Query 014974
Match_columns 415
No_of_seqs 154 out of 549
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 6E-103 1E-107 822.3 41.4 408 2-412 173-598 (612)
2 PLN02247 indole-3-acetic acid- 100.0 1E-101 2E-106 814.5 41.6 410 2-412 161-595 (606)
3 PLN02249 indole-3-acetic acid- 100.0 4.6E-95 1E-99 769.4 42.8 398 14-412 184-587 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 2.8E-86 6E-91 699.1 31.7 347 19-397 171-527 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.6 6.6E-15 1.4E-19 150.7 18.4 233 107-394 189-435 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.6 8E-14 1.7E-18 145.0 18.0 228 107-371 183-432 (445)
7 TIGR02155 PA_CoA_ligase phenyl 99.3 3.4E-10 7.3E-15 116.5 19.5 222 108-370 175-410 (422)
8 TIGR02304 aden_form_hyp probab 99.2 6.7E-10 1.4E-14 115.3 18.8 162 108-317 195-377 (430)
9 PRK00174 acetyl-CoA synthetase 98.5 3.9E-05 8.4E-10 83.1 25.6 227 131-404 366-633 (637)
10 PRK06060 acyl-CoA synthetase; 98.4 2.8E-05 6.2E-10 85.3 20.2 146 108-283 244-410 (705)
11 TIGR02188 Ac_CoA_lig_AcsA acet 98.3 0.00018 3.9E-09 77.7 25.4 227 132-402 358-624 (625)
12 PTZ00237 acetyl-CoA synthetase 98.3 4.3E-05 9.3E-10 83.4 19.1 231 132-402 380-643 (647)
13 PRK09274 peptide synthase; Pro 98.2 0.0002 4.3E-09 75.9 22.6 158 108-283 270-465 (552)
14 PRK04319 acetyl-CoA synthetase 98.2 0.00015 3.2E-09 77.5 21.3 130 131-283 322-477 (570)
15 PRK07514 malonyl-CoA synthase; 98.2 7.8E-05 1.7E-09 77.6 18.5 132 129-283 266-422 (504)
16 PRK06334 long chain fatty acid 98.2 3.1E-05 6.8E-10 82.3 15.7 149 108-283 281-455 (539)
17 TIGR03205 pimA dicarboxylate-- 98.2 7.7E-05 1.7E-09 78.9 18.5 130 132-283 312-466 (541)
18 PRK06155 crotonobetaine/carnit 98.2 0.00011 2.3E-09 78.2 19.4 128 132-283 294-445 (542)
19 PRK06187 long-chain-fatty-acid 98.2 0.00011 2.3E-09 76.5 19.2 146 108-282 263-439 (521)
20 TIGR01734 D-ala-DACP-lig D-ala 98.2 9.1E-05 2E-09 77.1 18.4 132 130-283 256-418 (502)
21 PRK07529 AMP-binding domain pr 98.2 7.3E-05 1.6E-09 81.2 18.0 134 131-282 332-489 (632)
22 PRK13295 cyclohexanecarboxylat 98.2 8.1E-05 1.7E-09 78.9 17.7 129 131-282 311-463 (547)
23 PLN02574 4-coumarate--CoA liga 98.1 0.00012 2.5E-09 78.1 18.2 132 131-282 318-474 (560)
24 PRK03584 acetoacetyl-CoA synth 98.1 0.00039 8.4E-09 75.7 22.2 215 146-402 397-648 (655)
25 PRK05605 long-chain-fatty-acid 98.1 0.0001 2.2E-09 78.6 16.9 132 131-282 335-489 (573)
26 PRK09088 acyl-CoA synthetase; 98.1 0.0001 2.3E-09 76.6 16.5 105 158-282 276-405 (488)
27 PRK05677 long-chain-fatty-acid 98.1 0.00012 2.6E-09 77.9 17.1 129 131-282 325-477 (562)
28 PRK07788 acyl-CoA synthetase; 98.1 0.0002 4.3E-09 75.9 18.5 149 108-283 303-472 (549)
29 PRK07867 acyl-CoA synthetase; 98.1 0.00021 4.5E-09 75.8 18.6 121 141-283 273-426 (529)
30 PRK06164 acyl-CoA synthetase; 98.1 0.00022 4.8E-09 75.2 18.5 116 147-282 310-450 (540)
31 PRK07786 long-chain-fatty-acid 98.1 0.00019 4.1E-09 76.0 17.8 117 146-282 304-443 (542)
32 PRK08974 long-chain-fatty-acid 98.0 0.0002 4.4E-09 76.0 17.6 128 132-283 325-477 (560)
33 PRK04813 D-alanine--poly(phosp 98.0 0.00026 5.7E-09 73.5 18.1 131 131-283 259-420 (503)
34 PRK10524 prpE propionyl-CoA sy 98.0 0.00082 1.8E-08 72.7 22.4 129 132-283 355-518 (629)
35 PLN02654 acetate-CoA ligase 98.0 0.0028 6.1E-08 69.4 26.6 225 132-402 397-662 (666)
36 PRK07656 long-chain-fatty-acid 98.0 0.00031 6.7E-09 73.1 18.1 130 132-282 281-436 (513)
37 PRK06145 acyl-CoA synthetase; 98.0 0.00032 7E-09 73.0 18.0 130 132-283 264-418 (497)
38 TIGR02316 propion_prpE propion 98.0 0.0016 3.5E-08 70.6 24.0 131 131-283 353-517 (628)
39 PRK05852 acyl-CoA synthetase; 98.0 0.00039 8.5E-09 73.4 18.7 149 108-282 275-452 (534)
40 TIGR01733 AA-adenyl-dom amino 98.0 7.8E-05 1.7E-09 75.1 12.2 145 108-282 219-399 (408)
41 PLN02330 4-coumarate--CoA liga 98.0 0.00029 6.3E-09 74.7 17.1 120 146-283 317-462 (546)
42 PRK12406 long-chain-fatty-acid 97.9 0.00038 8.3E-09 72.9 17.6 127 132-282 271-423 (509)
43 PRK12583 acyl-CoA synthetase; 97.9 0.00065 1.4E-08 71.8 19.3 131 131-282 316-472 (558)
44 PRK05850 acyl-CoA synthetase; 97.9 0.00044 9.5E-09 73.8 17.9 60 219-283 391-481 (578)
45 PRK07768 long-chain-fatty-acid 97.9 0.00083 1.8E-08 71.0 19.7 128 220-369 381-527 (545)
46 PRK08314 long-chain-fatty-acid 97.9 0.00056 1.2E-08 72.2 18.1 131 131-283 304-461 (546)
47 TIGR03208 cyc_hxne_CoA_lg cycl 97.9 0.00033 7.1E-09 74.0 16.1 129 131-282 309-461 (538)
48 PRK08316 acyl-CoA synthetase; 97.9 0.00027 5.9E-09 73.8 15.3 130 132-283 286-440 (523)
49 TIGR01217 ac_ac_CoA_syn acetoa 97.9 0.00051 1.1E-08 75.0 17.9 156 222-402 461-646 (652)
50 TIGR02275 DHB_AMP_lig 2,3-dihy 97.9 0.00058 1.3E-08 72.0 17.8 146 108-283 281-453 (527)
51 PRK13382 acyl-CoA synthetase; 97.9 0.00061 1.3E-08 72.2 18.1 130 131-283 311-461 (537)
52 PRK07059 Long-chain-fatty-acid 97.9 0.00043 9.3E-09 73.5 16.8 124 139-283 331-480 (557)
53 PRK06839 acyl-CoA synthetase; 97.9 0.0012 2.6E-08 68.5 19.7 129 131-283 263-416 (496)
54 PRK13383 acyl-CoA synthetase; 97.8 0.0014 3E-08 69.0 19.7 130 131-282 291-440 (516)
55 PRK07769 long-chain-fatty-acid 97.8 0.00081 1.7E-08 72.8 18.3 60 219-283 412-508 (631)
56 PRK13391 acyl-CoA synthetase; 97.8 0.00095 2.1E-08 70.0 18.2 128 132-283 275-427 (511)
57 PRK12492 long-chain-fatty-acid 97.8 0.0013 2.8E-08 70.1 19.1 128 132-282 333-485 (562)
58 PRK13390 acyl-CoA synthetase; 97.8 0.0012 2.6E-08 69.0 18.4 126 132-282 270-423 (501)
59 PRK08315 AMP-binding domain pr 97.8 0.001 2.2E-08 70.4 17.8 133 131-283 314-472 (559)
60 TIGR02262 benz_CoA_lig benzoat 97.8 0.0015 3.3E-08 68.3 18.8 129 133-283 279-429 (508)
61 PRK07638 acyl-CoA synthetase; 97.8 0.00024 5.2E-09 74.0 12.5 125 139-283 258-406 (487)
62 PLN02246 4-coumarate--CoA liga 97.8 0.0013 2.8E-08 69.5 18.1 130 132-282 298-456 (537)
63 PRK10252 entF enterobactin syn 97.8 0.00077 1.7E-08 78.8 17.8 130 132-283 717-882 (1296)
64 PRK08751 putative long-chain f 97.7 0.0009 1.9E-08 71.0 16.5 131 131-283 328-482 (560)
65 PRK08633 2-acyl-glycerophospho 97.7 0.00036 7.7E-09 80.3 14.4 130 131-283 897-1064(1146)
66 PRK13388 acyl-CoA synthetase; 97.7 0.0012 2.6E-08 70.1 17.4 123 146-282 277-424 (540)
67 PRK05851 long-chain-fatty-acid 97.7 0.0015 3.4E-08 68.9 17.9 59 220-283 367-440 (525)
68 TIGR03098 ligase_PEP_1 acyl-Co 97.7 0.0021 4.5E-08 67.1 18.5 130 132-282 274-438 (515)
69 PLN03051 acyl-activating enzym 97.7 0.0023 4.9E-08 67.3 18.9 41 238-282 358-401 (499)
70 PRK07868 acyl-CoA synthetase; 97.7 0.00092 2E-08 76.7 16.7 139 132-283 720-881 (994)
71 PRK07798 acyl-CoA synthetase; 97.7 0.0016 3.4E-08 68.1 17.1 130 132-283 296-453 (533)
72 PRK06710 long-chain-fatty-acid 97.7 0.00019 4.1E-09 76.3 10.2 130 132-283 323-476 (563)
73 PLN02860 o-succinylbenzoate-Co 97.7 0.00033 7.1E-09 74.7 12.0 141 131-283 287-459 (563)
74 PRK07470 acyl-CoA synthetase; 97.7 0.002 4.4E-08 67.7 17.7 131 130-282 278-438 (528)
75 PRK12476 putative fatty-acid-- 97.7 0.0016 3.5E-08 70.3 17.3 62 219-285 423-522 (612)
76 PRK12467 peptide synthase; Pro 97.7 0.00045 9.7E-09 89.2 14.9 132 131-283 3350-3516(3956)
77 PRK08276 long-chain-fatty-acid 97.6 0.0023 5E-08 66.7 17.4 128 131-283 261-414 (502)
78 PLN02387 long-chain-fatty-acid 97.6 0.0013 2.9E-08 72.4 15.9 131 132-282 420-580 (696)
79 PRK07787 acyl-CoA synthetase; 97.6 0.0029 6.2E-08 65.7 17.5 128 132-282 241-395 (471)
80 PRK07445 O-succinylbenzoic aci 97.6 0.0014 3.1E-08 68.3 14.8 58 222-283 298-369 (452)
81 PRK09192 acyl-CoA synthetase; 97.6 0.0029 6.3E-08 67.7 17.4 59 220-283 406-483 (579)
82 PRK07008 long-chain-fatty-acid 97.6 0.0039 8.3E-08 66.1 18.0 132 131-282 292-453 (539)
83 PF00501 AMP-binding: AMP-bind 97.6 0.00038 8.3E-09 70.5 9.9 115 130-265 275-412 (417)
84 PLN02614 long-chain acyl-CoA s 97.6 0.00031 6.6E-09 77.0 9.8 132 132-282 386-541 (666)
85 TIGR03443 alpha_am_amid L-amin 97.5 0.00036 7.8E-09 82.3 10.6 138 131-283 528-723 (1389)
86 PRK06188 acyl-CoA synthetase; 97.5 0.0045 9.8E-08 65.0 17.8 130 131-282 280-437 (524)
87 PLN02736 long-chain acyl-CoA s 97.5 0.00051 1.1E-08 74.8 10.9 131 133-282 377-532 (651)
88 PRK06178 acyl-CoA synthetase; 97.5 0.0034 7.4E-08 66.8 16.9 119 146-282 341-486 (567)
89 PRK05691 peptide synthase; Val 97.5 0.0017 3.8E-08 84.6 17.1 131 132-283 3983-4147(4334)
90 PRK08308 acyl-CoA synthetase; 97.5 0.0048 1E-07 63.0 17.1 56 222-283 278-336 (414)
91 COG0318 CaiC Acyl-CoA syntheta 97.5 0.0011 2.4E-08 70.6 12.5 149 107-283 271-446 (534)
92 PRK10946 entE enterobactin syn 97.5 0.0014 2.9E-08 69.5 12.9 128 131-282 299-453 (536)
93 PRK03640 O-succinylbenzoic aci 97.5 0.0046 1E-07 64.0 16.6 60 219-282 326-404 (483)
94 PRK05620 long-chain-fatty-acid 97.5 0.0077 1.7E-07 64.4 18.7 41 239-283 432-475 (576)
95 KOG1175 Acyl-CoA synthetase [L 97.4 0.024 5.2E-07 61.5 21.6 248 108-403 339-623 (626)
96 PRK08008 caiC putative crotono 97.4 0.0066 1.4E-07 63.6 17.1 116 146-282 301-442 (517)
97 PRK12316 peptide synthase; Pro 97.4 0.0027 5.8E-08 83.9 17.0 132 131-283 769-931 (5163)
98 PRK05857 acyl-CoA synthetase; 97.4 0.014 3E-07 62.0 19.2 151 108-282 268-446 (540)
99 PRK07824 O-succinylbenzoic aci 97.4 0.0056 1.2E-07 61.2 15.4 41 238-283 235-278 (358)
100 PLN03102 acyl-activating enzym 97.4 0.0012 2.7E-08 70.8 11.2 57 223-283 390-465 (579)
101 PRK12316 peptide synthase; Pro 97.4 0.0034 7.4E-08 83.0 17.2 147 108-283 2244-2426(5163)
102 TIGR01923 menE O-succinylbenzo 97.4 0.0061 1.3E-07 62.1 15.8 55 224-282 291-364 (436)
103 PLN02861 long-chain-fatty-acid 97.3 0.0012 2.6E-08 72.2 10.7 127 139-282 387-538 (660)
104 PRK08279 long-chain-acyl-CoA s 97.3 0.0014 3E-08 70.5 10.7 139 131-282 313-483 (600)
105 PRK12467 peptide synthase; Pro 97.3 0.0013 2.8E-08 85.1 12.0 130 132-282 771-934 (3956)
106 KOG1179 Very long-chain acyl-C 97.3 0.0062 1.3E-07 64.6 14.7 229 138-394 361-626 (649)
107 PTZ00342 acyl-CoA synthetase; 97.3 0.0024 5.2E-08 71.2 12.5 130 132-282 461-615 (746)
108 PRK06018 putative acyl-CoA syn 97.3 0.01 2.2E-07 62.9 16.7 55 224-282 383-454 (542)
109 PRK06814 acylglycerophosphoeth 97.3 0.0074 1.6E-07 69.9 16.8 42 238-283 1011-1055(1140)
110 PRK05691 peptide synthase; Val 97.3 0.004 8.6E-08 81.4 15.9 132 131-283 1387-1550(4334)
111 PRK08043 bifunctional acyl-[ac 97.2 0.0091 2E-07 65.9 16.6 42 238-283 592-636 (718)
112 PLN03052 acetate--CoA ligase; 97.2 0.031 6.7E-07 62.2 19.8 42 238-283 590-634 (728)
113 PRK06087 short chain acyl-CoA 97.1 0.0029 6.4E-08 66.9 10.8 128 132-282 302-454 (547)
114 COG1022 FAA1 Long-chain acyl-C 97.1 0.0011 2.5E-08 71.8 7.6 127 140-304 358-507 (613)
115 KOG1176 Acyl-CoA synthetase [L 97.0 0.0052 1.1E-07 65.9 11.7 131 131-283 298-453 (537)
116 PLN02430 long-chain-fatty-acid 97.0 0.0047 1E-07 67.7 11.5 59 220-282 460-538 (660)
117 PTZ00216 acyl-CoA synthetase; 96.8 0.0049 1.1E-07 67.9 9.9 59 221-283 503-582 (700)
118 PF14535 AMP-binding_C_2: AMP- 96.8 0.0014 3E-08 54.1 4.2 84 268-370 1-84 (96)
119 PRK08180 feruloyl-CoA synthase 96.8 0.0093 2E-07 64.5 11.1 43 239-281 442-490 (614)
120 PRK08162 acyl-CoA synthetase; 96.8 0.06 1.3E-06 56.9 16.9 56 224-283 387-461 (545)
121 PRK12582 acyl-CoA synthetase; 96.7 0.0055 1.2E-07 66.4 9.0 57 221-277 419-496 (624)
122 COG0365 Acs Acyl-coenzyme A sy 96.6 0.11 2.5E-06 55.6 17.9 128 131-283 289-441 (528)
123 PLN02479 acetate-CoA ligase 96.3 0.025 5.5E-07 60.3 10.7 55 224-282 401-474 (567)
124 PRK09029 O-succinylbenzoic aci 95.9 0.041 8.8E-07 56.9 9.8 41 238-283 333-376 (458)
125 COG1021 EntE Peptide arylation 95.8 0.025 5.5E-07 57.9 7.2 116 146-282 319-458 (542)
126 TIGR02372 4_coum_CoA_lig 4-cou 95.7 0.044 9.5E-07 56.4 8.9 42 238-283 276-320 (386)
127 KOG1256 Long-chain acyl-CoA sy 94.0 0.15 3.3E-06 55.8 7.6 133 128-282 415-572 (691)
128 KOG1177 Long chain fatty acid 93.8 0.21 4.6E-06 52.4 7.7 60 219-282 426-505 (596)
129 KOG1180 Acyl-CoA synthetase [L 91.4 2.7 5.9E-05 45.1 12.2 151 141-306 408-575 (678)
130 COG1020 EntF Non-ribosomal pep 87.4 3.2 7E-05 44.9 9.8 118 146-281 499-639 (642)
131 PRK09188 serine/threonine prot 72.3 6.2 0.00013 40.5 5.2 40 238-283 210-252 (365)
132 PF11454 DUF3016: Protein of u 69.3 7.1 0.00015 34.7 4.2 55 220-276 47-114 (141)
133 PF07311 Dodecin: Dodecin; In 67.4 19 0.00041 27.8 5.6 49 269-318 13-61 (66)
134 PF04443 LuxE: Acyl-protein sy 57.7 51 0.0011 33.8 8.6 104 146-273 242-360 (365)
135 cd04931 ACT_PAH ACT domain of 45.7 1.5E+02 0.0033 24.0 7.9 58 273-342 25-82 (90)
136 PF01797 Y1_Tnp: Transposase I 42.9 1.9E+02 0.0041 23.8 8.7 90 266-374 18-117 (121)
137 PF12401 DUF3662: Protein of u 40.9 19 0.00042 30.7 2.0 84 267-367 20-106 (116)
138 COG2026 RelE Cytotoxic transla 40.3 51 0.0011 26.7 4.3 37 226-262 43-82 (90)
139 PRK10885 cca multifunctional t 38.9 62 0.0014 33.7 5.8 77 52-135 121-211 (409)
140 PF12690 BsuPI: Intracellular 35.7 25 0.00054 28.1 1.8 22 220-241 20-43 (82)
141 PRK13298 tRNA CCA-pyrophosphor 34.4 1.2E+02 0.0026 31.8 7.1 77 52-135 121-211 (417)
142 PF09926 DUF2158: Uncharacteri 34.0 34 0.00074 25.2 2.1 19 239-260 1-19 (53)
143 PRK11899 prephenate dehydratas 33.6 2.4E+02 0.0052 27.9 8.7 41 273-319 205-245 (279)
144 PF12627 PolyA_pol_RNAbd: Prob 31.3 86 0.0019 23.0 4.1 41 89-135 21-61 (64)
145 cd05830 Sortase_D_5 Sortase D 29.4 54 0.0012 28.5 3.0 31 216-248 62-92 (137)
146 PF00659 POLO_box: POLO box du 28.6 78 0.0017 23.9 3.5 35 164-203 7-41 (68)
147 cd05828 Sortase_D_4 Sortase D 27.6 68 0.0015 27.5 3.3 31 216-248 58-88 (127)
148 cd04473 S1_RecJ_like S1_RecJ_l 25.9 94 0.002 24.0 3.6 18 215-232 9-26 (77)
149 COG2457 Uncharacterized conser 25.5 1.1E+02 0.0025 28.6 4.5 33 218-252 8-48 (199)
150 COG4126 Hydantoin racemase [Am 25.2 85 0.0018 30.1 3.7 55 107-170 154-209 (230)
151 COG5475 Uncharacterized small 25.1 77 0.0017 23.7 2.6 23 239-264 5-27 (60)
152 cd06166 Sortase_D_5 Sortase D 24.4 71 0.0015 27.3 2.8 32 215-248 60-91 (126)
153 PF07897 DUF1675: Protein of u 24.4 71 0.0015 31.7 3.1 17 236-252 242-258 (284)
154 PRK13297 tRNA CCA-pyrophosphor 23.8 2.4E+02 0.0052 29.1 6.9 79 52-137 132-222 (364)
155 cd05829 Sortase_E Sortase E (S 23.7 83 0.0018 27.7 3.2 30 216-247 69-99 (144)
156 COG0077 PheA Prephenate dehydr 23.7 4.2E+02 0.0092 26.3 8.4 68 247-320 167-246 (279)
157 PF00394 Cu-oxidase: Multicopp 23.6 1.5E+02 0.0034 26.1 5.0 64 159-241 70-135 (159)
158 cd03692 mtIF2_IVc mtIF2_IVc: t 22.3 71 0.0015 25.3 2.3 28 217-247 57-84 (84)
159 cd04880 ACT_AAAH-PDT-like ACT 22.2 3.4E+02 0.0075 20.3 7.9 39 275-319 12-50 (75)
160 TIGR01076 sortase_fam LPXTG-si 21.6 88 0.0019 27.1 2.9 27 216-244 60-86 (136)
161 COG3764 SrtA Sortase (surface 20.2 83 0.0018 29.9 2.6 34 214-249 129-162 (210)
162 cd04486 YhcR_OBF_like YhcR_OBF 20.1 87 0.0019 24.7 2.3 14 238-251 44-57 (78)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=6.5e-103 Score=822.31 Aligned_cols=408 Identities=32% Similarity=0.634 Sum_probs=374.3
Q ss_pred CCccCCCCCCCCCC--ccccccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHH
Q 014974 2 AASAFPLQGSSNEN--LSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCD 79 (415)
Q Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~ 79 (415)
++|+...+++...+ ....+.||+|.++++++|..++|||||||||.++++|..++++|+++|++++++||++|++||+
T Consensus 173 ~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~ 252 (612)
T PLN02620 173 PVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCR 252 (612)
T ss_pred cccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHH
Confidence 35556556555322 2345689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCC
Q 014974 80 DLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEV 159 (415)
Q Consensus 80 dI~~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v 159 (415)
||++|+++++++++++|++|++.| +|||++|+.|+++|++.+|+|++++|||||++|+||+||+|++|+++|++|+|++
T Consensus 253 DI~~G~ls~~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~ggl 331 (612)
T PLN02620 253 DIRTGTIDSQITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGL 331 (612)
T ss_pred HHhcCCCCccCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccc------------cccCCceeecCCcccCceEE
Q 014974 160 PVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGKMYE 227 (415)
Q Consensus 160 ~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~------------~~~~~~~l~l~ele~G~~Ye 227 (415)
|+++.+|+||||+||||++|.|++++..|+|+|+++||||||+++.+. +.+++++|+++|||+|++||
T Consensus 332 pl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~Ye 411 (612)
T PLN02620 332 PLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYE 411 (612)
T ss_pred ccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEE
Confidence 999999999999999999999999999999999999999999875310 13356789999999999999
Q ss_pred EEeccccceeeeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecC
Q 014974 228 VVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNL 304 (415)
Q Consensus 228 lVvTt~~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~ 304 (415)
|||||++||||||+||||+|+||||++|+|+|++|+++ |+|||++|++++.||++|...|.. .+++|+||++++|.
T Consensus 412 lvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~~d~ 490 (612)
T PLN02620 412 LVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSYADT 490 (612)
T ss_pred EEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEecccc
Confidence 99999999999999999999999999999999999998 999999999999999999987755 68999999999998
Q ss_pred CCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCeEEEEcCCChHHHHHHHHHhcCCCCC
Q 014974 305 ESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPAS 383 (415)
Q Consensus 305 ~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~ 383 (415)
++.||||++|||+..... ...+++.+++||..||++||.+|+.+|..+ +|+|++|++|++|||+++|++++++|++.+
T Consensus 491 ~~~PghYvl~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~ 569 (612)
T PLN02620 491 STIPGHYVLFWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASIN 569 (612)
T ss_pred CCCCCceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccc
Confidence 889999999999841110 124677899999999999999999999987 599999999999999999999999999999
Q ss_pred CCCCCcccCCHHHHHHHhccceEEEeccC
Q 014974 384 QYKPPKIVRNREIVEFMEGCSLVTVRLDS 412 (415)
Q Consensus 384 Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~ 412 (415)
|||+|||+++.+++++|+++|++++--..
T Consensus 570 QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~ 598 (612)
T PLN02620 570 QYKTPRCVKFAPIIELLNSRVVSNYFSPK 598 (612)
T ss_pred cccCceEecCHHHHHHHHhhhheeecccc
Confidence 99999999999999999999999876443
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=1.1e-101 Score=814.50 Aligned_cols=410 Identities=33% Similarity=0.660 Sum_probs=372.7
Q ss_pred CCccCCCCCCCCCCccc--cccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHH
Q 014974 2 AASAFPLQGSSNENLSQ--LIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCD 79 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~ 79 (415)
++++..+.++...+... .+.||+|.++++++|..++|||||||||.+++++..++++|++++++++++||++|++||+
T Consensus 161 ~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we~L~~ 240 (606)
T PLN02247 161 PVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELCS 240 (606)
T ss_pred cccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 34555555443233332 3689999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCC
Q 014974 80 DLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEV 159 (415)
Q Consensus 80 dI~~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v 159 (415)
||++|++++++++|++|+++.+.+..|||++|++|+++|.+.+|.|++++|||||++|+||+||+|++|+++|++|+|++
T Consensus 241 DI~~G~ls~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~~~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~ggl 320 (606)
T PLN02247 241 NIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGL 320 (606)
T ss_pred HHhcCCcccccCCHHHHHHHhhcccCCCHHHHHHHHHHhcccCccccHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999977999999999999998899999999999999999999999999999999999999
Q ss_pred CccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCccccc-----------------ccCCceeecCCccc
Q 014974 160 PVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNE-----------------AVGEETVDFSGVEI 222 (415)
Q Consensus 160 ~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~-----------------~~~~~~l~l~ele~ 222 (415)
|+++.+|+||||+||||++|.|++++..|+++|+++||||||+++.+.+ .+++++|+++|||+
T Consensus 321 pl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~ 400 (606)
T PLN02247 321 PLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKV 400 (606)
T ss_pred ceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCcccccccccccccccccccccccCceecHHHccC
Confidence 9999999999999999999999999999999999999999998754100 22456999999999
Q ss_pred CceEEEEeccccceeeeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEE
Q 014974 223 GKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFA 299 (415)
Q Consensus 223 G~~YelVvTt~~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~ 299 (415)
|++|||||||++||||||+||||+|+||||++|+|+|+||+++ |+|||++|+++++||.+|...|+. .+..+.+|+
T Consensus 401 G~~YelVvTt~~GLYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~d~t 479 (606)
T PLN02247 401 GHYYELVVTTFTGLYRYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEP-LGFLLTEYT 479 (606)
T ss_pred CCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHHHhhcc-cCeeeeeee
Confidence 9999999999999999999999999999999999999999998 999999999999999999986655 689999999
Q ss_pred EeecCCCCCceEEEEEEeecCccc--cCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCeEEEEcCCChHHHHHHHHH
Q 014974 300 GYTNLESSPKKLMIFVEIREGCTK--LRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAI 376 (415)
Q Consensus 300 ~~~d~~~~~~~Y~l~vE~~~~~~~--~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~Gtf~~~~~~~~ 376 (415)
+++|.++.||||++|||+...... ...+...+++||..||++||.+|+.+|+.+ +|+|++|++|++|||+++|++++
T Consensus 480 s~~d~~~~PghYvlf~El~~~~~~~~~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~~igPLeirvv~~GtF~~l~~~~~ 559 (606)
T PLN02247 480 SYADTSSIPGHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDKSIGPLEIRVVKHGTFDALMDFCV 559 (606)
T ss_pred cccccCCCCCceEEEEEeecCCCCccccchHHHHHHHHHHHHHHhhHHHHHHhhccCcCCCcEEEEeCCChHHHHHHHHH
Confidence 999988889999999999531110 123467899999999999999999999995 99999999999999999999999
Q ss_pred hcCCCCCCCCCCcccCCHHHHHHHhccceEEEeccC
Q 014974 377 EKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDS 412 (415)
Q Consensus 377 ~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~ 412 (415)
++|++.+|||+|||+++.+++++|+++|++++--..
T Consensus 560 ~~G~s~~Q~K~Pr~v~~~~~~~~l~~~v~~~~~s~~ 595 (606)
T PLN02247 560 SQGSSVNQYKTPRCIKSEEALKILDSRVIGRFFSKR 595 (606)
T ss_pred HcCCCcccccCceEecCHHHHHHHHhhhheeecccc
Confidence 999999999999999999999999999999876443
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=4.6e-95 Score=769.39 Aligned_cols=398 Identities=31% Similarity=0.627 Sum_probs=368.3
Q ss_pred CCccccccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChH
Q 014974 14 ENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEV 93 (415)
Q Consensus 14 ~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~dI~~Gt~~~~i~~~ 93 (415)
.+....+.|++|.+++.+.|..++|||||||||.+++++..|+++||+.+++++++|+++|++||+||++|+++.+++++
T Consensus 184 ~~~~~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~weel~~dI~~g~~~~~~~~~ 263 (597)
T PLN02249 184 RTSDYDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWKELAQDISTGTLSSKIFDP 263 (597)
T ss_pred ccccccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHHHHHHHHHhCCCcccccch
Confidence 34455778999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCCCccccccccCceEE
Q 014974 94 AMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV 173 (415)
Q Consensus 94 ~~r~~l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~i 173 (415)
.+|..|..++|.|+|++|++|+++|++.+|+|++++|||||++|+||++|+|++|+++|++|+|++++++++|+||||+|
T Consensus 264 ~~~~~v~~i~g~P~~~la~~i~~~~~~~~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~~~~~~~Y~ASEg~~ 343 (597)
T PLN02249 264 AIKNRMSKILNKPDQELAEFLIGVCSQENWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMASTIYASSESYF 343 (597)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhccccccccHHHhCCCCCeEEEEecCChHHHHHHHHHHcCCCccccccccccceEE
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCceeeecCCceEEEeeeCCcccc-cccCCceeecCCcccCceEEEEeccccceeeeeeCCEEEEeeecC
Q 014974 174 GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN-EAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYN 252 (415)
Q Consensus 174 gi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~-~~~~~~~l~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~gf~~ 252 (415)
|||+++.|++++..|+|+|+++||||||.++... ..+++++++++|||+|++|||||||++|||||++|||||||||||
T Consensus 344 gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~GLyRY~iGDvVrvtgf~~ 423 (597)
T PLN02249 344 GINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGALDETSLVELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHN 423 (597)
T ss_pred EeecCCCCCCCCcceEecCCcEEEEeeecccCCcccCCCCcEecHHHcCCCCeEEEEEEcccceeEeecCCEEEEeeccC
Confidence 9999999998889999999999999999875310 125678999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCcccc-CCCH
Q 014974 253 SSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKL-RDSV 328 (415)
Q Consensus 253 ~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~-~~~~ 328 (415)
++|+|+|+||+++ ++|||++|+++++||.+|..++++ .|+.|.||++.++..+.|+||++|||++...... ..+.
T Consensus 424 ~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~a~~~~~~-~~~~v~eft~~~~~~~~p~Hyvl~wei~~~~~~~~~~~~ 502 (597)
T PLN02249 424 SAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAE-QGTRVIEYTSYAETKTIPGHYVIYWELLGRDQSNALPSD 502 (597)
T ss_pred CCcEEEEEccCCcceecccccCCHHHHHHHHHHHHHHhhh-cCceEEEeEEecCCCCCCCceEEEEEEeccccccCCCCH
Confidence 9999999999998 999999999999999998776656 8999999999888877799999999994210000 1467
Q ss_pred HHHHHHHHHHHHHhChhHHHhhhcC-CCCCeEEEEcCCChHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhccceEE
Q 014974 329 AILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVT 407 (415)
Q Consensus 329 ~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~ 407 (415)
+.+++||..++++||.+|+.+|..+ +|+|++|++|++|+|.+|+++++++|++.||||+|||+++++++++|+++|++.
T Consensus 503 ~~~~~~~~~~e~~ln~~Y~~~R~~~~~L~pl~v~vv~~GtF~~~~~~~~~~G~~~gQ~K~Prl~~~~~~~~~l~~~~~~~ 582 (597)
T PLN02249 503 EVMAKCCLEMEESLNSVYRQSRVSDKSIGPLEIRVVQNGTFEELMDYAISRGSSINQYKVPRCVSLTPIMELLDSRVVSA 582 (597)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHhcCCccCCeEEEEeCCchHHHHHHHHHhCCCcCCCcCCceEeCCHHHHHHHHhhhhee
Confidence 7889999999999999999999886 999999999999999999999999999999999999999999999999999998
Q ss_pred EeccC
Q 014974 408 VRLDS 412 (415)
Q Consensus 408 ~~~~~ 412 (415)
+.-..
T Consensus 583 ~~~~~ 587 (597)
T PLN02249 583 HFSPS 587 (597)
T ss_pred ecccc
Confidence 87544
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=2.8e-86 Score=699.11 Aligned_cols=347 Identities=33% Similarity=0.631 Sum_probs=285.4
Q ss_pred cccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q 014974 19 LIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDS 98 (415)
Q Consensus 19 ~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~dI~~Gt~~~~i~~~~~r~~ 98 (415)
..+|++|.+++.+.|..+++||||+|+|.+.+||++|+++||++|+.++++|+++|++||+||++|+++
T Consensus 171 ~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~dI~~G~~~----------- 239 (528)
T PF03321_consen 171 RSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEELVEDIRDGTLS----------- 239 (528)
T ss_dssp HG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-------------
T ss_pred ccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHHhcCCccc-----------
Confidence 358999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCCCccccccccCceEEEeeCC
Q 014974 99 VIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLD 178 (415)
Q Consensus 99 l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~ 178 (415)
+.+|||+||++|+++|++ + .|++++|||||++|+||++|+|++|+++|++|+|++++++++|+||||+||||++
T Consensus 240 ----~~~p~p~rA~~L~~~~~~-~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~ 313 (528)
T PF03321_consen 240 ----LLRPNPERAAELRAEFEK-G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD 313 (528)
T ss_dssp ----C-S--HHHHHHHHHHHCC-S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES-
T ss_pred ----cCCCCHHHHHHHHHhhcc-c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC
Confidence 238999999999999997 4 7899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCceeeecCCceEEEeeeCCcccc-cccCCceeecCCcccCceEEEEeccccceeeeeeCCEEEEeeecCCCcEE
Q 014974 179 IAQPPQTTRFVMLPTAAYFEFLPFDMEKN-EAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV 257 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~ffEFIp~~~~~~-~~~~~~~l~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~gf~~~~P~i 257 (415)
++. ..|+++|+++||||||+++.+. ..+++++++++|||+|++|||||||.+|||||||||||||+||+|++|+|
T Consensus 314 ~~~----~~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~~GLyRY~iGDvVrv~gf~~~~P~i 389 (528)
T PF03321_consen 314 PED----PGYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYELVITTNSGLYRYRIGDVVRVTGFYNQTPRI 389 (528)
T ss_dssp CCC------EEE-TTSSEEEEEE-STT-------SSSEEGGG--TT-EEEEEEESTTS-SSEEECEEEEEEEEETTEEEE
T ss_pred CCC----CceEeecCCeEEEEEeccCCcccccCCCceecHHHhcCCCeEEEEEecccceeeeecCCEEEEeeccCCCcEE
Confidence 443 5789999999999999986410 14679999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHH
Q 014974 258 EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRR 333 (415)
Q Consensus 258 ~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d-~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~ 333 (415)
+|+||.++ ++|||++|++|++||.+++. + .|+.+.+|++.++ .++.+|||++|||+.. .++.++.
