Query 014977
Match_columns 415
No_of_seqs 772 out of 2364
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111 Uncharacterized conser 100.0 1.7E-43 3.6E-48 297.8 36.1 331 46-408 7-342 (346)
2 KOG0271 Notchless-like WD40 re 100.0 5.3E-42 1.1E-46 294.7 27.3 278 39-386 110-479 (480)
3 KOG2110 Uncharacterized conser 100.0 9.8E-38 2.1E-42 267.9 37.2 339 43-407 4-349 (391)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.2E-37 1.1E-41 267.2 22.0 256 34-302 165-429 (459)
5 KOG0279 G protein beta subunit 100.0 1.7E-34 3.7E-39 239.2 32.5 292 38-388 9-313 (315)
6 KOG0286 G-protein beta subunit 100.0 2.3E-34 5.1E-39 239.7 31.0 285 36-386 47-343 (343)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-36 4E-41 263.8 17.1 242 35-289 208-458 (459)
8 KOG0271 Notchless-like WD40 re 100.0 5.6E-35 1.2E-39 251.6 20.6 242 38-289 151-479 (480)
9 KOG0315 G-protein beta subunit 100.0 7.1E-34 1.5E-38 231.8 24.6 250 43-302 39-299 (311)
10 KOG0273 Beta-transducin family 100.0 1E-32 2.2E-37 243.5 30.0 276 41-387 232-522 (524)
11 KOG0295 WD40 repeat-containing 100.0 1.9E-33 4.1E-38 240.8 24.3 283 35-386 99-404 (406)
12 KOG0291 WD40-repeat-containing 100.0 2.9E-31 6.2E-36 246.5 32.1 300 41-389 304-613 (893)
13 KOG0263 Transcription initiati 100.0 8.7E-32 1.9E-36 251.9 28.1 244 42-296 376-654 (707)
14 KOG0265 U5 snRNP-specific prot 100.0 2.1E-31 4.6E-36 223.0 27.4 281 38-387 41-337 (338)
15 cd00200 WD40 WD40 domain, foun 100.0 5.1E-30 1.1E-34 230.8 34.8 278 40-386 5-289 (289)
16 KOG0279 G protein beta subunit 100.0 1.5E-30 3.2E-35 215.8 26.5 248 31-292 51-314 (315)
17 KOG0318 WD40 repeat stress pro 100.0 6.6E-30 1.4E-34 228.7 32.4 285 39-388 185-602 (603)
18 KOG0286 G-protein beta subunit 100.0 6.4E-30 1.4E-34 213.3 27.5 237 41-289 94-343 (343)
19 KOG1407 WD40 repeat protein [F 100.0 1.6E-30 3.5E-35 213.6 23.3 247 38-296 14-266 (313)
20 KOG0285 Pleiotropic regulator 100.0 2.7E-30 5.8E-35 221.0 25.5 291 37-390 144-441 (460)
21 KOG0266 WD40 repeat-containing 100.0 9.4E-30 2E-34 243.2 31.9 247 42-297 157-415 (456)
22 KOG0645 WD40 repeat protein [G 100.0 3.2E-29 6.9E-34 207.1 30.4 286 37-388 7-311 (312)
23 KOG0292 Vesicle coat complex C 100.0 5E-30 1.1E-34 241.9 26.8 293 42-403 7-336 (1202)
24 KOG0273 Beta-transducin family 100.0 4.5E-30 9.7E-35 226.9 24.2 280 41-389 175-483 (524)
25 PLN00181 protein SPA1-RELATED; 100.0 9.8E-29 2.1E-33 253.0 37.1 241 40-294 479-741 (793)
26 KOG0315 G-protein beta subunit 100.0 5.7E-29 1.2E-33 203.2 27.1 263 57-389 11-289 (311)
27 KOG0284 Polyadenylation factor 100.0 5.9E-31 1.3E-35 228.6 16.4 239 42-294 94-340 (464)
28 KOG0282 mRNA splicing factor [ 100.0 7.5E-31 1.6E-35 232.6 16.6 283 38-386 208-503 (503)
29 KOG0291 WD40-repeat-containing 100.0 1.2E-28 2.5E-33 229.3 31.7 246 39-296 345-617 (893)
30 KOG0295 WD40 repeat-containing 100.0 7.3E-30 1.6E-34 218.9 21.4 244 37-290 143-405 (406)
31 KOG0318 WD40 repeat stress pro 100.0 3.9E-28 8.4E-33 217.4 33.1 287 3-296 12-355 (603)
32 KOG0316 Conserved WD40 repeat- 100.0 7.9E-29 1.7E-33 200.8 25.5 245 37-295 10-261 (307)
33 KOG0276 Vesicle coat complex C 100.0 5.4E-29 1.2E-33 227.0 25.6 245 40-296 9-262 (794)
34 KOG0293 WD40 repeat-containing 100.0 3.6E-29 7.7E-34 217.8 20.9 290 35-389 215-514 (519)
35 KOG0296 Angio-associated migra 100.0 2.2E-28 4.8E-33 209.9 25.2 245 36-291 98-398 (399)
36 KOG0263 Transcription initiati 100.0 8.6E-29 1.9E-33 231.9 24.5 244 81-391 372-652 (707)
37 KOG0284 Polyadenylation factor 100.0 3.3E-30 7.2E-35 224.0 13.8 242 39-293 133-382 (464)
38 KOG0281 Beta-TrCP (transducin 100.0 1.4E-29 3E-34 215.9 14.3 245 29-296 182-433 (499)
39 KOG0643 Translation initiation 100.0 3.6E-27 7.9E-32 194.6 27.4 293 39-389 5-318 (327)
40 KOG0296 Angio-associated migra 100.0 4E-27 8.7E-32 202.2 26.6 279 39-388 59-398 (399)
41 KOG0266 WD40 repeat-containing 100.0 2.3E-27 5.1E-32 226.7 27.0 246 36-291 195-454 (456)
42 KOG0772 Uncharacterized conser 100.0 9.9E-28 2.1E-32 214.3 22.1 284 39-389 162-487 (641)
43 KOG0319 WD40-repeat-containing 100.0 2.6E-27 5.7E-32 220.0 25.3 281 38-388 317-619 (775)
44 KOG1446 Histone H3 (Lys4) meth 100.0 4.8E-25 1E-29 186.6 33.8 246 40-296 10-267 (311)
45 KOG0265 U5 snRNP-specific prot 100.0 1E-26 2.2E-31 194.9 22.6 238 40-290 86-337 (338)
46 cd00200 WD40 WD40 domain, foun 100.0 8E-26 1.7E-30 203.4 29.8 239 38-289 45-289 (289)
47 KOG0283 WD40 repeat-containing 100.0 6.5E-27 1.4E-31 221.1 23.1 241 42-293 265-578 (712)
48 KOG0276 Vesicle coat complex C 100.0 3.4E-26 7.3E-31 208.9 25.5 241 41-293 52-300 (794)
49 KOG0319 WD40-repeat-containing 100.0 6.6E-27 1.4E-31 217.3 21.1 245 38-293 359-621 (775)
50 KOG0645 WD40 repeat protein [G 100.0 5E-26 1.1E-30 188.3 23.9 237 40-291 57-311 (312)
51 KOG0292 Vesicle coat complex C 100.0 1.2E-25 2.6E-30 212.6 29.1 244 37-294 44-324 (1202)
52 KOG0285 Pleiotropic regulator 100.0 4.2E-26 9.2E-31 195.4 23.2 202 83-296 147-353 (460)
53 KOG0306 WD40-repeat-containing 100.0 7.4E-26 1.6E-30 210.7 26.4 283 38-389 367-665 (888)
54 KOG0316 Conserved WD40 repeat- 99.9 6.7E-26 1.5E-30 183.9 21.9 238 83-389 13-258 (307)
55 KOG0313 Microtubule binding pr 99.9 2.1E-25 4.5E-30 192.6 25.2 286 31-389 92-419 (423)
56 KOG0282 mRNA splicing factor [ 99.9 2.2E-27 4.9E-32 210.6 13.3 240 37-289 251-503 (503)
57 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.5E-30 207.8 24.9 277 38-390 8-290 (745)
58 KOG0310 Conserved WD40 repeat- 99.9 2E-25 4.3E-30 198.6 23.8 243 40-295 22-272 (487)
59 PLN00181 protein SPA1-RELATED; 99.9 1.3E-24 2.8E-29 222.8 32.6 236 43-290 531-792 (793)
60 KOG0973 Histone transcription 99.9 2.9E-25 6.4E-30 215.1 25.6 289 43-397 12-364 (942)
61 KOG0973 Histone transcription 99.9 2.3E-25 4.9E-30 215.9 24.7 257 37-300 62-364 (942)
62 KOG0293 WD40 repeat-containing 99.9 4.9E-26 1.1E-30 198.4 17.5 243 37-293 262-515 (519)
63 KOG0275 Conserved WD40 repeat- 99.9 3.7E-26 8E-31 193.5 16.1 248 40-297 209-473 (508)
64 KOG0274 Cdc4 and related F-box 99.9 7.2E-25 1.5E-29 209.3 26.6 237 43-298 207-448 (537)
65 KOG0288 WD40 repeat protein Ti 99.9 4.6E-26 9.9E-31 198.6 16.1 247 38-297 169-423 (459)
66 KOG0305 Anaphase promoting com 99.9 6.9E-25 1.5E-29 202.2 23.6 241 43-294 216-464 (484)
67 KOG0278 Serine/threonine kinas 99.9 2E-25 4.3E-30 182.7 16.6 285 39-393 9-302 (334)
68 KOG1407 WD40 repeat protein [F 99.9 4.8E-24 1E-28 175.7 23.8 238 39-291 59-311 (313)
69 KOG0289 mRNA splicing factor [ 99.9 7.9E-24 1.7E-28 185.8 26.5 236 44-289 219-460 (506)
70 KOG0281 Beta-TrCP (transducin 99.9 1.2E-25 2.7E-30 191.9 14.2 234 38-296 231-482 (499)
71 KOG0268 Sof1-like rRNA process 99.9 2.4E-25 5.3E-30 191.1 15.6 292 27-389 49-346 (433)
72 KOG0313 Microtubule binding pr 99.9 3.9E-24 8.4E-29 184.8 22.6 242 37-291 137-418 (423)
73 KOG0277 Peroxisomal targeting 99.9 4.4E-24 9.4E-29 175.3 21.3 236 48-294 12-268 (311)
74 PTZ00421 coronin; Provisional 99.9 2.1E-23 4.5E-28 199.0 29.3 226 39-272 70-314 (493)
75 KOG0278 Serine/threonine kinas 99.9 2.3E-25 5E-30 182.3 13.1 242 39-296 54-302 (334)
76 KOG0275 Conserved WD40 repeat- 99.9 2E-25 4.2E-30 189.1 12.9 240 40-289 259-507 (508)
77 KOG0647 mRNA export protein (c 99.9 2.4E-23 5.2E-28 175.0 25.2 247 39-297 22-287 (347)
78 KOG0640 mRNA cleavage stimulat 99.9 3.7E-24 8.1E-29 180.4 19.7 247 38-291 106-426 (430)
79 KOG0641 WD40 repeat protein [G 99.9 8.7E-22 1.9E-26 159.2 32.5 282 42-388 30-349 (350)
80 KOG0294 WD40 repeat-containing 99.9 1.6E-23 3.5E-28 177.0 23.4 240 39-296 38-286 (362)
81 KOG0305 Anaphase promoting com 99.9 2.7E-23 5.9E-28 191.7 27.1 277 48-395 181-468 (484)
82 PTZ00421 coronin; Provisional 99.9 8.1E-23 1.8E-27 195.0 30.0 244 42-295 18-294 (493)
83 KOG0306 WD40-repeat-containing 99.9 6.7E-24 1.4E-28 197.7 21.2 235 45-292 413-665 (888)
84 KOG0277 Peroxisomal targeting 99.9 5.2E-24 1.1E-28 174.8 17.9 238 42-290 58-308 (311)
85 KOG0274 Cdc4 and related F-box 99.9 7.7E-23 1.7E-27 195.5 28.7 242 39-299 244-490 (537)
86 KOG0283 WD40 repeat-containing 99.9 2.2E-23 4.9E-28 197.3 24.4 244 85-391 265-579 (712)
87 PTZ00420 coronin; Provisional 99.9 2.1E-22 4.6E-27 193.1 29.7 229 38-273 68-318 (568)
88 KOG0310 Conserved WD40 repeat- 99.9 6.2E-23 1.3E-27 182.8 23.3 241 40-296 64-314 (487)
89 KOG0299 U3 snoRNP-associated p 99.9 1.7E-22 3.7E-27 178.8 25.3 249 37-295 135-414 (479)
90 KOG0288 WD40 repeat protein Ti 99.9 2.1E-23 4.5E-28 182.1 18.3 240 38-289 213-459 (459)
91 KOG0308 Conserved WD40 repeat- 99.9 1.6E-23 3.5E-28 192.3 17.7 244 42-294 19-288 (735)
92 KOG4283 Transcription-coupled 99.9 2.7E-22 5.8E-27 168.1 22.8 290 35-389 34-366 (397)
93 KOG2096 WD40 repeat protein [G 99.9 4.4E-22 9.5E-27 168.6 24.0 285 37-389 79-403 (420)
94 KOG1408 WD40 repeat protein [F 99.9 2.4E-22 5.3E-27 186.4 24.1 285 42-389 367-714 (1080)
95 KOG2055 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 177.8 23.0 281 38-387 207-511 (514)
96 PTZ00420 coronin; Provisional 99.9 2E-21 4.3E-26 186.5 30.9 219 64-294 53-296 (568)
97 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 186.0 29.0 242 41-294 10-265 (933)
98 KOG0639 Transducin-like enhanc 99.9 1.4E-22 3.1E-27 180.9 20.3 243 41-295 416-667 (705)
99 KOG1036 Mitotic spindle checkp 99.9 3.3E-21 7.1E-26 162.7 27.3 242 40-297 9-268 (323)
100 KOG0300 WD40 repeat-containing 99.9 5E-22 1.1E-26 168.1 21.9 286 37-389 141-477 (481)
101 KOG1332 Vesicle coat complex C 99.9 1.2E-22 2.7E-27 165.9 17.0 246 38-292 5-287 (299)
102 KOG0264 Nucleosome remodeling 99.9 2.6E-22 5.6E-27 177.5 20.1 245 39-293 119-406 (422)
103 KOG0772 Uncharacterized conser 99.9 3.3E-22 7.2E-27 179.2 20.7 206 82-296 162-399 (641)
104 KOG1446 Histone H3 (Lys4) meth 99.9 2.5E-20 5.4E-25 158.1 29.6 202 83-295 10-221 (311)
105 KOG0643 Translation initiation 99.9 1.7E-21 3.6E-26 161.3 21.8 224 83-322 6-246 (327)
106 KOG0641 WD40 repeat protein [G 99.9 2E-20 4.4E-25 151.3 27.0 245 38-291 83-349 (350)
107 KOG0639 Transducin-like enhanc 99.9 2.2E-22 4.9E-27 179.7 17.1 236 42-290 463-703 (705)
108 KOG0268 Sof1-like rRNA process 99.9 1.4E-22 3E-27 174.3 14.5 247 38-302 103-356 (433)
109 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4.1E-26 164.2 21.0 252 15-281 25-294 (323)
110 KOG0289 mRNA splicing factor [ 99.9 5.3E-21 1.1E-25 168.2 23.1 241 37-290 254-505 (506)
111 KOG0269 WD40 repeat-containing 99.9 6.6E-22 1.4E-26 185.2 17.8 241 43-294 38-299 (839)
112 KOG1273 WD40 repeat protein [G 99.9 4.5E-21 9.8E-26 162.2 20.9 238 47-294 26-283 (405)
113 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-19 3.9E-24 164.3 33.0 226 57-294 2-240 (300)
114 KOG2048 WD40 repeat protein [G 99.9 7.8E-20 1.7E-24 169.1 29.8 241 43-295 24-279 (691)
115 KOG0640 mRNA cleavage stimulat 99.9 3.6E-21 7.8E-26 162.5 18.6 208 83-297 108-341 (430)
116 KOG2445 Nuclear pore complex c 99.9 3.4E-20 7.4E-25 156.5 22.5 243 39-291 8-318 (361)
117 KOG0647 mRNA export protein (c 99.9 3.1E-20 6.8E-25 156.3 21.8 229 37-279 65-311 (347)
118 KOG2055 WD40 repeat protein [G 99.9 1E-20 2.2E-25 167.7 19.2 241 43-291 256-512 (514)
119 KOG2106 Uncharacterized conser 99.9 2.4E-18 5.1E-23 154.3 34.2 273 43-389 199-478 (626)
120 KOG0308 Conserved WD40 repeat- 99.9 3.2E-21 7E-26 177.4 16.4 275 8-293 37-329 (735)
121 KOG0294 WD40 repeat-containing 99.9 3E-19 6.5E-24 151.3 26.8 223 58-296 3-242 (362)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5E-19 1.1E-23 161.4 30.7 237 45-296 31-284 (300)
123 KOG2919 Guanine nucleotide-bin 99.9 9.3E-20 2E-24 154.9 23.2 243 44-294 49-330 (406)
124 KOG0299 U3 snoRNP-associated p 99.9 4E-20 8.7E-25 163.9 21.5 235 41-291 199-456 (479)
125 KOG0646 WD40 repeat protein [G 99.9 2.3E-20 5E-25 165.7 18.4 218 43-274 80-332 (476)
126 KOG2096 WD40 repeat protein [G 99.9 1.8E-19 4E-24 152.8 22.8 202 83-293 82-310 (420)
127 KOG0646 WD40 repeat protein [G 99.9 5E-20 1.1E-24 163.6 19.9 235 57-300 51-316 (476)
128 KOG2106 Uncharacterized conser 99.9 1.3E-18 2.9E-23 155.9 28.7 228 44-288 246-518 (626)
129 KOG1063 RNA polymerase II elon 99.9 3.1E-19 6.7E-24 165.5 25.4 291 38-390 261-650 (764)
130 KOG1408 WD40 repeat protein [F 99.9 3.1E-20 6.6E-25 172.6 18.5 241 40-292 455-714 (1080)
131 KOG0301 Phospholipase A2-activ 99.9 9.4E-20 2E-24 169.0 21.6 234 40-295 53-292 (745)
132 KOG2048 WD40 repeat protein [G 99.9 2.1E-18 4.6E-23 159.7 30.3 145 40-191 106-262 (691)
133 KOG1539 WD repeat protein [Gen 99.9 1.1E-18 2.3E-23 165.2 28.4 246 38-296 196-611 (910)
134 KOG0267 Microtubule severing p 99.9 1.5E-21 3.3E-26 181.5 9.2 218 58-294 6-229 (825)
135 KOG1332 Vesicle coat complex C 99.9 6.5E-20 1.4E-24 150.1 17.3 249 85-397 9-293 (299)
136 KOG0267 Microtubule severing p 99.8 6.2E-21 1.3E-25 177.5 10.4 236 35-283 19-260 (825)
137 KOG4378 Nuclear protein COP1 [ 99.8 4.5E-19 9.8E-24 158.6 21.1 238 47-296 37-285 (673)
138 KOG0264 Nucleosome remodeling 99.8 8.8E-19 1.9E-23 155.3 22.7 202 85-296 122-352 (422)
139 KOG0302 Ribosome Assembly prot 99.8 7E-19 1.5E-23 152.4 21.5 219 39-295 146-382 (440)
140 KOG0650 WD40 repeat nucleolar 99.8 8.9E-19 1.9E-23 160.0 22.8 251 30-290 386-679 (733)
141 KOG4328 WD40 protein [Function 99.8 1.1E-18 2.5E-23 154.6 20.7 249 38-294 180-453 (498)
142 KOG1274 WD40 repeat protein [G 99.8 2.9E-18 6.2E-23 164.0 24.4 241 85-388 11-262 (933)
143 KOG4283 Transcription-coupled 99.8 6.6E-18 1.4E-22 142.0 23.3 204 86-296 42-281 (397)
144 KOG1538 Uncharacterized conser 99.8 3.1E-18 6.7E-23 158.3 22.1 270 46-389 14-294 (1081)
145 KOG0270 WD40 repeat-containing 99.8 1.8E-18 3.8E-23 152.9 19.6 233 56-296 192-454 (463)
146 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 4.9E-23 149.3 17.8 205 132-392 150-382 (440)
147 KOG0307 Vesicle coat complex C 99.8 2.6E-19 5.6E-24 175.0 12.3 244 43-295 63-331 (1049)
148 KOG0321 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 154.1 22.0 281 48-389 53-392 (720)
149 KOG1539 WD repeat protein [Gen 99.8 1.4E-17 3.1E-22 157.7 21.5 235 45-292 396-649 (910)
150 KOG0307 Vesicle coat complex C 99.8 5.8E-19 1.3E-23 172.6 12.3 278 48-389 10-328 (1049)
151 KOG1034 Transcriptional repres 99.8 2.6E-17 5.6E-22 140.4 20.1 245 39-296 33-342 (385)
152 KOG0321 WD40 repeat-containing 99.8 1E-17 2.2E-22 154.2 18.6 249 39-296 95-396 (720)
153 KOG0269 WD40 repeat-containing 99.8 4.3E-18 9.3E-23 159.9 15.4 157 135-296 89-255 (839)
154 KOG0300 WD40 repeat-containing 99.8 1.6E-17 3.5E-22 141.0 16.6 242 79-392 140-390 (481)
155 KOG4227 WD40 repeat protein [G 99.8 1.8E-16 3.9E-21 138.2 22.8 307 38-388 50-387 (609)
156 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-17 3.9E-22 148.4 16.8 214 48-273 83-305 (673)
157 KOG1063 RNA polymerase II elon 99.8 1.2E-16 2.5E-21 148.7 22.3 246 38-292 355-700 (764)
158 KOG1007 WD repeat protein TSSC 99.8 6.8E-17 1.5E-21 135.6 18.8 242 40-293 59-363 (370)
159 KOG0322 G-protein beta subunit 99.8 2.7E-17 5.9E-22 136.3 16.2 237 40-290 10-322 (323)
160 KOG1445 Tumor-specific antigen 99.8 1.8E-17 3.9E-22 152.5 16.4 100 194-296 647-755 (1012)
161 KOG1273 WD40 repeat protein [G 99.8 8.7E-17 1.9E-21 136.5 18.6 193 90-292 26-227 (405)
162 KOG1009 Chromatin assembly com 99.8 2E-16 4.4E-21 138.6 20.9 252 37-296 58-377 (434)
163 PRK11028 6-phosphogluconolacto 99.7 1.7E-14 3.8E-19 133.4 32.8 221 64-294 11-261 (330)
164 KOG2445 Nuclear pore complex c 99.7 2.2E-15 4.7E-20 127.7 24.0 200 85-294 11-259 (361)
165 KOG1538 Uncharacterized conser 99.7 1E-16 2.2E-21 148.4 17.3 241 36-293 45-295 (1081)
166 KOG0270 WD40 repeat-containing 99.7 1.9E-15 4E-20 134.0 23.4 236 47-296 128-409 (463)
167 COG2319 FOG: WD40 repeat [Gene 99.7 6.5E-14 1.4E-18 133.0 36.2 246 39-296 60-319 (466)
168 PRK11028 6-phosphogluconolacto 99.7 5.5E-15 1.2E-19 136.7 27.7 240 43-292 33-305 (330)
169 KOG0650 WD40 repeat nucleolar 99.7 4.4E-16 9.5E-21 142.7 16.7 206 79-295 392-641 (733)
170 KOG1009 Chromatin assembly com 99.7 1.3E-14 2.7E-19 127.4 24.3 285 43-393 12-377 (434)
171 KOG1034 Transcriptional repres 99.7 2.8E-15 6.2E-20 128.1 19.1 238 41-291 86-383 (385)
172 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-16 6.6E-21 142.8 13.8 249 40-297 290-567 (577)
173 KOG0290 Conserved WD40 repeat- 99.7 4.7E-15 1E-19 124.8 19.1 237 41-288 93-362 (364)
174 KOG1963 WD40 repeat protein [G 99.7 6.2E-14 1.3E-18 134.3 28.4 296 40-389 201-539 (792)
175 KOG0290 Conserved WD40 repeat- 99.7 3.3E-14 7.1E-19 119.7 21.6 239 44-295 44-322 (364)
176 KOG0771 Prolactin regulatory e 99.7 2.2E-15 4.8E-20 133.0 15.2 198 91-295 148-358 (398)
177 KOG0303 Actin-binding protein 99.7 1.2E-14 2.5E-19 127.2 19.3 226 38-272 75-320 (472)
178 KOG0644 Uncharacterized conser 99.7 4.8E-16 1E-20 147.4 11.6 290 38-403 184-481 (1113)
179 KOG1524 WD40 repeat-containing 99.7 6.9E-15 1.5E-19 133.3 18.3 264 40-389 10-287 (737)
180 KOG1272 WD40-repeat-containing 99.7 4.2E-16 9E-21 138.8 10.2 225 46-289 131-360 (545)
181 KOG1587 Cytoplasmic dynein int 99.7 1.6E-14 3.4E-19 137.7 21.5 222 65-296 222-477 (555)
182 KOG1007 WD repeat protein TSSC 99.7 7.9E-15 1.7E-19 123.3 17.0 197 42-247 121-361 (370)
183 KOG1517 Guanine nucleotide bin 99.7 3.4E-14 7.5E-19 138.2 23.5 286 45-389 1065-1382(1387)
184 KOG4328 WD40 protein [Function 99.7 6.8E-15 1.5E-19 130.9 17.0 243 38-291 228-495 (498)
185 KOG1524 WD40 repeat-containing 99.6 5.3E-15 1.1E-19 134.0 15.6 203 58-288 77-283 (737)
186 KOG0303 Actin-binding protein 99.6 2.1E-14 4.6E-19 125.6 18.6 221 168-411 77-313 (472)
187 KOG1188 WD40 repeat protein [G 99.6 9E-15 2E-19 125.7 15.7 225 57-292 41-347 (376)
188 KOG2919 Guanine nucleotide-bin 99.6 9.5E-15 2.1E-19 124.7 15.5 236 44-293 104-369 (406)
189 KOG1963 WD40 repeat protein [G 99.6 2.4E-13 5.2E-18 130.4 26.8 235 47-295 19-326 (792)
190 COG2319 FOG: WD40 repeat [Gene 99.6 4.1E-12 8.9E-17 120.6 35.7 238 45-294 110-362 (466)
191 KOG0649 WD40 repeat protein [G 99.6 4.5E-13 9.7E-18 110.3 23.7 227 46-292 12-275 (325)
192 KOG2321 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 126.1 22.7 295 39-408 46-359 (703)
193 KOG4497 Uncharacterized conser 99.6 5.2E-14 1.1E-18 120.5 18.5 236 49-295 13-354 (447)
194 KOG0322 G-protein beta subunit 99.6 1.6E-14 3.5E-19 120.0 14.8 240 83-387 10-322 (323)
195 KOG1272 WD40-repeat-containing 99.6 2.6E-15 5.6E-20 133.8 9.9 197 87-296 129-328 (545)
196 KOG1188 WD40 repeat protein [G 99.6 3.6E-14 7.7E-19 122.1 15.3 184 150-389 48-243 (376)
197 PRK01742 tolB translocation pr 99.6 1.4E-13 3E-18 131.5 20.3 215 39-272 198-426 (429)
198 PRK01742 tolB translocation pr 99.6 6.4E-13 1.4E-17 127.0 24.2 169 114-295 184-365 (429)
199 KOG1523 Actin-related protein 99.6 2.9E-13 6.3E-18 115.6 19.1 199 85-294 8-239 (361)
200 KOG0649 WD40 repeat protein [G 99.6 2.3E-12 5E-17 106.1 23.5 234 39-289 57-314 (325)
201 KOG2394 WD40 protein DMR-N9 [G 99.6 3.6E-13 7.8E-18 122.4 19.7 227 46-296 125-367 (636)
202 KOG0771 Prolactin regulatory e 99.6 7.7E-14 1.7E-18 123.3 13.8 190 48-247 148-354 (398)
203 KOG1334 WD40 repeat protein [G 99.6 7.3E-14 1.6E-18 125.4 13.6 253 36-295 134-428 (559)
204 KOG2110 Uncharacterized conser 99.6 4.3E-11 9.2E-16 104.4 30.0 231 47-295 49-334 (391)
205 KOG1240 Protein kinase contain 99.5 3.6E-12 7.9E-17 126.2 25.9 254 36-296 1040-1339(1431)
206 PRK03629 tolB translocation pr 99.5 2.8E-12 6E-17 122.4 23.7 214 66-292 180-407 (429)
207 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.3E-17 110.7 18.3 149 137-293 9-181 (194)
208 PRK04922 tolB translocation pr 99.5 7.9E-12 1.7E-16 119.7 26.0 175 114-294 184-371 (433)
209 KOG1587 Cytoplasmic dynein int 99.5 1.4E-12 3.1E-17 124.4 19.9 242 42-294 240-519 (555)
210 PRK04922 tolB translocation pr 99.5 3E-12 6.5E-17 122.6 22.3 214 66-292 185-412 (433)
211 KOG1523 Actin-related protein 99.5 2.6E-12 5.7E-17 109.9 19.1 229 44-282 10-269 (361)
212 KOG4497 Uncharacterized conser 99.5 2.6E-11 5.6E-16 104.2 24.1 235 45-294 49-394 (447)
213 KOG1517 Guanine nucleotide bin 99.5 1.4E-12 3.1E-17 127.2 18.5 242 43-294 1108-1384(1387)
214 PRK03629 tolB translocation pr 99.5 3.4E-11 7.4E-16 114.9 27.7 175 114-294 179-366 (429)
215 PF02239 Cytochrom_D1: Cytochr 99.5 6.4E-11 1.4E-15 109.9 28.3 191 57-255 6-210 (369)
216 KOG1445 Tumor-specific antigen 99.5 1.8E-12 3.9E-17 120.1 17.4 177 114-294 603-801 (1012)
217 KOG2315 Predicted translation 99.5 1.1E-10 2.4E-15 107.2 28.7 237 47-295 37-348 (566)
218 KOG3881 Uncharacterized conser 99.5 7.2E-12 1.6E-16 109.9 19.7 245 40-295 51-324 (412)
219 PRK05137 tolB translocation pr 99.5 2.3E-11 5E-16 116.6 25.4 217 66-294 183-415 (435)
220 PRK02889 tolB translocation pr 99.5 1.5E-11 3.3E-16 117.4 23.7 196 85-290 193-402 (427)
221 KOG4227 WD40 repeat protein [G 99.5 6.8E-12 1.5E-16 110.0 18.4 211 79-296 48-279 (609)
222 PRK05137 tolB translocation pr 99.5 4.6E-11 1E-15 114.6 26.1 173 114-293 182-368 (435)
223 KOG1310 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 120.2 12.9 211 34-251 40-307 (758)
224 PF02239 Cytochrom_D1: Cytochr 99.4 5.4E-11 1.2E-15 110.4 24.7 237 47-296 39-352 (369)
225 PRK02889 tolB translocation pr 99.4 7.5E-11 1.6E-15 112.6 26.4 175 114-295 176-364 (427)
226 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 2.9E-14 95.4 29.4 253 38-294 33-324 (346)
227 KOG1354 Serine/threonine prote 99.4 6.5E-11 1.4E-15 102.4 20.9 244 43-296 24-364 (433)
228 KOG1310 WD40 repeat protein [G 99.4 3.8E-12 8.1E-17 116.1 13.5 208 81-296 44-308 (758)
229 PF10282 Lactonase: Lactonase, 99.4 1.7E-09 3.7E-14 100.4 31.5 241 45-292 37-323 (345)
230 KOG0642 Cell-cycle nuclear pro 99.4 3.6E-12 7.9E-17 116.6 13.0 212 38-257 338-571 (577)
231 KOG2139 WD40 repeat protein [G 99.4 2.6E-10 5.7E-15 99.3 23.6 248 41-294 137-434 (445)
232 KOG2139 WD40 repeat protein [G 99.4 1.5E-10 3.2E-15 100.8 21.6 227 44-283 98-367 (445)
233 KOG2394 WD40 protein DMR-N9 [G 99.4 1.5E-11 3.3E-16 112.0 15.8 216 55-295 184-456 (636)
234 PF08662 eIF2A: Eukaryotic tra 99.4 9.7E-11 2.1E-15 98.8 19.3 113 177-295 8-137 (194)
235 PF10282 Lactonase: Lactonase, 99.4 2.4E-08 5.1E-13 92.8 36.0 278 65-397 13-330 (345)
236 TIGR02800 propeller_TolB tol-p 99.4 5.1E-10 1.1E-14 107.2 25.7 174 114-294 170-357 (417)
237 TIGR02800 propeller_TolB tol-p 99.3 6.7E-10 1.5E-14 106.3 23.8 212 66-290 171-396 (417)
238 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.7E-09 1.7E-13 94.0 29.1 236 52-297 53-336 (352)
239 PRK01029 tolB translocation pr 99.3 9.1E-10 2E-14 104.8 23.5 201 85-295 182-407 (428)
240 KOG2315 Predicted translation 99.3 9.8E-10 2.1E-14 101.0 22.1 235 48-294 129-393 (566)
241 KOG2041 WD40 repeat protein [G 99.3 9.7E-10 2.1E-14 103.7 22.1 287 42-390 12-339 (1189)
242 KOG2111 Uncharacterized conser 99.3 7.5E-09 1.6E-13 89.0 25.5 214 65-293 75-324 (346)
243 PRK04792 tolB translocation pr 99.3 1.2E-09 2.6E-14 104.8 23.3 214 66-291 199-425 (448)
244 PRK04792 tolB translocation pr 99.3 6.6E-10 1.4E-14 106.6 21.1 218 41-271 214-446 (448)
245 PRK00178 tolB translocation pr 99.3 5.8E-09 1.3E-13 100.2 27.7 173 115-294 180-366 (430)
246 KOG2314 Translation initiation 99.3 3.7E-09 8E-14 97.1 23.9 237 47-292 213-479 (698)
247 KOG1240 Protein kinase contain 99.2 1.7E-09 3.6E-14 107.9 22.5 209 79-296 1040-1278(1431)
248 PRK00178 tolB translocation pr 99.2 3.3E-09 7E-14 101.9 24.2 214 67-292 181-407 (430)
249 KOG4547 WD40 repeat-containing 99.2 7.8E-09 1.7E-13 95.8 23.9 187 98-295 4-224 (541)
250 KOG0644 Uncharacterized conser 99.2 2.9E-11 6.2E-16 115.6 8.0 193 84-297 187-389 (1113)
251 PRK01029 tolB translocation pr 99.2 6.8E-09 1.5E-13 98.9 23.5 224 41-273 181-426 (428)
252 KOG0974 WD-repeat protein WDR6 99.2 1.2E-09 2.6E-14 107.3 18.4 136 150-291 107-246 (967)
253 KOG3881 Uncharacterized conser 99.2 1.2E-09 2.5E-14 96.3 16.3 215 44-272 105-342 (412)
254 COG5354 Uncharacterized protei 99.2 1.2E-08 2.5E-13 93.0 23.0 241 43-293 31-308 (561)
255 KOG1064 RAVE (regulator of V-A 99.2 1.8E-10 3.8E-15 118.4 12.3 188 86-296 2207-2403(2439)
256 KOG1354 Serine/threonine prote 99.2 4.1E-10 9E-15 97.5 12.4 254 86-389 24-360 (433)
257 PF04762 IKI3: IKI3 family; I 99.2 9.9E-08 2.2E-12 98.3 31.8 244 44-294 21-336 (928)
258 KOG1334 WD40 repeat protein [G 99.2 8.7E-10 1.9E-14 99.6 14.5 199 83-289 138-364 (559)
259 KOG1409 Uncharacterized conser 99.1 8.2E-09 1.8E-13 89.6 18.2 249 33-295 13-274 (404)
260 KOG0974 WD-repeat protein WDR6 99.1 3E-08 6.5E-13 97.7 24.1 194 43-248 86-289 (967)
261 KOG0280 Uncharacterized conser 99.1 1.1E-08 2.3E-13 87.1 18.3 219 65-295 46-288 (339)
262 PF04762 IKI3: IKI3 family; I 99.1 5.3E-07 1.1E-11 93.1 34.4 311 42-390 73-458 (928)
263 PLN02919 haloacid dehalogenase 99.1 1.6E-07 3.5E-12 98.6 31.2 239 48-295 571-892 (1057)
264 TIGR02658 TTQ_MADH_Hv methylam 99.1 7E-07 1.5E-11 81.4 30.7 220 65-296 27-292 (352)
265 TIGR03300 assembly_YfgL outer 99.1 1.2E-07 2.5E-12 89.6 26.6 218 56-295 105-342 (377)
266 KOG2321 WD40 repeat protein [G 99.1 8.5E-09 1.8E-13 95.2 17.8 175 114-294 155-346 (703)
267 KOG1409 Uncharacterized conser 99.1 1.9E-08 4.2E-13 87.4 18.4 196 44-248 68-271 (404)
268 COG4946 Uncharacterized protei 99.1 6.2E-08 1.3E-12 87.7 22.1 142 39-191 354-505 (668)
269 PF15492 Nbas_N: Neuroblastoma 99.1 1.9E-07 4.2E-12 79.7 23.8 229 49-296 2-264 (282)
270 COG2706 3-carboxymuconate cycl 99.1 2.9E-07 6.3E-12 81.0 25.2 221 45-270 89-345 (346)
271 PF08450 SGL: SMP-30/Gluconola 99.0 2.8E-06 6.1E-11 75.0 31.2 193 92-294 4-215 (246)
272 TIGR03300 assembly_YfgL outer 99.0 7.1E-07 1.5E-11 84.2 28.2 221 56-295 65-301 (377)
273 PRK04043 tolB translocation pr 99.0 5.4E-07 1.2E-11 85.4 27.0 195 89-294 189-403 (419)
274 PF08450 SGL: SMP-30/Gluconola 98.9 7E-06 1.5E-10 72.5 30.4 212 49-280 4-244 (246)
275 PF07433 DUF1513: Protein of u 98.9 2.8E-06 6.2E-11 74.9 26.9 238 46-293 6-285 (305)
276 KOG0280 Uncharacterized conser 98.9 1.3E-07 2.9E-12 80.6 17.3 178 114-295 46-245 (339)
277 KOG2314 Translation initiation 98.9 6.8E-07 1.5E-11 82.6 22.9 236 45-292 250-526 (698)
278 PRK04043 tolB translocation pr 98.9 8E-07 1.7E-11 84.3 24.5 198 46-256 189-408 (419)
279 KOG4547 WD40 repeat-containing 98.9 5.7E-07 1.2E-11 83.7 22.4 184 54-248 3-221 (541)
280 KOG3914 WD repeat protein WDR4 98.9 3.5E-08 7.6E-13 87.5 13.9 156 138-297 67-229 (390)
281 COG5170 CDC55 Serine/threonine 98.9 3.7E-08 7.9E-13 84.6 13.5 295 32-388 14-367 (460)
282 KOG2041 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 89.4 17.3 229 39-278 66-325 (1189)
283 KOG1064 RAVE (regulator of V-A 98.9 3.1E-08 6.6E-13 102.5 13.8 192 43-257 2207-2408(2439)
284 KOG4532 WD40-like repeat conta 98.9 6.5E-07 1.4E-11 75.5 19.1 239 48-295 71-335 (344)
285 COG4946 Uncharacterized protei 98.9 1.7E-06 3.6E-11 78.7 22.6 185 96-295 275-481 (668)
286 COG5354 Uncharacterized protei 98.8 2.7E-06 5.9E-11 78.0 23.5 236 49-295 136-399 (561)
287 PF13360 PQQ_2: PQQ-like domai 98.8 2.4E-06 5.1E-11 75.0 23.1 215 64-295 2-234 (238)
288 KOG1912 WD40 repeat protein [G 98.8 2.7E-07 5.9E-12 88.4 17.5 234 47-294 18-307 (1062)
289 KOG4190 Uncharacterized conser 98.8 2E-08 4.4E-13 92.4 7.6 203 83-294 731-951 (1034)
290 PLN02919 haloacid dehalogenase 98.8 5.6E-06 1.2E-10 87.2 26.7 199 46-251 625-892 (1057)
291 PRK11138 outer membrane biogen 98.7 8.5E-06 1.8E-10 77.3 25.2 220 57-295 121-357 (394)
292 KOG0882 Cyclophilin-related pe 98.7 1.7E-07 3.7E-12 84.4 12.1 246 41-297 6-311 (558)
293 KOG4532 WD40-like repeat conta 98.7 1.3E-05 2.7E-10 68.0 20.5 188 100-296 85-287 (344)
294 PRK11138 outer membrane biogen 98.6 2.8E-05 6.1E-10 73.8 25.5 223 56-295 69-316 (394)
295 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.5E-12 57.3 6.0 39 249-289 1-39 (39)
296 KOG0309 Conserved WD40 repeat- 98.6 5.5E-07 1.2E-11 85.9 13.2 238 43-293 23-279 (1081)
297 KOG1920 IkappaB kinase complex 98.6 2.5E-05 5.4E-10 79.1 25.3 202 85-294 66-325 (1265)
298 KOG4190 Uncharacterized conser 98.6 9E-08 2E-12 88.2 7.7 243 33-289 724-986 (1034)
299 PF06433 Me-amine-dh_H: Methyl 98.6 7.1E-05 1.5E-09 67.0 24.7 242 47-296 38-325 (342)
300 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.2E-12 56.2 5.8 38 207-245 2-39 (39)
301 KOG3914 WD repeat protein WDR4 98.6 1.7E-06 3.7E-11 77.0 13.5 152 46-206 64-224 (390)
302 PF15492 Nbas_N: Neuroblastoma 98.6 2.7E-05 5.8E-10 66.9 20.1 197 44-257 43-269 (282)
303 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.9E-11 73.4 11.3 109 177-289 182-316 (319)
304 KOG1912 WD40 repeat protein [G 98.5 1.7E-05 3.7E-10 76.5 19.7 244 133-389 15-305 (1062)
305 PF13360 PQQ_2: PQQ-like domai 98.5 9.5E-05 2.1E-09 64.8 23.7 173 113-294 2-194 (238)
306 KOG0309 Conserved WD40 repeat- 98.5 1E-06 2.3E-11 84.1 11.4 238 46-293 69-341 (1081)
307 PF11768 DUF3312: Protein of u 98.5 0.0012 2.6E-08 62.6 32.9 85 214-303 257-341 (545)
308 PF07433 DUF1513: Protein of u 98.5 0.00021 4.5E-09 63.3 24.4 198 91-296 8-252 (305)
309 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.5E-11 76.6 7.8 142 56-207 225-378 (425)
310 KOG2695 WD40 repeat protein [G 98.3 2.4E-06 5.2E-11 74.7 8.8 111 179-296 218-334 (425)
311 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0016 3.4E-08 55.5 25.4 108 56-172 23-135 (354)
312 KOG1920 IkappaB kinase complex 98.3 0.00026 5.7E-09 72.0 23.1 193 45-249 69-324 (1265)
313 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00081 1.8E-08 63.8 25.7 223 48-289 32-285 (410)
314 PF04053 Coatomer_WDAD: Coatom 98.3 0.00027 5.8E-09 67.2 22.3 222 42-294 30-265 (443)
315 cd00216 PQQ_DH Dehydrogenases 98.3 0.0028 6.2E-08 61.8 30.0 230 57-296 111-429 (488)
316 PF03178 CPSF_A: CPSF A subuni 98.2 0.0023 5E-08 58.9 26.7 175 114-293 2-204 (321)
317 PF03178 CPSF_A: CPSF A subuni 98.2 0.0037 8E-08 57.6 27.7 219 65-288 2-262 (321)
318 PRK02888 nitrous-oxide reducta 98.2 0.00042 9.2E-09 67.1 21.6 166 114-292 215-405 (635)
319 COG5170 CDC55 Serine/threonine 98.2 1.2E-05 2.7E-10 69.4 9.6 157 132-292 171-368 (460)
320 KOG4714 Nucleoporin [Nuclear s 98.2 8.4E-05 1.8E-09 62.8 14.1 72 218-292 181-255 (319)
321 COG0823 TolB Periplasmic compo 98.2 7.5E-05 1.6E-09 70.6 15.4 189 87-283 192-391 (425)
322 KOG1275 PAB-dependent poly(A) 98.2 6.8E-05 1.5E-09 73.8 15.2 175 58-245 149-340 (1118)
323 COG3386 Gluconolactonase [Carb 98.2 0.0018 3.9E-08 58.5 23.4 178 114-294 47-245 (307)
324 COG0823 TolB Periplasmic compo 98.2 0.00032 6.9E-09 66.4 19.3 174 114-294 173-361 (425)
325 PF04053 Coatomer_WDAD: Coatom 98.1 0.0004 8.6E-09 66.0 18.8 219 85-389 30-263 (443)
326 KOG3617 WD40 and TPR repeat-co 98.1 0.00014 3.1E-09 71.1 15.7 221 48-291 19-259 (1416)
327 KOG2114 Vacuolar assembly/sort 98.1 0.00084 1.8E-08 66.1 20.9 189 94-293 30-245 (933)
328 KOG0882 Cyclophilin-related pe 98.1 5.4E-05 1.2E-09 68.7 11.8 197 95-298 16-238 (558)
329 KOG2114 Vacuolar assembly/sort 98.1 0.0023 5E-08 63.1 23.0 198 51-256 30-252 (933)
330 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0093 2E-07 56.7 26.8 168 115-294 62-249 (410)
331 cd00216 PQQ_DH Dehydrogenases 98.0 0.01 2.2E-07 58.0 27.4 191 58-257 63-329 (488)
332 KOG1645 RING-finger-containing 98.0 0.00034 7.5E-09 62.8 15.3 242 37-292 186-462 (463)
333 KOG4640 Anaphase-promoting com 98.0 6.6E-05 1.4E-09 71.1 10.8 159 216-389 20-192 (665)
334 COG3391 Uncharacterized conser 98.0 0.017 3.6E-07 54.5 27.7 238 46-296 32-288 (381)
335 KOG3621 WD40 repeat-containing 97.9 0.0043 9.3E-08 60.0 22.1 117 39-161 28-155 (726)
336 KOG1832 HIV-1 Vpr-binding prot 97.9 1.1E-05 2.4E-10 78.8 4.2 216 39-279 1096-1319(1516)
337 KOG1275 PAB-dependent poly(A) 97.9 0.0006 1.3E-08 67.4 15.4 170 114-289 157-340 (1118)
338 PF00780 CNH: CNH domain; Int 97.9 0.014 3E-07 52.4 23.7 199 44-257 35-265 (275)
339 PF02897 Peptidase_S9_N: Proly 97.9 0.025 5.4E-07 54.2 26.7 243 45-295 124-408 (414)
340 PF08553 VID27: VID27 cytoplas 97.8 0.00093 2E-08 67.2 16.9 132 151-292 503-648 (794)
341 PRK02888 nitrous-oxide reducta 97.8 0.0037 8E-08 60.8 20.1 186 51-248 199-405 (635)
342 COG3490 Uncharacterized protei 97.8 0.008 1.7E-07 52.1 19.7 225 48-289 71-346 (366)
343 KOG1832 HIV-1 Vpr-binding prot 97.8 1.6E-05 3.4E-10 77.9 3.6 189 82-296 1096-1296(1516)
344 COG3386 Gluconolactonase [Carb 97.8 0.021 4.5E-07 51.7 22.8 214 49-280 29-274 (307)
345 KOG2066 Vacuolar assembly/sort 97.8 0.0015 3.3E-08 63.8 16.1 173 99-293 49-235 (846)
346 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.011 2.4E-07 55.2 21.6 231 44-279 42-345 (353)
347 PF06977 SdiA-regulated: SdiA- 97.7 0.021 4.6E-07 49.9 21.0 197 82-288 16-247 (248)
348 PF11768 DUF3312: Protein of u 97.6 0.005 1.1E-07 58.5 17.3 71 176-249 261-331 (545)
349 KOG2066 Vacuolar assembly/sort 97.6 0.0015 3.3E-08 63.9 14.1 92 187-291 50-146 (846)
350 PF05694 SBP56: 56kDa selenium 97.6 0.037 8.1E-07 51.4 21.8 225 55-280 86-392 (461)
351 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.07 1.5E-06 50.2 25.8 80 215-296 306-403 (415)
352 PF14870 PSII_BNR: Photosynthe 97.5 0.063 1.4E-06 48.4 29.8 234 43-294 15-263 (302)
353 KOG4640 Anaphase-promoting com 97.5 0.00048 1E-08 65.5 9.0 93 176-271 22-115 (665)
354 KOG1645 RING-finger-containing 97.5 0.00033 7.2E-09 62.9 7.6 90 202-295 179-270 (463)
355 PF08553 VID27: VID27 cytoplas 97.5 0.016 3.5E-07 58.5 20.0 129 114-246 504-646 (794)
356 smart00320 WD40 WD40 repeats. 97.4 0.00051 1.1E-08 40.0 5.7 38 250-289 3-40 (40)
357 KOG1008 Uncharacterized conser 97.4 4.1E-05 8.9E-10 72.5 0.7 195 90-294 61-278 (783)
358 KOG3621 WD40 repeat-containing 97.4 0.00071 1.5E-08 65.1 8.8 113 176-292 37-155 (726)
359 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.035 7.5E-07 51.9 19.7 170 114-295 23-222 (353)
360 smart00320 WD40 WD40 repeats. 97.4 0.00061 1.3E-08 39.6 5.4 37 208-245 4-40 (40)
361 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.027 5.9E-07 41.9 14.7 65 219-290 2-70 (111)
362 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.08 1.7E-06 45.4 19.9 32 52-83 101-133 (354)
363 PF06977 SdiA-regulated: SdiA- 97.3 0.091 2E-06 45.9 22.6 195 40-244 17-247 (248)
364 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.022 4.8E-07 42.4 13.9 93 100-201 16-110 (111)
365 KOG3617 WD40 and TPR repeat-co 97.3 0.00066 1.4E-08 66.7 7.4 108 181-292 22-132 (1416)
366 KOG4499 Ca2+-binding protein R 97.3 0.08 1.7E-06 44.7 19.8 200 56-271 27-263 (310)
367 KOG2395 Protein involved in va 97.3 0.024 5.2E-07 53.3 17.0 136 151-293 355-502 (644)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.22 4.7E-06 49.2 28.3 234 58-296 122-495 (527)
369 KOG1897 Damage-specific DNA bi 97.3 0.29 6.3E-06 49.8 27.3 228 57-292 685-943 (1096)
370 PF08596 Lgl_C: Lethal giant l 97.2 0.2 4.3E-06 47.3 24.0 234 46-295 3-294 (395)
371 PF02897 Peptidase_S9_N: Proly 97.2 0.23 5.1E-06 47.5 24.2 199 89-291 125-357 (414)
372 KOG2079 Vacuolar assembly/sort 97.1 0.0024 5.3E-08 64.5 9.2 104 187-294 100-206 (1206)
373 PRK13616 lipoprotein LpqB; Pro 97.1 0.069 1.5E-06 53.1 19.0 106 179-292 354-477 (591)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.37 8.1E-06 47.5 28.6 186 57-252 70-338 (527)
375 KOG2395 Protein involved in va 97.0 0.012 2.6E-07 55.2 12.2 138 100-246 347-499 (644)
376 COG3391 Uncharacterized conser 97.0 0.32 6.9E-06 45.9 25.3 217 46-272 75-309 (381)
377 PF05096 Glu_cyclase_2: Glutam 97.0 0.22 4.8E-06 43.5 24.9 185 85-280 42-249 (264)
378 PF00780 CNH: CNH domain; Int 97.0 0.26 5.6E-06 44.1 23.1 217 54-297 5-261 (275)
379 PF14583 Pectate_lyase22: Olig 96.7 0.49 1.1E-05 43.8 26.6 243 49-293 85-383 (386)
380 PF05096 Glu_cyclase_2: Glutam 96.7 0.37 8E-06 42.2 24.6 184 44-236 44-250 (264)
381 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0085 1.8E-07 37.2 5.9 34 260-294 10-43 (47)
382 PRK13616 lipoprotein LpqB; Pro 96.7 0.21 4.5E-06 49.8 18.6 188 44-239 349-561 (591)
383 COG3490 Uncharacterized protei 96.6 0.17 3.6E-06 44.2 14.9 161 122-282 56-246 (366)
384 PF14583 Pectate_lyase22: Olig 96.4 0.77 1.7E-05 42.5 26.4 219 50-282 41-303 (386)
385 KOG1008 Uncharacterized conser 96.4 0.0007 1.5E-08 64.5 -0.6 162 38-205 96-275 (783)
386 COG3204 Uncharacterized protei 96.3 0.7 1.5E-05 40.8 18.2 167 41-213 82-271 (316)
387 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.2E-07 35.6 5.3 35 216-252 11-45 (47)
388 COG3823 Glutamine cyclotransfe 96.1 0.27 5.9E-06 40.9 13.1 106 55-167 55-165 (262)
389 PF08596 Lgl_C: Lethal giant l 96.1 0.21 4.6E-06 47.1 14.1 80 210-291 80-173 (395)
390 COG3204 Uncharacterized protei 96.1 0.95 2.1E-05 40.0 19.0 200 48-255 46-270 (316)
391 KOG2444 WD40 repeat protein [G 96.0 0.022 4.8E-07 47.8 6.2 104 189-296 73-182 (238)
392 COG3823 Glutamine cyclotransfe 95.8 0.79 1.7E-05 38.3 14.2 168 99-279 56-247 (262)
393 PF06433 Me-amine-dh_H: Methyl 95.7 1.6 3.5E-05 39.7 25.2 199 47-257 97-330 (342)
394 PF10647 Gmad1: Lipoprotein Lp 95.6 1.5 3.3E-05 38.7 17.8 117 177-296 26-149 (253)
395 PRK10115 protease 2; Provision 95.6 3.2 7E-05 42.5 29.0 240 45-294 127-397 (686)
396 PF14870 PSII_BNR: Photosynthe 95.6 1.7 3.8E-05 39.2 25.1 190 86-289 15-213 (302)
397 TIGR03118 PEPCTERM_chp_1 conse 95.5 1.7 3.6E-05 38.8 20.6 218 45-296 23-284 (336)
398 KOG2079 Vacuolar assembly/sort 95.3 1.4 3.1E-05 45.6 16.9 104 49-159 92-202 (1206)
399 PF07995 GSDH: Glucose / Sorbo 95.1 2.7 5.8E-05 38.9 26.9 235 46-286 3-330 (331)
400 KOG4499 Ca2+-binding protein R 95.1 1.8 3.9E-05 36.9 20.6 143 178-378 112-274 (310)
401 PF10168 Nup88: Nuclear pore c 94.8 4.9 0.00011 41.2 19.7 77 217-295 85-183 (717)
402 PF12234 Rav1p_C: RAVE protein 94.6 1.9 4.1E-05 43.0 15.7 100 189-291 43-156 (631)
403 PF14727 PHTB1_N: PTHB1 N-term 94.6 4.2 9.2E-05 38.6 26.2 142 99-246 37-203 (418)
404 KOG2280 Vacuolar assembly/sort 94.2 5.1 0.00011 40.2 17.3 212 49-272 37-270 (829)
405 KOG1897 Damage-specific DNA bi 94.2 8 0.00017 40.1 28.1 243 42-294 528-818 (1096)
406 PF15390 DUF4613: Domain of un 94.1 6.3 0.00014 38.5 22.3 113 41-159 53-185 (671)
407 PRK13684 Ycf48-like protein; P 94.0 5.1 0.00011 37.0 30.3 226 44-286 45-283 (334)
408 PF12234 Rav1p_C: RAVE protein 93.9 1.4 3.1E-05 43.8 13.1 101 53-159 38-155 (631)
409 KOG2444 WD40 repeat protein [G 93.8 0.066 1.4E-06 45.1 3.4 94 150-246 78-176 (238)
410 PF08728 CRT10: CRT10; InterP 93.8 3.4 7.4E-05 41.7 15.7 105 184-291 112-246 (717)
411 KOG3630 Nuclear pore complex, 93.8 0.86 1.9E-05 47.4 11.6 143 133-278 100-260 (1405)
412 PRK10115 protease 2; Provision 93.7 9.4 0.0002 39.2 23.2 200 88-291 127-344 (686)
413 PF07569 Hira: TUP1-like enhan 93.7 0.4 8.6E-06 41.2 8.1 79 269-389 18-96 (219)
414 PF10313 DUF2415: Uncharacteri 93.6 0.28 6E-06 29.6 4.9 31 263-293 2-35 (43)
415 TIGR03074 PQQ_membr_DH membran 93.6 10 0.00022 39.2 24.7 225 57-297 195-483 (764)
416 COG5167 VID27 Protein involved 93.4 2.3 5E-05 40.5 12.8 144 143-294 477-635 (776)
417 PF05694 SBP56: 56kDa selenium 93.2 7.8 0.00017 36.6 25.2 191 100-296 89-347 (461)
418 PF10313 DUF2415: Uncharacteri 93.2 0.52 1.1E-05 28.4 5.6 31 217-248 1-34 (43)
419 PF10647 Gmad1: Lipoprotein Lp 93.0 6.1 0.00013 34.9 21.5 158 46-211 25-203 (253)
420 PF15390 DUF4613: Domain of un 93.0 2.6 5.7E-05 40.9 12.7 113 134-246 57-185 (671)
421 TIGR02604 Piru_Ver_Nterm putat 92.6 7.6 0.00017 36.4 15.7 140 134-282 14-204 (367)
422 COG4880 Secreted protein conta 92.6 5.5 0.00012 37.2 13.8 167 114-292 406-593 (603)
423 PHA02713 hypothetical protein; 92.1 14 0.0003 36.9 21.3 64 227-294 463-536 (557)
424 PF07569 Hira: TUP1-like enhan 92.0 1 2.2E-05 38.7 8.4 68 224-293 18-97 (219)
425 COG5167 VID27 Protein involved 91.4 6.9 0.00015 37.5 13.2 145 93-247 473-632 (776)
426 KOG4441 Proteins containing BT 91.1 18 0.00039 36.2 20.2 191 99-294 285-502 (571)
427 PF10168 Nup88: Nuclear pore c 90.7 8.5 0.00019 39.5 14.5 28 263-291 86-113 (717)
428 PF05935 Arylsulfotrans: Aryls 90.5 18 0.0004 35.3 16.4 135 152-294 128-304 (477)
429 TIGR02276 beta_rpt_yvtn 40-res 90.3 2.1 4.6E-05 25.3 6.4 32 226-258 1-33 (42)
430 KOG1916 Nuclear protein, conta 90.2 0.58 1.3E-05 47.4 5.5 177 114-296 111-328 (1283)
431 KOG4460 Nuclear pore complex, 90.0 8.6 0.00019 37.0 12.6 78 218-296 105-203 (741)
432 PF07250 Glyoxal_oxid_N: Glyox 89.8 5.8 0.00013 34.6 10.9 139 115-257 47-207 (243)
433 PF02333 Phytase: Phytase; In 89.7 18 0.00038 33.9 21.0 187 97-293 66-292 (381)
434 PF12657 TFIIIC_delta: Transcr 88.3 5 0.00011 33.0 9.2 31 217-248 86-122 (173)
435 KOG4441 Proteins containing BT 88.1 31 0.00066 34.6 20.6 233 53-294 282-549 (571)
436 KOG2280 Vacuolar assembly/sort 88.1 16 0.00034 36.9 13.4 75 31-106 71-146 (829)
437 PF07676 PD40: WD40-like Beta 88.0 1.6 3.5E-05 25.5 4.5 29 42-70 6-38 (39)
438 PF08801 Nucleoporin_N: Nup133 87.8 26 0.00057 33.6 15.2 30 263-292 191-220 (422)
439 PLN00033 photosystem II stabil 87.6 26 0.00057 33.2 29.7 102 180-287 244-352 (398)
440 KOG2247 WD40 repeat-containing 87.4 0.095 2.1E-06 49.1 -1.7 142 87-239 34-181 (615)
441 PF12657 TFIIIC_delta: Transcr 87.4 5.1 0.00011 33.0 8.7 31 263-293 87-123 (173)
442 KOG1900 Nuclear pore complex, 87.3 19 0.00042 38.7 14.2 142 148-293 95-274 (1311)
443 TIGR02604 Piru_Ver_Nterm putat 87.1 27 0.00058 32.8 17.8 149 89-237 15-204 (367)
444 PF10214 Rrn6: RNA polymerase 86.4 46 0.001 34.8 18.3 76 214-291 77-176 (765)
445 KOG3616 Selective LIM binding 86.2 14 0.00031 37.1 12.0 32 43-74 13-45 (1636)
446 PRK13684 Ycf48-like protein; P 86.1 28 0.00061 32.2 24.5 149 133-289 172-329 (334)
447 PHA02713 hypothetical protein; 85.9 40 0.00087 33.7 17.0 25 227-252 512-538 (557)
448 COG5276 Uncharacterized conser 84.8 29 0.00062 31.1 20.4 190 89-294 88-288 (370)
449 KOG2377 Uncharacterized conser 84.8 9.2 0.0002 36.1 9.5 102 40-149 62-169 (657)
450 PF05935 Arylsulfotrans: Aryls 84.8 41 0.0009 32.9 18.0 191 97-294 113-370 (477)
451 COG3292 Predicted periplasmic 84.1 45 0.00097 32.7 16.0 236 43-292 163-405 (671)
452 PF11715 Nup160: Nucleoporin N 83.7 4.7 0.0001 40.2 8.1 33 263-295 216-252 (547)
453 PF03022 MRJP: Major royal jel 83.6 34 0.00073 30.9 24.5 165 114-279 34-253 (287)
454 PF14269 Arylsulfotran_2: Aryl 83.2 36 0.00078 30.9 17.8 72 218-291 145-220 (299)
455 PF07676 PD40: WD40-like Beta 82.8 5.4 0.00012 23.2 5.1 32 212-244 4-38 (39)
456 PF10214 Rrn6: RNA polymerase 82.8 66 0.0014 33.7 18.1 111 44-161 145-277 (765)
457 PHA03098 kelch-like protein; P 82.4 55 0.0012 32.5 18.9 109 54-164 293-418 (534)
458 COG3292 Predicted periplasmic 82.3 53 0.0011 32.3 15.1 130 114-249 354-493 (671)
459 KOG1983 Tomosyn and related SN 82.0 52 0.0011 35.5 15.1 32 43-74 34-66 (993)
460 KOG0783 Uncharacterized conser 81.6 19 0.0004 36.9 10.7 33 133-165 228-261 (1267)
461 PF14655 RAB3GAP2_N: Rab3 GTPa 81.5 13 0.00028 35.4 9.5 83 84-171 304-409 (415)
462 PF03088 Str_synth: Strictosid 81.3 16 0.00035 26.2 7.8 41 235-279 34-74 (89)
463 KOG1900 Nuclear pore complex, 81.1 20 0.00044 38.5 11.3 104 235-390 96-209 (1311)
464 PF14761 HPS3_N: Hermansky-Pud 79.2 24 0.00051 30.0 9.3 45 98-149 29-75 (215)
465 PF07250 Glyoxal_oxid_N: Glyox 77.8 29 0.00063 30.3 9.8 138 154-295 48-201 (243)
466 TIGR02171 Fb_sc_TIGR02171 Fibr 77.3 18 0.00039 37.6 9.5 86 189-276 321-413 (912)
467 PF14781 BBS2_N: Ciliary BBSom 77.3 32 0.0007 26.8 12.9 88 49-142 3-101 (136)
468 COG4590 ABC-type uncharacteriz 77.2 20 0.00044 34.0 9.0 158 133-296 220-391 (733)
469 PF07995 GSDH: Glucose / Sorbo 77.1 61 0.0013 29.9 13.5 49 135-184 3-58 (331)
470 COG5276 Uncharacterized conser 76.8 56 0.0012 29.3 24.8 221 54-290 136-368 (370)
471 KOG3630 Nuclear pore complex, 76.7 36 0.00077 36.3 11.3 116 114-233 124-260 (1405)
472 PF12768 Rax2: Cortical protei 76.5 31 0.00068 30.9 9.9 52 241-294 18-75 (281)
473 KOG1916 Nuclear protein, conta 75.7 1.6 3.4E-05 44.5 1.7 73 216-292 180-266 (1283)
474 smart00564 PQQ beta-propeller 75.3 8.1 0.00018 21.3 4.0 25 230-255 8-32 (33)
475 COG1520 FOG: WD40-like repeat 74.9 74 0.0016 29.8 23.0 196 53-257 66-278 (370)
476 KOG2247 WD40 repeat-containing 74.7 0.44 9.6E-06 44.9 -2.2 138 140-285 41-182 (615)
477 KOG2377 Uncharacterized conser 74.5 83 0.0018 30.1 16.1 129 48-182 26-163 (657)
478 COG1770 PtrB Protease II [Amin 73.3 1.1E+02 0.0023 30.9 24.9 242 46-295 130-400 (682)
479 PF03022 MRJP: Major royal jel 73.2 71 0.0015 28.8 17.6 155 136-294 3-218 (287)
480 PF14779 BBS1: Ciliary BBSome 73.1 15 0.00032 32.3 6.8 32 354-385 220-255 (257)
481 PF14781 BBS2_N: Ciliary BBSom 71.0 48 0.001 25.9 11.8 67 95-166 6-87 (136)
482 PF14761 HPS3_N: Hermansky-Pud 70.4 67 0.0015 27.4 13.5 50 229-282 29-80 (215)
483 PF01011 PQQ: PQQ enzyme repea 70.2 16 0.00034 21.2 4.5 28 230-258 2-29 (38)
484 TIGR03074 PQQ_membr_DH membran 70.0 1.5E+02 0.0032 31.1 23.5 20 237-257 335-354 (764)
485 COG4257 Vgb Streptogramin lyas 69.8 81 0.0018 28.1 16.3 202 86-294 60-265 (353)
486 KOG3611 Semaphorins [Signal tr 69.4 73 0.0016 32.9 11.7 71 216-286 407-488 (737)
487 PF09826 Beta_propel: Beta pro 69.2 1.2E+02 0.0027 30.0 22.8 170 112-293 302-520 (521)
488 PF11715 Nup160: Nucleoporin N 67.4 15 0.00032 36.6 6.6 38 218-256 216-257 (547)
489 PF01436 NHL: NHL repeat; Int 67.2 16 0.00035 19.5 3.8 25 264-288 4-28 (28)
490 KOG1898 Splicing factor 3b, su 65.8 1.9E+02 0.0042 30.9 18.2 69 222-294 939-1007(1205)
491 TIGR03606 non_repeat_PQQ dehyd 65.4 1.4E+02 0.003 29.0 15.4 58 215-273 28-90 (454)
492 KOG3522 Predicted guanine nucl 65.0 67 0.0015 33.1 10.1 97 193-294 597-700 (925)
493 COG5290 IkappaB kinase complex 64.9 1.2E+02 0.0025 31.4 11.6 141 48-191 205-355 (1243)
494 TIGR02276 beta_rpt_yvtn 40-res 63.1 28 0.0006 20.2 6.1 28 114-141 14-41 (42)
495 PHA03098 kelch-like protein; P 62.6 1.7E+02 0.0036 29.1 19.6 64 227-294 437-514 (534)
496 KOG2109 WD40 repeat protein [G 61.3 8.3 0.00018 38.1 3.2 79 204-284 303-391 (788)
497 PLN00033 photosystem II stabil 60.7 1.6E+02 0.0034 28.1 26.6 144 136-288 241-396 (398)
498 KOG1898 Splicing factor 3b, su 59.5 2.5E+02 0.0055 30.1 17.7 129 113-246 911-1047(1205)
499 PF01731 Arylesterase: Arylest 59.1 21 0.00045 25.5 4.2 29 45-73 54-84 (86)
500 PHA02790 Kelch-like protein; P 57.7 1.9E+02 0.0042 28.3 19.3 62 227-294 407-473 (480)
No 1
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1.7e-43 Score=297.79 Aligned_cols=331 Identities=61% Similarity=1.000 Sum_probs=299.3
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
...+++|+.|...+++|.+..++||++++.++.....+...+..++.|.|..+...|++|+..|.|..+.|.|||-...+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 45569999999999999999999999999887666666667788999999999999999999999999999999988899
Q ss_pred EEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc
Q 014977 126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF 204 (415)
Q Consensus 126 ~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~ 204 (415)
++.++.+..+|.++.+.++...++..+.|+||... +.+.++.+....+|.+.+++.+..+..+||+.|..-|.|+|-++
T Consensus 87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 99999999999999999999999999999999997 67889999888888899999999999999999999999999555
Q ss_pred CCcc---eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977 205 GLNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 205 ~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
.... ...+.+|.+.|.+++++-+|.+||++|..|+.|||||..+|+++.+++.+...+.|.+|+|||++.+||++|+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence 4433 4788999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 014977 282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT 361 (415)
Q Consensus 282 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (415)
.|+|+||.++.....++ ..+++.+...++|+|++++|++++|+++.+.
T Consensus 247 KgTlHiF~l~~~~~~~~--------------------------------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~ 294 (346)
T KOG2111|consen 247 KGTLHIFSLRDTENTED--------------------------------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT 294 (346)
T ss_pred CCeEEEEEeecCCCCcc--------------------------------ccccccccccccchhcccceeEEEEEccCCC
