ =..|-+.| |+.=|..+|..+
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 34555667999999999999999995 22 23333311 566777776543
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=54.94 E-value=49 Score=24.72 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 014973 262 TAHKPRMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (415)
..++.|-.||+|=-++.+++|.++| | .=+.|.+.|+..|=|-.+++.+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS----CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC----cHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 3577888999999999999999997 3 23677777865577888888765554
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.78 E-value=14 Score=27.43 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=35.2
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHH
Q 014973 260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (415)
Q Consensus 260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 313 (415)
+...++..-.||+|=|+.|++|+.+.|- + =..|-+. ++|=|..+|.-|
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHH
Confidence 4456677889999999999999999962 1 2445444 567888887644
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.42 E-value=47 Score=24.81 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 014973 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (415)
.+...|=.||+|=-++++++|.++|. ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34556678999999999999999971 13366666764 78888888776665
No 16
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=49.60 E-value=14 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHH----HhhhhhhhHHHHHhhh
Q 014973 365 EVQKQLHEQ----LESKRDELIIVYAKAQ 389 (415)
Q Consensus 365 EVQkrLHEQ----LEVQR~LQlRIEAq~~ 389 (415)
.+-|+|+|| +.+|.+||.-+|+|-.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k~ 43 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQKS 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566788887 6789999999999854
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=48.65 E-value=61 Score=23.42 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 014973 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (415)
+...|-.||+|=.++++++|.++|. . .=+.|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999961 1 224555554 677888888776654
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=47.35 E-value=48 Score=24.94 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHH
Q 014973 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSH 313 (415)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 313 (415)
..+.|-.||+|=-++.+++|.+.|. . .=+.|.+.+.+.|=|-.+++-+
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 3445678999999999999999962 1 2456777777778787777653
No 19
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=45.00 E-value=30 Score=27.41 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhh-cCCCCccHHHHHHHHhhh
Q 014973 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKL-MNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~GLT~~hVKSHLQKY 317 (415)
.||.+=.++|.+|+..++ +.+|-+--++ .-|+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999993 5588876553 347899999999887665
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=38.39 E-value=82 Score=22.00 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 014973 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (415)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999963 1235565555 578888888776654
No 21
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.41 E-value=10 Score=30.59 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC-CCCccHHHHHHHHh
Q 014973 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLMN-VEGLTIYHVKSHLQ 315 (415)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQ 315 (415)
.||.+=.+.|..|+... .+-||.+--++-. |+|=|.+.|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~y---p~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFT---NKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSS---CSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHC---CCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 49999999999999988 3557776655433 78999999999865
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=30.44 E-value=70 Score=26.09 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhh-cCCCCccHHHHHHHHhhhh
Q 014973 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKL-MNVEGLTIYHVKSHLQKYR 318 (415)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~GLT~~hVKSHLQKYR 318 (415)
.||.|=.+.|++|+.++| .+ +|.+--++ .-|+|=|-.+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~-~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD-KD--TPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC-TT--CTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999995 22 56543332 2257999999999988764
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=29.62 E-value=1.4e+02 Score=20.98 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=34.1
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHHhh
Q 014973 267 RMRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQK 316 (415)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQK 316 (415)
|-.||+|=.+..+++|.+.| | .=+.|.+.|+..|=|-.+++-+-..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45799999999999999997 3 2356777776546777777765433
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=26.75 E-value=1.5e+02 Score=20.66 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=33.4
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 014973 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (415)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (415)
|-.||+|=.++++++|.++|. . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999962 1 123455554 677888888776654
No 25
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.40 E-value=70 Score=24.51 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHH
Q 014973 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHL 314 (415)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 314 (415)
.++..-.||+|=++.|.+|+...| -+ =..|-+. -|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 456777999999999999999995 22 2333331 15677777776554
No 26
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.25 E-value=19 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCccHHHHHHHHhhhhh
Q 014973 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLTIYHVKSHLQKYRL 319 (415)
Q Consensus 272 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT~~hVKSHLQKYRl 319 (415)
-+|++-|.. |..+||.++.+- +.|.+.||++. -..++.|=.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 578877765 788999887653 46788999987 5677887777643
No 27
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.99 E-value=45 Score=26.93 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCch----HHHHhhcCCCCcc--HHHHHHHHhhh
Q 014973 272 PELHECFVEAVNKLDGPEKATP----KAVLKLMNVEGLT--IYHVKSHLQKY 317 (415)
Q Consensus 272 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKY 317 (415)
-+|++-|.. |..+||.++.+- +.|.+.||++.-| -..++.|=.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 578888876 678999987654 3678889987633 23456655555
Done!