T Consensus 390 ~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~---~-~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~-------~~~~~~~ 458 (528)
T PF03321_consen 390 EFVGRRGQVLSLFGEKLSEEQVQEAVARALQ---E-TGLELRDFTVAPDPSSGNPPHYVLFWELEG-------EPDDLEE 458 (528)
T ss_dssp EEEEETTEEE-SSS--EEHHHHHHHHHHHHH---C-TT-EEEEEEEEEE--SSSSBEEEEEEEECS--------HHHHHH
T ss_pred EEeccCCceeecceeecCHHHHHHHHHHHHH---h-cCCceeeEEEEeecccCCCCceEEEEEeCC-------CchHHHH
Confidence 99999997 99999999999999999976 6 9999999999998 5778999999999964 2567889
Q ss_pred HHHHHHHHh---ChhHHHhhhc-CCCCCeEEEEcCCChHHHHHHHHHhc-CCCCCCCCCCcccCCHHHH
Q 014974 334 CCSSLEDAF---GSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEK-GAPASQYKPPKIVRNREIV 397 (415)
Q Consensus 334 ~~~~ld~~L---n~~Y~~~R~~-g~l~p~~v~~v~~Gtf~~~~~~~~~~-G~~~~Q~K~Pr~~~~~~~~ 397 (415)
|++.||++| |++|+.+|+. |+|+|++|++|++|+|++|+++++++ |++.+|||+|||++++++.
T Consensus 459 ~~~~lD~~L~~~n~~Y~~~R~~~g~L~p~~v~~v~~g~f~~~~~~~~~~~G~~~~Q~K~pr~~~~~~~~ 527 (528)
T PF03321_consen 459 LAKALDESLQELNPHYRRARESDGQLGPPRVHIVRPGTFDALMERAVARLGGSAGQYKVPRLIRDREFV 527 (528)
T ss_dssp HHHHHHHCS----HHHHHHHHTSTSC---EEEEE-TTHHHHHHHHHHCT-T--SSS----SS--TCHHH
T ss_pred HHHHHHHHhhhCCchHHHHHhhcCCcCCcEEEEeCcchHHHHHHHHhhcCCCCccceeCccccCccccC
Confidence 999999999 9999999999 99999999999999999999999999 9999999999999999874
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.64 E-value=6.6e-15 Score=150.68 Aligned_cols=233 Identities=17% Similarity=0.162 Sum_probs=166.0
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecC--ChHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCC
Q 014974 107 QPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTG--SMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ 184 (415)
Q Consensus 107 ~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G--~~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~ 184 (415)
.|+++..|.+...+.|. ...++ ++| ..+.+| -++..++.+++.|| ++.+ ..||+||+++.- ...|+..
T Consensus 189 tps~~l~lae~~~~~G~--~~~~~--~lk--~~i~gaE~~see~R~~ie~~~g-~~~~-diYGltE~~g~g--~~eC~~~ 258 (438)
T COG1541 189 TPSYLLYLAEEAEEEGI--DPDKL--SLK--KGIFGAEPWSEEMRKVIENRFG-CKAF-DIYGLTEGFGPG--AGECTER 258 (438)
T ss_pred ChHHHHHHHHHHHHcCC--Chhhc--cee--EEEEecccCCHHHHHHHHHHhC-Ccee-eccccccccCCc--ccccccc
Confidence 39999999999988652 34566 666 444444 25888999999999 7777 999999996531 2456565
Q ss_pred CceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc--cc--eeeeeeCCEEEEeeecC----CCcE
Q 014974 185 TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY--RG--FYRYRLGDIVKVVDFYN----SSPQ 256 (415)
Q Consensus 185 ~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~--~G--LyRYriGDvV~V~gf~~----~~P~ 256 (415)
.+.++..+ .-|+|.+++++ ++. |..|+.+|||+||+ .| |.|||+||++.+....| ..|+
T Consensus 259 ~glhi~eD-~~~~Ei~dP~t-------~e~-----l~dge~GelV~T~L~~~~~PlIRYrtgDit~i~~~~C~cGr~~~r 325 (438)
T COG1541 259 NGLHIWED-HFIFEIVDPET-------GEQ-----LPDGERGELVITTLTKEGMPLIRYRTGDITVILSDPCGCGRTHRR 325 (438)
T ss_pred cCCCcchh-hceeeeecCCc-------Ccc-----CCCCCeeEEEEEeccccCcceEEEEcCCeeEecccCCCCCCcccc
Confidence 56665554 44899999886 344 45999999999998 33 99999999999999554 3456
Q ss_pred E-EEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHH
Q 014974 257 V-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILR 332 (415)
Q Consensus 257 i-~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~ 332 (415)
| ++.||.++ +.|.++++.++++++.+... +.. +|.+.....+...+..+-+|..++ ........
T Consensus 326 i~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~-------~~~-~yqi~~~~~~~~d~L~V~vE~~~~----~~~~~~~~ 393 (438)
T COG1541 326 IERIEGRSDDMLIVRGVNVFPSQIERVLLQIPE-------VTP-HYQIILTRNGGLDELTVRVELENE----AEELEDER 393 (438)
T ss_pred ccccCcccccEEEECCEEeCHHHHHHHHhcccC-------CCc-eEEEEEecCCCCceEEEEEEecCc----ccchHHHH
Confidence 6 89999999 99999999999999986532 111 898877664445677788888642 01122223
Q ss_pred HHHHHHHHHhChhHHHhhhcCCCCCeEEEEcCCChHHHHHHHHHhcCCCCCCCCCCcccCCH
Q 014974 333 RCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNR 394 (415)
Q Consensus 333 ~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~ 394 (415)
+++..+...+ +.-...+++|.+|.+|+.++.. + |.+|++..+
T Consensus 394 ~~~~~l~~~~--------~~~~~~~~~v~~v~~g~l~r~~----------~--K~krvvd~r 435 (438)
T COG1541 394 RLAKKLIKNI--------KSELGVRVEVELVEPGELPRTE----------G--KAKRVVDKR 435 (438)
T ss_pred HHHHHHHHHH--------HhhcCCceEEEEEeccceeccc----------C--ceeEEEEec
Confidence 3334444444 3445688999999999987432 2 777776543
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.57 E-value=8e-14 Score=145.05 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCC
Q 014974 107 QPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ 184 (415)
Q Consensus 107 ~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~ 184 (415)
.|..+..|.+.+.+.|. -.. .++++. .+.+|. ....+..+++.|| ++++ ..||+||+.++. .|...
T Consensus 183 ~ps~ll~La~~~~~~g~---~~~-~~~lr~--ii~gGE~l~~~~r~~ie~~~g-~~v~-~~YG~TE~~~~~----~c~~~ 250 (445)
T TIGR03335 183 SVFKLLRLARRMKAEGI---DPA-ESSIRR--LVVGGESFADESRNYVEELWG-CEVY-NTYGSTEGTMCG----ECQAV 250 (445)
T ss_pred CHHHHHHHHHHHHHcCC---Ccc-cCcceE--EEEcCCCCCHHHHHHHHHHhC-CcEE-ecCChhhhhheE----EecCC
Confidence 46666676666554332 111 357773 344442 2455678888887 8998 899999975443 23232
Q ss_pred CceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEecccc------c--eeeeeeCCEEEEe-eecC---
Q 014974 185 TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR------G--FYRYRLGDIVKVV-DFYN--- 252 (415)
Q Consensus 185 ~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~------G--LyRYriGDvV~V~-gf~~--- 252 (415)
.+++ +..+..++|.+++++ .++ |..|+.+|||+|++. | |.||||||++++. .-.|
T Consensus 251 ~g~h-~~~d~~~vEIvDp~~-------~~~-----vp~Ge~GELvvT~L~~~~~r~~~PliRYrtgD~~~~~~~~~C~CG 317 (445)
T TIGR03335 251 AGLH-VPEDLVHLDVYDPRH-------QRF-----LPDGECGRIVLTTLLKPGERCGSLLINYDTEDTTVVISRDRCPCG 317 (445)
T ss_pred CCcc-ccCCceEEEEEcCCC-------CCC-----CcCCCceEEEEEecCCCCccCCceEEEeecCceEEEecCCCCCCC
Confidence 3444 555667899998764 223 458999999999983 3 9999999999974 3343
Q ss_pred -CCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCC-CCceEEEEEEeecCccccCCC
Q 014974 253 -SSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLES-SPKKLMIFVEIREGCTKLRDS 327 (415)
Q Consensus 253 -~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~-~~~~Y~l~vE~~~~~~~~~~~ 327 (415)
..|+|..+||.++ |+|.++++.+|+++|.+..... ++.+ +|.+..+... ....-.|-+|.... .
T Consensus 318 r~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~v~~e~~~~------~ 386 (445)
T TIGR03335 318 RTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMD-SLTG----EYEAFLYGEEEGEITLRVSLECEDK------D 386 (445)
T ss_pred CCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCC-CCCc----cEEEEEecCCCCCceEEEEEEecCc------c
Confidence 3478887899998 9999999999999998741100 2123 7887765432 12344566776432 1
Q ss_pred HHHHHHHHHHHHHHhChhHHHhh---hcCCCCCeEEEEcCCChHHHH
Q 014974 328 VAILRRCCSSLEDAFGSIYKVQR---DRGEISPLSVSIVKPGTFDRL 371 (415)
Q Consensus 328 ~~~l~~~~~~ld~~Ln~~Y~~~R---~~g~l~p~~v~~v~~Gtf~~~ 371 (415)
....+++.+.+.+.+...++..+ ..+ .-.++|.++++|++++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 432 (445)
T TIGR03335 387 NCSIHDIQENFTGTFLKYKPELIGSYDEG-IFQILVNFTGPGELELH 432 (445)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhhhhhcc-eEEEEEEEeCCCCcccc
Confidence 12233344444444211121111 122 34578999999999743
No 7
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.26 E-value=3.4e-10 Score=116.53 Aligned_cols=222 Identities=13% Similarity=0.116 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceE---EEeeCCCCCC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECY---VGINLDIAQP 182 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~---igi~~~~~~~ 182 (415)
|..+..|.+...+.|.. ... ++++. ++.+|. .+..+..+++.|| ++++ ..||+||+. ++.. |.
T Consensus 175 Ps~l~~L~~~~~~~~~~--~~~--~~lr~--i~~~ge~l~~~~~~~i~~~~g-~~v~-~~YG~tE~~~~~~~~~----~~ 242 (422)
T TIGR02155 175 PSYMLNLLEELKRMGID--PAQ--TSLQV--GIFGAEPWTNAMRKEIEARLG-MKAT-DIYGLSEVIGPGVAME----CV 242 (422)
T ss_pred HHHHHHHHHHHHHcCCC--ccc--CceEE--EEEeCCcCCHHHHHHHHHHhC-CceE-ecccchhhcCCceeec----cc
Confidence 77777776655433321 111 36663 344443 3566788888887 8888 889999962 3332 21
Q ss_pred CCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccccc----eeeeeeCCEEEEeeecC-CCcEE
Q 014974 183 PQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFYN-SSPQV 257 (415)
Q Consensus 183 ~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~G----LyRYriGDvV~V~gf~~-~~P~i 257 (415)
.....+.+.....+.|.+++++ +++ +..|+.+|||+|+... +-||++||++++..-.+ +.|++
T Consensus 243 ~~~~g~~~~~~~~~~eivd~~~-------g~~-----v~~Ge~Gelvvt~~~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~ 310 (422)
T TIGR02155 243 ETQDGLHIWEDHFYPEIIDPHT-------GEV-----LPDGEEGELVFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRM 310 (422)
T ss_pred ccCCCceEecCeeEEEEECCCC-------CCC-----CCCCCeeEEEEecCCccccceeeEEcCcEEEEECCCCCccccc
Confidence 1112234445567889987643 233 4589999999998632 67999999999865211 34555
Q ss_pred -EEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHH
Q 014974 258 -EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRR 333 (415)
Q Consensus 258 -~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~ 333 (415)
.|+||.++ +.|+++++.+|+.++.+. + ++. ..|.+..+..+.+-..++++|...+.. .....+..+.
T Consensus 311 ~~i~GR~~d~i~~~G~~v~p~eie~~l~~~-~------~v~-~~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 381 (422)
T TIGR02155 311 DRITGRSDDMLIIRGVNVFPTQLEEVILKM-D------ELS-PHYQLELTRNGHMDELTLKVELKPESY-TLRLHEQASL 381 (422)
T ss_pred ccccCccCCeEEECCEEECHHHHHHHHHhC-c------CcC-CCEEEEEEcCCCccEEEEEEEEecCcc-cccchHHHHH
Confidence 89999998 889999999999998753 2 221 156665554332336677888753210 0011223334
Q ss_pred HHHHHHHHhChhHHHhhhcCCCCCeEEEEcCCChHHH
Q 014974 334 CCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 370 (415)
Q Consensus 334 ~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~Gtf~~ 370 (415)
++++|.+.+ |+ ..-..++|.++.+|++.+
T Consensus 382 ~~~~i~~~~-------~~-~~~~~~~v~~~~~~~lp~ 410 (422)
T TIGR02155 382 LAGEIQHTI-------KQ-EVGVSMDVHLVEPGSLPR 410 (422)
T ss_pred HHHHHHHHH-------Hh-ccCcEEEEEEECCCCccC
Confidence 455666666 32 222236799999999863
No 8
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.21 E-value=6.7e-10 Score=115.31 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT 185 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~ 185 (415)
|+.+.+|.+...+.| + ++ +++ ..+.+|- .+..++.|++.|| ++++ ..||+|||++|. .|+.
T Consensus 195 pS~l~~LA~~~~~~~---l--~~--~~k--~ii~~~E~l~~~~r~~Ie~~fg-~~V~-~~YG~tEg~la~----eC~~-- 257 (430)
T TIGR02304 195 PSVLRALALEVMEGE---L--TI--KPK--KVISVAEVLEPQDRELIRNVFK-NTVH-QIYQATEGFLAS----TCRC-- 257 (430)
T ss_pred HHHHHHHHHHHHhcC---C--CC--Cce--EEEEccCCCCHHHHHHHHHHhC-CCee-EccCCchhheEE----ecCC--
Confidence 788888888766533 2 23 455 3444442 3566678899998 8888 799999988775 3333
Q ss_pred ceeeecCCceEEE--eeeCCcccccccCCceeecCCcccCceEEEEeccccc----eeeeeeCCEEEEeeecC----CCc
Q 014974 186 TRFVMLPTAAYFE--FLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFYN----SSP 255 (415)
Q Consensus 186 ~~~~l~~~~~ffE--FIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~G----LyRYriGDvV~V~gf~~----~~P 255 (415)
+.|.+.++..|+| .++++ + ..+.|||++.. |.||++||++++.+-.| ..|
T Consensus 258 g~lHl~ed~~~vE~~ivD~~--------~------------~~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~ 317 (430)
T TIGR02304 258 GTLHLNEDLVHIEKQYLDEH--------K------------RFVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSATM 317 (430)
T ss_pred CCEEEccccEEEEeeEECCC--------C------------ceEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCccc
Confidence 3467888889999 46532 1 13349999854 99999999998876654 246
Q ss_pred EE-EEEeeCCC-cc-----e--eecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEe
Q 014974 256 QV-EFVMRAPK-SS-----F--EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 317 (415)
Q Consensus 256 ~i-~F~gR~~~-l~-----g--Ekl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~ 317 (415)
+| ++.||.++ +. | ..+++..+..++....+ .+.+|.++... +.+..+.+..
T Consensus 318 ~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~--------~i~~yQi~Q~~---~~~l~v~~~~ 377 (430)
T TIGR02304 318 AIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLP--------LIVEYRVLQTG---SAQLELIADC 377 (430)
T ss_pred ccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCC--------CCceEEEEEcc---CCeEEEEEEe
Confidence 88 59999998 32 3 44588888777654322 24589887654 5677766653
No 9
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=98.51 E-value=3.9e-05 Score=83.12 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=122.9
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCC--CCccccccccCceEEEe--eCC--CCCCCCCceeeecCCceEEEeeeC
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGE--VPVLGGDYFASECYVGI--NLD--IAQPPQTTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~--v~~~~~~y~aSEg~igi--~~~--~~~~~~~~~~~l~~~~~ffEFIp~ 202 (415)
.+.|++| +.+|. + ......+++.+|. ++++ .+||+||+...+ +.. ..+.++. .....|+. -++.++.
T Consensus 366 ~~~lr~i--~~~Ge~l~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~-vG~p~~g~-~~~i~d~ 440 (637)
T PRK00174 366 LSSLRLL--GSVGEPINPEAWEWYYKVVGGERCPIV-DTWWQTETGGIMITPLPGATPLKPGS-ATRPLPGI-QPAVVDE 440 (637)
T ss_pred ccceeEE--EEeCCCCCHHHHHHHHHHhCCCCCceE-ecccccccCCceEecCCCCCCcCCCc-ccCCCCCc-eEEEECC
Confidence 3567743 33332 2 4445667777763 8888 999999963321 110 0111111 12233333 3445542
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc-----------------------cceeeeeeCCEEEEeeecCCCcEEEE
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----------------------RGFYRYRLGDIVKVVDFYNSSPQVEF 259 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~-----------------------~GLyRYriGDvV~V~gf~~~~P~i~F 259 (415)
+ ++. +..|+.+||+|+.. .| .|++||++++.. .-.+.|
T Consensus 441 ~--------g~~-----~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~----dG~l~~ 501 (637)
T PRK00174 441 E--------GNP-----LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKG--MYFTGDGARRDE----DGYYWI 501 (637)
T ss_pred C--------CCC-----CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCC--EEECCceEEEcC----CCcEEE
Confidence 2 333 45799999999852 23 299999999853 347899
Q ss_pred EeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecC-CCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 014974 260 VMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNL-ESSPKKLMIFVEIREGCTKLRDSVAILRRCC 335 (415)
Q Consensus 260 ~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~-~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~ 335 (415)
+||.++ +.|++++..+|+++|.+. + + +.+..++... ......-+.|+....+ ...+.+..+++.
T Consensus 502 ~GR~dd~ik~~G~~v~p~eIE~~l~~~-~------~--V~~~~Vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~ 569 (637)
T PRK00174 502 TGRVDDVLNVSGHRLGTAEIESALVAH-P------K--VAEAAVVGRPDDIKGQGIYAFVTLKGG---EEPSDELRKELR 569 (637)
T ss_pred EEecccEEEeCCEEECHHHHHHHHHhC-C------C--cceEEEEeeEcCCCCeEEEEEEEECCC---CCCCHHHHHHHH
Confidence 999998 889999999999999753 1 2 2344443311 1111223456665432 111222233344
Q ss_pred HHHHHHhChhHHHhhhcCCCCCeEEEEc------CCChHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhccc
Q 014974 336 SSLEDAFGSIYKVQRDRGEISPLSVSIV------KPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCS 404 (415)
Q Consensus 336 ~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v------~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~ 404 (415)
+.+.+.| .....|-.+..| ..|-..+-.=..+.+|.. +.+-+.-+.|++.++.+.+.+
T Consensus 570 ~~l~~~l---------~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 633 (637)
T PRK00174 570 NWVRKEI---------GPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE--ILGDTSTLADPSVVEKLIEAR 633 (637)
T ss_pred HHHHhhc---------CCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC--CCCCcccccCHHHHHHHHHHH
Confidence 4444444 112345556655 233333321112223332 456677788999888887643
No 10
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.36 E-value=2.8e-05 Score=85.31 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC--CCC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPP 183 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~--~~~ 183 (415)
|.....|.+.+.. .-+++++++ +.+|. + +..+.++++.+++++++ ..||.||+......... ..+
T Consensus 244 P~~l~~l~~~~~~--------~~~~slr~i--~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~ 312 (705)
T PRK06060 244 PNFFARVIDSCSP--------DSFRSLRCV--VSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRL 312 (705)
T ss_pred HHHHHHHHHhccc--------ccccceeEE--EEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCc
Confidence 6666666544321 123567732 33342 2 55567888888888998 99999997422211111 011
Q ss_pred CCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---cceee-----------eeeCCEEEEee
Q 014974 184 QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-----------YRLGDIVKVVD 249 (415)
Q Consensus 184 ~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR-----------YriGDvV~V~g 249 (415)
. ......++. .++.++.+ +++ +..|+.+||+|+.. .|.|. |++||++++..
T Consensus 313 ~-~iG~p~~~~-~v~i~d~~--------g~~-----~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~ 377 (705)
T PRK06060 313 G-TLGRVLPPY-EIRVVAPD--------GTT-----AGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDS 377 (705)
T ss_pred C-cccccCCCc-EEEEECCC--------CCC-----CCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECC
Confidence 1 112233443 34455432 222 45899999999863 23332 99999998753
Q ss_pred ecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 250 FYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 250 f~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 378 ----dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 410 (705)
T PRK06060 378 ----DGWVTYRCRADDTEVIGGVNVDPREVERLIIED 410 (705)
T ss_pred ----CceEEEecccCceEEECCEEECHHHHHHHHHhC
Confidence 236999999998 899999999999988753
No 11
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.34 E-value=0.00018 Score=77.68 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=120.8
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCC--CCccccccccCceEEE-eeCCCC---CCCCCceeeecCCceEEEeeeCC
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGE--VPVLGGDYFASECYVG-INLDIA---QPPQTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~--v~~~~~~y~aSEg~ig-i~~~~~---~~~~~~~~~l~~~~~ffEFIp~~ 203 (415)
+.|++| +.+|. + +.-...+++.+|. ++++ ..||.||+... +...+. ..++. .....|+. -.+.++.+
T Consensus 358 ~~lr~i--~~~G~~l~~~~~~~~~~~~~~~~~~i~-~~yG~TE~~~~~~~~~~~~~~~~~~~-~G~p~~g~-~~~i~d~~ 432 (625)
T TIGR02188 358 SSLRLL--GSVGEPINPEAWMWYYKVVGKERCPIV-DTWWQTETGGIMITPLPGATPTKPGS-ATLPFFGI-EPAVVDEE 432 (625)
T ss_pred cceeEE--EEecCCCCHHHHHHHHHHcCCCCCceE-ecccccccCCceeecCCCCCCcCCCc-ccCCcCCc-eEEEECCC
Confidence 466633 33343 2 4445667777763 8888 99999996322 110010 11111 11122332 34444421
Q ss_pred cccccccCCceeecCCcc-cCceEEEEeccc-----ccee----------------eeeeCCEEEEeeecCCCcEEEEEe
Q 014974 204 MEKNEAVGEETVDFSGVE-IGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 204 ~~~~~~~~~~~l~l~ele-~G~~YelVvTt~-----~GLy----------------RYriGDvV~V~gf~~~~P~i~F~g 261 (415)
++ .+. .|+.+||+|+.. .|.| -|++||++++.. .=.+.|+|
T Consensus 433 --------g~-----~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~G 495 (625)
T TIGR02188 433 --------GN-----PVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDK----DGYIWITG 495 (625)
T ss_pred --------CC-----CCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcC----CCcEEEEe
Confidence 22 245 799999999872 1222 189999998853 23688999
Q ss_pred eCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS 337 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d-~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ 337 (415)
|.++ +.|++++..+|+++|.+. + + +.+..++.- .......-+.|+.+..+ ...+.+..+++.+.
T Consensus 496 R~dd~i~~~G~ri~p~eIE~~l~~~-p------~--V~e~~vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~~~ 563 (625)
T TIGR02188 496 RVDDVINVSGHRLGTAEIESALVSH-P------A--VAEAAVVGIPDDIKGQAIYAFVTLKDG---YEPDDELRKELRKH 563 (625)
T ss_pred cccCEEEeCCEEECHHHHHHHHHhC-C------C--cceEEEEeeEcCCCCeEEEEEEEeCCC---CCCCHHHHHHHHHH
Confidence 9998 889999999999999853 2 2 334444331 11111233466766532 11222223333344
Q ss_pred HHHHhChhHHHhhhcCCCCCeEEEEcC------CChHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhc
Q 014974 338 LEDAFGSIYKVQRDRGEISPLSVSIVK------PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 402 (415)
Q Consensus 338 ld~~Ln~~Y~~~R~~g~l~p~~v~~v~------~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 402 (415)
+.+.| .....|-.|.++. .|-..+-.=..+..|. ..+++.+.-+.|++.++.+++
T Consensus 564 ~~~~l---------~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~-~~~~~~~~~~~~p~~~~~~~~ 624 (625)
T TIGR02188 564 VRKEI---------GPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE-EEILGDTSTLEDPSVVEELIE 624 (625)
T ss_pred HHhhc---------CCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC-CCCCCCcccccCHHHHHHHHh
Confidence 44434 1123444555542 3333322211222332 123667777889999988875
No 12
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=98.28 E-value=4.3e-05 Score=83.36 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=121.3
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCC--CCCceeeecCCceEEEeeeCCcccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP--PQTTRFVMLPTAAYFEFLPFDMEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~--~~~~~~~l~~~~~ffEFIp~~~~~~ 207 (415)
++|+.| +.+|. . +.....+++.+| ++++ .+||.||+...+-.....+ +........|+. -.+.++.+
T Consensus 380 ~~Lr~i--~~~G~~l~~~~~~~~~~~~g-~~i~-~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~-~~~i~d~~---- 450 (647)
T PTZ00237 380 SNLKEI--WCGGEVIEESIPEYIENKLK-IKSS-RGYGQTEIGITYLYCYGHINIPYNATGVPSIFI-KPSILSED---- 450 (647)
T ss_pred chheEE--EecCccCCHHHHHHHHHhcC-CCEE-eeechHHhChhhhccCCCCCCCCCCCccCcCCc-eEEEECCC----
Confidence 567733 33443 2 444466777776 8888 8999999743221110000 000111122222 23444421
Q ss_pred cccCCceeecCCcccCceEEEEeccc------ccee---------------eeeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 208 EAVGEETVDFSGVEIGKMYEVVVTTY------RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 208 ~~~~~~~l~l~ele~G~~YelVvTt~------~GLy---------------RYriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
++ ++..|+.+||+++.. .|+| .|++||+.++.. .-.+.|+||.++
T Consensus 451 ----g~-----~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~----dG~l~i~GR~dd~ 517 (647)
T PTZ00237 451 ----GK-----ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDE----NGYYTIVSRSDDQ 517 (647)
T ss_pred ----CC-----CCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECC----CCeEEEEeccCCE
Confidence 22 356899999999742 4555 299999988753 456899999998
Q ss_pred --cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDA 341 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~--d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~ 341 (415)
+.|++++..+|++++.+. + .+.+-.++. +.. ....-+.||-+..+......+. +++.+.|.+.
T Consensus 518 i~~~G~rI~p~eIE~~l~~~-p--------~V~eaavvg~~~~~-~g~~~~a~Vv~~~~~~~~~~~~---~~l~~~i~~~ 584 (647)
T PTZ00237 518 IKISGNKVQLNTIETSILKH-P--------LVLECCSIGIYDPD-CYNVPIGLLVLKQDQSNQSIDL---NKLKNEINNI 584 (647)
T ss_pred EEECCEEeCHHHHHHHHHhC-C--------CceeeEEEeeEcCC-CCCEEEEEEEeccCccccCCCH---HHHHHHHHHH
Confidence 889999999999999853 2 122333322 221 1122234554432100001121 2222333332
Q ss_pred hChhHHHhhhcCCCCCeEEEEcCC---ChHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhc
Q 014974 342 FGSIYKVQRDRGEISPLSVSIVKP---GTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 402 (415)
Q Consensus 342 Ln~~Y~~~R~~g~l~p~~v~~v~~---Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 402 (415)
+ ..+-...-.|-+|.+|+. -.-.+.++..+++=....++..|.-+.|++.++.+++
T Consensus 585 ~-----~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (647)
T PTZ00237 585 I-----TQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDSNYQLPDNVNDSEIFYKIKE 643 (647)
T ss_pred H-----HhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCCCCCCCccccCHHHHHHHHH
Confidence 2 011011234445555442 1112233333332122347888999999999988865
No 13
>PRK09274 peptide synthase; Provisional
Probab=98.24 E-value=0.0002 Score=75.91 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--hHHHHHHHHHhhCC-CCccccccccCceEEEeeCCCCC---
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGE-VPVLGGDYFASECYVGINLDIAQ--- 181 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~-v~~~~~~y~aSEg~igi~~~~~~--- 181 (415)
|.....|.+.....+ .-.|+++. ++.+|. ....+.++++.++. ++++ ..||+||+....-.....
T Consensus 270 P~~~~~l~~~~~~~~------~~~~~lr~--~~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~ 340 (552)
T PRK09274 270 PALLERLGRYGEANG------IKLPSLRR--VISAGAPVPIAVIERFRAMLPPDAEIL-TPYGATEALPISSIESREILF 340 (552)
T ss_pred HHHHHHHHHHhhhcC------CCCchhhE--EEecCCcCCHHHHHHHHHHcCCCceEE-ccccccccceeEeecchhhhc
Confidence 666666655443221 12367773 334443 26677888888874 8888 999999974321111100
Q ss_pred ------CCCC--ceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc--------------------
Q 014974 182 ------PPQT--TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-------------------- 233 (415)
Q Consensus 182 ------~~~~--~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~-------------------- 233 (415)
.... ......|+. -...++.++. ..+..=.-.++..|+.+||+|...
T Consensus 341 ~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~----~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~ 415 (552)
T PRK09274 341 ATRAATDNGAGICVGRPVDGV-EVRIIAISDA----PIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPD 415 (552)
T ss_pred cccccccCCCCcccCccCCCc-eEEEEecccc----ccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhccc
Confidence 0000 011223333 2445553321 000000123466899999999542
Q ss_pred -cceeeeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 234 -RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 234 -~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|-.+|++||++++.. .-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 416 ~~g~~w~~TGDlg~~d~----dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (552)
T PRK09274 416 GQGDVWHRMGDLGYLDA----QGRLWFCGRKAHRVETAGGTLYTIPCERIFNTH 465 (552)
T ss_pred CCCCcEEEcCCEEEEcc----CCcEEEEeccCCeEEECCEEECcHHHHHHHHhC
Confidence 1224899999998754 346899999998 889999999999988864
No 14
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=98.22 E-value=0.00015 Score=77.45 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-E-EeeCCC-CCCCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-V-GINLDI-AQPPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-i-gi~~~~-~~~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
+++++++ +.+|. + ......+++.+| ++++ .+||+||.. + ..+... ...++.. ....|+. ..+.++.+
T Consensus 322 ~~~lr~~--~~gG~~l~~~~~~~~~~~~g-~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~-G~p~~g~-~~~i~d~~-- 393 (570)
T PRK04319 322 LSSLRHI--LSVGEPLNPEVVRWGMKVFG-LPIH-DNWWMTETGGIMIANYPAMDIKPGSM-GKPLPGI-EAAIVDDQ-- 393 (570)
T ss_pred cccceEE--EEcccCCCHHHHHHHHHHhC-CCeE-eceeecccCCEEEecCCCCCCCCCcC-cCCCCCC-EEEEECCC--
Confidence 4677733 33443 2 445566777676 7888 999999963 2 222110 1111111 1123333 45556532
Q ss_pred cccccCCceeecCCcccCceEEEEeccc-----ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC--
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~-----~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~-- 265 (415)
+. ++.+|+.+||+++.. .|.| -|++||++++.. .-.+.|+||.++
T Consensus 394 ------~~-----~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~----~g~l~~~GR~~d~i 458 (570)
T PRK04319 394 ------GN-----ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDE----DGYFWFQGRVDDVI 458 (570)
T ss_pred ------CC-----CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECC----CeeEEEEecCCCEE
Confidence 22 246899999999741 2333 389999998854 337889999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 014974 266 -SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 -l~gEkl~e~~v~~av~~a 283 (415)
+.|+|+++.+|++++.+.
T Consensus 459 ~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 459 KTSGERVGPFEVESKLMEH 477 (570)
T ss_pred EECCEEECHHHHHHHHhhC
Confidence 889999999999998764
No 15
>PRK07514 malonyl-CoA synthase; Validated
Probab=98.21 E-value=7.8e-05 Score=77.63 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=84.9
Q ss_pred ccCCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeC--CCCCCCCCceeeecCCceEEEeeeCC
Q 014974 129 KLWPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINL--DIAQPPQTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 129 ~lWP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~--~~~~~~~~~~~~l~~~~~ffEFIp~~ 203 (415)
...++++ ++..|+ + ......+++.++ .+++ ..||+||+.+.... .....+ .......|+. ....++++
T Consensus 266 ~~~~~lr---~~~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~-~~~G~~~~~~-~v~i~d~~ 338 (504)
T PRK07514 266 EAAAHMR---LFISGSAPLLAETHREFQERTG-HAIL-ERYGMTETNMNTSNPYDGERRA-GTVGFPLPGV-SLRVTDPE 338 (504)
T ss_pred cccccee---eEEecCCCCCHHHHHHHHHHhC-Ccce-eecccccccccccCCccccccC-cccccCCCCc-EEEEEECC
Confidence 3456777 334443 2 445566776666 6777 89999997432211 111111 1122233443 45566643
Q ss_pred cccccccCCceeecCCcccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 204 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 204 ~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
+ +++ +..|+..||+|++. .|+|+ |++||+++... .-.+.|+||.++
T Consensus 339 ~-------~~~-----~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~~~ 402 (504)
T PRK07514 339 T-------GAE-----LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE----RGYVHIVGRGKDL 402 (504)
T ss_pred C-------CCC-----CCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC----CccEEEeccccce
Confidence 2 222 55889999999874 45553 89999998865 336899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~a 283 (415)
+.|++++..+|++++.+.
T Consensus 403 i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 403 IISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred EEeCCeEECHHHHHHHHHhC
Confidence 899999999999998753
No 16
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=98.21 E-value=3.1e-05 Score=82.28 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE--EEeeCCCCC-C
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY--VGINLDIAQ-P 182 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~--igi~~~~~~-~ 182 (415)
|.....|.+.....+ .-.|+|+. ++.+|. + ....+++++.+++++++ .+||+||+. ++++..... .
T Consensus 281 P~~~~~l~~~~~~~~------~~~~~lr~--i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~ 351 (539)
T PRK06334 281 PVFFDYILKTAKKQE------SCLPSLRF--VVIGGDAFKDSLYQEALKTFPHIQLR-QGYGTTECSPVITINTVNSPKH 351 (539)
T ss_pred HHHHHHHHHhhhhcc------cccccccE--EEECCccCCHHHHHHHHHHCCCCeEE-ecccccccCceEEeccCCCCCC
Confidence 666666655432211 12367773 333443 2 55667888888888888 899999974 333211100 0
Q ss_pred CCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee---------------eeeeCCE
Q 014974 183 PQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------RYRLGDI 244 (415)
Q Consensus 183 ~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy---------------RYriGDv 244 (415)
+.. .....|+.. ...++.+. +. .+..|+.+||+|... .|.| -|++||+
T Consensus 352 ~~~-vG~p~~g~~-v~i~d~~~-------~~-----~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~ 417 (539)
T PRK06334 352 ESC-VGMPIRGMD-VLIVSEET-------KV-----PVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDL 417 (539)
T ss_pred CCc-CceecCCCE-EEEEcCCC-------Cc-----cCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCE
Confidence 110 111233332 22333221 22 255899999999653 2221 4999999
Q ss_pred EEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 245 VKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 245 V~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+++.. .-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 418 g~~d~----~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 418 GYVDR----HGELFLKGRLSRFVKIGAEMVSLEALESILMEG 455 (539)
T ss_pred EEECC----CCeEEEEeccCCeEEECCEEECHHHHHHHHHHc
Confidence 88754 346889999998 899999999999999864
No 17
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=98.20 E-value=7.7e-05 Score=78.87 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=80.8
Q ss_pred CCCceEEEEecCCh---HHHHHHHHHhhCCCCccccccccCceEE-EeeCCCCC--CCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~~~~~--~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++++ +++.|+. ......+++.++ ++++ ..||.||+.. +....... .+....+ ..|+. .++....++.
T Consensus 312 ~~l~---~i~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~v~~~d~~ 384 (541)
T TIGR03205 312 SSLA---TIGSGGAPLPVEVANFFERKTG-LKLK-SGWGMTETCSPGTGHPPEGPDKPGSIGL-MLPGI-ELDVVSLDDP 384 (541)
T ss_pred cccc---eEEEccccCCHHHHHHHHHHhC-CCee-cccccccCCcccccCCCCCCCCCCCcce-eccCc-eeEEEecCCC
Confidence 4666 3344432 444566666666 8888 9999999743 21111110 1111112 23333 2333333321
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
++ .+..|+.+||++++. .|.| ||++||+.++.. .-.+.|+||.++ +
T Consensus 385 ------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~i~GR~~~~i~~ 449 (541)
T TIGR03205 385 ------TK-----VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDT----DGYFFLVDRKKDMIIS 449 (541)
T ss_pred ------Cc-----cCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcC----CceEEEEccccCeEEE
Confidence 22 356799999999873 3333 689999998853 236889999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|+++++.+|++++.+.
T Consensus 450 ~G~~i~~~eIE~~l~~~ 466 (541)
T TIGR03205 450 GGFNVYPQMIEQAIYEH 466 (541)
T ss_pred CCEEECHHHHHHHHHhC
Confidence 99999999999998753
No 18
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=98.20 E-value=0.00011 Score=78.20 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=82.3
Q ss_pred CCCceEEEEecCCh-HHHHHHHHHhhCCCCccccccccCceEEEeeCC-CCCCCCCceeeecCCceEEEeeeCCcccccc
Q 014974 132 PNVRYIKCVTTGSM-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLD-IAQPPQTTRFVMLPTAAYFEFLPFDMEKNEA 209 (415)
Q Consensus 132 P~L~~i~~~~~G~~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~-~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~ 209 (415)
+++++ + .+|+. +..+.++++.++ ++++ ..||+||+...+-.. +...++ ......++ .-.++++.+
T Consensus 294 ~~l~~--~-~~g~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~-~vG~~~~~-~~~~i~d~~------ 360 (542)
T PRK06155 294 HRVRV--A-LGPGVPAALHAAFRERFG-VDLL-DGYGSTETNFVIAVTHGSQRPG-SMGRLAPG-FEARVVDEH------ 360 (542)
T ss_pred CceEE--E-EEcCCCHHHHHHHHHHcC-CCEE-eeecccccCccccCCCCCCCCC-CcCccCCC-ceEEEECCC------
Confidence 45552 2 34443 455567777676 8888 999999974322111 111111 11223333 345566432
Q ss_pred cCCceeecCCcccCceEEEEeccc------cce-------------eeeeeCCEEEEeeecCCCcEEEEEeeCCC---cc
Q 014974 210 VGEETVDFSGVEIGKMYEVVVTTY------RGF-------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 267 (415)
Q Consensus 210 ~~~~~l~l~ele~G~~YelVvTt~------~GL-------------yRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~ 267 (415)
++ ++..|+.+||+++.. .|. -+|++||++++.. .-.+.|+||.++ +.