Confidence 99999999998664421 1144444555899999999999999999999
Q ss_pred eEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCCC
Q 014977 362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVS 408 (415)
Q Consensus 362 ~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (415)
+++++|..+ +.|++.|.||.+|.+.+++.++|+|.+..+..|+.-.+
T Consensus 295 ~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~ 342 (346)
T KOG2111|consen 295 QCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQD 342 (346)
T ss_pred cEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhhhheeeccc
Confidence 999999999 99999999999999999999999999988888875544
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-42 Score=294.74 Aligned_cols=278 Identities=13% Similarity=0.212 Sum_probs=237.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|.++|.|++|+|+|+.|++|+ |.++|+||+++...... .++|...+.+++|+||+..+++|+.+ |.|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--~KgH~~WVlcvawsPDgk~iASG~~d-----g~I~ 182 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--CKGHKNWVLCVAWSPDGKKIASGSKD-----GSIR 182 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee--ecCCccEEEEEEECCCcchhhccccC-----CeEE
Confidence 4689999999999999999999999 99999999998665554 45999999999999999999999998 9999
Q ss_pred EEECCCCCEEEE-EE-ccCceeEEEEcC-----CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 118 IWDDHQSRCIGE-FA-FRSDVRSVKLSR-----DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 118 vwd~~~~~~~~~-~~-~~~~i~~l~~~~-----~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+||.++|+.+.. +. |...|++++|.| ..+.++ .||.|+|||+..++++..+.+|..+ +.|+.+-+++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG~g- 259 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGGEG- 259 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcCCc-
Confidence 999999977654 55 999999999975 456666 6999999999999999999999984 4555565554
Q ss_pred EEEEeCCccCeEEEEEcCC-------------------------------------------------------------
Q 014977 188 VLACPGLQRGQVRIEHFGL------------------------------------------------------------- 206 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~------------------------------------------------------------- 206 (415)
++++|+.|++|++|....
T Consensus 260 -liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred -eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 445688899999876431
Q ss_pred -------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 207 -------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 207 -------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
+++..+.+|..-|+.+.||||++++|+++.|.. |++||.++|+.+..|++ |-+.|..+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqv 415 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQV 415 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEE
Confidence 223345678889999999999999999999999 99999999999999999 88999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (415)
+|+.|.++|++++.|.+++||++++++-..++..|
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--------------------------------------------- 450 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--------------------------------------------- 450 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEeeeeeecccCCCC---------------------------------------------
Confidence 99999999999999999999999999866544444
Q ss_pred cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
.+.++.+.|+|+ .+++.++.|-.+++|.
T Consensus 451 -----------~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 -----------ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------CceEEEEEecCCCceeecCCCceEEEeec
Confidence 246788999999 6666677788888774
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=9.8e-38 Score=267.90 Aligned_cols=339 Identities=33% Similarity=0.559 Sum_probs=288.4
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....+..+.|+.+...|.+|+....++|+.++.++..... .....|+.+.|+.....+++..+- +.+++++.+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K 76 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK 76 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence 3456788889999999999996677999999877744433 678899999999999999998554 889999999
Q ss_pred CCCEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc-CCCcceEEEecCCCceEEEEeCC-ccCeEE
Q 014977 123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGL-QRGQVR 200 (415)
Q Consensus 123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~-~dg~v~ 200 (415)
.+..+.++.+...|.++.++.+...++....|+|||+++.+.++++..- .++..+++++++..+.++|+.++ ..|.|.
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999999999999888788999999999999999665 67778999999999999998775 457899
Q ss_pred EEE-cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
+|+ .+.+.+..+.+|++.+.+++|+++|.+||++++.|+.||||.+.+|+.+++|+.+.....|.+++|+||+++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 965 5668889999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred eCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCC
Q 014977 280 SDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE 359 (415)
Q Consensus 280 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (415)
+..++|+||.+++.... +++++..+.+ ..+.-.+...+|+|.++.++++.++.|++.++|.
T Consensus 237 S~TeTVHiFKL~~~~~~-----------~~~~p~~~~~--------~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~ 297 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNN-----------PPESPTAGTS--------WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE 297 (391)
T ss_pred cCCCeEEEEEecccccC-----------CCCCCCCCCc--------ccchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence 99999999999987632 1222222222 2222233334488888888999999999999998
Q ss_pred Cc-eEEEEecCC---CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCC
Q 014977 360 VT-HFIAAFGSQ---NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTV 407 (415)
Q Consensus 360 ~~-~~~~~~~~~---~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (415)
.. ...|.+.+. .++.+++.||.+|+|.+++++||||.+++.+.+....
T Consensus 298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~ 349 (391)
T KOG2110|consen 298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI 349 (391)
T ss_pred CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence 55 477888752 9999999999999999999999999999888876543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=267.24 Aligned_cols=256 Identities=17% Similarity=0.169 Sum_probs=225.8
Q ss_pred CCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCC
Q 014977 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQ 110 (415)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~ 110 (415)
+.+.....+-+.+|..+.|+.|++.||+|+ +|.++||+......+. .|.+|...+.++.|+|. ...+++++.|
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~--~l~gH~~~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ--TLRGHTSRVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE--EEeccccceeeEEEccCCCccceeeeccC--
Confidence 334455677889999999999999999999 9999999998765443 46699999999999996 6799999998
Q ss_pred CCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
|++++|++.+..++..+. |...|..++|+|+|++++ .|.+-++||++++..+....+|...+ .++++.++|
T Consensus 241 ---gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v--~~iaf~~DG 315 (459)
T KOG0272|consen 241 ---GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV--FSIAFQPDG 315 (459)
T ss_pred ---CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc--ceeEecCCC
Confidence 999999999999999998 899999999999999999 79999999999999888889998844 555555666
Q ss_pred eEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
.+++ +|+.|..-+||+.+ ++++..+.+|..+|.+++|+|+|..||+|+.|++ ++|||++..+.+.++.+ |..-|+
T Consensus 316 SL~~-tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS 391 (459)
T KOG0272|consen 316 SLAA-TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVS 391 (459)
T ss_pred ceee-ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhh
Confidence 6655 58899999998765 6889999999999999999999999999999999 99999999999999988 889999
Q ss_pred EEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 266 SIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 266 ~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
.+.|+| .|.+|++++.|++++||.-++..+.+.+..|
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 999998 7899999999999999999998876544444
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-34 Score=239.16 Aligned_cols=292 Identities=14% Similarity=0.179 Sum_probs=234.5
Q ss_pred ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeE---EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
....+|++.|+.++..+.+ ..+++++ |..+.+|++......+ .+.+.+|...+..+..++++.+.++++.|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---- 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---- 84 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc----
Confidence 4578999999999999875 5666777 9999999997543322 44566889999999999999999999998
Q ss_pred CCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEecc--CCCcceEEEecCCCc
Q 014977 113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSST 186 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 186 (415)
+.+++||+.+++..+.+. |...|.+++|++|.+.++ .|.+|++|++.. .+..++... .+-+.+++|+|+...
T Consensus 85 -~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 85 -GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred -ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 999999999999998888 999999999999999998 799999999765 444444333 444455666666557
Q ss_pred eEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 187 SVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
.+|+. ++.|++|++|+.++.. ...+.+|.+.++.+++||||.++++|+.||. +.+||++.++.++.+. +...|.
T Consensus 163 p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v~ 237 (315)
T KOG0279|consen 163 PIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIVN 237 (315)
T ss_pred cEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeEe
Confidence 77765 7799999999988754 5567899999999999999999999999999 9999999999988887 567899
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcc
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY 345 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (415)
+++|+|+..+|+.+...+ |+|||++++....+++-... ++
T Consensus 238 sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~-------------------------g~-------------- 277 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGI-------------------------GP-------------- 277 (315)
T ss_pred eEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccc-------------------------cc--------------
Confidence 999999988887776555 99999999987754433300 00
Q ss_pred cccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 346 FSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
.-+.....-..++|+++ ..|+++-.||.|++|++.
T Consensus 278 --------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 --------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 00111122234899999 778888889999999885
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=239.74 Aligned_cols=285 Identities=11% Similarity=0.065 Sum_probs=241.9
Q ss_pred CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
......+|.+.|+++.|++|.++|++++ ||.+.|||.-+..+..... -....|...+|+|.+.+++.|+-| +
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLd-----N 119 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLD-----N 119 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcC-----c
Confidence 3356899999999999999999999999 9999999998766655544 577899999999999999999998 9
Q ss_pred eEEEEECCCC------CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 115 KVIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 115 ~i~vwd~~~~------~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
...||++.+. +..+++. |.+.+.++.|.+|+.++. .|.+..+||+++++.+..|.+|...+..+.++|+ +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-D 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-C
Confidence 9999998754 2334455 899999999999988888 7899999999999999999999986665666664 5
Q ss_pred ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977 186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
++.+++ |+.|+..++|+.+ +..++.|.+|+..|+++.|.|+|.-+++|+.|++ .++||++..+.+..+.......+|
T Consensus 199 ~ntFvS-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 199 GNTFVS-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCeEEe-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence 556655 7889999998865 5778999999999999999999999999999999 999999999999888865455689
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (415)
++++||..|++|.+|..|.++.+||.-+++..-.+..|
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH------------------------------------------ 314 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH------------------------------------------ 314 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeecc------------------------------------------
Confidence 99999999999999999999999999888754322222
Q ss_pred ccccccceEEEEeCCCceEEEEecCCCEEEEEEe-CCcEEEEE
Q 014977 345 YFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCS 386 (415)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-dg~~~~~~ 386 (415)
++-+.++..+|++..++.++ |..++||.
T Consensus 315 --------------eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 --------------ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34566788999977666666 99999984
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=263.83 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=219.3
Q ss_pred CCCccCCCCCCceEEEEEeCC--CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~sp~--g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
++.....+|...|.++.|+|. +..||+|+ ||++++|++++...+. .+.+|...|..+.|+|+|.+|++++.|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--~l~gH~~RVs~VafHPsG~~L~TasfD--- 282 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--DLEGHLARVSRVAFHPSGKFLGTASFD--- 282 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--hhhcchhhheeeeecCCCceeeecccc---
Confidence 556678999999999999997 66899999 9999999998754443 355899999999999999999999998
Q ss_pred CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
.+-++||++++..+.... |...|.+++|.+||.+++ .|..-+|||+++++++..+.+|.. .+..++|+|+|.
T Consensus 283 --~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k--~I~~V~fsPNGy 358 (459)
T KOG0272|consen 283 --STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK--EILSVAFSPNGY 358 (459)
T ss_pred --cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc--ceeeEeECCCce
Confidence 999999999998776666 999999999999999999 688999999999999999999988 566777777887
Q ss_pred EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
.||+ |+.|++++||+++. ..+.++.+|..-|+.+.|+| .|.+|++++.|++ ++||...++.+++.+.+ |.+.|.
T Consensus 359 ~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~ 434 (459)
T KOG0272|consen 359 HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVI 434 (459)
T ss_pred EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceE
Confidence 7775 88999999999876 45788899999999999998 7889999999999 99999999999999999 899999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
++.+++|+++|++++.|.++++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-35 Score=251.58 Aligned_cols=242 Identities=16% Similarity=0.247 Sum_probs=210.4
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-----CeEEEEecCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-----NILALVGAGDNSQY 111 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~~ 111 (415)
....+|...|.|++|+|||+.||+|+ ||.|++||.+++++.- ..|.+|...|.+++|.| ....+++++.|
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~r~las~skD--- 226 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPCRRLASSSKD--- 226 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-ccccCcccceeEEeecccccCCCccceecccCC---
Confidence 34689999999999999999999999 9999999999876644 46779999999999976 45789999988
Q ss_pred CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc-------------
Q 014977 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR------------- 175 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~------------- 175 (415)
|.|+|||+..++++..+. |..+|+|+.|-.+|.+.. .|++|++|+..+|++...+.+|.+-+
T Consensus 227 --g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 227 --GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred --CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999999999999988 999999999998887666 79999999987766555554443211
Q ss_pred ----------------------------------------------------------------ceEEEecCCCceEEEE
Q 014977 176 ----------------------------------------------------------------GLCCLSHHSSTSVLAC 191 (415)
Q Consensus 176 ----------------------------------------------------------------~~~~~~~~~~~~~l~~ 191 (415)
-+..+.++|+++++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 2344557778888876
Q ss_pred eCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 192 PGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 192 ~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
++.|..|++|+. +++.+..+++|-..|+.++|+.|.++|++|+.|.+ +++||+++.+....+.+ |...|.++.|+
T Consensus 385 -aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDws 460 (480)
T KOG0271|consen 385 -ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWS 460 (480)
T ss_pred -eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEec
Confidence 779999999875 56778899999999999999999999999999999 99999999999999998 88899999999
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 014977 271 PNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd 289 (415)
|||+.+++|+.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999995
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.1e-34 Score=231.79 Aligned_cols=250 Identities=18% Similarity=0.230 Sum_probs=215.3
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
.+..|+.+.+.||++.||++....||+||+.+........+.++...+..+.|..++..+.++++| |+++|||++
T Consensus 39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdlR 113 (311)
T KOG0315|consen 39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDLR 113 (311)
T ss_pred CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEecc
Confidence 356799999999999999999999999999987665556677888999999999999999999998 999999999
Q ss_pred CCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
.-.+.+.+++..+|+++..+|+..-++ .+|.|++||+....+...+-.. ....+..+...++|..+++ +...|..
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsml~a-~nnkG~c 191 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSMLAA-ANNKGNC 191 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcEEEE-ecCCccE
Confidence 988888999999999999999755554 6899999999887666655332 2246677777888888876 5689999
Q ss_pred EEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCC
Q 014977 200 RIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 200 ~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp 271 (415)
++|+... .++..+++|.+.+..+.+|||+++||+++.|.+ ++||++.+. +....+.+ |...+++.+||.
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~FS~ 268 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAFSA 268 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeeecc
Confidence 9998754 456778999999999999999999999999999 999999887 55556666 778999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
||+||++|+.|+.+++|+++.+++..+...|
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCCc
Confidence 9999999999999999999999987665555
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-32 Score=243.51 Aligned_cols=276 Identities=20% Similarity=0.296 Sum_probs=237.4
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
......|++++|+.+|.+||+|. +|.++||+.... .. ..+..|...|.++.|+..+.++++++.| +++.+|
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~--~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilw 303 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LI--STLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILW 303 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hh--hhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEE
Confidence 33457899999999999999999 999999998752 22 2456899999999999999999999998 999999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
|..+++..+.+. |..+-.++.|-.+..++. .|+.|+|+.+....++.++.+|.+ .+.++.++|.+.+|++ ++.|
T Consensus 304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS-~SdD 380 (524)
T KOG0273|consen 304 DAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLAS-CSDD 380 (524)
T ss_pred eccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEE-ecCC
Confidence 999999999999 555658899988888877 799999999998899999999888 5667777888888876 7899
Q ss_pred CeEEEEEc-CCcceEEEecCccceEEEEeCCCC---------CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDG---------LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 197 g~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g---------~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
++++||.. +......+.+|...|+.+.|+|.| ..|++++.|++ |++||+..+.++++|.. |..+|.+
T Consensus 381 ~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVys 457 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYS 457 (524)
T ss_pred CeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEE
Confidence 99999994 456788899999999999999964 47999999999 99999999999999988 8899999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
++|+|+|++||+|+.||.|.+|++++++-.+
T Consensus 458 vafS~~g~ylAsGs~dg~V~iws~~~~~l~~------------------------------------------------- 488 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGCVHIWSTKTGKLVK------------------------------------------------- 488 (524)
T ss_pred EEecCCCcEEEecCCCCeeEeccccchheeE-------------------------------------------------
Confidence 9999999999999999999999999998432
Q ss_pred ccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
.. ...+...-+.|+.+ ++|.++-+||.+.+..+
T Consensus 489 -------s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 489 -------SY-QGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -------ee-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 11 11234566889988 77777777999988776
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=240.78 Aligned_cols=283 Identities=14% Similarity=0.175 Sum_probs=244.7
Q ss_pred CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
++.....+|..+|+.+-|+|+-..+++++ |++|++||..+++. ...+++|...+.++.|+..|+++++++.|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsD----- 171 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSD----- 171 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCc-----
Confidence 45566788999999999999999999998 99999999998765 45677999999999999999999999998
Q ss_pred CeEEEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
-.+++||..+ .++++... |...|.++.|-|.|.+++ .|.+|+.|++.++-++.++.+|.. .+..+.++.+|.+
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 6799999876 34555444 899999999999998888 799999999999999999999887 7777788888888
Q ss_pred EEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC---------------CCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 189 LACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD---------------GLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~---------------g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
+|+ ++.|.++++|.... ++...++.|+.+|.+++|.|. ++++++++.|++ |++||+.++.++
T Consensus 250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL 327 (406)
T KOG0295|consen 250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL 327 (406)
T ss_pred EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence 876 88999999998765 466778999999999999773 358999999999 999999999999
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCC
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (415)
.++.+ |...|.+++|+|.|+||+++.+|+++++||++++++.+++..+
T Consensus 328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah------------------------------ 375 (406)
T KOG0295|consen 328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH------------------------------ 375 (406)
T ss_pred EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC------------------------------
Confidence 99999 8999999999999999999999999999999999987644333
Q ss_pred CcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
+..+..+.|+.+ ..+++|+-|-.+.+|.
T Consensus 376 --------------------------~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 --------------------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------------------cceeEEEecCCCCceEEeccccceeeeee
Confidence 234556677766 6777777799888885
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=246.51 Aligned_cols=300 Identities=14% Similarity=0.281 Sum_probs=237.2
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.-...+|..++|+..|.+||.|+ -|.+.||++....-+++ .++|-..+.++.++||+.++++|++| |+|+|
T Consensus 304 Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKv 376 (893)
T KOG0291|consen 304 SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAED-----GKVKV 376 (893)
T ss_pred ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCC-----CcEEE
Confidence 34457899999999999999999 57999999987544444 44889999999999999999999998 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
||...|-|+.++. |...|+.+.|+..++.++ .||+|+.||+...+..+++..+ .++...+++.+|.|.++.+ |+
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A-G~ 454 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA-GA 454 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe-ec
Confidence 9999999999998 999999999999998888 7999999999998888888654 4577888999988877765 65
Q ss_pred ccC-eEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCC
Q 014977 195 QRG-QVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 195 ~dg-~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp 271 (415)
.|. .|.+|... ++.+-.+.+|.++|.+++|+|+|..|++++.|.+ |++||+-.. ..+.++. +...+..++|.|
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrP 530 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRP 530 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcC
Confidence 554 57778865 5667788999999999999999999999999999 999998654 3444555 455799999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS 351 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (415)
||+-||+++.||.|.+||++.+.....+..+.+ ..+.+... ..+..+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD----------------------~~~gR~~~---------D~~ta~-- 577 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKD----------------------LSGGRKET---------DRITAE-- 577 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhh----------------------cccccccc---------ceeehh--
Confidence 999999999999999999998876544433311 00000000 000000
Q ss_pred eEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
-..-...-..+.++++ +-|+++|....|.+|.++.
T Consensus 578 ---~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 578 ---NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ---hcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 0000022345788999 7778888889999999986
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.7e-32 Score=251.86 Aligned_cols=244 Identities=16% Similarity=0.246 Sum_probs=216.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-----------------------------eEEEeccCCCeeEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-----------------------------TFRRDLKSGGFRIV 91 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-----------------------------~~~~~~~~~~~~~~ 91 (415)
.....++|+.|++|+++||.|. |..|++|.+.+.+. .....+-+|...|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 3456799999999999999999 99999999874210 01122347888999
Q ss_pred EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE
Q 014977 92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 92 ~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~ 167 (415)
...|+|+..+|++++.| +++++|.+.+..++..++ |..+|.++.|+|-|.+++ .|++.++|.....++++.
T Consensus 456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 99999999999999998 999999999999999888 999999999999999999 699999999999999999
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
+.+|...+.++.|+|+ ..++++ |+.|.+|++|+. ++..++.+.+|.++|.+++|||+|++|++|+.|+. |.+||+
T Consensus 531 faghlsDV~cv~FHPN--s~Y~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl 606 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPN--SNYVAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL 606 (707)
T ss_pred hcccccccceEEECCc--cccccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence 9999987777766665 457765 899999999886 46788999999999999999999999999999999 999999
Q ss_pred CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+++.+..+.+ |.+.|.++.|+.||..||+|+.|.+|++||+......
T Consensus 607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999 7899999999999999999999999999999876543
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=222.96 Aligned_cols=281 Identities=16% Similarity=0.219 Sum_probs=232.5
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|++.|+.+.|+|+|.+||+|+ |..|.+|++....+.+. .+.+|...|..+.|..++..+++++.| .+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~-~lkgHsgAVM~l~~~~d~s~i~S~gtD-----k~v 114 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW-VLKGHSGAVMELHGMRDGSHILSCGTD-----KTV 114 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee-eeccccceeEeeeeccCCCEEEEecCC-----ceE
Confidence 35789999999999999999999999 99999999765333332 345899999999999999999999998 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+.||.++|+.++.++ |..-|+.+.-+.-|..++ .|+++++||+++...++.+.... ...++.+...+..+.+
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky---qltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY---QLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce---eEEEEEecccccceee
Confidence 999999999999998 888899998666666665 69999999999888887775433 5667777666666665
Q ss_pred eCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCCcc--cE
Q 014977 192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRA--EI 264 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~--~v 264 (415)
|.-|+.|++|+.+. .....+.+|..+|+.+..+++|.++.+-+.|.+ +++||++-. .++..+.++.|.- ..
T Consensus 192 -ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 192 -GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred -ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 77899999998754 667889999999999999999999999999999 999998743 4577787765543 45
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (415)
..++|+|+++.+.+|+.|..+++||.......
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~l------------------------------------------------ 301 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRIL------------------------------------------------ 301 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEE------------------------------------------------
Confidence 67799999999999999999999998776532
Q ss_pred ccccccceEEEEeCC--CceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 345 YFSSEWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
+++|. +.+..+.|+|. ..|+.+++|-+||+=++
T Consensus 302 ----------yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 ----------YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ----------EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 33332 56778999997 77778888998887544
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-30 Score=230.81 Aligned_cols=278 Identities=18% Similarity=0.263 Sum_probs=228.7
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|.++|.+++|+|++++|++++ ++.+++|++.+.+.... +..+...+..+.|.+++..+++++.+ +.|++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i 77 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSD-----KTIRL 77 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCC-----CeEEE
Confidence 458999999999999999999999 99999999987654333 33566677789999998788888777 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
|++.+++.+..+. +...+.++.|++++.+++ . ++.|++||+.+++....+..+.. .+.++.+++++.++++ +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~ 154 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--WVNSVAFSPDGTFVAS-SS 154 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC--cEEEEEEcCcCCEEEE-Ec
Confidence 9999888877777 777999999999977776 3 89999999998888888876665 4555556665666665 55
Q ss_pred ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
.++.|++|+.. .+.+..+..|...+.++.|+|+++.+++++.++. |++||+++++.+..+.. +...+.++.|+|++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~ 231 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG 231 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence 69999998876 5667778889999999999999999999999999 99999999988888865 67799999999999
Q ss_pred CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceE
Q 014977 274 QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFA 353 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (415)
.++++++.||.|++|++.+++...
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~-------------------------------------------------------- 255 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQ-------------------------------------------------------- 255 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEE--------------------------------------------------------
Confidence 999988889999999998765331
Q ss_pred EEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 354 QFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
.+.........+.|+++ +.+++++.||.+.+|+
T Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 11112234556789888 7888888899999984
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-30 Score=215.82 Aligned_cols=248 Identities=13% Similarity=0.171 Sum_probs=202.3
Q ss_pred ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977 31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS 109 (415)
Q Consensus 31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 109 (415)
.++.+. ....||...|..+..++||.+.++++ |+.+++||+.+++...+ |.+|...+.+++++++...+++++.|
T Consensus 51 ~~G~~~-r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn~qivSGSrD- 126 (315)
T KOG0279|consen 51 KYGVPV-RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDNRQIVSGSRD- 126 (315)
T ss_pred ccCcee-eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE--EEecCCceEEEEecCCCceeecCCCc-
Confidence 344433 34678999999999999999999999 99999999998755444 55999999999999999999999998
Q ss_pred CCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 110 QYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
++|++|++.. .+..++. +...|.++.|+|+ ..+++ .|++|++||+++.+..+.+.+|...+ ..+.
T Consensus 127 ----kTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~ 199 (315)
T KOG0279|consen 127 ----KTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVT 199 (315)
T ss_pred ----ceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEE
Confidence 9999999654 4444444 3789999999998 56666 79999999999999999999998844 4555
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC--
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-- 259 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-- 259 (415)
.+|+|.+.++ |+.||.+.+|+.+...-.....|...|.+++|+|+.-.|+.+.. .. |+|||+.++..+..++...
T Consensus 200 vSpDGslcas-Ggkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~s-IkIwdl~~~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 200 VSPDGSLCAS-GGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TS-IKIWDLESKAVVEELKLDGIG 276 (315)
T ss_pred ECCCCCEEec-CCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-Cc-eEEEeccchhhhhhccccccc
Confidence 5566767765 88999999999887665556678999999999999877766654 45 9999999998776664310
Q ss_pred -----CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 260 -----DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 260 -----~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
......+++|++||+.|++|-.|+.|++|.+..
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 122457789999999999999999999999864
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.6e-30 Score=228.67 Aligned_cols=285 Identities=15% Similarity=0.137 Sum_probs=225.3
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe-ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....|..-|+++.|+|||.+||+.+ ||.+.+||-.+++++.... -..|...|.++.|+||...+++.+.| .++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt~ 259 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KTI 259 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ceE
Confidence 3577999999999999999999988 9999999999888766543 23788899999999999999999988 999
Q ss_pred EEEECCCCCEEEEEEcc----CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 117 IIWDDHQSRCIGEFAFR----SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~----~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+|||+.+.++++++... .....+.|..+..+.+ .+|.|.+++..+...++.+.+|...++.+ ..++++.+|.+
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL--tv~~d~~~i~S 337 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL--TVSPDGKTIYS 337 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE--EEcCCCCEEEe
Confidence 99999999999999843 3344555665555545 89999999999888888888888744444 44444455543
Q ss_pred eCCccCeEEEEEcC------------------------------------------------------------------
Q 014977 192 PGLQRGQVRIEHFG------------------------------------------------------------------ 205 (415)
Q Consensus 192 ~g~~dg~v~i~~~~------------------------------------------------------------------ 205 (415)
|+.||.|.-|+..
T Consensus 338 -gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 338 -GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred -eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 6666666555432
Q ss_pred ---------------------------------------------------------C---cceEEEecCccceEEEEeC
Q 014977 206 ---------------------------------------------------------L---NMIKLINAHDSHIACFTLT 225 (415)
Q Consensus 206 ---------------------------------------------------------~---~~~~~~~~~~~~i~~l~~s 225 (415)
+ .....+..|.++|+++++|
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 1 1112344688899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCC
Q 014977 226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST 305 (415)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 305 (415)
||+.+||++...+. +.+||+.+.+. ..-....|.+.|.+++|+|+..++|+|+.|..|.||+++.+.+...+.+.
T Consensus 497 pd~~yla~~Da~rk-vv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA--- 571 (603)
T KOG0318|consen 497 PDGAYLAAGDASRK-VVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA--- 571 (603)
T ss_pred CCCcEEEEeccCCc-EEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc---
Confidence 99999999999999 99999988876 33333348899999999999999999999999999999988753211111
Q ss_pred CCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEE
Q 014977 306 PSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRC 385 (415)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~ 385 (415)
+...++.+.|-.++.++.+|.|..+.+|
T Consensus 572 ----------------------------------------------------H~~gVn~v~wlde~tvvSsG~Da~iK~W 599 (603)
T KOG0318|consen 572 ----------------------------------------------------HLGGVNSVAWLDESTVVSSGQDANIKVW 599 (603)
T ss_pred ----------------------------------------------------cccCceeEEEecCceEEeccCcceeEEe
Confidence 1134778999999999999999999999
Q ss_pred EEe
Q 014977 386 SFD 388 (415)
Q Consensus 386 ~~~ 388 (415)
++.
T Consensus 600 ~v~ 602 (603)
T KOG0318|consen 600 NVT 602 (603)
T ss_pred ccc
Confidence 875
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=6.4e-30 Score=213.35 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=203.9
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--c--eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--K--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
+-....|..++|+|.|+++|+|+ |+...||++.+. + ....+.+.+|...+.+..|-+|+.++.+.++ .+
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~T 167 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MT 167 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ce
Confidence 33456799999999999999999 999999999743 1 2344557789999999999998777666554 89
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
..+||+++++.+..+. |.+.|.++.++| +++.++ -|+..++||++.+.+++.|.+|...+..++|.|++ .-++
T Consensus 168 CalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G--~afa 245 (343)
T KOG0286|consen 168 CALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG--DAFA 245 (343)
T ss_pred EEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC--Ceee
Confidence 9999999999999998 999999999999 888777 69999999999999999999999977777776655 4565
Q ss_pred EeCCccCeEEEEEcCCcc-eEEEe--cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 191 CPGLQRGQVRIEHFGLNM-IKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~~-~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
+|++|++.++++++... +..+. ....+|++++||-.|++|++|..|.+ +.+||.-.++.+..+.+ |++.|.++
T Consensus 246 -tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvScl 321 (343)
T KOG0286|consen 246 -TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSCL 321 (343)
T ss_pred -ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEEE
Confidence 49999999998877643 44443 22467999999999999999999999 99999999999999998 89999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEE
Q 014977 268 ALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd 289 (415)
..+|||.-+++|+.|.+++||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999999999994
No 19
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.6e-30 Score=213.64 Aligned_cols=247 Identities=17% Similarity=0.183 Sum_probs=204.0
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~ 115 (415)
....+|...|.+++|+.+|..|++|+ |+.+.+|+++...........+|...+..++|++ +...+++++.| ..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d-----k~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD-----KT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC-----ce
Confidence 56788999999999999999999999 9999999999876555555567888888888886 34555666555 99
Q ss_pred EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
|++||++.+++...+.....-.-+.|+|+|.+++ .|..|...|.++.+.....+... ....+.++.++.+++.+
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~---e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF---EVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc---eeeeeeecCCCCEEEEe
Confidence 9999999999999999777667789999998888 68889999998887776654333 23334443333344332
Q ss_pred CCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 193 GLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 193 g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
...|.|.| --...+++..+++|.....+|.|+|+|++||+|+.|.. +.+||+...-+++.+.. +.-+|..+.||.
T Consensus 166 -~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~ 241 (313)
T KOG1407|consen 166 -NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSH 241 (313)
T ss_pred -cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEecc
Confidence 24689998 23467899999999999999999999999999999999 99999998888888888 788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccC
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
||++||+|++|..|-|=++++|.+.
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred CcceeeccCccceEEeEecccCCeE
Confidence 9999999999999999999999854
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=2.7e-30 Score=221.05 Aligned_cols=291 Identities=17% Similarity=0.189 Sum_probs=240.6
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|.+.|.|+++.|.+++|++|+ |++++|||+.+++.... +.+|-..+..+++++...++.+++.| +.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHpYlFs~ged-----k~ 216 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHPYLFSAGED-----KQ 216 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchhheeeeeeecccCceEEEecCC-----Ce
Confidence 355689999999999999999999999 99999999999775554 55888899999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
|+.||++..+.++.+. |-..|.+++.+|.-..++ .|.+++|||+++...+..+.+|..++..+.+.+.. ..++
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--pqvi- 293 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--PQVI- 293 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC--CceE-
Confidence 9999999999999887 899999999999887777 79999999999999999999999977655554422 2344
Q ss_pred eCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 192 ~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
+|+.|++|++|+.. ++....+..|...+.+++.+|....+|+++.|. |+-|++..|..+..+.+ |.+-|+.++..
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~n 369 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVN 369 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeec
Confidence 58999999998866 566778899999999999999999999999885 99999999999999888 88899999998
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
.|| ++++|++.|.|.+||.+++-+-+..... ++|-.+.++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------------------------vqpGSl~sE- 409 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------------------------VQPGSLESE- 409 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCccccccccc--------------------------------------ccCCccccc-
Confidence 876 6778999999999999998754211000 111111111
Q ss_pred ceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecC
Q 014977 351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~ 390 (415)
.....++|-.. .+|+++..|-+|.+|.-|+.
T Consensus 410 ---------agI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 410 ---------AGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ---------cceeEEeecccCceEEeccCCcceEEEecccc
Confidence 22344556544 88999999999999998874
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=9.4e-30 Score=243.16 Aligned_cols=247 Identities=17% Similarity=0.264 Sum_probs=209.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.|...|.++.|+++|+.|++++ ++.+++|+...........+.+|...|..+.|++++.++++++.| ++|++||
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-----~tiriwd 231 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-----KTLRIWD 231 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-----ceEEEee
Confidence 3478999999999999999998 999999999665422233345899999999999999999999998 9999999
Q ss_pred C-CCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 121 D-HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 121 ~-~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
+ ..+..++++. |...|++++|+|++++++ .|++|+|||+++++++..+.+|... +.++++.+++.+|++ ++.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s-~s~ 308 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVS-ASY 308 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEE-cCC
Confidence 9 5558888887 999999999999997777 7999999999999999999999984 455566666778876 578
Q ss_pred cCeEEEEEcCCcc---eEEEecCccc--eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-ccEEEEEe
Q 014977 196 RGQVRIEHFGLNM---IKLINAHDSH--IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIAL 269 (415)
Q Consensus 196 dg~v~i~~~~~~~---~~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~~ 269 (415)
|+.|++|+..... ...+..+... ++.+.|+|++.+|++++.|+. +++||+..+..+..+..+... ..+.+...
