BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014974
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 225/393 (57%), Gaps = 17/393 (4%)
Query: 22 HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
++SP EVI+ N +YCHLLCGL + + S +A ++ A ++ WE+LC ++
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246
Query: 82 ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
+G+ +T++ ++SV VLGGP+P+L+ I IC +++W GI +LWPN +YI+ V
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306
Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
TGSM QY + YY ++P++ Y +SE GINLD P+ + +P +YFEF+P
Sbjct: 307 TGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIP 366
Query: 202 FD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFV 260
D +KN+ VD V++G YE VVT + G YR R+GDIV V FYN++PQ +FV
Sbjct: 367 MDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFV 421
Query: 261 MRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 317
R + +E DL A+ +++L + +++ +F Y + + P ++++E+
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEV 480
Query: 318 --REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDR 370
+EG K + L CC +E++ ++YK R + G I PL + +V+ GTFD
Sbjct: 481 DTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 371 LLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 403
L+ I +GA QYK P+ +++ + ++ +E C
Sbjct: 541 LMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 217/387 (56%), Gaps = 9/387 (2%)
Query: 22 HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
++SP E I+ ++ MY +LCG+ + + + + +A GL+ A F + W QL D+
Sbjct: 193 YTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDI 252
Query: 82 ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
G IT+ ++R+ V VL P P+L+ + C + NW GI +++WPN +Y+ +
Sbjct: 253 RTGTLSPKITDPSVRNCVAGVLK-PDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIV 311
Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
TG+M+QY + YY+G +P+ Y +SECY G+NL+ P + ++P AYFEFLP
Sbjct: 312 TGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLP 371
Query: 202 FDMEK---NEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVE 258
+ + VD + VE+GK YE+V+TTY G YRYR+GDI++V F+NS+PQ
Sbjct: 372 HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFH 431
Query: 259 FVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFV 315
FV R + E +L A+++ +LR V +VE+ + + ++ P +I+
Sbjct: 432 FVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREV-NTSVVEYTSFADTKTIPGHYVIYW 490
Query: 316 EIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQV 374
E+ + S +L +CC ++E++ S+Y+ R I PL + +VK GTF+ L+
Sbjct: 491 ELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDY 550
Query: 375 AIEKGAPASQYKPPKIVRNREIVEFME 401
AI +GA +QYK P+ V I+E ++
Sbjct: 551 AISRGASINQYKVPRCVNFTPIMELLD 577
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 220/393 (55%), Gaps = 17/393 (4%)
Query: 22 HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
++SP EVI+ N +YCHLLCGL + + S +A + A ++ WE+LC ++
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNI 246
Query: 82 ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
+G+ +T++ ++SV VLGGP+P+L+ I IC +++W GI +LWPN +YI+ V
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306
Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
TGS QY + YY ++P++ Y +SE GINLD P+ + P +YFEF+P
Sbjct: 307 TGSXGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIP 366
Query: 202 FD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFV 260
D +KN+ VD V++G YE VVT + G YR R+GDIV V FYN++PQ +FV
Sbjct: 367 XDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFV 421
Query: 261 MRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 317
R + +E DL A+ +++L + +++ +F Y + + P ++++E+
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEV 480
Query: 318 --REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDR 370
+EG K + L CC E++ ++YK R + G I PL + +V+ GTFD
Sbjct: 481 DTKEGEEKETAQFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 371 LLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 403
L I +GA QYK P+ +++ + ++ +E C
Sbjct: 541 LXDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 221/384 (57%), Gaps = 16/384 (4%)
Query: 24 SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLEN 83
SP EVI + +YCHLL G+ + + +F+ +A GL+ AF FE WE++ D+++
Sbjct: 194 SPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
Query: 84 GYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGE-SNWSGIFSKLWPNVRYIKCVTT 142
G IT ++R ++ ++L P P+L++ IR+ C SNW G+ L+PN +Y+ + T
Sbjct: 254 GVLSNRITVPSVRTAMSKLLT-PNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMT 312
Query: 143 GSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPF 202
GSM Y K+++YAG++P++ DY +SE ++ N+ P+ F ++P YFEFLP
Sbjct: 313 GSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPV 372
Query: 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMR 262
E E E+ V + V+IG+ YEVV+T Y G YRYRLGD+VKV+ FYN++PQ++F+ R
Sbjct: 373 S-ETGEG-EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICR 430
Query: 263 AP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 319
+ + +ERDL ++ES L +E+++F+ Y ++ + P IF EI
Sbjct: 431 RNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEISG 489
Query: 320 GCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEK 378
+ +L+ CC+ L+ AF + Y R I L + +V GTF ++ + +
Sbjct: 490 ETNE-----DVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGL 544
Query: 379 GAPASQYKPPKIVR--NREIVEFM 400
G+ A Q+K P+ V+ N ++++ +
Sbjct: 545 GSSAGQFKMPRCVKPSNAKVLQIL 568
>pdb|3L2E|A Chain A, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|C Chain C, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp
Length = 374
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 108 PDLSKRIRSICGESNWSGIFSKLW----PN-VRYIKCVTTGSMSQYCSKIKYYAGEVPVL 162
PDLSK + + + ++ K W PN V + KC+ TG + K+Y + +
Sbjct: 16 PDLSKHNNVMASQLTYE-LYEKYWDKVTPNGVTFDKCIQTGVDN---PGNKFYGKKTGCV 71
Query: 163 GGDYFASECY 172
GD ++ ECY
Sbjct: 72 FGDEYSYECY 81
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 189 VMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 248
VML + F F +E N EE + E+GK Y +++ R + +
Sbjct: 1 VMLQPYKHEPFTDFTVEANRKAFEEALGLVEKELGKEYPLIINGERVTTEDK-------I 53
Query: 249 DFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNV 290
+N + + + V K++ + ++E+ + SA E+FQ RNV
Sbjct: 54 QSWNPARKDQLVGSVSKAN-QDLAEKAIQSADEAFQTW-RNV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,077,657
Number of Sequences: 62578
Number of extensions: 505100
Number of successful extensions: 1031
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 12
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)