T Consensus 361 --~~-----~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~----dG~l~i~GR~~d~i~~~ 429 (542)
T PRK06155 361 --DQ-----ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDA----DGWFRFVDRIKDAIRRR 429 (542)
T ss_pred --CC-----CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcC----CceEEEEecCCCEEEeC
Confidence 22 355889999999874 232 3699999999853 347899999998 89
Q ss_pred eeecCHHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMESF 283 (415)
Q Consensus 268 gEkl~e~~v~~av~~a 283 (415)
|+|+++.+|++++.+.
T Consensus 430 G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 430 GENISSFEVEQVLLSH 445 (542)
T ss_pred CEEECHHHHHHHHHhC
Confidence 9999999999999753
No 19
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.20 E-value=0.00011 Score=76.51 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC---
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ--- 181 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~--- 181 (415)
|.....|.+...+. ...+++++. ++.+|. + ...++.+++.+ +++++ ..||+||.. ++.......
T Consensus 263 p~~~~~l~~~~~~~------~~~~~~l~~--v~~~Ge~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~ 332 (521)
T PRK06187 263 PTIWQMLLKAPRAY------FVDFSSLRL--VIYGGAALPPALLREFKEKF-GIDLV-QGYGMTETSPVVSVLPPEDQLP 332 (521)
T ss_pred HHHHHHHHcCcCCC------ccCcchhhE--EEEcCcCCCHHHHHHHHHHh-Ccchh-eeeccCccCcccccCCcccccc
Confidence 66666665555331 234567884 445553 2 56667777777 58888 899999953 222111110
Q ss_pred ----CCCCceeeecCCceEEEeeeCCcccccccCCceeecCCccc--CceEEEEeccc---ccee-e------------e
Q 014974 182 ----PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI--GKMYEVVVTTY---RGFY-R------------Y 239 (415)
Q Consensus 182 ----~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~--G~~YelVvTt~---~GLy-R------------Y 239 (415)
... ......|+. .++.++++ +. .+.. |+.+||++++. .|.+ | |
T Consensus 333 ~~~~~~~-~~G~~~~~~-~~~i~~~~--------~~-----~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~ 397 (521)
T PRK06187 333 GQWTKRR-SAGRPLPGV-EARIVDDD--------GD-----ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWL 397 (521)
T ss_pred cccccCC-ccccccCCe-EEEEECCC--------CC-----CCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCce
Confidence 000 111223332 45555533 22 2335 99999999886 3333 3 9
Q ss_pred eeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 240 RLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 240 riGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
++||++++.. ...+.+.||.++ +.|++++..+|++++.+
T Consensus 398 ~tGD~~~~~~----~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 398 HTGDVGYIDE----DGYLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred eccceEEEcC----CCCEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 9999998854 346889999998 89999999999998864
No 20
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=98.19 E-value=9.1e-05 Score=77.10 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=81.6
Q ss_pred cCCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCC-CCCC----C-CceeeecCCceEEEeee
Q 014974 130 LWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI-AQPP----Q-TTRFVMLPTAAYFEFLP 201 (415)
Q Consensus 130 lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~-~~~~----~-~~~~~l~~~~~ffEFIp 201 (415)
-+|.++. .+.+|. ......++.+.+++++++ .+||+||+...+.... .++. . ...-...|+.. ...++
T Consensus 256 ~~~~l~~--~~~~G~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~i~~ 331 (502)
T TIGR01734 256 NYPHLTH--FLFCGEELPVKTAKALLERFPKATIY-NTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMN-LFIMD 331 (502)
T ss_pred cCCcccE--EEEcCCcCCHHHHHHHHHHCCCcEEE-eCccCCcceEEEEEEEccccccccCCccccccccCCCE-EEEEC
Confidence 3577773 344553 256667788888888888 9999999643322110 0000 0 00001111111 11111
Q ss_pred CCcccccccCCceeecCCcccCceEEEEeccc---ccee-----------------eeeeCCEEEEeeecCCCcEEEEEe
Q 014974 202 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 202 ~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-----------------RYriGDvV~V~gf~~~~P~i~F~g 261 (415)
. ++. .+..|+.+||+++.. .|.| -|++||+.++.. . .+.|+|
T Consensus 332 ~--------~~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~---~--~l~i~G 393 (502)
T TIGR01734 332 E--------EGE-----PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITD---G--QLFYQG 393 (502)
T ss_pred C--------CCC-----CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEEC---C--EEEEec
Confidence 1 122 245788999999763 2221 389999998864 3 999999
Q ss_pred eCCC---cceeecCHHHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~a 283 (415)
|.++ +.|+|++..+|++++.+.
T Consensus 394 R~~d~i~~~G~~v~~~~IE~~l~~~ 418 (502)
T TIGR01734 394 RLDFQIKLHGYRIELEDIEFNLRQS 418 (502)
T ss_pred cccCeEEECcEEeCHHHHHHHHHcC
Confidence 9998 899999999999999864
No 21
>PRK07529 AMP-binding domain protein; Validated
Probab=98.18 E-value=7.3e-05 Score=81.17 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=84.6
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCC---CCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~---~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++.+++ ++.+|. + ....+++++.+| ++++ .+||+||+.......+.. .++ ......|+. -+.++..++.
T Consensus 332 ~~slr~--v~~gg~~l~~~l~~~~~~~~g-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~-svG~~~p~~-~v~i~~~d~~ 405 (632)
T PRK07529 332 ISSLRY--ALCGAAPLPVEVFRRFEAATG-VRIV-EGYGLTEATCVSSVNPPDGERRIG-SVGLRLPYQ-RVRVVILDDA 405 (632)
T ss_pred ccceEE--EEEcCCCCCHHHHHHHHHHhC-CcEe-eeecccccCcccccCCccccccCC-CcccccCCc-eEEEEEcCCC
Confidence 467773 334443 2 555677777775 8888 899999975433222211 011 011223333 2455544321
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. ...++..|+.+||+|++. .|.| -|++||+.++.. .-.+.|+||.++ +
T Consensus 406 ------g~--~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~----dG~l~i~GR~~d~i~~ 473 (632)
T PRK07529 406 ------GR--YLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDA----DGYFWLTGRAKDLIIR 473 (632)
T ss_pred ------Cc--ccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcC----CceEEEEecccCEEEe
Confidence 21 123466899999999864 3311 389999998864 347899999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|+++++.+|++++.+
T Consensus 474 ~G~~i~p~eIE~~l~~ 489 (632)
T PRK07529 474 GGHNIDPAAIEEALLR 489 (632)
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999999975
No 22
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=98.16 E-value=8.1e-05 Score=78.93 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=82.1
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEE-EeeCCCCCCC---CCceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPP---QTTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~~~~~~~---~~~~~~l~~~~~ffEFIp~~~ 204 (415)
.|+++++ +.+|. + ...+.++++.++ ++++ ..||+||+.. +... +..+. ........|+. -++.++.+
T Consensus 311 ~~~l~~~--~~~G~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~~G~~~~~~-~v~i~d~~- 383 (547)
T PRK13295 311 VSSLRTF--LCAGAPIPGALVERARAALG-AKIV-SAWGMTENGAVTLTK-LDDPDERASTTDGCPLPGV-EVRVVDAD- 383 (547)
T ss_pred cccceEE--EEecCCCCHHHHHHHHHHhC-CCeE-EeccCCCCCCeeecc-CCCcchhccCccccccCCc-EEEEECCC-
Confidence 4677733 33332 2 566677877774 8998 8999999633 3211 11100 00111122332 24444422
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+ .++..|+..||+|+.. .|.| .|++||++++.. ...+.|+||.++ +
T Consensus 384 -------~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~----~g~l~~~gR~~~~i~~ 447 (547)
T PRK13295 384 -------G-----APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDA----DGYIRISGRSKDVIIR 447 (547)
T ss_pred -------C-----CCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcC----CceEEEEeccCCeEEE
Confidence 2 2355789999999875 3433 299999999854 457999999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|+|++..+|++++.+
T Consensus 448 ~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 448 GGENIPVVEIEALLYR 463 (547)
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999999875
No 23
>PLN02574 4-coumarate--CoA ligase-like
Probab=98.13 E-value=0.00012 Score=78.14 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=84.6
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEE-Ee-eCCCCC-CCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV-GI-NLDIAQ-PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi-~~~~~~-~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++.++.+ +.+|. + ...++++++.+++++++ .+||+||+.. .. ...... ..........|+. -.+.+++++
T Consensus 318 ~~~lr~~--~~gg~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~~~- 392 (560)
T PLN02574 318 LKSLKQV--SCGAAPLSGKFIQDFVQTLPHVDFI-QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNM-QAKVVDWST- 392 (560)
T ss_pred cccceEE--EEecccCCHHHHHHHHHHCCCCcEE-ecccccccCceeecCCCccccCCCCceeeeCCCc-EEEEEeCCC-
Confidence 4566633 33332 2 45567777778778998 8999999642 21 111111 0101223344443 455565442
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
++ .+..|+.+||+|+.. .|.| -|++||+.++.. .-.+.|+||.++
T Consensus 393 ------g~-----~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~----~G~l~i~GR~~d~i~ 457 (560)
T PLN02574 393 ------GC-----LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDE----DGYLYIVDRLKEIIK 457 (560)
T ss_pred ------Cc-----CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEEC----CCeEEEEecchhheE
Confidence 22 256899999999863 2222 289999999864 346889999998
Q ss_pred cceeecCHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~ 282 (415)
+.|++++..+|++++.+
T Consensus 458 ~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 458 YKGFQIAPADLEAVLIS 474 (560)
T ss_pred ECCEEECHHHHHHHHHh
Confidence 89999999999998874
No 24
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=98.12 E-value=0.00039 Score=75.71 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhC-CCCccccccccCceEEEeeCC-CCCCCCCc-eeeecCCceEEEeeeCCcccccccCCceeecCCccc
Q 014974 146 SQYCSKIKYYAG-EVPVLGGDYFASECYVGINLD-IAQPPQTT-RFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 222 (415)
Q Consensus 146 ~~y~~~l~~~~g-~v~~~~~~y~aSEg~igi~~~-~~~~~~~~-~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~ 222 (415)
......+++.++ +++++ ..||.||....+... +..+...+ .....|+.. ...++.+ ++. + .
T Consensus 397 ~~~~~~~~~~~~~~~~~~-~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~-~~ivd~~--------g~~-----~-~ 460 (655)
T PRK03584 397 PEGFDWVYEHVKADVWLA-SISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMA-VEAWDED--------GRP-----V-V 460 (655)
T ss_pred HHHHHHHHHHhCCCceEE-eccChHhhhcccccCCCCCCcCCCccCCCcCCce-eEEECCC--------CCC-----C-C
Confidence 455567777775 58888 899999963222111 11010000 111222221 2233321 222 3 6
Q ss_pred CceEEEEeccc-----ccee------------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHH
Q 014974 223 GKMYEVVVTTY-----RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDL 276 (415)
Q Consensus 223 G~~YelVvTt~-----~GLy------------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v 276 (415)
|+.+||+|+.. .|+| .|++||++++.. .-.+.|+||.++ +.|++++..+|
T Consensus 461 g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR~dd~Ik~~G~rI~p~EI 536 (655)
T PRK03584 461 GEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE----HGGVVIYGRSDATLNRGGVRIGTAEI 536 (655)
T ss_pred CCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC----CCeEEEEeeccCeeecCcEEECHHHH
Confidence 88999999863 2333 178999998853 336899999998 88999999999
Q ss_pred HHHHHHHHHHhhhccCceEEEEEEee-cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCC
Q 014974 277 MSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEI 355 (415)
Q Consensus 277 ~~av~~a~~~l~~~~g~~l~~f~~~~-d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l 355 (415)
++++.+. + + +.+..++. +.......-+.|+++..+ ...+.+..+++.+.+.+.| ....
T Consensus 537 E~~l~~~-p------~--V~ea~vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~~~~~~~L---------~~~~ 595 (655)
T PRK03584 537 YRQVEAL-P------E--VLDSLVIGQEWPDGDVRMPLFVVLAEG---VTLDDALRARIRTTIRTNL---------SPRH 595 (655)
T ss_pred HHHHHhC-C------C--cceEEEEeeEcCCCCEEEEEEEEECCC---CCCcHHHHHHHHHHHHhhC---------CCCc
Confidence 9998753 1 2 22433332 221122344577877542 1122222333444444444 1123
Q ss_pred CCeEEEEcC------CChHH-HHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhc
Q 014974 356 SPLSVSIVK------PGTFD-RLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 402 (415)
Q Consensus 356 ~p~~v~~v~------~Gtf~-~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 402 (415)
.|-.|.+|+ .|--. +.++. +..|...+|..-+.-+.|++.++.+.+
T Consensus 596 ~P~~i~~v~~lP~t~sGKi~r~~lr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (655)
T PRK03584 596 VPDKIIAVPDIPRTLSGKKVELPVKK-LLHGRPVKKAVNRDALANPEALDWFAD 648 (655)
T ss_pred CCCEEEECCCCCCCCCccchHHHHHH-HHcCCCCCCCCCcccccCHHHHHHHHH
Confidence 455666653 22222 22222 224665665546777788888877754
No 25
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.10 E-value=0.0001 Score=78.55 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=83.4
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCC--ceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT--TRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~--~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+++++.| +.+|. ......++++.++ .+++ ..||+||+...+-..+..+... ......|+. ..+.++.+..
T Consensus 335 ~~~lr~i--~~gg~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~- 408 (573)
T PRK05605 335 LSGVRNA--FSGAMALPVSTVELWEKLTG-GLLV-EGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDT-EVRIVDPEDP- 408 (573)
T ss_pred chhccEE--EECCCcCCHHHHHHHHHHhC-CCee-cccccchhchhhhcCCcccCCcCCccccCCCCC-EEEEEcCCCC-
Confidence 4577733 33443 2555566666665 7888 8999999743221111111100 111233443 5666765421
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cc
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 267 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~ 267 (415)
+. .+..|+.+||++++. .|.| .|++||+++... .-.+.|+||.++ +.
T Consensus 409 -----~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~i~gR~dd~i~~~ 474 (573)
T PRK05605 409 -----DE-----TMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEE----DGFIRIVDRIKELIITG 474 (573)
T ss_pred -----Cc-----cCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcC----CCcEEEEeccccceeeC
Confidence 12 255788999999864 3444 499999988853 247899999998 88
Q ss_pred eeecCHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMES 282 (415)
Q Consensus 268 gEkl~e~~v~~av~~ 282 (415)
|+|++..+|++++..
T Consensus 475 G~~v~p~eIE~~l~~ 489 (573)
T PRK05605 475 GFNVYPAEVEEVLRE 489 (573)
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999999975
No 26
>PRK09088 acyl-CoA synthetase; Validated
Probab=98.09 E-value=0.0001 Score=76.58 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred CCCccccccccCceE--EEeeCCCC---CCCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEecc
Q 014974 158 EVPVLGGDYFASECY--VGINLDIA---QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTT 232 (415)
Q Consensus 158 ~v~~~~~~y~aSEg~--igi~~~~~---~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt 232 (415)
+++++ ..||+||+. ++++..+. ..++ ......|+. ..++++.+ +. ++..|+.+||++++
T Consensus 276 g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~-~vG~~~~~~-~~~i~d~~--------~~-----~~~~g~~Gel~v~~ 339 (488)
T PRK09088 276 GIPMV-DGFGMSEAGTVFGMSVDCDVIRAKAG-AAGIPTPTV-QTRVVDDQ--------GN-----DCPAGVPGELLLRG 339 (488)
T ss_pred CCcee-eeecccccccccccCCCcccccccCC-ccccCCCCc-EEEEECCC--------CC-----CCcCCCceEEEEEC
Confidence 48898 799999973 33322211 0111 122334433 45666532 22 24578899999987
Q ss_pred c---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 233 Y---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 233 ~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
. .|.|. |++||++++.. ...+.|+||.++ +.|+|++..++++++.+
T Consensus 340 ~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~ 405 (488)
T PRK09088 340 PNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA----DGFFWVVDRKKDMFISGGENVYPAEIEAVLAD 405 (488)
T ss_pred CccchhhcCChhhhhhhhcCCCCeeecceEEEcC----CCcEEEeccccceEEeCCEEECHHHHHHHHHh
Confidence 4 33332 99999999864 346899999998 88999999999998864
No 27
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.08 E-value=0.00012 Score=77.95 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=81.8
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCC--CCCCceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~--~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
.+.+++ ++.+|. ...-.+++++.++ ++++ ..||+||+...+...+.. .++ ......|+. ..+.++.+
T Consensus 325 ~~~lr~--v~~gG~~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~~-~vG~~~~~~-~v~i~d~~--- 395 (562)
T PRK05677 325 FSALKL--TLSGGMALQLATAERWKEVTG-CAIC-EGYGMTETSPVVSVNPSQAIQVG-TIGIPVPST-LCKVIDDD--- 395 (562)
T ss_pred hhhceE--EEEcCccCCHHHHHHHHHHcC-CCee-ccCCccccCcceeecCccCCCCC-ccCccCCCC-EEEEECCC---
Confidence 356763 333442 2455566777665 8888 999999974322212111 111 122233443 45555532
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. .+..|+.+||+++.. .|.| -|++||+.++.. .-.+.|.||.++ +
T Consensus 396 -----~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~----~G~l~i~GR~~d~i~~ 461 (562)
T PRK05677 396 -----GN-----ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE----DGYMRIVDRKKDMILV 461 (562)
T ss_pred -----CC-----CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC----CCcEEEEecCcCeEEe
Confidence 22 255889999999863 2222 289999988875 235889999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|++++..+|++++.+
T Consensus 462 ~G~~i~p~eiE~~l~~ 477 (562)
T PRK05677 462 SGFNVYPNELEDVLAA 477 (562)
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999999975
No 28
>PRK07788 acyl-CoA synthetase; Validated
Probab=98.08 E-value=0.0002 Score=75.89 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC---CC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA---QP 182 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~---~~ 182 (415)
|....+|.+...+. .-..-.|+++. .+.+|. + +..++++++.+| .+++ ..||+||+.+..-..+. ..
T Consensus 303 P~~~~~l~~~~~~~----~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~ 374 (549)
T PRK07788 303 PVMLSRILDLGPEV----LAKYDTSSLKI--IFVSGSALSPELATRALEAFG-PVLY-NLYGSTEVAFATIATPEDLAEA 374 (549)
T ss_pred HHHHHHHHhCcccc----cCCCCCCceeE--EEEeCCCCCHHHHHHHHHHhC-ccce-eccCcchhchhhccChhhhhhc
Confidence 66666665443320 00112357773 333442 2 556677777777 6777 89999996432111111 00
Q ss_pred CCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccccceee-------------eeeCCEEEEee
Q 014974 183 PQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYR-------------YRLGDIVKVVD 249 (415)
Q Consensus 183 ~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~GLyR-------------YriGDvV~V~g 249 (415)
+. ......++. -++.++.+ ++. +..|+.+||+|++..-+-+ |++||+++...
T Consensus 375 ~~-~vG~~~~~~-~~~i~d~~--------~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~ 439 (549)
T PRK07788 375 PG-TVGRPPKGV-TVKILDEN--------GNE-----VPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDE 439 (549)
T ss_pred CC-CcccCCCCc-EEEEECCC--------cCC-----CCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcC
Confidence 11 112233443 34555532 222 4579999999997533323 68999987653
Q ss_pred ecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 250 FYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 250 f~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.-.+.|+||.++ +.|+|++..+|++++.+.
T Consensus 440 ----~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 472 (549)
T PRK07788 440 ----DGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGH 472 (549)
T ss_pred ----CCCEEEeccCcceEEECCEEECHHHHHHHHHhC
Confidence 347899999998 889999999999999753
No 29
>PRK07867 acyl-CoA synthetase; Validated
Probab=98.07 E-value=0.00021 Score=75.79 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=76.9
Q ss_pred ecCC-hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccccccCCceeecCC
Q 014974 141 TTGS-MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSG 219 (415)
Q Consensus 141 ~~G~-~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~e 219 (415)
.+|. ..+-..++++.+| ++++ ..||+||+.+.+...+..+++ ......|+ ++.++.+. ++.
T Consensus 273 ~gg~~~~~~~~~~~~~~g-~~l~-~~YG~TE~~~~~~~~~~~~~~-~~g~~~~~---~~i~~~~~-------~~~----- 334 (529)
T PRK07867 273 YGNEGAPGDIARFARRFG-CVVV-DGFGSTEGGVAITRTPDTPPG-ALGPLPPG---VAIVDPDT-------GTE----- 334 (529)
T ss_pred ecCCCChHHHHHHHHHhC-CcEE-EeecccccccccccCCCCCCC-CcCCCCCC---EEEEECCC-------CCC-----
Confidence 4443 4444566777675 8888 899999975433222211111 12223343 56665432 122
Q ss_pred cccCc------------eEEEEe-cc---cccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cc
Q 014974 220 VEIGK------------MYEVVV-TT---YRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 267 (415)
Q Consensus 220 le~G~------------~YelVv-Tt---~~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~ 267 (415)
+..|+ .+||++ .. ..|.| +|++||++++.. .-.+.|+||.++ +.
T Consensus 335 ~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~ 410 (529)
T PRK07867 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDA----DGYAYFAGRLGDWMRVD 410 (529)
T ss_pred CCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeC----CCcEEEeccccCeEEEC
Confidence 22333 789998 33 24554 799999988753 346899999998 88
Q ss_pred eeecCHHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMESF 283 (415)
Q Consensus 268 gEkl~e~~v~~av~~a 283 (415)
|+|+++.+|++++.+.
T Consensus 411 G~~v~p~eIE~~l~~~ 426 (529)
T PRK07867 411 GENLGTAPIERILLRY 426 (529)
T ss_pred CEEeCHHHHHHHHHhC
Confidence 9999999999998753
No 30
>PRK06164 acyl-CoA synthetase; Validated
Probab=98.06 E-value=0.00022 Score=75.21 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC-----CCceeeecCCceEEEeeeCCcccccccCCceeecCCcc
Q 014974 147 QYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP-----QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 221 (415)
Q Consensus 147 ~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~-----~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele 221 (415)
...+.++.. +++++ ..||+||+...+........ ..+.+.+.++ ...+++++++ +.+ +.
T Consensus 310 ~~~~~~~~~--~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~i~d~~~-------~~~-----~~ 373 (540)
T PRK06164 310 ELAALARAR--GVPLT-GLYGSSEVQALVALQPATDPVSVRIEGGGRPASPE-ARVRARDPQD-------GAL-----LP 373 (540)
T ss_pred HHHHHHhhc--CCcee-cceeeccccceeeccCCCCCCcceeccCccccCCC-eEEEEecCCC-------CcC-----CC
Confidence 334444443 48888 89999997433222211110 0012222233 3466666443 222 56
Q ss_pred cCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHH
Q 014974 222 IGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 281 (415)
Q Consensus 222 ~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~ 281 (415)
.|+.+||+|++. .|.| -|++||++++.. .-.+.|+||.++ +.|++++..+|++++.
T Consensus 374 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~ 449 (540)
T PRK06164 374 DGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG----DGQFVYQTRMGDSLRLGGFLVNPAEIEHALE 449 (540)
T ss_pred CCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC----CceEEEEeecCCeEEECCEEcCHHHHHHHHH
Confidence 899999999983 2211 389999988764 347889999998 8999999999999997
Q ss_pred H
Q 014974 282 S 282 (415)
Q Consensus 282 ~ 282 (415)
+
T Consensus 450 ~ 450 (540)
T PRK06164 450 A 450 (540)
T ss_pred h
Confidence 4
No 31
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.05 E-value=0.00019 Score=76.02 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC---CCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcc
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 221 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~---~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele 221 (415)
...++.+++.+++.+++ ..||+||+. ++....... ... ......|+ ...+.++.+ .+ ++.
T Consensus 304 ~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i~d~~--------~~-----~~~ 367 (542)
T PRK07786 304 DTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLG-SVGKVIPT-VAARVVDEN--------MN-----DVP 367 (542)
T ss_pred HHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCC-CccccCCC-ceEEEECCC--------CC-----CCc
Confidence 56678888888889988 999999963 222111110 001 01112233 345666532 12 255
Q ss_pred cCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 222 IGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 222 ~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
.|+.+||++... .|.| +|++||+++... .-.+.|+||.++ +.|+|++..+|++++.+
T Consensus 368 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 368 VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDE----EGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred CCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcC----CceEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 788999999653 4444 399999998854 346899999997 88999999999999975
No 32
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.03 E-value=0.0002 Score=76.05 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=80.7
Q ss_pred CCCceEEEEecCCh---HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC---CCCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA---QPPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~---~~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
|+++ ++.+|+. .....++++.+| ++++ ..||+||+...+-.... ..+....+ ..|+. -.+.++.+
T Consensus 325 ~~lr---~~~~gg~~~~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~~~~-- 395 (560)
T PRK08974 325 SSLK---LSVGGGMAVQQAVAERWVKLTG-QYLL-EGYGLTECSPLVSVNPYDLDYYSGSIGL-PVPST-EIKLVDDD-- 395 (560)
T ss_pred ccee---EEEecCccCCHHHHHHHHHHhC-CcEE-eeecccccCceeeccCCCCcccCCcccc-CcCCC-EEEEECCC--
Confidence 5666 4444542 334456666665 8888 89999996433211111 00111112 23332 34555432
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---cceee-------------eeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. ++..|+.+||+++.. .|.|. |++||+++... .-.+.|+||.++ +
T Consensus 396 ------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~~ 460 (560)
T PRK08974 396 ------GN-----EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDE----EGFLRIVDRKKDMILV 460 (560)
T ss_pred ------CC-----CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcC----CceEEEEecccceEEe
Confidence 22 356899999999874 33332 99999998753 346899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|+|++..+|++++.+.
T Consensus 461 ~G~~i~~~~IE~~l~~~ 477 (560)
T PRK08974 461 SGFNVYPNEIEDVVMLH 477 (560)
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999999753
No 33
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=98.03 E-value=0.00026 Score=73.49 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=80.0
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEe---eCCCCCCC-CC--ceeeecCCceEEEeeeC
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQPP-QT--TRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi---~~~~~~~~-~~--~~~~l~~~~~ffEFIp~ 202 (415)
.|+++.| +.+|+ .+....++++.+++++++ ..||+||....+ +..+.... .. ......++... ..++.
T Consensus 259 ~~~l~~i--~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~i~d~ 334 (503)
T PRK04813 259 LPNLTHF--LFCGEELPHKTAKKLLERFPSATIY-NTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPL-LIIDE 334 (503)
T ss_pred CCCceEE--EEecCcCCHHHHHHHHHHCCCceEE-eCcccchheeEEEEEEecccccccCCCCcccccCCCCEE-EEECC
Confidence 4677744 33443 356668888888778888 999999963222 11111000 00 00111122111 11221
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc--------------------cceeeeeeCCEEEEeeecCCCcEEEEEee
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY--------------------RGFYRYRLGDIVKVVDFYNSSPQVEFVMR 262 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~--------------------~GLyRYriGDvV~V~gf~~~~P~i~F~gR 262 (415)
++. .+..|+.+||+++.. .|.=-|++||++++ . .-.+.|.||
T Consensus 335 --------~~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~----~g~~~~~GR 396 (503)
T PRK04813 335 --------EGT-----KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E----DGLLFYQGR 396 (503)
T ss_pred --------CCC-----CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e----CCeEEEecc
Confidence 122 245788899999873 22113999999998 2 237899999
Q ss_pred CCC---cceeecCHHHHHHHHHHH
Q 014974 263 APK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 263 ~~~---l~gEkl~e~~v~~av~~a 283 (415)
.++ +.|+|++..+|++++.+.
T Consensus 397 ~~d~i~~~G~~v~~~~iE~~l~~~ 420 (503)
T PRK04813 397 IDFQIKLNGYRIELEEIEQNLRQS 420 (503)
T ss_pred ccceEEECcEEeCHHHHHHHHHhC
Confidence 998 889999999999988753
No 34
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=98.03 E-value=0.00082 Score=72.67 Aligned_cols=129 Identities=15% Similarity=0.084 Sum_probs=79.7
Q ss_pred CCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEe-eCCCC-----CCCCCceeeecCCceEEEeeeC
Q 014974 132 PNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIA-----QPPQTTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 132 P~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi-~~~~~-----~~~~~~~~~l~~~~~ffEFIp~ 202 (415)
+.|+ .+.+|| + ......+++.++ ++++ ..||.||....+ ...+. ..++. .....|+.. .+.++.
T Consensus 355 ~~lr---~i~~~Ge~l~~~~~~~~~~~~~-~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~G~p~~g~~-~~i~d~ 427 (629)
T PRK10524 355 SSLR---ALFLAGEPLDEPTASWISEALG-VPVI-DNYWQTETGWPILAIARGVEDRPTRLGS-PGVPMYGYN-VKLLNE 427 (629)
T ss_pred hhee---EEEEeCCCCCHHHHHHHHHhcC-CCeE-eccccccccchhhcCCCCcccCcCCCCC-cccCcCCce-EEEEeC
Confidence 5666 334443 2 444566777676 7888 899999974211 11110 00100 111223332 445543
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc------ccee-----------------eeeeCCEEEEeeecCCCcEEEE
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY------RGFY-----------------RYRLGDIVKVVDFYNSSPQVEF 259 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~------~GLy-----------------RYriGDvV~V~gf~~~~P~i~F 259 (415)
++ +++ +..|+.+||+++.. .|+| -|++||+.++.. .-.+.|
T Consensus 428 ~~-------g~~-----~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~----dG~l~i 491 (629)
T PRK10524 428 VT-------GEP-----CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDA----DGYYFI 491 (629)
T ss_pred CC-------CCC-----CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcC----CCcEEE
Confidence 22 233 56899999999863 1221 399999988743 346899
Q ss_pred EeeCCC---cceeecCHHHHHHHHHHH
Q 014974 260 VMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 260 ~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+||.++ +.|+++...+|+++|.+.
T Consensus 492 ~GR~dd~i~~~G~ri~p~eIE~~l~~~ 518 (629)
T PRK10524 492 LGRTDDVINVAGHRLGTREIEESISSH 518 (629)
T ss_pred EEEecCeEEeCCEEeCHHHHHHHHHhC
Confidence 999998 889999999999999753
No 35
>PLN02654 acetate-CoA ligase
Probab=98.02 E-value=0.0028 Score=69.43 Aligned_cols=225 Identities=13% Similarity=0.098 Sum_probs=119.9
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCC--CCccccccccCceEEE-e-eCC---CCCCCCCceeeecCCceEEEeeeC
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGE--VPVLGGDYFASECYVG-I-NLD---IAQPPQTTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~--v~~~~~~y~aSEg~ig-i-~~~---~~~~~~~~~~~l~~~~~ffEFIp~ 202 (415)
+.|++| +.+|. . +.-.+++.+.+|. +++. ..||.||+... + +.. +.. ++. .....|+.. ...++.
T Consensus 397 ~~Lr~i--~~~Ge~l~~~~~~~~~~~~g~~~~~i~-~~yg~TE~g~~~~~~~~~~~~~~-~gs-~G~p~~g~~-v~i~d~ 470 (666)
T PLN02654 397 KSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQK-PGS-ATFPFFGVQ-PVIVDE 470 (666)
T ss_pred hheeEE--EEecCCCCHHHHHHHHHHhCCCCCcee-ccccccccCCeeeccCCCCCCCC-CCc-cCCCCCCce-EEEECC
Confidence 466633 33442 2 3444567777774 7877 99999996321 1 110 111 111 111223322 222321
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc-----ccee----------------eeeeCCEEEEeeecCCCcEEEEEe
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~-----~GLy----------------RYriGDvV~V~gf~~~~P~i~F~g 261 (415)
+ ++ ++..|+.+||+++.. .|+| -|++||+.++.. .-.+.|+|
T Consensus 471 ~--------g~-----~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~----dG~l~i~G 533 (666)
T PLN02654 471 K--------GK-----EIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDK----DGYYWLTG 533 (666)
T ss_pred C--------CC-----CCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECC----CCcEEEee
Confidence 1 22 245677899999751 2322 289999998863 23589999
Q ss_pred eCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCS 336 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~--d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~ 336 (415)
|.++ +.|++++..+|++++.+.. + +.+-.++. +... ...-..|+.+..+ ...+.+..+++..
T Consensus 534 R~dd~I~~~G~ri~p~EIE~~l~~~p-------~--V~eaaVvg~~d~~~-ge~~~a~Vvl~~~---~~~~~~l~~~l~~ 600 (666)
T PLN02654 534 RVDDVINVSGHRIGTAEVESALVSHP-------Q--CAEAAVVGIEHEVK-GQGIYAFVTLVEG---VPYSEELRKSLIL 600 (666)
T ss_pred eccCeEEeCCEEECHHHHHHHHHhCC-------C--eeeEEEEeeEcCCC-CeEEEEEEEECCC---CCCCHHHHHHHHH
Confidence 9998 8899999999999998531 1 23444332 2211 1233456666432 1122222233334
Q ss_pred HHHHHhChhHHHhhhcCCCCCeEEEEcC---CChHHHHHHHHHh---cCCCCCCCCCCcccCCHHHHHHHhc
Q 014974 337 SLEDAFGSIYKVQRDRGEISPLSVSIVK---PGTFDRLLQVAIE---KGAPASQYKPPKIVRNREIVEFMEG 402 (415)
Q Consensus 337 ~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~---~Gtf~~~~~~~~~---~G~~~~Q~K~Pr~~~~~~~~~~L~~ 402 (415)
.+.+.| .....|-+|++|+ ...=.+.++..++ .|. ..+.+.+.-+.|++.++.+.+
T Consensus 601 ~~~~~L---------~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 662 (666)
T PLN02654 601 TVRNQI---------GAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ-LDELGDTSTLADPGVVDQLIA 662 (666)
T ss_pred HHHHhC---------CCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC-CCCCCCcccccCHHHHHHHHH
Confidence 444433 2233455676663 1111233333333 332 236778888999999888765
No 36
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.00 E-value=0.00031 Score=73.12 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=81.4
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCce-EE-EeeCCCCCCC--CCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASEC-YV-GINLDIAQPP--QTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg-~i-gi~~~~~~~~--~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
+++++ ++.+|. + ...+.++++.+|..+++ ..||+||+ .+ ..+....... ........++. -++.++.+
T Consensus 281 ~~l~~--v~~~g~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~~-- 354 (513)
T PRK07656 281 SSLRL--AVTGAASMPVALLERFESELGVDIVL-TGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGV-ENKIVNEL-- 354 (513)
T ss_pred cceee--EEecCCCCCHHHHHHHHHHcCCCceE-eEEccccCCCceeecCccccccccCCCccccCCCc-EEEEECCC--
Confidence 56663 334443 3 55567777778733777 99999997 22 2221100000 00112233433 34555422
Q ss_pred cccccCCceeecCCcccCceEEEEecccc---ce----------ee----eeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF----------YR----YRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~~---GL----------yR----YriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
+ ..+..|+.+||+++... |. ++ |++||+.+... .-.+.|+||.++
T Consensus 355 ------~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~~~~~GR~~d~i~ 419 (513)
T PRK07656 355 ------G-----EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE----EGYLYIVDRKKDMFI 419 (513)
T ss_pred ------C-----CCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC----CeeEEEEecccceEE
Confidence 2 23568999999998753 21 23 89999888853 347899999998
Q ss_pred cceeecCHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~ 282 (415)
+.|+|++..+|++++.+
T Consensus 420 ~~G~~v~~~~iE~~l~~ 436 (513)
T PRK07656 420 VGGFNVYPAEVEEVLYE 436 (513)
T ss_pred eCCEEeCHHHHHHHHHh
Confidence 89999999999999874
No 37
>PRK06145 acyl-CoA synthetase; Validated
Probab=98.00 E-value=0.00032 Score=73.00 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCC---CC-CCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI---AQ-PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~---~~-~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++++. ++.+|. + ...+.++++.+++++++ .+||+||+........ .. .++ ......|+. -.+.++.+
T Consensus 264 ~~l~~--~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~~~~-~~~i~~~~-- 336 (497)
T PRK06145 264 DSLAW--CIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCSGDTLMEAGREIEKIG-STGRALAHV-EIRIADGA-- 336 (497)
T ss_pred ccceE--EEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCCcceeccCccccccCC-CcccCCCCc-eEEEECCC--
Confidence 56763 334443 2 55668888888888888 8999999754221110 00 111 122233333 23444321
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
.. .+..|+..||+++.. .|.| .|++||+++... .-.+.|+||.++ +
T Consensus 337 ------~~-----~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~~~i~~ 401 (497)
T PRK06145 337 ------GR-----WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDE----EGFLYLTDRKKDMIIS 401 (497)
T ss_pred ------CC-----CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcC----CCcEEEeccccceEEe
Confidence 22 245788999999874 4454 399999988854 336899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|++++..+|++++.+.