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecccc
Confidence 9999999988766 4566666555 999999999999999999999 999999999999888884222 14555666
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
++.+.++++|+.|+.|++|++.++....
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 8899999999999999999999976543
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.2e-29 Score=207.09 Aligned_cols=286 Identities=12% Similarity=0.177 Sum_probs=226.4
Q ss_pred CccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccC-CceeEEEec-cCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP-FKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.....+|++.|..++|+|- |..||+++ |+.|+||+... .....+..+ ..|...+.+++|+|.+.+|++++.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---- 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---- 82 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc----
Confidence 3457899999999999998 89999999 99999999984 222233223 3678889999999999999999998
Q ss_pred CCeEEEEECCCC--CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecC
Q 014977 113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 113 ~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
.++.||.-..+ +++..++ |...|.+++|+++|.+++ .|..|-||.+. ..++...++.|...+..+.++|.
T Consensus 83 -~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 83 -ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred -ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 99999986544 6677777 999999999999999999 79999999985 34678888999987777777775
Q ss_pred CCceEEEEeCCccCeEEEEEcC-C---cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977 184 SSTSVLACPGLQRGQVRIEHFG-L---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~-~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (415)
.+ +|+ +++.|.+|++|... . .++.++.+|...|.+++|++.|..|++++.|++ ++||-..+ .+.. .
T Consensus 162 ~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~-~ 231 (312)
T KOG0645|consen 162 ED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG-M 231 (312)
T ss_pred cc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch-h
Confidence 44 555 58899999996544 2 578999999999999999999999999999999 99998652 2222 2
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
|...+..+.|. ...|++++.|+.|++|.-...-.. ..++.+.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~------------------------------------p~~~l~~ 273 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE------------------------------------PSWNLLA 273 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCC------------------------------------chHHHHH
Confidence 66789999998 457999999999999987732111 1111111
Q ss_pred cccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEe
Q 014977 340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~ 388 (415)
. .-...+..++.++|.|. ++|++++.||.+.+|++.
T Consensus 274 ~-------------~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 K-------------KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred h-------------hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0 11223346678999994 999999999999999874
No 23
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-30 Score=241.92 Aligned_cols=293 Identities=11% Similarity=0.186 Sum_probs=248.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.....|..++|+|...++.++- .|.|++||..-...+ ..|..|...+..+.|+++.-++++|++| ..|+||+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFdeHdGpVRgv~FH~~qplFVSGGDD-----ykIkVWn 79 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVWN 79 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhhccCCccceeeecCCCCeEEecCCc-----cEEEEEe
Confidence 3466799999999999999999 999999999854433 3366899999999999999999999998 9999999
Q ss_pred CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
.++.+++.++. |-..|+.+.|++.-.+++ .|.+|+||+..+++++..+.+|.+ .++|..++|...++++ ++.|
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVS-aSLD 156 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVS-ASLD 156 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEE-eccc
Confidence 99999999987 999999999999999988 689999999999999999999998 7777777776556654 8899
Q ss_pred CeEEEEEcCCc------------------------------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 197 GQVRIEHFGLN------------------------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 197 g~v~i~~~~~~------------------------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
.+|++|+..+- ....+.+|...|+-++|+|.-.++++|+.|.. |++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence 99999998650 12456799999999999999999999999999 999998
Q ss_pred CCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977 247 VDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (415)
Q Consensus 247 ~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (415)
...+. +.+.++ |.+.|.++-|+|...+|++.++|++|+|||+.+.+..
T Consensus 236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v---------------------------- 285 (1202)
T KOG0292|consen 236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV---------------------------- 285 (1202)
T ss_pred ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEecccccce----------------------------
Confidence 65543 345566 8889999999999999999999999999999887744
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeec
Q 014977 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRF 403 (415)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 403 (415)
.+|+-..+--.+++.+|+-.+++++.|+-+.+|.++.+...-|+-....-|
T Consensus 286 ----------------------------~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfY 336 (1202)
T KOG0292|consen 286 ----------------------------QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFY 336 (1202)
T ss_pred ----------------------------eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEE
Confidence 355555566678899999999999999999999999766555554333333
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.5e-30 Score=226.92 Aligned_cols=280 Identities=18% Similarity=0.251 Sum_probs=227.5
Q ss_pred CCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccC------CceeEEEec------cCCCeeEEEEeeeCCeEEEEecC
Q 014977 41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEP------FKETFRRDL------KSGGFRIVEMLFRCNILALVGAG 106 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~ 106 (415)
.+|+.+|.+.+|+|-.. .|++|+ +-+.++|++.. .+..++..+ ......++++.|+.+|.+|++|.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999776 889988 99999999963 111111111 12345789999999999999999
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
.+ |.+++|+ ..|..+.++. |+++|.++.|+.+|.+++ .|+++.+||..++...+.+..|..+ ...+.|
T Consensus 255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW 326 (524)
T KOG0273|consen 255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDW 326 (524)
T ss_pred cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEE
Confidence 98 9999999 5677777776 999999999999999998 6999999999999999999888764 233444
Q ss_pred CCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977 183 HSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (415)
-.+.. +++ ++.|+.|+++.. ...++.++.+|.+.|.++.|+|.|.+|++++.|++ ++||..........+.. |.
T Consensus 327 ~~~~~-F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs 401 (524)
T KOG0273|consen 327 QSNDE-FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS 401 (524)
T ss_pred ecCce-Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence 43333 444 568999999554 45788999999999999999999999999999999 99999988888888888 88
Q ss_pred ccEEEEEeCCCC---------CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCC
Q 014977 262 AEIYSIALSPNV---------QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332 (415)
Q Consensus 262 ~~v~~l~~spdg---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (415)
..|..+.|+|+| ..|++++.|++|++||+..+.+..
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----------------------------------- 446 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----------------------------------- 446 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-----------------------------------
Confidence 899999999975 479999999999999999998653
Q ss_pred CcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.|.-...+++.++|+|+ ..++.++-||.|.+|+...
T Consensus 447 ---------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 447 ---------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ---------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 22222357788999999 5555555599999998875
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.8e-29 Score=253.04 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=194.3
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce------eEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE------TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQY 111 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~ 111 (415)
...|...|.+++|+|+|++||+|+ |+.|+||++..... .....+ .+...+.++.|++ .+..+++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D--- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE--- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC---
Confidence 345899999999999999999999 99999999753110 011112 2344677788876 46778888887
Q ss_pred CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC-CC
Q 014977 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH-SS 185 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 185 (415)
+.|++||+.+++.+..+. |...|.+++|+| ++.+++ .|+.|++||+.+++.+..+..+. .+.++.+. ++
T Consensus 555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~ 629 (793)
T PLN00181 555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---NICCVQFPSES 629 (793)
T ss_pred --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---CeEEEEEeCCC
Confidence 999999999999888887 899999999996 666665 69999999999988888876543 34555553 34
Q ss_pred ceEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEec
Q 014977 186 TSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRR 257 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~ 257 (415)
+.++++ |+.||.|++|+.+.. .+..+.+|...|.++.|. ++.+|++++.|+. |+|||+..+ +.+..+.+
T Consensus 630 g~~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 630 GRSLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred CCEEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence 666765 779999999998653 456778999999999997 7789999999999 999999743 56777877
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|...+..++|+|++.+|++|+.|+.|++|+...+.
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 77889999999999999999999999999976553
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5.7e-29 Score=203.20 Aligned_cols=263 Identities=17% Similarity=0.222 Sum_probs=209.9
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE-c
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-F 132 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~ 132 (415)
-+|++++ |.+||+|...++..... ++.....+..+...|+...|+.++. ..|++||+.++. ++.++. |
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT--iqh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT--IQHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE--EecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEecc
Confidence 3788888 99999999998765444 4466778889999999999999887 799999998875 577777 8
Q ss_pred cCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-c
Q 014977 133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-M 208 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~ 208 (415)
...|+++.|..+|+.+. .||+++|||++...+.+.+. +..++..+.++++ ...|++ |..+|.|++|+.... +
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis-~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELIS-GDQSGNIRVWDLGENSC 158 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEe-ecCCCcEEEEEccCCcc
Confidence 89999999999999999 79999999999866665554 3465666666655 334544 889999999998765 3
Q ss_pred eEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977 209 IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 209 ~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
... +......|.++...|||.+|+.+...|. .++|++-.. +++.+++. |.+.+..+.+|||+++||+++.
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecC
Confidence 333 3445678999999999999999999999 999998664 35566777 8889999999999999999999
Q ss_pred CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 014977 282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT 361 (415)
Q Consensus 282 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (415)
|.+++||++++--+.+. ..+-...-
T Consensus 236 dktv~iwn~~~~~kle~-------------------------------------------------------~l~gh~rW 260 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLEL-------------------------------------------------------VLTGHQRW 260 (311)
T ss_pred CceEEEEecCCceeeEE-------------------------------------------------------EeecCCce
Confidence 99999999887622110 11111134
Q ss_pred eEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 362 ~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+..|+|+.+ ..|+++++|+.+++|.+..
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeeccccc
Confidence 567999999 7788888899999999876
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=5.9e-31 Score=228.59 Aligned_cols=239 Identities=14% Similarity=0.233 Sum_probs=202.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.-+..|..+.|.|+|+.|++|+ .|.+.+|+..... ++..++.|...|.++.|+.++.++++++.+ |.|++|+
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWq 166 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQ 166 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEEcCCC-----ceEEecc
Confidence 3456899999999999999999 9999999985432 333346899999999999999999999998 9999999
Q ss_pred CCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 121 DHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 121 ~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
..-.. ++.+. |...|++++|+|+...++ .|+.|+|||....+....+.+|.-.+. ++.|+|...+|++ |+.
T Consensus 167 pnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk--svdWHP~kgLias-gsk 242 (464)
T KOG0284|consen 167 PNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK--SVDWHPTKGLIAS-GSK 242 (464)
T ss_pred cchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc--eeccCCccceeEE-ccC
Confidence 65443 33343 569999999999766666 799999999988888888888887444 5555665556665 889
Q ss_pred cCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CC
Q 014977 196 RGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NV 273 (415)
Q Consensus 196 dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg 273 (415)
|..|++|+. ++.++.++.+|+..|..+.|+|++++|++++.|.. ++++|+++.+.++.+++ |...|+++.|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeeccccccc
Confidence 999999775 56889999999999999999999999999999999 99999998999999998 889999999999 45
Q ss_pred CEEEEEeCCCeEEEEEceecc
Q 014977 274 QWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+|.+|+.||.|..|.+...+
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred cceeeccCCCceEEEeccccc
Confidence 688899999999999998444
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.5e-31 Score=232.60 Aligned_cols=283 Identities=14% Similarity=0.181 Sum_probs=232.3
Q ss_pred ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
....+|...|.++.|.| .+.+|++++ |+.|+||++-..+.++ +.+.+|...|.++.|+.++..+.+++.| +.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-rtf~gH~k~Vrd~~~s~~g~~fLS~sfD-----~~ 281 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-RTFKGHRKPVRDASFNNCGTSFLSASFD-----RF 281 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-hhhhcchhhhhhhhccccCCeeeeeecc-----ee
Confidence 45689999999999999 888889988 9999999998745444 4566999999999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEEccCceeEEEEcCCe-EEE-E--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDR-IVV-V--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
|++||+++|+++..+.....+.++.|+|++ ..+ + .|+.|+.||+++++.++.+..|-. .+..+.+-+++..+++
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--AILDITFVDEGRRFIS 359 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh--heeeeEEccCCceEee
Confidence 999999999999999999999999999988 333 3 799999999999999999988877 5556666667777776
Q ss_pred eCCccCeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---cEEEEEecCCCcccEEE
Q 014977 192 PGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v~~ 266 (415)
.++|+.++||..+......+ ..+.....++..+|++.+++.-+.|.. |.+|.+... ...+.+.++.-.+.-..
T Consensus 360 -sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 360 -SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred -eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceee
Confidence 56899999998876544333 233445668999999999999999999 999986532 22345666444556678
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
+.|||||.+|++|..||.+.+||.++-+...
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~------------------------------------------------- 468 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS------------------------------------------------- 468 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhh-------------------------------------------------
Confidence 9999999999999999999999999987543
Q ss_pred ccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEE
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~ 386 (415)
+++.+++....+.|+|. ..+++++-||.|++|.
T Consensus 469 -------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 -------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 33444455666889997 8888888899999984
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=229.28 Aligned_cols=246 Identities=16% Similarity=0.196 Sum_probs=205.7
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|++++++|||+++|+|. ||.|+|||...+-+.. +|..|...+..+.|+..+..+++.+-| |+|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLD-----GtVR 417 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLD-----GTVR 417 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE--EeccCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence 4678999999999999999999999 9999999998755444 466999999999999999999999998 9999
Q ss_pred EEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
.||+...+..+++..+ ....+++..|.|.+++ ..-.|++|++++|+.+..+.+|..|+..+++++. +..|++
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~--~~~LaS 495 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD--GSLLAS 495 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc--cCeEEe
Confidence 9999999999999854 4556788888899888 2346999999999999999999997766666555 456665
Q ss_pred eCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------------
Q 014977 192 PGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------------ 257 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------------ 257 (415)
|+.|.+|++|+.-.. .+.++ .+...+..++|+|+|+.||++..||. |.+||.+.+..+..+.+
T Consensus 496 -~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 496 -GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred -ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence 899999999986544 44444 36778899999999999999999999 99999987655533322
Q ss_pred ------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 258 ------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 258 ------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.......+.+++++||..|++|+..+.|.||++.++.-.
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 112246889999999999999999999999999988643
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=218.85 Aligned_cols=244 Identities=11% Similarity=0.203 Sum_probs=217.6
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|.+.|..++|+..|++||+++ |-.+++||.+......+ .+.+|...+.++.|-|.+..+++++.| .+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-s~~gh~h~vS~V~f~P~gd~ilS~srD-----~t 216 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-SLIGHEHGVSSVFFLPLGDHILSCSRD-----NT 216 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-HhcCcccceeeEEEEecCCeeeecccc-----cc
Confidence 455789999999999999999999999 77799999987433332 344888899999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-------
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS------- 184 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 184 (415)
|+.|++.+|.++.++. |...|..++.+.||.+++ .|.++++|-+.++++...+..|..++.++++++..
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 9999999999999998 899999999999999999 68999999999999988999999988888777532
Q ss_pred -----C-ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 185 -----S-TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 185 -----~-~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+ +.++ .+++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++++++..
T Consensus 297 at~~~~~~~~l-~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 297 ATGSTNGGQVL-GSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA 374 (406)
T ss_pred ccCCCCCccEE-EeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence 1 2344 458999999998875 5788999999999999999999999999999999 99999999999999997
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
|..-|+++.|+.+-.++++|+-|.++++|.-
T Consensus 375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7779999999999999999999999999974
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.9e-28 Score=217.41 Aligned_cols=287 Identities=14% Similarity=0.195 Sum_probs=219.9
Q ss_pred CCcccccccCCC-CCCCCCCCCcccccc----cccCC-CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC
Q 014977 3 STVSTSREILPP-GPFGSPNAGASASAS----ASFGH-PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF 75 (415)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~ 75 (415)
+.|+++|+.... |+-+..+.-..+-.. ..... .....-.+|..+++-..|+|.|.++|+|. .|.||||+....
T Consensus 12 ~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~ 91 (603)
T KOG0318|consen 12 SLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK 91 (603)
T ss_pred CCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc
Confidence 567788887665 322222221111111 11111 12456689999999999999999999999 999999999876
Q ss_pred ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----e
Q 014977 76 KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----L 150 (415)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~ 150 (415)
+.+++.+++.-...+.++.|+.++..++..++... .-|.+.+|| +|..+.++. |...|+++.|-|...+-+ .
T Consensus 92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre-rfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd 168 (603)
T KOG0318|consen 92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE-RFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSD 168 (603)
T ss_pred ceeeeeeeeecccccccceeCCCCcEEEEEecCcc-ceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccC
Confidence 77777777777788899999998876665554311 125667776 787888888 899999999999876544 7
Q ss_pred CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEe---cCccceEEEEeCC
Q 014977 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN---AHDSHIACFTLTL 226 (415)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~---~~~~~i~~l~~sp 226 (415)
|+.|.+|+=...+-...+..|.+ .+.++.++|++..++++| .||++.+++ .+++.+..+. +|++.|.+++|+|
T Consensus 169 Dn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRysPDG~~Fat~g-sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 169 DNTVAFFEGPPFKFKSSFREHSK--FVNCVRYSPDGSRFATAG-SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred CCeEEEeeCCCeeeeeccccccc--ceeeEEECCCCCeEEEec-CCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 99999999777777777788887 455556666688888765 799999955 5677788887 8999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCcEEEEEec-----------------------------------------CCCcccEE
Q 014977 227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRR-----------------------------------------GVDRAEIY 265 (415)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-----------------------------------------~~~~~~v~ 265 (415)
|++.+++++.|.+ ++|||+.+.+++.++.. ..|...|+
T Consensus 246 Ds~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 246 DSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred CCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 9999999999999 99999987554433221 12677899
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
++..+||+++|++|+.||.|.-|+..++...
T Consensus 325 aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 9999999999999999999999999988754
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.9e-29 Score=200.83 Aligned_cols=245 Identities=14% Similarity=0.230 Sum_probs=204.2
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
+.....|+++|.++.|+-||++.++++ |.+|++|+...+..+ ++..+|+..+.+...+.+...+++++.| ..
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgD-----k~ 82 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGD-----KA 82 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeecCCCceeeeccccccccccccCCCC-----ce
Confidence 344678999999999999999998888 999999998765443 3455889999999999999999999988 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC--ceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
+.+||+.+|+.++.+. |.+.|+.++|+.+...++ .|..+++||.+. .++++.+..... .+..+..... .|
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v~~h--eI 158 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDVAEH--EI 158 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--ceeEEEeccc--EE
Confidence 9999999999999998 999999999999999888 699999999964 577887876666 4444444332 33
Q ss_pred EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
.+|+.||+++.++.+...... .-...+|+++.|+++|+.+++++.|++ +++.|-.+|+.+..++++.....-...++
T Consensus 159 -vaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 159 -VAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred -EeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeee
Confidence 359999999997776544332 223568999999999999999999999 99999999999999999544455567788
Q ss_pred CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+....++++|++||.|++||+.....
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cccceeEEeccCCceEEEEEecccee
Confidence 88889999999999999999988764
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-29 Score=226.99 Aligned_cols=245 Identities=12% Similarity=0.174 Sum_probs=211.7
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
...+.+.|.++.|+|...+++++- +|.|.||+.++...+. .++-....+.+..|-.....+++|++| ..|+|
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk--sfeV~~~PvRa~kfiaRknWiv~GsDD-----~~IrV 81 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK--SFEVSEVPVRAAKFIARKNWIVTGSDD-----MQIRV 81 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee--eeeecccchhhheeeeccceEEEecCC-----ceEEE
Confidence 344889999999999999999988 9999999999755443 454667778888888889999999998 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
|+..+++.+..+. |...|++++.+|...+++ .|-.|++||.+.. .+.+++.+|.+ .++.++++|+..--.+++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKDPNTFASA 159 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCCccceeee
Confidence 9999999999999 999999999999999888 6889999999764 67788999998 455555554433233358
Q ss_pred CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCC--CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
+.|++|++|.... .+..++++|...|+++.+-+-| .+|++|+.|.. |+|||.++..+++++.+ |...|..+.|+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fh 236 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFH 236 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEec
Confidence 8999999998765 5678899999999999998755 59999999999 99999999999999999 77899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccC
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|.=.++++|++||+++||+-.+-+..
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehh
Confidence 99999999999999999998887644
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=217.82 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=235.6
Q ss_pred CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...+....|.+.|+-+.||++|++||+++ |.+..||.+..... .+..++.+|...|..+.|+||..++++++.+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~---- 290 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD---- 290 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch----
Confidence 34456789999999999999999999999 99999999865433 3445566899999999999999999999987
Q ss_pred CCeEEEEECCCCCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 113 PTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..+.+||+.+|.....+.+ ...+.+.+|.||+..++ .|+++..||+. |+.+...++-.. ..+.+++..++|+
T Consensus 291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGK 367 (519)
T ss_pred -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCc
Confidence 8899999999999988884 58899999999998887 69999999975 444444443322 2456666666777
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
+++..+ .|..|++++.....-+.+..-..+|+++.+|.+|+++++.=.+.. |++||++..+.+..+.++....-+..-
T Consensus 368 ~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 368 YVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred EEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEe
Confidence 777655 789999988776665545556789999999999999999888999 999999988888888885444455566
Q ss_pred EeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 268 ALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 268 ~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
+|-. +..++++|++|+.|+||+..+++...+++.|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-------------------------------------------- 481 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-------------------------------------------- 481 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--------------------------------------------
Confidence 6764 5589999999999999999999976655555
Q ss_pred ccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~ 389 (415)
...+++++|.|. ..++.++.||+|+||...+
T Consensus 482 ------------s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 482 ------------SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------------cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 146778999997 7899999999999998765
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.2e-28 Score=209.93 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=206.3
Q ss_pred CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
.+....+|++.|+++.|+.||.+||+|. +|.|+||+..++....... .....+.-+.|+|...+|+.|+.| |
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WHp~a~illAG~~D-----G 170 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWHPRAHILLAGSTD-----G 170 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEecccccEEEeecCC-----C
Confidence 4567899999999999999999999999 9999999999876655432 455667788999999999999998 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC-Cc--------------
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-LR-------------- 175 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~-~~-------------- 175 (415)
.+.+|.+.++...+.+. |..++++=.|.|+|+.++ .|++|++|++.+++++..+..... +.
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99999999977777777 899999999999999988 799999999999988877752110 00
Q ss_pred ----c------------eEEEe--------------------cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccce
Q 014977 176 ----G------------LCCLS--------------------HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI 219 (415)
Q Consensus 176 ----~------------~~~~~--------------------~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i 219 (415)
. +.+.. +.....-|++.|+.||+|.||+.....++.+-.|...|
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V 330 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV 330 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence 0 00000 11111124445889999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+ |...|.+++++|+++++++++.|++.+||++.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999998 778999999999 99999999999999999 88899999999999999999999999999875
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=8.6e-29 Score=231.88 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=206.6
Q ss_pred EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-------------------------------EEE-
Q 014977 81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------------------------------CIG- 128 (415)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-------------------------------~~~- 128 (415)
.+++.....+.+..|+++...+|.|-.| ..|++|.+...+ ...
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 3344666778888899999988888777 999999876311 112
Q ss_pred EEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977 129 EFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG 205 (415)
Q Consensus 129 ~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~ 205 (415)
.+.|.++|....|+|+.++++ .|+++++|.+.+..++..+.+|..|++.+.|+ |.|.++|+ ++.|++.++|...
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFat-as~D~tArLWs~d 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFAT-ASHDQTARLWSTD 523 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEe-cCCCceeeeeecc
Confidence 223889999999999999999 68999999999999999999999988777766 56778876 6899999999865
Q ss_pred C-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 206 L-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 206 ~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
. .+.+.+.+|.+.|.|+.|+|+..|+++||.|.+ |++||+.+|..++.|.+ |.++|.+++|||+|++|++|+.||.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCc
Confidence 4 678889999999999999999999999999999 99999999999999998 9999999999999999999999999
Q ss_pred EEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 014977 285 VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI 364 (415)
Q Consensus 285 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (415)
|++||+.+++...+... ..+.++.
T Consensus 601 I~iWDl~~~~~v~~l~~--------------------------------------------------------Ht~ti~S 624 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKG--------------------------------------------------------HTGTIYS 624 (707)
T ss_pred EEEEEcCCCcchhhhhc--------------------------------------------------------ccCceeE
Confidence 99999999885432111 1367788
Q ss_pred EEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977 365 AAFGSQ-NTVVIVSMDGSFYRCSFDPVH 391 (415)
Q Consensus 365 ~~~~~~-~~i~~~~~dg~~~~~~~~~~~ 391 (415)
+.|+.+ +.++++|.|..|.+|.+....
T Consensus 625 lsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999998 777778889999999887643
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=223.96 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=210.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....|+.+|.++.|+++|.++++|+ +|.|++|+..-..... +. .+...|.+++|+|+...++++++| |.|
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---~~ahh~eaIRdlafSpnDskF~t~SdD-----g~i 204 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---IQAHHAEAIRDLAFSPNDSKFLTCSDD-----GTI 204 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH---hhHhhhhhhheeccCCCCceeEEecCC-----CeE
Confidence 4578999999999999999999999 9999999976422211 22 344889999999999999999998 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
+|||....+....+. |...|.+++|+|..-+++ .|+.|++||.+++.++.++..|.+ .++++.+++++.+|++
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt- 281 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLT- 281 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEE-
Confidence 999998888877777 899999999999887777 688999999999999999999888 7777777778888876
Q ss_pred CCccCeEEEEEcC-CcceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
++.|..+++++.+ .+.++.+++|+..++++.|+| ...+|.+|+.||. |..|.+...+++..+... |...|++++|+
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~A-Hd~~iwsl~~h 359 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPPA-HDGEIWSLAYH 359 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCcc-cccceeeeecc
Confidence 7899999997776 788899999999999999999 4568999999999 999999867777666543 88999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEceec
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
|-|.+|++|+.|.++++|.-...
T Consensus 360 PlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccceeEeecCCCcceeeeccCCC
Confidence 99999999999999999986544
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.4e-29 Score=215.94 Aligned_cols=245 Identities=11% Similarity=0.220 Sum_probs=201.8
Q ss_pred ccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977 29 SASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 107 (415)
...+.+...+........|+|+.+. ...+++|. |++|+|||..+...... +.+|...+.++.|... .+++|+.
T Consensus 182 ~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~r--viisGSS 255 (499)
T KOG0281|consen 182 CGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDER--VIVSGSS 255 (499)
T ss_pred ccceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccce--EEEecCC
Confidence 3455566666677788899999985 45788999 99999999987655443 4489999999988765 8889998
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce---eeeEEeccCCCcceEEEec
Q 014977 108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 182 (415)
| .+|+|||+++|+++.++- |...|..+.|+..-...+ .|..|.+||+.... +.+.+.+|...+.++ .+
T Consensus 256 D-----sTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV--df 328 (499)
T KOG0281|consen 256 D-----STVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DF 328 (499)
T ss_pred C-----ceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee--cc
Confidence 8 999999999999999876 889999999987655555 79999999996543 334556777644444 44
Q ss_pred CCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (415)
+. +++++ ++.|.+|++|+.+ ...++++.+|+..|.|+.+ .|+++++|+.|.+ |++||+..|.+++.+++ |+
T Consensus 329 d~--kyIVs-ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HE 400 (499)
T KOG0281|consen 329 DD--KYIVS-ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HE 400 (499)
T ss_pred cc--ceEEE-ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hH
Confidence 43 36655 6789999999876 4778999999999999877 6899999999999 99999999999999999 88
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.-|.++.| |.+.|++|+.||+|+|||+.++...
T Consensus 401 eLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 401 ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred Hhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 89999999 4578999999999999999998754
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-27 Score=194.58 Aligned_cols=293 Identities=12% Similarity=0.115 Sum_probs=236.7
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|+.+++-+.|+.+|.+|.++. |....||-..+++.+-. +.+|...|.++..+.+...+++++.| .+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt--y~GHtGavW~~Did~~s~~liTGSAD-----~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT--YDGHTGAVWCCDIDWDSKHLITGSAD-----QTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee--ecCCCceEEEEEecCCcceeeecccc-----ceeE
Confidence 4678999999999999999999999 99999998877665544 44899999999999999999999998 9999
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE--------eCCeEEEEEcC-------CceeeeEEeccCCCcceEEEec
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFV-------DLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
+||+++|+.+..++...+|..+.|+.+|.+++ ..+.|.++|++ ..++...+..+.. .+...-|
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s--kit~a~W 155 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS--KITSALW 155 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--ceeeeee
Confidence 99999999999999999999999999998877 35679999997 3345666666665 4555566
Q ss_pred CCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (415)
.+-+.+|++ |..+|.|.+|+... +.+...+.|...|+.|.+++|..++++++.|.+ -++||..+.+.++++..
T Consensus 156 g~l~~~ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~t--- 230 (327)
T KOG0643|consen 156 GPLGETIIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTT--- 230 (327)
T ss_pred cccCCEEEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeee---
Confidence 666778876 88999999988775 455666789999999999999999999999999 99999999999999984
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccc
Q 014977 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG 340 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (415)
..+|++.+++|...+++.|+..... |+.+-..+ .++
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r-----------------------------------------~GK 266 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR-----------------------------------------AGK 266 (327)
T ss_pred cccccceecccccceEEecCCceee---eeeeeccc-----------------------------------------ccc
Confidence 5689999999988877776654322 33332211 112
Q ss_pred ccCccccc--ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 341 VLPKYFSS--EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 341 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+.+++|+- +..+.+++-..++.+.++|+|+ .....+|.||.|++.-++.
T Consensus 267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 33344432 5556778888899999999999 5566677799999998876
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=4e-27 Score=202.22 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=223.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
....|++.|.+++.+|+.+++++|+ |..-.||+..++..... +.+|...|+++.|+.++.+|++|+-+ |.|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms-----G~v~ 131 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS-----GKVL 131 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC-----ccEE
Confidence 4578999999999999999999999 99999999999885555 44999999999999999999999998 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
||+..++.....+. .-..|.-+.|+|.+.+++ .||.+.+|.+..+...+.+.+|..+...-.+.++ |+.+++ +
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--GKr~~t-g 208 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--GKRILT-G 208 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--CceEEE-E
Confidence 99999999888886 567788899999888877 7999999999998888899999886666666665 666665 7
Q ss_pred CccCeEEEEEcCC-cceEEEe---------------------------------------------------cCccceEE
Q 014977 194 LQRGQVRIEHFGL-NMIKLIN---------------------------------------------------AHDSHIAC 221 (415)
Q Consensus 194 ~~dg~v~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i~~ 221 (415)
..||+|++|+... +++..+. .+...+.+
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 8999999998653 2221111 11122223
Q ss_pred EEe---CCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977 222 FTL---TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED 298 (415)
Q Consensus 222 l~~---sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~ 298 (415)
+.+ +..-.+.|+|+.||+ |.|||+...++.+.+. |...|..+.|-+ ..+|++++.+|.|+.||.++|+...+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred hhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence 333 334457889999999 9999998888777666 788899999998 78999999999999999999986543
Q ss_pred CCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEE
Q 014977 299 SSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVS 377 (415)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 377 (415)
...| + ..+...+++++ +.|++++
T Consensus 364 y~GH--------------------------------------~------------------~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 364 YTGH--------------------------------------Q------------------MGILDFALSPQKRLVVTVS 387 (399)
T ss_pred EecC--------------------------------------c------------------hheeEEEEcCCCcEEEEec
Confidence 3333 1 23445678888 7777888
Q ss_pred eCCcEEEEEEe
Q 014977 378 MDGSFYRCSFD 388 (415)
Q Consensus 378 ~dg~~~~~~~~ 388 (415)
.|++.++|.++
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 89999999764
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=226.69 Aligned_cols=246 Identities=16% Similarity=0.252 Sum_probs=210.0
Q ss_pred CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
+.....+|...|..++|+|+++++++++ |++++|||+..... ..+.+.+|...+.+++|++++..+++++.| +
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~-~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~ 268 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR-NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----G 268 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe-EEEEecCCCCceEEEEecCCCCEEEEecCC-----C
Confidence 3444589999999999999999999999 99999999944333 334466999999999999999999999998 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCceE
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+|++||+++++++..+. |...|.+++|++++.+++ .|+.|++||+.++. ++..+..+.....+..+.+++++.+
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 99999999999999999 999999999999999998 69999999999988 5666766655423455666677778
Q ss_pred EEEeCCccCeEEEEEcC-CcceEEEecCccc---eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-ccc
Q 014977 189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAE 263 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~~ 263 (415)
++. +..|+.+++|+.. ......+.+|... +.+...++.++++++|+.|+. |++||+.++..+..+.+ | ...
T Consensus 349 ll~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~ 424 (456)
T KOG0266|consen 349 LLS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAA 424 (456)
T ss_pred EEE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCc
Confidence 876 6689999999987 6777888888764 344556789999999999999 99999999999989988 6 788
Q ss_pred EEEEEeCCCCCEEEEEe--CCCeEEEEEce
Q 014977 264 IYSIALSPNVQWLAVAS--DKGTVHIFSLR 291 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s--~dg~i~vwd~~ 291 (415)
+..+.++|...++++++ .|+.+++|..+
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999998 78899999754
No 42
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=9.9e-28 Score=214.30 Aligned_cols=284 Identities=14% Similarity=0.177 Sum_probs=208.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeE---EEeccCCCeeEEEEeeeCCe--EEEEecCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYP 112 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~ 112 (415)
...+|...|.++++.|.|.+|++|+ |-.|++||+....... +...+.....+..+.|++.+ .+++++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------ 235 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------ 235 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence 3467788999999999999999999 9999999997543222 21123445566777787755 3444443
Q ss_pred CCeEEEEECCCCCEEEEE--------------EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc-eeeeEEec---
Q 014977 113 PTKVIIWDDHQSRCIGEF--------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-KLLHQIET--- 170 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~--------------~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~-~~~~~~~~--- 170 (415)
...+|+| +.|..+.++ .|...+++.+|+|+.+-.+ .|+++++||+... +.++.+..
T Consensus 236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 6788888 444433332 1667889999999765433 7999999999654 33444432
Q ss_pred cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCcc--ceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977 171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIF 244 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (415)
....+.+...+|++++.+||+ |..||.|.+|+..... ...-.+|.. .|++|.||++|++|++-+.|++ +++|
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVW 391 (641)
T ss_pred CCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeee
Confidence 233455666778888888776 7899999999975532 333457876 8999999999999999999999 9999
Q ss_pred ECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC------CCeEEEEEceecccCCCCCCCCCCCCcccccccCCC
Q 014977 245 NTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS 317 (415)
Q Consensus 245 d~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (415)
|++.. +++....+-...-+-+.++|||+.++|++|+. .|++.+||..+-+..
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v--------------------- 450 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV--------------------- 450 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---------------------
Confidence 99865 45655555333446688999999999999875 467888887765532
Q ss_pred CCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.++.++...+..|.|+|. |+|++++.||.+++| +++
T Consensus 451 -----------------------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp 487 (641)
T KOG0772|consen 451 -----------------------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP 487 (641)
T ss_pred -----------------------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence 244455556777999999 999999999999999 555
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=219.98 Aligned_cols=281 Identities=13% Similarity=0.148 Sum_probs=227.1
Q ss_pred ccCCCCCCceEEEEEe-CCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWN-QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~s-p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.+..|..+.|..+.|- |+.++||+++ .+.+++|++.+.... .+++|...+.++....++.++++++.| ++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD-----~s 388 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKD-----KS 388 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCC-----ce
Confidence 4456788889999985 7788999999 899999988875543 345899999999866777999999998 99
Q ss_pred EEEEECCCCCE----EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee-----e----eEEeccCCCcce
Q 014977 116 VIIWDDHQSRC----IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-----L----HQIETLANLRGL 177 (415)
Q Consensus 116 i~vwd~~~~~~----~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~-----~----~~~~~~~~~~~~ 177 (415)
+++|.++++.. +.... |...|.+++++..+.-++ .|.++++|++...+. + .....|...+..
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 99998855432 33333 899999999987654333 799999999965211 1 122456776666
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
++++++ ..++| +|+.|.+.+||+.. .....++.+|...+.++.|+|..+.|+++|.|++ |+||.+.+..++++|.
T Consensus 469 Vaia~n--dkLiA-T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 469 VAIAPN--DKLIA-TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE 544 (775)
T ss_pred eEecCC--CceEE-ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec
Confidence 666665 44555 59999999998876 3567789999999999999999999999999999 9999999999999999
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccc
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS 336 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (415)
+ |...|..+.|-.+|+.|++++.||.|++|+++++++..++..|.+
T Consensus 545 G--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-------------------------------- 590 (775)
T KOG0319|consen 545 G--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-------------------------------- 590 (775)
T ss_pred C--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc--------------------------------
Confidence 9 899999999999999999999999999999999999876666633
Q ss_pred ccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
-+..++-++. +.+++++.||.|.+|.=.
T Consensus 591 ------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 591 ------------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred ------------------------eeEEEeecCccceeEecCCCeEEEEeecC
Confidence 2334555665 778889999999999644
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-25 Score=186.63 Aligned_cols=246 Identities=12% Similarity=0.170 Sum_probs=195.3
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+..+.|+++.|+++|.+|++++ |..++|||...+.+.....-+..+....++...++..+..+...| .+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----DTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----CceEE
Confidence 334678899999999999999988 889999999987766555444445556666655655555555445 89999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
.++.+.+.++.+. |...|.+|+.+|-+..++ .|++|++||++..++...+..... . ..+++|+|.++|+ +.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p--i~AfDp~GLifA~-~~ 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P--IAAFDPEGLIFAL-AN 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--c--ceeECCCCcEEEE-ec
Confidence 9999999999999 999999999999776666 799999999998888777655443 2 3456777877776 54
Q ss_pred ccCeEEEEEcCC---cceEEEe---cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc-cEEEE
Q 014977 195 QRGQVRIEHFGL---NMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYSI 267 (415)
Q Consensus 195 ~dg~v~i~~~~~---~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~l 267 (415)
..+.|++++.+. .+...+. +.....+.|.|+|||++|+.+...+. +++.|.-+|..+..+....... --...
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 555899977653 4444444 34677899999999999999999999 9999999999998888743333 22577
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|+||++++++|+.||+|.+|+++++.+.
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 89999999999999999999999988764
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1e-26 Score=194.94 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=200.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~ 117 (415)
..+|.++|..+.|.+|+..+++++ |.+|+.||.++++...+ ++.|..-+..+....-+ .++.++++| ++++
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD-----~t~k 158 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDD-----GTLK 158 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh--hccccceeeecCccccCCeEEEecCCC-----ceEE
Confidence 469999999999999999999988 99999999999877655 33666666666654444 566667776 9999
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
+||+++..+++++..+.+++++.|..++..+. -|+.|++||++....+..+.+|..++ ..++-+++|.++.. -+
T Consensus 159 l~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtI--t~lsls~~gs~lls-ns 235 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTI--TGLSLSRYGSFLLS-NS 235 (338)
T ss_pred EEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCce--eeEEeccCCCcccc-cc
Confidence 99999999999999899999999998876666 69999999999999999999999855 45555556667765 67
Q ss_pred ccCeEEEEEcCC-----cceEEEecCcc----ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 195 QRGQVRIEHFGL-----NMIKLINAHDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 195 ~dg~v~i~~~~~-----~~~~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
.|.++++|+.+. +++..+.+|.. ....++|+|++..+.+|+.|.. +++||..+...+..+.+ |.+.|.
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h~gsvn 312 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--HYGSVN 312 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--cceeEE
Confidence 999999998764 45777776643 3457899999999999999999 99999988899999998 899999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
+++|+|...+|.+++.|.+|++=++
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999999987443
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=8e-26 Score=203.42 Aligned_cols=239 Identities=19% Similarity=0.286 Sum_probs=202.2
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
.....|...+..+.|+|++++|++++ ++.+++|++...+.... +..+...+.++.|.+++.++++++.+ +.|
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i 117 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTI 117 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence 34567888999999999999999999 99999999987544433 33566688999999998888888766 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
.+||+.+++....+. |...+.++.|+|++.+++ . ++.|++||+.+++.+..+..+.. .+.++.+++++..+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~- 194 (289)
T cd00200 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLS- 194 (289)
T ss_pred EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc--ccceEEECCCcCEEEE-
Confidence 999999888888887 888999999999887777 3 99999999998888888887665 4455566666666666
Q ss_pred CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
++.++.|++|+... +.+..+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+.. |...|.+++|+|
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~ 271 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP 271 (289)
T ss_pred ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence 44599999998874 556666688899999999999999998888999 99999999998888886 777899999999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 014977 272 NVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd 289 (415)
++++|++++.||.|++|+
T Consensus 272 ~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCEEEEecCCCeEEecC
Confidence 999999999999999996
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-27 Score=221.06 Aligned_cols=241 Identities=15% Similarity=0.186 Sum_probs=188.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC----------------------------ce-eE------------
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------------------KE-TF------------ 79 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~----------------------------~~-~~------------ 79 (415)
.|.+.|+++.|++||+|||+|+ |+.|+||.+... .. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999 999999987540 00 00
Q ss_pred -----------------EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc
Q 014977 80 -----------------RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS 142 (415)
Q Consensus 80 -----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~ 142 (415)
...+.+|...|+++.|+.++.+|.+ +.| .+|++|++...++++.|.|...|+|++|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 0012477888999999998876655 444 99999999999999999999999999999
Q ss_pred C-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE---EecC
Q 014977 143 R-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAH 215 (415)
Q Consensus 143 ~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~---~~~~ 215 (415)
| |.++++ .|++|+||++.+.+.+.-...+ . .+.++++.|+|+..++ |+.+|.+++++..+..+.. +..|
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~--lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D--LITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-h--hheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeec
Confidence 9 566666 7999999999887777655554 3 3444445555666554 8899999998766533221 1111
Q ss_pred ------ccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977 216 ------DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (415)
Q Consensus 216 ------~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 288 (415)
...|+.+.|.|.. ..|++.+.|.. |+|||.++.+++..|++......-....|+.||++|+++++|..|+||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2379999999743 35777788999 999999999999999986455566778899999999999999999999
Q ss_pred Eceec
Q 014977 289 SLRVR 293 (415)
Q Consensus 289 d~~~~ 293 (415)
++...
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 98543
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-26 Score=208.89 Aligned_cols=241 Identities=14% Similarity=0.218 Sum_probs=210.2
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.-..-+|.+..|-+..+++++|+ |..|+||+.++.+++.. |+.|...+.++..+|...++.++++| -.|++|
T Consensus 52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~--FeAH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW 124 (794)
T KOG0276|consen 52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT--FEAHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLW 124 (794)
T ss_pred eecccchhhheeeeccceEEEecCCceEEEEecccceeeEE--eeccccceeeeeecCCCCeEEecCCc-----cEEEEe
Confidence 34566799999999999999999 99999999999887665 55899999999999999999999998 999999
Q ss_pred ECCCC-CEEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 120 DDHQS-RCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 120 d~~~~-~~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
|.+.+ .+.+++. |...|.+++|+|.. ..++ .|++|+||.+....+..++++|...+.++++-+-++..+|++ |
T Consensus 125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-g 203 (794)
T KOG0276|consen 125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-G 203 (794)
T ss_pred eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-c
Confidence 98776 6777787 99999999999954 3444 799999999999999999999999999999998888889876 8
Q ss_pred CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977 194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (415)
Q Consensus 194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (415)
++|.+|+||+.+. .+++++.+|...|..+.|+|.-.++++|++||+ ++||+..+-+...++.- .-..+++++-.+.
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAAHKG 280 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEeecCC
Confidence 8999999999875 679999999999999999999999999999999 99999888877777765 4458999999998
Q ss_pred CCEEEEEeCCCeEEEEEceec
Q 014977 273 VQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd~~~~ 293 (415)
++.++.|.+.|.|. ..+-..
T Consensus 281 ~~~i~vG~Deg~i~-v~lgre 300 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVT-VKLGRE 300 (794)
T ss_pred CCeEEEeccCCcEE-EEccCC
Confidence 88899998888554 444333
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.6e-27 Score=217.34 Aligned_cols=245 Identities=12% Similarity=0.162 Sum_probs=205.2
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPP 113 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~ 113 (415)
....+|++.|.++....+|-+|++|+ |+++++|.++.... .......+|...+.+++.+.. -.++++++.|
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D----- 433 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD----- 433 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC-----
Confidence 46789999999999777889999999 99999999854322 111223477777888777654 3688899988
Q ss_pred CeEEEEECCCCCE-----EEE-----EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977 114 TKVIIWDDHQSRC-----IGE-----FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 114 ~~i~vwd~~~~~~-----~~~-----~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 180 (415)
.++++|++...+. +.+ ..|...|++++++|+..+++ .|.+.+||++++...+.++.+|...+..+.|
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 9999999866221 111 11899999999999999999 7999999999999999999999985555555
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (415)
++ ..+.+++ ++.|++|+||... ..+++++.+|...|..+.|-.+|+.|++++.||- |++|++++++++.++..
T Consensus 514 s~--~dq~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD~-- 587 (775)
T KOG0319|consen 514 SK--NDQLLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLDA-- 587 (775)
T ss_pred cc--ccceeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhhh--
Confidence 55 4446665 7889999999876 5789999999999999999999999999999999 99999999999999999
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
|...|++++-++.+.++++|+.||.|.+|.=.+.
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 8899999999999999999999999999975443
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5e-26 Score=188.25 Aligned_cols=237 Identities=19% Similarity=0.294 Sum_probs=194.4
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|+..|++++|+|.|++||+++ |.++.||.-...+......+.+|...+.+++|+.++.+|++++.| +.|.|
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-----KSVWi 131 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD-----KSVWI 131 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-----CeEEE
Confidence 458999999999999999999999 999999998765555566677999999999999999999999998 99999
Q ss_pred EECCCC---CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecCCCceE
Q 014977 119 WDDHQS---RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 119 wd~~~~---~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
|.+..+ .++..++ |...|..+.|+|...+++ .|++|++|+-. +-.+++++.+|.+ ++.++.+++.|..
T Consensus 132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSR 209 (312)
T ss_pred EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCce
Confidence 998754 4566666 999999999999877777 79999999875 3367888998887 6777777777777
Q ss_pred EEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEecCCCcc
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRRGVDRA 262 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~~~~~~ 262 (415)
|++ ++.|++|+||..... .-..|...++.+.|. +| .|++++.|+. |++|.-..+ +.+... .+.|..
T Consensus 210 l~s-~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~ 281 (312)
T KOG0645|consen 210 LVS-CSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NG-VIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEV 281 (312)
T ss_pred EEE-ecCCcceEeeeeccC---cchhcccceEeeeec-cc-ceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hccccc
Confidence 776 789999999875421 113477899999998 44 7999999999 999976542 112111 233777
Q ss_pred cEEEEEeCCC-CCEEEEEeCCCeEEEEEce
Q 014977 263 EIYSIALSPN-VQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 263 ~v~~l~~spd-g~~l~s~s~dg~i~vwd~~ 291 (415)
.|++++|+|. ..+|+++++||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 6789999999999999975
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-25 Score=212.56 Aligned_cols=244 Identities=16% Similarity=0.287 Sum_probs=205.0
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|.++|..+.|+|++.+|++|+ |-.|+||+....+.++. +.+|-..|..+.|++..-+++++++| .+
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyPWIlSASDD-----QT 116 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYPWILSASDD-----QT 116 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCceEEEccCC-----Ce
Confidence 455789999999999999999999999 89999999998766655 44899999999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce----------------------------
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---------------------------- 163 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---------------------------- 163 (415)
|+||++.+++++..+. |...|.|..|+|...+++ .|.+|+|||+...+
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA 196 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence 9999999999999999 999999999999777776 79999999983211
Q ss_pred -eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEecCccceEEEEeCCCCCEEEEEeCCCc
Q 014977 164 -LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHDSHIACFTLTLDGLLLATASTRGT 239 (415)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (415)
..+.+.+|...+.-. +++|...+++ +|++|..|++|.++.... -+..+|-..|.++-|+|...++++.++|+.
T Consensus 197 VVK~VLEGHDRGVNwa--AfhpTlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWA--AFHPTLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred eeeeeecccccccceE--EecCCcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence 123446676644444 4455555665 588999999999887654 456799999999999999999999999999
Q ss_pred EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|+|||+...+.+++++. .....+.++-+|..+++++|- |+-+.||.++...
T Consensus 274 -irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleREr 324 (1202)
T KOG0292|consen 274 -IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER 324 (1202)
T ss_pred -EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccC
Confidence 99999999999999987 566899999999999887665 5558899987544
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=4.2e-26 Score=195.42 Aligned_cols=202 Identities=14% Similarity=0.202 Sum_probs=180.6
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd 158 (415)
+.+|...+.++++.|...++++++.| ++|+|||+.+|+...++. |...|..+++++-..+++ .|+.|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46888999999999999999999998 999999999999999998 999999999999988887 799999999
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
++..+.++.+.+|...+ .++...|.-..|++ |+.|.++++|+.+. ..+..+.+|..+|.++.+.|-.-.+++|+.|
T Consensus 222 Le~nkvIR~YhGHlS~V--~~L~lhPTldvl~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGV--YCLDLHPTLDVLVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred chhhhhHHHhcccccee--EEEeccccceeEEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 99999999999998844 45555544446655 77999999999876 4688899999999999999977789999999
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
++ |++||+..|+...++.. |...|.+++.+|....+|+++.|. |+-|++..+.-.
T Consensus 299 ~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~ 353 (460)
T KOG0285|consen 299 ST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL 353 (460)
T ss_pred ce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence 99 99999999999988887 888999999999999999999888 999999998754
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.4e-26 Score=210.65 Aligned_cols=283 Identities=15% Similarity=0.119 Sum_probs=233.6
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
-...+|...|.+++++.+...+++|..+.++||+.++.+.+.... ...+.+..|-|...+++.|... |.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~-----Gel~ 437 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKN-----GELQ 437 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccC-----CceE
Confidence 346899999999999999999999999999999999877665532 2378889999999999999887 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC-----ceeeeEEecc-----CCCcceEEEecC
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-----LKLLHQIETL-----ANLRGLCCLSHH 183 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~-----~~~~~~~~~~-----~~~~~~~~~~~~ 183 (415)
++|+.....+.+++ |.+.|.+++.+||+..++ .|.+|++||+.- +...+.+..+ .-...+.+++.+
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99999998888887 999999999999988877 799999999731 1111111111 112267888999
Q ss_pred CCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc
Q 014977 184 SSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
|++++|++ +--|.+|++ +..+.+-...+.+|.-||.++.++||++++++|+.|.+ |+||-+.-|.+-+.+-+ |..
T Consensus 518 pdgk~LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdD 593 (888)
T KOG0306|consen 518 PDGKLLAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDD 593 (888)
T ss_pred CCCcEEEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccC
Confidence 99999987 778999999 55556777789999999999999999999999999999 99999999999999988 888
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccccc
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (415)
.|.++.|-|+...+.+++.|+.|+-||-++-+...++..|
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---------------------------------------- 633 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---------------------------------------- 633 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc----------------------------------------
Confidence 9999999999999999999999999998777655433333
Q ss_pred CcccccccceEEEEeCCCceEEEEecCCC-EEEEEEeCCcEEEEEEec
Q 014977 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQN-TVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~dg~~~~~~~~~ 389 (415)
-..+.+++.+|++ .+++++.|-+|++|....