T Consensus 402 ~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 402 GGENIASSEVERVIYEL 418 (497)
T ss_pred CCeEECHHHHHHHHHhC
Confidence 89999999999998764
No 38
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=98.00 E-value=0.0016 Score=70.61 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=79.7
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEe-eCCCCC-----CCCCceeeecCCceEEEeeeC
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQ-----PPQTTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi-~~~~~~-----~~~~~~~~l~~~~~ffEFIp~ 202 (415)
.+.|+++ +.+|. + ......+++.+| .+++ .+||.||....+ ...+.. ..+. .....|+.. ...++.
T Consensus 353 l~~lr~~--~~gGe~l~~~~~~~~~~~~~-~~~~-~~yG~TE~~~~~~~~~~~~~~~~~~~gs-~G~p~~g~~-v~i~d~ 426 (628)
T TIGR02316 353 LSSLHWL--FLAGEPLDEPTAHWITDGLG-KPVI-DNYWQTETGWPVLAIMPGLDLKPVKLGS-PGLPMYGYH-LRVLDE 426 (628)
T ss_pred ccceeEE--EEecCCCCHHHHHHHHHHhC-CCEE-ecccccccCceeecCCCCCCcCCCCCCC-cccCcCCce-EEEEEC
Confidence 3567733 33443 2 444566667676 7787 899999974322 111110 0110 112233332 233433
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc------ccee-----------------eeeeCCEEEEeeecCCCcEEEE
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY------RGFY-----------------RYRLGDIVKVVDFYNSSPQVEF 259 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~------~GLy-----------------RYriGDvV~V~gf~~~~P~i~F 259 (415)
++ +++ +..|+.+||+++.. .|+| .|++||+.++.. .=.+.|
T Consensus 427 ~~-------g~~-----~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~----dG~l~i 490 (628)
T TIGR02316 427 AT-------GRP-----CGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDE----DGYTFI 490 (628)
T ss_pred CC-------CCC-----CCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcC----CCcEEE
Confidence 21 223 45789999999764 2222 399999998753 235889
Q ss_pred EeeCCC---cceeecCHHHHHHHHHHH
Q 014974 260 VMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 260 ~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+||.++ +.|+++...+|+++|.+.
T Consensus 491 ~GR~dd~ik~~G~rv~~~eIE~~l~~~ 517 (628)
T TIGR02316 491 LGRTDDVINVAGHRLGTREIEESVSSH 517 (628)
T ss_pred EEcCcceEEeCCEEeCHHHHHHHHHhC
Confidence 999998 899999999999999753
No 39
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.99 E-value=0.00039 Score=73.41 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCC------
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI------ 179 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~------ 179 (415)
|..+..|.+...... ...-+|.+++| +.+|. ....++.+++.++ ++++ .+||.||+...+-..+
T Consensus 275 P~~~~~l~~~~~~~~----~~~~~~~lr~i--~~~G~~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~ 346 (534)
T PRK05852 275 PTIHQILLERAATEP----SGRKPAALRFI--RSCSAPLTAETAQALQTEFA-APVV-CAFGMTEATHQVTTTQIEGIGQ 346 (534)
T ss_pred hHHHHHHHhhccccc----ccccCCCeeEE--EECCCCCCHHHHHHHHHHhC-CChh-hccCccccchhhhcCCcccccc
Confidence 666666655432210 12335777733 22332 2555677888786 8888 7999999642211110
Q ss_pred -CCCCCCceeee-cCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEecccc---cee-------------eeee
Q 014974 180 -AQPPQTTRFVM-LPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY-------------RYRL 241 (415)
Q Consensus 180 -~~~~~~~~~~l-~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~---GLy-------------RYri 241 (415)
..+......+- .+ ....+.++.+ ++ ++.+|+..||+|+... |.| .|++
T Consensus 347 ~~~~~~~~g~~g~~~-g~~~~i~d~~--------g~-----~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~T 412 (534)
T PRK05852 347 TENPVVSTGLVGRST-GAQIRIVGSD--------GL-----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRT 412 (534)
T ss_pred ccCcccccccCCCCC-CCeEEEECCC--------CC-----CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCccc
Confidence 00000011110 22 3345556532 22 2558999999997752 333 2889
Q ss_pred CCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 242 GDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 242 GDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
||+.+... --.+.|+||.++ +.|++++..++++++.+
T Consensus 413 GD~~~~d~----dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~ 452 (534)
T PRK05852 413 GDLGSLSA----AGDLSIRGRIKELINRGGEKISPERVEGVLAS 452 (534)
T ss_pred CceEEEeC----CCcEEEEecchhhEEECCEEECHHHHHHHHHh
Confidence 99998863 236899999998 78999999999999975
No 40
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.96 E-value=7.8e-05 Score=75.12 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEe---eCCCCCC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQP 182 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi---~~~~~~~ 182 (415)
|.....|.+... ...++++.| +.+|+ + +..++.+++.+++++++ ..||+||+...+ +......
T Consensus 219 p~~~~~l~~~~~---------~~~~~l~~v--~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~~~~~~~~~~~~~ 286 (408)
T TIGR01733 219 PSLLALLAAALP---------PALASLRLV--ILGGEALTPALVDRWRARGPGARLI-NLYGPTETTVWSTATLVDADDA 286 (408)
T ss_pred HHHHHHHHHhhh---------hcccCceEE--EEeCccCCHHHHHHHHHhCCCcEEE-ecccCCceEEEEEEEEcCcccc
Confidence 655555544332 224577743 33443 3 66678888888888888 899999964322 1221111
Q ss_pred CCC---ceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee-------------------
Q 014974 183 PQT---TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------- 237 (415)
Q Consensus 183 ~~~---~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy------------------- 237 (415)
... ..-...|+. ....++++ . ..+..|+.+||+++.. .|.|
T Consensus 287 ~~~~~~~~G~~~~~~-~~~i~~~~--------~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 352 (408)
T TIGR01733 287 PRESPVPIGRPLANT-RLYVLDDD--------L-----RPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGD 352 (408)
T ss_pred CCccccccCcccCCc-eEEEECCC--------C-----CCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCC
Confidence 000 000112222 22233221 1 2356899999999873 2222
Q ss_pred ---eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 238 ---RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 238 ---RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
.|++||+.++.. .-.+.|+||.++ +.|+|++..+|++++..
T Consensus 353 ~~~~~~TGDl~~~d~----~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 353 GARLYRTGDLVRYLP----DGNLEFLGRIDDQVKIRGYRIELGEIEAALLR 399 (408)
T ss_pred CceEEECCceEEEcC----CCCEEEeeccCCEEEeCeEEechHHHHHHHhc
Confidence 699999988864 236999999998 88999999999999874
No 41
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.96 E-value=0.00029 Score=74.70 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhCCCCccccccccCce-EEEeeCCCCCCC-C----CceeeecCCceEEEeeeCCcccccccCCceeecCC
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIAQPP-Q----TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSG 219 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg-~igi~~~~~~~~-~----~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~e 219 (415)
...+.++++.+++++++ ..||+||+ .+++........ . .......|+.. .+.++.+. ++ .
T Consensus 317 ~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-v~i~d~~~-------~~-----~ 382 (546)
T PLN02330 317 PELLTAFEAKFPGVQVQ-EAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLE-VKFIDPDT-------GR-----S 382 (546)
T ss_pred HHHHHHHHHHcCCCeEE-ecccccccccceecCCCccccccccccCccccccCCcE-EEEEeCCC-------Cc-----c
Confidence 56667888888779999 99999996 333321100000 0 00111223322 44554332 22 2
Q ss_pred cccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHH
Q 014974 220 VEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 279 (415)
Q Consensus 220 le~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~a 279 (415)
+..|+.+||+++.. .|.| -|++||+.++..- =.+.|.||.++ +.|+|++..+|+.+
T Consensus 383 ~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~~~GR~~d~i~~~G~~v~~~~iE~~ 458 (546)
T PLN02330 383 LPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD----GDIFIVDRIKELIKYKGFQVAPAELEAI 458 (546)
T ss_pred CCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCC----CcEEEEechHHhhhcCCEEECHHHHHHH
Confidence 45899999999753 2322 2899999988641 25789999997 88999999999999
Q ss_pred HHHH
Q 014974 280 MESF 283 (415)
Q Consensus 280 v~~a 283 (415)
+.+.
T Consensus 459 l~~~ 462 (546)
T PLN02330 459 LLTH 462 (546)
T ss_pred HHhC
Confidence 9753
No 42
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.95 E-value=0.00038 Score=72.86 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=81.0
Q ss_pred CCCceEEEEecCC---hHHHHHHHHHhhCCCCccccccccCceEE-EeeC-C-CCCCCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINL-D-IAQPPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~-~-~~~~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++++ .+++|+ ....++++++.++ ++++ .+||+||+.. +... . ....++.. ....|+.. ++.++.+
T Consensus 271 ~~l~---~v~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~-G~~~~~~~-~~i~d~~-- 341 (509)
T PRK12406 271 SSLR---HVIHAAAPCPADVKRAMIEWWG-PVIY-EYYGSTESGAVTFATSEDALSHPGTV-GKAAPGAE-LRFVDED-- 341 (509)
T ss_pred Ccee---EEEEcCCCCCHHHHHHHHHHcC-CcEE-eeccccccCceEecCcccccccCCCc-CccCCCcE-EEEECCC--
Confidence 5666 334443 2566678888776 7777 8999999643 2211 0 00111111 22334432 4555422
Q ss_pred cccccCCceeecCCcccCceEEEEecccc----cee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTYR----GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~~----GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
+ ..+..|+.+||+++..+ |.| -|++||+++... .-.+.|+||.++
T Consensus 342 ------~-----~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~ik 406 (509)
T PRK12406 342 ------G-----RPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDA----DGYLFLCDRKRDMVI 406 (509)
T ss_pred ------C-----CCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcC----CceEEEeecccceEE
Confidence 2 23568999999997642 333 278999888765 235789999998
Q ss_pred cceeecCHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~ 282 (415)
+.|++++..+|++++.+
T Consensus 407 ~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 407 SGGVNIYPAEIEAVLHA 423 (509)
T ss_pred ECCEEECHHHHHHHHHh
Confidence 89999999999999975
No 43
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.94 E-value=0.00065 Score=71.81 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=83.0
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCC----CceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ----TTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~----~~~~~l~~~~~ffEFIp~~~ 204 (415)
+++++.| +.+|. .....+++.+.++..++. ..||+||+....-....++.. .......|+ ..++.++.+
T Consensus 316 ~~~lr~i--~~~G~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~-~~~~i~d~~- 390 (558)
T PRK12583 316 LSSLRTG--IMAGAPCPIEVMRRVMDEMHMAEVQ-IAYGMTETSPVSLQTTAADDLERRVETVGRTQPH-LEVKVVDPD- 390 (558)
T ss_pred chhheEE--EecCCCCCHHHHHHHHHHcCCccee-ccccccccccceeccCcccccccccCCCCccCCC-CeEEEECCC-
Confidence 4677733 44553 255567777778766777 899999974321111111000 001112333 345566533
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC--
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 265 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~-- 265 (415)
+ .++..|+.+||++++. .|.| .|++||++++.. .-.+.|.||.+.
T Consensus 391 -------~-----~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----dg~l~i~GR~~~~i 454 (558)
T PRK12583 391 -------G-----ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE----QGYVRIVGRSKDMI 454 (558)
T ss_pred -------C-----CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC----CccEEEEeccccee
Confidence 1 2356899999999774 2332 389999998754 237899999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 014974 266 -SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 -l~gEkl~e~~v~~av~~ 282 (415)
+.|+|++..+|++++.+
T Consensus 455 ~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 455 IRGGENIYPREIEEFLFT 472 (558)
T ss_pred EECCEEeCHHHHHHHHHh
Confidence 88999999999998864
No 44
>PRK05850 acyl-CoA synthetase; Validated
Probab=97.93 E-value=0.00044 Score=73.77 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=48.4
Q ss_pred CcccCceEEEEeccc---ccee-------------------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cc
Q 014974 219 GVEIGKMYEVVVTTY---RGFY-------------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 267 (415)
Q Consensus 219 ele~G~~YelVvTt~---~GLy-------------------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~ 267 (415)
++..|+.+||.|... .|.| -|++||+.++.. + .+.|+||.++ +.
T Consensus 391 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~---G--~l~~~GR~~d~i~~~ 465 (578)
T PRK05850 391 ECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISE---G--ELFIVGRIKDLLIVD 465 (578)
T ss_pred CCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEEC---C--EEEEEcccccEEEEC
Confidence 467899999999774 2332 489999987632 2 6899999998 88
Q ss_pred eeecCHHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMESF 283 (415)
Q Consensus 268 gEkl~e~~v~~av~~a 283 (415)
|++++..+|+.++.+.
T Consensus 466 G~~i~p~eIE~~l~~~ 481 (578)
T PRK05850 466 GRNHYPDDIEATIQEI 481 (578)
T ss_pred CeecCHHHHHHHHHHh
Confidence 9999999999999864
No 45
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.92 E-value=0.00083 Score=71.02 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=77.1
Q ss_pred cccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHH
Q 014974 220 VEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 280 (415)
Q Consensus 220 le~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av 280 (415)
+..|+.+||+++.. .|.| .|++||++++.. .-.+.|+||.++ +.|+|++..+|++++
T Consensus 381 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l 456 (545)
T PRK07768 381 LPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTE----EGEVVVCGRVKDVIIMAGRNIYPTDIERAA 456 (545)
T ss_pred CCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEec----CCEEEEEccccceEEECCEecCHHHHHHHH
Confidence 56888999999764 2322 499999998853 236899999998 889999999999999
Q ss_pred HHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCeEE
Q 014974 281 ESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSV 360 (415)
Q Consensus 281 ~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v 360 (415)
.+. . .+....+.-+. .+.........+++|.... .+...+.++...+.+.+ +..-...|-++
T Consensus 457 ~~~-~---~v~~~~vv~~~--~~~~~~~~~~~~~v~~~~~-----~~~~~~~~l~~~~~~~l-------~~~~~~~p~~v 518 (545)
T PRK07768 457 ARV-E---GVRPGNAVAVR--LDAGHSREGFAVAVESNAF-----EDPAEVRRIRHQVAHEV-------VAEVGVRPRNV 518 (545)
T ss_pred HhC-c---ccccceEEEEE--ecCCCCceEEEEEEEeccc-----ccHHHHHHHHHHHHHHH-------HHHhCCCccEE
Confidence 764 2 21221111111 1111112245667765422 22333344555555544 22223567778
Q ss_pred EEcCCChHH
Q 014974 361 SIVKPGTFD 369 (415)
Q Consensus 361 ~~v~~Gtf~ 369 (415)
.+++.+.|.
T Consensus 519 ~~v~~~~lP 527 (545)
T PRK07768 519 VVLGPGSIP 527 (545)
T ss_pred EEeCCCcCC
Confidence 888766664
No 46
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.91 E-value=0.00056 Score=72.20 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=81.3
Q ss_pred CCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC-CCCCCceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~-~~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+++++ ++.+|| + ....+++.+.++ ++++ .+||.||+....-..+. ...........|+.. ...++.++
T Consensus 304 ~~~l~---~~~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~-~~i~d~~~-- 375 (546)
T PRK08314 304 LSSLR---YIGGGGAAMPEAVAERLKELTG-LDYV-EGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVD-ARVIDPET-- 375 (546)
T ss_pred chhhh---eeeeccccCCHHHHHHHHHHcC-CcEE-ecccccccccceecCCCcCCCCCccCcccCCeE-EEEEeCCC--
Confidence 45676 334443 3 445567777676 7888 99999997443222111 000001122233332 23333221
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---ccee-----------------eeeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-----------------RYriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
+ ..++.|+.+||+|... .|.| -|++||++++.. .-.+.|+||.++
T Consensus 376 -----~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~d~ 441 (546)
T PRK08314 376 -----L-----EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE----EGYFFITDRLKRM 441 (546)
T ss_pred -----C-----cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC----CCcEEEEecchhh
Confidence 2 2356899999999753 2222 489999988753 357899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~a 283 (415)
+.|+|++..+|++++.+.
T Consensus 442 i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 442 INASGFKVWPAEVENLLYKH 461 (546)
T ss_pred EEeCCEEECHHHHHHHHHhC
Confidence 889999999999999854
No 47
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=97.90 E-value=0.00033 Score=74.04 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=80.7
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCCCC---CCceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~~~---~~~~~~l~~~~~ffEFIp~~~ 204 (415)
.|+++. ++.+|. + ...+.++++.+| ++++ ..||+||+. ++.. .+.... ........|+. -++.++.+
T Consensus 309 ~~~l~~--~~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~-~~~~~~~~~~~~~G~~~~g~-~v~i~~~~- 381 (538)
T TIGR03208 309 VPSLFT--FLCAGAPIPGILVERAWELLG-ALIV-SAWGMTENGAVTVT-EPDDALEKASTTDGRPLPGV-EVKVIDAN- 381 (538)
T ss_pred CCcceE--EEEcCCCCCHHHHHHHHHHcC-CeEE-eeeccCcCCCcccc-CcccchhhccCcccccCCCC-EEEEECCC-
Confidence 367773 344443 2 445566666665 7888 999999963 3221 111000 00011123332 34444422
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. .+..|+.+||++++. .|.| .|++||++++.. .-.+.|+||.++ +
T Consensus 382 -------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR~~~~i~~ 445 (538)
T TIGR03208 382 -------GA-----KLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDA----EGYIRINGRSKDVIIR 445 (538)
T ss_pred -------CC-----CCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECC----CCcEEEEeccCceEEE
Confidence 22 255899999999875 3444 399999998853 346899999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|+|+.+.+|++++.+
T Consensus 446 ~G~~v~p~eIE~~l~~ 461 (538)
T TIGR03208 446 GGENIPVVEIENLLYQ 461 (538)
T ss_pred CCEEECHHHHHHHHhc
Confidence 8999999999999875
No 48
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.89 E-value=0.00027 Score=73.76 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC---CCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~---~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++++ .++.+|+ + ....+.+++.+++.+++ ..||+||+. ++.-..+.. .... .....++. ....++.+
T Consensus 286 ~~l~--~~~~gg~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~-~G~~~~~~-~~~i~~~~-- 358 (523)
T PRK08316 286 SSLR--KGYYGASIMPVEVLKELRERLPGLRFY-NCYGQTEIAPLATVLGPEEHLRRPGS-AGRPVLNV-ETRVVDDD-- 358 (523)
T ss_pred ccce--EEEEcCCcCCHHHHHHHHHHcCCCcee-eeecccccCccccccCccccccccCC-cccCCCCc-EEEEEcCC--
Confidence 4566 3344443 2 45568888888888998 899999952 222111100 0000 01112221 22233321
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+.. +..|+.+||+++.. .|.| .|++||+++... ...+.|+||.++ +
T Consensus 359 ------~~~-----~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~i~gR~~~~i~~ 423 (523)
T PRK08316 359 ------GND-----VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDE----EGYITVVDRKKDMIKT 423 (523)
T ss_pred ------CCC-----CCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcC----CceEEEecccccEEEe
Confidence 222 44688999999874 2333 399999888754 457899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|+|++..+|++++.+.
T Consensus 424 ~G~~i~~~~iE~~l~~~ 440 (523)
T PRK08316 424 GGENVASREVEEALYTH 440 (523)
T ss_pred CCeEECHHHHHHHHHhC
Confidence 89999999999988653
No 49
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=97.89 E-value=0.00051 Score=75.01 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=88.8
Q ss_pred cCceEEEEeccc-----ccee------e------------eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHH
Q 014974 222 IGKMYEVVVTTY-----RGFY------R------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERD 275 (415)
Q Consensus 222 ~G~~YelVvTt~-----~GLy------R------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~ 275 (415)
.|+.+||+++.. .|+| | |++||++++.. .-.+.|+||.++ +.|++++..+
T Consensus 461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~----dG~l~i~GR~dd~I~~~G~ri~p~E 536 (652)
T TIGR01217 461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP----RGGIVIHGRSDSTLNPQGVRMGSAE 536 (652)
T ss_pred CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC----CCcEEEEecccCeEecCCEEcCHHH
Confidence 488999999863 2333 1 78899998864 236899999998 8899999999
Q ss_pred HHHHHHHHHHHhhhccCceEEEEEEee-cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCC
Q 014974 276 LMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGE 354 (415)
Q Consensus 276 v~~av~~a~~~l~~~~g~~l~~f~~~~-d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~ 354 (415)
|++++.+... +.+-.++. +.......-+.||.+..+ ...+.+..+++.+.+.+.| ...
T Consensus 537 IE~~l~~~p~---------V~eaavvg~~~~~~ge~~~afVv~~~~---~~~~~~~~~~l~~~~~~~l---------~~~ 595 (652)
T TIGR01217 537 IYNAVERLDE---------VRESLCIGQEQPDGGYRVVLFVHLAPG---ATLDDALLDRIKRTIRAGL---------SPR 595 (652)
T ss_pred HHHHHHhCCC---------cceEEEEeeecCCCCEEEEEEEEECCC---CCCCHHHHHHHHHHHHhhC---------CCC
Confidence 9999986421 22333322 211112233467766532 1122222233333333333 122
Q ss_pred CCCeEEEEcC---CChHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHhc
Q 014974 355 ISPLSVSIVK---PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 402 (415)
Q Consensus 355 l~p~~v~~v~---~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 402 (415)
-.|-+|.+|+ ...=.+.++..+.+=.....++.+.-+.|++.++.+.+
T Consensus 596 ~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (652)
T TIGR01217 596 HVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNPGAIDNPELLDLYEE 646 (652)
T ss_pred cCCCEEEECCCCCCCCCccChHHHHHHHHcCCCCCCcccccCHHHHHHHHH
Confidence 3455666653 11112233333322122234677888889999888754
No 50
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=97.89 E-value=0.00058 Score=71.98 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC-
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP- 183 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~- 183 (415)
|..+..|.+...+.+ . -.++++ ++..|| + .....++++.+| ++++ .+||.||+.+.... ...+.
T Consensus 281 p~~~~~l~~~~~~~~-----~-~~~~lr---~~~~gG~~l~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~-~~~~~~ 348 (527)
T TIGR02275 281 PPAVALWMQAASKSR-----Y-DLSSLK---LLQVGGAKFSEAAARRVPAVFG-CQLQ-QVFGMAEGLVNYTR-LDDPAE 348 (527)
T ss_pred HHHHHHHHhCccccC-----C-CccceE---EEEEcCCCCCHHHHHHHHHHhC-CeEE-eeeccCccCccccC-CCCccc
Confidence 666655554443211 1 124666 344444 2 455567777676 8888 99999997543211 00000
Q ss_pred ---CCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCC
Q 014974 184 ---QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGD 243 (415)
Q Consensus 184 ---~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGD 243 (415)
....+.+.++ ...+.++.+ +++ +..|+..||+++.. .|.| -|++||
T Consensus 349 ~~~~~~G~~~~~~-~~v~i~d~~--------g~~-----~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGD 414 (527)
T TIGR02275 349 IIFTTQGRPMSPD-DEVRVVDDH--------GNP-----VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGD 414 (527)
T ss_pred cccccCCCCCCCC-ceEEEECCC--------CCC-----CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCc
Confidence 0011111111 223344321 222 45899999999753 2322 299999
Q ss_pred EEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 244 IVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 244 vV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+.++.. ...+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 415 l~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 453 (527)
T TIGR02275 415 LVRLTP----EGYIVVVGRAKDQINRGGEKIAAEEIENLLLAH 453 (527)
T ss_pred eEEEcC----CccEEEEecccceeecCCEEECHHHHHHHHHhC
Confidence 999853 446889999998 889999999999988743
No 51
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.89 E-value=0.00061 Score=72.21 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCC---CCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~---~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
+++++.| ..+|. .+..+.++++.+| .+++ .+||+||+....-..+.. .+. ......++. -++.++.+
T Consensus 311 ~~~lr~i--~~gG~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~-~vG~p~~~~-~~~i~d~~-- 382 (537)
T PRK13382 311 GRSLRFA--AASGSRMRPDVVIAFMDQFG-DVIY-NNYNATEAGMIATATPADLRAAPD-TAGRPAEGT-EIRILDQD-- 382 (537)
T ss_pred ccceeEE--EEcCCCCCHHHHHHHHHHcC-CcEE-ecccccccCcceecChhHhccCCC-CccccCcCc-EEEEECCC--
Confidence 3567733 33343 2566778888787 5777 999999964322111100 000 111123333 34555532
Q ss_pred cccccCCceeecCCcccCceEEEEecccc---ce----------eeeeeCCEEEEeeecCCCcEEEEEeeCCC---ccee
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF----------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFE 269 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~~---GL----------yRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gE 269 (415)
.+ .+..|+..||++++.+ |. -.|++||+++... .-.+.|+||.++ +.|+
T Consensus 383 ------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~dd~ik~~G~ 447 (537)
T PRK13382 383 ------FR-----EVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDE----NGRLFVVGRDDEMIVSGGE 447 (537)
T ss_pred ------CC-----CCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEeC----CCcEEEeccccceeEECCE
Confidence 22 2458999999998742 11 1589999998864 235889999998 8899
Q ss_pred ecCHHHHHHHHHHH
Q 014974 270 IISERDLMSAMESF 283 (415)
Q Consensus 270 kl~e~~v~~av~~a 283 (415)
+++..+|+.++.+.
T Consensus 448 ~v~~~eIE~~l~~~ 461 (537)
T PRK13382 448 NVYPIEVEKTLATH 461 (537)
T ss_pred EECHHHHHHHHHhC
Confidence 99999999998753
No 52
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=97.89 E-value=0.00043 Score=73.50 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=78.0
Q ss_pred EEecCCh---HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCC---CCCCceeeecCCceEEEeeeCCcccccccCC
Q 014974 139 CVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGE 212 (415)
Q Consensus 139 ~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~---~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~ 212 (415)
.+.+|+. ....+++++.++ ++++ ..||+||+...+...... .+. ......++ .-.+.++.+ +
T Consensus 331 ~~~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~vG~p~~g-~~v~i~d~~--------~ 398 (557)
T PRK07059 331 VANGGGMAVQRPVAERWLEMTG-CPIT-EGYGLSETSPVATCNPVDATEFSG-TIGLPLPS-TEVSIRDDD--------G 398 (557)
T ss_pred EEEeccccCCHHHHHHHHHHhC-CCee-eccccccccchhhcCCCCCCCcCC-cccCccCC-cEEEEECCC--------C
Confidence 4444542 455567777676 8888 899999974432211111 011 11112232 234555432 2
Q ss_pred ceeecCCcccCceEEEEecccc---cee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecC
Q 014974 213 ETVDFSGVEIGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIIS 272 (415)
Q Consensus 213 ~~l~l~ele~G~~YelVvTt~~---GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~ 272 (415)
++ +..|+.+||++++.. |.| -|++||+++... .-.+.|+||.++ +.|+|++
T Consensus 399 ~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~~~i~~~G~~i~ 469 (557)
T PRK07059 399 ND-----LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE----RGYTKIVDRKKDMILVSGFNVY 469 (557)
T ss_pred CC-----CCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcC----CCcEEEecccccceEECCEEEc
Confidence 22 458889999998632 111 288999888753 346899999998 8899999
Q ss_pred HHHHHHHHHHH
Q 014974 273 ERDLMSAMESF 283 (415)
Q Consensus 273 e~~v~~av~~a 283 (415)
+.++++++.+.
T Consensus 470 p~~iE~~l~~~ 480 (557)
T PRK07059 470 PNEIEEVVASH 480 (557)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 53
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.88 E-value=0.0012 Score=68.48 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEE-EeeCCCCCC---CCCceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQP---PQTTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~~~~~~---~~~~~~~l~~~~~ffEFIp~~~ 204 (415)
++.++++ +.+|. .+...+.+++. ++++. ..||+||+.. ......... ...... ..|+. -++.++.+
T Consensus 263 ~~~lr~~--~~gG~~~~~~~~~~~~~~--g~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~- 334 (496)
T PRK06839 263 LQSVRWF--YNGGAPCPEELMREFIDR--GFLFG-QGFGMTETSPTVFMLSEEDARRKVGSIGK-PVLFC-DYELIDEN- 334 (496)
T ss_pred CcccceE--EECCCCCCHHHHHHHHHh--CCeeE-eeccCCCCCcceEecccccccccCCCCcc-cCCCc-eEEEECCC-
Confidence 4566632 33443 25566777664 48887 8999999642 221111110 000111 12222 24455433
Q ss_pred ccccccCCceeecCCcccCceEEEEecccc---cee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~~---GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
+. ++..|+.+||+|++.. |.| .|++||+++... .-.+.|+||.++
T Consensus 335 -------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~ 398 (496)
T PRK06839 335 -------KN-----KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDE----DGFVYIVGRKKEMII 398 (496)
T ss_pred -------cC-----CCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcC----CCcEEEeccccceEE
Confidence 11 2668999999998753 222 189999999854 346789999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~a 283 (415)
..|+|+++.++++++.+.
T Consensus 399 ~~G~~v~p~~iE~~l~~~ 416 (496)
T PRK06839 399 SGGENIYPLEVEQVINKL 416 (496)
T ss_pred ECCEEECHHHHHHHHHhC
Confidence 779999999999998753
No 54
>PRK13383 acyl-CoA synthetase; Provisional
Probab=97.85 E-value=0.0014 Score=68.96 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC--CCceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP--QTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~--~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+|.++.+ +.+|. . ...+.++++.+| .+++ ..||.||+....-..+.... ........|+. -+++++.+
T Consensus 291 ~~~lr~i--~~gG~~l~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~--- 362 (516)
T PRK13383 291 LPQLRVV--MSSGDRLDPTLGQRFMDTYG-DILY-NGYGSTEVGIGALATPADLRDAPETVGKPVAGC-PVRILDRN--- 362 (516)
T ss_pred CCceEEE--EECCCCCCHHHHHHHHHHcC-chhh-hcccccccccceeccccccccCCCcccCCCCCc-EEEEECCC---
Confidence 4677732 33442 2 555677777777 6777 99999997432211111000 00111122322 34555422
Q ss_pred ccccCCceeecCCcccCceEEEEecccccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceee
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTYRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEI 270 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEk 270 (415)
++ .+..|+.+||+++...-.. .|++||+.+... .-.+.|+||.++ +.|++
T Consensus 363 -----~~-----~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~----~G~l~i~GR~~~~i~~~G~~ 428 (516)
T PRK13383 363 -----NR-----PVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDN----AGRLFIVGREDDMIISGGEN 428 (516)
T ss_pred -----CC-----CCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEcC----CccEEEeccccceEEECCEE
Confidence 22 2457889999998653333 356999888754 236789999998 88999
Q ss_pred cCHHHHHHHHHH
Q 014974 271 ISERDLMSAMES 282 (415)
Q Consensus 271 l~e~~v~~av~~ 282 (415)
++..+|++++.+
T Consensus 429 v~~~eiE~~l~~ 440 (516)
T PRK13383 429 VYPRAVENALAA 440 (516)
T ss_pred ECHHHHHHHHHh
Confidence 999999999975
No 55
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.84 E-value=0.00081 Score=72.82 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=48.5
Q ss_pred CcccCceEEEEeccc---ccee-------------------------------eeeeCCEEEEeeecCCCcEEEEEeeCC
Q 014974 219 GVEIGKMYEVVVTTY---RGFY-------------------------------RYRLGDIVKVVDFYNSSPQVEFVMRAP 264 (415)
Q Consensus 219 ele~G~~YelVvTt~---~GLy-------------------------------RYriGDvV~V~gf~~~~P~i~F~gR~~ 264 (415)
++..|+.+||+|... .|.| -||+||+.++.+ =.+.|+||.+
T Consensus 412 ~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~d-----G~l~i~GR~~ 486 (631)
T PRK07769 412 ELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFD-----GELYITGRVK 486 (631)
T ss_pred CCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEEC-----CEEEEEcccc
Confidence 467899999999762 2222 389999998742 3699999999
Q ss_pred C---cceeecCHHHHHHHHHHH
Q 014974 265 K---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 265 ~---l~gEkl~e~~v~~av~~a 283 (415)
+ +.|+++++.+|+.++.+.
T Consensus 487 d~Ik~~G~~V~p~eIE~~l~~~ 508 (631)
T PRK07769 487 DLVIIDGRNHYPQDLEYTAQEA 508 (631)
T ss_pred cEEEECCeeeCHHHHHHHHHhc
Confidence 8 889999999999999864
No 56
>PRK13391 acyl-CoA synthetase; Provisional
Probab=97.83 E-value=0.00095 Score=69.99 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=78.4
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC-C--CCCCceeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-Q--PPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~-~--~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
++++++ +.+|+ . ....+++++.+| .+++ .+||+||+....-.... + .++.... ..++ ..+.++.+
T Consensus 275 ~~l~~~--~~gg~~~~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~g--~~~i~d~~--- 344 (511)
T PRK13391 275 SSLEVA--IHAAAPCPPQVKEQMIDWWG-PIIH-EYYAATEGLGFTACDSEEWLAHPGTVGR-AMFG--DLHILDDD--- 344 (511)
T ss_pred cceeEE--EEccCCCCHHHHHHHHHHcC-Ccee-eeeccccccceEEecCccccccCCCcCC-cccc--eEEEECCC---
Confidence 366633 33443 2 556677888777 6677 99999997432111111 0 0110111 1222 34455422
Q ss_pred ccccCCceeecCCcccCceEEEEeccc--ccee---------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY--RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~--~GLy---------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
++. +..|+.+||++... -|.| -|++||+.+... .-.+.|+||.++ +
T Consensus 345 -----~~~-----~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~----~g~l~~~gR~~~~i~~ 410 (511)
T PRK13391 345 -----GAE-----LPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE----DGYLYLTDRAAFMIIS 410 (511)
T ss_pred -----CCC-----CCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEecCCEEEECC----CccEEEeccCCCEEEe
Confidence 222 45788899999774 2222 377999887643 456899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|+|+++.+|++++.+.
T Consensus 411 ~G~~v~~~eie~~l~~~ 427 (511)
T PRK13391 411 GGVNIYPQEAENLLITH 427 (511)
T ss_pred CCEEECHHHHHHHHHhC
Confidence 99999999999999753
No 57
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.82 E-value=0.0013 Score=70.11 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=79.1
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-EEe-eCCC-CCCCCCceeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGI-NLDI-AQPPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi-~~~~-~~~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+++++ ++.+|. + ...+.++++.++ ++++ .+||+||+. ++. +... ...+.... ...|+.. ++.++.+
T Consensus 333 ~~lr~--~~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~p~~~~~-v~ivd~~--- 403 (562)
T PRK12492 333 SALKL--TNSGGTALVKATAERWEQLTG-CTIV-EGYGLTETSPVASTNPYGELARLGTVG-IPVPGTA-LKVIDDD--- 403 (562)
T ss_pred cceeE--EEeccccCCHHHHHHHHHHhC-Ccee-eccCccccCceeeecCCcccccCCccc-eecCCCE-EEEECCC---
Confidence 46663 333442 2 445566766665 8888 899999963 222 1110 00011111 2233332 3445422
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+.. +..|+.+||+|+.. .|.| .|++||++++.. .-.+.|+||.++ +
T Consensus 404 -----~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~----~G~l~i~GR~~~~i~~ 469 (562)
T PRK12492 404 -----GNE-----LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDP----DGFVRIVDRKKDLIIV 469 (562)
T ss_pred -----CCC-----CCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECC----CCeEEEecccCCeEEE
Confidence 222 45799999999864 2322 399999998864 236899999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|+++++.+|++++.+
T Consensus 470 ~G~~i~~~eIE~~l~~ 485 (562)
T PRK12492 470 SGFNVYPNEIEDVVMA 485 (562)
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999998864
No 58
>PRK13390 acyl-CoA synthetase; Provisional
Probab=97.81 E-value=0.0012 Score=69.03 Aligned_cols=126 Identities=15% Similarity=0.085 Sum_probs=77.4
Q ss_pred CCCceEEEEecCCh---HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC--CCCCceeeecCCceEEEeeeCCcc
Q 014974 132 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 132 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~--~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
++++. +++|+. ....+.+++.++ .+++ ..||.||+. +.....+.. .++.... ..|+ . .+.++.+
T Consensus 270 ~~l~~---v~~~g~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~g-~-~~i~d~~-- 339 (501)
T PRK13390 270 SSLRA---VIHAAAPCPVDVKHAMIDWLG-PIVY-EYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVLG-D-LHICDDD-- 339 (501)
T ss_pred hhhhe---EEEcCCCCCHHHHHHHHHhcC-Ccee-eeecccccCceEEecchhhccCCCCcCC-cccc-e-EEEECCC--
Confidence 46663 344432 444566777666 6777 899999973 222111110 0110111 2223 2 3334321
Q ss_pred cccccCCceeecCCcccCceEEEEeccccceee-------------------eeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYR-------------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~~GLyR-------------------YriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
+++ +..|+.+||+|.+.+-..+ |++||++++.. .=.+.|+||.+.
T Consensus 340 ------~~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~----dg~l~~~gR~~~~ 404 (501)
T PRK13390 340 ------GNE-----LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE----DGYLYLADRKSFM 404 (501)
T ss_pred ------CCC-----CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC----CCeEEEeeccccc
Confidence 222 4589999999987543333 48999998865 236899999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~ 282 (415)
+.|+++++.+|++++.+
T Consensus 405 i~~~G~~v~p~eIE~~l~~ 423 (501)
T PRK13390 405 IISGGVNIYPQETENALTM 423 (501)
T ss_pred eeECCeeeCHHHHHHHHHh
Confidence 88999999999999864
No 59
>PRK08315 AMP-binding domain protein; Validated
Probab=97.80 E-value=0.001 Score=70.45 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=82.1
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC----CCceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP----QTTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~----~~~~~~l~~~~~ffEFIp~~~ 204 (415)
.|+++.+ +.+|+ + ..-+.++++.++..+++ ..||.||+....-.....++ ........|+. -++.++.++
T Consensus 314 ~~~lr~~--~~~G~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~~ 389 (559)
T PRK08315 314 LSSLRTG--IMAGSPCPIEVMKRVIDKMHMSEVT-IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHL-EVKIVDPET 389 (559)
T ss_pred chhhhee--EecCCCCCHHHHHHHHHHcCCccee-EEEcccccccceeecCcccchhhccCCCCccCCCc-EEEEEcCcc
Confidence 3677733 34443 2 45567777778766677 89999997432211110000 00111223433 355555432
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC--
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 265 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~-- 265 (415)
++. +..|+.+||+|... .|.| .|++||+++... .=.+.|+||.++
T Consensus 390 -------~~~-----~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~d~~i 453 (559)
T PRK08315 390 -------GET-----VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE----EGYVNIVGRIKDMI 453 (559)
T ss_pred -------CCc-----CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC----CceEEEEeeccceE
Confidence 222 45889999999764 2222 499999988753 236889999997
Q ss_pred -cceeecCHHHHHHHHHHH
Q 014974 266 -SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 -l~gEkl~e~~v~~av~~a 283 (415)
+.|++++..+|++++.+.
T Consensus 454 ~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 454 IRGGENIYPREIEEFLYTH 472 (559)
T ss_pred EECCEEEcHHHHHHHHHhC
Confidence 889999999999988753
No 60
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=97.79 E-value=0.0015 Score=68.31 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCc-eeeecCCceEEEeeeCCcccccc
Q 014974 133 NVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDMEKNEA 209 (415)
Q Consensus 133 ~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~-~~~l~~~~~ffEFIp~~~~~~~~ 209 (415)
+++. ++.+|. . +...+.+++.+| ++++ ..||+||...........+...+ .....++. -++.++ ++
T Consensus 279 ~l~~--~~~~G~~l~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~-~v~i~d-~~----- 347 (508)
T TIGR02262 279 RLRL--CTSAGEALPAEVGQRWQARFG-VDIV-DGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY-RLRLVG-DG----- 347 (508)
T ss_pred ccee--EEEcCCCCCHHHHHHHHHHhC-Cchh-hCccccccCceeecCCccCCCCCCcCCCCCCc-EEEEEC-CC-----
Confidence 5663 344443 2 445567777776 7888 89999996321111111110000 01122332 256665 22
Q ss_pred cCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceee
Q 014974 210 VGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEI 270 (415)
Q Consensus 210 ~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEk 270 (415)
+.+ +..|+.+||++|.. .|.| .|++||+.+... .-.+.|+||.++ +.|++
T Consensus 348 --~~~-----~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~gR~~d~i~~~G~~ 416 (508)
T TIGR02262 348 --GQD-----VAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRND----DGSYTYAGRTDDMLKVSGIY 416 (508)
T ss_pred --CCC-----CCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcC----CccEEEeccccceeeeCCEE
Confidence 223 45889999999875 2322 479999877643 336899999998 88999
Q ss_pred cCHHHHHHHHHHH
Q 014974 271 ISERDLMSAMESF 283 (415)
Q Consensus 271 l~e~~v~~av~~a 283 (415)
++..+|++++.+.
T Consensus 417 v~~~~ie~~l~~~ 429 (508)
T TIGR02262 417 VSPFEIESALIQH 429 (508)
T ss_pred ECHHHHHHHHHhC
Confidence 9999999998753
No 61
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.78 E-value=0.00024 Score=73.95 Aligned_cols=125 Identities=17% Similarity=0.075 Sum_probs=82.8
Q ss_pred EEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCC---CCCceeeecCCceEEEeeeCCcccccccCCc
Q 014974 139 CVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP---PQTTRFVMLPTAAYFEFLPFDMEKNEAVGEE 213 (415)
Q Consensus 139 ~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~---~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~ 213 (415)
.+.+|+ ...-..++++.+|+++++ ..||+||+.......+... +... ....|+ ..++.++.+ +.
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~-G~~~~~-~~~~i~d~~--------g~ 326 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSV-GRPFHN-VQVRICNEA--------GE 326 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCC-CcccCC-cEEEEECCC--------CC
Confidence 455564 255567888888889998 8999999743222221110 1011 112333 345666532 22
Q ss_pred eeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHH
Q 014974 214 TVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISER 274 (415)
Q Consensus 214 ~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~ 274 (415)
.++.|+.+||+|++. .|.| .|++||+.++.. .-.+.|+||.++ +.|++++..
T Consensus 327 -----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~----~g~l~i~GR~~d~i~~~G~~v~~~ 397 (487)
T PRK07638 327 -----EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDE----EGFIYIVGREKNMILFGGINIFPE 397 (487)
T ss_pred -----CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcC----CCeEEEEecCCCeEEeCCEEECHH
Confidence 356899999999874 2322 478999887653 457899999998 889999999
Q ss_pred HHHHHHHHH
Q 014974 275 DLMSAMESF 283 (415)
Q Consensus 275 ~v~~av~~a 283 (415)
+|++++.+.
T Consensus 398 eiE~~l~~~ 406 (487)
T PRK07638 398 EIESVLHEH 406 (487)
T ss_pred HHHHHHHhC
Confidence 999998753
No 62
>PLN02246 4-coumarate--CoA ligase
Probab=97.77 E-value=0.0013 Score=69.52 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEE--EeeCCCCC-----CCCCceeeecCCceEEEeeeC
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQ-----PPQTTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i--gi~~~~~~-----~~~~~~~~l~~~~~ffEFIp~ 202 (415)
+.++.+ +.+|. . ......+++.+++.++. .+||+||+.. +.+..... .++.. ....++. -.+.+++
T Consensus 298 ~~lr~~--~~gg~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~-~~~i~d~ 372 (537)
T PLN02246 298 SSIRMV--LSGAAPLGKELEDAFRAKLPNAVLG-QGYGMTEAGPVLAMCLAFAKEPFPVKSGSC-GTVVRNA-ELKIVDP 372 (537)
T ss_pred cceeEE--EEecCcCCHHHHHHHHHHcCCCeEe-ccccccccCcccccccccCCCCccccCCcc-ccccCCc-EEEEecC
Confidence 466633 23332 2 55567788888878787 8999999742 22111000 00011 1122222 2344443
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 265 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~ 265 (415)
+. . ..+..|+.+||+++.. .|.| .|++||+.++.. .-.+.|+||.++
T Consensus 373 ~~-------~-----~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~dd 436 (537)
T PLN02246 373 ET-------G-----ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDD----DDELFIVDRLKE 436 (537)
T ss_pred CC-------C-----CcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeC----CCeEEEEecccc
Confidence 22 1 2356899999999853 2322 378999998764 226889999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 014974 266 ---SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 ---l~gEkl~e~~v~~av~~ 282 (415)
+.|++++..+|++++.+
T Consensus 437 ~i~~~G~~i~~~eIE~~l~~ 456 (537)
T PLN02246 437 LIKYKGFQVAPAELEALLIS 456 (537)
T ss_pred eEEECCEEECcHHHHHHHHh
Confidence 88999999999998875
No 63
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.77 E-value=0.00077 Score=78.82 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCC--------CceeeecCCceEEEeee
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ--------TTRFVMLPTAAYFEFLP 201 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~--------~~~~~l~~~~~ffEFIp 201 (415)
++++.| +.+|. . ....+++++.++ ++++ ..||.||+.+.....+.++.. .......++..+ ..++
T Consensus 717 ~~lr~i--~~gGe~l~~~~~~~~~~~~~-~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~-~i~d 791 (1296)
T PRK10252 717 ASLRQV--FCSGEALPADLCREWQQLTG-APLH-NLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGL-RILD 791 (1296)
T ss_pred CCccEE--EEecCCCCHHHHHHHHhcCC-CEEE-eCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEE-EEEC
Confidence 577733 34443 2 455566766554 8888 999999975433222111100 001112233322 2232
Q ss_pred CCcccccccCCceeecCCcccCceEEEEeccc---ccee--------------------eeeeCCEEEEeeecCCCcEEE
Q 014974 202 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------------RYRLGDIVKVVDFYNSSPQVE 258 (415)
Q Consensus 202 ~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------------RYriGDvV~V~gf~~~~P~i~ 258 (415)
.+ .+. +..|+.+||+|+.. .|.| -||+||++++.. .-.+.
T Consensus 792 ~~--------~~~-----~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~----~G~l~ 854 (1296)
T PRK10252 792 AR--------MRP-----VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLD----DGAVE 854 (1296)
T ss_pred CC--------CCC-----CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcC----CCcEE
Confidence 11 222 45899999999874 2321 299999998864 24689
Q ss_pred EEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 259 FVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 259 F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
|+||.+. ++|+++...+|+.++.+.
T Consensus 855 ~~GR~d~~ik~~G~ri~~~eIE~~l~~~ 882 (1296)
T PRK10252 855 YLGRSDDQLKIRGQRIELGEIDRAMQAL 882 (1296)
T ss_pred EecccCCeEEEeeEEecHHHHHHHHHhC
Confidence 9999997 999999999999999864
No 64
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=97.75 E-value=0.0009 Score=71.02 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCC-C-CCceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP-P-QTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~-~-~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+++++. ++.+|. + .....++++.++ ++++ ..||+||+...+...+... . ........++. -...++.+
T Consensus 328 l~~lr~--v~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~~--- 399 (560)
T PRK08751 328 FSSLKM--TLGGGMAVQRSVAERWKQVTG-LTLV-EAYGLTETSPAACINPLTLKEYNGSIGLPIPST-DACIKDDA--- 399 (560)
T ss_pred hhhhee--eeeCCCCCCHHHHHHHHHHhC-CeEE-EeeccccCCCceecccccccccCCCcCccCCCc-eEEEECCC---
Confidence 456773 344443 2 444567777676 7887 8999999743332211100 0 00112222322 23333311
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. .+..|+.+||++++. .|.|. |++||+++++. .-.+.|+||.++ +
T Consensus 400 -----~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~i~GR~~d~i~~ 465 (560)
T PRK08751 400 -----GT-----VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDE----QGFVYIVDRKKDMILV 465 (560)
T ss_pred -----CC-----CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcC----CceEEEEeechhheeE
Confidence 22 255788999999875 22221 89999998753 347899999997 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMESF 283 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a 283 (415)
.|++++..+|++++.+.
T Consensus 466 ~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 466 SGFNVYPNEIEDVIAMM 482 (560)
T ss_pred CCEEEcHHHHHHHHHhC
Confidence 89999999999999754
No 65
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.75 E-value=0.00036 Score=80.30 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceE--EEeeCCCC----------CCCCCceeeecCCce
Q 014974 131 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECY--VGINLDIA----------QPPQTTRFVMLPTAA 195 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~--igi~~~~~----------~~~~~~~~~l~~~~~ 195 (415)
.|+++ .+.+|+ . +...+++++.+| ++++ ..||+||+. +..+.... +.+. ......|+.
T Consensus 897 ~~~lr---~~~~gg~~~~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~p~~~~- 969 (1146)
T PRK08633 897 FASLR---LVVAGAEKLKPEVADAFEEKFG-IRIL-EGYGATETSPVASVNLPDVLAADFKRQTGSKEG-SVGMPLPGV- 969 (1146)
T ss_pred CCCee---eEEEcCCcCCHHHHHHHHHHhC-CCee-cccccccCcceEEEecCcccccccccccCCCCC-CccccCCCC-
Confidence 46777 334443 2 556677777776 8888 999999953 33322110 0010 111223332
Q ss_pred EEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee-----------------eeeeCCEEEEeeecCCCc
Q 014974 196 YFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSP 255 (415)
Q Consensus 196 ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-----------------RYriGDvV~V~gf~~~~P 255 (415)
-.+.+++++ + .++..|+.+||+++.. .|.| .|++||+.++.. .-
T Consensus 970 ~v~i~d~~~-------~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~----~g 1033 (1146)
T PRK08633 970 AVRIVDPET-------F-----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDE----DG 1033 (1146)
T ss_pred EEEEEcCCC-------C-----ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcC----Cc
Confidence 344554332 2 2356899999999764 2222 489999999864 34
Q ss_pred EEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 256 QVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 256 ~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.+.|+||.++ +.|++++..+|++++.+.
T Consensus 1034 ~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 1064 (1146)
T PRK08633 1034 FLTITDRYSRFAKIGGEMVPLGAVEEELAKA 1064 (1146)
T ss_pred eEEEEecccchhhhCcEEECHHHHHHHHHhc
Confidence 6899999998 889999999999999864
No 66
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.74 E-value=0.0012 Score=70.05 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccc-----cccCCceeecCCc
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN-----EAVGEETVDFSGV 220 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~-----~~~~~~~l~l~el 220 (415)
.....++.+.++ .+++ ..||.||+...+-..+..+++...+ ..|+ .++++.+..+. -.+++..+ .
T Consensus 277 ~~~~~~~~~~~~-~~l~-~~YG~tE~~~~~~~~~~~~~~~vG~-p~~g---~~i~~~~~~~~~~~~~~d~~g~~~----~ 346 (540)
T PRK13388 277 PRDIAEFSRRFG-CQVE-DGYGSSEGAVIVVREPGTPPGSIGR-GAPG---VAIYNPETLTECAVARFDAHGALL----N 346 (540)
T ss_pred HHHHHHHHHHhC-Ccee-cccccccccceeecCCCCCCCCCCC-CCCC---cEEEcCCCCccccceeccCccccc----c
Confidence 455566766675 7888 9999999744332222222222223 2344 34444322100 00111111 1
Q ss_pred ccCceEEEEec-cc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHH
Q 014974 221 EIGKMYEVVVT-TY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 280 (415)
Q Consensus 221 e~G~~YelVvT-t~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av 280 (415)
..|+.+||+++ .. .|.| .|++||+.+... .-.+.|+||.++ +.|+|++..+|++++
T Consensus 347 ~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~----dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l 422 (540)
T PRK13388 347 ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDA----DGWIYFAGRTADWMRVDGENLSAAPIERIL 422 (540)
T ss_pred CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcC----CCcEEEeccCCceEEECCEEeCHHHHHHHH
Confidence 24678999998 32 2444 499999988864 236889999998 889999999999988
Q ss_pred HH
Q 014974 281 ES 282 (415)
Q Consensus 281 ~~ 282 (415)
.+
T Consensus 423 ~~ 424 (540)
T PRK13388 423 LR 424 (540)
T ss_pred Hh
Confidence 75
No 67
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=97.73 E-value=0.0015 Score=68.95 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=48.1
Q ss_pred cccCceEEEEeccc---ccee---------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 220 VEIGKMYEVVVTTY---RGFY---------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 220 le~G~~YelVvTt~---~GLy---------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+..|+.+||+|+.. .|.| -|++||+.+.. ++ .+.|+||.++ +.|++++..+|++++.+.
T Consensus 367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~---~G--~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV---DG--GLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE---CC--EEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 66899999999764 3433 38999999763 12 5899999998 889999999999999864
No 68
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.72 E-value=0.0021 Score=67.08 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC--CCceeeecCCceEEEeeeCCcccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP--QTTRFVMLPTAAYFEFLPFDMEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~--~~~~~~l~~~~~ffEFIp~~~~~~ 207 (415)
++++ .++.+|. + +....++++.+++++++ ..||.||+.......+.... ........|+. ....++.+
T Consensus 274 ~~l~--~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~~~~---- 345 (515)
T TIGR03098 274 PSLR--YLTNSGGAMPRATLSRLRSFLPNARLF-LMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNA-EVLVLRED---- 345 (515)
T ss_pred cceE--EEEecCCcCCHHHHHHHHHHCCCCeEe-eeeccccccceEecccccccCCCCCcceecCCC-EEEEECCC----
Confidence 4666 3334443 2 56667888888778888 99999997432222211100 00112233332 34444422
Q ss_pred cccCCceeecCCcccCceEEEEeccc---ccee-------------------------eeeeCCEEEEeeecCCCcEEEE
Q 014974 208 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------------------RYRLGDIVKVVDFYNSSPQVEF 259 (415)
Q Consensus 208 ~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------------------RYriGDvV~V~gf~~~~P~i~F 259 (415)
++. +..|+.+||++.+. .|.| .|++||++++.. .=.+.|
T Consensus 346 ----~~~-----~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~ 412 (515)
T TIGR03098 346 ----GSE-----CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDE----EGFLYF 412 (515)
T ss_pred ----CCC-----CCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcC----CceEEE
Confidence 222 34688889988663 2322 378999888743 236789
Q ss_pred EeeCCC---cceeecCHHHHHHHHHH
Q 014974 260 VMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 260 ~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
.||.++ +.|++++..+|++++.+
T Consensus 413 ~GR~~d~i~~~G~~v~~~eiE~~l~~ 438 (515)
T TIGR03098 413 VGRRDEMIKTSGYRVSPTEVEEVAYA 438 (515)
T ss_pred EeccccceecCCEEeCHHHHHHHHhc
Confidence 999997 78999999999999874
No 69
>PLN03051 acyl-activating enzyme; Provisional
Probab=97.72 E-value=0.0023 Score=67.31 Aligned_cols=41 Identities=22% Similarity=0.066 Sum_probs=35.5
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
.|++||++++.. .-.+.|+||.++ +.|++++..+|++++.+
T Consensus 358 ~~~TGDlg~~d~----dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 358 LRRHGDIMKRTP----GGYFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred eeecCCeEEECC----CCcEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 489999998853 236899999998 88999999999999985
No 70
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.70 E-value=0.00092 Score=76.74 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCceEEEEecCCh-HHHHHHHHHhhCCCCccccccccCceEEEe-eCCCCCCCCCceeeecCCceEEEeeeCC--cccc
Q 014974 132 PNVRYIKCVTTGSM-SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQPPQTTRFVMLPTAAYFEFLPFD--MEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi-~~~~~~~~~~~~~~l~~~~~ffEFIp~~--~~~~ 207 (415)
+.++++ .+|++ .....++++.+|+++++ .+||.||+.+.+ +.. ...++.. -...|+..-++..+.+ ..+-
T Consensus 720 ~slr~~---~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~-~~~~~sv-G~p~pg~~~v~i~~~d~~~g~l 793 (994)
T PRK07868 720 HPVRLF---IGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQAVLANVS-GAKIGSK-GRPLPGAGRVELAAYDPEHDLI 793 (994)
T ss_pred CceEEE---ecCCCCHHHHHHHHHHhCchhee-eeeecccccccccccC-CCCCccc-CCccCCCCceeEEEecCcCCce
Confidence 456633 35555 55667888888888888 899999985432 111 1111111 1233443223332211 1000
Q ss_pred -cccCCceeecCCcccCceEEEEeccc----------ccee-----eeeeCCEEEEeeecCCCcEEEEEeeCCC---cce
Q 014974 208 -EAVGEETVDFSGVEIGKMYEVVVTTY----------RGFY-----RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 268 (415)
Q Consensus 208 -~~~~~~~l~l~ele~G~~YelVvTt~----------~GLy-----RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~g 268 (415)
..+++ -..+++.|+.+||.+... .|.+ -|++||+.++.- -=.+.|+||.++ +.|
T Consensus 794 i~d~~G---~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~G 866 (994)
T PRK07868 794 LEDDRG---FVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRDD----DGDYWLVDRRGSVIRTAR 866 (994)
T ss_pred eecCCc---eEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEcC----CCCEEEeccCCCEEEeCC
Confidence 00011 012367899999998642 2223 278999998753 345899999998 558
Q ss_pred eecCHHHHHHHHHHH
Q 014974 269 EIISERDLMSAMESF 283 (415)
Q Consensus 269 Ekl~e~~v~~av~~a 283 (415)
++++..+|++++.+.
T Consensus 867 ~~I~p~EIE~~L~~h 881 (994)
T PRK07868 867 GPVYTEPVTDALGRI 881 (994)
T ss_pred ceEcHHHHHHHHhcC
Confidence 999999999998853
No 71
>PRK07798 acyl-CoA synthetase; Validated
Probab=97.69 E-value=0.0016 Score=68.05 Aligned_cols=130 Identities=14% Similarity=0.055 Sum_probs=77.8
Q ss_pred CCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCce-EEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccc
Q 014974 132 PNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg-~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~ 207 (415)
++++ .+.+|| + .....++++.+++++++ ..||+||. .++......++...+.....++. -.+.++.+
T Consensus 296 ~~l~---~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~---- 366 (533)
T PRK07798 296 SSLF---AIASGGALFSPSVKEALLELLPNVVLT-DSIGSSETGFGGSGTVAKGAVHTGGPRFTIGP-RTVVLDED---- 366 (533)
T ss_pred CceE---EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccccccCCCCCCccCCCCccCCCc-eEEEECCC----
Confidence 4565 344443 2 55667777778778888 99999995 33332212221111111122332 24444432
Q ss_pred cccCCceeecCCcccCce--EEEEeccc-------------------cceeeeeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 208 EAVGEETVDFSGVEIGKM--YEVVVTTY-------------------RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 208 ~~~~~~~l~l~ele~G~~--YelVvTt~-------------------~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
+++ +..|+. .+++.+.. .|-.-|++||++++.. .-.+.|+||.++
T Consensus 367 ----~~~-----~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~~~ 433 (533)
T PRK07798 367 ----GNP-----VEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA----DGTITLLGRGSVC 433 (533)
T ss_pred ----CCC-----CCCCCCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC----CCcEEEEccccce
Confidence 222 335555 66665542 1222478999988753 236899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~a 283 (415)
+.|++++..+|++++.+.
T Consensus 434 i~~~G~~v~~~eIE~~l~~~ 453 (533)
T PRK07798 434 INTGGEKVFPEEVEEALKAH 453 (533)
T ss_pred EecCCEEeCHHHHHHHHHhC
Confidence 889999999999988753
No 72
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.69 E-value=0.00019 Score=76.34 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEE-EeeC--CCCCCCCCceeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV-GINL--DIAQPPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~--~~~~~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+.+++| +.+|. . .....++++.++ ++++ ..||+||+.. +... .....++ ......++.. .+.++.++
T Consensus 323 ~~lr~v--~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~-~~i~~~~~-- 394 (563)
T PRK06710 323 SSIRAC--ISGSAPLPVEVQEKFETVTG-GKLV-EGYGLTESSPVTHSNFLWEKRVPG-SIGVPWPDTE-AMIMSLET-- 394 (563)
T ss_pred hhhhhe--eeCCCcCCHHHHHHHHHhhC-CCEe-cccccccCccccccCcccccccCC-ccCCCCCCCe-EEEEECCC--
Confidence 566632 33332 2 455567777675 7888 8999999643 2110 0011111 1122334443 44555332
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---cceee-------------eeeCCEEEEeeecCCCcEEEEEeeCCC---cc
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 267 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~ 267 (415)
++. +..|+.+||+++.. .|.|. |++||+++.+. .-.+.|+||.++ +.
T Consensus 395 -----~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~~~~~GR~dd~i~~~ 460 (563)
T PRK06710 395 -----GEA-----LPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDE----DGFFYVKDRKKDMIVAS 460 (563)
T ss_pred -----Ccc-----CCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcC----CCcEEEeeccccEEEEC
Confidence 222 56899999999875 33333 99999987653 347899999988 88
Q ss_pred eeecCHHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMESF 283 (415)
Q Consensus 268 gEkl~e~~v~~av~~a 283 (415)
|+|+++.+|++++.+.
T Consensus 461 G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 461 GFNVYPREVEEVLYEH 476 (563)
T ss_pred CEEECHHHHHHHHHhC
Confidence 9999999999999754
No 73
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=97.69 E-value=0.00033 Score=74.73 Aligned_cols=141 Identities=12% Similarity=0.175 Sum_probs=79.0
Q ss_pred CCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcc--
Q 014974 131 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDME-- 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~-- 205 (415)
.++++ .+.+|| + ....+++++.+++++++ ..||+||+...+......++.... +......|......
T Consensus 287 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 358 (563)
T PLN02860 287 FPSVR---KILNGGGSLSSRLLPDAKKLFPNAKLF-SAYGMTEACSSLTFMTLHDPTLES----PKQTLQTVNQTKSSSV 358 (563)
T ss_pred cccee---EEEeCCCcCCHHHHHHHHHhcCCCcee-cCCCccccCccccccccccccccc----chhhhhhhcccccccc
Confidence 45666 444443 2 55567788888889999 999999964322111110000000 00001111111000
Q ss_pred c--ccccCCceee-----cCCcccCceEEEEecccc---cee--------------eeeeCCEEEEeeecCCCcEEEEEe
Q 014974 206 K--NEAVGEETVD-----FSGVEIGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 206 ~--~~~~~~~~l~-----l~ele~G~~YelVvTt~~---GLy--------------RYriGDvV~V~gf~~~~P~i~F~g 261 (415)
. ....-+.+++ +.+-+.|+.+||++...+ |.| -|++||+.++.. .=.+.|+|
T Consensus 359 ~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~----dG~l~~~G 434 (563)
T PLN02860 359 HQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDK----AGNLWLIG 434 (563)
T ss_pred cccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcC----CCCEEEee
Confidence 0 0000012211 111226889999997753 332 379999998853 33688999
Q ss_pred eCCC---cceeecCHHHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~a 283 (415)
|.++ +.|+++++.+|++++.+.
T Consensus 435 R~~d~i~~~G~~v~p~eIE~~l~~~ 459 (563)
T PLN02860 435 RSNDRIKTGGENVYPEEVEAVLSQH 459 (563)
T ss_pred cccceeEECCEEccHHHHHHHHHhC
Confidence 9998 889999999999998753
No 74
>PRK07470 acyl-CoA synthetase; Validated
Probab=97.68 E-value=0.002 Score=67.73 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=79.4
Q ss_pred cCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEE--EeeCCC--CCC--CCC---ceeeecCCceEEE
Q 014974 130 LWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDI--AQP--PQT---TRFVMLPTAAYFE 198 (415)
Q Consensus 130 lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i--gi~~~~--~~~--~~~---~~~~l~~~~~ffE 198 (415)
..++++++ +.+|+ + .....++++.+| .+++ ..||+||+.. .+.... ..+ +.. ..-...++. -++
T Consensus 278 ~~~~lr~~--~~gG~~l~~~~~~~~~~~~g-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~ 352 (528)
T PRK07470 278 DHSSLRYV--IYAGAPMYRADQKRALAKLG-KVLV-QYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGM-EVQ 352 (528)
T ss_pred CCcceEEE--EEcCCCCCHHHHHHHHHHhC-cHHH-HhCCCcccCCceeecchhhccccccccceeeccCcccCCc-EEE
Confidence 34677733 33443 2 455566666676 6777 8999999632 221100 000 000 000112222 234
Q ss_pred eeeCCcccccccCCceeecCCcccCceEEEEeccc---cceee-------------eeeCCEEEEeeecCCCcEEEEEee
Q 014974 199 FLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMR 262 (415)
Q Consensus 199 FIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR 262 (415)
.++.+ + ..+..|+.+||+++.. .|.|. |++||+.++.. ...+.+.||
T Consensus 353 i~d~~--------~-----~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR 415 (528)
T PRK07470 353 IQDDE--------G-----RELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDA----RGFLYITGR 415 (528)
T ss_pred EECCC--------C-----CCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEcc----CCeEEEeCC
Confidence 44421 2 2356899999999764 33332 89999988753 457999999
Q ss_pred CCC---cceeecCHHHHHHHHHH
Q 014974 263 APK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 263 ~~~---l~gEkl~e~~v~~av~~ 282 (415)
.++ +.|++++..+|+.++.+
T Consensus 416 ~dd~i~~~G~~v~~~~IE~~l~~ 438 (528)
T PRK07470 416 ASDMYISGGSNVYPREIEEKLLT 438 (528)
T ss_pred ccceEEeCCEEECHHHHHHHHHh
Confidence 998 88999999999999974
No 75
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=97.67 E-value=0.0016 Score=70.26 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=49.4
Q ss_pred CcccCceEEEEeccc---ccee--------------------------------eeeeCCEEEEeeecCCCcEEEEEeeC
Q 014974 219 GVEIGKMYEVVVTTY---RGFY--------------------------------RYRLGDIVKVVDFYNSSPQVEFVMRA 263 (415)
Q Consensus 219 ele~G~~YelVvTt~---~GLy--------------------------------RYriGDvV~V~gf~~~~P~i~F~gR~ 263 (415)
++.+|+.+||.+... .|.| -|++||+.++. + =.+.|+||.
T Consensus 423 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~---d--G~l~i~GR~ 497 (612)
T PRK12476 423 ELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL---D--GELYITGRI 497 (612)
T ss_pred CCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE---C--CEEEEEecc
Confidence 466899999999763 3333 58999999753 2 259999999
Q ss_pred CC---cceeecCHHHHHHHHHHHHH
Q 014974 264 PK---SSFEIISERDLMSAMESFQM 285 (415)
Q Consensus 264 ~~---l~gEkl~e~~v~~av~~a~~ 285 (415)
++ +.|++++..+|++++.+..+
T Consensus 498 ~d~I~~~G~~I~p~eIE~~l~~~~p 522 (612)
T PRK12476 498 ADLIVIDGRNHYPQDIEATVAEASP 522 (612)
T ss_pred CcEEEECCcccCHHHHHHHHHHhcc
Confidence 98 89999999999999986533
No 76
>PRK12467 peptide synthase; Provisional
Probab=97.67 E-value=0.00045 Score=89.24 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=82.8
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC---C---CceeeecCCceEEEeeeC
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---Q---TTRFVMLPTAAYFEFLPF 202 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~---~---~~~~~l~~~~~ffEFIp~ 202 (415)
.|.|+. ++.+|. + ..-+.++++.++++.++ .+||.||+.+.......... + .......++...+ .++
T Consensus 3350 ~~~lr~--~~~gGe~~~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-v~d- 3424 (3956)
T PRK12467 3350 CASLDI--YVFGGEAVPPAAFEQVKRKLKPRGLT-NGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIY-VLD- 3424 (3956)
T ss_pred CCCceE--EEEecCCCCHHHHHHHHHhCCCCEEE-eCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEE-EEC-
Confidence 356773 334443 2 45556777777878888 99999998654322111000 0 0011122332211 111
Q ss_pred CcccccccCCceeecCCcccCceEEEEeccc---cceee---------------------eeeCCEEEEeeecCCCcEEE
Q 014974 203 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR---------------------YRLGDIVKVVDFYNSSPQVE 258 (415)
Q Consensus 203 ~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR---------------------YriGDvV~V~gf~~~~P~i~ 258 (415)
+ +.++ +.+|+.+||.|... .|.|. |||||++++.. .-.|+
T Consensus 3425 -~------~~~~-----vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l~ 3488 (3956)
T PRK12467 3425 -G------QLNP-----VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA----DGVIE 3488 (3956)
T ss_pred -C------CCCC-----CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC----CCcEE
Confidence 1 1233 45899999999763 33321 99999998864 34799
Q ss_pred EEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 259 FVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 259 F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
|+||.++ ++|.++...+|+.++.+.
T Consensus 3489 ~~GR~d~~iki~G~rIe~~EIE~~l~~~ 3516 (3956)
T PRK12467 3489 YLGRIDHQVKIRGFRIELGEIEARLLQH 3516 (3956)
T ss_pred EeccccceEeeceEeecHHHHHHHHhhC
Confidence 9999998 999999999999998763
No 77
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.64 E-value=0.0023 Score=66.74 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=78.2
Q ss_pred CCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEE-E-eeCCCC-CCCCCceeeecCCceEEEeeeCCc
Q 014974 131 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYV-G-INLDIA-QPPQTTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~i-g-i~~~~~-~~~~~~~~~l~~~~~ffEFIp~~~ 204 (415)
+.+++ ++..|+ + ...++++++.+| .+++ ..||+||+.. . .+.... ..++.....+ ..-++.++.+
T Consensus 261 ~~~lr---~i~~~g~~~~~~~~~~~~~~~~-~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d~~- 331 (502)
T PRK08276 261 VSSLR---VAIHAAAPCPVEVKRAMIDWWG-PIIH-EYYASSEGGGVTVITSEDWLAHPGSVGKAV---LGEVRILDED- 331 (502)
T ss_pred cccce---EEEecCCCCCHHHHHHHHHHhC-cHhh-hhcccccccceeEecCccccccCCCcceec---ccEEEEECCC-
Confidence 34666 444443 2 455577777776 6666 8899999642 2 211100 0010011111 1234444321
Q ss_pred ccccccCCceeecCCcccCceEEEEecccc---ce--------------eeeeeCCEEEEeeecCCCcEEEEEeeCCC--
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 265 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~~---GL--------------yRYriGDvV~V~gf~~~~P~i~F~gR~~~-- 265 (415)
+. .+..|+.+||+++... |. -.|++||++++.. .-.+.++||.++
T Consensus 332 -------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~~~i 395 (502)
T PRK08276 332 -------GN-----ELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE----DGYLYLTDRKSDMI 395 (502)
T ss_pred -------CC-----CCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC----CcCEEEeccCcceE
Confidence 22 3557899999999432 11 1468999988864 236899999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 014974 266 -SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 -l~gEkl~e~~v~~av~~a 283 (415)
+.|++++..+|+.++.+.
T Consensus 396 ~~~G~~v~~~~iE~~i~~~ 414 (502)
T PRK08276 396 ISGGVNIYPQEIENLLVTH 414 (502)
T ss_pred EeCCEEeCHHHHHHHHHhC
Confidence 899999999999999753
No 78
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=97.62 E-value=0.0013 Score=72.39 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCceEEEEecCCh--H-HHHHHHHHhhCCCCccccccccCceEEE--eeCCCCCCCCCceeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGSM--S-QYCSKIKYYAGEVPVLGGDYFASECYVG--INLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~~--~-~y~~~l~~~~g~v~~~~~~y~aSEg~ig--i~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
++++ .+.+||+ + .-...++..+| ++++ .+||.||+..+ ++.......+ ......|+. -...+++++.
T Consensus 420 ~~lr---~i~~GGapl~~~~~~~~~~~~g-~~v~-~~YG~TEt~~~~~~~~~~~~~~g-svG~p~p~~-evkivd~~~~- 491 (696)
T PLN02387 420 GRIR---FMLSGGAPLSGDTQRFINICLG-APIG-QGYGLTETCAGATFSEWDDTSVG-RVGPPLPCC-YVKLVSWEEG- 491 (696)
T ss_pred CcEE---EEEEcCCCCCHHHHHHHHHHcC-CCee-EeechhhcccceeecCcccCCCC-ccCCCCCce-EEEEeecccc-
Confidence 4566 3455543 2 22333444455 8888 99999997433 2211111111 111223333 3555654321
Q ss_pred ccccCCceeecCCcccCceEEEEeccc---ccee------------------eeeeCCEEEEeeecCCCcEEEEEeeCCC
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 265 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy------------------RYriGDvV~V~gf~~~~P~i~F~gR~~~ 265 (415)
+..+. -+++..+||+|... .|.| -|+|||+.++.. .-.+.|+||.++
T Consensus 492 -----~~~~~---~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----dG~l~i~gR~kd 559 (696)
T PLN02387 492 -----GYLIS---DKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----DGCLEIIDRKKD 559 (696)
T ss_pred -----CcccC---CCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECC----CCcEEEEEcccc
Confidence 11111 12334578888653 4443 589999999863 346999999998
Q ss_pred ---cc-eeecCHHHHHHHHHH
Q 014974 266 ---SS-FEIISERDLMSAMES 282 (415)
Q Consensus 266 ---l~-gEkl~e~~v~~av~~ 282 (415)
+. ||++++.+|++++.+
T Consensus 560 ~ik~~~Ge~I~p~eIE~~l~~ 580 (696)
T PLN02387 560 IVKLQHGEYVSLGKVEAALSV 580 (696)
T ss_pred eEECCCCeEEchHHHHHHHhc
Confidence 44 999999999998874
No 79
>PRK07787 acyl-CoA synthetase; Validated
Probab=97.61 E-value=0.0029 Score=65.73 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCC--CCCceeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP--PQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~--~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
+++++ +.+|+ . .....++++.++ .+++ ..||.||+.+.+......+ +. ......++. -..+++.+
T Consensus 241 ~~l~~---~~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~-~vG~~~~g~-~~~i~d~~--- 310 (471)
T PRK07787 241 RGARL---LVSGSAALPVPVFDRLAALTG-HRPV-ERYGMTETLITLSTRADGERRPG-WVGLPLAGV-ETRLVDED--- 310 (471)
T ss_pred cceeE---EEECCCCCCHHHHHHHHHHcC-CCee-cccCccccCcceecCCCCcccCC-cccccCCCc-EEEEECCC---
Confidence 56663 34443 2 455677777776 7888 9999999855331111110 10 111222332 23344322
Q ss_pred ccccCCceeecCCcccCc-eEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeC-CC--
Q 014974 207 NEAVGEETVDFSGVEIGK-MYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRA-PK-- 265 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~-~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~-~~-- 265 (415)
+.++. ..|+ .+||+++.. .|.| -|++||+.++.. .-.+.++||. +.