T Consensus 634 ----------------~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 ----------------HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ----------------hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 1244567788884 566666689999998865
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-26 Score=183.89 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=196.8
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd 158 (415)
+..+...+..+.|+.+|.+.++++.| .+|++|+...|.+++++. |...|.+++.+.|+..++ .|..+.+||
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34677889999999999999999998 999999999999999999 999999999999988888 689999999
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGLLLATAS 235 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (415)
+.+|+.++.+.+|.. .+.++.++.+...++ +|+.|.++++|+-+. ++++.+......|.++..+ +..+++|+
T Consensus 88 V~TGkv~Rr~rgH~a--qVNtV~fNeesSVv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLA--QVNTVRFNEESSVVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred cccCeeeeecccccc--eeeEEEecCcceEEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999988 455556666655655 589999999998665 5677777778889998875 45799999
Q ss_pred CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccC
Q 014977 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNH 315 (415)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (415)
.||+ ++.||++.|......-+ .+|+++.|++|++.+++++.|+++++.|-++|+-......|
T Consensus 163 ~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh------------- 224 (307)
T KOG0316|consen 163 VDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH------------- 224 (307)
T ss_pred cCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc-------------
Confidence 9999 99999999987655544 38999999999999999999999999999999844322221
Q ss_pred CCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 316 SSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.. ..+ +..|.+... ..++.++.||.+|+|.+..
T Consensus 225 ---------------------------------kn--~ey------kldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 225 ---------------------------------KN--MEY------KLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ---------------------------------cc--cee------eeeeeecccceeEEeccCCceEEEEEecc
Confidence 10 123 334677665 6777777799999999976
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-25 Score=192.61 Aligned_cols=286 Identities=14% Similarity=0.123 Sum_probs=216.3
Q ss_pred ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecC
Q 014977 31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAG 106 (415)
Q Consensus 31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~ 106 (415)
.+..|.......|.+.|.++... ++++++|+ ||.++||+... +.... +.+|...+.++.+.. ....+++++
T Consensus 92 ~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~--~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 92 AITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKT--IVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEE--EecCCcceeeeEEEecCCccceEEEec
Confidence 34455555678899999999988 77999999 99999999875 32232 337777777666543 334688888
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEE-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcC------------------
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV------------------ 160 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~------------------ 160 (415)
.| .++++|.++.+...... .|...|.++...+++..++ .|..|.||+..
T Consensus 167 ~D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 167 MD-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred CC-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 88 99999998877543322 3899999999999999988 79999999931
Q ss_pred -------CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977 161 -------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT 233 (415)
Q Consensus 161 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s 233 (415)
++.++..+.+|..++..+.|.. . -.+++++.|.+|+.|+........-......+.++..+|..++|++
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD--A--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS 317 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC--C--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeee
Confidence 1224556677887555554444 2 2455688999999999876555544455778899999999999999
Q ss_pred EeCCCcEEEEEECCCCc---EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceeccc-CCCCCCCCCCCCc
Q 014977 234 ASTRGTLIRIFNTVDGT---RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVV-GEDSSSSLSTPSQ 308 (415)
Q Consensus 234 ~s~dg~~I~vwd~~~~~---~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 308 (415)
|+.|.. |++||.+++. ..+.|.+ |.+.|.++.|+|.. .+|++++.|+++++||+++.+. .-++..|
T Consensus 318 gssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h------ 388 (423)
T KOG0313|consen 318 GSSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH------ 388 (423)
T ss_pred cCCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC------
Confidence 999999 9999998763 4556777 88899999999955 5688999999999999998872 2221111
Q ss_pred ccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEe
Q 014977 309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~ 388 (415)
.+-+..+.|.....|++||.|.+++|++-.
T Consensus 389 --------------------------------------------------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 --------------------------------------------------NDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred --------------------------------------------------CceEEEEeccCCceEEeccCcceEEEeccc
Confidence 223345667776899999999999999765
Q ss_pred c
Q 014977 389 P 389 (415)
Q Consensus 389 ~ 389 (415)
+
T Consensus 419 ~ 419 (423)
T KOG0313|consen 419 P 419 (423)
T ss_pred c
Confidence 4
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.2e-27 Score=210.64 Aligned_cols=240 Identities=13% Similarity=0.166 Sum_probs=196.3
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT 114 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~ 114 (415)
.....+|..+|..++|+++|..|.+++ |+.+++||+++++......+ .....++.|.|+. ..++.|+.| +
T Consensus 251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd-----~ 322 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSD-----K 322 (503)
T ss_pred ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCC-----C
Confidence 455689999999999999999999999 99999999999887776543 4456677888876 666666666 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
.|+.||+++++.++++. |-+.|..+.|-+++..++ .|+.++||+.+..-.++.+.. ......-++...|++.+++
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeeh
Confidence 99999999999999988 889999999999998888 689999999987665544321 1122445566666777887
Q ss_pred EeCCccCeEEEEEcC----CcceEEEecCc--cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977 191 CPGLQRGQVRIEHFG----LNMIKLINAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~----~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
+ -+.|+.|.++... ....+.+++|. +.-..+.|||||.+|++|+.||. +.+||.++.+.+..++. |..++
T Consensus 402 a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~c 477 (503)
T KOG0282|consen 402 A-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPC 477 (503)
T ss_pred h-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcce
Confidence 6 6688888885533 34456677885 44567899999999999999999 99999999999999998 78899
Q ss_pred EEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977 265 YSIALSPNV-QWLAVASDKGTVHIFS 289 (415)
Q Consensus 265 ~~l~~spdg-~~l~s~s~dg~i~vwd 289 (415)
..+.|+|.. ..+|+++.||.|++|+
T Consensus 478 i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEEecCCCcceeEecccCceeEecC
Confidence 999999954 5789999999999996
No 57
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-25 Score=207.78 Aligned_cols=277 Identities=14% Similarity=0.204 Sum_probs=225.0
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-EeeeC-CeEEEEecCCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRC-NILALVGAGDNSQYPPT 114 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~s~~~d~~~~~~ 114 (415)
....+|+..|..+++.+.. .+++++ |+++++|+-...+..-...+.++...+.. ++|.+ +.-.++.++.| .
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D-----~ 81 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD-----T 81 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc-----c
Confidence 4578999999999987655 677777 99999999865444433444445554444 66664 44456777777 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
.|.+|.+....++..+. |+..|.++....++.++. .|.++++|-. +++...+.+|...++ ++..-|++.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVW--Av~~l~e~~~v-- 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVW--AVASLPENTYV-- 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchhee--eeeecCCCcEE--
Confidence 99999999999999988 999999999999888555 7999999985 466666888888555 55555555443
Q ss_pred eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
+|+.|.+|++|.- ++.++++.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.++.+ |.+-|.+++..+
T Consensus 156 TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecC
Confidence 5889999999976 788999999999999999998864 789999999 999998 8999989888 889999999888
Q ss_pred CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS 351 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (415)
++..++++++|++++||+.. ++.
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~------------------------------------------------------- 252 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECV------------------------------------------------------- 252 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceE-------------------------------------------------------
Confidence 88999999999999999977 322
Q ss_pred eEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecC
Q 014977 352 FAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~ 390 (415)
+.+.+|......+.+-.++.|+++|+||.||||..++.
T Consensus 253 -q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 253 -QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -EEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence 46788876666777777899999999999999999853
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=198.65 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=194.3
Q ss_pred CCCCCCceEEEEEeCCCC-EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYG-CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~-~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.....+.|.+++|+|... -+|+.+.-.+.||+..+..... .+..-...+.++.|..||.+++.|+.. |.|+|
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~s-----G~V~v 94 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDES-----GHVKV 94 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCc-----CcEEE
Confidence 344567899999999665 4777778889999987643322 232456678889999999999999988 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
+|..+...++.+. |..++..+.|+|++..++ .|+.+++||+.+......+.+|.. .+.+.++.|.+..++++|
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTG 172 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEec
Confidence 9977766677776 999999999999776655 678899999998887557788887 556666666666677789
Q ss_pred CccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE-EEEecCCCcccEEEEEeCC
Q 014977 194 LQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-QEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 194 ~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp 271 (415)
+.||.|++|+.+.. ....-..|..+|..+.+-|.|.++++++.+ . |+|||+-+|..+ ..+.. |...|+|+.+..
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~-vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s 248 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-S-VKVWDLTTGGQLLTSMFN--HNKTVTCLRLAS 248 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-e-EEEEEecCCceehhhhhc--ccceEEEEEeec
Confidence 99999999998776 333334699999999999999999998865 3 999999866544 33333 777999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceeccc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
++..|++++-|+.|++||+.+-+.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCceEeecccccceEEEEccceEE
Confidence 999999999999999999777663
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.3e-24 Score=222.79 Aligned_cols=236 Identities=14% Similarity=0.220 Sum_probs=191.5
Q ss_pred CCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEE
Q 014977 43 DEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 43 h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vw 119 (415)
+...|.+++|++ ++.+|++++ |+.|+|||+.+.+.... +..|...+.++.|++ ++.+|++++.| +.|++|
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iW 603 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLW 603 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEE
Confidence 356789999987 478899999 99999999987654433 447888899999996 78889999988 999999
Q ss_pred ECCCCCEEEEEEccCceeEEEEc-CCeEEEE---eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 120 DDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
|+.++..+..+.+...+.++.|+ +++..++ .|+.|++||+++.+ .+..+.+|...+..+.+ . ++.++++ ++
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f--~-~~~~lvs-~s 679 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--V-DSSTLVS-SS 679 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE--e-CCCEEEE-EE
Confidence 99999999888877789999995 4677766 69999999998765 45667777775554444 3 3445655 66
Q ss_pred ccCeEEEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec----------
Q 014977 195 QRGQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR---------- 257 (415)
Q Consensus 195 ~dg~v~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~---------- 257 (415)
.|++|++|+... ..+..+.+|...+..++|+|++.+|++|+.|+. |++|+......+..+..
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence 899999999753 467788999999999999999999999999999 99999876654433221
Q ss_pred -CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 258 -GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 258 -~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 113457999999999999999999999999996
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.9e-25 Score=215.08 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=225.1
Q ss_pred CCCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCc-------e---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977 43 DEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFK-------E---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNS 109 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 109 (415)
++..|.++..+|||..+|+|+ |+.++||+.+... . ........|...+.++.|++||.+||+|++|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD- 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD- 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-
Confidence 455699999999999999988 8899999986421 0 0111124788889999999999999999998
Q ss_pred CCCCCeEEEEECCC------------------CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE
Q 014977 110 QYPPTKVIIWDDHQ------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 110 ~~~~~~i~vwd~~~------------------~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~ 167 (415)
+.|.||+... -+.+..+. |...|.+++|+|++.+++ .|++|.||+..+++.+..
T Consensus 91 ----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 91 ----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 9999999662 12344455 999999999999999999 799999999999999999
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecC------ccceEEEEeCCCCCEEEEEeC----
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAH------DSHIACFTLTLDGLLLATAST---- 236 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~---- 236 (415)
+.+|.. .+-.+.|+|-|+++|+ -+.|++|++|... ....+.+..+ ...+..+.|||||++|++...
T Consensus 167 l~~H~s--~VKGvs~DP~Gky~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 167 LRGHQS--LVKGVSWDPIGKYFAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eecccc--cccceEECCccCeeee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 999988 4556777888899987 5689999999843 3445555443 345788999999999998643
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC-----CC------------EEEEEeCCCeEEEEEceecccCCCC
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQ------------WLAVASDKGTVHIFSLRVRVVGEDS 299 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~l~s~s~dg~i~vwd~~~~~~~~~~ 299 (415)
-.. +.|.+-.+.+.-..|-+ |.+++..+.|+|. .+ .+|+|+.|++|.||.....++.-
T Consensus 244 ~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-- 318 (942)
T KOG0973|consen 244 KST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-- 318 (942)
T ss_pred cce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh--
Confidence 224 88988877787778888 8889999999971 11 57899999999999986655431
Q ss_pred CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe
Q 014977 300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM 378 (415)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 378 (415)
+ -..+.......++|+++ -.|++++.
T Consensus 319 ------------------------------------------v-----------i~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 319 ------------------------------------------V-----------IHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred ------------------------------------------h-----------hhhhhcCceeeeeEcCCCCeEEEEec
Confidence 0 11122245567899999 66777777
Q ss_pred CCcEEEEEEecCCCCcEEE
Q 014977 379 DGSFYRCSFDPVHGGEMLQ 397 (415)
Q Consensus 379 dg~~~~~~~~~~~~~~~~~ 397 (415)
||+|+.+.|++.+-|+.+.
T Consensus 346 DGtV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 346 DGTVALIHFEEKELGVALS 364 (942)
T ss_pred CCeEEEEEcchHHhCcccC
Confidence 9999999999977776654
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.3e-25 Score=215.88 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=210.0
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC------Cc----------eeEEEeccCCCeeEEEEeeeCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FK----------ETFRRDLKSGGFRIVEMLFRCNI 99 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~ 99 (415)
..+...|.+.|+|+.|+|||++||+|+ |+.|.||+... ++ ......+.+|...|.++.|+|++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 345678999999999999999999999 88899999872 10 01223456899999999999999
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-- 173 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~-- 173 (415)
.++++++.| +.|.+|+..+.+.+..+. |...|..+.|.|-|++++ .|++|+||++.+....+.+..+..
T Consensus 142 ~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 142 SLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred cEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 999999998 999999999999999888 999999999999999999 799999999887777777655432
Q ss_pred --CcceEEEecCCCceEEEEeCCccC---eEEEEEcCC-cceEEEecCccceEEEEeCCC--------C-----C----E
Q 014977 174 --LRGLCCLSHHSSTSVLACPGLQRG---QVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------G-----L----L 230 (415)
Q Consensus 174 --~~~~~~~~~~~~~~~l~~~g~~dg---~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------g-----~----~ 230 (415)
......++|+|+|.+|++....++ ++.|-.+.. +.-..+-+|.+++.+++|+|. | . .
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 225678899999999987654443 455544433 446778899999999999981 1 1 5
Q ss_pred EEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCC
Q 014977 231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300 (415)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~ 300 (415)
+|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|+++|.||+|.++.++..+-++.+.
T Consensus 297 ~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 297 AAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS 364 (942)
T ss_pred EEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence 789999999 999998877887665543 45689999999999999999999999999998876554433
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.9e-26 Score=198.36 Aligned_cols=243 Identities=14% Similarity=0.214 Sum_probs=194.1
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|..+|..+.||||.++|++++ +..+.+||+.++....... +++...+.+.+|.||+..+++|+.| +.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~ 335 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPD-----RT 335 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCC-----Cc
Confidence 455789999999999999999999988 8889999999876544332 2456888999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 116 VIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+..||+. |..+...+ ....|.++++++||+.++ .|..|++|+.++......+..+. .+..++.+.++++++
T Consensus 336 i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 336 IIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLAL 411 (519)
T ss_pred EEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEE
Confidence 9999965 44444433 346799999999999887 79999999998765554444433 456666677777766
Q ss_pred EeCCccCeEEEEEcCC-cceEEEecCccc--eEEEEeC-CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSH--IACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~--i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
+ .-.+..+++|+... ..++.+.+|... +-.-+|. .+..++++|++|+. |+||+..+|+++.++.+ |...|++
T Consensus 412 v-nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNc 487 (519)
T KOG0293|consen 412 V-NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNC 487 (519)
T ss_pred E-EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeE
Confidence 5 56789999998874 445667777654 3333454 35579999999999 99999999999999999 8889999
Q ss_pred EEeCC-CCCEEEEEeCCCeEEEEEceec
Q 014977 267 IALSP-NVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 267 l~~sp-dg~~l~s~s~dg~i~vwd~~~~ 293 (415)
++|+| +-.++|+|++||+|+||-....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999 4568999999999999987754
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.7e-26 Score=193.51 Aligned_cols=248 Identities=13% Similarity=0.215 Sum_probs=203.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe------ccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD------LKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.-+.+..+.|..|+|||++|++|+ ||-|.+|+..+++...... |--+...+.++.|+.+...+++|+.|
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD---- 284 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD---- 284 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC----
Confidence 346677899999999999999999 9999999998754322211 12356789999999999999999998
Q ss_pred CCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 113 PTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
|.|+||.+.+|.+++.+. |...|+++.|+.|+..+. .|.++++.-+..|++++.+.+|... +....+.++|.
T Consensus 285 -GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--vn~a~ft~dG~ 361 (508)
T KOG0275|consen 285 -GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--VNEATFTDDGH 361 (508)
T ss_pred -CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--ccceEEcCCCC
Confidence 999999999999999997 999999999999998877 6999999999999999999999884 44555556677
Q ss_pred EEEEeCCccCeEEEEEcCC-cceEEEec--CccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-c
Q 014977 188 VLACPGLQRGQVRIEHFGL-NMIKLINA--HDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-A 262 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~--~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~ 262 (415)
.+++ ++.||+|++|+... .++.+++. ...+|+++..-|. -..++++...++ |+|-++ .|+.++.+..+... +
T Consensus 362 ~iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 362 HIIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGG 438 (508)
T ss_pred eEEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCC
Confidence 7765 67899999998654 56666653 4567888887774 457888888888 999997 68888888754333 4
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
...+.+.+|.|.++.+.++|+.++-|.+.+|+-..
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 56677899999999999999999999999998554
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=209.34 Aligned_cols=237 Identities=14% Similarity=0.212 Sum_probs=200.2
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+...+.+..|. ..++++++ ++.|++|+..+...+.. .+.+|...+.++.+...+..+++|+.| .++++||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd~ 278 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWDC 278 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEecCCCEEEEEecC-----CcEEeEec
Confidence 57778888888 55777777 99999999988655443 366899999999998877888899988 99999999
Q ss_pred CCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
.+|++...+. |...|.++...+....-. .|.+|++|++.+++.++.+.+|..++..+.+. +.+++ +|+.|++|
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~~~lv-sgs~d~~v 353 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----EPLLV-SGSYDGTV 353 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec----CCEEE-EEecCceE
Confidence 9999999999 999999998877655554 89999999999999999998888755544444 23454 48899999
Q ss_pred EEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977 200 RIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 200 ~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
++|+.. +++++.+.+|...|+++.+.+. ..+++|+.|+. |++||+.+. +++.++.. |...+..+.+ .+++|+
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccceeE
Confidence 998865 6789999999999999988776 88999999999 999999999 89999988 7777766554 678999
Q ss_pred EEeCCCeEEEEEceecccCCC
Q 014977 278 VASDKGTVHIFSLRVRVVGED 298 (415)
Q Consensus 278 s~s~dg~i~vwd~~~~~~~~~ 298 (415)
+++.|++|++||..++++.++
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred eccccccEEEeecccCceeee
Confidence 999999999999999997753
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=198.61 Aligned_cols=247 Identities=15% Similarity=0.186 Sum_probs=203.0
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
.....|.+.+..+.|-++...|++|+ |..|++|++...+......+.+....+..+.|.+++..+++++.| +.+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-----~~~ 243 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-----KNL 243 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-----Cce
Confidence 45678999999999999999999999 999999999876644555566777889999999999888888887 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++|++...+...++. |...|+++.|......++ .|.+|++||+....+.+++..... +..+... ...+++
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~---cnDI~~~---~~~~~S 317 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ---CNDIVCS---ISDVIS 317 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc---ccceEec---ceeeee
Confidence 999999999999988 999999999988776555 799999999998888776644332 2222222 124456
Q ss_pred CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC--cccEEEEEe
Q 014977 193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIAL 269 (415)
Q Consensus 193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~ 269 (415)
|-.|++|++|+.+. .+......+ +.|+++..+++|..|.+++.|.. +.+.|+++.+....+..... ....+.+.|
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred cccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence 99999999999555 455555554 49999999999999999999999 99999999988877764222 235889999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
||++.|+++|+.||.|+||++.+++...
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEE
Confidence 9999999999999999999999998654
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.9e-25 Score=202.18 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=202.0
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+.+.|+++.|+++|.+||+|. +|.|.|||....+....... .|...+-+++|. ...+.+|+.+ +.|..+|+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~--~~~lssGsr~-----~~I~~~dv 287 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN--SSVLSSGSRD-----GKILNHDV 287 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc--CceEEEecCC-----CcEEEEEE
Confidence 378999999999999999999 99999999987665544332 278888899998 5667777777 99999999
Q ss_pred CCCCEEEE-EE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 122 HQSRCIGE-FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 122 ~~~~~~~~-~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+..+.... +. |...|..++|++|+.+++ .|+.+.|||....++...+..|...+..++|+|...+.+....|+.|
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 88766555 55 899999999999999999 79999999998888899999999988888888877664444445689
Q ss_pred CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE--eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
+.|++|+...............|.+|.|++..+.|+++ ..++. |.||+..+.+.+..+.+ |...|..++++|||.
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGE 444 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCC
Confidence 99999987765544444567899999999998766654 34566 99999999999999998 888999999999999
Q ss_pred EEEEEeCCCeEEEEEceecc
Q 014977 275 WLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 275 ~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+++|+.|.++++|++-...
T Consensus 445 ~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 445 TIVTGAADETLRFWNLFDER 464 (484)
T ss_pred EEEEecccCcEEeccccCCC
Confidence 99999999999999998754
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2e-25 Score=182.65 Aligned_cols=285 Identities=12% Similarity=0.091 Sum_probs=227.6
Q ss_pred cCCCCCCceEEEEEeC---CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp---~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
...+|..+|..++|+| +|-+|++++ |+.-.+-+-+++..+- .|.+|...+.....+.+....+++..| -
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--tfeghkgavw~~~l~~na~~aasaaad-----f 81 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--TFEGHKGAVWSATLNKNATRAASAAAD-----F 81 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--eeeccCcceeeeecCchhhhhhhhccc-----c
Confidence 5789999999999984 888899998 9988887777766544 466899999998888888888888887 8
Q ss_pred eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+-+|||..+|..+..+.|+.-|.+++|+.|...++ .+.-++|||++.. .+...+.+|...+.-+-|... + ..|+
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D-~~iL 159 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-D-KCIL 159 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-C-ceEE
Confidence 99999999999999999999999999999999888 5677999999654 345667778775555555443 2 3444
Q ss_pred EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
+ ...|++|++|+.+......-.....+|+++.++++|++|.++. .+. |.+||..+..+++.++ ....|.+..++
T Consensus 160 S-Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k---~P~nV~SASL~ 233 (334)
T KOG0278|consen 160 S-SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYK---MPCNVESASLH 233 (334)
T ss_pred e-eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeecc---Ccccccccccc
Confidence 4 3689999999877654444344678999999999999877655 445 9999999999998887 45679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
|+...+++|++|..++.||..+++.... +
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------------------~------------- 262 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------------------Y------------- 262 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeee--------------------------------------c-------------
Confidence 9999999999999999999999986531 0
Q ss_pred ceEEEEeCCCceEEEEecCCCEEEE-EEeCCcEEEEEEecCCCC
Q 014977 351 SFAQFHIPEVTHFIAAFGSQNTVVI-VSMDGSFYRCSFDPVHGG 393 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~dg~~~~~~~~~~~~~ 393 (415)
.+-..+++-++.|+|++.+++ ++.||+|++|+..+.+..
T Consensus 263 ----nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 263 ----NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ----ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 011236777899999955555 555999999999985544
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=175.66 Aligned_cols=238 Identities=19% Similarity=0.261 Sum_probs=205.2
Q ss_pred cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...+|.+.|-.++|+|. ..+|++++ |..|++||....+.........+ -.-+.|+|++..++.++.| ..|
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp~g~~~~~~~kd-----D~i 130 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSPDGEYIAVGNKD-----DRI 130 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcCCCCEEEEecCc-----ccE
Confidence 46789999999999975 46788888 99999999998777766554333 3446699999999999887 999
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
...|.++.+.+...++...+..+.|+.++.+++ ..|.|.|......++++.++.|.. .++|+.++|+|+++|+ |
T Consensus 131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~-G 207 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFAT-G 207 (313)
T ss_pred EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEee-c
Confidence 999999999999888888999999987666655 358999999999999999998875 8999999999999987 8
Q ss_pred CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977 194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (415)
Q Consensus 194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (415)
+.|..+.+|+.+. -+++.+..+.-+|..+.|+.||++||+|++|.. |-|=++++|..+.+++ +.++...++|+|.
T Consensus 208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPK 283 (313)
T ss_pred cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCC
Confidence 8999999988764 678889999999999999999999999999999 9999999999999998 6788999999999
Q ss_pred CCEEEEEeCC---------CeEEEEEce
Q 014977 273 VQWLAVASDK---------GTVHIFSLR 291 (415)
Q Consensus 273 g~~l~s~s~d---------g~i~vwd~~ 291 (415)
..+||-+..| |++++|-+.
T Consensus 284 ~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 284 RPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CceeeEEecCCCCccccccceeEEecCC
Confidence 9999987765 567776543
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=7.9e-24 Score=185.81 Aligned_cols=236 Identities=12% Similarity=0.167 Sum_probs=201.2
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
...|.++...|....+++|+ |..+.++|....+.+. .+++|...+..+.++++...+++++.| ..|+||...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~~ 291 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFHKDLDTVITASAD-----EIIRVWSVP 291 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEeccchhheeecCCc-----ceEEeeccc
Confidence 35688888888878899999 8899999998755443 366999999999999999999999987 999999987
Q ss_pred CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 123 ~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
......... |..+|+.+..+|.|.+++ .|+++.+.|++++..+.........+...+..++|+|.++.. |..|+.
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt-gt~d~~ 370 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT-GTPDGV 370 (506)
T ss_pred cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec-cCCCce
Confidence 766555555 999999999999999998 689999999999998887766566677888899999977765 899999
Q ss_pred EEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977 199 VRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 199 v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
|+||+... ..+..|.+|.++|..|+|+.+|-+|+++++|+. |++||++..+..+++... ....+.++.|.+.|.+|+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCeEE
Confidence 99998765 456778999999999999999999999999999 999999998888887754 233799999999999999
Q ss_pred EEeCCCeEEEEE
Q 014977 278 VASDKGTVHIFS 289 (415)
Q Consensus 278 s~s~dg~i~vwd 289 (415)
.++.|=.|++++
T Consensus 449 ~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 449 IAGSDLQVYICK 460 (506)
T ss_pred eecceeEEEEEe
Confidence 997765555554
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=191.93 Aligned_cols=234 Identities=12% Similarity=0.281 Sum_probs=189.1
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....||++.|.|+.|.. +.+++|+ |.+|+|||+++++.+... + .|...+..+.|+.+ ++++++.| ..+
T Consensus 231 ~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl-i-hHceaVLhlrf~ng--~mvtcSkD-----rsi 299 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL-I-HHCEAVLHLRFSNG--YMVTCSKD-----RSI 299 (499)
T ss_pred HhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH-h-hhcceeEEEEEeCC--EEEEecCC-----cee
Confidence 45689999999999964 4888999 999999999997765442 2 78888999888765 45677777 999
Q ss_pred EEEECCCCCEEE---EEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 117 IIWDDHQSRCIG---EFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 117 ~vwd~~~~~~~~---~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
.|||+.....+. .+. |...|+.+.|+.. +++ .|.+|++|++.+++.+.++.+|.. ++.|+.+.+ +++
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQYr~--rlv 373 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQYRD--RLV 373 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccc--cceehhccC--eEE
Confidence 999987654322 222 8889999999766 444 799999999999999999999987 666676653 444
Q ss_pred EEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE---------EEEEecCC
Q 014977 190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---------LQEVRRGV 259 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---------~~~~~~~~ 259 (415)
++|+.|.+|++|+.. +.+++.+++|+.-|.++.|. .+.+++|+.||+ |+|||+..+.. +..+..
T Consensus 374 -VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~-- 447 (499)
T KOG0281|consen 374 -VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE-- 447 (499)
T ss_pred -EecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhh--
Confidence 569999999998865 67889999999999999994 567999999999 99999987642 333344
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|.+.|..+.| |...|++++.|.+|.|||+..+-..
T Consensus 448 hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 448 HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 7889999999 4578999999999999999887643
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.4e-25 Score=191.10 Aligned_cols=292 Identities=10% Similarity=0.109 Sum_probs=221.6
Q ss_pred ccccccCCCCCccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEe
Q 014977 27 SASASFGHPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVG 104 (415)
Q Consensus 27 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 104 (415)
..-..|..|......+|.+.|.+++=+|.. ..+|+|+ ||.|+|||+....+... +..|...|..+++.. ..+++
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--f~AH~G~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--FKAHEGLVRGICVTQ--TSFFT 124 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--eecccCceeeEEecc--cceEE
Confidence 344556667677789999999999999987 7889999 99999999987554443 446777777777776 55667
Q ss_pred cCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977 105 AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 105 ~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
+++| .+|+.|.++- .++.++-....+.++.-+..+..++ ....|.|||..-..++..+..... .+.++.++
T Consensus 125 vgdD-----KtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfN 196 (433)
T KOG0268|consen 125 VGDD-----KTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFN 196 (433)
T ss_pred ecCC-----cceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecC
Confidence 7776 9999999654 5777777788888888877777777 566899999988888888877766 44555555
Q ss_pred CCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCc
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDR 261 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~ 261 (415)
|-...|+.++..|+.|.+++.+. .+++.+. ....-+.|+|+|++-.+++|++|.. ++.||++.. .++....+ |.
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hv 272 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HV 272 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cc
Confidence 55444555566899999966554 4444432 3455678999998888999999999 999999865 45666777 88
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccc
Q 014977 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV 341 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (415)
+.|.++.|||.|+-+++|+.|.+|+||.++.+...+ .|..+
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------------------------------------iYhtk- 313 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------------------------------------IYHTK- 313 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchh--------------------------------------hhhHh-
Confidence 899999999999999999999999999999887442 11110
Q ss_pred cCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+. ..+.++.|+.+ ..|++|+.||.|++|.-..
T Consensus 314 --------------RM--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 314 --------------RM--QHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------hh--heeeEEEEeccccEEEecCCCcceeeeecch
Confidence 00 34567899999 5566666689999997654
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.9e-24 Score=184.82 Aligned_cols=242 Identities=13% Similarity=0.177 Sum_probs=197.1
Q ss_pred CccCCCCCCceEEEEEeCCCC---EEEEEe-CCcEEEEEccCCceeEEEe--ccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQDYG---CFAAGT-SCGFRIYNCEPFKETFRRD--LKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~---~la~g~-d~~v~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (415)
.....+|.++|.+++|.-... .|++++ |.++++|.++......... ..+|...+-++...+++..+++++.|
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D-- 214 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD-- 214 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc--
Confidence 345789999999888864333 588888 9999999998755443322 23888899999999999999999998
Q ss_pred CCCCeEEEEECCC-------------------------CCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977 111 YPPTKVIIWDDHQ-------------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL 162 (415)
Q Consensus 111 ~~~~~i~vwd~~~-------------------------~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~ 162 (415)
..|.+|+..+ +.++..+. |..+|.++.|++.+.... .|.+|+.||+.++
T Consensus 215 ---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 215 ---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence 9999999321 22344455 889999999998555444 7999999999999
Q ss_pred eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCCC-EEEEEeCC
Q 014977 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGL-LLATASTR 237 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~d 237 (415)
+....+.+.. ...++...+...+|++ |+.|..+++|+.+.. ..+.+.+|.+.|.++.|+|... +|++++.|
T Consensus 292 ~~~~~~~~~k---sl~~i~~~~~~~Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 292 GLKSTLTTNK---SLNCISYSPLSKLLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred cceeeeecCc---ceeEeecccccceeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 9988887654 5677777777777776 889999999887653 3567889999999999999665 68899999
Q ss_pred CcEEEEEECCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 238 GTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 238 g~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
++ +++||+++.+ +++.+.+ |...|.++.|+ ++..|++|+.|.+|+|+.-.
T Consensus 368 ~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 NT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred Ce-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99 9999999887 8999998 78899999996 56789999999999998744
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-24 Score=175.27 Aligned_cols=236 Identities=18% Similarity=0.182 Sum_probs=178.6
Q ss_pred EEEEEeCC-CCEEEEE--------eCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeE
Q 014977 48 ISVSWNQD-YGCFAAG--------TSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKV 116 (415)
Q Consensus 48 ~~l~~sp~-g~~la~g--------~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i 116 (415)
+++.|||- ..+||++ +.|.+.|-++. ..+......+ .-.....+++|+++. ..++++..| |.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GD-----GSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGD-----GSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecC-----ceE
Confidence 57788882 2233322 26778888885 3333333334 456678888998753 344444444 999
Q ss_pred EEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 117 IIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 117 ~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
++||+.. ..++..++ |+.+|.++.|++..+... .|++|++|+..-++.+.++.+|...+....++|...+ +++
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfa 164 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFA 164 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEE
Confidence 9999533 46777777 999999999998654433 7999999999989999999999886666667766544 344
Q ss_pred EeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEE
Q 014977 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l 267 (415)
+.+.|+++++|+.+. .....+..|...|.++.|+. +...|++|+.|+. |++||++.- .++.++.+ |.-.|..+
T Consensus 165 -s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv 240 (311)
T KOG0277|consen 165 -SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV 240 (311)
T ss_pred -EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence 467899999998764 33444899999999999997 5678999999999 999999875 46778877 78899999
Q ss_pred EeCCCC-CEEEEEeCCCeEEEEEceecc
Q 014977 268 ALSPNV-QWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg-~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.|||.. ..|++++.|-+++|||...+.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccch
Confidence 999954 588999999999999998665
No 74
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.1e-23 Score=199.00 Aligned_cols=226 Identities=14% Similarity=0.121 Sum_probs=176.0
Q ss_pred cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce-----eEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCC
Q 014977 39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQ 110 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~ 110 (415)
...+|.+.|++++|+| ++.+|++|+ |+.|+||++.+... .....+.+|...+.++.|+|+. .+|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-- 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-- 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence 4678999999999999 889999999 99999999976431 1123455788889999999975 688888887
Q ss_pred CCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+.|++||+.+++.+..+. |...|.+++|+|++.+++ .|+.|++||+++++.+..+..|..... ....+.+++
T Consensus 148 ---gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~~~ 223 (493)
T PTZ00421 148 ---MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAKRK 223 (493)
T ss_pred ---CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcCCC
Confidence 999999999999888887 889999999999998887 699999999999999888887765332 223344444
Q ss_pred eEEEEeC---CccCeEEEEEcCC--cceEEEecC-ccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCC
Q 014977 187 SVLACPG---LQRGQVRIEHFGL--NMIKLINAH-DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 187 ~~l~~~g---~~dg~v~i~~~~~--~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~ 259 (415)
..++++| +.|+.|++|+.+. ..+.....+ ...+....|++++.+|++++ .|+. |++||+.+++.+......
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~- 301 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS- 301 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence 4555545 3589999999864 233333333 34556678999999999887 4999 999999999887665432
Q ss_pred CcccEEEEEeCCC
Q 014977 260 DRAEIYSIALSPN 272 (415)
Q Consensus 260 ~~~~v~~l~~spd 272 (415)
...++..++|.|.
T Consensus 302 s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 SVEPHKGLCMMPK 314 (493)
T ss_pred CCCCCcceEeccc
Confidence 4456788888884
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=2.3e-25 Score=182.28 Aligned_cols=242 Identities=10% Similarity=0.094 Sum_probs=197.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|+++|++..++.+..+-|++. |=+-+|||.-++..+.. | .|..-+..++|+.+...|++++.+ ..++
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs--f-~hkhivk~~af~~ds~~lltgg~e-----kllr 125 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS--F-EHKHIVKAVAFSQDSNYLLTGGQE-----KLLR 125 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--h-hhhheeeeEEecccchhhhccchH-----HHhh
Confidence 4578999999999999998888888 99999999988766543 3 566678889999999999999998 9999
Q ss_pred EEECCCCC-EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 118 IWDDHQSR-CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 118 vwd~~~~~-~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
|+|++.-+ +..++. |.+.|..+.|....+.++ .|++|++||.++++.++.+.... ++....+ +++|.+|..+
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEv--s~dG~ilTia 202 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEV--SQDGRILTIA 202 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceee--ccCCCEEEEe
Confidence 99987653 455555 899999999987666665 69999999999999999997654 2344444 4556666442
Q ss_pred CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE-ecCCCcccEEEEEeCC
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIALSP 271 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp 271 (415)
..+.|.+|+...-.+..-..-...|.+..++|+...+++|++|.. ++.||..+|+.+..+ ++ |.++|.++.|+|
T Consensus 203 --~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVrFSP 277 (334)
T KOG0278|consen 203 --YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVRFSP 277 (334)
T ss_pred --cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEEECC
Confidence 466888888765333222234567888999999999999999999 999999999998886 45 888999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccC
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
||...++|+.||+|+||....++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999877754
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2e-25 Score=189.13 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=208.0
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..-+.++|.|+.|+.|..+||+|+ ||.|+||.+.++..+.+.. ..|..++.++.|+.++..+.+++.| .++++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRi 332 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFD-----QTVRI 332 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcchhhccccc-----ceEEE
Confidence 345789999999999999999999 9999999999977654432 3788999999999999999999998 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEEEeC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLACPG 193 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g 193 (415)
.-+++|+++++++ |...|+...|.++|..++ .||+|++|+..+.+++.+++.......+..+..-|.+. .++ .+
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i-VC 411 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI-VC 411 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE-EE
Confidence 9999999999999 999999999999999888 79999999999999999997766555555555444432 233 35
Q ss_pred CccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 194 LQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
...++|+|-+..++.++.+... .+...+..++|.|.++.+.++|+. ++.|.+.+|+...++.. |...|..++-+
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HH 488 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHH 488 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccC
Confidence 6788999999999999988643 345667789999999999999999 99999999999999988 77889999999
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 014977 271 PNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd 289 (415)
|..+.||+-++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999995
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.4e-23 Score=174.97 Aligned_cols=247 Identities=12% Similarity=0.119 Sum_probs=188.9
Q ss_pred cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....-.+.|.+|+||| ...++++|+ |++||+|+++..+...-+....+...+.+++|+.++..+++++.| +.+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~~ 96 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQA 96 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----Cce
Confidence 3445678899999999 445566777 999999999875444444455788999999999999999999988 999
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcCCeE--EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRI--VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~--~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
++||+.+++..+.-.|..+|..+.|-+... .++ .|.+|+.||++...++.++..+. .+.++.. ...++++
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv--~~pm~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADV--LYPMAVV 171 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhc--cCceeEE
Confidence 999999998877777999999999987655 444 79999999999988888887655 3343333 2234443
Q ss_pred eCCccCeEEEEEcCCcceE--EEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cEEEEEecCCC------
Q 014977 192 PGLQRGQVRIEHFGLNMIK--LIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVD------ 260 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~--~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~------ 260 (415)
+..++.|.++.+...... .+. .-+-.+.+|+..+|....+.|+-+|. +.|..+..+ +.-..|+.|..
T Consensus 172 -ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 172 -ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred -EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCC
Confidence 557888999877553321 111 23456789999898888899999999 999998876 44445554211
Q ss_pred -cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 261 -RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 261 -~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
--.|++|+|+|....|++++.||++.+||-+...+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 1257889999999999999999999999987776543
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=180.38 Aligned_cols=247 Identities=14% Similarity=0.200 Sum_probs=195.5
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC----------------ceeEEEeccCCCeeEEEEeeeCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------KETFRRDLKSGGFRIVEMLFRCNIL 100 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (415)
.-...|+.++.+.+|++||.++|+|+ |..|+|.|++.. ..-..+.+-.|...+..+.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34578999999999999999999999 999999998710 0012234457778899999999999
Q ss_pred EEEecCCCCCCCCCeEEEEECCCCCE---EEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec-cCC
Q 014977 101 ALVGAGDNSQYPPTKVIIWDDHQSRC---IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LAN 173 (415)
Q Consensus 101 ~l~s~~~d~~~~~~~i~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~ 173 (415)
+|++++.| ++|+++|...-.. .+.++...+|.++.|+|.|.+++ ....+++||+++.++...-.. ...
T Consensus 186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999998 9999999765433 33344678999999999999888 567899999999887654421 222
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEe-cC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN-AH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~-~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
...+.++.+++.+.+.++ ++.||.|+||+ ..++++.++. +| ...|.+..|..+|+++++.+.|.. +++|.+.+++
T Consensus 261 t~ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R 338 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGR 338 (430)
T ss_pred ccceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCc
Confidence 236677778877776654 88999999987 4567777764 55 457899999999999999999999 9999999988
Q ss_pred EEEEEec-----------------------------------------------CCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 251 RLQEVRR-----------------------------------------------GVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 251 ~~~~~~~-----------------------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
.+.++.+ ..|.+.+..+.-||.+.-+++++.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7766543 12556677788888888899999999
Q ss_pred eEEEEEce
Q 014977 284 TVHIFSLR 291 (415)
Q Consensus 284 ~i~vwd~~ 291 (415)
.+++|--+
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999644
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.7e-22 Score=159.17 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=214.0
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------------c-eeEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------K-ETFRRDLKSGGFRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 107 (415)
.....|.+++|+|.|.+.|+|+ ..+++|-..... . .+..+.-+.|...+.+.+|++.+.++++++.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4456799999999999999999 888887644210 0 1111223467788999999999999999999
Q ss_pred CCCCCCCeEEEEECCCCCE-----EEEEE-ccCceeEEEEcCC----eEEEE----eCCeEEEEEcCCceeeeEEeccCC
Q 014977 108 NSQYPPTKVIIWDDHQSRC-----IGEFA-FRSDVRSVKLSRD----RIVVV----LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~-----~~~~~-~~~~i~~l~~~~~----~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
| .+|++.-.....+ -.++. |.+.|++++|..+ +.+++ .|..|++-|...++..+.+.+|..
T Consensus 110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 8 9999987654332 22344 8999999999643 55555 577899999999999999999887
Q ss_pred CcceEE-EecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEec--C-----ccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977 174 LRGLCC-LSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA--H-----DSHIACFTLTLDGLLLATASTRGTLIRIF 244 (415)
Q Consensus 174 ~~~~~~-~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~--~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (415)
.+++ ++|+. .++++|+.|.+|++|+.+-. ++.++.. | ...|.+++..|.|++|++|-.|.. ..+|
T Consensus 185 --hilalyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly 258 (350)
T KOG0641|consen 185 --HILALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY 258 (350)
T ss_pred --cEEEEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence 4444 34543 34556999999999998754 3444321 2 357899999999999999999999 9999
Q ss_pred ECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977 245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (415)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (415)
|++.++.++.+.. |...|.++.|+|...+|++++.|..|++-|++..-..
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------------------- 308 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------------------- 308 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh----------------------------
Confidence 9999999999988 8899999999999999999999999999998754321
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
.||.+. +--..+-...|.|+++ =..+..+.|-++-+|.+.
T Consensus 309 ----------------el~~~v--------v~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 ----------------ELPIMV--------VAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----------------cCceEE--------EEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 233221 1111234456889998 567777779999998764
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-23 Score=176.99 Aligned_cols=240 Identities=16% Similarity=0.210 Sum_probs=191.3
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE--EEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~~~~ 115 (415)
....|.+.|++++.+ +.++|+|+ |.+|+|||+....+.-.. -.|...+.++.|.+... .|.++.+| |.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l--l~HagsitaL~F~~~~S~shLlS~sdD-----G~ 108 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL--LSHAGSITALKFYPPLSKSHLLSGSDD-----GH 108 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce--eccccceEEEEecCCcchhheeeecCC-----Cc
Confidence 367899999999986 78999999 999999999875544332 26788899999988764 77888887 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
|.+|+...-.++..++ |.+.|+.++++|.+++.+ .|+.++.||+-.|+.-..+.....+ .. +.|+++|.+++.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVV 185 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEE
Confidence 9999999999999998 899999999999999887 7999999999888876666544321 33 555567776665
Q ss_pred eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe--
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-- 269 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-- 269 (415)
.+ ...|-+|......+.........+.++.|- ++..|++|..|+. |.+||..+..++..+.+ |...|.++.+
T Consensus 186 ~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SG--RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYT 259 (362)
T ss_pred Ee--ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEe
Confidence 43 346777776665444333334556677775 5567899999999 99999999999999998 8899999984
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.|++.+|++++.||.|+|||++...+.
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccC
Confidence 478899999999999999999987544
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-23 Score=191.68 Aligned_cols=277 Identities=14% Similarity=0.130 Sum_probs=223.0
Q ss_pred EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~ 127 (415)
+-+.|+ ....||+|....|.+|+..+........+ +...+.++.|+++|..|+.|..+ |.|.|||..+.+.+
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT 252 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence 445677 56689999999999999988664444443 37889999999999999999888 99999999998888
Q ss_pred EEEE--ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977 128 GEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (415)
Q Consensus 128 ~~~~--~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~ 203 (415)
..+. |...|.+++|+....... .++.|..+|++..+.... +.+|.. .++.+.+++++.++|. |+.|+.+.||+
T Consensus 253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lAS-GgnDN~~~Iwd 329 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLAS-GGNDNVVFIWD 329 (484)
T ss_pred ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeecc-CCCccceEecc
Confidence 8876 689999999994443333 799999999988766555 666666 7888888889999986 77999999988
Q ss_pred c-CCcceEEEecCccceEEEEeCC-CCCEEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-
Q 014977 204 F-GLNMIKLINAHDSHIACFTLTL-DGLLLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV- 278 (415)
Q Consensus 204 ~-~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s- 278 (415)
. ...+...+..|.+.|.+++|+| ...+||+|+ .|+. |++||..+++.+..+.. .+.|..|.|++..+-|++
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEe
Confidence 7 4567888999999999999999 456888865 5888 99999999999988874 457999999998876665
Q ss_pred -EeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 014977 279 -ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI 357 (415)
Q Consensus 279 -~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (415)
|..++.|.||+..+.+....+..|
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH------------------------------------------------------- 430 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGH------------------------------------------------------- 430 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCC-------------------------------------------------------
Confidence 445678999999987655433333
Q ss_pred CCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCcE
Q 014977 358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEM 395 (415)
Q Consensus 358 ~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~~ 395 (415)
...+..++++|+ ..|+++++|.++.+|++-.....++
T Consensus 431 -~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 431 -TSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred -cceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence 123455789999 8899999999999999987544333
No 82
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=8.1e-23 Score=194.97 Aligned_cols=244 Identities=13% Similarity=0.109 Sum_probs=178.9
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE-----------EeccCCCeeEEEEeeeC-CeEEEEecCCC
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRC-NILALVGAGDN 108 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~l~s~~~d 108 (415)
.|-..|.....++++..+++++ +.....|+...+..++. ..+.+|...|.++.|+| ++..|++++.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3455566666777766555555 55555666543221110 11347888899999999 78889999988
Q ss_pred CCCCCCeEEEEECCCCC-------EEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977 109 SQYPPTKVIIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~-------~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
+.|++||+.++. .+..+. |...|.+++|+|++ .+++ .|+.|+|||+.+++.+..+..|...
T Consensus 98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~-- 170 (493)
T PTZ00421 98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ-- 170 (493)
T ss_pred -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc--
Confidence 999999987652 455555 88999999999975 4554 6999999999999988888888774
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccc-eEEEEeCCCCCEEEEEe----CCCcEEEEEECCCCc
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH-IACFTLTLDGLLLATAS----TRGTLIRIFNTVDGT 250 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~-i~~l~~sp~g~~l~s~s----~dg~~I~vwd~~~~~ 250 (415)
+.++.+++++.+|++ ++.|+.|++|+.+ ++.+..+.+|.+. +..+.|.+++..|++++ .|+. |++||+++..
T Consensus 171 V~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA 248 (493)
T ss_pred eEEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence 555566667777776 7789999999876 4566777888765 45678899887777654 4788 9999998764
Q ss_pred -EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977 251 -RLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVV 295 (415)
Q Consensus 251 -~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~ 295 (415)
++..+... ....+....|++++++|++++ .|+.|++||+.+++.
T Consensus 249 ~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 249 SPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 33333321 334566778999999999887 599999999998764
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=6.7e-24 Score=197.75 Aligned_cols=235 Identities=15% Similarity=0.217 Sum_probs=203.0
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
+-+.+..|-|.++++++|. .|.+.|||+.....+-. .+.|...+..+...|++..+++++.| .+|++||..-
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et--i~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l 485 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET--IRAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKL 485 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh--hhccccceeeeeecCCCCceEEecCC-----cEEEEEeEEE
Confidence 3688899999999999999 99999999987554433 34788899999999999999999998 9999999421
Q ss_pred -----CCE--------EEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 124 -----SRC--------IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 124 -----~~~--------~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
|.. .++++....|.++.++||+++++ .|++++||-+.+.+..-.+.+|.-|+.++.++++ +.
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D--Sk 563 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD--SK 563 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC--cC
Confidence 211 12344678999999999999999 7999999999999999999999987666666665 45
Q ss_pred EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
+++ +|+.|.+|++|-.+. .+-+.+.+|+..|.++.|-|...++.+++.|+. |+-||-...+.++.+.+ |...|++
T Consensus 564 liv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c 639 (888)
T KOG0306|consen 564 LIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC 639 (888)
T ss_pred eEE-eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence 665 588999999998874 677889999999999999999999999999999 99999999999999999 7889999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
++.+|+|.++++++.|.+|++|.-..
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999998654
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-24 Score=174.84 Aligned_cols=238 Identities=13% Similarity=0.154 Sum_probs=186.9
Q ss_pred CCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEE
Q 014977 42 VDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~v 118 (415)
.-.+.+..++|+++.. .+++++ ||.++|||+..... ....++.|...|.++.|++ +...+++++-| ++|++
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKL 131 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWD-----GTIKL 131 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccC-----CceEe
Confidence 3467899999998654 444555 99999999654222 3334678999999999987 44555666877 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
|+....+.++++. |...|....|+|... +++ .|+++++||++.......+..|.. .+.+..++.-+..++++|
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATG 209 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEec
Confidence 9999999999998 899999999999643 344 799999999976444444777775 455555555445566678
Q ss_pred CccCeEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEe
Q 014977 194 LQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 194 ~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~ 269 (415)
+.|+.|+.|+.+. .++..+.+|.-.|..++|||.. .+||+++.|-+ ++|||...+.. +.+... |..-+..+.|
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dw 286 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDW 286 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEecccc
Confidence 9999999999875 5677889999999999999965 58999999999 99999876543 334443 7778999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEc
Q 014977 270 SP-NVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 270 sp-dg~~l~s~s~dg~i~vwd~ 290 (415)
++ ++.++|+.+.|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 97 6779999999999999983
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=7.7e-23 Score=195.46 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=201.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|.+.|++++|..-+..|++|+ |.+++|||+.+++.... +.+|...+.++...+ ..+++|+.| .+|+
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--l~gh~stv~~~~~~~--~~~~sgs~D-----~tVk 314 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--LQGHTSSVRCLTIDP--FLLVSGSRD-----NTVK 314 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--ecCCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence 3789999999999998888999999 99999999998776655 446777777665443 455667777 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
+|++.+++++..+. |..+|+++..+.+-.+.. .|+.|++||+.++++++.+.+|.. .+.++.+++. ..+ ++|+.
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~-~Sgs~ 390 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRL-LSGSL 390 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceE-Eeeee
Confidence 99999999999999 999999999993333323 799999999999999999999988 5555555553 344 45889
Q ss_pred cCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 196 RGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 196 dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
|++|++|+.... ++..+.+|..-+..+.+ .+++|++++.|+. |++||..++++++++.+. |...|..+++. .