T Consensus 311 -----~~~~~----~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~----dg~l~~~GR~~d~~i 377 (471)
T PRK07787 311 -----GGPVP----HDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP----DGMHRIVGRESTDLI 377 (471)
T ss_pred -----CCCCC----CCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC----CCCEEEeCCCCceeE
Confidence 22222 1233 689999864 3333 299999888743 3478999996 54
Q ss_pred -cceeecCHHHHHHHHHH
Q 014974 266 -SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 -l~gEkl~e~~v~~av~~ 282 (415)
+.|+|++..+|++++..
T Consensus 378 ~~~G~~v~~~eIE~~l~~ 395 (471)
T PRK07787 378 KSGGYRIGAGEIETALLG 395 (471)
T ss_pred eeCCEEECHHHHHHHHHh
Confidence 88999999999999975
No 80
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=97.58 E-value=0.0014 Score=68.29 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=45.5
Q ss_pred cCceEEEEeccc---cceee--------eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 222 IGKMYEVVVTTY---RGFYR--------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 222 ~G~~YelVvTt~---~GLyR--------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|+.+||+|... .|.|. |++||++++.. --.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 298 ~g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 298 ANQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDA----QGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred CCCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcC----CCCEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 488899998542 33321 89999998742 346889999998 889999999999999853
No 81
>PRK09192 acyl-CoA synthetase; Validated
Probab=97.57 E-value=0.0029 Score=67.71 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=48.0
Q ss_pred cccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHH
Q 014974 220 VEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 280 (415)
Q Consensus 220 le~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av 280 (415)
+..|+..||+++.. .|.| .|++||++.+ . .-.+.|+||.++ +.|+|++..+|++++
T Consensus 406 ~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~-~----~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l 480 (579)
T PRK09192 406 LPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-L----DGYLYITGRAKDLIIINGRNIWPQDIEWIA 480 (579)
T ss_pred CCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeE-E----CCEEEEEeccccEEEECCCccCHHHHHHHH
Confidence 56788999999764 3333 4899999876 2 237999999998 999999999999999
Q ss_pred HHH
Q 014974 281 ESF 283 (415)
Q Consensus 281 ~~a 283 (415)
++.
T Consensus 481 ~~~ 483 (579)
T PRK09192 481 EQE 483 (579)
T ss_pred Hhc
Confidence 874
No 82
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.56 E-value=0.0039 Score=66.10 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=76.8
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEE-E-eeCCCC-----CCCCC-----ceeeecCCceE
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYV-G-INLDIA-----QPPQT-----TRFVMLPTAAY 196 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~i-g-i~~~~~-----~~~~~-----~~~~l~~~~~f 196 (415)
+++++ .++.+|. .+..+.++++.++ ++++ .+||+||+.. + .+..+. .+... ..-...|+ .-
T Consensus 292 ~~~l~--~~~~~G~~l~~~~~~~~~~~~~-~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg-~~ 366 (539)
T PRK07008 292 FSTLR--RTVIGGSACPPAMIRTFEDEYG-VEVI-HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYG-VD 366 (539)
T ss_pred cccce--EEEEcCCCCCHHHHHHHHHHhC-Ccee-cccccccccccceecccccccccCCchhhhhhcccCCccccc-eE
Confidence 46777 3445553 2556677777776 8888 8999999742 2 111000 00000 00001112 12
Q ss_pred EEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee----------eeeeCCEEEEeeecCCCcEEEEEeeC
Q 014974 197 FEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY----------RYRLGDIVKVVDFYNSSPQVEFVMRA 263 (415)
Q Consensus 197 fEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy----------RYriGDvV~V~gf~~~~P~i~F~gR~ 263 (415)
.+.++.+ ...+... .|+..||+++.. .|.| -|++||+.+... .-.+.|+||.
T Consensus 367 ~~i~d~~--------~~~~~~~---~~~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~TGD~~~~~~----dg~l~~~GR~ 431 (539)
T PRK07008 367 MKIVGDD--------GRELPWD---GKAFGDLQVRGPWVIDRYFRGDASPLVDGWFPTGDVATIDA----DGFMQITDRS 431 (539)
T ss_pred EEEECCC--------CCccCCC---CCcceEEEEeCCccchhhcCChhhhhcCCCcccCceEEEcC----CCcEEEeecc
Confidence 3344321 2222211 124578888863 2322 289999998854 2368999999
Q ss_pred CC---cceeecCHHHHHHHHHH
Q 014974 264 PK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 264 ~~---l~gEkl~e~~v~~av~~ 282 (415)
++ +.|+|++..+|++++..
T Consensus 432 ~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 432 KDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred cCEEEeCCeEEcHHHHHHHHHh
Confidence 98 88999999999998875
No 83
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=97.56 E-value=0.00038 Score=70.54 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=75.4
Q ss_pred cCCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCce-EEEeeC--CCC-CCCCCceeeecCCceEEEeeeCC
Q 014974 130 LWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINL--DIA-QPPQTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 130 lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg-~igi~~--~~~-~~~~~~~~~l~~~~~ffEFIp~~ 203 (415)
-++++|.|. .+|+ + +...+++++.++.++++ ..||+||+ .++... ... ..++ ......| ..-++.++.+
T Consensus 275 ~l~~lr~v~--~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~~-~~~~~ivd~~ 349 (417)
T PF00501_consen 275 DLSSLRTVI--SGGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPG-SVGKPLP-GVEVKIVDPN 349 (417)
T ss_dssp TGTT-SEEE--EESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTT-SEBEEST-TEEEEEECTT
T ss_pred ccccccccc--cccccCChhhccccccccccccce-ecccccccceeeecccccccccccc-ccccccc-cccccccccc
Confidence 356788543 3443 3 67778999999877888 99999996 344422 111 0111 1334556 4457888765
Q ss_pred cccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC
Q 014974 204 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 265 (415)
Q Consensus 204 ~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~ 265 (415)
+ ++++ ..|+.+||+|+.. .|.| -|++||++++.. .-.|.|+||.++
T Consensus 350 ~-------~~~~-----~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~----~G~~~~~GR~~~ 412 (417)
T PF00501_consen 350 T-------GEPL-----PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDE----DGYLYILGRSDD 412 (417)
T ss_dssp T-------SSBE-----STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEET----TSEEEEEEEGSC
T ss_pred c-------cccc-----cccccccccccCCccceeeeccccccccccccccceecceEEEECC----CCeEEEEEeeCC
Confidence 3 3343 5999999999954 3433 499999999963 249999999997
No 84
>PLN02614 long-chain acyl-CoA synthetase
Probab=97.56 E-value=0.00031 Score=77.05 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCCceEEEEecCC-hHHHHHHHHHhhCCCCccccccccCceEEE--eeCCCC-CCCCCceeeecCCceEEEeeeCCcccc
Q 014974 132 PNVRYIKCVTTGS-MSQYCSKIKYYAGEVPVLGGDYFASECYVG--INLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~-~~~y~~~l~~~~g~v~~~~~~y~aSEg~ig--i~~~~~-~~~~~~~~~l~~~~~ffEFIp~~~~~~ 207 (415)
++|+++ +.+|+ .+.-..++.+.+++++++ .+||.||+... ++.... ..++. .-...|+.. .-.+++++.
T Consensus 386 ~~lr~~--~~Gga~l~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~gs-vG~p~pg~e-vki~d~~~~-- 458 (666)
T PLN02614 386 GNVRII--LSGAAPLASHVESFLRVVACCHVL-QGYGLTESCAGTFVSLPDELDMLGT-VGPPVPNVD-IRLESVPEM-- 458 (666)
T ss_pred CcEEEE--EEcCCCCCHHHHHHHHHhcCCCEE-eeCchHhhhhheeeeccccCCcCCc-ccCcCCceE-EEEeeeccc--
Confidence 466633 33332 344455666667778888 99999996432 211100 00111 112233332 233432211
Q ss_pred cccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cc-
Q 014974 208 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS- 267 (415)
Q Consensus 208 ~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~- 267 (415)
+.. ++..|+.+||+|... .|.| -|+|||++++.. .=.|.|+||.++ +.
T Consensus 459 ---~~~-----~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~gR~kd~ik~~~ 526 (666)
T PLN02614 459 ---EYD-----ALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP----NGSMKIIDRKKNIFKLSQ 526 (666)
T ss_pred ---Ccc-----cCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcC----CCCEEEEEcchhceecCC
Confidence 112 245789999999653 4554 389999999864 225899999998 33
Q ss_pred eeecCHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMES 282 (415)
Q Consensus 268 gEkl~e~~v~~av~~ 282 (415)
||++++.+|++++.+
T Consensus 527 G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 527 GEYVAVENIENIYGE 541 (666)
T ss_pred CeeecHHHHHHHHhc
Confidence 899999999998874
No 85
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.53 E-value=0.00036 Score=82.34 Aligned_cols=138 Identities=17% Similarity=0.239 Sum_probs=82.0
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecCCceEE----EeeeCCc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF----EFLPFDM 204 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ff----EFIp~~~ 204 (415)
+|.|+. .+.+|. . .....++++.+++++++ .+||.||+.+.+......+. ..+..|+ +++|...
T Consensus 528 ~~~lr~--~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~G~ 597 (1389)
T TIGR03443 528 IPSLHH--AFFVGDILTKRDCLRLQTLAENVCIV-NMYGTTETQRAVSYFEIPSR-------SSDSTFLKNLKDVMPAGK 597 (1389)
T ss_pred CCCccE--EEEecccCCHHHHHHHHHhCCCCEEE-ECccCCccceeEEEEEcccc-------ccccchhhcccCcCcCCC
Confidence 577883 344453 2 45556777778889999 99999997543321100000 0011111 1222211
Q ss_pred ccccccCCceee----cCCcccCceEEEEeccc---ccee----------------------------------------
Q 014974 205 EKNEAVGEETVD----FSGVEIGKMYEVVVTTY---RGFY---------------------------------------- 237 (415)
Q Consensus 205 ~~~~~~~~~~l~----l~ele~G~~YelVvTt~---~GLy---------------------------------------- 237 (415)
.- ....-.+++ ...+.+|+.+||+|... .|.|
T Consensus 598 ~~-~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1389)
T TIGR03443 598 GM-KNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPR 676 (1389)
T ss_pred cc-CCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCc
Confidence 00 000000111 12256899999999652 3322
Q ss_pred --eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 --RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 --RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
-|+|||++++.. .=.+.|+||.++ ++|+++...+|+.++.+.
T Consensus 677 ~~~y~TGDlg~~~~----dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~ 723 (1389)
T TIGR03443 677 DRLYRTGDLGRYLP----DGNVECCGRADDQVKIRGFRIELGEIDTHLSQH 723 (1389)
T ss_pred cceeecCCceeEcC----CCCEEEecccCCEEEeCcEEecHHHHHHHHHhC
Confidence 399999998764 236999999998 999999999999999753
No 86
>PRK06188 acyl-CoA synthetase; Validated
Probab=97.52 E-value=0.0045 Score=65.03 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=78.6
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC-CC----CC--CceeeecCCceEEEeee
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QP----PQ--TTRFVMLPTAAYFEFLP 201 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~-~~----~~--~~~~~l~~~~~ffEFIp 201 (415)
.++++++ +.+|. + .....++.+.+| .++. ..||+||+..++..... .. +. .......|+. -.+.++
T Consensus 280 l~~lr~~--~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~v~i~~ 354 (524)
T PRK06188 280 LSSLETV--YYGASPMSPVRLAEAIERFG-PIFA-QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGL-RVALLD 354 (524)
T ss_pred CcceeEE--EEcCCCCCHHHHHHHHHHhC-chhh-heeCccccCCceeecCchhccccccccCCccccccCCc-EEEEEc
Confidence 3577743 33332 3 344556666666 5565 89999997433321111 00 00 0011122222 244444
Q ss_pred CCcccccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC
Q 014974 202 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 265 (415)
Q Consensus 202 ~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~ 265 (415)
++ + ..+..|+.+||++++. .|.| +|++||+.+... .-.+.|+||.++
T Consensus 355 ~~--------~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~~ 417 (524)
T PRK06188 355 ED--------G-----REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDE----DGFYYIVDRKKD 417 (524)
T ss_pred CC--------C-----CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcC----CccEEEEecccc
Confidence 22 2 2356899999999874 2322 499999888753 347889999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 014974 266 ---SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 ---l~gEkl~e~~v~~av~~ 282 (415)
+.|+++++.+|++++.+
T Consensus 418 ~i~~~G~~i~~~~IE~~l~~ 437 (524)
T PRK06188 418 MIVTGGFNVFPREVEDVLAE 437 (524)
T ss_pred ceecCCEEECHHHHHHHHHh
Confidence 88999999999998864
No 87
>PLN02736 long-chain acyl-CoA synthetase
Probab=97.52 E-value=0.00051 Score=74.82 Aligned_cols=131 Identities=16% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC--CCCCCceeeecCCceEEEeeeCCccccc
Q 014974 133 NVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDMEKNE 208 (415)
Q Consensus 133 ~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~--~~~~~~~~~l~~~~~ffEFIp~~~~~~~ 208 (415)
+++ .++.+|+ + +.....+++.+| ++++ .+||.||+...+..... ..++. .....|+. -..+++.++.
T Consensus 377 ~lr--~~~~gGa~l~~~~~~~~~~~~g-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-vG~p~pg~-~v~i~d~~~~--- 447 (651)
T PLN02736 377 RVR--FMSSGASPLSPDVMEFLRICFG-GRVL-EGYGMTETSCVISGMDEGDNLSGH-VGSPNPAC-EVKLVDVPEM--- 447 (651)
T ss_pred cEE--EEEeCCCCCCHHHHHHHHHHhC-CCeE-EEechHHhchheeccCCCCCCCCc-cCCccCce-EEEEEEcccc---
Confidence 566 2333443 2 455566666676 7888 99999997543321111 11111 11223333 2445553321
Q ss_pred ccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c-c
Q 014974 209 AVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-S 267 (415)
Q Consensus 209 ~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l-~ 267 (415)
. ...+.++++.+||.|... .|.| -|+|||+.++.. .-.+.|+||.++ + .
T Consensus 448 ----~--~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~----dG~l~i~GR~kd~ik~~~ 517 (651)
T PLN02736 448 ----N--YTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQ 517 (651)
T ss_pred ----C--cccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC----CCcEEEEEechhheEcCC
Confidence 0 011233445678888653 3433 388999998864 225899999998 4 4
Q ss_pred eeecCHHHHHHHHHH
Q 014974 268 FEIISERDLMSAMES 282 (415)
Q Consensus 268 gEkl~e~~v~~av~~ 282 (415)
|+++++.+|++++.+
T Consensus 518 G~~V~p~eIE~~l~~ 532 (651)
T PLN02736 518 GEYIAPEKIENVYAK 532 (651)
T ss_pred CcEechHHHHHHHhc
Confidence 999999999998875
No 88
>PRK06178 acyl-CoA synthetase; Validated
Probab=97.52 E-value=0.0034 Score=66.78 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhCCCCccccccccCceEE--EeeCCCCCCCCC------ceeeecCCceEEEeeeCCcccccccCCceeec
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQPPQT------TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDF 217 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~i--gi~~~~~~~~~~------~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l 217 (415)
....+++++.+| ..++...||.||... ++.......+.. ......|+. -++++++++ .+.
T Consensus 341 ~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~v~d~~~-------~~~--- 408 (567)
T PRK06178 341 PDYRQRWRALTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGT-EFKICDFET-------GEL--- 408 (567)
T ss_pred HHHHHHHHHHhC-CcccccccccccccccceeccccccCccccccCCcccccccCCc-EEEEEcCCC-------CCc---
Confidence 566677777787 445536799999632 221110100000 011234443 245665432 223
Q ss_pred CCcccCceEEEEecccc---ce----------e---eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHH
Q 014974 218 SGVEIGKMYEVVVTTYR---GF----------Y---RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMS 278 (415)
Q Consensus 218 ~ele~G~~YelVvTt~~---GL----------y---RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~ 278 (415)
+..|+.+||+++... |. + .|++||+++..+ .-.+.|+||.++ +.|+|++..++++
T Consensus 409 --~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~----~g~l~i~GR~~d~i~~~G~~i~~~eiE~ 482 (567)
T PRK06178 409 --LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDE----QGFLHYLGRRKEMLKVNGMSVFPSEVEA 482 (567)
T ss_pred --CCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEec----CCeEEEEecccccEEECCEEECHHHHHH
Confidence 457888999996632 21 2 499999998854 346899999998 8899999999999
Q ss_pred HHHH
Q 014974 279 AMES 282 (415)
Q Consensus 279 av~~ 282 (415)
++.+
T Consensus 483 ~l~~ 486 (567)
T PRK06178 483 LLGQ 486 (567)
T ss_pred HHHh
Confidence 9875
No 89
>PRK05691 peptide synthase; Validated
Probab=97.51 E-value=0.0017 Score=84.58 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=79.9
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEee---CCCCCCCCC--ceeeecCCceEEEeeeCCc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIAQPPQT--TRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~---~~~~~~~~~--~~~~l~~~~~ffEFIp~~~ 204 (415)
|+|+++ +.+|. + ..-..++.+.++++.++ .+||.||+.+.+. .+....... ......++...| .++ +
T Consensus 3983 ~~lr~~--~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-v~d--~ 4056 (4334)
T PRK05691 3983 DGLRWM--LPTGEAMPPELARQWLQRYPQIGLV-NAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLY-LLD--E 4056 (4334)
T ss_pred CCceEE--EecCCcCCHHHHHHHHHhCCCCeEE-eCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEE-EEC--C
Confidence 577733 44553 2 33345555666779999 9999999876432 111111100 001111222111 111 1
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee---------------------eeeeCCEEEEeeecCCCcEEEEE
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------------RYRLGDIVKVVDFYNSSPQVEFV 260 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy---------------------RYriGDvV~V~gf~~~~P~i~F~ 260 (415)
+.+. +..|..+||+|... .|.| -|||||+++... -=.|+|+
T Consensus 4057 ------~~~~-----~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~~~ 4121 (4334)
T PRK05691 4057 ------ALEL-----VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRS----DGVLEYV 4121 (4334)
T ss_pred ------CCCC-----CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecC----CCcEEEe
Confidence 1222 45899999999763 2322 299999999864 2259999
Q ss_pred eeCCC---cceeecCHHHHHHHHHHH
Q 014974 261 MRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 261 gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
||.++ ++|.++...+|+.++.+.
T Consensus 4122 GR~d~qvki~G~riel~eIE~~l~~~ 4147 (4334)
T PRK05691 4122 GRIDHQVKIRGYRIELGEIEARLHEQ 4147 (4334)
T ss_pred cccCCcEEeceEEecHHHHHHHHHhC
Confidence 99998 999999999999998753
No 90
>PRK08308 acyl-CoA synthetase; Validated
Probab=97.50 E-value=0.0048 Score=63.02 Aligned_cols=56 Identities=14% Similarity=0.005 Sum_probs=46.3
Q ss_pred cCceEEEEeccccceeeeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 222 IGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 222 ~G~~YelVvTt~~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|+..|+++++..| +|++||+++... .-.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 278 ~~~~gel~v~~~~~--~~~TGDl~~~~~----dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~ 336 (414)
T PRK08308 278 ENAPEEIVVKMGDK--EIFTKDLGYKSE----RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRL 336 (414)
T ss_pred CCCCceEEEEcCCc--eEECCceEEECC----CccEEEecccCCeEEECCEEECHHHHHHHHHhC
Confidence 46678999998776 578999998754 236899999998 999999999999998753
No 91
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.47 E-value=0.0011 Score=70.63 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCCh---HHHHHHHHHhhCCCCccccccccCceEE--EeeCCCC-
Q 014974 107 QPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIA- 180 (415)
Q Consensus 107 ~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~i--gi~~~~~- 180 (415)
.|....+|....... -.+.+++++ ++.+|+. +...+++++.++..+++ .+||.||+.. ..+..+.
T Consensus 271 vPt~~~~ll~~~~~~-----~~~~~~~lr---~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~ 341 (534)
T COG0318 271 VPTFLRELLDNPEKD-----DDDLSSSLR---LVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETSPVVTINPPDDL 341 (534)
T ss_pred chHHHHHHHhCCccC-----ccccccceE---EEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccCceeecCCCchh
Confidence 366665554443321 122222355 5566653 67778888889877788 9999999853 3222211
Q ss_pred -CCCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeC
Q 014974 181 -QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLG 242 (415)
Q Consensus 181 -~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriG 242 (415)
...+.. -...|+ .-...++.+. .+. .+|+.+||.|-.. .|-| -|++|
T Consensus 342 ~~~~~~~-G~~~pg-~~v~Ivd~~~-------~~~------~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG 406 (534)
T COG0318 342 LAKPGSV-GRPLPG-VEVRIVDPDG-------GEV------LPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG 406 (534)
T ss_pred hhcCCcc-cccCCC-cEEEEEeCCC-------Ccc------CCCCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec
Confidence 011111 122333 2233333321 112 2288888888532 4433 18999
Q ss_pred CEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 243 DIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 243 DvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
|+.++.. .-.+.|+||.++ ..||++++.+|+.++.+.
T Consensus 407 Dlg~~d~----~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~ 446 (534)
T COG0318 407 DLGYVDE----DGYLYIVGRLKDLIISGGENIYPEEIEAVLAEH 446 (534)
T ss_pred ceEEEcC----CccEEEEeccceEEEeCCeEECHHHHHHHHHhC
Confidence 9986665 256999999888 778999999999999865
No 92
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=97.46 E-value=0.0014 Score=69.50 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCC----CCceeeecCCceEEEeeeCC
Q 014974 131 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP----QTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~----~~~~~~l~~~~~ffEFIp~~ 203 (415)
.+++++ +..|+ + .....++.+.+| ++++ ..||.||+.+..... ..+. .....++.|+. ..+.++.
T Consensus 299 ~~~l~~---v~~gg~~l~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~-~v~i~d~- 370 (536)
T PRK10946 299 LASLKL---LQVGGARLSETLARRIPAELG-CQLQ-QVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDD-EVWVADA- 370 (536)
T ss_pred ccceeE---EEECCCCCCHHHHHHHHHhcC-CeEE-EeecccccceeeecC-CCccccccccCCcccCCCc-eEEEECC-
Confidence 367773 34444 2 444466666666 8888 999999986543211 1100 00111111221 1222221
Q ss_pred cccccccCCceeecCCcccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 204 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 204 ~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
++ ..+..|+..||+++.. .|.| -|++||+.+... .=.+.|+||.++
T Consensus 371 -------~~-----~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~----~G~l~~~gR~~d~ 434 (536)
T PRK10946 371 -------DG-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP----DGYITVVGREKDQ 434 (536)
T ss_pred -------CC-----CCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC----CCcEEEeccccce
Confidence 12 2355899999999763 3332 389999988864 225889999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 014974 266 --SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 --l~gEkl~e~~v~~av~~ 282 (415)
+.|++++..+|+.++.+
T Consensus 435 i~~~G~~v~~~eiE~~l~~ 453 (536)
T PRK10946 435 INRGGEKIAAEEIENLLLR 453 (536)
T ss_pred eecCCEEEcHHHHHHHHHh
Confidence 89999999999999875
No 93
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.46 E-value=0.0046 Score=64.01 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=48.6
Q ss_pred CcccCceEEEEecccc---cee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHH
Q 014974 219 GVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 279 (415)
Q Consensus 219 ele~G~~YelVvTt~~---GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~a 279 (415)
++..|+.+||++++.+ |.+ .|++||+++... ...+.|.||.++ +.|++++..+|+++
T Consensus 326 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~l~~~GR~~~~i~~~G~~v~~~~ie~~ 401 (483)
T PRK03640 326 VVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDE----EGFLYVLDRRSDLIISGGENIYPAEIEEV 401 (483)
T ss_pred cCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcC----CCCEEEeecccCeEEeCCEEECHHHHHHH
Confidence 3668999999998852 221 489999998764 345889999998 99999999999999
Q ss_pred HHH
Q 014974 280 MES 282 (415)
Q Consensus 280 v~~ 282 (415)
+.+
T Consensus 402 i~~ 404 (483)
T PRK03640 402 LLS 404 (483)
T ss_pred HHh
Confidence 974
No 94
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.46 E-value=0.0077 Score=64.37 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.0
Q ss_pred eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 239 YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 239 YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
|++||++++.. .-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 432 ~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~ 475 (576)
T PRK05620 432 LRTGDVGSVTR----DGFLTIHDRARDVIRSGGEWIYSAQLENYIMAA 475 (576)
T ss_pred EecCceEEEcC----CceEEEEechhhhhhcCCEEEcHHHHHHHHhcC
Confidence 89999998754 347899999887 899999999999999753
No 95
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.41 E-value=0.024 Score=61.53 Aligned_cols=248 Identities=15% Similarity=0.157 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCCh--HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC-CC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSM--SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ-PP 183 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~--~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~-~~ 183 (415)
|...+.|++...+.. ...+. +.|+ .|..+|.- +.-...+++.++.-|+. +.|+.||+. .=+...+.. |.
T Consensus 339 pt~~r~l~~~~~~~~---~~~~~-~sLk--~~~S~Gepi~~~~~ew~~~~~~~~pv~-e~~~qtEtG~~~i~~~~g~~p~ 411 (626)
T KOG1175|consen 339 PTAYRLLRRLGQEDV---TSYSL-KSLR--TCGSVGEPINPEAWEWWKRVTGLDPIY-ETYGQTETGGICITPKPGKLPI 411 (626)
T ss_pred cHHHHHHHHhccccc---ccccc-ceEE--EEeecCccCCcchHHHHHHhcCccchh-hceeeeccCceeeeccCCCCCc
Confidence 555555555554310 11232 4566 45555632 33346677777744677 999999952 212112222 22
Q ss_pred CCceeeecCCce-EEEeeeCCcccccccCCceeecCCcccC-ceEEEEeccc--cc----eee----------------e
Q 014974 184 QTTRFVMLPTAA-YFEFLPFDMEKNEAVGEETVDFSGVEIG-KMYEVVVTTY--RG----FYR----------------Y 239 (415)
Q Consensus 184 ~~~~~~l~~~~~-ffEFIp~~~~~~~~~~~~~l~l~ele~G-~~YelVvTt~--~G----LyR----------------Y 239 (415)
..++. -.|... .++.++++ ++.+ +.+ +..+|+++.. .| +|+ |
T Consensus 412 ~pg~~-~~p~~g~~v~i~de~--------g~~~-----~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y 477 (626)
T KOG1175|consen 412 KPGSA-GKPFPGYDVQILDEN--------GNEL-----PPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYY 477 (626)
T ss_pred Ccccc-CCCCCCcceEEECCC--------CCCc-----CCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceE
Confidence 22222 223332 34444431 3333 333 6788888764 23 333 8
Q ss_pred eeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceE-EEEE
Q 014974 240 RLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKL-MIFV 315 (415)
Q Consensus 240 riGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y-~l~v 315 (415)
.+||-.+.+ +.=-+.+.||.|+ +.|-+++-.+|++|+.+.- .+.|-.|+.-.....+.- ..|+
T Consensus 478 ~tGD~~~rd----~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp---------~VaEsAvVg~p~~~~ge~v~aFv 544 (626)
T KOG1175|consen 478 FTGDGGRRD----EDGYYWILGRVDDVINVSGHRIGTAEIESALVEHP---------AVAESAVVGSPDPIKGEVVLAFV 544 (626)
T ss_pred EecCceEEc----CCceEEEEecccccccccceeecHHHHHHHHhhCc---------chhheeeecCCCCCCCeEEEEEE
Confidence 899998876 3567899999998 8999999999999996531 223344332111112222 2555
Q ss_pred EeecCccccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCCCCe-EEEEc---CCChHHHHHHHHHhcCCCCCCCCCCcc
Q 014974 316 EIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPL-SVSIV---KPGTFDRLLQVAIEKGAPASQYKPPKI 390 (415)
Q Consensus 316 E~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l~p~-~v~~v---~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~ 390 (415)
=+..+ ..+.+ ++.++|-..+ | +.|-+.-| .|..| +.=..-+.|++.+++-.+.-|++-.-.
T Consensus 545 vl~~g----~~~~~---~L~kel~~~V-------R~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~~~d~st 610 (626)
T KOG1175|consen 545 VLKSG----SHDPE---QLTKELVKHV-------RSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKAVGDTST 610 (626)
T ss_pred EEcCC----CCChH---HHHHHHHHHH-------HhhcCcccccceeEecCCCCccccchhHHHHHHHHhccCccccccc
Confidence 55543 12222 3334444444 3 12333333 34443 333456778887777544449999999
Q ss_pred cCCHHHHHHHhcc
Q 014974 391 VRNREIVEFMEGC 403 (415)
Q Consensus 391 ~~~~~~~~~L~~~ 403 (415)
+.|++.++.+.+.
T Consensus 611 ~~dp~v~~~~~~~ 623 (626)
T KOG1175|consen 611 LADPSVIDHLRSI 623 (626)
T ss_pred cCChHHHHHHHHh
Confidence 9999999988775
No 96
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=97.40 E-value=0.0066 Score=63.62 Aligned_cols=116 Identities=20% Similarity=0.092 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhCCCCccccccccCceEEEeeCC-CCC--CCCCceeeecCCceEEEeeeCCcccccccCCceeecCCccc
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLD-IAQ--PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 222 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~-~~~--~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~ 222 (415)
..-+..+++.+| ++++ ..||+||+..++-.. +.. ... ......++ .-.+.++.+ ++ ++..
T Consensus 301 ~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~g-~~~~i~d~~--------~~-----~~~~ 363 (517)
T PRK08008 301 DQEKDAFEERFG-VRLL-TSYGMTETIVGIIGDRPGDKRRWP-SIGRPGFC-YEAEIRDDH--------NR-----PLPA 363 (517)
T ss_pred HHHHHHHHHHhC-CeEE-eeccccccccccccCCccccccCC-ccccCCCC-cEEEEECCC--------CC-----CCCC
Confidence 445566666666 8888 899999974322101 100 000 00111222 233444421 22 3458
Q ss_pred CceEEEEeccc------ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHH
Q 014974 223 GKMYEVVVTTY------RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 279 (415)
Q Consensus 223 G~~YelVvTt~------~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~a 279 (415)
|+.+||+++.. .|.| -|++||+.++.. .-.+.|+||.++ +.|++++..+|+++
T Consensus 364 g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~i~p~~iE~~ 439 (517)
T PRK08008 364 GEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE----EGFFYFVDRRCNMIKRGGENVSCVELENI 439 (517)
T ss_pred CCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC----CCcEEEeecccceEEeCCEEECHHHHHHH
Confidence 99999999852 1211 289999877754 347899999998 78999999999998
Q ss_pred HHH
Q 014974 280 MES 282 (415)
Q Consensus 280 v~~ 282 (415)
+.+
T Consensus 440 l~~ 442 (517)
T PRK08008 440 IAT 442 (517)
T ss_pred HHh
Confidence 864
No 97
>PRK12316 peptide synthase; Provisional
Probab=97.40 E-value=0.0027 Score=83.92 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCCCceEEEEecCCh--HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC---CCCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGSM--SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA---QPPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~~--~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~---~~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
.|++++ ++++|.. .....++.+.+++++++ ..||.||+.+++..... ...........++..+ ..++.+
T Consensus 769 ~~~l~~--~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~-~i~d~~-- 842 (5163)
T PRK12316 769 CTSLRR--IVCSGEALPADAQEQVFAKLPQAGLY-NLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLAC-YILDAN-- 842 (5163)
T ss_pred CCCccE--EEEeeccCCHHHHHHHHHhCCCCeEE-eCcCcChheeeeeEEecccccCCCCCCccccCCCEE-EEECCC--
Confidence 467773 3445532 45556676667778999 99999998653321110 0000011112333322 223221
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---ccee--------------------eeeeCCEEEEeeecCCCcEEEEEee
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------------RYRLGDIVKVVDFYNSSPQVEFVMR 262 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy--------------------RYriGDvV~V~gf~~~~P~i~F~gR 262 (415)
.++ +..|+.+||+|... .|.| -|++||+++... .-.+.|+||
T Consensus 843 ------~~~-----~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~----dG~l~~~GR 907 (5163)
T PRK12316 843 ------LEP-----VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRA----DGVIEYAGR 907 (5163)
T ss_pred ------CCC-----CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECC----CCCEEeecc
Confidence 222 55899999999653 2222 399999999864 347999999
Q ss_pred CCC---cceeecCHHHHHHHHHHH
Q 014974 263 APK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 263 ~~~---l~gEkl~e~~v~~av~~a 283 (415)
.+. ++|+++...+|++++.+.
T Consensus 908 ~d~~ik~~G~rI~~~EIE~~l~~~ 931 (5163)
T PRK12316 908 IDHQVKLRGLRIELGEIEARLLEH 931 (5163)
T ss_pred cCCEEEEceEEcChHHHHHHHHhC
Confidence 998 999999999999999753
No 98
>PRK05857 acyl-CoA synthetase; Validated
Probab=97.37 E-value=0.014 Score=61.99 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCCh--HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCC---
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSM--SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQ--- 181 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~--~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~--- 181 (415)
|..+..|....... ..-.|.++++ +.+|.. ..-...+ +.+| ++++ ..||+||+. +.+......
T Consensus 268 P~~~~~l~~~~~~~------~~~~~~lr~~--~~gG~~~~~~~~~~~-~~~g-~~i~-~~YG~TE~~~~~~~~~~~~~~~ 336 (540)
T PRK05857 268 PTLLSKLVSELKSA------NATVPSLRLV--GYGGSRAIAADVRFI-EATG-VRTA-QVYGLSETGCTALCLPTDDGSI 336 (540)
T ss_pred hHHHHHHHhccccC------CCcCccceEE--EEcCccCCchhHHHH-HHhC-Ceee-cccCCCcCCceeeecccccccc
Confidence 55666665443321 1124677733 334431 2222323 3344 8888 999999963 223211000
Q ss_pred ---CCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee-------------eeeeC
Q 014974 182 ---PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLG 242 (415)
Q Consensus 182 ---~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy-------------RYriG 242 (415)
.++ ......++.. ..+++.+. ...+....+..|+.+||+|+.. .|.| .|++|
T Consensus 337 ~~~~~~-~~G~~~~g~~-v~i~d~~~-------~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TG 407 (540)
T PRK05857 337 VKIEAG-AVGRPYPGVD-VYLAATDG-------IGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTG 407 (540)
T ss_pred cccccC-CcCcccCCcE-EEEECccc-------cCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceecc
Confidence 010 1112333332 23333221 1233334566789999999875 2333 38999
Q ss_pred CEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 243 DIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 243 DvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
|+++... .-.+.|+||.++ +.|+|++..+|+.++..
T Consensus 408 Dlg~~d~----~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 446 (540)
T PRK05857 408 DLLERRE----DGFFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446 (540)
T ss_pred ceEEEcC----CceEEEeccccccEecCCEEECHHHHHHHHHh
Confidence 9988743 457999999998 88999999999998874
No 99
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.36 E-value=0.0056 Score=61.19 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+|++||++++ . .-.+.|+||.++ +.|++++..+|+.++.+.
T Consensus 235 ~~~TGDl~~~-~----~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 235 WFRTDDLGAL-D----DGVLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred ceecccEEEE-e----CCEEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 7999999998 2 237899999998 889999999999998754
No 100
>PLN03102 acyl-activating enzyme; Provisional
Probab=97.36 E-value=0.0012 Score=70.76 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=46.2
Q ss_pred CceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 223 GKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 223 G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
|+.+||+|+.. .|.| +|++||+++... .-.+.|+||.++ +.|+|++..+|++++.+.
T Consensus 390 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~----dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (579)
T PLN03102 390 KTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHP----DGHVEIKDRSKDIIISGGENISSVEVENVLYKY 465 (579)
T ss_pred CCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEcC----CCeEEEEeccCcEEEECCEEECHHHHHHHHHhC
Confidence 36799999863 4444 699999998743 347899999998 789999999999999753
No 101
>PRK12316 peptide synthase; Provisional
Probab=97.36 E-value=0.0034 Score=82.98 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCC--h-HHHHHHHHHhhCCCCccccccccCceEEEee---CCCCC
Q 014974 108 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIAQ 181 (415)
Q Consensus 108 p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~---~~~~~ 181 (415)
|..++.|...... ....|.|+ +++.|| + .....++.+.++++.++ .+||.||+.+..- ..+..
T Consensus 2244 P~~~~~l~~~~~~-------~~~~~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~ 2312 (5163)
T PRK12316 2244 PVYLQQLAEHAER-------DGRPPAVR---VYCFGGEAVPAASLRLAWEALRPVYLF-NGYGPTEAVVTPLLWKCRPQD 2312 (5163)
T ss_pred hHHHHHHHhhhhc-------ccCCccee---EEEEecccCCHHHHHHHHHhCCCcEEE-ECccchhheeeeeeeeccccc
Confidence 6666666554322 11234777 334443 2 44556666667778888 9999999855321 11111
Q ss_pred CCC---CceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccc---ccee------------------
Q 014974 182 PPQ---TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------ 237 (415)
Q Consensus 182 ~~~---~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy------------------ 237 (415)
+.+ .......++.. .-.++. +.+ .|..|+.+||.|... .|.|
T Consensus 2313 ~~~~~~~~iG~p~~~~~-~~i~d~--------~~~-----~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~ 2378 (5163)
T PRK12316 2313 PCGAAYVPIGRALGNRR-AYILDA--------DLN-----LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSAS 2378 (5163)
T ss_pred ccCCCcCCcccccCCCE-EEEECC--------CCC-----CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCC
Confidence 110 00111122221 111221 122 356899999999643 2221
Q ss_pred ---eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 ---RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 ---RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
-|||||+++... .-.+.|+||.++ ++|.++...+|+.++.+.