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~ 464 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--K 464 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--c
Confidence 999999998876 88999999998866654 6789999999999 999999999999999875 45678888876 4
Q ss_pred CEEEEEeCCCeEEEEEceecccCCCC
Q 014977 274 QWLAVASDKGTVHIFSLRVRVVGEDS 299 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~~~~~ 299 (415)
..+++++.||++++||+++++...++
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ceEEEEecCCeeEEEecccCchhhhh
Confidence 67889999999999999999876533
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=197.27 Aligned_cols=244 Identities=15% Similarity=0.191 Sum_probs=190.1
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--------------------------------C--------
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--------------------------------S-------- 124 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--------------------------------~-------- 124 (415)
.|...|.++.|+++|++||+++.| +.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 788899999999999999999998 9999998654 0
Q ss_pred --------------------CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 125 --------------------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 125 --------------------~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
++++.+. |.+.|.+|.|+.++.+|. .|.+|++|++...+++..|. |.+.+++++|.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0111222 667899999999998888 89999999999999999885 66666777777
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD- 260 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~- 260 (415)
|-.+. +++ +|+-|+.|+||......+.....-..-|++++|.|||++.++|+.+|. +++|++...+....+....+
T Consensus 419 PvDDr-yFi-SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 419 PVDDR-YFI-SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ccCCC-cEe-ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeecc
Confidence 76664 444 599999999999999888888777799999999999999999999999 99999987776655432212
Q ss_pred -----cccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCc
Q 014977 261 -----RAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS 334 (415)
Q Consensus 261 -----~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (415)
...|+++.|.|.. ..|++.+.|..|+|||.+..+...+.+...
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------------------------------- 544 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------------------------------- 544 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------
Confidence 1279999999743 357777889999999997766433211110
Q ss_pred ccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977 335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH 391 (415)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~ 391 (415)
.........|+.+ ..|++++.|..||+|.++...
T Consensus 545 -----------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 545 -----------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -----------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 0022334677778 778888889999999997644
No 87
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=193.13 Aligned_cols=229 Identities=10% Similarity=0.126 Sum_probs=174.5
Q ss_pred ccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCcee------EEEeccCCCeeEEEEeeeCCeE-EEEecCCC
Q 014977 38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET------FRRDLKSGGFRIVEMLFRCNIL-ALVGAGDN 108 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d 108 (415)
....+|.+.|.+++|+|+ +.+||+|+ |+.|+||++.+.... ....+.+|...+.++.|+|++. ++++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 346789999999999997 78999999 999999999753211 1123457788899999999875 45788877
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe---c
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS---H 182 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~ 182 (415)
+.|++||+.+++.+..+.+...|.+++|+++|.+++ .|+.|+|||+++++.+..+.+|........+. +
T Consensus 148 -----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 148 -----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred -----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999999888888888999999999999888 58999999999999999998887654333322 2
Q ss_pred CCCceEEEEeCCcc---CeEEEEEcCC--cceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 183 HSSTSVLACPGLQR---GQVRIEHFGL--NMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 183 ~~~~~~l~~~g~~d---g~v~i~~~~~--~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
.+++.+|+++|..+ ++|+||+.+. .++..+.. +.+.+......++|.++++|+.|+. |++|++..+. +..+
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l 300 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKV 300 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEee
Confidence 35666777766443 4799999873 44444332 2333334444567899999999999 9999997764 4455
Q ss_pred ecCCCcccEEEEEeCCCC
Q 014977 256 RRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg 273 (415)
....+..++.+++|.|..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 544456788999999964
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.2e-23 Score=182.84 Aligned_cols=241 Identities=19% Similarity=0.236 Sum_probs=192.6
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~ 117 (415)
....+..|+++.|-.||++||+|. .|.|+|||+.+ ..++ +.+..|...+....|++. +..+++|++| +.++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k 136 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVK 136 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH-HHHhhccCceeEEEecccCCeEEEecCCC-----ceEE
Confidence 445678899999999999999999 99999999665 2222 345688888999999984 5777888887 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEE-E---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVV-V---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~-~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+||+.+......+. |...|++.+|+|....+ + .||+|++||++.. ..+..+. |..++..+.+- |.+..+++
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l--psgs~ias 213 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL--PSGSLIAS 213 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEc--CCCCEEEE
Confidence 99999888654565 99999999999975543 3 7999999999876 5555554 55555555444 45567777
Q ss_pred eCCccCeEEEEEcC-Ccc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 192 PGLQRGQVRIEHFG-LNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 192 ~g~~dg~v~i~~~~-~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+| ...|++|+.. +.. +..+..|...|+|+.+..++..|++++-|+. |++||+.+.+.+..+. ..++|.+++.
T Consensus 214 Ag--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiav 287 (487)
T KOG0310|consen 214 AG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAV 287 (487)
T ss_pred cC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEe
Confidence 55 4689999987 433 3344459999999999999999999999999 9999988888888887 6789999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|+++.++.|-.+|.+.+=+...+++.
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cCCCceEEEecccceeeeehhhcccCC
Confidence 999999999999998777655555543
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-22 Score=178.76 Aligned_cols=249 Identities=17% Similarity=0.216 Sum_probs=207.5
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee---EEE-----------ec--cCCCeeEEEEeeeCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRR-----------DL--KSGGFRIVEMLFRCNI 99 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~---~~~-----------~~--~~~~~~~~~~~~~~~~ 99 (415)
......|.-+|.+++++|+.++..+++ ++.|.-|++.++... ... .. ..|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 345678999999999999999999999 999999998765432 111 01 1566778999999999
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCC--eEEEE-eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQIETLANLR 175 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~--~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 175 (415)
.++++++.| ..|.||+..+.+.++.+. |.+.|.+++|-.. ..+.+ .|+.|++|++.....+.++.+|..
T Consensus 215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-- 287 (479)
T KOG0299|consen 215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-- 287 (479)
T ss_pred cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc--
Confidence 999999998 999999999999999988 9999999999754 34444 899999999999988988988887
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
.+..+......+. +++|..|+++++|.........+.++.+.+.|++|-.+. .+++|+.+|. |.+|++...+++.+.
T Consensus 288 ~v~~IdaL~reR~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 288 GVLGIDALSRERC-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKPLFTS 364 (479)
T ss_pred ceeeechhcccce-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCceeEe
Confidence 5666666655554 566889999999999887778889999999999997654 6899999999 999999999888776
Q ss_pred ecCCC----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
...++ ...|++++..|...++|+|+.+|.|++|.+..+-.
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 53211 12789999999999999999999999999998853
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.1e-23 Score=182.09 Aligned_cols=240 Identities=13% Similarity=0.208 Sum_probs=193.1
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+..+.|+++.|.++++++++++ |+.+++|+++..+... .+.+|...+.++.|.-....+++++.| .+|
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~vVsgs~D-----Rti 285 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSRVVSGSAD-----RTI 285 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--hhcccccceeeehhhccccceeecccc-----chh
Confidence 34567778899999999999888888 9999999999766544 355899999999998877779999988 999
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
++||+....+.+++-....+.+|..++...+-. .|++|++||.+...+......+. .+.++..+.++..+.+ ++.
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLs-ssR 361 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLS-SSR 361 (459)
T ss_pred hhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEee-ecC
Confidence 999999999998888788888888872221111 79999999999999988887766 3445555555656665 468
Q ss_pred cCeEEEEEcCCcc-eEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 196 RGQVRIEHFGLNM-IKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 196 dg~v~i~~~~~~~-~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
|.++.+.+.+... ...+.+. ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++|+
T Consensus 362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 8899996665544 3444322 234788999999999999999999 999999999999888875344479999999
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 014977 271 PNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd 289 (415)
|.|..|++++.++.+.+|.
T Consensus 441 ~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCchhhcccCCcceEecC
Confidence 9999999999999999993
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=192.32 Aligned_cols=244 Identities=15% Similarity=0.275 Sum_probs=198.5
Q ss_pred CCCCceE---EEEEe-CCCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 42 VDEIELI---SVSWN-QDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 42 ~h~~~V~---~l~~s-p~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.|...|. .+..+ |.+++|.+|+ ||.|++|+....... +...++.|..++.++....++..+++++.|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD---- 94 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD---- 94 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----
Confidence 4555555 55555 4667799999 999999998643321 334466788889999999999999999988
Q ss_pred CCeEEEEECCCC--CEEEEEE-ccCceeEEEE-cCCeEEEE---eCCeEEEEEcCCc--eeeeEEec------c-CCCcc
Q 014977 113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKL-SRDRIVVV---LEHKIYVYSFVDL--KLLHQIET------L-ANLRG 176 (415)
Q Consensus 113 ~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~-~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~------~-~~~~~ 176 (415)
.+|++|+...+ -++.++. |...|.++++ .++..+++ .|+.|.+||+.++ +.+..+.. . .....
T Consensus 95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99999998877 5666676 9999999999 77777777 7999999999876 33333211 1 22235
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
+.+++.++.+..++ +|+..+.+++|+.+ .+.+..+.+|...|..+..++||..+++++.||+ |++||+...+++.++
T Consensus 174 iYSLA~N~t~t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATY 251 (735)
T ss_pred eeeeecCCcceEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeE
Confidence 67777777775555 58899999998865 4678889999999999999999999999999999 999999999999999
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.. |...|+++.-+|+=.++++|+.||.|+.=|+++..
T Consensus 252 ~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 252 IV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred Ee--ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 88 77789999999999999999999999999998864
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.7e-22 Score=168.12 Aligned_cols=290 Identities=13% Similarity=0.187 Sum_probs=212.2
Q ss_pred CCCccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce------eE-------EEeccCCCeeEEEEeeeC-C
Q 014977 35 PQTAFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE------TF-------RRDLKSGGFRIVEMLFRC-N 98 (415)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~-~ 98 (415)
+.......|.+.|+++.+.+ .|+++++|. ||.|.|||++.... +. +..-..|.-.|..+.|-| |
T Consensus 34 ~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 34 NDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 34455678999999999987 688999999 99999999975321 00 011134566777777777 5
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCC---eEEEE---eCCeEEEEEcCCceeeeEEeccC
Q 014977 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQIETLA 172 (415)
Q Consensus 99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~---~~~~~---~d~~i~iwd~~~~~~~~~~~~~~ 172 (415)
.-.+.+++.| .+++|||..+-+....++.++.|.+-+++|- .-+++ .+-.|++-|+..|...+.+.+|.
T Consensus 114 tGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 TGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred Cceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 5667777877 9999999999999999999999999999884 33444 68899999999999999999998
Q ss_pred CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceE--------------EEecCccceEEEEeCCCCCEEEEEeC
Q 014977 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK--------------LINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~--------------~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
. .++++.|+|...+++++|+.||.|++|+.+.. +.. .-.+|.+.+..++|..+|.++++++.
T Consensus 189 ~--~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 189 D--GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred C--ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 8 77888888888899999999999999997642 222 23467788999999999999999999
Q ss_pred CCcEEEEEECCCCcEE-EEEecCCCcc---cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccccc
Q 014977 237 RGTLIRIFNTVDGTRL-QEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL 312 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~-~~~~~~~~~~---~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (415)
|.. +++|+..+|+.. ..+-...|.. .-..+. +.+...++.--.++.+.++.+-++....
T Consensus 267 d~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir--------------- 329 (397)
T KOG4283|consen 267 DDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVR--------------- 329 (397)
T ss_pred ccc-eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEE---------------
Confidence 999 999999887532 1111100111 111122 3333444444455777777777665332
Q ss_pred ccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
..+..-....++++.++ .+..++..||.++.|...+
T Consensus 330 -----------------------------------------~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 330 -----------------------------------------RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred -----------------------------------------eeecccceeeEEeecCchhhhhccccCCccccccccc
Confidence 11111124456788888 9999999999999997743
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.4e-22 Score=168.57 Aligned_cols=285 Identities=16% Similarity=0.191 Sum_probs=202.2
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEE-EEecCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILA-LVGAGDNSQ 110 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~ 110 (415)
.....+|.+.|++++|+.||+.||+++ |+.|+||+++.+... ++..++. ...+.+.|.||-.. +++.-..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g-- 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG-- 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC--
Confidence 356789999999999999999999999 999999999864432 1222211 14456778887543 3333333
Q ss_pred CCCCeEEEEECCC---CCEEEE--------EE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC
Q 014977 111 YPPTKVIIWDDHQ---SRCIGE--------FA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL 174 (415)
Q Consensus 111 ~~~~~i~vwd~~~---~~~~~~--------~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~ 174 (415)
.++++|.+.. |..... +. |...+..+-...++.+++ .|..|.+|+++ |+.+..+......
T Consensus 155 ---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 155 ---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred ---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 7899997533 221111 11 456677777778888887 69999999998 8888888766554
Q ss_pred cceEEEecCCCceEEEEeCCccCeEEEEEcC----C-----cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----L-----NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~----~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
..-.++ +|+|++++++| ..-.|++|..- + ..+..+++|...|..++|+++.+.+++.+.||. ++|||
T Consensus 231 n~~aav--SP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwd 306 (420)
T KOG2096|consen 231 NYDAAV--SPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWD 306 (420)
T ss_pred ccceee--CCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEee
Confidence 444444 55678998866 45678887642 2 346678999999999999999999999999999 99999
Q ss_pred CCC----C---cEEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCC
Q 014977 246 TVD----G---TRLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (415)
Q Consensus 246 ~~~----~---~~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (415)
+.- + +.+++..... ..+....++++|+|+.||.+. ...+++|..++++...+..
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e---------------- 369 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE---------------- 369 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH----------------
Confidence 742 1 2233321111 122344899999999988765 4459999999987543111
Q ss_pred CCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
++..+....++|+++++.++.|.|-.++++.-.+
T Consensus 370 ---------------------------------------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 370 ---------------------------------------DIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred ---------------------------------------HhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 1223556678999999999999999988886444
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2.4e-22 Score=186.38 Aligned_cols=285 Identities=12% Similarity=0.162 Sum_probs=220.2
Q ss_pred CCCCceEEEEEeCC-----------CCEEEEEe-CCcEEEEEccC--CceeEEEec------------------------
Q 014977 42 VDEIELISVSWNQD-----------YGCFAAGT-SCGFRIYNCEP--FKETFRRDL------------------------ 83 (415)
Q Consensus 42 ~h~~~V~~l~~sp~-----------g~~la~g~-d~~v~iw~~~~--~~~~~~~~~------------------------ 83 (415)
-|...|+.+.--|. ...|++++ |++|++|+++. ...++++.+
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 36666666655441 12577777 99999999974 122221110
Q ss_pred ---------cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCC---eEEEE-
Q 014977 84 ---------KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD---RIVVV- 149 (415)
Q Consensus 84 ---------~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~---~~~~~- 149 (415)
-+...++.+++.+|++..|++|..- |.++||++..-+....+. |...|.++.++.. .++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 1345568889999999999999987 999999999888877777 9999999999853 34555
Q ss_pred --eCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-----CccceE
Q 014977 150 --LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-----HDSHIA 220 (415)
Q Consensus 150 --~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-----~~~~i~ 220 (415)
.|.-|+|||.. ...+++++.+|...++.+.|+-++-+..+++ ++.|..|.+..... .....+.. ....++
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccceEE
Confidence 68999999984 4567888999999888888888776667766 45788887743332 11222222 246789
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCC
Q 014977 221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS 299 (415)
Q Consensus 221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~ 299 (415)
.++..|..+++++++.|.. |+|||+.+|+..+.|++.. |.+....+...|.|.|||+...|.++.++|+.++++..+.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 9999999999999999999 9999999999999998742 4467888999999999999999999999999999976432
Q ss_pred CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe
Q 014977 300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM 378 (415)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 378 (415)
..| ...+.-+.|.++ ..|+.++.
T Consensus 680 ~GH--------------------------------------------------------sE~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 680 TGH--------------------------------------------------------SEAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred cCc--------------------------------------------------------chheeeeeecccchhheeecC
Confidence 222 134556789998 99999999
Q ss_pred CCcEEEEEEec
Q 014977 379 DGSFYRCSFDP 389 (415)
Q Consensus 379 dg~~~~~~~~~ 389 (415)
||+|++|.++.
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999985
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=177.79 Aligned_cols=281 Identities=15% Similarity=0.178 Sum_probs=211.6
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~ 115 (415)
+......+.|+++.|+|...+|++++ |+.++||.++.........++-....+.+..|.|+|. .+++++.. ..
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky 281 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KY 281 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc-----eE
Confidence 44555678899999999999999999 9999999998644333333445667788888999987 77777765 88
Q ss_pred EEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 116 VIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+..||+.+.+..+.-. ....+....+++++.+++ ..|.|++....+++.+..++... .+..+.++.+++.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE 358 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence 9999999887654433 245677888999999888 68999999999999998887654 4556666677777
Q ss_pred EEEeCCccCeEEEEEcCCcce-EEEecCccce--EEEEeCCCCCEEEEEeCCCcEEEEEECCC------CcEEEEEecCC
Q 014977 189 LACPGLQRGQVRIEHFGLNMI-KLINAHDSHI--ACFTLTLDGLLLATASTRGTLIRIFNTVD------GTRLQEVRRGV 259 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~-~~~~~~~~~i--~~l~~sp~g~~l~s~s~dg~~I~vwd~~~------~~~~~~~~~~~ 259 (415)
|+++| .+|.|.+|+.+...+ +.+. ..+.| ++++.+++|.|||+|+..|. |.|||.++ .+++..+..
T Consensus 359 l~~~~-~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN-- 433 (514)
T KOG2055|consen 359 LLASG-GTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN-- 433 (514)
T ss_pred EEEEc-CCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence 77655 688999998876543 4443 33433 57788899999999999999 99999654 356666665
Q ss_pred CcccEEEEEeCCCCCEEEEEeC--CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977 260 DRAEIYSIALSPNVQWLAVASD--KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF 337 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (415)
-...|++|.|++|++.||.+|. +..+++-.+.+-..-
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF----------------------------------------- 472 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF----------------------------------------- 472 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-----------------------------------------
Confidence 5568999999999999987765 557887776655421
Q ss_pred cccccCcccccccceEEEEeC---CCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 338 MRGVLPKYFSSEWSFAQFHIP---EVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
..|..+ -+.+.+++|+|. +.+++|...|.+.+|.+
T Consensus 473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ---------------ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 111111 145678999998 77777777899999987
No 96
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=2e-21 Score=186.48 Aligned_cols=219 Identities=10% Similarity=0.100 Sum_probs=166.1
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCC--------EEEEEE-cc
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSR--------CIGEFA-FR 133 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~--------~~~~~~-~~ 133 (415)
.+.+++|+...... ...+.+|...|.++.|+|+ ..+|++++.| +.|++||+.++. ++..+. |.
T Consensus 53 ~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 53 IGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred eeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCC
Confidence 67899999876433 2345588899999999996 7889999988 999999987642 233444 88
Q ss_pred CceeEEEEcCCeEEE-E---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cc
Q 014977 134 SDVRSVKLSRDRIVV-V---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NM 208 (415)
Q Consensus 134 ~~i~~l~~~~~~~~~-~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~ 208 (415)
..|.+++|+|++..+ + .|+.|++||+++++.+..+.. .. .+.++++++++.+|++ ++.|+.|+||+.+. ..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~--~V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PK--KLSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CC--cEEEEEECCCCCEEEE-EecCCEEEEEECCCCcE
Confidence 999999999987654 3 699999999999887766653 33 5677778888888876 55899999988765 55
Q ss_pred eEEEecCccceEE-----EEeCCCCCEEEEEeCCC----cEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977 209 IKLINAHDSHIAC-----FTLTLDGLLLATASTRG----TLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 209 ~~~~~~~~~~i~~-----l~~sp~g~~l~s~s~dg----~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (415)
+..+.+|.+.+.. ..|++++.+|++++.++ . |+|||++. ++++..+....+.+.+......++|.++++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 6778889876543 33568989999888774 6 99999985 566666554323344444444567899999
Q ss_pred EeCCCeEEEEEceecc
Q 014977 279 ASDKGTVHIFSLRVRV 294 (415)
Q Consensus 279 ~s~dg~i~vwd~~~~~ 294 (415)
|+.|++|++|++..+.
T Consensus 281 GkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS 296 (568)
T ss_pred EECCCeEEEEEccCCc
Confidence 9999999999997653
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=186.00 Aligned_cols=242 Identities=12% Similarity=0.158 Sum_probs=194.7
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
-.|....+.|+|.|+|.+|.+++ ||.|++|+......... .+..+...+.++....+ .+++++.+ ++|.+|
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~y 81 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIACYSN--HFLTGSEQ-----NTVLRY 81 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEeeccc--ceEEeecc-----ceEEEe
Confidence 47899999999999999999888 99999999865422111 12124455555544444 66677766 999999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
....++.-..+. +.-++++++++.+|.+++ .|-.|++.++.+......+.+|.. .+.++.++|++.+||+ .+.
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAv-ss~ 158 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAV-SSC 158 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEE-Eec
Confidence 998887765554 788999999999999998 688899999999999999999988 5677788888889987 457
Q ss_pred cCeEEEEEcCCcce-EEEec-------C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 196 RGQVRIEHFGLNMI-KLINA-------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 196 dg~v~i~~~~~~~~-~~~~~-------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
||.|++|+.+...+ ..+.+ - ...+..++|+|+|..|+....|+. |++|+..+++....+....+...+..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence 99999999876432 22221 1 345678999999888888888999 99999999999999988766667999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
++|+|.|+|||+++.||.|.|||+++-+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch
Confidence 9999999999999999999999999844
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.4e-22 Score=180.92 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=192.5
Q ss_pred CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
-.|.+-|.++.++...+++.+|+.|.|+|||+...+. +...........+..+...+|+..|+.|+.- .++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ceee
Confidence 4588889999999999999999999999999964221 1222223566778888999999998888876 9999
Q ss_pred EEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
|||+..-......+ ......+++.+||.++.+ .||.|.|||+.+...+..|++|..... ++..+++|..|.
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas--cIdis~dGtklW- 567 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--CIDISKDGTKLW- 567 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--eEEecCCCceee-
Confidence 99987665443333 245678899999998877 899999999999999999999998554 455555566665
Q ss_pred eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
+|+-|.+|+.|+.+......-....+.|.++-.+|++.+|+.|-+++. +.|... ++...+.+.. |++.|.++.|.+
T Consensus 568 TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~-skp~kyqlhl--heScVLSlKFa~ 643 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHT-SKPEKYQLHL--HESCVLSLKFAY 643 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEec-CCccceeecc--cccEEEEEEecc
Confidence 488999999998775433222234678999999999999999999999 888876 3444445555 888999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceeccc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.|+++++.+.|+.+..|...-|..
T Consensus 644 cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred cCceeeecCchhhhhhccCccccc
Confidence 999999999999999999877763
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.3e-21 Score=162.74 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=183.4
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.....+.|.++.|+|.+..|++++ ||.+++|++....... .+ .+...+.+++|.++...+.+ +-| |.|+.
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~-~~~~plL~c~F~d~~~~~~G-~~d-----g~vr~ 79 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KF-KHGAPLLDCAFADESTIVTG-GLD-----GQVRR 79 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--he-ecCCceeeeeccCCceEEEe-ccC-----ceEEE
Confidence 444577899999999999999888 9999999998764333 34 67888999999986666555 444 99999
Q ss_pred EECCCCCEEEEEEccCceeEEEEcCCe-EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 119 WDDHQSRCIGEFAFRSDVRSVKLSRDR-IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
+|+.++.....-.|...|.+|.+.+.. .++. .|++|++||.+.......+.... .+.++...++ .|++ |..
T Consensus 80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~--~LvV-g~~ 153 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGN--RLVV-GTS 153 (323)
T ss_pred EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCC--EEEE-eec
Confidence 999999988878899999999999754 4444 89999999998755554444333 5666766654 3443 567
Q ss_pred cCeEEEEEcCCcceE-E--EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCC-------c
Q 014977 196 RGQVRIEHFGLNMIK-L--INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVD-------R 261 (415)
Q Consensus 196 dg~v~i~~~~~~~~~-~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~-------~ 261 (415)
+..|.+|+++.-... + -..-+-.+.++++-|++.=.+.++-||. |.+=.+... +....|+.|.. -
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 899999887753221 1 1233567889999998888999999999 887666554 33445554211 1
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
-+|++|+|+|-...||+|+.||.|.+||+.+.++..
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence 279999999999999999999999999999988653
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5e-22 Score=168.14 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=224.8
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|++.|+.++.......+.+++ |.+.+||.++++..+.... +|...+.++.|++.+.++++++.| ++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD-----~t 213 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGD-----ET 213 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCC-----cc
Confidence 456789999999999988888888888 9999999999988776644 899999999999999999999887 88
Q ss_pred EEEEE------CCC------------------------------C----CEEEEEE-ccCceeEEEEcCCeEEEE---eC
Q 014977 116 VIIWD------DHQ------------------------------S----RCIGEFA-FRSDVRSVKLSRDRIVVV---LE 151 (415)
Q Consensus 116 i~vwd------~~~------------------------------~----~~~~~~~-~~~~i~~l~~~~~~~~~~---~d 151 (415)
-.||. +.. + .++..+. |...|.+..|...+..++ .|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 88886 110 0 1122333 667777778877777766 79
Q ss_pred CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCC
Q 014977 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~ 229 (415)
.+..+||+++++.++.+.+|.....-++ .+|..++++ +.+.|.+.++|+.+. ..+..|++|...|+++.|.-+.
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcs--tHptQrLVv-TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCS--THPTQRLVV-TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD- 369 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccc--cCCcceEEE-EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence 9999999999999999999988555444 445555554 578999999999875 4567899999999999998776
Q ss_pred EEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCc
Q 014977 230 LLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQ 308 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 308 (415)
.+++|+.|.+ |+|||+++. .++.++. ...+++.++.+..+..|+.--++..|++||+....-..
T Consensus 370 ~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR----------- 434 (481)
T KOG0300|consen 370 RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR----------- 434 (481)
T ss_pred ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----------
Confidence 4889999999 999999876 4677777 45689999999988899988888899999998765321
Q ss_pred ccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC---CEEEEEEeCCcEEEE
Q 014977 309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYRC 385 (415)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~dg~~~~~ 385 (415)
||+. . -+-...-+++|+|..+ ..++++|-|-.+.-|
T Consensus 435 ---------------------------------lPrt---s-----RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 435 ---------------------------------LPRT---S-----RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred ---------------------------------CCcc---c-----ccccceeeeeeeccccCcccccccccccceeeee
Confidence 1211 0 0111234677899876 889999999999999
Q ss_pred EEec
Q 014977 386 SFDP 389 (415)
Q Consensus 386 ~~~~ 389 (415)
++.-
T Consensus 474 ~in~ 477 (481)
T KOG0300|consen 474 KINT 477 (481)
T ss_pred Eecc
Confidence 8753
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-22 Score=165.87 Aligned_cols=246 Identities=14% Similarity=0.149 Sum_probs=190.3
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP 113 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~ 113 (415)
.....|++.|..+...--|++||+++ |+.|+|+...+... .+...|.+|...+..+.|.. -|.+|++++.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD----- 79 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD----- 79 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-----
Confidence 35678999999999999999999999 99999999987664 55566778999999888875 78999999998
Q ss_pred CeEEEEECCCCCEEEEEE---ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCc-e--eeeEEeccCCCcceEEEec
Q 014977 114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDL-K--LLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~ 182 (415)
+.|.||.-++++-.+... |...|++++|.|.+ ..++ .||.|.|++.+.. . .......|...+..++++|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 999999988775444443 89999999999864 4444 7999999998643 1 1222345655455555555
Q ss_pred CCC-c-----------eEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCCC----CEEEEEeCCCcEEEE
Q 014977 183 HSS-T-----------SVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDG----LLLATASTRGTLIRI 243 (415)
Q Consensus 183 ~~~-~-----------~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I~v 243 (415)
..- + +.|++ |+.|..|+||..+. .....+.+|...|+.++|.|.- .+||+++.||+ +.|
T Consensus 160 a~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viI 237 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VII 237 (299)
T ss_pred cCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEE
Confidence 411 1 33554 77899999998887 5556689999999999999964 47999999999 999
Q ss_pred EECCCC--cE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 244 FNTVDG--TR-LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 244 wd~~~~--~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
|-.... .- ...+.. ....++.+.||..|..|++++.|+.|.+|.-..
T Consensus 238 wt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 976521 11 112222 456899999999999999999999999998544
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.6e-22 Score=177.54 Aligned_cols=245 Identities=11% Similarity=0.141 Sum_probs=184.5
Q ss_pred cCCCCCCceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeE--------EEeccCCCeeEEEEeeeCC-eEEEEecCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETF--------RRDLKSGGFRIVEMLFRCN-ILALVGAGD 107 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~ 107 (415)
..-.|.+.|+.+.+-|....++ +++ .+.+.|||........ ...+.+|......++|++. ...+++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 4467999999999999776555 555 8999999996432211 1133355555667888874 355677777
Q ss_pred CCCCCCCeEEEEECCCCCE-------EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcC--CceeeeEEeccCC
Q 014977 108 NSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV--DLKLLHQIETLAN 173 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~-------~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~--~~~~~~~~~~~~~ 173 (415)
| +.|++||+..... ...+. |...|.+++|++....++ .|+.+.|||++ +.+..+....|..
T Consensus 199 d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 D-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred C-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 6 9999999765322 23334 899999999998654443 79999999999 5566667778888
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCC-
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG- 249 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~- 249 (415)
++.+++|.+. +.+++++|+.|++|.+|+++. .++..+.+|...|..+.|+|+. ..||+++.|+. +.|||+..-
T Consensus 274 ~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig 350 (422)
T KOG0264|consen 274 EVNCVAFNPF--NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG 350 (422)
T ss_pred ceeEEEeCCC--CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence 6665555554 455666799999999999875 6788899999999999999965 58999999999 999998642
Q ss_pred -------------cEEEEEecCCCcccEEEEEeCCCCCE-EEEEeCCCeEEEEEceec
Q 014977 250 -------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 250 -------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~~~~ 293 (415)
+++..-.+ |...|..+.|+|...+ |+++++|+.+.||+....
T Consensus 351 ~eq~~eda~dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cccChhhhccCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12223233 8889999999998775 668999999999998743
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=3.3e-22 Score=179.17 Aligned_cols=206 Identities=16% Similarity=0.191 Sum_probs=151.9
Q ss_pred eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE--ccCceeEEEEcCCeEEEE---eCC
Q 014977 82 DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA--FRSDVRSVKLSRDRIVVV---LEH 152 (415)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~ 152 (415)
.+.+|...|.++.+.+.|..+++|+.| ..|++||+... +..+.+. ....|+++.|++.+..++ ...
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 455788889999999999999999998 99999997542 2223333 467899999999876655 567
Q ss_pred eEEEEEcCCceeeeEE------------eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEEe-----
Q 014977 153 KIYVYSFVDLKLLHQI------------ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLIN----- 213 (415)
Q Consensus 153 ~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~~----- 213 (415)
..+|+|-...+.+... ++|...+++.+|+|...+.+| +++.||+++||+.... ..+.++
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl--T~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL--TCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE--EecCCCcEEEEecCCchhheeEEeeccCC
Confidence 7899995443333222 244444445556665555444 5679999999997753 233333
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
+..-+++.++|+++|++||+|..||. |.+|+..... +...++.. |.. .|++|.||+||++|++-+.|+++++||
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeec-cCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 23457889999999999999999999 9999975432 22233322 444 899999999999999999999999999
Q ss_pred ceecccC
Q 014977 290 LRVRVVG 296 (415)
Q Consensus 290 ~~~~~~~ 296 (415)
++.-++.
T Consensus 393 Lrq~kkp 399 (641)
T KOG0772|consen 393 LRQFKKP 399 (641)
T ss_pred ccccccc
Confidence 9987754
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-20 Score=158.13 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=159.9
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eCCeEEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV 156 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d~~i~i 156 (415)
+......+.++.|+.+|..+++++.| ..+++||..+++.++++. .+..+..++|......++ .|.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 43456778999999999999998887 899999999999999998 566788888865544444 4889999
Q ss_pred EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATAS 235 (415)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (415)
.++.+.+.++.+.+|...+..++++|-. ..+++ ++.|++|++|+.+. ++...+..... ..++|+|+|-++|++.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS-~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLS-SSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEe-cccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec
Confidence 9999999999999999966555555544 45554 78999999999984 34444433333 4578999999999999
Q ss_pred CCCcEEEEEECCCC--cEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 236 TRGTLIRIFNTVDG--TRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 236 ~dg~~I~vwd~~~~--~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.... |++||++.- .+..++.-. ......+.|.|||||++|+.++..+.+++.|--+|..
T Consensus 160 ~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 160 GSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred CCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 8887 999999864 344444432 2456899999999999999999999999999888874
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-21 Score=161.29 Aligned_cols=224 Identities=13% Similarity=0.158 Sum_probs=187.2
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd 158 (415)
+++|...+..+.|+.+|.+|.+++.| ....||-..+|+.+.++. |.+.|.++.++.+...++ .|.++++||
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 45889999999999999999999998 999999989999999999 999999999999988888 799999999
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeC----CccCeEEEEEcC--------CcceEEEecCccceEEEEeCC
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG----LQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTL 226 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp 226 (415)
+++|+++..++... ++..+.|++ .+.+++++. +..+.|.+++.+ ..+...+..+...++.+-|.|
T Consensus 81 v~tGk~la~~k~~~-~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 81 VETGKQLATWKTNS-PVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred cCCCcEEEEeecCC-eeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 99999999987644 344455555 444554432 134566675544 245778888899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCcEEEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCC
Q 014977 227 DGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST 305 (415)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 305 (415)
-+++|++|.+||. |.+||+++|+.+..- .. |...|++|.+++|..++++++.|.+-++||+.+-+..++....
T Consensus 158 l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te--- 231 (327)
T KOG0643|consen 158 LGETIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE--- 231 (327)
T ss_pred cCCEEEEecCCCc-EEEEEcccCceeeechhh--hccccccccccCCcceEEecccCccceeeeccceeeEEEeeec---
Confidence 9999999999999 999999998655433 44 7779999999999999999999999999999998887777776
Q ss_pred CCcccccccCCCCCccc
Q 014977 306 PSQSTELLNHSSSFDTL 322 (415)
Q Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (415)
||+|.+.|++..+..
T Consensus 232 --~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 232 --RPVNTAAISPLLDHV 246 (327)
T ss_pred --ccccceecccccceE
Confidence 889999998877743
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-20 Score=151.31 Aligned_cols=245 Identities=12% Similarity=0.147 Sum_probs=188.3
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeC----CeEEEEecCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC----NILALVGAGDNS 109 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~ 109 (415)
....-|++.|+|.+|+|+|+++|+|+ |..|++..++..... ....|.-|...+..++|.. .+.+|++++..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag- 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG- 161 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence 34567899999999999999999999 999998766432111 1122334666677777754 35777777662
Q ss_pred CCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--C---CcceEEE
Q 014977 110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--N---LRGLCCL 180 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~---~~~~~~~ 180 (415)
|..|.+-|..+|+....+. |.+.|.++-- -++-+++ .|.+|++||++-..++.++.... . ...+.++
T Consensus 162 ---dc~iy~tdc~~g~~~~a~sghtghilalys-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 162 ---DCKIYITDCGRGQGFHALSGHTGHILALYS-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred ---cceEEEeecCCCCcceeecCCcccEEEEEE-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4778888889999998888 8888887643 3344455 79999999998888887774322 1 1356677
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---c-EEEEE
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---T-RLQEV 255 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~-~~~~~ 255 (415)
+.+|.+++|++ |-.|....+++.++ +.++.+..|...|.++.|+|...|+++++.|.. |++-|+... + ++..+
T Consensus 238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEE
Confidence 88888988876 88899999976654 678899999999999999999999999999999 999998532 1 22233
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.. |...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 316 ~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred Ee--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 33 77888899999999889999999999999764
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.2e-22 Score=179.70 Aligned_cols=236 Identities=12% Similarity=0.227 Sum_probs=206.1
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
....-|.++.+.|||+.|++|+ -.++.|||+..-...+...+......+.+++.++|.++..++..| |.|.|||
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-----GnI~vwD 537 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-----GNIAVWD 537 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence 3467799999999999999999 889999999865555555555556677888899999888888777 9999999
Q ss_pred CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+.+...++.++ |...+.||.+++||..+- .|++|+.||+++++.+.... ....++.+...|.+.++++ |-.+
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---F~SQIfSLg~cP~~dWlav-GMen 613 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---FSSQIFSLGYCPTGDWLAV-GMEN 613 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---hhhhheecccCCCccceee-eccc
Confidence 99999999999 999999999999998887 79999999999987765443 3336788888899999987 8889
Q ss_pred CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (415)
+.+.+-..++.....+.-|++-|.++.|.+.|+++++.+.|.. +..|.+.-|..+...+ ..+.|.++.+|-|.++|
T Consensus 614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI 689 (705)
T ss_pred CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence 9999977778778888899999999999999999999999999 9999999999887776 46789999999999999
Q ss_pred EEEeCCCeEEEEEc
Q 014977 277 AVASDKGTVHIFSL 290 (415)
Q Consensus 277 ~s~s~dg~i~vwd~ 290 (415)
++|+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888876
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=174.33 Aligned_cols=247 Identities=12% Similarity=0.163 Sum_probs=193.0
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
.....|.+.|..|++.. +..|.+|.|.+|+.|.++.. .. ..+ .+...+..+..+.....++++| ..|.
T Consensus 103 ~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--p~-~ti-lg~s~~~gIdh~~~~~~FaTcG-------e~i~ 170 (433)
T KOG0268|consen 103 RTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--PL-HTI-LGKSVYLGIDHHRKNSVFATCG-------EQID 170 (433)
T ss_pred heeecccCceeeEEecc-cceEEecCCcceeeeeccCC--cc-eee-eccccccccccccccccccccC-------ceee
Confidence 44678999999999988 55666666999999998752 11 122 3444555666666677788877 5799
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
|||.....+++.+. ....|.++.|+|....++ .|+.|.+||+++..+++.+.... ....++|+|+. +..++
T Consensus 171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPea-fnF~~ 246 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEA-FNFVA 246 (433)
T ss_pred ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---cccceecCccc-cceee
Confidence 99999999999999 677899999999776655 79999999999998887765443 23455666644 44456
Q ss_pred CCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 193 GLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 193 g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
+++|..++.++.+. .++....+|.+.|.++.|||.|+.+++|+.|.+ |+||.++.+.....+... ....|.++.||
T Consensus 247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S 324 (433)
T KOG0268|consen 247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYS 324 (433)
T ss_pred ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEEe
Confidence 88999999977654 667788899999999999999999999999999 999999877654333221 23469999999
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
.|.+++++||+|+.|++|.-...++...++.+
T Consensus 325 ~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r 356 (433)
T KOG0268|consen 325 MDSKYIISGSDDGNVRLWKAKASEKLGVITPR 356 (433)
T ss_pred ccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence 99999999999999999998877765444433
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.9e-21 Score=164.16 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=195.1
Q ss_pred CCCCCCCCCcccccccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEE
Q 014977 15 GPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEM 93 (415)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
++.-.-..|..+-+-.......+...-.|..++.+++|.++. .+++|+ ||.|+.+|+++..... +..|...+.++
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~---igth~~~i~ci 100 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ---IGTHDEGIRCI 100 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee---eccCCCceEEE
Confidence 333444457777777777777777788999999999999855 555666 9999999999866543 33788889999
Q ss_pred eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccC
Q 014977 94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA 172 (415)
Q Consensus 94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 172 (415)
.+.+....+++|+.| +.|++||.+....+..+.....|.++....+..++. .+..+.+||+++.....+.....
T Consensus 101 ~~~~~~~~vIsgsWD-----~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~ 175 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWD-----KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS 175 (323)
T ss_pred EeeccCCeEEEcccC-----ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccc
Confidence 999877788888888 999999998876777777777999999998888886 89999999998766544332222
Q ss_pred C--CcceEEEecCCCceEEEEeCCccCeEEEEEcC-C----cceEEEecCc---------cceEEEEeCCCCCEEEEEeC
Q 014977 173 N--LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L----NMIKLINAHD---------SHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 173 ~--~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~----~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~ 236 (415)
- ....+++.|+..| .++ ++-+|.|.+...+ . .....++.|. -+|++|+|+|-...||||+.
T Consensus 176 lkyqtR~v~~~pn~eG--y~~-sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 176 LKYQTRCVALVPNGEG--YVV-SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred ceeEEEEEEEecCCCc--eEE-EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 1 2244555554444 333 6789999993322 2 3344566664 37899999999889999999
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
||. |.+||+.+.+.+..+.. ....|..++|+.||..||+++.
T Consensus 253 DG~-V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGI-VNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cce-EEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence 999 99999999999999887 6678999999999999999874
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=5.3e-21 Score=168.18 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=198.5
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....||...|+.+.|+|+...+++++ |-.|+||.......... ...|...+..+..++++.+++++++| ++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~~V~~ls~h~tgeYllsAs~d-----~~ 326 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--SRPHEEPVTGLSLHPTGEYLLSASND-----GT 326 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--cccccccceeeeeccCCcEEEEecCC-----ce
Confidence 345789999999999999999999999 99999999876443322 33788889999999999999999998 99
Q ss_pred EEEEECCCCCEEEEEEcc---CceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 116 VIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
..+.|+.++..+....+. -.+++.+|+|||.+++ .|+.++|||+..+..+..|.+|..+ +.++++..+|.+|
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~--vk~i~FsENGY~L 404 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP--VKAISFSENGYWL 404 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc--eeEEEeccCceEE
Confidence 999999999998888764 4589999999999998 7999999999999999999998884 5566667778888
Q ss_pred EEeCCccCeEEEEEcCC-cceEEEecC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--CCcEEEEEecCCCcccEE
Q 014977 190 ACPGLQRGQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~ 265 (415)
++ +.+|+.|++|+++. +..+++... ...+.++.|.+.|.+|+.++.|=. |++++-. ....+..+.. |.+..+
T Consensus 405 at-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st 480 (506)
T KOG0289|consen 405 AT-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLST 480 (506)
T ss_pred EE-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccc
Confidence 87 56899999999876 334444432 347999999999999999988755 5555533 4456666665 677889
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
.+.|....+++++++.|..++++.+
T Consensus 481 ~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999988865
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.6e-22 Score=185.21 Aligned_cols=241 Identities=12% Similarity=0.195 Sum_probs=186.1
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEE--Eec---cCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeE
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFR--RDL---KSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~--~~~---~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i 116 (415)
-+....+|+.+++-..++.++...++||.+.+...... ..+ +.-...+.++.|.. ...++++++.. |.|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i 112 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVI 112 (839)
T ss_pred cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcE
Confidence 35678889999999999999988889998875432221 111 11223344566664 34677888877 999
Q ss_pred EEEECCC---CCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 117 IIWDDHQ---SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 117 ~vwd~~~---~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
.+||+.. .+.+..+. |...++.+.|++....++ .||.|++||++..+...++.+....+.-+.|++.+...
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~- 191 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK- 191 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce-
Confidence 9999877 45555565 999999999998765555 79999999999888888888777777778888887543
Q ss_pred EEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccE
Q 014977 189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEI 264 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v 264 (415)
++ ++.+.|.+++|+++. ++...+.+|.++|.++.|+|++.+||+|+.|+. |+|||+.+++ .+.++. ...+|
T Consensus 192 F~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv 266 (839)
T KOG0269|consen 192 FA-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPV 266 (839)
T ss_pred EE-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---eccee
Confidence 33 477899999999876 567788999999999999999999999999999 9999997664 344444 35689
Q ss_pred EEEEeCCCCCE-EEEEe--CCCeEEEEEceecc
Q 014977 265 YSIALSPNVQW-LAVAS--DKGTVHIFSLRVRV 294 (415)
Q Consensus 265 ~~l~~spdg~~-l~s~s--~dg~i~vwd~~~~~ 294 (415)
..+.|-|+.++ ||+++ .|-.|+|||++.+-
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 99999998764 55554 47789999998764
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-21 Score=162.23 Aligned_cols=238 Identities=14% Similarity=0.173 Sum_probs=178.4
Q ss_pred eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
..|+.|++.|.+||+|. +|.|.|||+.+... ...+..|...+.+++|++++..|++++.| ..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCCC
Confidence 78999999999999999 99999999998663 23455888899999999999999999998 999999999999
Q ss_pred EEEEEEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCCceeeeEEeccC---CCcceEEEecCCCceEEEEeCCccCe
Q 014977 126 CIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 126 ~~~~~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
+++.+.+..+|....|+|.. +.++ .+..-.+.++.+++.. .+.... -.....+..+++.|+++++ |...|.
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIit-GtsKGk 176 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIIT-GTSKGK 176 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEE-ecCcce
Confidence 99999999999999999853 4444 4555556665542221 111111 1111122346778888876 888999
Q ss_pred EEEEEc-CCcceEEEecCc-cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-------c--EEEEEecCCCcccEEEE
Q 014977 199 VRIEHF-GLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------T--RLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 199 v~i~~~-~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~--~~~~~~~~~~~~~v~~l 267 (415)
+.+++. +.+++..++... ..|..+.++..|++|+.-+.|.. |+.|+++.- + +.+++..-.....-.++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 998554 446666666555 78899999999999999999999 999998621 1 11222222223345678
Q ss_pred EeCCCCCEEEEEeCC-CeEEEEEceecc
Q 014977 268 ALSPNVQWLAVASDK-GTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~d-g~i~vwd~~~~~ 294 (415)
+|+.+|.|++.++.. ..++||.-..|.
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcc
Confidence 999999999887754 479999987776
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.8e-19 Score=164.32 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=156.1
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
..+++++ |+.+++||+++.+...... . ...+..+.|++++..+ +++..+ +.|++||..+++.+..+....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCC
Confidence 4677777 9999999998766444332 2 2335568889987654 566655 899999999998887776445
Q ss_pred ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE
Q 014977 135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK 210 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~ 210 (415)
.+..+.++|++..++ .++.|++||+.+.+.+..+.... ....+.+++++.+++++......+.+|+.......
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 567889999987654 47899999999888777665332 23445666777777764433334555665543322
Q ss_pred EEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCcEEEEEecCC---C--cccEEEEEeCCCCCEEEE-EeCCC
Q 014977 211 LINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGV---D--RAEIYSIALSPNVQWLAV-ASDKG 283 (415)
Q Consensus 211 ~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~---~--~~~v~~l~~spdg~~l~s-~s~dg 283 (415)
........+..++|+|+|++|+++ ..++. |++||+.+++.+..+.... + ......++|+|+++++++ .+.++
T Consensus 151 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 222233455789999999988655 45888 9999999998777665310 1 112356889999998654 45567
Q ss_pred eEEEEEceecc
Q 014977 284 TVHIFSLRVRV 294 (415)
Q Consensus 284 ~i~vwd~~~~~ 294 (415)
.|.+||+++++
T Consensus 230 ~i~v~d~~~~~ 240 (300)
T TIGR03866 230 RVAVVDAKTYE 240 (300)
T ss_pred eEEEEECCCCc
Confidence 89999997765
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.8e-20 Score=169.15 Aligned_cols=241 Identities=14% Similarity=0.188 Sum_probs=193.3
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
...+|.++||+.+.+.||++. +|.|.||++... ......+++ ....+-.++|.+.+.++.++.. |.|.-||
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~EwD 96 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEWD 96 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEEe
Confidence 356799999999999999999 999999999873 333333434 3556777999977777766655 9999999
Q ss_pred CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+.+++.+..+. ..+.|.+++.+|.+..++ .||.++.++...++.............+.++++++++..++. |+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~-Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG-GSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe-cccC
Confidence 99999999988 789999999999887776 688888888877776655443333347899999999987775 8999
Q ss_pred CeEEEEEcCCcc-eEEEe-------c-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 197 GQVRIEHFGLNM-IKLIN-------A-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 197 g~v~i~~~~~~~-~~~~~-------~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
|.|++|+..... +.... . ...-|+++.|-.++ .|++|...|. |.+||...+.+++.+.. |.+.|.+|
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl~L 251 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVLAL 251 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcceeEE
Confidence 999999876533 22111 1 23346777777666 5899999999 99999999999999888 88899999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.++++.++++++.|+.|..|...+++.
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999888877753
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=162.49 Aligned_cols=208 Identities=14% Similarity=0.228 Sum_probs=170.1
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC------------C------CEEEEEE-ccCceeEEEEcC
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------------S------RCIGEFA-FRSDVRSVKLSR 143 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~------------~------~~~~~~~-~~~~i~~l~~~~ 143 (415)
+..|...+.+..|++||.++++|+.| ..|++.|++. + -.++++- |...|+++.|+|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34678888899999999999999998 9999999762 1 1344443 889999999999
Q ss_pred CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eE---EEecCc
Q 014977 144 DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IK---LINAHD 216 (415)
Q Consensus 144 ~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~---~~~~~~ 216 (415)
...+++ .|++|++||+......+.++.......+.+++++|.|.+|++ |..-.++++++.+... .. .-..|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-gTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-GTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-ecCCCceeEEeccceeEeeecCcccccc
Confidence 998888 799999999965433333333333336778888888888886 7788899998776532 22 124688
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+.|+++.+++.|++.++++.||. |+|||--+++++.++...+..+.|.+..|..+|++|++.+.|..+++|++.++...
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred cceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 99999999999999999999999 99999999999999887655668999999999999999999999999999999875
Q ss_pred C
Q 014977 297 E 297 (415)
Q Consensus 297 ~ 297 (415)
.
T Consensus 341 ~ 341 (430)
T KOG0640|consen 341 K 341 (430)
T ss_pred E
Confidence 4
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.4e-20 Score=156.48 Aligned_cols=243 Identities=17% Similarity=0.249 Sum_probs=173.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~ 113 (415)
...+|.+-|+++.|.+.|+++|+|+ |++++|||.+.... ......+.|...+..+.|.+ =|..+++++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D----- 82 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD----- 82 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-----
Confidence 4678999999999999999999999 99999999753322 22333456777888877764 58999999998
Q ss_pred CeEEEEECCC------C-C--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee------eeEEe---
Q 014977 114 TKVIIWDDHQ------S-R--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL------LHQIE--- 169 (415)
Q Consensus 114 ~~i~vwd~~~------~-~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~------~~~~~--- 169 (415)
+++.||.-.. + + ...++. ....|+++.|.|. |..++ .||.++||+..+.-. .+.+.
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 9999998311 1 1 122233 5789999999985 45555 799999999754322 22222
Q ss_pred --ccCCCcceEEEecCCC---ceEEEEeCCcc-----CeEEEEEcCC-----cceEEEecCccceEEEEeCCCC----CE
Q 014977 170 --TLANLRGLCCLSHHSS---TSVLACPGLQR-----GQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDG----LL 230 (415)
Q Consensus 170 --~~~~~~~~~~~~~~~~---~~~l~~~g~~d-----g~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g----~~ 230 (415)
...+.....|++|++. ..+||+ |+.+ +.++||.... ..+..+..|..+|+.|+|.|+- .+
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 0111123445555542 235554 6544 3677755433 2355577899999999999963 47
Q ss_pred EEEEeCCCcEEEEEECCCC--------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 231 LATASTRGTLIRIFNTVDG--------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
||+++.|| |+||.++.. +.+..+.. |.+.|+.+.|+-.|..|++.+.||.|++|..
T Consensus 242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999998 999998631 12333444 8889999999999999999999999999985
Q ss_pred e
Q 014977 291 R 291 (415)
Q Consensus 291 ~ 291 (415)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 4
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.1e-20 Score=156.34 Aligned_cols=229 Identities=16% Similarity=0.161 Sum_probs=176.9
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP 113 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~ 113 (415)
......|.++|.+++|+.||..+++|+ |+.+++||+.+++. .... .|...+..+.|-+ ....|++|+-|
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWD----- 136 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVA--AHDAPVKTCHWVPGMNYQCLVTGSWD----- 136 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeee--ecccceeEEEEecCCCcceeEecccc-----
Confidence 355678999999999999999999999 99999999998744 3333 5666666666655 45699999998
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee-eEEecc-CCCcceEEEecCCCceEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL-HQIETL-ANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~ 190 (415)
++|+.||++...++.++.....++++..-..-..++ .++.|.+|+++.+... +.+... .-...++++..+.++. +
T Consensus 137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--a 214 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--A 214 (347)
T ss_pred cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--E
Confidence 999999999999999999999999998877666666 8999999999664322 111111 1122455666666654 3
Q ss_pred EeCCccCeEEEEEc-CC--cceEEEecCcc---------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 191 CPGLQRGQVRIEHF-GL--NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 191 ~~g~~dg~v~i~~~-~~--~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
. |+-+|.+.|... .. +.-..++.|+. .|++|+|+|.-..|++++.||+ +.+||-.....++..+.
T Consensus 215 l-GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~- 291 (347)
T KOG0647|consen 215 L-GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET- 291 (347)
T ss_pred e-eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc-
Confidence 3 778999998333 22 44556666652 4778999999889999999999 99999877777777766
Q ss_pred CCcccEEEEEeCCCCCEEEEE
Q 014977 259 VDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~ 279 (415)
+..+|++.+|+.+|.++|-+
T Consensus 292 -~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 292 -HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -CCCccceeEecCCCCEEEEE
Confidence 88899999999999988755
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=167.70 Aligned_cols=241 Identities=19% Similarity=0.221 Sum_probs=193.4
Q ss_pred CCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCC-eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 43 h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
...+|.++.|.|+|. .+++++ ...++.||+++.+......+.+.. ..+..+..++++.+++..+.. |.|.+.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL 330 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL 330 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence 356789999999999 777777 888999999875543332222222 234456678888888888887 999999
Q ss_pred ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
...+++.+..++..+.|.+++|+.+++.++ .+|.|++||++...+++.+.... .+....++.+.++.++|+ |+..
T Consensus 331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~-GS~~ 408 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLAT-GSDS 408 (514)
T ss_pred hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEe-ccCc
Confidence 999999999999999999999999988777 58999999999999998886543 345567777777788886 9999
Q ss_pred CeEEEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCCCcEEEEEecCC-CcccEEE
Q 014977 197 GQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRGV-DRAEIYS 266 (415)
Q Consensus 197 g~v~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~ 266 (415)
|.|.||+.+. +++..+..-...|+++.|+|++++||.+|. +.. +++-.+.+......+.... .-+.|++
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEE
Confidence 9999987543 556666667789999999999999988775 456 9999988877766665421 2247999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
|+|+|.+.+||.|..+|.+.+|.+.
T Consensus 488 ~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999999999999975
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=2.4e-18 Score=154.31 Aligned_cols=273 Identities=12% Similarity=0.147 Sum_probs=209.4
Q ss_pred CCCceEEEEEeCCCCEEE-EEeCCcEEEEEccCCceeEEEec--cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 43 DEIELISVSWNQDYGCFA-AGTSCGFRIYNCEPFKETFRRDL--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la-~g~d~~v~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..+.|..+.|+|.+..|. +.+.+.+..|+.+......+..+ +.....+.++.|.+++..+.+.+. |.|.||
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~Iw 272 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILIW 272 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEEE
Confidence 356688999999776555 55599999999987554433222 223478999999999987765443 999999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+..+.+..+... |.+.|.+++...+|.++. .|..|..|| ..-+.++..+.+...-.+..+...... ++ . |...
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~-v-GTtr 348 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-IL-V-GTTR 348 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EE-E-eecc
Confidence 987777766655 999999999999999998 799999999 555555555555444455666665444 33 2 5455
Q ss_pred CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (415)
+.|.-=...........+|......++.+|+..++++++.|+. +++|+ ..+++.... ...++.++.|+|.| .|
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~v 421 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VV 421 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eE
Confidence 5565544455555666789999999999999999999999999 99999 555555544 34578999999999 99
Q ss_pred EEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEE
Q 014977 277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH 356 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (415)
|.|+..|...+.|.++..- .+++
T Consensus 422 a~Gt~~G~w~V~d~e~~~l---------------------------------------------------------v~~~ 444 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTETQDL---------------------------------------------------------VTIH 444 (626)
T ss_pred EEeeccceEEEEeccccee---------------------------------------------------------EEEE
Confidence 9999999999999988542 2555
Q ss_pred eCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 357 ~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
....+.+++.|+|+ ..+++++.|+.||+|.++.
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 56678889999999 7788888899999999987
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.2e-21 Score=177.38 Aligned_cols=275 Identities=11% Similarity=0.143 Sum_probs=220.2
Q ss_pred ccccCCCCCCCCCCCCcccccccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCC
Q 014977 8 SREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG 86 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~ 86 (415)
.|-+.+.|.=+....|+....+..+..+.......|.+.|+.+....+++.|++++ |-+|++|+...........+..|
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 33344445556666776666666666666677889999999999999999999988 99999999987553444556789
Q ss_pred CeeEEEEee-eCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE----------ccCceeEEEEcCCeEEEE---e
Q 014977 87 GFRIVEMLF-RCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA----------FRSDVRSVKLSRDRIVVV---L 150 (415)
Q Consensus 87 ~~~~~~~~~-~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~----------~~~~i~~l~~~~~~~~~~---~ 150 (415)
...|.++++ ..+..++++|+-| +.|.+||+.++. .+..+. +...|++++-++.+..++ .
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred cchheeeeecccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 999999999 7889999999998 999999999873 333221 457899999999998888 5
Q ss_pred CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC
Q 014977 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~ 229 (415)
.+.+++||.++.+.+..+.+|.. .+.++..+++|..+++ ++.||+|++|++.. +++.++..|...++++..+|+-.
T Consensus 192 ek~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred ccceEEeccccccceeeeecccc--ceEEEEEcCCCCeEee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 78899999999999999999998 5555566667777765 77899999999875 67888999999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.+++|+.||. |..=|+++......+.. ...+|..+..+...+-+-+++.|+.|+-|..+-.
T Consensus 269 ~vYsG~rd~~-i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 269 HVYSGGRDGN-IYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred eEEecCCCCc-EEecccCCchhheEeec--CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999999 99999988543333333 4557888888865555677889999999987644
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3e-19 Score=151.30 Aligned_cols=223 Identities=9% Similarity=0.072 Sum_probs=163.6
Q ss_pred EEEEEe-CCcEEEEEccCCc------eeE----EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 58 CFAAGT-SCGFRIYNCEPFK------ETF----RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
.|++|+ ...|.-++++... +.. ...++.|...+.+++. ++.++++|+.| .+|+|||+.+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence 356666 6666666664322 111 1223566666766654 57899999998 9999999999887
Q ss_pred EEEEE-ccCceeEEEEcCCe---EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEE
Q 014977 127 IGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200 (415)
Q Consensus 127 ~~~~~-~~~~i~~l~~~~~~---~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~ 200 (415)
+..+- |.+.|+++.|.+.. .++. .||.|.+|+....+++..++.|...++.++++|+ +++.++. +.|+.++
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsV-g~D~~lr 152 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSV-GGDQVLR 152 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC--CceEEEE-cCCceee
Confidence 77766 99999999999876 3444 7999999999999999999999986555555554 5554444 4799999
Q ss_pred EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977 201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (415)
+|++-.........-......+.|+|.|.+++.+..++ |-+|.+.+......+.. ...+.++.|. ++..|++|.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence 98865433333333333445599999999988888775 89999988777666653 3467778774 567889999
Q ss_pred CCCeEEEEEceecccC
Q 014977 281 DKGTVHIFSLRVRVVG 296 (415)
Q Consensus 281 ~dg~i~vwd~~~~~~~ 296 (415)
+|+.|.+||.+...+.
T Consensus 227 d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPL 242 (362)
T ss_pred CCceEEEeccCCCccc
Confidence 9999999999886543
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=5e-19 Score=161.39 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=171.1
Q ss_pred CceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~ 121 (415)
..+.+++|+|+++.++ ++. ++.|++||..+.+.... +..+ .....+.+++++..+ +++..+ +.|++||+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--LPSG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--ccCC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 3467899999999774 555 89999999987654332 2222 224567788887654 455555 89999999
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (415)
.+++.+..+.....+.+++|+|++.+++ .+ ..+.+||..+++....+.... ....+.+++++..+++++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCC
Confidence 9988888877666678999999998887 22 457788998887765543322 2234556667777766666789
Q ss_pred eEEEEEcCCc-ceEEEecCc-------cceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977 198 QVRIEHFGLN-MIKLINAHD-------SHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (415)
Q Consensus 198 ~v~i~~~~~~-~~~~~~~~~-------~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (415)
.|++|+.... .+..+..+. .....++|+|+|++++++ +.++. |.+||+++++.+..+. +...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence 9999887653 334443221 123468899999986554 45667 9999999988876654 234688999
Q ss_pred eCCCCCEEEEE-eCCCeEEEEEceecccC
Q 014977 269 LSPNVQWLAVA-SDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 269 ~spdg~~l~s~-s~dg~i~vwd~~~~~~~ 296 (415)
|+|+|++|+++ ..+|.|++||+++++..
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999999876 46899999999998864
No 123
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=9.3e-20 Score=154.86 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=172.5
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------------ceeEEEeccCCCeeEEEEeee-------CCeEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------KETFRRDLKSGGFRIVEMLFR-------CNILALV 103 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 103 (415)
..-...+.|+|||..|++-+ |+.+++|++... .+...... ..+..+...+|- |+..+++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceee
Confidence 34567889999999999998 999999998421 11111112 233445554443 5677788
Q ss_pred ecCCCCCCCCCeEEEEECCCCCEEEEEE---cc---CceeEEEEcCCeEEEE--eCCeEEEEEc-CCceeeeEEec----
Q 014977 104 GAGDNSQYPPTKVIIWDDHQSRCIGEFA---FR---SDVRSVKLSRDRIVVV--LEHKIYVYSF-VDLKLLHQIET---- 170 (415)
Q Consensus 104 s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~---~~i~~l~~~~~~~~~~--~d~~i~iwd~-~~~~~~~~~~~---- 170 (415)
+.+.+ .-|++||.-+|+....+. |. ....+++|+|||..++ ....|++||+ +.|+....+..
T Consensus 128 ~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 128 VSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence 87877 999999999999887775 43 3456899999998888 7899999999 55543322211
Q ss_pred cCCCc-ceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 171 LANLR-GLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
..... -+.+++++|....+.+.|+....+-|+.. ...++..+-+|.+.|+.+.|.++|+.|.+|+.....|..||++.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 11111 33456666655533334778888888444 45677888899999999999999999999886433399999985
Q ss_pred -CcEEEEEecCCCcc-cEEE--EEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 249 -GTRLQEVRRGVDRA-EIYS--IALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 249 -~~~~~~~~~~~~~~-~v~~--l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+.++..+.. |.. .-.. +...|++++|++|+.||.|++||++...
T Consensus 283 ~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 283 SRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 456666766 332 2233 4456899999999999999999999843
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=4e-20 Score=163.87 Aligned_cols=235 Identities=14% Similarity=0.181 Sum_probs=181.4
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+|...|.+++.++||++||+|. |..|.||+.++.+.+.. +.+|...|.+++|.....-+.+++.| ..|++|
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~D-----rsvkvw 271 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASAD-----RSVKVW 271 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecC-----CceEEE
Confidence 48999999999999999999999 99999999998776544 56899999999999888888888887 999999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
++.....+.++- |...|.+|....-++.+. .|.++++|++..... ..+.++...+.+++|--+ . .++ +|+.
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~--~-Hfv-sGSd 346 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND--E-HFV-SGSD 346 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc--c-cee-eccC
Confidence 988877666654 999999999887777766 799999999954333 345666654555555433 3 344 5999
Q ss_pred cCeEEEEEcCCc-ceEEEe-cC-----------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecC
Q 014977 196 RGQVRIEHFGLN-MIKLIN-AH-----------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRG 258 (415)
Q Consensus 196 dg~v~i~~~~~~-~~~~~~-~~-----------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~ 258 (415)
+|.|.+|....+ ++.+.. +| ..+|++++..|...++|+|+.+|. |++|-+.++ .++..+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence 999999987653 333322 22 238999999999999999999999 999999887 3444444
Q ss_pred CCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEce
Q 014977 259 VDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLR 291 (415)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~ 291 (415)
..+-|++|+|+++|++|++| +....+--|-..
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 56789999999999976665 334444444433
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=165.70 Aligned_cols=218 Identities=12% Similarity=0.189 Sum_probs=177.7
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
-.++|.+++-+|+|.+|+.|+ .+.+++|.+.++..+.. +..|-..+.++.|+.|+..+++++.| |.|.+|.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~vW~l 152 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSHIITGSKD-----GAVLVWLL 152 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcEEEecCCC-----ccEEEEEE
Confidence 367799999999999999998 99999999999776554 34888899999999999999999998 99999985
Q ss_pred C---------CCCEEEEEE-ccCceeEEEEcCCe---EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 122 H---------QSRCIGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 122 ~---------~~~~~~~~~-~~~~i~~l~~~~~~---~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
. +-+++..+. |.-+|+++.+.+.+ +++. .|.++++||+..+..+..+.... .+.++..+|..
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae 229 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAE 229 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccc
Confidence 2 235566666 89999999987653 3332 79999999999999887775433 55666666666
Q ss_pred eEEEEeCCccCeEEEEEcCC-----------------cceEEEecCcc--ceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977 187 SVLACPGLQRGQVRIEHFGL-----------------NMIKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~-----------------~~~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
..+. .|..+|.|.+.+... ..+..+.+|.+ .|+|++++-||.+|++|+.||. |+|||+.
T Consensus 230 ~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~ 307 (476)
T KOG0646|consen 230 RVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIY 307 (476)
T ss_pred cEEE-ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecc
Confidence 6654 488999998843321 34566778987 9999999999999999999999 9999999
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 248 DGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
+.++++++.. ..++|+.+.+.|-.+
T Consensus 308 S~Q~iRtl~~--~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 308 SKQCIRTLQT--SKGPVTNLQINPLER 332 (476)
T ss_pred hHHHHHHHhh--hccccceeEeecccc
Confidence 9999988875 567899999976443
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-19 Score=152.77 Aligned_cols=202 Identities=16% Similarity=0.255 Sum_probs=157.9
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-----CEEEEEEccCceeEEEEcCCeEEEE----eCCe
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVV----LEHK 153 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~ 153 (415)
+++|...+.+++|+.||..|+++..| +.|++|+++.- ++++.--.-+..+.+.|.||.+-++ ...+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 46899999999999999999999998 99999998753 2222222334678899999987666 6789
Q ss_pred EEEEEcCC---ceeeeEE---e---c-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEE
Q 014977 154 IYVYSFVD---LKLLHQI---E---T-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT 223 (415)
Q Consensus 154 i~iwd~~~---~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~ 223 (415)
+++|.+.. |.....+ . . ....+.++.+-....+.+|++ ++.|..|.+|+..++.+..+......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence 99998732 2222111 0 0 112234555666667777765 7789999999999999999988888888999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEECC---CC-----cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 224 LTLDGLLLATASTRGTLIRIFNTV---DG-----TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~---~~-----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.||+|++|++++..-. |+||.+- .| ..+..+++ |.+.|..++|+++.+.+++.+.||+++|||++-.
T Consensus 236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 9999999999998888 9999863 33 24456677 8999999999999999999999999999998754
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5e-20 Score=163.58 Aligned_cols=235 Identities=10% Similarity=0.108 Sum_probs=188.7
Q ss_pred CEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-cc
Q 014977 57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR 133 (415)
Q Consensus 57 ~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~ 133 (415)
.+++++. ...+.+|.+......... + --...+.++.-+++|.+++.+... +.|++|.+.+|..+..+. |-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~-v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-I-VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-c-ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhhc
Confidence 4677776 567899998764433321 1 345567888899999999998666 999999999999988887 99
Q ss_pred CceeEEEEcCCeEEEE---eCCeEEEEEcC---------CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977 134 SDVRSVKLSRDRIVVV---LEHKIYVYSFV---------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 134 ~~i~~l~~~~~~~~~~---~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
..|+++.|+.|+.+++ .||.|.+|.+. +-++++.+..|.-++.-+.+.+.+-...+++ .+.|.++++
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~ 202 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL 202 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence 9999999999999998 79999999872 3466777888887777666776655556655 679999999
Q ss_pred EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----------------CcEEEEEecCCCcccEE
Q 014977 202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~ 265 (415)
|+.....+..--.....+.+++.+|-++.+++|+.+|. |.+.++.. +..+..+.++.....|+
T Consensus 203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 99988766555567889999999999999999999999 98877643 23455666743334999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCC
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~ 300 (415)
+++.+-||.+|++|+.||.|.|||+.+.++.+++.
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999999999999999999999999998876554
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1.3e-18 Score=155.87 Aligned_cols=228 Identities=15% Similarity=0.197 Sum_probs=172.0
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
+..|.|++|.++|..+..-++|.|.||+..+...... .+ .|...+.+++...++.++. |+.| ..|..||- .
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~-~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~-~ 316 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ-VH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDD-N 316 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE-ee-ecCCceEEEEEecCccEee-cCcc-----ceEEeccc-c
Confidence 4789999999999865544499999999976444333 23 8889999999999999887 8887 99999982 1
Q ss_pred CCEEE------------------------------------------EEEccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977 124 SRCIG------------------------------------------EFAFRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (415)
Q Consensus 124 ~~~~~------------------------------------------~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd 158 (415)
-+.++ .+.|......++.+|+...++ .|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 11111 111445667777888766666 799999999
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG 238 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 238 (415)
..+++....... ...+..++|.+ .+|. |...|...+.+...+.+..+.....++++++|+|+|.+||.|+.|+
T Consensus 397 --~~k~~wt~~~~d---~~~~~~fhpsg-~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 397 --DHKLEWTKIIED---PAECADFHPSG-VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred --CCceeEEEEecC---ceeEeeccCcc-eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 445554443322 34566666677 5655 8888888886666666666666689999999999999999999999
Q ss_pred cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977 239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (415)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 288 (415)
. |+||-+..........+..+.++|+.+.||+|+++|.+.+.|-.|..|
T Consensus 470 ~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 470 H-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred e-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 9 999998765444333333345799999999999999999999999999
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=3.1e-19 Score=165.54 Aligned_cols=291 Identities=15% Similarity=0.206 Sum_probs=206.1
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
....||++.|+++.|+|.+..|.+++ |.++.+|.-+...-+..... .+...+.....|++++..+++.+..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--- 337 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--- 337 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence 44679999999999999998888888 99999999876432332221 2234457788999999888888877
Q ss_pred CCCeEEEEECCCC-CEEEE--EE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEE---eccCCCcceEEE
Q 014977 112 PPTKVIIWDDHQS-RCIGE--FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQI---ETLANLRGLCCL 180 (415)
Q Consensus 112 ~~~~i~vwd~~~~-~~~~~--~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~ 180 (415)
|..++|..+.. ..... +. |-..|++++|+|.|.+++ .|.+-++|---..+. -+.+ +.|... ..++
T Consensus 338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD--l~c~ 413 (764)
T KOG1063|consen 338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD--LTCL 413 (764)
T ss_pred --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc--ceee
Confidence 99999983332 22222 22 889999999999999888 688888876431111 1112 223332 2333
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCC------------------------------------------------------
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGL------------------------------------------------------ 206 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~------------------------------------------------------ 206 (415)
++-+....++ +|.+...++++....
T Consensus 414 ~~vn~~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 414 SFVNEDLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred ehccCCceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 3332111222 344444444443211
Q ss_pred -----------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCC
Q 014977 207 -----------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 207 -----------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~ 259 (415)
..++.+.+|...|++++.+|+|+++|+++.... .|++|+..+....+.+..
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-- 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-- 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence 123445689999999999999999999876432 499999999888888888
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
|.-.|+.|+|||||++|++++.|.++.+|........+
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e------------------------------------------ 608 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE------------------------------------------ 608 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh------------------------------------------
Confidence 88899999999999999999999999999986554321
Q ss_pred cccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecC
Q 014977 340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~ 390 (415)
..|+..+.+......|.|+|+ ..+++++.|-+|.+|.....
T Consensus 609 ----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 609 ----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ----------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 113445555556677999998 44778888999999988764
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=172.60 Aligned_cols=241 Identities=14% Similarity=0.218 Sum_probs=189.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecCCCCCCCCCe
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~~~~ 115 (415)
.-+....|.+++.+|+|++||+|. -|.++||++...+..... ..|...|.++.|+. ...+|++++.| ..
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~--eAHesEilcLeyS~p~~~~kLLASasrd-----Rl 527 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM--EAHESEILCLEYSFPVLTNKLLASASRD-----RL 527 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe--ecccceeEEEeecCchhhhHhhhhccCC-----ce
Confidence 345567799999999999999999 999999999876655543 47888899988875 35789999998 99
Q ss_pred EEEEECCCC-CEEEEEE-ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCC-ceeeeEEeccC---CCcceEEEecCC
Q 014977 116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVD-LKLLHQIETLA---NLRGLCCLSHHS 184 (415)
Q Consensus 116 i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~-~~~~~~~~~~~---~~~~~~~~~~~~ 184 (415)
|.|+|+... ..++++. |...|+++.|.-.| ..++ .|..|. |+... ......+..+. ...++..+..+|
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC
Confidence 999998665 4556666 89999999998765 3333 455554 33322 11111222221 122567788888
Q ss_pred CceEEEEeCCccCeEEEEEc-CCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977 185 STSVLACPGLQRGQVRIEHF-GLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (415)
..+++++ ++.|..|+|++. .++..+.|++ |++....+...|.|.|||+...|.+ +.++|..+|+++.+..+ |
T Consensus 607 ~~k~v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--H 682 (1080)
T KOG1408|consen 607 TSKLVVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--H 682 (1080)
T ss_pred CcceEEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--c
Confidence 8888876 569999999665 4566777764 6677888999999999999999999 99999999999999988 8
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECch
Confidence 88999999999999999999999999999854
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=9.4e-20 Score=168.99 Aligned_cols=234 Identities=13% Similarity=0.213 Sum_probs=191.3
Q ss_pred CCCCCCceEE-EEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELIS-VSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~-l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
..+|.+.|.. ++|-+ ++-+|++|+ |..+.+|........+. +.+|...|+++.-..++. +++++-| .++
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~~-~iSgSWD-----~Ta 124 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDGT-LISGSWD-----STA 124 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh--hhccccceeeeecCCcCc-eEecccc-----cce
Confidence 4557777776 77775 555688888 99999999987766554 558999999988777777 8899988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
++|- .+++...+. |...|.++..-|++.++. .|.+|++|. .++.++++.+|...+.. +..-+++.++ ++
T Consensus 125 kvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRg--L~vl~~~~fl--Sc 196 (745)
T KOG0301|consen 125 KVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRG--LAVLDDSHFL--SC 196 (745)
T ss_pred EEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheee--eEEecCCCeE--ee
Confidence 9997 455555566 999999999999997776 799999998 47889999999985544 4444444454 36
Q ss_pred CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
+.||.|++|+.++..+..+.+|...+++++..+++..++++++|++ ++||+.. ++.+.+.- ....|+++.+-++|
T Consensus 197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG 271 (745)
T ss_pred cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence 6999999999999999999999999999998888889999999999 9999864 77777773 23389999998888
Q ss_pred CEEEEEeCCCeEEEEEceeccc
Q 014977 274 QWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
. |++|+.||.|+||-.+....
T Consensus 272 D-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 272 D-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred C-EEEeccCceEEEEEeccccc
Confidence 7 66888999999999886554
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.1e-18 Score=159.75 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=115.1
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.....+.|++++.+|.+..+++|+ ||.+..++..+....+...|.....++.++.|++++..+++|+.| |.|++
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D-----g~Iri 180 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID-----GVIRI 180 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-----ceEEE
Confidence 345678999999999999999998 887788888888888888887778999999999999999999998 99999
Q ss_pred EECCCCCEEEEEE---------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 119 WDDHQSRCIGEFA---------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 119 wd~~~~~~~~~~~---------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
||..++..+.... ...-|.++.+-.++.++. ..|+|.+||...+.+++.+..|.. .+.+++.++++.
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCC
Confidence 9999998777332 123577888888998888 679999999988888777776665 333444433333
Q ss_pred EEEE
Q 014977 188 VLAC 191 (415)
Q Consensus 188 ~l~~ 191 (415)
.+.+
T Consensus 259 ~vfs 262 (691)
T KOG2048|consen 259 RVFS 262 (691)
T ss_pred eEEE
Confidence 3433
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=165.18 Aligned_cols=246 Identities=17% Similarity=0.132 Sum_probs=183.3
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~ 115 (415)
....++...|+++.=+|--..+|+|. +|.|.|+++...+.+.... .....|.++.|..||. .++++... |.
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~-----G~ 268 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSN-----GD 268 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCC-----ce
Confidence 34567789999999999999999999 9999999999877665533 3358899999998875 45555554 88
Q ss_pred EEEEECCCCCEEEEEE--ccCc----------------------------------------------------------
Q 014977 116 VIIWDDHQSRCIGEFA--FRSD---------------------------------------------------------- 135 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~--~~~~---------------------------------------------------------- 135 (415)
+.+||++..+.+..+. |.+.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999987655443332 2111
Q ss_pred --------------------------------------------------------------------------------
Q 014977 136 -------------------------------------------------------------------------------- 135 (415)
Q Consensus 136 -------------------------------------------------------------------------------- 135 (415)
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence
Q ss_pred ----------------------eeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCce
Q 014977 136 ----------------------VRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 136 ----------------------i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 187 (415)
+++++.++-|++.+ ..|.|.+|++++|-....+ ..|.. .+..++.+.-++
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~~n~ 506 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDGTNR 506 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecCCCc
Confidence 22222222223222 3555666666555555554 23333 556677777777
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
.+++ ++.+|.+++|+...+....--.-...+..+..+....+++.+..|-. |+++|+.+.+.++.|.+ |.+.|+++
T Consensus 507 ~~vs-a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~ 582 (910)
T KOG1539|consen 507 LLVS-AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDM 582 (910)
T ss_pred eEEE-ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeee
Confidence 7776 56899999999988775444445667788888888888999999988 99999999999999999 88999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|||||+||++++.|++|++||+.++...
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 99999999999999999999999998743
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-21 Score=181.49 Aligned_cols=218 Identities=17% Similarity=0.284 Sum_probs=183.6
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD 135 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~ 135 (415)
+++.+. .-.+++|+.... ..|...+.++..-.....+++|+.| ..+-+|.+..-..+..+. |..+
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hesp 72 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESP 72 (825)
T ss_pred ccceeeeeeccccccchhh--------hhhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCc
Confidence 344444 666778876532 1344444444445667888999887 888899987777776766 9999
Q ss_pred eeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEE
Q 014977 136 VRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKL 211 (415)
Q Consensus 136 i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~ 211 (415)
|.++.|+++..+++ .+|+|++||++..+.++++.+|.. .++.+.++|-+.+.| .|+.|+.+++|+.+ ..+...
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceEEec-cccccccceehhhhccCceee
Confidence 99999999998888 799999999999999999998887 455566777777775 59999999999987 688999
Q ss_pred EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|.. |.+.+..+.|+|..-+++.|+.|+++++||++
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccc
Confidence 9999999999999999999999999999 99999999999999998 88899999999999999999999999999999
Q ss_pred ecc
Q 014977 292 VRV 294 (415)
Q Consensus 292 ~~~ 294 (415)
+-+
T Consensus 227 tfe 229 (825)
T KOG0267|consen 227 TFE 229 (825)
T ss_pred eeE
Confidence 654
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.5e-20 Score=150.07 Aligned_cols=249 Identities=13% Similarity=0.159 Sum_probs=187.6
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcC--CeEEEE---eCCeEE
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIY 155 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i~ 155 (415)
.|...|.+...+--+..|++++.| +.|+|+.++.+. .+.++. |.++|..++|.. -|.+++ .||+|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 455555555556668889999988 999999987653 556666 999999999976 688888 799999
Q ss_pred EEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCC--
Q 014977 156 VYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD-- 227 (415)
Q Consensus 156 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~-- 227 (415)
||.-++++ .......|...+..++++|+.-+..|++ ++.||.|.|...+.. ..+....|.-.+++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 99987764 3344567788888899999988888887 678999999443332 34456789999999999985
Q ss_pred -C-----------CEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCeEEEEE
Q 014977 228 -G-----------LLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGTVHIFS 289 (415)
Q Consensus 228 -g-----------~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~i~vwd 289 (415)
| +.|++|+.|.. |+||+..+++ .-++|.+ |...|+.++|.|.- .+||+++.||++.||-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 56999999999 9999988763 3344666 88999999999964 4799999999999998
Q ss_pred ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS 369 (415)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (415)
.+ .+... +. ...|-+ -......+.|+.
T Consensus 240 ~~-~e~e~----------------------------------wk-----~tll~~-------------f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 240 KD-EEYEP----------------------------------WK-----KTLLEE-------------FPDVVWRVSWSL 266 (299)
T ss_pred ec-CccCc----------------------------------cc-----cccccc-------------CCcceEEEEEec
Confidence 87 22110 00 001111 124567788988
Q ss_pred C-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 014977 370 Q-NTVVIVSMDGSFYRCSFDPVHGGEMLQ 397 (415)
Q Consensus 370 ~-~~i~~~~~dg~~~~~~~~~~~~~~~~~ 397 (415)
. +.|.+++.|.+|.+|.-+. .|+...
T Consensus 267 sGn~LaVs~GdNkvtlwke~~--~Gkw~~ 293 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV--DGKWEE 293 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC--CCcEEE
Confidence 7 8888888899999998766 344443
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.2e-21 Score=177.46 Aligned_cols=236 Identities=11% Similarity=0.142 Sum_probs=201.6
Q ss_pred CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
...+....|...|.++..-..++.+++|+ +..+.+|.+.....+.. +..|...|-++.|+....+++.|..+
T Consensus 19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~~E~Llaagsas----- 91 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDTSERLLAAGSAS----- 91 (825)
T ss_pred ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCcchhhhcccccC-----
Confidence 34456778999999999978889999999 88888999875444443 45889999999999999999999988
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
|+|++||+++++.++++. |...+..+.|+|-+.+.+ .|..+++||++...+.+.+.+|...+ -.+.+.|+|.++
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv--~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV--DVLRLSPDGRWV 169 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee--EEEeecCCCcee
Confidence 999999999999999887 899999999999999997 79999999999888999998877644 445556677888
Q ss_pred EEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977 190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (415)
+. |.+|.+++||+.. ++....|..|...+.++.|+|..-++++|+.|++ +++||+++.+.+..... ....|.+++
T Consensus 170 ~~-g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~ 245 (825)
T KOG0267|consen 170 AS-GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLA 245 (825)
T ss_pred ec-cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeee
Confidence 76 6689999998875 5667788999999999999999999999999999 99999998888877666 567899999
Q ss_pred eCCCCCEEEEEeCCC
Q 014977 269 LSPNVQWLAVASDKG 283 (415)
Q Consensus 269 ~spdg~~l~s~s~dg 283 (415)
|+|+++.+++|-.+.
T Consensus 246 fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNPDGKIVLSGEQIS 260 (825)
T ss_pred ecCCceeeecCchhh
Confidence 999999888876554
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-19 Score=158.56 Aligned_cols=238 Identities=14% Similarity=0.122 Sum_probs=181.8
Q ss_pred eEEEEEeCCCCEEEEEe---CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~---d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
+.++.|+.... |++++ |..+++|.-... ..+..... .......|+.......++++++.. +.|+|||++
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~-----~~Vkiwdl~ 109 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQS-----GCVKIWDLR 109 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcC-----ceeeehhhH
Confidence 99999998765 44443 888999976532 11111111 122233344444455888899887 999999999
Q ss_pred CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 123 ~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
...+.+.++ |...|+++.++-...+++ ..|.|.|..+.++.....|..... ..+.-+.+++..++++.+.+.+|.
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-qsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-QSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-CeEEEeecccccceeeEeeccCCe
Confidence 777777777 999999999999888888 678999999999888777765433 123345555555666667889999
Q ss_pred EEEEEcCCcc--eEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977 199 VRIEHFGLNM--IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (415)
Q Consensus 199 v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (415)
|.+|+.++.. ......|..+...|+|+|.. .+|++.+.|.. |.+||+...+....+. ...+...++|+++|.+
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSECGTY 264 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecCCceE
Confidence 9999998743 33457899999999999955 57889999999 9999998877776666 4558999999999999
Q ss_pred EEEEeCCCeEEEEEceecccC
Q 014977 276 LAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|+.|+..|.|..||++..+..
T Consensus 265 L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred EEeecCCceEEEEecccCCCC
Confidence 999999999999999987744
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=8.8e-19 Score=155.34 Aligned_cols=202 Identities=11% Similarity=0.128 Sum_probs=150.5
Q ss_pred CCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCCCEE----------EEEE-ccCceeEEEEcCC--eEEEE-
Q 014977 85 SGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCI----------GEFA-FRSDVRSVKLSRD--RIVVV- 149 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~~~~----------~~~~-~~~~i~~l~~~~~--~~~~~- 149 (415)
.|...|..+.+.|+. .++++.... +.|.|||..+.... ..+. |...-.++.|++. +.++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 455566667777755 455555555 99999996543111 1233 7777788999875 45555
Q ss_pred -eCCeEEEEEcCCce-------eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccc
Q 014977 150 -LEHKIYVYSFVDLK-------LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSH 218 (415)
Q Consensus 150 -~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~ 218 (415)
.|++|.+||+.... ....+.+|...+.-++|++.... +++ +.+.|+.+.||+.+. +......+|.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~-sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFG-SVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hhe-eecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 79999999995432 34456778876666666665443 333 456899999988773 456667899999
Q ss_pred eEEEEeCCC-CCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977 219 IACFTLTLD-GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 219 i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.+++|+|- +.+||+|+.|++ |++||+++. +++..+.+ |...|..+.|+|. ...||+++.|+.+.|||+..-..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 999999994 567899999999 999999876 46778888 8899999999995 45788999999999999987554
Q ss_pred C
Q 014977 296 G 296 (415)
Q Consensus 296 ~ 296 (415)
.
T Consensus 352 e 352 (422)
T KOG0264|consen 352 E 352 (422)
T ss_pred c
Confidence 3
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=7e-19 Score=152.39 Aligned_cols=219 Identities=15% Similarity=0.130 Sum_probs=158.6
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEE--e-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAG--T-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g--~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.++.+.-++-++-.+++ + .|.|+||++...-..+. ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~----~~~---------------------------- 193 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS----EPG---------------------------- 193 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc----Ccc----------------------------
Confidence 456788888888888766433333 3 88999999875221111 000
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcC--CeEEEE--eCCeEEEEEcCCceee---eEEeccCCCcceEEEecCCCce
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~--~~~~~~--~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+.+-+ ...+++.++. |...=++|+|+| .|.++. --+.|++|...++.-. ..+.+|...+.-+++++..+
T Consensus 194 ~~~~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-- 270 (440)
T KOG0302|consen 194 LEVKD-SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-- 270 (440)
T ss_pred ccccc-cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--
Confidence 00011 3445666666 778888999998 344444 3567999998776432 23455666555555555544
Q ss_pred EEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC---CcEEEEEecCCCc
Q 014977 188 VLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD---GTRLQEVRRGVDR 261 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~~ 261 (415)
-++++|+.||+|+||+.+.. .....++|.+.|+.|.|+.+-.+||+|+.||. ++|||++. ++++..|+. |.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk 347 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HK 347 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--cc
Confidence 35556889999999998875 34445899999999999998889999999999 99999974 568889988 89
Q ss_pred ccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977 262 AEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 262 ~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.+|+++.|+|. ...|++++.|.+|.|||+.....
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999984 45788889999999999987654
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.9e-19 Score=160.02 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=185.2
Q ss_pred cccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe--EEEEecC
Q 014977 30 ASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAG 106 (415)
Q Consensus 30 ~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~ 106 (415)
.+|+........+|++.|.+|+..|.|.+||+|+ ||+|+||.+.++.++....+ . ..|.+++|+|.. .+|+.+-
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d--~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-D--SEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-c--ceeEEEEecCCCCceeEEEEe
Confidence 4444445556789999999999999999999999 99999999999888777665 2 256667777642 3333222
Q ss_pred CC---------------------------CCCCCCeEEEEECCC---C--CEEEEEEccCceeEEEEcCCeEEEE-----
Q 014977 107 DN---------------------------SQYPPTKVIIWDDHQ---S--RCIGEFAFRSDVRSVKLSRDRIVVV----- 149 (415)
Q Consensus 107 ~d---------------------------~~~~~~~i~vwd~~~---~--~~~~~~~~~~~i~~l~~~~~~~~~~----- 149 (415)
.. ..+.+..+..|.-.. . ..-..+.|...|..+.|+..|.+++
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 11 112345666776331 1 1223456899999999999999998
Q ss_pred -eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC
Q 014977 150 -LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD 227 (415)
Q Consensus 150 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~ 227 (415)
....|.|+++...+....|..... .+.+..++|...+|+++ ....|+|+++.. ..++.+......|..++.+|.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred CCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 346799999976665555543333 34455555555555543 367899976654 456666777788999999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 228 GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 228 g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
|.-|+.++.|+. +..||+.-. ++.+++.- |...+++++|++.-.++++|+.||++.||.-
T Consensus 619 GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 619 GDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred CCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999 999999755 56667776 8889999999999999999999999999863
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=154.59 Aligned_cols=249 Identities=10% Similarity=0.071 Sum_probs=180.1
Q ss_pred ccCCCCCCceEEEEEeCCC--CEEEEEe-CCcEEEEEccCCcee--EEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY 111 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g--~~la~g~-d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~ 111 (415)
+...-+.++|++++|+|.. +++|+|. .|.|-+||+.+.++. -...+..|...|.++.|+|. ...+.+.+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD--- 256 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD--- 256 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC---
Confidence 3345688999999999965 5788888 999999999532221 11234588889999999984 4556666766
Q ss_pred CCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEEeccCCCcceEEEecCC
Q 014977 112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (415)
|+|++-|++++.....+. ....+.++.|+.+...++ .=|...+||+++.+. ...+..|.. .+..++.+|
T Consensus 257 --GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 257 --GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred --ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 999999988765433332 344566777876655444 235789999987654 555666766 455556666
Q ss_pred CceEEEEeCCccCeEEEEEcCC---c--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC----CCcEEEEE
Q 014977 185 STSVLACPGLQRGQVRIEHFGL---N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV----DGTRLQEV 255 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~~~---~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~----~~~~~~~~ 255 (415)
...+++++++.|++++||+.+. + ++.....|...|.+..|||.|-.|++.+.|.. |+|||.. .-.++.++
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence 6666666788999999999764 2 23455689999999999998888999999999 9999983 33445555
Q ss_pred ecCCCcc---cEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 256 RRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 256 ~~~~~~~---~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.-....+ ......|.|+..++++|-.-..|-|||-..++
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 4211111 34456899999999999999999999977666
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.9e-18 Score=163.96 Aligned_cols=241 Identities=14% Similarity=0.141 Sum_probs=183.4
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCC
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD 161 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~ 161 (415)
.|..+...++|.+++.++++++.| +.|++|+.... +.-..+. +...|.+++......... .+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 566778899999999999999988 99999996555 3333444 777888888776644444 799999999987
Q ss_pred ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240 (415)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (415)
++.-..+....-++.. +.++.+|.++|+ |+.|-.|++ ...+....+.+++|.++|.++.|+|++.+||+.+-||.
T Consensus 86 ~~~~~iL~Rftlp~r~--~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~- 161 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRD--LAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK- 161 (933)
T ss_pred CCccceeeeeeccceE--EEEecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence 7654444333333344 445556677876 778999998 66677888999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCC------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccccccc
Q 014977 241 IRIFNTVDGTRLQEVRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLN 314 (415)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (415)
|+|||+.++.+...+.+-. ....+..++|+|+|..++....|+.|++|+....+...++...
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------ 229 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------ 229 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------
Confidence 9999999988776665311 1335678999999888999999999999999888753211111
Q ss_pred CCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
......++++|+|+ ..|++++-||.|.||+++
T Consensus 230 ------------------------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 230 ------------------------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ------------------------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 01123567999999 556666669999999998
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=6.6e-18 Score=141.96 Aligned_cols=204 Identities=12% Similarity=0.171 Sum_probs=153.2
Q ss_pred CCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCC----------EEEEE--E----ccCceeEEEEcCC--eE
Q 014977 86 GGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSR----------CIGEF--A----FRSDVRSVKLSRD--RI 146 (415)
Q Consensus 86 ~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~----------~~~~~--~----~~~~i~~l~~~~~--~~ 146 (415)
|...+..+...+ .+.++++|+.| |.|.|||+++.. .+..+ . |+-.|.++.|-|- |.
T Consensus 42 HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred CCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 344455555444 57889999988 999999987532 11111 1 6678999999884 44
Q ss_pred EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEE
Q 014977 147 VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFT 223 (415)
Q Consensus 147 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~ 223 (415)
+.. .|.+++|||..+.+....|+.... +...++++-.....|+++|..+-.|++ +...+.....+.+|...|.++.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 444 699999999999888777765432 344455554443345556888999999 6677888999999999999999
Q ss_pred eCCCCCE-EEEEeCCCcEEEEEECCCC-cEEEEEe------------cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 224 LTLDGLL-LATASTRGTLIRIFNTVDG-TRLQEVR------------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 224 ~sp~g~~-l~s~s~dg~~I~vwd~~~~-~~~~~~~------------~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
|+|...+ |++|+.||. |++||++.- .+...+. ...|.+.|.+++|+.|+.++++.+.|..+++|+
T Consensus 196 Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9998875 789999999 999999754 2332322 233667899999999999999999999999999
Q ss_pred ceecccC
Q 014977 290 LRVRVVG 296 (415)
Q Consensus 290 ~~~~~~~ 296 (415)
..+|+..
T Consensus 275 ~~~G~nt 281 (397)
T KOG4283|consen 275 MESGRNT 281 (397)
T ss_pred cccCccc
Confidence 9998754
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=3.1e-18 Score=158.32 Aligned_cols=270 Identities=13% Similarity=0.137 Sum_probs=207.6
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
.|+.++|-|||..|+.+.+..+.|||.+.+.... .+++|...+.+++|+.+|..+++|+.| ..|.+|. ..-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llq--tLKgHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccc--ccccccceEEEEEEccCCceeccCCCc-----eeEEEec-cccc
Confidence 8999999999999999999999999998766544 466999999999999999999999998 9999998 4445
Q ss_pred EEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977 126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (415)
Q Consensus 126 ~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~ 203 (415)
-+..+.|...|.+|.|+|-...++ .=...-+|...+.... .+.....+++.+|..+|.+++. |-.+|+|.|-+
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylal-G~~nGTIsiRN 160 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLAL-GMFNGTISIRN 160 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEE-eccCceEEeec
Confidence 556677999999999999877776 4445567876543222 2333447788899999999987 88999999977
Q ss_pred cCCcceEEEe---cCccceEEEEeCCCC-----CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977 204 FGLNMIKLIN---AHDSHIACFTLTLDG-----LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (415)
Q Consensus 204 ~~~~~~~~~~---~~~~~i~~l~~sp~g-----~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (415)
..++....+. +...+|.+++|+|.. ..+++.....+ +.+|.+ +|+.+..-+. -.-...++.+-++|.+
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCcE
Confidence 7776655554 367899999999953 47888888888 888887 6666654333 2234678999999999
Q ss_pred EEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEE
Q 014977 276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (415)
+..|+.|+.+++|--+.-.-+ . +..
T Consensus 237 ~LiGGsdk~L~~fTR~GvrLG-------------------------------------------T-vg~----------- 261 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDGVRLG-------------------------------------------T-VGE----------- 261 (1081)
T ss_pred EEEccCCCceEEEeecCeEEe-------------------------------------------e-ccc-----------
Confidence 999999999999864322211 0 000
Q ss_pred EeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.+.-...++..|+ ..++++|.||++--|++-.
T Consensus 262 --~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 262 --QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred --cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 0123455778888 7889999999999998764
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=152.93 Aligned_cols=233 Identities=14% Similarity=0.149 Sum_probs=165.6
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEE-Ee------------------ccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFR-RD------------------LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPT 114 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~ 114 (415)
|.++|+|+ +..|.|||++-...++. .. ..+|...+..+.|+.. ..+|++|+.| .
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD-----~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD-----K 266 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC-----c
Confidence 57999999 99999999962111100 00 1245556667777765 4688999988 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
+|++||+.++++...+. |...|.++.|+|....++ .|+++.+.|.+........-.....+..+.|.+... ..
T Consensus 267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~ 344 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NS 344 (463)
T ss_pred eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--ee
Confidence 99999999999999999 899999999998754444 699999999985322211111122234444554443 44
Q ss_pred EEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 190 ACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
+.++..||+|+-.+.+ ++++.++++|..+|.+|++++.- .+|++++.|+. |++|++..............-+...|
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccceee
Confidence 4457799999996654 37899999999999999998754 47899999999 99999865443222111101234667
Q ss_pred EEeCCCCC-EEEEEeCCCeEEEEEceecccC
Q 014977 267 IALSPNVQ-WLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 267 l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+++.|+-. +|+.|+..+.++|||+.+....
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhH
Confidence 78888654 5677888888999999887643
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=149.26 Aligned_cols=205 Identities=15% Similarity=0.182 Sum_probs=156.0
Q ss_pred ccCceeEEEEcCCe--EEEE---eCCeEEEEEcC----------------CceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 132 FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFV----------------DLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 132 ~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
|.+.++.+...+-+ .+.+ ..|.|+||++. ..+.+.++.+|......++|++...|.++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll- 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL- 228 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc-
Confidence 56667777666543 2333 58999999983 23456777777765566677765555444
Q ss_pred EeCCccCeEEEEEcCCcc----eEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 191 CPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
+|..-+.|++|...... ...+.+|...|-.++|||.. ..|++|+-||+ |+|||++.+.....+....|.+.|+
T Consensus 229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence 47677788888765422 23466799999999999965 48999999999 9999999984322222233888999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcc
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY 345 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (415)
-|.|+.+..+||+|++||+++|||++.-+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~------------------------------------------------- 337 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG------------------------------------------------- 337 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCC-------------------------------------------------
Confidence 9999998889999999999999999987632
Q ss_pred cccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEecCCC
Q 014977 346 FSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPVHG 392 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~~~~ 392 (415)
..+++|+....+.+.+.|+|. ..|+++|.|..+-+|.+..+..
T Consensus 338 ----~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 338 ----QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ----CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 235788888889999999997 7888888999999999986533
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-19 Score=175.00 Aligned_cols=244 Identities=15% Similarity=0.231 Sum_probs=189.9
Q ss_pred CCCceEEEEEeCCCCE----EEEEe-CCcEEEEEccCC----ceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCC
Q 014977 43 DEIELISVSWNQDYGC----FAAGT-SCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYP 112 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~----la~g~-d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~ 112 (415)
...+.+.++|.+.|.. ||.|. ||.|.+|+.... ..........|...|..+.|++.. .++++|+++
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~---- 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD---- 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC----
Confidence 3567899999998876 66666 999999998752 112222345788899999999965 599999988
Q ss_pred CCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 113 PTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
|.|.|||+.+-+.-.... ....|.+++|+..-..++ .+|.+.|||++..+.+-.+..+.....+..+.|+|+
T Consensus 139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 999999988754433332 567899999998766555 578999999998887777766554444445555554
Q ss_pred --ceEEEEeCCccC--eEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 186 --TSVLACPGLQRG--QVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 186 --~~~l~~~g~~dg--~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
.+++++++ +|+ .|.+|+.+. .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+..
T Consensus 218 ~aTql~~As~-dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~- 294 (1049)
T KOG0307|consen 218 HATQLLVASG-DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA- 294 (1049)
T ss_pred CceeeeeecC-CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence 44554433 333 466699765 5678889999999999999966 89999999999 99999999999999987
Q ss_pred CCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceeccc
Q 014977 259 VDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 259 ~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~ 295 (415)
....+..+.|+|... .+++++.||.|.||.+.....
T Consensus 295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 567899999999665 888999999999999988763
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=154.07 Aligned_cols=281 Identities=14% Similarity=0.118 Sum_probs=191.5
Q ss_pred EEEEEeC---CCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 48 ISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 48 ~~l~~sp---~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+..|++ ....||.+. +|.|.++|....... .......|...+.++.|.+....|++++.| .++++|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD-----sT~r~W 127 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD-----STIRPW 127 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC-----ceeeee
Confidence 3456664 234677888 999999998643221 112234788999999999977888888887 999999
Q ss_pred ECCCCCEEEE---EEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCce--------------------eee------
Q 014977 120 DDHQSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--------------------LLH------ 166 (415)
Q Consensus 120 d~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~--------------------~~~------ 166 (415)
|+++++++.. +.|...|.+++|.+....++ .||.|.|||++... ..+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999988776 34999999999999877666 79999999984321 000
Q ss_pred -EEeccCCCc-ceEEEecCCCceEEEEeCCccCeEEEEEcCCcc---------eEEEecC---ccceEEEEeCCCCCEEE
Q 014977 167 -QIETLANLR-GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---------IKLINAH---DSHIACFTLTLDGLLLA 232 (415)
Q Consensus 167 -~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~---------~~~~~~~---~~~i~~l~~sp~g~~l~ 232 (415)
....+...+ ..+......|...||++|..|+.|++||++... ...+..| .-.+.++.....|.+|.
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 000111111 111123333456788877779999999987532 1122223 34577888888899988
Q ss_pred EEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccc
Q 014977 233 TASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQST 310 (415)
Q Consensus 233 s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 310 (415)
+.+.|+. |++|++.+.. ++..+.+.....--..-..+||+.+|++|+.|...++|.+.+.+....
T Consensus 288 AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~------------ 354 (720)
T KOG0321|consen 288 ASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA------------ 354 (720)
T ss_pred EEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh------------
Confidence 8888999 9999997643 344444321111112234689999999999999999999998874320
Q ss_pred ccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEe
Q 014977 311 ELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~ 388 (415)
.+++. + -.+..+.|.+. ..+++++.|-.+.+|.+.
T Consensus 355 -------------------------~l~Gh-------------t-----~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 355 -------------------------LLLGH-------------T-----REVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -------------------------hhhCc-------------c-----eEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 11111 1 23455777765 888888889999999995
Q ss_pred c
Q 014977 389 P 389 (415)
Q Consensus 389 ~ 389 (415)
.