T Consensus 2379 ~~~~yrTGDl~~~~~----dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~ 2426 (5163)
T PRK12316 2379 GERLYRTGDLARYRA----DGVVEYLGRIDHQVKIRGFRIELGEIEARLQAH 2426 (5163)
T ss_pred CCeeEecccEEEEcC----CCcEEEecCCCCeEEEcCccCChHHHHHHHhhC
Confidence 399999999864 346999999998 999999999999998753
No 102
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=97.36 E-value=0.0061 Score=62.11 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=44.9
Q ss_pred ceEEEEeccc---cceee-------------eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 224 KMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 224 ~~YelVvTt~---~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
+.+||++++. .|.|+ |++||+++... ...+.|+||.++ +.|++++..+|++++.+
T Consensus 291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 291 GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDG----EGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcC----CCCEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 5689999875 23332 99999999875 357899999998 89999999999999974
No 103
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=97.31 E-value=0.0012 Score=72.19 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=72.9
Q ss_pred EEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEe--eCCCC-CCCCCceeeecCCceEEEeeeCCcccccccCCc
Q 014974 139 CVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI--NLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEE 213 (415)
Q Consensus 139 ~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi--~~~~~-~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~ 213 (415)
.+.+|| +++-..++.+.++..+++ .+||.||+..++ +.... ...+.. ....|+.- .-+++.++. +.
T Consensus 387 ~~~~Ggapl~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~gsv-G~p~p~~e-v~i~d~~~~------g~ 457 (660)
T PLN02861 387 LLLSGAAPLPRHVEEFLRVTSCSVLS-QGYGLTESCGGCFTSIANVFSMVGTV-GVPMTTIE-ARLESVPEM------GY 457 (660)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCee-EecchhhhhhceeecccccCCCCCCc-cCccCceE-EEEEEcccc------Cc
Confidence 334444 333344555556655677 899999964322 11110 001111 11223321 223332111 10
Q ss_pred eeecCCcccCceEEEEecc---ccceee-------------eeeCCEEEEeeecCCCcEEEEEeeCCC---c-ceeecCH
Q 014974 214 TVDFSGVEIGKMYEVVVTT---YRGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISE 273 (415)
Q Consensus 214 ~l~l~ele~G~~YelVvTt---~~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l-~gEkl~e 273 (415)
..+..|..+||.|.. ..|.|. |+|||++++.. .=.+.|+||.++ + .||++++
T Consensus 458 ----~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~GR~kd~Ik~~~G~~I~p 529 (660)
T PLN02861 458 ----DALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQP----NGAMKIIDRKKNIFKLSQGEYVAV 529 (660)
T ss_pred ----ccCCCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECC----CCcEEEEeccccceEcCCCeEEcH
Confidence 123355678998865 356553 89999998864 246899999998 4 4999999
Q ss_pred HHHHHHHHH
Q 014974 274 RDLMSAMES 282 (415)
Q Consensus 274 ~~v~~av~~ 282 (415)
.+|++++.+
T Consensus 530 ~eIE~~l~~ 538 (660)
T PLN02861 530 ENLENTYSR 538 (660)
T ss_pred HHHHHHHhc
Confidence 999998874
No 104
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.29 E-value=0.0014 Score=70.45 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCCCceEEEEecCCh-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecC----CceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGSM-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLP----TAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~----~~~ffEFIp~~~~ 205 (415)
.+++++ +.+++. ..-++++.+.+|...++ ..||.||+.+++.. ....++.... ..+ ...+..|-+ +..
T Consensus 313 ~~~l~~---~~g~~l~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~ 385 (600)
T PRK08279 313 DHRLRL---MIGNGLRPDIWDEFQQRFGIPRIL-EFYAASEGNVGFIN-VFNFDGTVGR-VPLWLAHPYAIVKYDV-DTG 385 (600)
T ss_pred CcceeE---EecCCCCHHHHHHHHHHhCcceee-eeecccccceeecc-cCCCCccccc-ccccccccceeeeecc-CcC
Confidence 346663 334443 56667888888855677 99999997654321 1111111111 111 222222211 110
Q ss_pred cccccCCceeecCCcccCceEEEEec--c---ccce----------e---------eeeeCCEEEEeeecCCCcEEEEEe
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVT--T---YRGF----------Y---------RYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvT--t---~~GL----------y---------RYriGDvV~V~gf~~~~P~i~F~g 261 (415)
. . -....-.+.++..|+.+|+++. . +.|. . -|++||++++.. .-.+.|+|
T Consensus 386 ~-~-i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~----dG~l~~~G 459 (600)
T PRK08279 386 E-P-VRDADGRCIKVKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDG----FGHAQFVD 459 (600)
T ss_pred c-e-eeCCCCccccCCCCCceeEEEEecCcccccccCCchhhHHHHhhcccCCCCceEeecceEEEcC----CccEEEec
Confidence 0 0 0000112335778889998742 1 1121 1 289999988874 23689999
Q ss_pred eCCC---cceeecCHHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~ 282 (415)
|.++ +.|+|++..+|++++.+
T Consensus 460 R~~d~ik~~G~~i~p~eIE~~l~~ 483 (600)
T PRK08279 460 RLGDTFRWKGENVATTEVENALSG 483 (600)
T ss_pred ccCCeEEECCcccCHHHHHHHHhc
Confidence 9998 88999999999999986
No 105
>PRK12467 peptide synthase; Provisional
Probab=97.29 E-value=0.0013 Score=85.14 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEee---CCCCCCCC--CceeeecCCceEEEeeeCCc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIAQPPQ--TTRFVMLPTAAYFEFLPFDM 204 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~---~~~~~~~~--~~~~~l~~~~~ffEFIp~~~ 204 (415)
+++++ .+++|. + ...+.++++.+++++++ ..||.||+.+.+. ........ .......++.. +..++.+
T Consensus 771 ~~lr~--i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~~- 845 (3956)
T PRK12467 771 RPQRA--LVCGGEALQVDLLARVRALGPGARLI-NHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLG-LYILDHY- 845 (3956)
T ss_pred CcccE--EEEEeecCCHHHHHHHHHhCCCCEEE-eCcCCChhhhheeeEecccccccCCCCcccCCcCCCE-EEEECCC-
Confidence 45563 334443 2 45556777777779999 9999999754331 11111000 00112233432 2233321
Q ss_pred ccccccCCceeecCCcccCceEEEEeccc---ccee---------------------eeeeCCEEEEeeecCCCcEEEEE
Q 014974 205 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------------RYRLGDIVKVVDFYNSSPQVEFV 260 (415)
Q Consensus 205 ~~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLy---------------------RYriGDvV~V~gf~~~~P~i~F~ 260 (415)
.+ .+..|+.+||+|+.. .|.| -|||||+++... .-.++|+
T Consensus 846 -------~~-----~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l~~~ 909 (3956)
T PRK12467 846 -------LN-----PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRA----DGVIEYL 909 (3956)
T ss_pred -------CC-----CCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcC----CCcEEEe
Confidence 22 255899999999753 2222 399999999853 3369999
Q ss_pred eeCCC---cceeecCHHHHHHHHHH
Q 014974 261 MRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 261 gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
||.++ ++|+++...+|+.++.+
T Consensus 910 GR~d~~vki~G~rI~~~eIE~~L~~ 934 (3956)
T PRK12467 910 GRMDHQVKIRGFRIELGEIEARLLA 934 (3956)
T ss_pred ccccCeEEECCEecCHHHHHHHHHh
Confidence 99998 99999999999999875
No 106
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=97.28 E-value=0.0062 Score=64.56 Aligned_cols=229 Identities=15% Similarity=0.149 Sum_probs=135.1
Q ss_pred EEEecCChHHHHHHHHHhhCCCCccccccccCceEEEe-eCCCCCCCCCceee-ecCCceEEEeeeCCcccc---cccCC
Q 014974 138 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQPPQTTRFV-MLPTAAYFEFLPFDMEKN---EAVGE 212 (415)
Q Consensus 138 ~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi-~~~~~~~~~~~~~~-l~~~~~ffEFIp~~~~~~---~~~~~ 212 (415)
.+|-.|--++..+.+.+.||...+ ++.||||||-+++ |++...-. .+-+. +.....=|+.|-.|.... -.+++
T Consensus 361 la~GNGLR~diW~~Fv~RFg~~~I-gE~YgaTEgn~~~~N~d~~vGA-~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G 438 (649)
T KOG1179|consen 361 LAYGNGLRPDIWQQFVKRFGIIKI-GEFYGATEGNSNLVNYDGRVGA-CGFMSRLLKLLYPFRLIKVDPETGEPIRDSQG 438 (649)
T ss_pred EEecCCCCchHHHHHHHHcCCCeE-EEEeccccCcceeeeecCcccc-ccchhhhhhhccceEEEEecCCCCceeecCCc
Confidence 355556557777888899994445 4999999997754 66543211 11111 111222377776654311 12233
Q ss_pred ceeecCCcccCceEEEEec--------cccc-----------eee---------eeeCCEEEEeeecCCCcEEEEEeeCC
Q 014974 213 ETVDFSGVEIGKMYEVVVT--------TYRG-----------FYR---------YRLGDIVKVVDFYNSSPQVEFVMRAP 264 (415)
Q Consensus 213 ~~l~l~ele~G~~YelVvT--------t~~G-----------LyR---------YriGDvV~V~gf~~~~P~i~F~gR~~ 264 (415)
-=+. +++||.+.||=. .+-| ++| |++||++.... ---+-|..|++
T Consensus 439 ~Ci~---~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~----~GylYF~DRtG 511 (649)
T KOG1179|consen 439 LCIP---CPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADE----LGYLYFKDRTG 511 (649)
T ss_pred eEEE---CCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEec----CCcEEEeccCC
Confidence 2222 678998866522 1222 344 89999987765 34688999999
Q ss_pred C---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHH
Q 014974 265 K---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLED 340 (415)
Q Consensus 265 ~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d-~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~ 340 (415)
+ =.||+++-.+|++.+..... + . ++.-|-+..+ .++..+-=.+..+. ...-+++.+...+.+
T Consensus 512 DTFRWKGENVsTtEVe~~l~~~~~-~---~--dv~VYGV~VP~~EGRaGMAaI~~~p--------~~~~d~~~l~~~l~~ 577 (649)
T KOG1179|consen 512 DTFRWKGENVSTTEVEDVLSALDF-L---Q--DVNVYGVTVPGYEGRAGMAAIVLDP--------TTEKDLEKLYQHLRE 577 (649)
T ss_pred CceeecCCcccHHHHHHHHhhhcc-c---c--ceeEEEEecCCccCccceEEEEecC--------cccchHHHHHHHHHh
Confidence 9 78999999999888876432 1 1 2223444333 34433433343221 122345556666666
Q ss_pred HhChhHHHhhhcCCCCCeEEEEcCCChHHHHHHHHHhcCCCCCCCCCCcccCCH
Q 014974 341 AFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNR 394 (415)
Q Consensus 341 ~Ln~~Y~~~R~~g~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~ 394 (415)
.| +.|+.=|-.....-++ .-|||+...-.....|-..++++-|.-+-|.
T Consensus 578 ~L-P~YA~P~FlRl~~~i~----~TgTFKl~K~~L~~egf~p~~~~dply~~~~ 626 (649)
T KOG1179|consen 578 NL-PSYARPRFLRLQDEIE----KTGTFKLQKTELQKEGFNPAIISDPLYYLDN 626 (649)
T ss_pred hC-ccccchHHHHHHhhhh----cccchhhHHHHHHHccCCccccCCceEEEec
Confidence 66 7777666544334333 4699996555555568888999988765433
No 107
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=97.27 E-value=0.0024 Score=71.18 Aligned_cols=130 Identities=14% Similarity=0.230 Sum_probs=74.8
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE--EEeeCCCCCCCCCceeeecCCceEEEeeeCCcccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY--VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 207 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~--igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~ 207 (415)
++|+ .++.+|+ + +.....++..+| ++++ .+||.||+. +.++......++.....+.|+. -+..++.++.
T Consensus 461 ~~lr--~~~sGGapl~~~~~~~~~~~~g-~~i~-~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~-e~ki~d~~~~-- 533 (746)
T PTZ00342 461 PNLE--VILNGGGKLSPKIAEELSVLLN-VNYY-QGYGLTETTGPIFVQHADDNNTESIGGPISPNT-KYKVRTWETY-- 533 (746)
T ss_pred CCeE--EEEEcCCCCCHHHHHHHHHhcC-CCEE-EeeccCcccceeeeccCCCCCcccccCcCCCcE-EEEEeccccc--
Confidence 6777 3333443 2 445566666666 8888 999999963 2332111111111111112332 2233332211
Q ss_pred cccCCceeecCCcccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---c-
Q 014974 208 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S- 266 (415)
Q Consensus 208 ~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l- 266 (415)
. ....+..+||++... .|.|+ |+|||++++.. .-.+.|+||.++ +
T Consensus 534 -----~-----~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~----dG~l~i~gR~kdlIkls 599 (746)
T PTZ00342 534 -----K-----ATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK----NGSLTFLDRSKGLVKLS 599 (746)
T ss_pred -----c-----cCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC----CCeEEEEccCCCeEEeC
Confidence 0 011234578887542 44432 89999999864 337999999999 3
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.||++++.+|++++.+
T Consensus 600 ~Ge~I~p~eIE~~l~~ 615 (746)
T PTZ00342 600 QGEYIETDMLNNLYSQ 615 (746)
T ss_pred CCEEEchHHHHHHHhc
Confidence 4899999999998875
No 108
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=97.27 E-value=0.01 Score=62.91 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=42.3
Q ss_pred ceEEEEeccc---ccee-----------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 224 KMYEVVVTTY---RGFY-----------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 224 ~~YelVvTt~---~GLy-----------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
...||++... .|.| .|++||++++.. .=.+.|+||.++ +.|+|++..+|+.++.+
T Consensus 383 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 454 (542)
T PRK06018 383 TFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDA----YGYMRITDRSKDVIKSGGEWISSIDLENLAVG 454 (542)
T ss_pred ceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcC----CccEEEEecCCCeEEECCEEECHHHHHHHHHh
Confidence 4678888632 2343 299999988643 236899999998 88999999999998875
No 109
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.26 E-value=0.0074 Score=69.87 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=36.5
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+|++||+++... .-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 1011 ~~~TGDl~~~d~----dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 1055 (1140)
T PRK06814 1011 WYDTGDIVTIDE----EGFITIKGRAKRFAKIAGEMISLAAVEELAAEL 1055 (1140)
T ss_pred eEecCCEEEECC----CCeEEEEecccCeeeeCCEEECHHHHHHHHHhc
Confidence 699999999854 457999999998 889999999999998754
No 110
>PRK05691 peptide synthase; Validated
Probab=97.25 E-value=0.004 Score=81.37 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=83.4
Q ss_pred CCCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceEEEeeCCCC-CCCC--CceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QPPQ--TTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~-~~~~--~~~~~l~~~~~ffEFIp~~~~ 205 (415)
.|+|+.| +.+|. + ....+++.+.+++++++ ..||.||+.+.+..... ..+. .......++.. ...++.+
T Consensus 1387 ~~~lr~~--~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~~-- 1460 (4334)
T PRK05691 1387 CTSLRRL--FSGGEALPAELRNRVLQRLPQVQLH-NRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVL-CRVLDAE-- 1460 (4334)
T ss_pred CCcccEE--EEeecCCCHHHHHHHHHhCCCcEEE-eCCCcChheeeeeeeecccccCCCCcccceeCCCE-EEEECCC--
Confidence 4678843 33443 2 55557777778889999 99999997654321110 0000 01112223332 2333321
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---cce---------------------eeeeeCCEEEEeeecCCCcEEEEEe
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF---------------------YRYRLGDIVKVVDFYNSSPQVEFVM 261 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GL---------------------yRYriGDvV~V~gf~~~~P~i~F~g 261 (415)
.+ .+.+|+.+||+|... .|. --||+||+++... .-.+.|+|
T Consensus 1461 ------~~-----~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~----dG~l~~~G 1525 (4334)
T PRK05691 1461 ------LN-----LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA----DGALEYLG 1525 (4334)
T ss_pred ------CC-----CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC----CCCEEEec
Confidence 22 355899999999642 111 1389999999764 34799999
Q ss_pred eCCC---cceeecCHHHHHHHHHHH
Q 014974 262 RAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 262 R~~~---l~gEkl~e~~v~~av~~a 283 (415)
|.+. ++|+++...+|+.++.+.
T Consensus 1526 R~d~qiki~G~rie~~eIE~~l~~~ 1550 (4334)
T PRK05691 1526 RLDQQVKLRGFRVEPEEIQARLLAQ 1550 (4334)
T ss_pred ccCcEEEECCEEcCHHHHHHHHHhC
Confidence 9998 999999999999998753
No 111
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=97.24 E-value=0.0091 Score=65.90 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=35.5
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|++||+.++.. .-.+.|+||.++ +.|+++++.+|++++.+.
T Consensus 592 w~~TGDlg~~d~----dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~ 636 (718)
T PRK08043 592 WYDTGDIVRFDE----QGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGV 636 (718)
T ss_pred eEecCCEEEEcC----CCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhC
Confidence 489999998853 336889999998 889999999999988754
No 112
>PLN03052 acetate--CoA ligase; Provisional
Probab=97.16 E-value=0.031 Score=62.17 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=35.4
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
-|++||+++++. .=.+.|+||.++ +.|+++...+|+++|...
T Consensus 590 ~~~tGDl~~~d~----dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~ 634 (728)
T PLN03052 590 LRRHGDIFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERVCNAA 634 (728)
T ss_pred EEecCceEEECC----CCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhc
Confidence 389999999864 235899999998 899999999999998643
No 113
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=97.12 E-value=0.0029 Score=66.90 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCCceEEEEecCC-h-HHHHHHHHHhhCCCCccccccccCceE-EEeeCCCCCCCCC-c-eeeecCCceEEEeeeCCccc
Q 014974 132 PNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQPPQT-T-RFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-igi~~~~~~~~~~-~-~~~l~~~~~ffEFIp~~~~~ 206 (415)
|++++ ++.+|. + ......+++. +++++ ..||+||+. +++.....+.... . .....++ ..++.++.+
T Consensus 302 ~~lr~--i~~gG~~~~~~~~~~~~~~--~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~--- 372 (547)
T PRK06087 302 SALRF--FLCGGTTIPKKVARECQQR--GIKLL-SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAG-VEIKVVDEA--- 372 (547)
T ss_pred CCeEE--EEEcCCCCCHHHHHHHHHc--CCcEE-EEecccccCCccccCCCcchhhcCCcCCccCCC-ceEEEEcCC---
Confidence 56773 334443 2 4444555543 58988 999999963 2221111110000 0 1112333 345555522
Q ss_pred ccccCCceeecCCcccCceEEEEecccc---cee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 266 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~~---GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l 266 (415)
+. ++..|+.+||++.... |.| -|++||++++.. ...+.|+||.++ +
T Consensus 373 -----~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~~ 438 (547)
T PRK06087 373 -----RK-----TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE----AGYIKITGRKKDIIVR 438 (547)
T ss_pred -----CC-----CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC----CCCEEEEecchhhhhc
Confidence 22 3558888998885531 111 389999998753 356899999987 8
Q ss_pred ceeecCHHHHHHHHHH
Q 014974 267 SFEIISERDLMSAMES 282 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~ 282 (415)
.|++++..+|++++..
T Consensus 439 ~G~~v~p~~iE~~l~~ 454 (547)
T PRK06087 439 GGENISSREVEDILLQ 454 (547)
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999999975
No 114
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=97.11 E-value=0.0011 Score=71.79 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=89.7
Q ss_pred EecCCh--HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccccccCCceeec
Q 014974 140 VTTGSM--SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDF 217 (415)
Q Consensus 140 ~~~G~~--~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l 217 (415)
..+||+ ++...++=+-.| +++. .+||-||..-++.+++. ..|.+ .+ -+++++-
T Consensus 358 ~~sGGa~l~~~~~~f~~~lG-i~i~-eGYGlTEts~~~~v~~~----------------~~~~~-gt------vG~p~p~ 412 (613)
T COG1022 358 ALSGGAPLSPELLHFFRSLG-IPIL-EGYGLTETSAVVSVNPP----------------DRFVL-GT------VGKPLPG 412 (613)
T ss_pred EEecCCcCCHHHHHHHHHcC-CCeE-EEecccccccceEEccc----------------cCccc-CC------cCCcCCC
Confidence 344543 444333323345 9999 99999997555544421 12222 11 2788889
Q ss_pred CCcccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC----cceeecCHHHH
Q 014974 218 SGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDL 276 (415)
Q Consensus 218 ~ele~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~----l~gEkl~e~~v 276 (415)
-|++.++++||.|-+. .|-|. |+|||+..++. .=.+.++||++. .+||++.++-+
T Consensus 413 ~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~----~g~L~i~gRkK~~i~l~~GknIaP~~I 488 (613)
T COG1022 413 IEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----DGYLVITGRKKELIKLSNGKNIAPEPI 488 (613)
T ss_pred ceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC----CCcEEEeecccceEECCCCcccChHHH
Confidence 9999999999999873 78887 89999999887 368999999998 78899999999
Q ss_pred HHHHHHHHHHhhhccCceEEEEEEeecC
Q 014974 277 MSAMESFQMMLRNVMAVEIVEFAGYTNL 304 (415)
Q Consensus 277 ~~av~~a~~~l~~~~g~~l~~f~~~~d~ 304 (415)
+..+.+. --+...+++.+.
T Consensus 489 E~~l~~~---------~~I~qi~vvg~~ 507 (613)
T COG1022 489 ESKLAKS---------PLIEQICVVGDD 507 (613)
T ss_pred HHHHhcC---------CCeeEEEEEecC
Confidence 9966532 244566766644
No 115
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.04 E-value=0.0052 Score=65.90 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=89.7
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCce--EEEeeCCCCC-CCCCceeeecCCceEEEeeeCCcc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASEC--YVGINLDIAQ-PPQTTRFVMLPTAAYFEFLPFDME 205 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg--~igi~~~~~~-~~~~~~~~l~~~~~ffEFIp~~~~ 205 (415)
.|.++.+. ++|+ ...-..++++.+|...+. .+||-||. .+++|.+... .++.... +++ ..-=.|..++
T Consensus 298 l~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~-~~~--g~~~~v~~e~- 370 (537)
T KOG1176|consen 298 LSSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR-LLP--GVRVKVLDET- 370 (537)
T ss_pred CCccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc-ccc--ceEEEeeCCC-
Confidence 35666432 4443 367778899999977777 99999995 5677777662 2322222 333 2233333332
Q ss_pred cccccCCceeecCCcccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 206 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 206 ~~~~~~~~~l~l~ele~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
++. +-+++.+||.+=.. .|-|. |++||+ ||.+.-=.|.+++|.+.
T Consensus 371 ------g~~-----l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDi----Gy~D~DG~l~IvdR~KdlIk 435 (537)
T KOG1176|consen 371 ------GVS-----LGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDL----GYFDEDGYLYIVDRSKDLIK 435 (537)
T ss_pred ------CCC-----CCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCce----EEEcCCCeEEEecchhhhee
Confidence 333 34888899999554 55333 789998 66667779999999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~a 283 (415)
..|+++++.+|++++..-
T Consensus 436 ~~G~qv~P~EiE~vL~~h 453 (537)
T KOG1176|consen 436 YGGEQVSPAEIEAVLLTH 453 (537)
T ss_pred eCCEEeCHHHHHHHHHhC
Confidence 888999999999988753
No 116
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=97.02 E-value=0.0047 Score=67.72 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=45.3
Q ss_pred cccCceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---c-ceeecCHHHHHHH
Q 014974 220 VEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLMSA 279 (415)
Q Consensus 220 le~G~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l-~gEkl~e~~v~~a 279 (415)
+..|..+||+|... .|.| .|+|||+.++.. .-.+.|+||.++ + .||++++.+|+.+
T Consensus 460 ~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~----dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~ 535 (660)
T PLN02430 460 LGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILP----NGVLKIIDRKKNLIKLSQGEYVALEYLENV 535 (660)
T ss_pred CCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECC----CCcEEEEEcccccEEcCCCcEEchHHHHHH
Confidence 33556789999763 4544 389999999853 236899999998 3 4899999999998
Q ss_pred HHH
Q 014974 280 MES 282 (415)
Q Consensus 280 v~~ 282 (415)
+.+
T Consensus 536 l~~ 538 (660)
T PLN02430 536 YGQ 538 (660)
T ss_pred Hhc
Confidence 864
No 117
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=96.85 E-value=0.0049 Score=67.93 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=44.8
Q ss_pred ccCceEEEEeccc---ccee--------------eeeeCCEEEEeeecCCCcEEEEEeeCCC----cceeecCHHHHHHH
Q 014974 221 EIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDLMSA 279 (415)
Q Consensus 221 e~G~~YelVvTt~---~GLy--------------RYriGDvV~V~gf~~~~P~i~F~gR~~~----l~gEkl~e~~v~~a 279 (415)
.+|..+||.|... .|.| -|+|||+.++.. .-.+.|+||.++ ..|+++.+.+|+++
T Consensus 503 ~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~----dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 503 TPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA----NGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred CCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC----CCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 3556678888652 3333 389999998864 336999999987 46999999999998
Q ss_pred HHHH
Q 014974 280 MESF 283 (415)
Q Consensus 280 v~~a 283 (415)
+.+.
T Consensus 579 l~~~ 582 (700)
T PTZ00216 579 YGQN 582 (700)
T ss_pred HhcC
Confidence 8753
No 118
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=96.84 E-value=0.0014 Score=54.12 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=54.2
Q ss_pred eeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHH
Q 014974 268 FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYK 347 (415)
Q Consensus 268 gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~ 347 (415)
|.++++.+|+++|.+. + + +. .+|.+..+..+...+..+.+|...+ ...+....++++.+|.++|
T Consensus 1 GvnvfP~~Ie~vl~~~-~---~---~~-~~y~i~v~~~~~~D~l~v~vE~~~~---~~~~~~~~~~l~~~i~~~l----- 64 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREF-P---E---VS-PEYQIVVTREGGLDELTVRVELRPG---FSDDAEDLEALAERIAERL----- 64 (96)
T ss_dssp TEEE-HHHHHHHHCTS-T---T---EE-EEEEEEEEEETTEEEEEEEEEESTT---CCTTHHHHHHHHHHHHHHH-----
T ss_pred CcEECHHHHHHHHHhC-c---C---CC-CcEEEEEEcCCCCcEEEEEEEECCc---cCcchHHHHHHHHHHHHHH-----
Confidence 6789999999999865 2 2 21 2888877654445666788998653 1122356777888888888
Q ss_pred HhhhcCCCCCeEEEEcCCChHHH
Q 014974 348 VQRDRGEISPLSVSIVKPGTFDR 370 (415)
Q Consensus 348 ~~R~~g~l~p~~v~~v~~Gtf~~ 370 (415)
|..-.+. ++|.+|++|++++
T Consensus 65 --k~~lgv~-~~V~lv~~gtLpr 84 (96)
T PF14535_consen 65 --KERLGVR-PEVELVPPGTLPR 84 (96)
T ss_dssp --HHHHSS--EEEEEE-TT-S--
T ss_pred --HhhcCce-EEEEEECCCCccC
Confidence 5443455 4999999999996
No 119
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=96.76 E-value=0.0093 Score=64.48 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=29.4
Q ss_pred eeeCCEEEEeeecCCCcEEEEEeeCCC---c-ceeecC--HHHHHHHHH
Q 014974 239 YRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIIS--ERDLMSAME 281 (415)
Q Consensus 239 YriGDvV~V~gf~~~~P~i~F~gR~~~---l-~gEkl~--e~~v~~av~ 281 (415)
|++||+.++.+-....-.+.|+||.++ + .|+|++ +.+++.++.
T Consensus 442 ~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~ 490 (614)
T PRK08180 442 YRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA 490 (614)
T ss_pred eeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh
Confidence 899999998531001224789999976 3 488776 777766654
No 120
>PRK08162 acyl-CoA synthetase; Validated
Probab=96.75 E-value=0.06 Score=56.86 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=44.7
Q ss_pred ceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 224 KMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 224 ~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
+.+||+|+.. .|.| .|++||++++.. .-.+.|+||.++ +.|++++..+|+.++.+.
T Consensus 387 ~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~----dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~ 461 (545)
T PRK08162 387 TIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHP----DGYIKIKDRSKDIIISGGENISSIEVEDVLYRH 461 (545)
T ss_pred ceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcC----CccEEEEecccceEEeCCEEECHHHHHHHHHhC
Confidence 3589999873 3333 389999998764 347899999998 889999999999999753
No 121
>PRK12582 acyl-CoA synthetase; Provisional
Probab=96.73 E-value=0.0055 Score=66.40 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=40.1
Q ss_pred ccCceEEEEeccc---cceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---c-ceeecCHHHHH
Q 014974 221 EIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLM 277 (415)
Q Consensus 221 e~G~~YelVvTt~---~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l-~gEkl~e~~v~ 277 (415)
..|+.+||+|... .|.|. |++||+.++.+-....-.+.|+||.++ + .|+|++...++
T Consensus 419 ~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE 496 (624)
T PRK12582 419 PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLR 496 (624)
T ss_pred cCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHH
Confidence 3688888888552 44442 999999998532111236889999986 3 48999987774
No 122
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=96.64 E-value=0.11 Score=55.59 Aligned_cols=128 Identities=17% Similarity=0.093 Sum_probs=86.1
Q ss_pred CCCCceEEEEecCC--hHHHHHHHHHhhCCCCccccccccCceEEEeeCCCCC--CCCCceeeecCCceEEEeeeCCccc
Q 014974 131 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDMEK 206 (415)
Q Consensus 131 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~--~~~~~~~~l~~~~~ffEFIp~~~~~ 206 (415)
.+.|+++ ..+|. -+.-...+.+.+| +++. ++||.||... +.+.+.. .++.. ....|.. -.+-++.+
T Consensus 289 lssLr~~--~SaGEPLnpe~~~w~~~~~g-~~i~-d~~gqTEtg~-~~~~~~~~~~~g~~-g~p~pG~-~~~vvdd~--- 358 (528)
T COG0365 289 LSSLRVL--GSAGEPLNPEAFEWFYSALG-VWIL-DIYGQTETGM-GFIAGRPPVKNGSS-GLPLPGY-AVRRVDDE--- 358 (528)
T ss_pred chhheee--eccCCCCCHHHHHHHHHHhC-CCEe-ccccccccCc-cccCCCCCcCCCCC-CCCCCCc-eeEEECCC---
Confidence 4566622 23342 2555677778888 9999 9999999762 2222221 12112 3344444 25666543
Q ss_pred ccccCCceeecCCcccCceEEEEeccc-----cceee-------------eeeCCEEEEeeecCCCcEEEEEeeCCC---
Q 014974 207 NEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK--- 265 (415)
Q Consensus 207 ~~~~~~~~l~l~ele~G~~YelVvTt~-----~GLyR-------------YriGDvV~V~gf~~~~P~i~F~gR~~~--- 265 (415)
++. +..|+ ++|++... -|+|+ |.+||.....- -=.|-|+||.++
T Consensus 359 -----g~~-----~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~De----dGy~~i~GR~DDvI~ 423 (528)
T COG0365 359 -----GNP-----VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDE----DGYFWLHGRSDDVIK 423 (528)
T ss_pred -----CCc-----CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEcc----CCCEEEEeeccceEe
Confidence 233 44788 99999864 35777 99999887765 357899999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 014974 266 SSFEIISERDLMSAMESF 283 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~a 283 (415)
+.|..+...+|+++|.+.
T Consensus 424 vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 424 VSGKRIGPLEIESVLLAH 441 (528)
T ss_pred ccCeeccHHHHHHHHHhC
Confidence 889999999999999864
No 123
>PLN02479 acetate-CoA ligase
Probab=96.30 E-value=0.025 Score=60.34 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=44.0
Q ss_pred ceEEEEeccc---ccee-------------eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHH
Q 014974 224 KMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 282 (415)
Q Consensus 224 ~~YelVvTt~---~GLy-------------RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~ 282 (415)
+.+||+++.. .|.| .|++||+.++.. .-.+.|+||.++ +.|++++..+|+.++.+
T Consensus 401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHP----DGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcC----CccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 5689999863 2333 499999998743 346899999998 88999999999999875
No 124
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=95.94 E-value=0.041 Score=56.86 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=35.1
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|++||+.++.+ =.+.|+||.++ +.|+|++..+|++++.+.
T Consensus 333 ~~~TGD~~~~~~-----g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~ 376 (458)
T PRK09029 333 WFATRDRGEWQN-----GELTILGRLDNLFFSGGEGIQPEEIERVINQH 376 (458)
T ss_pred ccCCCCcEEEeC-----CEEEEecccccceeeCCEEeCHHHHHHHHhcC
Confidence 589999999862 25899999998 889999999999998753
No 125
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.79 E-value=0.025 Score=57.91 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCC----ceeeecCCceEEEeeeCCcccccccCCceeecCCcc
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT----TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 221 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~----~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele 221 (415)
+.-+.+++.-+| ..++ -.+|-.||.+-+-- -++|++. ....+.|+. |.-=++. ++++ |.
T Consensus 319 ~~~Arrv~~~lg-C~LQ-QVFGMAEGLvnyTR-LDDp~E~i~~TQGrPlsP~D---EvrvvD~------dg~p-----v~ 381 (542)
T COG1021 319 ATLARRVPAVLG-CQLQ-QVFGMAEGLVNYTR-LDDPPEIIIHTQGRPLSPDD---EVRVVDA------DGNP-----VA 381 (542)
T ss_pred HHHHhhchhhhC-chHH-HHhhhhhhhhcccc-cCCchHheeecCCCcCCCcc---eeEEecC------CCCC-----CC
Confidence 566678888787 7777 77888999876521 1122221 122333332 2221221 2333 55
Q ss_pred cCceEEEEec---cccceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHH
Q 014974 222 IGKMYEVVVT---TYRGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 281 (415)
Q Consensus 222 ~G~~YelVvT---t~~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~ 281 (415)
+||.++|..- |+.|.|| ||+||+|+.+. ---+.+.||.++ -.|||+.-++|++.+-
T Consensus 382 pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~----dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL 457 (542)
T COG1021 382 PGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDP----DGYLVVEGRVKDQINRGGEKIAAEEVENLLL 457 (542)
T ss_pred CCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecC----CceEEEEeeehhhhccccchhhHHHHHHHHh
Confidence 9999999874 5699999 99999999876 446889999998 4579999999999776
Q ss_pred H
Q 014974 282 S 282 (415)
Q Consensus 282 ~ 282 (415)
+
T Consensus 458 ~ 458 (542)
T COG1021 458 R 458 (542)
T ss_pred h
Confidence 5
No 126
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=95.73 E-value=0.044 Score=56.38 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=35.6
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a 283 (415)
.|++||+.+... .-.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 276 ~~~tgD~g~~d~----~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 320 (386)
T TIGR02372 276 RLDLQDRLAWDK----DGGFTILGRKDEILQVGGVNVSPGHVRDILERN 320 (386)
T ss_pred eeecCceEEEcC----CCcEEEecccCCEEEECCEEEcHHHHHHHHHcC
Confidence 378999987643 568999999998 889999999999999853
No 127
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=94.03 E-value=0.15 Score=55.77 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=80.8
Q ss_pred cccCCCCceEEEEecCChH--HHHHHHHHhhCCCCccccccccCceEEEeeCC-CCCC-CCCceeeecCCceEEEeeeCC
Q 014974 128 SKLWPNVRYIKCVTTGSMS--QYCSKIKYYAGEVPVLGGDYFASECYVGINLD-IAQP-PQTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 128 ~~lWP~L~~i~~~~~G~~~--~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~-~~~~-~~~~~~~l~~~~~ffEFIp~~ 203 (415)
..||+|.+ .+++|+++ .-...+-...-+++++ .+||-||+.-|.-+. +.+. .+...- .+|.. -.=++++.