T Consensus 392 ~ 392 (720)
T KOG0321|consen 392 N 392 (720)
T ss_pred C
Confidence 4
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=157.67 Aligned_cols=235 Identities=14% Similarity=0.183 Sum_probs=178.4
Q ss_pred CceEEEEEeCCC----CEEEEEe--CCcEEEEEccCCce-eEE---EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 45 IELISVSWNQDY----GCFAAGT--SCGFRIYNCEPFKE-TFR---RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 45 ~~V~~l~~sp~g----~~la~g~--d~~v~iw~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
.+|..+++.... .-++++. +...+.|++..... ... ..++.....+.+++.++.|.+.+.|... |
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-----G 470 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-----G 470 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-----C
Confidence 346666665322 1233333 77789999875332 111 1122345677888888888777777665 9
Q ss_pred eEEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 115 KVIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
.|.+|++.+|-....+ .|..+|++++...-++.++ .+|.+++||......+..+..... +.++..+....
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~---~~~iv~hr~s~ 547 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS---ITGIVYHRVSD 547 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC---cceeeeeehhh
Confidence 9999999999888888 3899999999998887777 799999999988887777755432 33333333333
Q ss_pred EEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 188 VLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 188 ~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
.++. +..|-.|.+ +....+.++.+.+|...|++++|||||++|++++.|++ |++||+.++.++-.+. -..+++.
T Consensus 548 l~a~-~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~---vd~~~~s 622 (910)
T KOG1539|consen 548 LLAI-ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLL---VDSPCTS 622 (910)
T ss_pred hhhh-hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEe---cCCccee
Confidence 4554 557778888 55566778899999999999999999999999999999 9999999999998887 4668999
Q ss_pred EEeCCCCCEEEEEeCC-CeEEEEEcee
Q 014977 267 IALSPNVQWLAVASDK-GTVHIFSLRV 292 (415)
Q Consensus 267 l~~spdg~~l~s~s~d-g~i~vwd~~~ 292 (415)
+.|+|+|.+||+...| .-|++|-=.+
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999999999999888 4699996443
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.8e-19 Score=172.56 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=194.5
Q ss_pred EEEEEeCCCC-EEEEEe-----------CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeE----EEEecCC
Q 014977 48 ISVSWNQDYG-CFAAGT-----------SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL----ALVGAGD 107 (415)
Q Consensus 48 ~~l~~sp~g~-~la~g~-----------d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~l~s~~~ 107 (415)
..++|+|++. ++|+|. +.++.||.++..... ....+ ....+...+.|.+.+. ++++|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 3578999887 555543 334566665422111 11111 3345566788877553 4788888
Q ss_pred CCCCCCCeEEEEECCC---CC---EEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977 108 NSQYPPTKVIIWDDHQ---SR---CIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~---~~---~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
| |.|.+||... +. .+.... |.+.|..+.|++... +++ .+|.|.|||+...+.-........+..
T Consensus 89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 7 9999999654 22 233333 999999999999765 666 789999999987554444433333446
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEecCc--cceEEEEeCCCCC-EEEEEeCCCc--EEEEEECCCC-
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHD--SHIACFTLTLDGL-LLATASTRGT--LIRIFNTVDG- 249 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~~--~~i~~l~~sp~g~-~l~s~s~dg~--~I~vwd~~~~- 249 (415)
+.+++|+.+-..++++++.+|.+.|||.+.+ .+..+..+. ..+..++|+|+.. .|++++.|.. .|.+||++.-
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 7888998887777777889999999998875 344444443 3477899999874 5666665542 4999998754
Q ss_pred cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977 250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG 328 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (415)
.+++++.. |...|.++.|++.+ ++|++++.|+.|.+|+.++++...++..+
T Consensus 244 sP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-------------------------- 295 (1049)
T KOG0307|consen 244 SPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-------------------------- 295 (1049)
T ss_pred Cchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--------------------------
Confidence 56677766 88899999999965 89999999999999999998854211111
Q ss_pred CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977 329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~ 389 (415)
.+-...+.|.+. +.+.+++-||.|-||++..
T Consensus 296 ------------------------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 296 ------------------------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ------------------------------CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 122334788887 6777777799999999975
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.6e-17 Score=140.40 Aligned_cols=245 Identities=14% Similarity=0.192 Sum_probs=175.1
Q ss_pred cCCCCCCceEEEEEeC-----CCCEEEEEeCCcEEEEEccCCc--eeEEEec-cCCCeeEEEEeee--CC--eEEEEecC
Q 014977 39 FSDVDEIELISVSWNQ-----DYGCFAAGTSCGFRIYNCEPFK--ETFRRDL-KSGGFRIVEMLFR--CN--ILALVGAG 106 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp-----~g~~la~g~d~~v~iw~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~~--~~~l~s~~ 106 (415)
...+|..+|..++|++ +-..+|+.+.+.+.||++.... ..+.... ..+......++|. .+ ..+++.++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 4678999999999995 2346777778899999987544 2222222 1233444444443 32 45677766
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEe---ccCCCcceE
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE---TLANLRGLC 178 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~ 178 (415)
.- |.|+|.|+.++++...+. |...|+.|.+.|+...++ .|..|++|++++..++..+. +|.. .++
T Consensus 113 ~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd--eVL 185 (385)
T KOG1034|consen 113 YL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD--EVL 185 (385)
T ss_pred ce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--cEE
Confidence 65 999999999999999888 999999999999874333 79999999999999998884 4554 677
Q ss_pred EEecCCCceEEEEeCCccCeEEEEEcCCcceE-----------------------------EEecCccceEEEEeCCCCC
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-----------------------------LINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-----------------------------~~~~~~~~i~~l~~sp~g~ 229 (415)
++.++.++..|++ ++.|.++++|.+..+... +-..|...|.|+.| -|.
T Consensus 186 SvD~~~~gd~i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd 262 (385)
T KOG1034|consen 186 SVDFSLDGDRIAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGD 262 (385)
T ss_pred EEEEcCCCCeeec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhh
Confidence 8888888888876 669999999998731110 11235555555555 357
Q ss_pred EEEEEeCCCcEEEEEEC-CCCc-------------EEEEEecCCCcccEEEEE--eCCCCCEEEEEeCCCeEEEEEceec
Q 014977 230 LLATASTRGTLIRIFNT-VDGT-------------RLQEVRRGVDRAEIYSIA--LSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~-~~~~-------------~~~~~~~~~~~~~v~~l~--~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
++++-+-++. |..|.. +-++ .+.++.- ....|+-+. |.|-+++||.|...|.|++||++..
T Consensus 263 ~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 8898888888 999976 2111 2223332 234555554 5567889999999999999999988
Q ss_pred ccC
Q 014977 294 VVG 296 (415)
Q Consensus 294 ~~~ 296 (415)
+..
T Consensus 340 ep~ 342 (385)
T KOG1034|consen 340 EPP 342 (385)
T ss_pred CCc
Confidence 753
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=1e-17 Score=154.25 Aligned_cols=249 Identities=13% Similarity=0.091 Sum_probs=174.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i 116 (415)
....|..+|..+.|-|...+|++++ |.++++||++..+..-...+-+|...+.+++|.+. -..+++|+.| |.|
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD-----g~i 169 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD-----GEI 169 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC-----CcE
Confidence 3467999999999999666777777 99999999997665443334488889999999984 5678889988 999
Q ss_pred EEEECCCCC--------------------EEEEE--------EccCceeE---EEEcCCeEEEE----eCCeEEEEEcCC
Q 014977 117 IIWDDHQSR--------------------CIGEF--------AFRSDVRS---VKLSRDRIVVV----LEHKIYVYSFVD 161 (415)
Q Consensus 117 ~vwd~~~~~--------------------~~~~~--------~~~~~i~~---l~~~~~~~~~~----~d~~i~iwd~~~ 161 (415)
.|||++-.. ..+.. .+...|.+ +.+..|...++ .|+.|+|||++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999965322 00000 02233333 44445555555 599999999976
Q ss_pred ceeeeEE------eccC---CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEecCcc--ceEEEEeCCC
Q 014977 162 LKLLHQI------ETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHDS--HIACFTLTLD 227 (415)
Q Consensus 162 ~~~~~~~------~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~~~~~--~i~~l~~sp~ 227 (415)
....... ..+. ....++++..+..|.+|.+.+ .|+.|++|+.....+ ..+.++.. .-..-..+|+
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 5432221 1122 245678888888888887755 699999998876433 33333321 1122346899
Q ss_pred CCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977 228 GLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 228 g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+.+|++|+.|.. .++|.+.+.+. ...+.+ |.-.|++++|.|.. .-++++++|.+++||++..+.+.
T Consensus 329 ~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 329 DCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred CceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 999999999999 99999987654 334445 77789999998843 34677799999999999776544
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=4.3e-18 Score=159.93 Aligned_cols=157 Identities=14% Similarity=0.193 Sum_probs=123.3
Q ss_pred ceeEEEEcC-CeEEEE---eCCeEEEEEcCC---ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-
Q 014977 135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVD---LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL- 206 (415)
Q Consensus 135 ~i~~l~~~~-~~~~~~---~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~- 206 (415)
.+.++.|.. +.++|+ ..|.|.+||+.. .+.+..|..|...+..++|+. -...++.+|+.||+|++|+++.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecc
Confidence 345667764 234455 689999999976 566677888887555555544 4445666799999999988775
Q ss_pred cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 207 NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 207 ~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
+...++.+....|..+.|+| .+.+++++.+.|. +++||++... +...+.. |.++|.++.|+|++.+||+|+.|++
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQPDRCEKKLTA--HNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCchhHHHHhhc--ccCceEEEeecCCCceeeecCCCcc
Confidence 44566777888999999998 5678889998898 9999998654 4555666 9999999999999999999999999
Q ss_pred EEEEEceecccC
Q 014977 285 VHIFSLRVRVVG 296 (415)
Q Consensus 285 i~vwd~~~~~~~ 296 (415)
|+|||+..++..
T Consensus 244 vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 244 VKIWDMTDSRAK 255 (839)
T ss_pred EEEEeccCCCcc
Confidence 999999987643
No 154
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=140.96 Aligned_cols=242 Identities=13% Similarity=0.157 Sum_probs=180.6
Q ss_pred EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeE
Q 014977 79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKI 154 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i 154 (415)
+.+.+.+|..++..++-.....++.+++.| .+-++|.+++|+|+.++. |.+.|++++|++.+.+++ .|++.
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASAD-----hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASAD-----HTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccc-----cceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 334456888888888877766788888887 999999999999999998 999999999999999888 68999
Q ss_pred EEEEcCC----ceeeeEEeccCCCcceEEEecCCCceEEEEe-CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCC
Q 014977 155 YVYSFVD----LKLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 155 ~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 229 (415)
+||...- .+.... ..|......-+ .+.+....-.. -+...+|++ ++..+++|.+.|.+..|-..|+
T Consensus 215 HIW~~av~~~vP~~~a~-~~hSsEeE~e~--sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAP-SDHSSEEEEEH--SDEHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred HHHHHhhcCcCCCCCCC-CCCCchhhhhc--ccccccccccccccCCceeee------eeeeeeccccceEehhhhcCcc
Confidence 9997421 110000 00100000000 01111111000 011123433 4567889999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcc
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQS 309 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 309 (415)
.+++++.|.+ ..+||+++|+++..+.+ |....+.++-+|..+++++.+.|.+.++||++..-.
T Consensus 286 Q~vTaSWDRT-AnlwDVEtge~v~~LtG--Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-------------- 348 (481)
T KOG0300|consen 286 QMVTASWDRT-ANLWDVETGEVVNILTG--HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-------------- 348 (481)
T ss_pred eeeeeecccc-ceeeeeccCceeccccC--cchhccccccCCcceEEEEeccCceeEeccchhhcc--------------
Confidence 9999999999 99999999999999999 888999999999999999999999999999984321
Q ss_pred cccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 310 TELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
..+-|+-..+.+..+.|.-+.+++.++.|-+|.+|.+..
T Consensus 349 -----------------------------------------sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 349 -----------------------------------------SVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred -----------------------------------------eeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence 122344445677778898889999999999999999987
Q ss_pred CCC
Q 014977 390 VHG 392 (415)
Q Consensus 390 ~~~ 392 (415)
++.
T Consensus 388 MRs 390 (481)
T KOG0300|consen 388 MRS 390 (481)
T ss_pred ccC
Confidence 543
No 155
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.8e-16 Score=138.24 Aligned_cols=307 Identities=12% Similarity=0.047 Sum_probs=207.1
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (415)
....+|.+.|+++.|+.++++||+|+ |..++||.++.. +.+. ..-+.|...|.++.|.....++.+|+.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~-- 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERW-- 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCeeEecCCCc--
Confidence 44678999999999999999999999 899999999731 1111 1123556889999999999999999998
Q ss_pred CCCCeEEEEECCCCCEEEEEEcc---CceeEEEEcCCeEEEE---eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecC
Q 014977 111 YPPTKVIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 183 (415)
++|...|+++.+.+..+.|. +.|+.+..+|....++ .++.|.+||.+... .+..+-....+......-++
T Consensus 127 ---~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 127 ---GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred ---ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 99999999999999998864 4999999999766655 68999999997654 33222222222344445555
Q ss_pred CCceEEEEeCCccCeEEEEEcCCcceEEE--------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEE
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGLNMIKLI--------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQE 254 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~~~~~~~--------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~ 254 (415)
|....|+.+.+..+-+-+|+.+......+ ......-..+.|+|+|..|.+--.... -.+||+.+..+ +..
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLK 282 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEe
Confidence 55555555677888899998876432211 111223367889999998887776666 67888876443 223
Q ss_pred Ee----cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977 255 VR----RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN 330 (415)
Q Consensus 255 ~~----~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (415)
+. +......+.+++|..| ..+++|+.+=.|++|.+.......
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~--------------------------------- 328 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSY--------------------------------- 328 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCcccc---------------------------------
Confidence 32 1111235778888765 448999999999999987643221
Q ss_pred CCCccccccc---ccCcccccccceEEEEeCCCceEEEEecCCCE-EEEEEeCCcEEEEEEe
Q 014977 331 PGSSLSFMRG---VLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNT-VVIVSMDGSFYRCSFD 388 (415)
Q Consensus 331 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~dg~~~~~~~~ 388 (415)
.+..+++ .+|.-+--+..+.-.+-....+..+.|++.+. |+..|-+..+.+|+-.
T Consensus 329 ---G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 329 ---GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ---CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1111111 12221112233334444456667789999855 4555558999998643
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.8e-17 Score=148.42 Aligned_cols=214 Identities=12% Similarity=0.148 Sum_probs=172.9
Q ss_pred EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
.|++......++++|+ .+.|+|||+.. +...+.+.+|...|.++.|+....++++++.. |.|.|..+.++..
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~~ 155 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQK 155 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCcc
Confidence 3444444447888888 99999999983 33444567899999999999999999999987 9999999999988
Q ss_pred EEEEEc--cCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 127 IGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 127 ~~~~~~--~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
..++.+ ...|+-+.|++..+.++ .+|.|.+||+....++..+ ..|..+..-+||++... .+|++. +.|..|
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-~l~vsV-G~Dkki 233 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-ALLVSV-GYDKKI 233 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc-ceEEEe-cccceE
Confidence 888885 45677899999877766 6899999999877766555 66777777788887754 345554 489999
Q ss_pred EEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCC
Q 014977 200 RIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
.+++...+....-.....+...++|+++|.+|++|+..|. |..||++.. .++.++.. |...|++++|-|..
T Consensus 234 ~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP 305 (673)
T ss_pred EEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence 9988887665555566789999999999999999999999 999999865 46777777 88889999998764
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.2e-16 Score=148.69 Aligned_cols=246 Identities=12% Similarity=0.144 Sum_probs=182.1
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE--eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
....||.+.|..++|+|.|.+|.+.+ |.+-|||-.-..+..... .-+-|+-...++.+-+....++++.+. .
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-----K 429 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE-----K 429 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc-----e
Confidence 34689999999999999999999988 999999865422221111 012455556677777745556666665 6
Q ss_pred eEEEEECCC-------------------------------------------CCE----E--------------------
Q 014977 115 KVIIWDDHQ-------------------------------------------SRC----I-------------------- 127 (415)
Q Consensus 115 ~i~vwd~~~-------------------------------------------~~~----~-------------------- 127 (415)
.+++++... |.. .
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 777776320 100 0
Q ss_pred ----------EEEEccCceeEEEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 128 ----------GEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 128 ----------~~~~~~~~i~~l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
+.+.|...|.+++.+|++++++ ....|++|+..+-..++.+..|.- ++..+.++|++++|
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL--TVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL--TVTRLAFSPDGRYL 587 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce--EEEEEEECCCCcEE
Confidence 0012446799999999999999 245799999988888877887775 78888888899999
Q ss_pred EEeCCccCeEEEEEcCCcc-----eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cEEEEEecCCCcc
Q 014977 190 ACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVDRA 262 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~~~ 262 (415)
++ .+.|+++.+|...... ....+.|..-|.++.|+|++.+++++|.|.+ |+||..... +.+..+....+..
T Consensus 588 Ls-vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~~ 665 (764)
T KOG1063|consen 588 LS-VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFSL 665 (764)
T ss_pred EE-eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccCC
Confidence 87 4589999998764322 2336789999999999999999999999999 999998877 5554433333677
Q ss_pred cEEEEEeCC-----CCCEEEEEeCCCeEEEEEcee
Q 014977 263 EIYSIALSP-----NVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 263 ~v~~l~~sp-----dg~~l~s~s~dg~i~vwd~~~ 292 (415)
.|+.++|.| .+..+++|-..|.|.+|....
T Consensus 666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred ceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 899999886 223778899999999999763
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=6.8e-17 Score=135.58 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=177.7
Q ss_pred CCCCCCceEEEEEeCCC-CEEEEEe----C----CcEEEEEccCC-c--------eeEEEeccCCCeeEEEEeeeCCeEE
Q 014977 40 SDVDEIELISVSWNQDY-GCFAAGT----S----CGFRIYNCEPF-K--------ETFRRDLKSGGFRIVEMLFRCNILA 101 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g-~~la~g~----d----~~v~iw~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (415)
..-|.+.|+.++-+|.. +.|+++. + ..+.||.+... + .+..... .+...+.++.|.|++..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCe
Confidence 34577899999999954 5666554 1 23679998531 1 1111111 33447889999999988
Q ss_pred EEecCCCCCCCCCeEEEEECCCCCE-EEEEE------ccCceeEEEEcC--CeEEEE--eCCeEEEEEcCCceeeeEEe-
Q 014977 102 LVGAGDNSQYPPTKVIIWDDHQSRC-IGEFA------FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIE- 169 (415)
Q Consensus 102 l~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~------~~~~i~~l~~~~--~~~~~~--~d~~i~iwd~~~~~~~~~~~- 169 (415)
+++-.+ ..|.+|++..+.. +..+. +....++-+|+| ++..++ .|+++..||+++.++...+.
T Consensus 138 lasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 138 LASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred eEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 887654 8999999988765 44443 355677788887 677777 79999999999988776663
Q ss_pred ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEEC
Q 014977 170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~ 246 (415)
.|.. .+..+.++|+...++++++.||.|+||+.+. .+++.+.+|...+.++.|+|. .++|++++.|.. |.+|..
T Consensus 212 AHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca 288 (370)
T KOG1007|consen 212 AHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCA 288 (370)
T ss_pred hhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEec
Confidence 4444 5667777777777777888999999999775 568889999999999999995 468889999999 999864
Q ss_pred CCC-----------------------------cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceec
Q 014977 247 VDG-----------------------------TRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 247 ~~~-----------------------------~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~ 293 (415)
.+- ..+.++.. |...|.+++||.-.. .+|+-+.||.+.|=.+...
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 321 12234444 778999999997555 5678899999988665543
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=136.26 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=162.0
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.++|.+.|+++.|-.+++ |.+|. .|.|++|.+.+........+ .+...+..+..-++ ..+.+-+.| ..+.+
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd-----~~L~l 81 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRD-----PLLIL 81 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCC-----ceEEE
Confidence 558999999999998877 66777 99999999988665544332 45566666666666 445555665 88888
Q ss_pred EECCCCCEEEEEE------------------------------------------------------ccCceeEEEEcC-
Q 014977 119 WDDHQSRCIGEFA------------------------------------------------------FRSDVRSVKLSR- 143 (415)
Q Consensus 119 wd~~~~~~~~~~~------------------------------------------------------~~~~i~~l~~~~- 143 (415)
|++.-+..+..-. ..+.+.+..+..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 8865432211100 002233333221
Q ss_pred CeE-EEE----eCCeEEEEEcCCceeee----------EEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-
Q 014977 144 DRI-VVV----LEHKIYVYSFVDLKLLH----------QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN- 207 (415)
Q Consensus 144 ~~~-~~~----~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~- 207 (415)
.+. .++ .+|.+.+||+.++..+- ....|..++..+.++..-++- + +|+.+..+..|..+..
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG--i-sgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG--I-SGGADDKLVMYSLNHST 238 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC--c-CCCccccceeeeecccc
Confidence 122 222 68999999998874332 233455544444444332221 1 3445555555554432
Q ss_pred ----ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 208 ----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 208 ----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
....+...+-.+..+.+-||++.+|+++.|+. ||||..++..++..++. |.+.|++++|+|+...+|+++.|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCc
Confidence 22233344567888999999999999999999 99999999999999998 889999999999999999999999
Q ss_pred eEEEEEc
Q 014977 284 TVHIFSL 290 (415)
Q Consensus 284 ~i~vwd~ 290 (415)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999996
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-17 Score=152.51 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=88.3
Q ss_pred CccCeEEEEEcCC--------cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977 194 LQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 194 ~~dg~v~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
.+||.|++|.... .+...++.|...|+++.|+|- ...|++++.|.+ |++||+.+++....+.+ |...|
T Consensus 647 ~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqI 723 (1012)
T KOG1445|consen 647 TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQI 723 (1012)
T ss_pred ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCce
Confidence 3788888887653 445678899999999999994 457999999999 99999999999889998 88999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+++|||||+.+|+.+.||+|+||+-++++..
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 99999999999999999999999998887653
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.7e-17 Score=136.50 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=151.5
Q ss_pred EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee
Q 014977 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL 165 (415)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~ 165 (415)
..++.|++.|.+++.|..+ |.|.+||+.+...-+.+. |-.+|.+++|+++|+.++ .|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 6788999999999999988 999999999988777777 999999999999999998 6999999999999999
Q ss_pred eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC-c----cceEEEEeCCCCCEEEEEeCCCcE
Q 014977 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH-D----SHIACFTLTLDGLLLATASTRGTL 240 (415)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~-~----~~i~~l~~sp~g~~l~s~s~dg~~ 240 (415)
+.+.- ..++....+++..++..+++-- +..-.+-......-..+... . ....+..|.+.|+++++|...|.
T Consensus 101 ~rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk- 176 (405)
T KOG1273|consen 101 KRIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK- 176 (405)
T ss_pred eEEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence 88864 4567778888887777776532 22222211111111111111 1 11223358899999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+.++|..+.+++..++.. ....|..+.|+..|++|+.-+.|..|+.|+++.
T Consensus 177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 999999999999888863 236799999999999999999999999999874
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=2e-16 Score=138.58 Aligned_cols=252 Identities=16% Similarity=0.125 Sum_probs=179.1
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEcc--------C------CceeEEEeccCCCeeEEEEeeeCCeEE
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE--------P------FKETFRRDLKSGGFRIVEMLFRCNILA 101 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (415)
......|..+|+++.|+|+|.+||+|+ +|.|.+|... + ...+..+.+.+|...+..++|.+++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 345688999999999999999999999 8899999876 2 112334455678889999999999999
Q ss_pred EEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe--------
Q 014977 102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE-------- 169 (415)
Q Consensus 102 l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~-------- 169 (415)
+++++-| +.+++||+..|+.+..+. |...+..++|.|-+++++ .|...+++.+...+.++...
T Consensus 138 l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 138 LVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred eeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 9999988 999999999999999887 999999999999999888 46656666654332222111
Q ss_pred -------------ccCCCcceEEEecCCCceEEEEeCC---ccCeE--EE-EEcCC----cceEEEecCccceEEEEeCC
Q 014977 170 -------------TLANLRGLCCLSHHSSTSVLACPGL---QRGQV--RI-EHFGL----NMIKLINAHDSHIACFTLTL 226 (415)
Q Consensus 170 -------------~~~~~~~~~~~~~~~~~~~l~~~g~---~dg~v--~i-~~~~~----~~~~~~~~~~~~i~~l~~sp 226 (415)
...-......+++.|+|.+++..+. ..+.+ .. +..+. ++...+..-..+...+.|+|
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 0011112334566778877765321 11122 11 22222 23333334444444555443
Q ss_pred ------------------CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977 227 ------------------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (415)
Q Consensus 227 ------------------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 288 (415)
.+..+|.++.+ . |+|||.++-.++..+..- |-..|++++|++||..|+..+.||...+-
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eEEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEE
Confidence 33446666655 5 999999998888777654 77799999999999999999999988888
Q ss_pred EceecccC
Q 014977 289 SLRVRVVG 296 (415)
Q Consensus 289 d~~~~~~~ 296 (415)
-++..+-+
T Consensus 370 tfe~~elg 377 (434)
T KOG1009|consen 370 TFEPWELG 377 (434)
T ss_pred EEcchhcc
Confidence 88776654
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.7e-14 Score=133.37 Aligned_cols=221 Identities=11% Similarity=0.102 Sum_probs=142.7
Q ss_pred CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEec-CCCCCCCCCeEEEEECC-CCCE--EEEEEccCceeE
Q 014977 64 SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGA-GDNSQYPPTKVIIWDDH-QSRC--IGEFAFRSDVRS 138 (415)
Q Consensus 64 d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~~~~~~i~vwd~~-~~~~--~~~~~~~~~i~~ 138 (415)
++.|.+|++.+.+. .....+ ........+.++|++..|..+ ..+ +.|.+|++. +++. +...........
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCceE
Confidence 99999999974322 222333 223345567889988765443 333 899999986 3433 223334456778
Q ss_pred EEEcCCeEEEE----eCCeEEEEEcCC-ce---eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cce
Q 014977 139 VKLSRDRIVVV----LEHKIYVYSFVD-LK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI 209 (415)
Q Consensus 139 l~~~~~~~~~~----~d~~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~ 209 (415)
+.++|++++++ .++.|.+|++.+ +. .+..+.... ....+.++|++++++++...++.|.+|+.+. ..+
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 99999998776 478999999963 32 222222212 2334455667777777677889999988754 211
Q ss_pred E-----EEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCC--Cc--EEEEEecCC----CcccEEEEEeCCCCC
Q 014977 210 K-----LIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD--GT--RLQEVRRGV----DRAEIYSIALSPNVQ 274 (415)
Q Consensus 210 ~-----~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~--~~--~~~~~~~~~----~~~~v~~l~~spdg~ 274 (415)
. ... ........++|+|+|++|++++. ++. |.+||+.. ++ .+..+.... +......+.|+|+|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 111 12334578999999999988877 777 99999973 33 233333210 111234688999999
Q ss_pred EEEEEeC-CCeEEEEEceecc
Q 014977 275 WLAVASD-KGTVHIFSLRVRV 294 (415)
Q Consensus 275 ~l~s~s~-dg~i~vwd~~~~~ 294 (415)
+|+++.. ++.|.+|+++...
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCC
Confidence 9998854 6899999997643
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.2e-15 Score=127.74 Aligned_cols=200 Identities=18% Similarity=0.248 Sum_probs=146.2
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC----EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR----CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI 154 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~----~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i 154 (415)
+|..-+.++.|+.-|..+++++.| ++|+|||.+... +....+ |.+.|..+.|.+- |+.++ .|+++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred CCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 566778899999999999999998 999999965432 333344 8999999999653 67776 79999
Q ss_pred EEEEcCC---------ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-------cceEEE------
Q 014977 155 YVYSFVD---------LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------NMIKLI------ 212 (415)
Q Consensus 155 ~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------~~~~~~------ 212 (415)
.||.=.. -....++......+.-++|+|..-|..||+ ++.||.++|+.... .....+
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9998411 112334444555567778888888888876 66899999965432 111112
Q ss_pred -ecCccceEEEEeCCC---CCEEEEEeCC-----CcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCC----CE
Q 014977 213 -NAHDSHIACFTLTLD---GLLLATASTR-----GTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNV----QW 275 (415)
Q Consensus 213 -~~~~~~i~~l~~sp~---g~~l~s~s~d-----g~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg----~~ 275 (415)
..+..+..|+.|+|. ..+||.|+.+ +. ++||....+. .+.++.+ |..+|++|+|.|+- .+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCceee
Confidence 246677889999974 3578888876 35 8888765432 3445665 88899999999952 47
Q ss_pred EEEEeCCCeEEEEEceecc
Q 014977 276 LAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~~~~ 294 (415)
||+++.|| |+||+++...
T Consensus 242 lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred EEEeecCc-EEEEEEeecc
Confidence 99999999 9999998754
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1e-16 Score=148.42 Aligned_cols=241 Identities=17% Similarity=0.199 Sum_probs=185.0
Q ss_pred CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
+.+...+|++.|++++|+.||+++|+|+ |..|.||+-.-.+ .++ . .|...+.+|.|+|-...+++++- .
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk--Y-SH~D~IQCMsFNP~~h~LasCsL------s 114 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK--Y-SHNDAIQCMSFNPITHQLASCSL------S 114 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee--e-ccCCeeeEeecCchHHHhhhcch------h
Confidence 4567899999999999999999999999 9999999865422 232 2 68889999999999999999876 6
Q ss_pred eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec---cCCCcceEEEecCCC---
Q 014977 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSS--- 185 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~--- 185 (415)
..-+|.... +.+...+....+.+.+|..||.+++ .+|+|.+-+- +++....++. ...++..++++++..
T Consensus 115 dFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 115 DFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred hccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 778898543 3444455667889999999999998 7999999874 4444444433 445556666665432
Q ss_pred ceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 186 TSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
...+++ .....++.++..+++.+..-+.-.-...|+.+-++|.++..|+.|+. +.+|- +.|-.+.++.. ....|+
T Consensus 193 ~di~aV-~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIW 267 (1081)
T KOG1538|consen 193 NDILAV-ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIW 267 (1081)
T ss_pred cceEEE-EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEE
Confidence 123333 34555666666666666554455556678999999999999999999 99995 68888888766 667999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.++..|++++++.|+.||+|--|++-..
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhHHh
Confidence 9999999999999999999999987543
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.9e-15 Score=133.99 Aligned_cols=236 Identities=10% Similarity=0.046 Sum_probs=161.7
Q ss_pred eEEEEEeCCCCEEEEEe--CC--cEEEEEccCCc-eeEEEeccCCCee----EEEEeee-------CCeEEEEecCCCCC
Q 014977 47 LISVSWNQDYGCFAAGT--SC--GFRIYNCEPFK-ETFRRDLKSGGFR----IVEMLFR-------CNILALVGAGDNSQ 110 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~-~~~~~~~~~~~~~----~~~~~~~-------~~~~~l~s~~~d~~ 110 (415)
.-.+..-|+..+++++. ++ .+.+|-.+... ..+. .|..- ..|+.|. ..+.++|.|..+
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv----HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd-- 201 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV----HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD-- 201 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE----ecceeccCcchhhhhhhcCCCCCCCcceEEEeccC--
Confidence 34556678777888877 32 34444444322 2221 12211 1222322 236788888887
Q ss_pred CCCCeEEEEECCCC---CEEEEE-------------------EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee
Q 014977 111 YPPTKVIIWDDHQS---RCIGEF-------------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL 164 (415)
Q Consensus 111 ~~~~~i~vwd~~~~---~~~~~~-------------------~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~ 164 (415)
..|.|||+.-- .+..++ .|...|.++.|+..-+.++ .|.+|++||+.++++
T Consensus 202 ---p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p 278 (463)
T KOG0270|consen 202 ---PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP 278 (463)
T ss_pred ---ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc
Confidence 89999996421 111111 1667788889988765555 699999999999999
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIR 242 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~ 242 (415)
...+..|...+..+.|.+. ...++.+|+.|++|.+.+.+. ......-.-.+.|-.++|.|... .++++..||. |+
T Consensus 279 ~~s~~~~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~ 355 (463)
T KOG0270|consen 279 KSSITHHGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VY 355 (463)
T ss_pred ceehhhcCCceeEEEecCC--CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EE
Confidence 9999888885555555544 434445699999999955542 22222222357788999999765 5667778899 99
Q ss_pred EEECCCC-cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977 243 IFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 243 vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
-+|++.. +++.+++. |.++|.+|++++.- .+|++++.|+.|++|++......
T Consensus 356 ~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 356 YFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999865 88999998 88999999998754 57889999999999999876543
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=6.5e-14 Score=133.02 Aligned_cols=246 Identities=18% Similarity=0.297 Sum_probs=185.8
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEee-eCCeE-EEEecCC-CCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLF-RCNIL-ALVGAGD-NSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s~~~-d~~~~~ 113 (415)
....|...|..+.|.+.+..++.++ ++.+.+|+..... ....... .+...+..+.. .+++. .++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 4578999999999999999999998 9999999998754 2222221 12123444444 66665 4444333 5
Q ss_pred CeEEEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE---e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~---~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+.+.+|+... ......+. |...|..+.|+|++..++ . ++.+++|++..++.+..+..|...+..+.+. +++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 211 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS--PDGG 211 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc--CCcc
Confidence 8999999887 66666665 889999999999997665 3 8999999999888888888877755555555 6665
Q ss_pred EEEEeCCccCeEEEEEcCC-cceE-EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccE
Q 014977 188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEI 264 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v 264 (415)
.++.+++.|+.|++|+... .... .+..|.... ...|+|++.++++++.|+. +++|++..... +..+.. |...+
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v 287 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV 287 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence 4444457899999997663 3444 477777775 4489999989999999999 99999987765 444433 67799
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.++.|+|++..+++++.|+.+.+|++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 99999999898888999999999988777643
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=5.5e-15 Score=136.73 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=156.8
Q ss_pred CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
+.+....++++|++++|+++. ++.|.+|+++.... ...... ........+.+++++..++++.. .++.|.+|
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~----~~~~v~v~ 107 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASY----NANCVSVS 107 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEc----CCCeEEEE
Confidence 345677899999999998776 88999999973222 222222 12224567889999876666543 13899999
Q ss_pred ECCC-C---CEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeE-----EeccCCCcceEEEecCCCc
Q 014977 120 DDHQ-S---RCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQ-----IETLANLRGLCCLSHHSST 186 (415)
Q Consensus 120 d~~~-~---~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 186 (415)
++.+ + +.+..+.+......++++|++++++ .++.|.+||+.+...+.. ..... ......+.+++++
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 9864 3 2233333445577889999987775 579999999976332211 11111 1123455666777
Q ss_pred eEEEEeCCccCeEEEEEcCC-----cceEEEecC------ccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCc----
Q 014977 187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAH------DSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT---- 250 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~---- 250 (415)
++++++...++.|.+|+.+. +.+..+..+ ......+.++|+|++|+++.. ++. |.+|++....
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~~ 265 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVLS 265 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeEE
Confidence 78777655689999987752 122333221 112346889999999998865 566 9999986443
Q ss_pred EEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEcee
Q 014977 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV 292 (415)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~ 292 (415)
.+..+.. ......+.|+|||++|+++.. +++|.+|+++.
T Consensus 266 ~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 266 FEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 2222222 124567899999999998775 88999999864
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.4e-16 Score=142.65 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=153.8
Q ss_pred EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeE
Q 014977 79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKI 154 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i 154 (415)
....+.+|...+.++...+.|..|++|++| |+|+||.+.+|.+++++...+.|.+++|+|....-+ .+..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence 334456899999999999999999999998 999999999999999999999999999999754322 34444
Q ss_pred EEEEcCCce---------e----------------------------eeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977 155 YVYSFVDLK---------L----------------------------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 155 ~iwd~~~~~---------~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (415)
.|.+..-|. . +...-.|.. .+..+.|+..|.+|+++...++
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k--~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK--SIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC--ccceeeeecCCceEEEeccCCC
Confidence 444431110 0 011111222 4456677788888887664443
Q ss_pred --eEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 198 --QVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 198 --~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
.|.|..+.... ...|....+.+.++.|+|...+|++++.. . |+|||+...+.++++.. ....|..++.+|.|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~-vRiYdL~kqelvKkL~t--g~kwiS~msihp~GD 620 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-S-VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGD 620 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-c-eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCC
Confidence 45555544433 33455567889999999999998888865 4 99999988877777766 455899999999999
Q ss_pred EEEEEeCCCeEEEEEceeccc
Q 014977 275 WLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 275 ~l~s~s~dg~i~vwd~~~~~~ 295 (415)
-|+.++.|+.+..||++-..+
T Consensus 621 nli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred eEEEecCCCeeEEEEcccCcc
Confidence 999999999999999987654
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.3e-14 Score=127.43 Aligned_cols=285 Identities=16% Similarity=0.189 Sum_probs=187.6
Q ss_pred CCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCC-------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPF-------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 43 h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
...+|..+.|.++.. .||+|+ |..|+||.++.. ...+...+..|...+..+.|++++.++++|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~----- 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG----- 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-----
Confidence 456899999999877 999999 999999988632 223344567889999999999999999999998
Q ss_pred CeEEEEECC--------C-----C---CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC
Q 014977 114 TKVIIWDDH--------Q-----S---RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 114 ~~i~vwd~~--------~-----~---~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
+.|.+|... + . ...+.+. |...|..++|+|++.+++ .|+.+++||+..|+.+..+..|.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999855 2 1 1112222 789999999999999988 799999999999999999998887
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEEcC----CcceE------------------EEe--cCccceEEEEeCCCCC
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----LNMIK------------------LIN--AHDSHIACFTLTLDGL 229 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~----~~~~~------------------~~~--~~~~~i~~l~~sp~g~ 229 (415)
.+..++|+|-+++++.-+ .|...+..... ...+. .+. .-..-...++|+|+|.
T Consensus 167 --yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 167 --YVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred --ccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 455566666677776533 44433332211 11111 110 0112345688999999
Q ss_pred EEEEEeC----CCc----EEEEEECCCC-cEEEEEecCCCcccEEEEEeCC------------------CCCEEEEEeCC
Q 014977 230 LLATAST----RGT----LIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP------------------NVQWLAVASDK 282 (415)
Q Consensus 230 ~l~s~s~----dg~----~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp------------------dg~~l~s~s~d 282 (415)
+|++.+. .+. ..++|+-+.. ++...+.. ...+...+.|+| -+-.+|.++.
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~- 320 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK- 320 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence 9987542 222 0345543221 23333333 222344444432 2234555554
Q ss_pred CeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 014977 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH 362 (415)
Q Consensus 283 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (415)
+.|+|||.++-+..- .--.+.....
T Consensus 321 ~svyvydtq~~~P~~-------------------------------------------------------~v~nihy~~i 345 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLA-------------------------------------------------------VVDNIHYSAI 345 (434)
T ss_pred ceEEEeccccccceE-------------------------------------------------------EEeeeeeeee
Confidence 459999988765321 0011122345
Q ss_pred EEEEecCC-CEEEEEEeCCcEEEEEEecCCCC
Q 014977 363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGG 393 (415)
Q Consensus 363 ~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~ 393 (415)
+.++|+.+ +.+++.+-||..-...|++.+-|
T Consensus 346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 56899999 66777777999999899887666
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=2.8e-15 Score=128.08 Aligned_cols=238 Identities=16% Similarity=0.240 Sum_probs=171.1
Q ss_pred CCCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCC
Q 014977 41 DVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT 114 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~ 114 (415)
.+|.+..+.++|+-| ..+||+|+ -|.|+|.|+...+.. ..+.+|+..|.++.+.|.. .++++++.| .
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD-----~ 158 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKD-----H 158 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCC-----c
Confidence 468888999999854 34788877 999999999875543 3345899999999999964 778888888 9
Q ss_pred eEEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe------------------
Q 014977 115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE------------------ 169 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~------------------ 169 (415)
.|++|++.+..++..+. |...|.++.|+.++..++ .|..|++|++...+....++
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99999999999999986 899999999999999998 79999999997322111110
Q ss_pred ----------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---------------cceEEEecCccceEEE--
Q 014977 170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACF-- 222 (415)
Q Consensus 170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---------------~~~~~~~~~~~~i~~l-- 222 (415)
.|.+ .+-|+.|-+ .++++ -+-++.|..|.... ..+..+.-....|+-+
T Consensus 239 ~~fp~fst~diHrn--yVDCvrw~g--d~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 239 THFPDFSTTDIHRN--YVDCVRWFG--DFILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccc--hHHHHHHHh--hheee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 0111 111122222 24443 34566777787621 1122233334445544
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEECCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRL--QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 223 ~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+|.|-++.||.|...|. |.+||++..++. .++........|...+|+.||.+|+...+|++|.-||..
T Consensus 314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 45677889999999999 999999877652 233322234579999999999999999999999999864
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.1e-16 Score=142.85 Aligned_cols=249 Identities=12% Similarity=0.152 Sum_probs=177.8
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC------CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...|.+.|+.++|+|....|++++ ++.+++|+++. ........|.+|...|.+++...++..+.+++.|
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D---- 365 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID---- 365 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC----
Confidence 467888999999999999999999 99999999932 1222334567999999999999999999999998
Q ss_pred CCeEEEEECCCC------C----EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceE
Q 014977 113 PTKVIIWDDHQS------R----CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLC 178 (415)
Q Consensus 113 ~~~i~vwd~~~~------~----~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 178 (415)
|+|+.|++... . ....+. |...|+.+++++....++ .||+++.|+...... ..+..........
T Consensus 366 -g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 -GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred -ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999964321 1 122233 889999999998665555 699999999865544 3333222222222
Q ss_pred EEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
.+..-.....+.++...-+.-.+++... ..+..+.. ....+..+.++|.+.+.+++..|+. |+++|..+++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~ 522 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGK 522 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccccc
Confidence 2322221111212111222222222221 22222221 1245677889999999999999999 9999999999
Q ss_pred EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
.+..... |...++++++.|+|.+|++++.|+.+++|.+..+.+..
T Consensus 523 ~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 523 ILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9988887 88899999999999999999999999999998887654
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=4.7e-15 Score=124.77 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=167.7
Q ss_pred CCCCCceEEEEEeCCCC-----EEEEEeCCcEEEEEccCCceeEE--Eec-----cCCCeeEEEEeeeC-CeEEEEecCC
Q 014977 41 DVDEIELISVSWNQDYG-----CFAAGTSCGFRIYNCEPFKETFR--RDL-----KSGGFRIVEMLFRC-NILALVGAGD 107 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~-----~la~g~d~~v~iw~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~ 107 (415)
.+|.-+++.+.|.|+.. +||+ ++..+|+|.+...+.... ..+ ......++++.|+. +-.++.+.+-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 57889999999999874 4444 456889999974222111 111 23455677888876 5567777777
Q ss_pred CCCCCCCeEEEEECCCCCE----EEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCC-CcceE
Q 014977 108 NSQYPPTKVIIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN-LRGLC 178 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~ 178 (415)
| .+..|||++++.. .+.+.|..+|.+++|..++.-++ .||.+++||++..+....+..... .....
T Consensus 172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 7 9999999999733 33345999999999999766554 799999999998776665544333 34567
Q ss_pred EEecCCCc-eEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCc----
Q 014977 179 CLSHHSST-SVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT---- 250 (415)
Q Consensus 179 ~~~~~~~~-~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~---- 250 (415)
.++++++. .++|+.+-....|.|-+.+ ..++..+++|.+.|+.|+|.|.. ..|++++.|.. +.+||+...-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG 325 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence 77777654 3555545455567774444 46688899999999999999964 58999999998 9999996532
Q ss_pred --EEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEE
Q 014977 251 --RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIF 288 (415)
Q Consensus 251 --~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vw 288 (415)
++..+. ..+.|+.+.|++ .+.+|+.+... .+.+.
T Consensus 326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred CCchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 222222 345899999996 56788877644 35443
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.2e-14 Score=134.29 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=199.7
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...|.-.+++.++||+++++|+|. ||.|.+|.--. ........++-|...+.++.|+++|.+|.+|+.. +.+
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-----~VL 275 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-----GVL 275 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-----eEE
Confidence 345777799999999999999999 99999996532 2222223456788899999999999999999998 999
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC---------cceEEEecCC
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL---------RGLCCLSHHS 184 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 184 (415)
.+|.+.+++....-+..+.|..+.++||+.+.+ .|+.|.+....+......+.+...+ .-...+..+|
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 999999998333334789999999999988776 8999999988776655544432211 1122334444
Q ss_pred CceEEEEeCCccCeEEEEEcCC-cceEEEe-----------cCccceEEEEeCCCCCEEEEEeC--------CCc-EEEE
Q 014977 185 STSVLACPGLQRGQVRIEHFGL-NMIKLIN-----------AHDSHIACFTLTLDGLLLATAST--------RGT-LIRI 243 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~-----------~~~~~i~~l~~sp~g~~l~s~s~--------dg~-~I~v 243 (415)
.-..++. ....|.|++++... ..+..+. .+.-.+++++.+-.|.++++.-. ||. .+++
T Consensus 356 r~~~~vl-n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 356 RTNSLVL-NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCceee-cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 3334555 45899999966543 3333332 12335677888888999988643 322 3788
Q ss_pred EECCCCc----EEEEEecCCCcccEEEEEe-CCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCC
Q 014977 244 FNTVDGT----RLQEVRRGVDRAEIYSIAL-SPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS 317 (415)
Q Consensus 244 wd~~~~~----~~~~~~~~~~~~~v~~l~~-spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (415)
|-..... +...+... |...+...+| ++... ..++++.||.++||-+...+...+..
T Consensus 435 W~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----------------- 496 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----------------- 496 (792)
T ss_pred EEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-----------------
Confidence 9765433 33334333 5544444444 44333 78999999999999997665431000
Q ss_pred CCcccCCCCCCCCCCCcccccccccCcccccccceEEEE-eCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH-IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
+.|...-+. ....+...++|+.++.+++++.|+.|-+|..+.
T Consensus 497 ------------------------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 497 ------------------------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ------------------------------cceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 011100000 012344568899999999999999999999987
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=3.3e-14 Score=119.75 Aligned_cols=239 Identities=14% Similarity=0.140 Sum_probs=167.8
Q ss_pred CCceEEEEEeC--C-CCEEEEEe-----CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCe-----EEEEecCCC
Q 014977 44 EIELISVSWNQ--D-YGCFAAGT-----SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNI-----LALVGAGDN 108 (415)
Q Consensus 44 ~~~V~~l~~sp--~-g~~la~g~-----d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d 108 (415)
.-.++++.|+. + +.+||.|+ .+.|.|-.++ +++.+....| .+.-.+..+.|.|+. .+|++.+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence 44688999983 3 45788887 4667776664 3333333334 677778888888865 3566655
Q ss_pred CCCCCCeEEEEECCC--CCEEEE--------EEccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCce---eeeEEecc
Q 014977 109 SQYPPTKVIIWDDHQ--SRCIGE--------FAFRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLK---LLHQIETL 171 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~--~~~~~~--------~~~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~---~~~~~~~~ 171 (415)
..+++|.+.. .+...+ -.+..++++..|+.-. +++. .|-+..|||++++. ...++-.|
T Consensus 121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 6899999763 222111 1257889999998743 3444 69999999998863 35566778
Q ss_pred CCCcceEEEecCCCc-eEEEEeCCccCeEEEEEcCCcceEE-Ee---cCccceEEEEeCC-CCCEEEEEeCCCcEEEEEE
Q 014977 172 ANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGLNMIKL-IN---AHDSHIACFTLTL-DGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~~~~~~-~~---~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd 245 (415)
...+.-++|.- .+ ..+|+ .+.||.|++++++...-.+ +. ....+...++|++ |-+++|+-..|...|.|.|
T Consensus 196 DKEV~DIaf~~--~s~~~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 196 DKEVYDIAFLK--GSRDVFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred CcceeEEEecc--CccceEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 88555555554 33 34454 5589999997766533222 22 1256778899987 4568888877776699999
Q ss_pred CCCC-cEEEEEecCCCcccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977 246 TVDG-TRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
++.. .++.++++ |.+.|++++|.|. ...|+++++|..+.+||+...-.
T Consensus 273 iR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 273 IRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 9864 57788888 9999999999995 56899999999999999987643
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.2e-15 Score=132.96 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=146.8
Q ss_pred EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE-EccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeE
Q 014977 91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF-AFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~ 167 (415)
..++|+.++..+++++.| |++|||++.+...+... .|...|.++.|+||+++++ .....+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 567899999999999998 99999997776655554 4999999999999999998 333999999999977666
Q ss_pred EeccCCC--cceEEEecCCC--ceEEEEeCCccCeEEE-----EEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 168 IETLANL--RGLCCLSHHSS--TSVLACPGLQRGQVRI-----EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 168 ~~~~~~~--~~~~~~~~~~~--~~~l~~~g~~dg~v~i-----~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
....... ...+.|..++. ..++++.-..-+.|.. |.... -..++.......|.+++.+++|+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 5432222 23344444442 2233333333344444 33321 0112222334579999999999999999999
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
|. |.|++..+.+.++-++.. |...|+.+.|+||.+++++.+.|.++.|..+.-.+.
T Consensus 303 Gs-Vai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 303 GS-VAIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred Cc-EEEEEeceeeeeEeehhh-heeeeeeEEEcCCcCcccccccCCceeEEEEeeccc
Confidence 99 999999988888766644 888999999999999999999999999999887543
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=1.2e-14 Score=127.17 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=163.0
Q ss_pred ccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCcee-----EEEeccCCCeeEEEEeeeCC-eEEEEecCCCC
Q 014977 38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET-----FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNS 109 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~ 109 (415)
+...+|+++|..++|+|- ...+|+|+ |.+|.||.+...... ....+.+|...+--+.|+|. ...|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence 457899999999999995 45778888 999999998643321 12335588888888999985 4566777776
Q ss_pred CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+.|.+|++.+|+.+.++.|...|.++.|+.||.+++ .|.+|+|||.++++.+..-..|..... ...-+-.++
T Consensus 154 ----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g 228 (472)
T KOG0303|consen 154 ----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASG 228 (472)
T ss_pred ----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccC
Confidence 999999999999999999999999999999999998 799999999999999988766654333 223333445
Q ss_pred eEEEEeCC---ccCeEEEEEcCC--cc--eEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE-EEEEec
Q 014977 187 SVLACPGL---QRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR-LQEVRR 257 (415)
Q Consensus 187 ~~l~~~g~---~dg~v~i~~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~-~~~~~~ 257 (415)
. ++++|. .+..+-+|+... ++ ...+. ....|.---|.+|..+++.++ .|+. |+-|.+....+ ++-+..
T Consensus 229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT 305 (472)
T ss_pred c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence 4 555563 466777887654 12 22222 344555566788888776554 5788 99999876553 333332
Q ss_pred CCCcccEEEEEeCCC
Q 014977 258 GVDRAEIYSIALSPN 272 (415)
Q Consensus 258 ~~~~~~v~~l~~spd 272 (415)
.....+-..+.|-|.