T Consensus 415 ~~LGg~vr---~~~sGaAPls~ev~~F~r~~~g~~v~-eGYGlTEts~g~~~~~~~d~~lgsvG~-p~p~~-~vKL~dvp 488 (691)
T KOG1256|consen 415 QSLGGNVR---LIISGAAPLSPEVLTFFRAALGCRVL-EGYGLTETSAGTTLTLPGDNVLGSVGP-PVPGN-EVKLVDVP 488 (691)
T ss_pred HHhcCcee---EEEecCCCCCHHHHHHHHHhcCceee-ecccccccCCceEeccCCCCCCCCcCC-cccCc-eEEEechH
Confidence 46788887 55777643 2222222233449999 999999987433221 1111 111111 22222 33444444
Q ss_pred cccccccCCceeecCCcccCceEEEEecc---ccceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC-
Q 014974 204 MEKNEAVGEETVDFSGVEIGKMYEVVVTT---YRGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 265 (415)
Q Consensus 204 ~~~~~~~~~~~l~l~ele~G~~YelVvTt---~~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~- 265 (415)
+.+ ---.|..+||-|=- +.|-|- .++|||=++.. .-.+.+.+|.++
T Consensus 489 e~n------------y~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p----~G~l~IidRkK~i 552 (691)
T KOG1256|consen 489 EMN------------YDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDP----NGTLKIIDRKKNI 552 (691)
T ss_pred HhC------------cCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECC----CccEEEEecccce
Confidence 321 11145567777733 356554 68999988876 568999999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 014974 266 ---SSFEIISERDLMSAMES 282 (415)
Q Consensus 266 ---l~gEkl~e~~v~~av~~ 282 (415)
-.||.+.+..++++..+
T Consensus 553 fklaqGEyVaPe~IEniy~~ 572 (691)
T KOG1256|consen 553 FKLAQGEYVAPEKIENIYKR 572 (691)
T ss_pred EEcCCCCccChHHHHHHHhc
Confidence 56799999999999886
No 128
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=93.75 E-value=0.21 Score=52.41 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=48.4
Q ss_pred CcccCceEEEEe---ccccceee--------------eeeCCEEEEeeecCCCcEEEEEeeCCC--cce-eecCHHHHHH
Q 014974 219 GVEIGKMYEVVV---TTYRGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK--SSF-EIISERDLMS 278 (415)
Q Consensus 219 ele~G~~YelVv---Tt~~GLyR--------------YriGDvV~V~gf~~~~P~i~F~gR~~~--l~g-Ekl~e~~v~~ 278 (415)
+++.|..+||.+ +|..|.|- |++||+-...- .-.++++||.++ ++| |++.+.+|++
T Consensus 426 ~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----nG~i~iVGRskdmI~rGGENVyP~ElE~ 501 (596)
T KOG1177|consen 426 EVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----NGTIEIVGRSKDMIIRGGENVYPTELED 501 (596)
T ss_pred ccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----CCcEEEEEcccCeEEeCCcccChHHHHH
Confidence 466788899988 45567776 99999987765 456899999999 555 9999999998
Q ss_pred HHHH
Q 014974 279 AMES 282 (415)
Q Consensus 279 av~~ 282 (415)
.+.+
T Consensus 502 fL~~ 505 (596)
T KOG1177|consen 502 FLNK 505 (596)
T ss_pred HHhh
Confidence 8774
No 129
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=91.35 E-value=2.7 Score=45.12 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=84.6
Q ss_pred ecCCh--HHHHHHHHHhhCCCCccccccccCceEE-EeeCCCCCCCCCceeeecCCceEEEeeeCCccc----ccccCCc
Q 014974 141 TTGSM--SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK----NEAVGEE 213 (415)
Q Consensus 141 ~~G~~--~~y~~~l~~~~g~v~~~~~~y~aSEg~i-gi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~----~~~~~~~ 213 (415)
.+||+ ++-.+++-..+=..|+. -|||-||..- |.-.++++..-.....++ ..+++-.++.++.. ++-++++
T Consensus 408 LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~tv~e~~d~~~g~vG~pl-~c~eiKLvdw~EgGY~~~~~PPrGE 485 (678)
T KOG1180|consen 408 LSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAATVLEPEDFSTGRVGAPL-PCCEIKLVDWEEGGYFAKNKPPRGE 485 (678)
T ss_pred EeCCCCCCHHHHHHHHHhcccccc-ccccccchhcccEecChhhcccccccCCc-cceEEEEEEhhhcCccCCCCCCCce
Confidence 45543 44445555444336888 9999999544 333344332211111122 24567777766542 0112222
Q ss_pred ee------ecCCcccCceEEEEeccccceeeeeeCCEEEEeeecCCCcEEEEEeeCCC----cceeecCHHHHHHHHHHH
Q 014974 214 TV------DFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDLMSAMESF 283 (415)
Q Consensus 214 ~l------~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~----l~gEkl~e~~v~~av~~a 283 (415)
++ .+.=.+--++=.-..|...|---|++|||.+++- --++++..|+++ .+||-++=.-|+.|+...
T Consensus 486 I~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~p----dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~ 561 (678)
T KOG1180|consen 486 ILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHP----DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSS 561 (678)
T ss_pred EEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecC----CCcEEEeechhhhhhhcccceeehHHHHHHHhcC
Confidence 22 1111111111111223346655689999999865 458999999998 899999999998877632
Q ss_pred HHHhhhccCceEEEEEEeecCCC
Q 014974 284 QMMLRNVMAVEIVEFAGYTNLES 306 (415)
Q Consensus 284 ~~~l~~~~g~~l~~f~~~~d~~~ 306 (415)
=-+-+-++++|...
T Consensus 562 ---------p~V~NICvyAd~~~ 575 (678)
T KOG1180|consen 562 ---------PYVDNICVYADSNK 575 (678)
T ss_pred ---------cchhheEEeccccc
Confidence 13346788888743
No 130
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.38 E-value=3.2 Score=44.89 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhCCCCccccccccCceEEEeeCCCCCCCCC---ceeeecCCceEEEeeeCCcccccccCCceeecCCccc
Q 014974 146 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT---TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 222 (415)
Q Consensus 146 ~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~~~~~~~~~~---~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~ 222 (415)
.....++....+....+-..||.||..+............ ......+|..+|-+- +. .+. +..
T Consensus 499 ~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild--~~-------~~~-----~p~ 564 (642)
T COG1020 499 LALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD--QG-------LRP-----LPL 564 (642)
T ss_pred HHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC--CC-------CCc-----CCC
Confidence 4444445444431233338899999765443222111110 122233333333222 11 222 346
Q ss_pred CceEEEEeccc---cc------------ee--eeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHH
Q 014974 223 GKMYEVVVTTY---RG------------FY--RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 281 (415)
Q Consensus 223 G~~YelVvTt~---~G------------Ly--RYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~ 281 (415)
|...|+.|+.. .| +. -|++||+++ +..-=.++|+||.+. ++|..+-..+++.++.
T Consensus 565 gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r----~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~ 639 (642)
T COG1020 565 GVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLAR----PLADGALEYLGRKDSQVKIRGFRIELGEIEAALA 639 (642)
T ss_pred CCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeee----ECCCCeEEEeccccceeEeceEecCcHHHHHHHh
Confidence 77778888764 23 11 499999999 223448999999776 9999997777777654
No 131
>PRK09188 serine/threonine protein kinase; Provisional
Probab=72.28 E-value=6.2 Score=40.49 Aligned_cols=40 Identities=10% Similarity=-0.057 Sum_probs=31.5
Q ss_pred eeeeCCEEEEeeecCCCcEEEEEeeCCCcce---eecCHHHHHHHHHHH
Q 014974 238 RYRLGDIVKVVDFYNSSPQVEFVMRAPKSSF---EIISERDLMSAMESF 283 (415)
Q Consensus 238 RYriGDvV~V~gf~~~~P~i~F~gR~~~l~g---Ekl~e~~v~~av~~a 283 (415)
-|+|||+.++.+ ..-.+.|+||.+ .| |++++. |++++.+.
T Consensus 210 W~~TGDlg~~~d---~dG~l~~~gR~~--~G~~i~nV~p~-IE~~L~~h 252 (365)
T PRK09188 210 WLATGKKVYNFI---TRGLFSWSDGEG--TGDRIDNEAPA-IQAALKSD 252 (365)
T ss_pred EEeCCCEEEEEc---CCCeEEEEecCc--CCcCceeeCHH-HHHHHHhC
Confidence 489999998732 234599999999 56 899999 98888753
No 132
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=69.28 E-value=7.1 Score=34.68 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=39.8
Q ss_pred cccCceEEEEeccc--cceeee----eeCCEEEEeeecCCCcEEEEEeeCCC------cce-eecCHHHH
Q 014974 220 VEIGKMYEVVVTTY--RGFYRY----RLGDIVKVVDFYNSSPQVEFVMRAPK------SSF-EIISERDL 276 (415)
Q Consensus 220 le~G~~YelVvTt~--~GLyRY----riGDvV~V~gf~~~~P~i~F~gR~~~------l~g-Ekl~e~~v 276 (415)
|.+|++-+|.||.. ||-+++ .++|+=-|.+- -.|+|+|.+...+ ..| |||+....
T Consensus 47 Lp~gq~L~v~VtDvDLAG~~~P~~~~~~~dvRvvkdi--~pPRI~l~Y~L~d~~G~vi~~g~e~L~Dm~f 114 (141)
T PF11454_consen 47 LPPGQTLEVTVTDVDLAGDVEPFWGSGANDVRVVKDI--YPPRIELSYTLTDADGKVIKQGEEKLKDMGF 114 (141)
T ss_pred CCCCCEEEEEEEecccCcccccCcCCCCCcEEEEccC--CCCcEEEEEEEECCCCcEEEecceEEecchh
Confidence 77999999999996 997766 55666555555 4799999988652 334 66665544
No 133
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=67.37 E-value=19 Score=27.83 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=38.6
Q ss_pred eecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEee
Q 014974 269 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 318 (415)
Q Consensus 269 Ekl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~ 318 (415)
++-.|+.+++||.+|.+.|+...++++.+..+..+. +.-.||.+-++.+
T Consensus 13 ~~S~edAv~~Av~~A~kTl~ni~~~eV~e~~~~v~d-g~i~~y~v~lkv~ 61 (66)
T PF07311_consen 13 PKSWEDAVQNAVARASKTLRNIRWFEVKEQRGHVED-GKITEYQVNLKVS 61 (66)
T ss_dssp SSHHHHHHHHHHHHHHHHSSSEEEEEEEEEEEEEET-TCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhchhCcEEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 566799999999999998877678888888876655 3457898777654
No 134
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=57.74 E-value=51 Score=33.81 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhCC---CCccccccccCceEE-EeeCCCCCCCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcc
Q 014974 146 SQYCSKIKYYAGE---VPVLGGDYFASECYV-GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 221 (415)
Q Consensus 146 ~~y~~~l~~~~g~---v~~~~~~y~aSEg~i-gi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele 221 (415)
+.+...+++.+|- -.++ ..||.||... .+ + | +.+.+...| . |=.- ++.+ +..|.
T Consensus 242 ~ef~~~l~~~~Gv~~~~~i~-~~ygmtEl~s~~~--~--~--~~~~~~~p~-w-----V~iR-------Dp~t--l~~~~ 299 (365)
T PF04443_consen 242 EEFYARLQEVFGVIPIENIY-DMYGMTELNSQAY--E--C--GHGHFHVPP-W-----VIIR-------DPET--LEPLP 299 (365)
T ss_pred HHHHHHHHHHHCCCCHHHee-eeeeccccchhhe--e--C--CCCcccCCC-e-----EEEE-------CCCC--CcCCC
Confidence 4566778888873 3666 8899999532 22 1 2 112332222 2 1111 1333 45688
Q ss_pred cCceEEEEeccc-----cceeeeeeCCEEEEeeec----CCCcEEEEEeeCCC--cceeecCH
Q 014974 222 IGKMYEVVVTTY-----RGFYRYRLGDIVKVVDFY----NSSPQVEFVMRAPK--SSFEIISE 273 (415)
Q Consensus 222 ~G~~YelVvTt~-----~GLyRYriGDvV~V~gf~----~~~P~i~F~gR~~~--l~gEkl~e 273 (415)
.|+++-|.+=+. -|. =-|.|+-.+.+-. .+.+.|+++||.+. ++|=.++-
T Consensus 300 ~Ge~Gli~vidl~~~s~p~~--IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ae~RGCs~~~ 360 (365)
T PF04443_consen 300 PGETGLIQVIDLANTSYPGF--ILTEDLGVLHGDDDCGCRKGKYFEVLGRADGAEIRGCSLTF 360 (365)
T ss_pred CCCeeEEEEEcccccCCCcE--EEEcceeeecCCCCCCCccCCEEEEEeCCCCCccCCcHHHH
Confidence 999998877554 244 4489999666521 12458999999998 88855443
No 135
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.66 E-value=1.5e+02 Score=24.01 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 014974 273 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 342 (415)
Q Consensus 273 e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L 342 (415)
+..+.+++..+.. .|+.+......+. ...++.|.+|||+... .+ ..+....+.|.+.+
T Consensus 25 pGsL~~vL~~Fa~-----~~INLt~IeSRP~-~~~~~~Y~FfVDieg~-----~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 25 VGALAKVLRLFEE-----KDINLTHIESRPS-RLNKDEYEFFINLDKK-----SA-PALDPIIKSLRNDI 82 (90)
T ss_pred CcHHHHHHHHHHH-----CCCCEEEEEeccC-CCCCceEEEEEEEEcC-----CC-HHHHHHHHHHHHHh
Confidence 4457777777755 6888877776653 3346889999999642 12 34444555555554
No 136
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=42.87 E-value=1.9e+02 Score=23.78 Aligned_cols=90 Identities=12% Similarity=0.231 Sum_probs=51.1
Q ss_pred cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHH----H
Q 014974 266 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLED----A 341 (415)
Q Consensus 266 l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~----~ 341 (415)
+-.+. ..+.+.+.+...+. + .++.+..|++. |-|+.++++.... ..+.++...+.. .
T Consensus 18 ~~~~~-~~~~l~~~l~~~~~---~-~~~~i~~~~vm------~nHvHllv~~~~~--------~~is~~~~~lK~~~s~~ 78 (121)
T PF01797_consen 18 LFNDE-IREALLEILREICE---E-YGIEIIAFVVM------PNHVHLLVSIPPK--------QSISKFMQRLKGRSSRW 78 (121)
T ss_dssp SSSHH-HHHHHHHHHHHHHH---H-TTEEEEEEEEE------TTEEEEEEEE-TT--------S-HHHHHHHHHHHHHHH
T ss_pred eeehh-eeeeeeeccccccc---c-ccceeeeeccc------Ccccceeeeeccc--------ccchheeeccccccccc
Confidence 43444 56667778877776 6 89999999877 6699999988542 123334444433 3
Q ss_pred hChhHHHhhhc----CCC--CCeEEEEcCCChHHHHHHH
Q 014974 342 FGSIYKVQRDR----GEI--SPLSVSIVKPGTFDRLLQV 374 (415)
Q Consensus 342 Ln~~Y~~~R~~----g~l--~p~~v~~v~~Gtf~~~~~~ 374 (415)
+|..|...... |.+ ..--...+....+....++
T Consensus 79 ~~k~~~~~~~~~~~~~~~Wq~~y~~~~i~~~~~~~~~~Y 117 (121)
T PF01797_consen 79 INKEFPELKKRYFWRGHFWQRGYFDRSIRNESLDNVIRY 117 (121)
T ss_dssp HHHHTHHHHHSCCT-TSSBESEEEEEEEBSSBHHHHHHH
T ss_pred ccccccceecccccccccccCCeEEEEECChhHHHHHHH
Confidence 35444333211 222 2344555665566665554
No 137
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=40.91 E-value=19 Score=30.72 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=39.1
Q ss_pred ceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh-Chh
Q 014974 267 SFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSI 345 (415)
Q Consensus 267 ~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~ 345 (415)
.+-.+-+.+|.+++.+.+. . ++. .+..+..--|.+|+|++-.. +-+.+..+...|.+.| ...
T Consensus 20 F~~~vqPvEIa~~L~remd---~--~a~----~~~~~r~~aPN~y~V~Ls~~--------D~~~l~~~~~~l~~el~~~l 82 (116)
T PF12401_consen 20 FRSEVQPVEIAKALRREMD---D--QAR----VVSRGRTLAPNVYTVELSPE--------DYERLSPWGDRLARELADYL 82 (116)
T ss_dssp HTTSS-THHHHHHHHHHHH---H--T-B-------TT--B---EEEEEEEHH--------HHHHH-S-SHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHH---h--CCe----ecCCCCEEcCeeEEEEECHH--------HHHHHhhhHHHHHHHHHHHH
Confidence 3455889999999999877 3 211 11111111377898765221 2223332333444444 333
Q ss_pred HHHhhhcC--CCCCeEEEEcCCCh
Q 014974 346 YKVQRDRG--EISPLSVSIVKPGT 367 (415)
Q Consensus 346 Y~~~R~~g--~l~p~~v~~v~~Gt 367 (415)
.+..++.| ..+|+.|++.....
T Consensus 83 ~~~a~~qgy~~~G~v~V~~~~d~~ 106 (116)
T PF12401_consen 83 AEHAREQGYTFVGPVTVEFEEDPD 106 (116)
T ss_dssp HHHHHHHT-B-SS--EEEEEEETT
T ss_pred HHHHHHCCCeecCCEEEEEEECCC
Confidence 33445555 68999999976543
No 138
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=40.25 E-value=51 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=24.3
Q ss_pred EEEEeccccceeeeeeCCEEEEeeecCCCcEE---EEEee
Q 014974 226 YEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV---EFVMR 262 (415)
Q Consensus 226 YelVvTt~~GLyRYriGDvV~V~gf~~~~P~i---~F~gR 262 (415)
+-......+|+||+|+||-.-+--+......| .|..|
T Consensus 43 ~k~~~~~~~~~~R~RiG~YRlIy~i~d~~~~V~v~~v~~r 82 (90)
T COG2026 43 GKKLRKGLSGKYRLRIGDYRLIYEIDDETLTVLVLKVGHR 82 (90)
T ss_pred ceecccCCCCeEEEEecCEEEEEEEECCceEEEEEEEech
Confidence 34555567899999999966666665555533 45455
No 139
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=38.93 E-value=62 Score=33.72 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=51.8
Q ss_pred cceEeCCC---HHHHHHHHHHHHHH--------HHH---HHHHHHhcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHH
Q 014974 52 IDGIFSPY---AIGLIGAFSFFESK--------WEQ---LCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSI 117 (415)
Q Consensus 52 v~~i~~~f---~~~l~~~~~~le~~--------w~~---l~~dI~~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~ 117 (415)
|+.++..| |.-+++++++..+. ++. +-+.+.+|.+.. +..+.++..+.+.|..|+|..+-++...
T Consensus 121 lr~v~~~f~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~~~~L~~-~~~ERi~~El~kiL~~~~p~~~l~~L~~ 199 (409)
T PRK10885 121 LRHVSPAFAEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVASGELDA-LTPERVWKETERALMERNPQVFFQVLRD 199 (409)
T ss_pred eEeCCchhhhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhchhhh-CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55565555 77888888876664 222 223333455554 6777899999999977888877666666
Q ss_pred hcCCCCCCcccccCCCCc
Q 014974 118 CGESNWSGIFSKLWPNVR 135 (415)
Q Consensus 118 ~~~~g~~g~~~~lWP~L~ 135 (415)
|+ ++..++|.+.
T Consensus 200 ~g------~L~~l~PEl~ 211 (409)
T PRK10885 200 CG------ALAVLLPEID 211 (409)
T ss_pred hh------HHHHHhhHHH
Confidence 62 5777777765
No 140
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=35.65 E-value=25 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=14.9
Q ss_pred cccCceEEEEeccccc--eeeeee
Q 014974 220 VEIGKMYEVVVTTYRG--FYRYRL 241 (415)
Q Consensus 220 le~G~~YelVvTt~~G--LyRYri 241 (415)
--.|++|+++|.+..| +|||--
T Consensus 20 f~sgq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 20 FPSGQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp ESSS--EEEEEE-TT--EEEETTT
T ss_pred eCCCCEEEEEEECCCCCEEEEecC
Confidence 4489999999998888 898863
No 141
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=34.43 E-value=1.2e+02 Score=31.78 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=53.8
Q ss_pred cceEeCCC---HHHHHHHHHHHHH----------HHHHHHHHHH-hcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHH
Q 014974 52 IDGIFSPY---AIGLIGAFSFFES----------KWEQLCDDLE-NGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSI 117 (415)
Q Consensus 52 v~~i~~~f---~~~l~~~~~~le~----------~w~~l~~dI~-~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~ 117 (415)
|+.++..| |.-+++++++..+ .-.+++.... +|.++ .+..+-++..+.+.|..|+|..+-++...
T Consensus 121 lR~v~~~F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~~~~~l~-~~s~ERI~~El~k~L~~~~p~~~~~~L~~ 199 (417)
T PRK13298 121 LRHVSESFIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMVKKHELL-YLTPERIWNETEKALKTDNPHVYFQVLYE 199 (417)
T ss_pred EecCCcccccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHhhhhhhh-cCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555555 7888888887765 2333444333 34444 47778899999999988999988777666
Q ss_pred hcCCCCCCcccccCCCCc
Q 014974 118 CGESNWSGIFSKLWPNVR 135 (415)
Q Consensus 118 ~~~~g~~g~~~~lWP~L~ 135 (415)
| | ++..++|.+.
T Consensus 200 ~---g---~L~~~~PEl~ 211 (417)
T PRK13298 200 C---N---ALKFLFPEID 211 (417)
T ss_pred c---C---CHHHhCcchH
Confidence 6 2 6788888886
No 142
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=34.01 E-value=34 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.737 Sum_probs=14.8
Q ss_pred eeeCCEEEEeeecCCCcEEEEE
Q 014974 239 YRLGDIVKVVDFYNSSPQVEFV 260 (415)
Q Consensus 239 YriGDvV~V~gf~~~~P~i~F~ 260 (415)
|.+||+|+..+ +.|.+-+.
T Consensus 1 f~~GDvV~LKS---GGp~MTV~ 19 (53)
T PF09926_consen 1 FKIGDVVQLKS---GGPRMTVT 19 (53)
T ss_pred CCCCCEEEEcc---CCCCeEEE
Confidence 67899999998 67866444
No 143
>PRK11899 prephenate dehydratase; Provisional
Probab=33.62 E-value=2.4e+02 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeec
Q 014974 273 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 319 (415)
Q Consensus 273 e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~ 319 (415)
+-.+.+++..+.. .|+.|.-....+. .+.++.|.+|+|+.+
T Consensus 205 pGaL~~vL~~Fa~-----~gINLtkIeSRP~-~~~~~~Y~F~id~eg 245 (279)
T PRK11899 205 PAALYKALGGFAT-----NGVNMTKLESYMV-GGSFTATQFYADIEG 245 (279)
T ss_pred CChHHHHHHHHHH-----cCCCeeeEEeeec-CCCCceEEEEEEEEC
Confidence 4567777777765 6888877776653 345899999999975
No 144
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=31.34 E-value=86 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.442 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCc
Q 014974 89 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVR 135 (415)
Q Consensus 89 ~i~~~~~r~~l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~ 135 (415)
.+..+-++..+.+.+..|+|..+-++...+ | ++..++|+++
T Consensus 21 ~is~ERi~~El~kil~~~~~~~~~~~l~~~---g---ll~~ifP~l~ 61 (64)
T PF12627_consen 21 KISKERIREELEKILSSPNPSRAFKLLDEL---G---LLEYIFPELD 61 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTTHHHHHHHHHHT---T---CHHHHSTTHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHc---C---CHHHHCcccc
Confidence 366778899999999889998887776666 2 6888999874
No 145
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.42 E-value=54 Score=28.51 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=24.5
Q ss_pred ecCCcccCceEEEEeccccceeeeeeCCEEEEe
Q 014974 216 DFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 248 (415)
Q Consensus 216 ~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~ 248 (415)
.|++++.|. ++.+++..|-|+|++=++..|.
T Consensus 62 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~ 92 (137)
T cd05830 62 DLDKLRPGD--KIVVETADGWYTYVVRSSEIVL 92 (137)
T ss_pred cHhhCCCCC--EEEEEECCeEEEEEEeEEEEEC
Confidence 466788898 7888889999999987776553
No 146
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=28.62 E-value=78 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.8
Q ss_pred cccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCC
Q 014974 164 GDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFD 203 (415)
Q Consensus 164 ~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~ 203 (415)
-+|--|.|.+++++.+++ -.++.|+...++||+.+
T Consensus 7 i~~~LSng~vqv~FnD~t-----kivl~~~~~~v~yi~~~ 41 (68)
T PF00659_consen 7 IGYQLSNGTVQVNFNDHT-----KIVLSPDGRLVTYIDRD 41 (68)
T ss_dssp EEEEETTSEEEEEETTS------EEEEETTCCEEEEE-TT
T ss_pred EEEEEeCCCEEEEEeCCC-----EEEECCCCCEEEEECCC
Confidence 467779999999987654 45678888899999965
No 147
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=27.59 E-value=68 Score=27.46 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=21.5
Q ss_pred ecCCcccCceEEEEeccccceeeeeeCCEEEEe
Q 014974 216 DFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 248 (415)
Q Consensus 216 ~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~ 248 (415)
.|++|+.|+ ++.+++..+-|+|++-++-.|.
T Consensus 58 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~ 88 (127)
T cd05828 58 FLGELEPGD--IITLQTLGGTYTYRVTSTRIVD 88 (127)
T ss_pred ChhcCCCCC--EEEEEECCEEEEEEEeeEEEEC
Confidence 355677887 4666777778888877775544
No 148
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=25.86 E-value=94 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=10.8
Q ss_pred eecCCcccCceEEEEecc
Q 014974 215 VDFSGVEIGKMYEVVVTT 232 (415)
Q Consensus 215 l~l~ele~G~~YelVvTt 232 (415)
+.+.+++.|+.|+-.|+.
T Consensus 9 ~~~~~~~~G~~~~g~V~~ 26 (77)
T cd04473 9 CTMEDLEVGKLYKGKVNG 26 (77)
T ss_pred cchhhCCCCCEEEEEEEe
Confidence 344556667777666654
No 149
>COG2457 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=1.1e+02 Score=28.63 Aligned_cols=33 Identities=42% Similarity=0.543 Sum_probs=27.9
Q ss_pred CCcccCceEEEEecccc--------ceeeeeeCCEEEEeeecC
Q 014974 218 SGVEIGKMYEVVVTTYR--------GFYRYRLGDIVKVVDFYN 252 (415)
Q Consensus 218 ~ele~G~~YelVvTt~~--------GLyRYriGDvV~V~gf~~ 252 (415)
-..+.|+-||++++|.+ |+++ .||-+++.=|.+
T Consensus 8 f~~~~G~IyEviviT~~~~~N~aPIGIi~--~gd~~~~kLy~G 48 (199)
T COG2457 8 FGPEEGKIYEVIVITRGENPNAAPIGIIV--KGDKLKVKLYKG 48 (199)
T ss_pred hCcccCceEEEEEEecCCCCCcCceEEEE--eCCEEEEEEecC
Confidence 34678999999999987 7887 999999988754
No 150
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=25.19 E-value=85 Score=30.08 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=36.2
Q ss_pred CHHHHHHHHH-HhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCCCccccccccCc
Q 014974 107 QPDLSKRIRS-ICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASE 170 (415)
Q Consensus 107 ~p~~A~~L~~-~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSE 170 (415)
+|+.++.+.. ++.+ -+++. +...| |.-.++|+...++|++.|| +|+.+..-+|-+
T Consensus 154 ~~~~~~~~l~~~~~~-----a~~ed--gAeaI-iLGCAGms~la~~Lq~~~g-vPVIDgv~Aav~ 209 (230)
T COG4126 154 PPEEAEALLVIEAAE-----ALKED--GAEAI-ILGCAGMSDLADQLQKAFG-VPVIDGVAAAVK 209 (230)
T ss_pred ChHHHHHHHHHHHHH-----Hhhhc--CCCEE-EEcCccHHHHHHHHHHHhC-CCcccchHHHHH
Confidence 4666655443 3332 23333 55644 5566689999999999999 999976666633
No 151
>COG5475 Uncharacterized small protein [Function unknown]
Probab=25.13 E-value=77 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=19.4
Q ss_pred eeeCCEEEEeeecCCCcEEEEEeeCC
Q 014974 239 YRLGDIVKVVDFYNSSPQVEFVMRAP 264 (415)
Q Consensus 239 YriGDvV~V~gf~~~~P~i~F~gR~~ 264 (415)
|-+||+|++.. +.|++-+.+=..
T Consensus 5 FstgdvV~lKs---GGP~Mtvs~~ss 27 (60)
T COG5475 5 FSTGDVVTLKS---GGPRMTVSGYSS 27 (60)
T ss_pred eecCcEEEeec---CCceEEEecccc
Confidence 67899999998 799988877665
No 152
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=24.44 E-value=71 Score=27.30 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=23.8
Q ss_pred eecCCcccCceEEEEeccccceeeeeeCCEEEEe
Q 014974 215 VDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 248 (415)
Q Consensus 215 l~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~ 248 (415)
-.|++|+.|.. +.|++..+-|+|++=++-.|.
T Consensus 60 ~~L~~l~~Gd~--v~v~~~~~~~~Y~V~~~~~v~ 91 (126)
T cd06166 60 NRLDEVEKGDE--IKVTTKNGTYKYKITSIFVVE 91 (126)
T ss_pred CChHHCCCCCE--EEEEECCEEEEEEEEEEEEEC
Confidence 36778889974 677888889999886655444
No 153
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=24.40 E-value=71 Score=31.72 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=14.3
Q ss_pred eeeeeeCCEEEEeeecC
Q 014974 236 FYRYRLGDIVKVVDFYN 252 (415)
Q Consensus 236 LyRYriGDvV~V~gf~~ 252 (415)
||||+.|+-|+|+--.|
T Consensus 242 ly~y~~~~~v~i~c~ch 258 (284)
T PF07897_consen 242 LYKYGKGEEVRIVCVCH 258 (284)
T ss_pred EEEecCCCeEEEEEEec
Confidence 99999999888887643
No 154
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=23.76 E-value=2.4e+02 Score=29.08 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred cceEeCCC---HHHHHHHHHHHHHH-----HHH---HHHHH-HhcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHHhc
Q 014974 52 IDGIFSPY---AIGLIGAFSFFESK-----WEQ---LCDDL-ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICG 119 (415)
Q Consensus 52 v~~i~~~f---~~~l~~~~~~le~~-----w~~---l~~dI-~~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~~~ 119 (415)
|+.++..| |.-+++++++..+- .++ +++.+ ..|.+ ..+..+-++..+.+.|..++|..+-++...|+
T Consensus 132 LR~v~~~F~EDPLRILRa~RFaarlg~F~i~~eT~~~~~~~~~~~~l-~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g 210 (364)
T PRK13297 132 LRHVGEAFAEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEA-DALVPERVWKEVSRGLMAQAPSRMLDVLARAG 210 (364)
T ss_pred eeeCccccccCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhhccc-ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 34444444 77778888766552 122 33332 22445 33677889999999998899998888777773
Q ss_pred CCCCCCcccccCCCCceE
Q 014974 120 ESNWSGIFSKLWPNVRYI 137 (415)
Q Consensus 120 ~~g~~g~~~~lWP~L~~i 137 (415)
++..++|.++..
T Consensus 211 ------~L~~l~Pel~~~ 222 (364)
T PRK13297 211 ------ALARVMPELHDD 222 (364)
T ss_pred ------CHHHhCcccccc
Confidence 688899998733
No 155
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=23.65 E-value=83 Score=27.67 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=18.8
Q ss_pred ecCCcccCceEEEEeccc-cceeeeeeCCEEEE
Q 014974 216 DFSGVEIGKMYEVVVTTY-RGFYRYRLGDIVKV 247 (415)
Q Consensus 216 ~l~ele~G~~YelVvTt~-~GLyRYriGDvV~V 247 (415)
.|++|+.|. +|.||+. +.-|+|++-++..|
T Consensus 69 ~L~~l~~GD--~I~v~~~~g~~~~Y~V~~~~~v 99 (144)
T cd05829 69 RLGDLRKGD--KVEVTRADGQTATFRVDRVEVY 99 (144)
T ss_pred chhcCCCCC--EEEEEECCCCEEEEEEeEEEEE
Confidence 456677887 4555664 34788877666333
No 156
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=23.65 E-value=4.2e+02 Score=26.27 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=44.5
Q ss_pred EeeecCCCcEEEEEeeC-CC-----------cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEE
Q 014974 247 VVDFYNSSPQVEFVMRA-PK-----------SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIF 314 (415)
Q Consensus 247 V~gf~~~~P~i~F~gR~-~~-----------l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~ 314 (415)
|.+..++.-||-.++|. .. +....--+-.+.+++..++. .|+.+.-.-+. +..+.++.|.+|
T Consensus 167 I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~-----~gINlTkIESR-P~k~~~~~Y~F~ 240 (279)
T COG0077 167 IEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAK-----RGINLTKIESR-PLKTGLGEYLFF 240 (279)
T ss_pred ccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHH-----cCcceeeEeec-ccCCCCeeEEEE
Confidence 66677788888888873 21 22222345667777776644 67766655545 344558999999
Q ss_pred EEeecC
Q 014974 315 VEIREG 320 (415)
Q Consensus 315 vE~~~~ 320 (415)
+|+.+.
T Consensus 241 iD~eg~ 246 (279)
T COG0077 241 IDIEGH 246 (279)
T ss_pred EEEecC
Confidence 999753
No 157
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=23.59 E-value=1.5e+02 Score=26.08 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEecccc--ce
Q 014974 159 VPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR--GF 236 (415)
Q Consensus 159 v~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~--GL 236 (415)
+.++ ..-+++...+.+.++.+ .+.+++.++.+.+ |... +.+. +-+|++|.++|+... |-
T Consensus 70 ~rlR-liNa~~~~~~~~~i~gh-----~~~Via~DG~~v~--p~~~--------~~l~---l~~G~R~dvlv~~~~~~g~ 130 (159)
T PF00394_consen 70 YRLR-LINAGASTSFNFSIDGH-----PMTVIAADGVPVE--PYKV--------DTLV---LAPGQRYDVLVTADQPPGN 130 (159)
T ss_dssp EEEE-EEEESSS-BEEEEETTB-----CEEEEEETTEEEE--EEEE--------SBEE---E-TTEEEEEEEEECSCSSE
T ss_pred EEEE-EEeccCCeeEEEEeecc-----ceeEeeecccccc--cccc--------ceEE---eeCCeEEEEEEEeCCCCCe
Confidence 4443 44555555555555433 4788888888888 5432 2333 679999999999874 77
Q ss_pred eeeee
Q 014974 237 YRYRL 241 (415)
Q Consensus 237 yRYri 241 (415)
|..+.
T Consensus 131 y~i~~ 135 (159)
T PF00394_consen 131 YWIRA 135 (159)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76655
No 158
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=22.27 E-value=71 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=23.6
Q ss_pred cCCcccCceEEEEeccccceeeeeeCCEEEE
Q 014974 217 FSGVEIGKMYEVVVTTYRGFYRYRLGDIVKV 247 (415)
Q Consensus 217 l~ele~G~~YelVvTt~~GLyRYriGDvV~V 247 (415)
..+++.|++--|.+.... .+..||++++
T Consensus 57 v~~a~~G~ecgi~l~~~~---d~~~Gdvi~~ 84 (84)
T cd03692 57 VKEVKKGYECGITLENFN---DIKVGDIIEA 84 (84)
T ss_pred cCEECCCCEEEEEEeCcc---cCCCCCEEEC
Confidence 457889999999998877 7788999975
No 159
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.18 E-value=3.4e+02 Score=20.31 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeec
Q 014974 275 DLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 319 (415)
Q Consensus 275 ~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~ 319 (415)
.+.+++.-+.. .|+.+..-...+. ...++.|.+|+|+..
T Consensus 12 ~L~~vL~~f~~-----~~vni~~I~Srp~-~~~~~~~~f~id~~~ 50 (75)
T cd04880 12 ALAKALKVFAE-----RGINLTKIESRPS-RKGLWEYEFFVDFEG 50 (75)
T ss_pred HHHHHHHHHHH-----CCCCEEEEEeeec-CCCCceEEEEEEEEC
Confidence 35555555544 6888877765543 334788999999974
No 160
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=21.58 E-value=88 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=19.7
Q ss_pred ecCCcccCceEEEEeccccceeeeeeCCE
Q 014974 216 DFSGVEIGKMYEVVVTTYRGFYRYRLGDI 244 (415)
Q Consensus 216 ~l~ele~G~~YelVvTt~~GLyRYriGDv 244 (415)
.|.+++.|+. +.+++..+-|+|++=++
T Consensus 60 ~L~~l~~GD~--i~v~~~~~~~~Y~V~~~ 86 (136)
T TIGR01076 60 NLDKLKKGDM--LYLHVGNEVLTYQVTST 86 (136)
T ss_pred CHHHCCCCCE--EEEEECCcEEEEEEEEE
Confidence 4566888885 56678888999987444
No 161
>COG3764 SrtA Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]
Probab=20.19 E-value=83 Score=29.85 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=27.8
Q ss_pred eeecCCcccCceEEEEeccccceeeeeeCCEEEEee
Q 014974 214 TVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVD 249 (415)
Q Consensus 214 ~l~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~g 249 (415)
--.|.+||.|. .+++++.++.|+|++-|+..|.-
T Consensus 129 F~~L~~lk~GD--~iyv~~~~~~~~Y~v~~~~~V~p 162 (210)
T COG3764 129 FRPLGKLKVGD--KIYVTTKNETYVYKVTDISIVDP 162 (210)
T ss_pred ccchhhhcCCC--EEEEEeCCcEEEEEEEEEEEeCc
Confidence 34678899998 58899999999999988776654
No 162
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=20.12 E-value=87 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.1
Q ss_pred eeeeCCEEEEeeec
Q 014974 238 RYRLGDIVKVVDFY 251 (415)
Q Consensus 238 RYriGDvV~V~gf~ 251 (415)
-...||.|+|+|..
T Consensus 44 ~~~~Gd~V~vtG~v 57 (78)
T cd04486 44 DVAVGDLVRVTGTV 57 (78)
T ss_pred CCCCCCEEEEEEEE
Confidence 34779999999964
Done!