T Consensus 306 f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 306 FSSKEPQRGMGFMPK 320 (472)
T ss_pred cccCCcccccccccc
Confidence 213345677777774
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=4.8e-16 Score=147.37 Aligned_cols=290 Identities=13% Similarity=0.164 Sum_probs=198.2
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|..+|+|+.|...|.++++|+ |..++||.+++..+... ..+|...+..++.+.+...+++++.| ..|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n~~iaaaS~D-----~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNNTMIAAASND-----KVI 256 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhhhhhhhcccC-----ceE
Confidence 34578999999999999999999999 88999999988665443 56899999999999999999999988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++|.+.++.++..+. |.+.|++++|+|-. --..||++++||.+ .......... .....+..+.+...+.-++ +
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-T 333 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-T 333 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc-c
Confidence 999999999999887 99999999999964 11179999999976 1111111000 0001122222222222233 3
Q ss_pred CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
|+.|+.-..|.... +..+...+.-+.++.+- .+.+++-.+-. +++|++.+|..++.+.+ |...+..|.++|
T Consensus 334 gs~d~ea~n~e~~~-----l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQ-----LAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHP 405 (1113)
T ss_pred ccCCcccccchhhH-----hhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecC
Confidence 56666555543221 11111111112222221 35556666666 99999999999988888 777889999999
Q ss_pred CCCE-EEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 272 NVQW-LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 272 dg~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
-... ..+++.||...|||+-.+-+.+ .|+
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik----------------------------------------------~y~---- 435 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIK----------------------------------------------HYF---- 435 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcce----------------------------------------------eee----
Confidence 5554 4589999999999999887542 111
Q ss_pred ceEEEEeCCCceEEEEecCCCEEEEEEeC-CcEEEEEEecCCCCcEEEeeeeec
Q 014977 351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMD-GSFYRCSFDPVHGGEMLQQEYVRF 403 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~ 403 (415)
.+..-...+.|+++++-++.+.| |.+||......+. .....+.+|
T Consensus 436 ------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s--~k~ak~dqf 481 (1113)
T KOG0644|consen 436 ------IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS--QKKAKYDQF 481 (1113)
T ss_pred ------cccceeeccccCCCCceEecCCCCCceEEeccCCCcc--ccccccceE
Confidence 22233445789999666666664 9999988766332 333445554
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=6.9e-15 Score=133.27 Aligned_cols=264 Identities=13% Similarity=0.133 Sum_probs=177.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEE-ccCCceeEEEeccCCCeeEEEE-ee------eCCeEEEEecCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYN-CEPFKETFRRDLKSGGFRIVEM-LF------RCNILALVGAGDNSQY 111 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~-~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~l~s~~~d~~~ 111 (415)
...|...|.++.|+.+...+.+++|..+.+|. +.+... ....+...-.. ..+ .+ ......++.++.|
T Consensus 10 k~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~p-t~~h~~~rs~~~g~~~d~~~i~s~D--- 84 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVP-TDMHLGGRSSGGGKGSDTLLICSND--- 84 (737)
T ss_pred ccccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCC-ccccccccccCCCCCcceEEEEcCC---
Confidence 34677888899999998888888877666654 432211 11111011000 001 11 1122334444444
Q ss_pred CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
|.+.+.+ +.++..+.+. |.+.+.+-.|+|||.-++ .||.|++|. ++|-...++.....++.+.++. |+..
T Consensus 85 --Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~--p~S~ 158 (737)
T KOG1524|consen 85 --GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA--PNSN 158 (737)
T ss_pred --ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC--CCCC
Confidence 8888887 6666666666 999999999999998777 799999999 4554444444344444444444 4444
Q ss_pred EEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 188 VLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
.++++ ..+.+.|-.. ....+...++|++-|.++.|++...++++|++|-. .+|||. -|..+..-.. |+-+|++
T Consensus 159 ~vl~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITS 232 (737)
T KOG1524|consen 159 SIVFC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITS 232 (737)
T ss_pred ceEEe--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceee
Confidence 45553 3567887433 34556778999999999999999999999999999 999996 6777755555 7789999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
++|.|| +.++.++.. +++ +++...
T Consensus 233 va~npd-~~~~v~S~n-t~R---~~~p~~--------------------------------------------------- 256 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TAR---FSSPRV--------------------------------------------------- 256 (737)
T ss_pred eeeccc-cceeeeeee-eee---ecCCCc---------------------------------------------------
Confidence 999999 666666643 344 222221
Q ss_pred ccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+....++|+++ .++.++++.|.+.+.-+-+
T Consensus 257 -------------GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 257 -------------GSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred -------------cceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 45566899999 8899999999887754443
No 180
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=4.2e-16 Score=138.81 Aligned_cols=225 Identities=15% Similarity=0.133 Sum_probs=180.7
Q ss_pred ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~ 124 (415)
.-+.+.++.+|++|+.|+ .|.+..+|+.+....++.. -...|.++.|-.+..+++.+-. +.+.||| ..|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-~~G 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---VMETVRDVTFLHNEQFFAVAQK------KYVYVYD-NNG 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee---hhhhhhhhhhhcchHHHHhhhh------ceEEEec-CCC
Confidence 357889999999999999 9999999999877665543 3445666777777777777665 7999999 888
Q ss_pred CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977 125 RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 125 ~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
..+..++....|..+.|.|...+++ ..|.++.-|+.+|+.+..+....... ..+..+|-+..+ ..|..+|+|.+
T Consensus 201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~--~vm~qNP~NaVi-h~GhsnGtVSl 277 (545)
T KOG1272|consen 201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT--DVMKQNPYNAVI-HLGHSNGTVSL 277 (545)
T ss_pred cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc--chhhcCCccceE-EEcCCCceEEe
Confidence 8888888788999999999988888 67899999999999999887766643 445555555454 45889999999
Q ss_pred EEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977 202 EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 202 ~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (415)
|..+. .++..+..|.++|.+|++.++|+|+++.+.|.. ++|||++....+.++.. ..+...++||..| +|| .+
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA-~~ 351 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLA-LS 351 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-cee-ee
Confidence 98775 556778899999999999999999999999999 99999998887777664 2356788888765 344 44
Q ss_pred CCCeEEEEE
Q 014977 281 DKGTVHIFS 289 (415)
Q Consensus 281 ~dg~i~vwd 289 (415)
....|.||.
T Consensus 352 ~G~~v~iw~ 360 (545)
T KOG1272|consen 352 YGDHVQIWK 360 (545)
T ss_pred cCCeeeeeh
Confidence 445699996
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.6e-14 Score=137.74 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=149.0
Q ss_pred CcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCE--EEE-----EEccCce
Q 014977 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE-----FAFRSDV 136 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~-----~~~~~~i 136 (415)
+.+.||++... ......+ .....+.++.|+| +..++++|..+ |.|.+||+..+.. ... ..|..++
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 35889999864 2233334 5677788999998 45677777776 9999999887654 222 2388999
Q ss_pred eEEEEcCCeE---EEE--eCCeEEEEEcCCcee-eeEE----ecc-----CCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977 137 RSVKLSRDRI---VVV--LEHKIYVYSFVDLKL-LHQI----ETL-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 137 ~~l~~~~~~~---~~~--~d~~i~iwd~~~~~~-~~~~----~~~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
..+.|..+.. ++. .||.|..|+++.... .... ..| .......++.+.+........|++.|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9999975422 232 899999999854322 1111 110 112233344443332222334889999987
Q ss_pred -EEcC--Ccc------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCC
Q 014977 202 -EHFG--LNM------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 202 -~~~~--~~~------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
.... ... ...+..|.++|+++.++|=+..++..+.|.+ ++||... ...++..+.. +...|++++|||
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSp 451 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSP 451 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcC
Confidence 3222 222 3355678999999999997765554444888 9999977 5667766666 566799999999
Q ss_pred CCC-EEEEEeCCCeEEEEEceecccC
Q 014977 272 NVQ-WLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 272 dg~-~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
-.. .++++..||.|.+||+......
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred cCceEEEEEcCCCceehhhhhccccC
Confidence 654 6778888999999999887654
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=7.9e-15 Score=123.30 Aligned_cols=197 Identities=9% Similarity=0.130 Sum_probs=148.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~ 115 (415)
.+-+.|.|+.|.|++..+++-.++.|.+|+++....+..... ..+.....+-.|+| ++..+++.++ ++
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------~t 194 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------ST 194 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------Cc
Confidence 556689999999999999998899999999987655322111 12234455556776 6777777665 89
Q ss_pred EEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceE
Q 014977 116 VIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+..||+++.+....+. |...|.++.|+|+.+.++ .|+.|++||.+. ..+++.+.+|.+ .+.++.+++....
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdq 272 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQ 272 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecCccce
Confidence 9999999988888887 899999999999988776 699999999964 457788888888 4555555554445
Q ss_pred EEEeCCccCeEEEEEcCC------------------------------cceEEEecCccceEEEEeCCCC-CEEEEEeCC
Q 014977 189 LACPGLQRGQVRIEHFGL------------------------------NMIKLINAHDSHIACFTLTLDG-LLLATASTR 237 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~------------------------------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~d 237 (415)
|+.+|+.|..|.++.... ..+.++..|...|++++|+.-. =++|+-+.|
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 555688888888864321 2234667899999999998744 467889999
Q ss_pred CcEEEEEECC
Q 014977 238 GTLIRIFNTV 247 (415)
Q Consensus 238 g~~I~vwd~~ 247 (415)
|. +.|=.+.
T Consensus 353 GR-viIs~V~ 361 (370)
T KOG1007|consen 353 GR-VIISSVP 361 (370)
T ss_pred ce-EEeecCC
Confidence 99 7776553
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.4e-14 Score=138.20 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=187.5
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-cCCCeeEEEEeee--CCeEEEEecCCCCCCCCCeEEEEE
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.+-..+.|+|-...++++. ...|+|||.+.....-.... ......|..+.+- .+..++.+++.| |.|+||+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIwk 1139 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIWK 1139 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEec
Confidence 3566788999888999988 77899999987655332221 0123445555544 355677777777 9999998
Q ss_pred C-CC----CCEEEEEE-c-------cCceeEEEEcCC-eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977 121 D-HQ----SRCIGEFA-F-------RSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 121 ~-~~----~~~~~~~~-~-------~~~i~~l~~~~~-~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (415)
- .+ .+.+.-.. . .+.=.-+.|... |.+++ .-..|+|||....+.+..+..... ..+.+++.+-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccc
Confidence 3 22 22332222 0 011122445543 44444 346799999988777777654432 2455666654
Q ss_pred Cc-eEEEEeCCccCeEEEEEcCCc----ceEEEecCccc--eEEEEeCCCCCE-EEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 185 ST-SVLACPGLQRGQVRIEHFGLN----MIKLINAHDSH--IACFTLTLDGLL-LATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 185 ~~-~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~--i~~l~~sp~g~~-l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+ ..++ +|..||.|++++.+.. .+...+.|... |..+.+.+.|-- |++|+.||. |++||++.......+.
T Consensus 1219 ~~gn~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1219 VHGNIIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cCCceEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccce
Confidence 43 4555 5999999999887753 45667788877 999999987754 999999999 9999998743222222
Q ss_pred cCCC---cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977 257 RGVD---RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS 333 (415)
Q Consensus 257 ~~~~---~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (415)
...| .+..+++..+++...+|+|+. +.|+||++...+-..
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~------------------------------------ 1339 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI------------------------------------ 1339 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc------------------------------------
Confidence 1111 225899999999999999998 899999998665331
Q ss_pred cccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+.+.+.++.. ..+...+++|+|. -.+++|..|..|-||..++
T Consensus 1340 -~k~n~~F~~q-------------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQ-------------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred -cccCcccccC-------------cCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 0111111110 0134578899998 5556666689999998776
No 184
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=6.8e-15 Score=130.91 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=167.8
Q ss_pred ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....|..+|.++.|+|.. ..+.+.+ ||+|++-|++.........+.........+.|+.+...++.++.- |.
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-----G~ 302 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-----GN 302 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-----cc
Confidence 4467899999999999955 4555555 999999999864332222233456667777887766655555554 89
Q ss_pred EEEEECCCCCE-EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee----EEeccCCCcceEEEecCCC
Q 014977 116 VIIWDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 116 i~vwd~~~~~~-~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 185 (415)
+.+||+++++. ...+. |...|..++++|-...++ .|++++|||++...... ....|...+....|+|+.
T Consensus 303 f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~- 381 (498)
T KOG4328|consen 303 FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG- 381 (498)
T ss_pred eEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-
Confidence 99999988765 44444 888999999999776655 79999999997543222 223456655555566554
Q ss_pred ceEEEEeCCccCeEEEEEcC----C-cceEEEecCc----c--ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 186 TSVLACPGLQRGQVRIEHFG----L-NMIKLINAHD----S--HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~----~-~~~~~~~~~~----~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
..|+++ +.|..|+||+.. . .+...+. |. . ......|.|+-.++++|..-.. |-|+|-..++.+..
T Consensus 382 -gtl~TT-~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 382 -GTLLTT-CQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMVCE 457 (498)
T ss_pred -CceEee-ccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEeee
Confidence 446664 589999998873 2 2222222 22 1 2235679999999999999999 99999888887877
Q ss_pred EecCCCcccEEE-EEeCCCCC-EEEEEeCCCeEEEEEce
Q 014977 255 VRRGVDRAEIYS-IALSPNVQ-WLAVASDKGTVHIFSLR 291 (415)
Q Consensus 255 ~~~~~~~~~v~~-l~~spdg~-~l~s~s~dg~i~vwd~~ 291 (415)
+... ....|.+ ..|+|-+. +++.++..|.|+||--+
T Consensus 458 l~~P-~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 458 LHDP-ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCc-cccccccceeecccccceeccCCccceEEEEecC
Confidence 7654 2223443 47999887 44455566788888543
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=5.3e-15 Score=134.04 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=161.5
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD 135 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~ 135 (415)
.|+.++ ||.+.|.+-.. . .+.....|...+.+-.|+++|.-|++.+.| |.|++|. ++|....++. ...+
T Consensus 77 ~~~i~s~DGkf~il~k~~--r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA--R-VERSISAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred eEEEEcCCceEEEecccc--h-hhhhhhhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence 455555 99988876442 1 223344788888999999999999999998 9999999 6666555544 7889
Q ss_pred eeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977 136 VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN 213 (415)
Q Consensus 136 i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~ 213 (415)
|+|++|.|+...++ ..+.+.|=.+.-...+-..+.|.. -+.++.|++...++++ |++|-..++|+..+..+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIAS-GGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc--EEEEeecCccccceee-cCCceeEEeecccCcccccCC
Confidence 99999999877666 788899888877666667788877 6788888888878776 779999999999999999999
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw 288 (415)
.|+.+|++++|+|+ +.++.++.+ + ++ +... ..+.|..++||+||..++.|+..|.+.+=
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence 99999999999999 666666644 2 44 3222 45689999999999999999999976553
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=2.1e-14 Score=125.60 Aligned_cols=221 Identities=12% Similarity=0.127 Sum_probs=144.6
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--------cceEEEecCccceEEEEeCCCC-CEEEEEeCCC
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLDG-LLLATASTRG 238 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg 238 (415)
+.+|..++ +.+.|+|.+...+++|++|.+|.||.... +++..+.+|...|.-++|+|.. +.|++++.|.
T Consensus 77 v~GHt~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 45666644 44455544445566799999999998653 5678899999999999999965 4788999999
Q ss_pred cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCC
Q 014977 239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSS 318 (415)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (415)
. |.+||+.+|+.+.++. |..-|.++.|+.||.+|++.+.|..|+|||.++++...+...| .+.
T Consensus 155 ~-v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-------------eG~ 217 (472)
T KOG0303|consen 155 T-VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-------------EGA 217 (472)
T ss_pred e-EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-------------cCC
Confidence 9 9999999999988877 8889999999999999999999999999999999865433222 111
Q ss_pred Cc-ccCCCCCCCCCCCcccccccccCccccc---ccceEEEEeCCCceE-EEEecCC-CEEEEEEe-CCcEEEEEEecCC
Q 014977 319 FD-TLISPSTGANPGSSLSFMRGVLPKYFSS---EWSFAQFHIPEVTHF-IAAFGSQ-NTVVIVSM-DGSFYRCSFDPVH 391 (415)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~-~~i~~~~~-dg~~~~~~~~~~~ 391 (415)
+. +.+=...|.-..+.++-+..-+..+|+. +..+....++.+.-. .-.|-++ +.|+.+|. ||.|+.|.+..+.
T Consensus 218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 11 1111122222222233332222222222 223334444432222 3345666 55555555 9999999997643
Q ss_pred CCcEEEeeeeecccCCCCCc
Q 014977 392 GGEMLQQEYVRFLKTVSRPR 411 (415)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~ 411 (415)
. ...|.+-...-+++|
T Consensus 298 P----~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 298 P----FVHYLNTFSSKEPQR 313 (472)
T ss_pred c----eeEEecccccCCccc
Confidence 2 233444444445555
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=9e-15 Score=125.69 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=156.7
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-- 131 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-- 131 (415)
..+|++. .|.|++||..+++.+.. +..+...+..+.|.. ....+.+++.| |+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheecc
Confidence 4567666 99999999998554433 445555566666655 55677778877 999999998876655554
Q ss_pred -cc-CceeEEEEcCCeEEEE-------eCCeEEEEEcCCcee-eeEE-eccCCCcceEEEecCCCceEEEEeCCccCeEE
Q 014977 132 -FR-SDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKL-LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200 (415)
Q Consensus 132 -~~-~~i~~l~~~~~~~~~~-------~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~ 200 (415)
+. .+..+++.+-.+.+++ .+-.+.+||++..+. +..+ ..|...++.++|+|+..+ ++.+|+.||.|.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn--lLlSGSvDGLvn 191 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN--LLLSGSVDGLVN 191 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC--eEEeecccceEE
Confidence 22 4667777775666665 477899999987665 5554 678887777777776544 334699999999
Q ss_pred EEEcCCc----ceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEE-----------------------
Q 014977 201 IEHFGLN----MIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRL----------------------- 252 (415)
Q Consensus 201 i~~~~~~----~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~----------------------- 252 (415)
+++.... .+...-.|...|..+.|..++ +.|.+-+.... ..+|+++.+...
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 9877653 222333567778888888777 34777777777 888887653211
Q ss_pred --------------------------------------EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 253 --------------------------------------QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 253 --------------------------------------~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
..+.+ .|...|+++.|...+.++.+|++||.+.+|..+.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 01111 1344556667777778999999999999999743
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=9.5e-15 Score=124.67 Aligned_cols=236 Identities=13% Similarity=0.160 Sum_probs=169.4
Q ss_pred CCceEEEEEe-------CCCCEEEEEe-CCcEEEEEccCCceeEEEecc---CCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 44 EIELISVSWN-------QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 44 ~~~V~~l~~s-------p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...|+..+|- |+..++|+.+ +.-|++||.-+++.......- ..-....++.|++||..|..|-.
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----- 178 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----- 178 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----
Confidence 4567777775 6677888888 999999999886654432221 22345678999999999988776
Q ss_pred CCeEEEEEC-CCCCEEEEE---E-----ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEE
Q 014977 113 PTKVIIWDD-HQSRCIGEF---A-----FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC 179 (415)
Q Consensus 113 ~~~i~vwd~-~~~~~~~~~---~-----~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 179 (415)
..|+++|+ +.|..-..+ . ..+-|.+++|+|-.. .++ ....+-||.-..+.++..+-+|.. .+..
T Consensus 179 -rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g--GvTh 255 (406)
T KOG2919|consen 179 -RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG--GVTH 255 (406)
T ss_pred -ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC--Ceee
Confidence 89999998 555432222 1 267788999999654 444 456677777678888888888887 5555
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCcc-ceEEEE--eCCCCCEEEEEeCCCcEEEEEECCC-CcEEE
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDS-HIACFT--LTLDGLLLATASTRGTLIRIFNTVD-GTRLQ 253 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~-~i~~l~--~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~ 253 (415)
+.+.++|..|.+.+..+..|..|+++. .++..+..|.. .-..|. ..|+|++|++|+.||. |++||+++ |..+.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEVS 334 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCccc
Confidence 566666667766555677788899875 44556666655 333444 4689999999999999 99999988 66666
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.+.. +...++.++++|--.++|+++.. ++|...+.
T Consensus 335 v~~~--~sd~vNgvslnP~mpilatssGq---r~f~~~~d 369 (406)
T KOG2919|consen 335 VTGN--YSDTVNGVSLNPIMPILATSSGQ---RIFKYPKD 369 (406)
T ss_pred cccc--ccccccceecCcccceeeeccCc---eeecCCCc
Confidence 6665 77789999999997778777654 44444443
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.4e-13 Score=130.36 Aligned_cols=235 Identities=13% Similarity=0.151 Sum_probs=170.1
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe---EEEEecCCCCCCCCCeEEEEECCC
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI---LALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
-....|++|++.++...+..|.||...++..+. .++++...+..+.+.+.. .++.+++.+ |.|++||...
T Consensus 19 ~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~ 91 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSD 91 (792)
T ss_pred ecccccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecC-----ccEEEecCCC
Confidence 344568999999999999999999999876654 455777777777766532 566677776 9999999988
Q ss_pred CCEEEEEEccCceeEE-----------------------------------------------------------EEcCC
Q 014977 124 SRCIGEFAFRSDVRSV-----------------------------------------------------------KLSRD 144 (415)
Q Consensus 124 ~~~~~~~~~~~~i~~l-----------------------------------------------------------~~~~~ 144 (415)
+..++++....++..+ .+++.
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 8887776532222222 22222
Q ss_pred eEEEE--eCCeEEEEEcCCceee-eEE---eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-----cceEEEe
Q 014977 145 RIVVV--LEHKIYVYSFVDLKLL-HQI---ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-----NMIKLIN 213 (415)
Q Consensus 145 ~~~~~--~d~~i~iwd~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-----~~~~~~~ 213 (415)
+.+.. .+..+++|........ ... ..|.. .+.+.+.+|.+.++|+ |..||.|.+|..-+ ...+.+.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf--~~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTF--NITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcc--cceeEEeccccceEEE-eccCCcEEEEeccccccccccceEEE
Confidence 22222 4556667776553311 001 11222 2455566667778876 77899999986544 3456778
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
-|...|++++|+++|.+|++|+..+. +.+|.+.+++ .+-+.. -.++|..+.+|||+.+.+....|+.|.+-...+-
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ecccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 89999999999999999999999999 9999999988 334554 6679999999999999999999999999988665
Q ss_pred cc
Q 014977 294 VV 295 (415)
Q Consensus 294 ~~ 295 (415)
+.
T Consensus 325 ~~ 326 (792)
T KOG1963|consen 325 EI 326 (792)
T ss_pred hh
Confidence 53
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=4.1e-12 Score=120.61 Aligned_cols=238 Identities=20% Similarity=0.325 Sum_probs=180.3
Q ss_pred CceEEEEE-eCCCC-EEEE-Ee-CCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCeEEEEecCC-CCCCCCCeEEE
Q 014977 45 IELISVSW-NQDYG-CFAA-GT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVII 118 (415)
Q Consensus 45 ~~V~~l~~-sp~g~-~la~-g~-d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~~~~i~v 118 (415)
..+..+.+ ++++. .++. +. ++.+.+|+... ...... +..+...+..+.|++++..++.++. + +.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~ 182 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLD-----GTIKL 182 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--EecCcccEEEEEECCCCCEEEecCCCC-----CceEE
Confidence 46777777 78887 4444 34 88999999986 333333 3367777889999999977777764 5 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeee-EEeccCCCcceEEEecCCCceEEEEe
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
|++..+..+..+. |...+.+++|+|++. .++ .|+.|++||...+..+. .+..|.... +..+.++ +.+++ +
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~ 258 (466)
T COG2319 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD--GSLLA-S 258 (466)
T ss_pred EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC--CCEEE-E
Confidence 9999888888887 799999999999986 444 68999999988777777 577776644 4445554 44555 4
Q ss_pred CCccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 193 GLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
++.++.+++|+..... ...+..|...+.++.|+|++..+++++.|+. +.+||..+...........|...+..+.|.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 7799999998876433 3444678899999999998888888999988 999999888776666511155578999994
Q ss_pred CCCCEEEEE-eCCCeEEEEEceecc
Q 014977 271 PNVQWLAVA-SDKGTVHIFSLRVRV 294 (415)
Q Consensus 271 pdg~~l~s~-s~dg~i~vwd~~~~~ 294 (415)
+++..++.+ ..|+.+.+|++....
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCCc
Confidence 343556555 678899999988776
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.5e-13 Score=110.26 Aligned_cols=227 Identities=11% Similarity=0.137 Sum_probs=157.7
Q ss_pred ceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
.|.+-+++|.+++|++|. +|.|.+..+... .+.....++.|...+..+.|..+ +|.++++ |.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gd------G~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGD------GLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccC------ceE
Confidence 366678999999999999 999999988531 22222334678888999999843 3445554 899
Q ss_pred EEEECCCCC------EEEEEE--------ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEE
Q 014977 117 IIWDDHQSR------CIGEFA--------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC 179 (415)
Q Consensus 117 ~vwd~~~~~------~~~~~~--------~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 179 (415)
+-|...... .+.+.. .-..|++|.+.|...-++ .|+.++-||+++|+...++.+|.+.+..+.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 998864422 122221 124688899987654433 799999999999999999999998554443
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec---------C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA---------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~---------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
.. +..+. +. +|++||++++|+... +.+..+.. | ...|.+++. +..+|++|+.. . +.+|++++
T Consensus 164 ~R-~~~~q-il-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~-lslwhLrs 236 (325)
T KOG0649|consen 164 GR-NANGQ-IL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-K-LSLWHLRS 236 (325)
T ss_pred ec-ccCcc-ee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-c-eeEEeccC
Confidence 31 22333 33 589999999998765 44555432 2 234555655 44577776644 4 89999999
Q ss_pred CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
.++...|.- .+++..+.|.. ..+++++..+.|.-|.+..
T Consensus 237 se~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 237 SESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 999888874 55788899964 4566777777888888754
No 192
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.3e-13 Score=126.06 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=193.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
+.-+|...-+.|..+|||+++.+ |. .-.|++||+......+...+........ ..+.|...++--..| ..|
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fe--iLsDD~SK~v~L~~D-----R~I 118 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFE--ILSDDYSKSVFLQND-----RTI 118 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEE--EeccchhhheEeecC-----cee
Confidence 34567788899999999998765 55 8899999999877777766533322221 122333222222222 555
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcC-C-eEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSR-D-RIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~-~-~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
.+.. .+..-..+..+..-.+|+++. . ..+++ ....|+-++++.|+-+..+......+.++.+.. -+.+|++ |
T Consensus 119 efHa--k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~--~hgLla~-G 193 (703)
T KOG2321|consen 119 EFHA--KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE--EHGLLAC-G 193 (703)
T ss_pred eehh--hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC--ccceEEe-c
Confidence 4433 122222233344445566653 2 23333 778899999999999999887776556665554 4456665 8
Q ss_pred CccCeEEEEEcCCcc-eEEE------ecCcc-----ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977 194 LQRGQVRIEHFGLNM-IKLI------NAHDS-----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~-~~~~------~~~~~-----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (415)
..+|.|..|+.+.+. +..+ ..|.+ .|+++.|+.+|-.+++|..+|. +.|||+++.+++.. +.+...
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~-kdh~~e 271 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLV-KDHGYE 271 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceee-cccCCc
Confidence 899999999977543 2222 22333 3999999999999999999999 99999999988744 343355
Q ss_pred ccEEEEEeCCC--CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977 262 AEIYSIALSPN--VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (415)
Q Consensus 262 ~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
-+|..+.|.+. +..|++. +...++|||-.+|+...
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a------------------------------------------ 308 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA------------------------------------------ 308 (703)
T ss_pred cceeeecccccCCCceEEec-chHHhhhcccccCCcee------------------------------------------
Confidence 68999999775 3444443 45679999999988541
Q ss_pred cccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCCC
Q 014977 340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVS 408 (415)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (415)
.+....+...+|.+...+.++++-.++.+..|-++.. |.. ..|.+|+++..
T Consensus 309 --------------siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L--GPa--PrWCSfLdnlT 359 (703)
T KOG2321|consen 309 --------------SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL--GPA--PRWCSFLDNLT 359 (703)
T ss_pred --------------eccccCCcCceeeecCCceEEEecCCCcceeEEcccc--CCC--chhhhHHHhHH
Confidence 1111112223344444488888888899999988873 333 46899988743
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=5.2e-14 Score=120.49 Aligned_cols=236 Identities=14% Similarity=0.121 Sum_probs=153.0
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~ 128 (415)
-++|||+|+++|+.++-.+.|-|.++.+..... ..-..+..+.|..+..++..+. |.++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf---~cldki~yieW~ads~~ilC~~----yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLF---LCLDKIVYIEWKADSCHILCVA----YKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHH---HHHHHhhheeeeccceeeeeee----eccceEEEEEeecceeEE
Confidence 468999999999999778888888875532211 1122345566666665544432 234899999999988888
Q ss_pred EEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc--------
Q 014977 129 EFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------- 195 (415)
Q Consensus 129 ~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------- 195 (415)
.+. ....+..++|+|||+.+. .+-.|.+|.+.+.+....- -... .+-.+++++++++.+.....
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT--NVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc--CceeEEECCCCceeeeeecccHHHHHHH
Confidence 887 678899999999998777 5789999999876654322 2222 23445555566665543221
Q ss_pred --------------------------cC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 196 --------------------------RG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 196 --------------------------dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
|| .+.+|+.-.+.......-.-.+..++|+|.+++|++|+.|+. ++|.+--+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceee
Confidence 12 222244332222222223457889999999999999999998 88754322
Q ss_pred Cc------------------------------------------------------------EEEEEec----CCCcccE
Q 014977 249 GT------------------------------------------------------------RLQEVRR----GVDRAEI 264 (415)
Q Consensus 249 ~~------------------------------------------------------------~~~~~~~----~~~~~~v 264 (415)
.+ .+..++. ......+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 10 0111110 0012346
Q ss_pred EEEEeCCCCCEEEEEeCC--CeEEEEEceeccc
Q 014977 265 YSIALSPNVQWLAVASDK--GTVHIFSLRVRVV 295 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~d--g~i~vwd~~~~~~ 295 (415)
.-++|++|..++++-.+. +.+.+||+++.+-
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence 678999999999987653 5799999998763
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=119.96 Aligned_cols=240 Identities=12% Similarity=0.148 Sum_probs=169.2
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYS 158 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd 158 (415)
++.+...+.++.|..+..+ .++... |.|++|++.+...+..++ +...|+.+..-|++.+.. .|..+.+|+
T Consensus 10 LRp~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT 83 (323)
T ss_pred eccccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence 3477888889999988874 444544 999999999988777777 678899999999876666 788888888
Q ss_pred cCCceeeeE-------------------------EeccC--------------------------CCcceEEEe--cCCC
Q 014977 159 FVDLKLLHQ-------------------------IETLA--------------------------NLRGLCCLS--HHSS 185 (415)
Q Consensus 159 ~~~~~~~~~-------------------------~~~~~--------------------------~~~~~~~~~--~~~~ 185 (415)
+.-+..+.. +.-+. ....++++. ....
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 743211100 00000 000122322 2222
Q ss_pred ceEEEEeCCccCeEEEEEcCCc-----------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cE-
Q 014977 186 TSVLACPGLQRGQVRIEHFGLN-----------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TR- 251 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~~-----------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~- 251 (415)
..+++.+|.++|.|.+|+.+.+ .+.....|..++.++.+.+.-..=++|+.+.. +..|.+... ..
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQ 242 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCccc
Confidence 3456667999999999998873 33344578999999999876555677777777 888887543 21
Q ss_pred -EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977 252 -LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN 330 (415)
Q Consensus 252 -~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (415)
..++.. ....|..+.+-||++.+|+++.|+.|+||..++......
T Consensus 243 ~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV-------------------------------- 288 (323)
T KOG0322|consen 243 IRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV-------------------------------- 288 (323)
T ss_pred ccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh--------------------------------
Confidence 112222 223588899999999999999999999999999875421
Q ss_pred CCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
.+.....++.++|+++ +.+++++.|+.|-.|++
T Consensus 289 ------------------------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 ------------------------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------------------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1222356778999999 88888888999999986
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=2.6e-15 Score=133.81 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=169.1
Q ss_pred CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCcee
Q 014977 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL 164 (415)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~ 164 (415)
..+...+.|..+|..++.++.. |.|..+|+.+++...++.....|.++.|-.+..+++ ....++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence 3445677889999988888887 999999999999999999899999999999888887 789999999 56777
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
++.+..+. .+..+.+-|...+|+ +++..|.++. +...++.+..+....+.+..++-+|-...+-+|..+|+ |.+
T Consensus 203 lHClk~~~---~v~rLeFLPyHfLL~-~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl 277 (545)
T KOG1272|consen 203 LHCLKRHI---RVARLEFLPYHFLLV-AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL 277 (545)
T ss_pred EeehhhcC---chhhhcccchhheee-ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence 77777655 455566666555555 4778899888 66777888888888899999999999999999999999 999
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|...+.+++..+.. |.++|.+|++.++|+|+|+.+.|..++|||++.-...
T Consensus 278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 99998888877777 8999999999999999999999999999999987744
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.6e-14 Score=122.06 Aligned_cols=184 Identities=11% Similarity=0.164 Sum_probs=137.5
Q ss_pred eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCc-cceEEEEeC
Q 014977 150 LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHD-SHIACFTLT 225 (415)
Q Consensus 150 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~-~~i~~l~~s 225 (415)
..|.|++||..+++.+..++++......+.|.-... ...+.+++.||+|++|+.+.. .......+. .+..+++.+
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds-~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS-PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCC-CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 799999999999999999998887677777766432 233445789999999998753 233444554 567788877
Q ss_pred CCCCEEEEEeC----CCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCC
Q 014977 226 LDGLLLATAST----RGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDS 299 (415)
Q Consensus 226 p~g~~l~s~s~----dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~ 299 (415)
-.++.+++|.+ +-. |.+||++..+. +..+... |...|+++.|+| +..+|++|+.||-|.|||++.......
T Consensus 127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa- 203 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA- 203 (376)
T ss_pred CcCCeEEeccccccCceE-EEEEEeccccchhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-
Confidence 78888888764 455 99999998876 6555543 788999999999 557999999999999999987743210
Q ss_pred CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEE
Q 014977 300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVS 377 (415)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~ 377 (415)
|-..+ .. ...+..++|..+ .+|.+.+
T Consensus 204 ------------------------------------------L~~vi---------N~-~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 204 ------------------------------------------LLHVI---------NH-GSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred ------------------------------------------HHHhh---------cc-cceeeeeeeecCCcceEEEEE
Confidence 00011 10 123456889888 5999999
Q ss_pred eCCcEEEEEEec
Q 014977 378 MDGSFYRCSFDP 389 (415)
Q Consensus 378 ~dg~~~~~~~~~ 389 (415)
..+.+++|++..
T Consensus 232 H~Etf~~~ele~ 243 (376)
T KOG1188|consen 232 HMETFAIYELED 243 (376)
T ss_pred ccCceeEEEccC
Confidence 999999999976
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.4e-13 Score=131.53 Aligned_cols=215 Identities=11% Similarity=0.049 Sum_probs=143.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-C---CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~ 113 (415)
....|...+.+++|+|||+.|+..+ + ..|.+||+.+.+......+.++ .....|+|++..++.+. .+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~----- 269 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKD----- 269 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecC-----
Confidence 3456778899999999999999876 3 3599999987554333333222 33578999987666543 34
Q ss_pred Ce--EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCc
Q 014977 114 TK--VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 114 ~~--i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+. |.+||+.+++......+...+....|+||+..++ .++...||++.. +.....+ .+.. ....++|++
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG 344 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADG 344 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCC
Confidence 54 4555776666544434666788999999998766 356777777633 2222222 2221 234567778
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC--CCCcEEEEEecCCCcccE
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT--VDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~--~~~~~~~~~~~~~~~~~v 264 (415)
..+++.+ .++.+ +|+........+..+ .....+.|+|+|++|+.++.++. +.+|++ .+|+.+..+.. +.+.+
T Consensus 345 ~~ia~~~-~~~i~-~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~ 418 (429)
T PRK01742 345 KTLVMIN-GDNVV-KQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQV 418 (429)
T ss_pred CEEEEEc-CCCEE-EEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCC
Confidence 8887755 35444 455554433333322 23456789999999999999998 887775 36788888876 66778
Q ss_pred EEEEeCCC
Q 014977 265 YSIALSPN 272 (415)
Q Consensus 265 ~~l~~spd 272 (415)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 89999984
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.4e-13 Score=126.96 Aligned_cols=169 Identities=14% Similarity=0.034 Sum_probs=118.2
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeee--EEeccCCCcceEEEecCC
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLH--QIETLANLRGLCCLSHHS 184 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~ 184 (415)
..|.+||..... .+.+. +...+....|+|||+.++ . +..|++||+.+++... .+.++ .....++|
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-----~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-----NGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-----cCceeECC
Confidence 789999976555 34443 677899999999998887 1 2479999998875432 22222 22456677
Q ss_pred CceEEEEeCCccCeEEEE--EcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCC-cEEEEEecCCC
Q 014977 185 STSVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDG-TRLQEVRRGVD 260 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~-~~~~~~~~~~~ 260 (415)
++..|+++...+|.+.|| +........+..+...+....|+|||+.|+..+ .++. ..||++... .....+ . +
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~ 333 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--G 333 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--C
Confidence 787888766667876664 555566777777777888999999999777555 5677 888876432 222233 2 2
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.. ....|+|||++|+..+.++ +.+||+.+++.
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence 22 4578999999999888766 66699987753
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.9e-13 Score=115.61 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=150.2
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEE
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVY 157 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iw 157 (415)
.....+.+.+|+.+...++.+-.. ..|.||.....+ ...+++ |...|+.++|+|....|+ .|..-++|
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eccCceeeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 345568899999999988888776 899999976654 455665 899999999999987776 79999999
Q ss_pred Ec-CCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE-----EEecCccceEEEEeCCCCC
Q 014977 158 SF-VDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-----LINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 158 d~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-----~~~~~~~~i~~l~~sp~g~ 229 (415)
.. ..++- .-.+..+.. ...++.|+|....+|+ |+....|.|+-+..+.-- .-+.+.+.|.++.|+|++-
T Consensus 83 ~~~~~~~WkptlvLlRiNr--AAt~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINR--AATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ccCCCCeeccceeEEEecc--ceeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 98 44433 333333443 4556666666667776 777888888666654322 3345678899999999999
Q ss_pred EEEEEeCCCcEEEEEECC-----C-------------CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 230 LLATASTRGTLIRIFNTV-----D-------------GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~-----~-------------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+|++|+.|+. .+||... . |+++.++.. ..+.+..+.|+|+|..|+-.+.|.++.+=|-.
T Consensus 160 LlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 160 LLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred eecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 9999999999 9998642 1 233334432 45689999999999999999999999998877
Q ss_pred ecc
Q 014977 292 VRV 294 (415)
Q Consensus 292 ~~~ 294 (415)
.+.
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 665
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.3e-12 Score=106.13 Aligned_cols=234 Identities=12% Similarity=0.144 Sum_probs=159.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce------eEEEecc-----CCCeeEEEEeeeCCeEEEEecCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE------TFRRDLK-----SGGFRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~ 107 (415)
...+|+++|+.++|. ..+|++|+||.|+-|.+....+ ..+...+ ..-..|.+|...|...-+..++.
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred eccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 348899999999999 4588888899999998864332 1111111 11223556666664333333334
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEE-cCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCC--------c
Q 014977 108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKL-SRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL--------R 175 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~-~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~--------~ 175 (415)
| +.+.-||+++|+..++++ |...|.++.- +.+++++. .||++++||+++++.+..+....++ .
T Consensus 135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 4 999999999999999999 9999999998 66677776 8999999999999999888654332 2
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
.+.+++.+.+ ++++ | ....+.+|..+.........-..++..+.|..| .+++++..+. |.-|.+ .|.....+
T Consensus 210 wigala~~ed--WlvC-G-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~-v~~~~l-~Gvl~a~i 281 (325)
T KOG0649|consen 210 WIGALAVNED--WLVC-G-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNH-VQSYTL-NGVLQANI 281 (325)
T ss_pred eeEEEeccCc--eEEe-c-CCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccc-eeeeee-ccEEEEec
Confidence 4456666544 6766 3 345688898876554444445667777778543 5777777777 999976 56655555
Q ss_pred ecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977 256 RRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS 289 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd 289 (415)
... ....++..|+... ++|-.++....+.|+.
T Consensus 282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 282 PVE--STACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cCC--ccceeeecccCCceEEEEecccceeeeeee
Confidence 553 2245556565433 4555667777777763
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=3.6e-13 Score=122.40 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=142.1
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----eeEEEeccCCCeeEEEEe---eeCCeEEEEecCCCCCCCCCeEEE
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEML---FRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.+....++-.|++|+..-...+.+|+..... .+.+..+....-.+.++. -.+.+.-+..+-.. |.|.+
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~ 199 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL 199 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence 4555556667778877667778888876311 111122212222222221 12333333333222 88888
Q ss_pred EECCCCCEEEEEE-----ccCceeEEEEcCC--eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 119 WDDHQSRCIGEFA-----FRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 119 wd~~~~~~~~~~~-----~~~~i~~l~~~~~--~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
.|....+..+.+. .+..++++.|-|. +.+++ .+|.+++||..- .... ...++...+++..+
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~----t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGA----TAPSYQALKDGDQF 269 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccC----CCCcccccCCCCee
Confidence 8865533322222 3578999999874 44555 799999999611 0011 11122222222223
Q ss_pred EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+.--+. ......++..+..-.+.|+..+|+|||++||+.+.||. ++|||..+.+++..++. .-+...+++|
T Consensus 270 ~i~t~k------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW 340 (636)
T KOG2394|consen 270 AILTSK------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW 340 (636)
T ss_pred EEeeee------ccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence 221000 11122455555555679999999999999999999999 99999998888777665 5567999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
||||++|++|++|.-|.||.+...+..
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEE
Confidence 999999999999999999999887753
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.7e-14 Score=123.30 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=140.9
Q ss_pred EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
..++|+++|..|++|. ||.+|||++........ ...|+..|-++.|++|++++++-+. ...+||++.+|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~~~~~eV~DL~FS~dgk~lasig~------d~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--EIAHHAEVKDLDFSPDGKFLASIGA------DSARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--hHhhcCccccceeCCCCcEEEEecC------CceEEEEeccCch
Confidence 7899999999999999 99999999876555444 3378889999999999999999887 4899999999977
Q ss_pred EEEEE---ccCceeEEEEcCCe-----EEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 127 IGEFA---FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 127 ~~~~~---~~~~i~~l~~~~~~-----~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
+.... -+.....+.|+.|+ .+++ ..+.|..||+...+. +...+.-.....+.+++.+.+|+++|.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al- 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL- 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence 76665 24456677787766 2222 356677766632211 111111111125677888888999887
Q ss_pred CCccCeEEEEE-cCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977 193 GLQRGQVRIEH-FGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 193 g~~dg~v~i~~-~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
|+.||.|.|++ .+.+.++.. +.|...|+.+.|+|+.+++++.+.+.. +.|..+.
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEe
Confidence 78899999954 444554443 579999999999999999999888888 8887664
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.3e-14 Score=125.42 Aligned_cols=253 Identities=11% Similarity=0.100 Sum_probs=180.8
Q ss_pred CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYP 112 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~ 112 (415)
+.....+|.+.|..|.|+..|..|++|+ |..|.+||+......+...- +|...+....|-| +..-+++++.|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~d---- 208 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRD---- 208 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceecccc----
Confidence 3456789999999999999999999999 99999999988766655433 6777777766766 34667777777
Q ss_pred CCeEEEEECC-CCCEEEE---EEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEe--ccCC--CcceEEE
Q 014977 113 PTKVIIWDDH-QSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE--TLAN--LRGLCCL 180 (415)
Q Consensus 113 ~~~i~vwd~~-~~~~~~~---~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~--~~~~--~~~~~~~ 180 (415)
|.+++=.+. ++.+..+ .+|.++|.-++.-|+....+ .|+.+.-+|+++......+. .+.. .+....+
T Consensus 209 -gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 209 -GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred -CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 999988754 4443322 33899999999988766555 68889999997765443332 1222 2566777
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCCc-------ceEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGLN-------MIKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~-------~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
+.+|.+.+..++|+.|..+++++.+.- .+..+. ...-.|++++|+.++.-|.++-.|-. |+++.-.
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~ 366 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKS 366 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccc
Confidence 888877755556888999999765431 122222 22446899999987776666666777 9999533
Q ss_pred C--C----------cEEEE-EecCCCcccEEEEEe-CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 248 D--G----------TRLQE-VRRGVDRAEIYSIAL-SPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 248 ~--~----------~~~~~-~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
- | ..+.. ++++.....|..+-| -|...|+++|++=|.|.||+-.+++-
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 2 2 12223 667544557888765 58889999999999999999888763
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=4.3e-11 Score=104.44 Aligned_cols=231 Identities=12% Similarity=0.166 Sum_probs=162.1
Q ss_pred eEEEEEeCCCCEEEEEe-C--CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 47 LISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~-d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
|--+-|+ ..++|..+ + +.++++++.....+....+ ...+.++.++.+...++-. ..|.|||+++
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~Le--------e~IyIydI~~ 115 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCLE--------ESIYIYDIKD 115 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEEc--------ccEEEEeccc
Confidence 4444454 34666665 3 3488888877666666544 4457777777665554442 5699999999
Q ss_pred CCEEEEEE----ccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 124 SRCIGEFA----FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 124 ~~~~~~~~----~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
.+.+.++. +...+.++.+++.+.+++ ..|.|.+||+.+.+.+..+..|.. .+.+++++++|.+||+ ++
T Consensus 116 MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llAT-AS 192 (391)
T KOG2110|consen 116 MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLAT-AS 192 (391)
T ss_pred ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEE-ec
Confidence 99999887 345577777888888888 579999999999999999999988 5556666777888887 66
Q ss_pred ccCe-EEEEE-cCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--------------------
Q 014977 195 QRGQ-VRIEH-FGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-------------------- 250 (415)
Q Consensus 195 ~dg~-v~i~~-~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-------------------- 250 (415)
+.|+ |+++. .+++.+..++.. ...|.+++|+|++++|++.+..++ |+||.+..-.
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~ 271 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSKA 271 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhhh
Confidence 7776 56644 556777777643 346889999999999999999999 9999875311
Q ss_pred -----------------EEEEEecCCCcccEEEEEeC--CCCCEEEEEeCCCeEEEEEceeccc
Q 014977 251 -----------------RLQEVRRGVDRAEIYSIALS--PNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 251 -----------------~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.....+.. ..+.-..+.+. +...++..++.||.++.|.+.-.+.
T Consensus 272 ~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~g 334 (391)
T KOG2110|consen 272 ATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEG 334 (391)
T ss_pred hhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCC
Confidence 00000100 01111223333 4678899999999999999987543
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=3.6e-12 Score=126.21 Aligned_cols=254 Identities=11% Similarity=0.069 Sum_probs=167.0
Q ss_pred CCccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCce---e--EEEeccCCCeeEEEEeeeCCeEEEEecCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKE---T--FRRDLKSGGFRIVEMLFRCNILALVGAGDN 108 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 108 (415)
+.....+|...|..++.++.. .+|++|+ ||+|++|++..... . .+..+...+..+..+...+++..+|.++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 345678899999999988765 9999999 99999999864211 1 112222345556666666677777777777
Q ss_pred CCCCCCeEEEEECCCC--C-----EEEEEE--ccCceeEEE-EcCC-eE-EEE---eCCeEEEEEcCCceeeeEEeccCC
Q 014977 109 SQYPPTKVIIWDDHQS--R-----CIGEFA--FRSDVRSVK-LSRD-RI-VVV---LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~--~-----~~~~~~--~~~~i~~l~-~~~~-~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
|.|++.++... + ..+... ..+.+.+|. +... +. .++ ..+.|..||++.......++....
T Consensus 1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred -----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 99999997652 1 111111 234444443 3221 11 222 678899999988777666655444
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE-E-ecCccceEEEEeCCCC---CEEEEEe--CCCcEEEEEEC
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL-I-NAHDSHIACFTLTLDG---LLLATAS--TRGTLIRIFNT 246 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~-~-~~~~~~i~~l~~sp~g---~~l~s~s--~dg~~I~vwd~ 246 (415)
...+..+..++.+.+++. |...|.+.+||.+.+.... . ..+..+|..+..+|-. ...++++ ..+. |.+|++
T Consensus 1195 hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNM 1272 (1431)
T ss_pred ccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeec
Confidence 446777888888888876 8889999999998765332 2 2345778888777632 3444444 4667 999999
Q ss_pred CCCcEEEEEecCC-----------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 247 VDGTRLQEVRRGV-----------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 247 ~~~~~~~~~~~~~-----------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+|.+..++.... +.-......+..-+.++.+|+.|..|+.||....+..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9997766665420 0111222334444568889999999999999877643
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.8e-12 Score=122.35 Aligned_cols=214 Identities=11% Similarity=0.068 Sum_probs=141.7
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 145 (415)
.|.+||.+...... +..+...+....|+|++..++..+.. -....|.+|++.+++..........+..+.|+|||
T Consensus 180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 46777766533222 22455678889999999777653221 01268999999888765444455666778999999
Q ss_pred EEEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE--EcCCcceEEEecCcc
Q 014977 146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE--HFGLNMIKLINAHDS 217 (415)
Q Consensus 146 ~~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~--~~~~~~~~~~~~~~~ 217 (415)
..++ .++ .|++||+.+++....... .. ......++|++..|+++...++...|| +..+.....+..+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC--CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 8777 133 699999988765433322 22 344566777788887766555555554 555555556655555
Q ss_pred ceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe---EEEEEce
Q 014977 218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLR 291 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~---i~vwd~~ 291 (415)
......|+|||++|+..+.+ .. |.+||+.+++.. .+... . ......|+|||++|+.++.++. +.+++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 56778999999998876543 34 888999888653 44432 1 2346789999999999888764 6666664
Q ss_pred e
Q 014977 292 V 292 (415)
Q Consensus 292 ~ 292 (415)
.
T Consensus 407 G 407 (429)
T PRK03629 407 G 407 (429)
T ss_pred C
Confidence 3
No 207
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.1e-12 Score=110.70 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=104.1
Q ss_pred eEEEEcCCeEEEE---e----------CCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEE-EeCCccCeEEE
Q 014977 137 RSVKLSRDRIVVV---L----------EHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLA-CPGLQRGQVRI 201 (415)
Q Consensus 137 ~~l~~~~~~~~~~---~----------d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~dg~v~i 201 (415)
..+.|+++|..++ . -+...+|.++ .......+..... ..+.+++|+|++..++ +.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3466777776665 1 1234444442 2233444433322 1366677777666554 44667788999
Q ss_pred EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977 202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (415)
|+.+.+.+..+. ...++.+.|+|+|++|++++. .|. |.+||+++.+.+..+. |. .+..++|+|||++|++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEE
Confidence 999877777664 567789999999999998864 467 9999999888887765 33 4789999999999998
Q ss_pred EeC------CCeEEEEEceec
Q 014977 279 ASD------KGTVHIFSLRVR 293 (415)
Q Consensus 279 ~s~------dg~i~vwd~~~~ 293 (415)
++. |+.++||++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeccceeccccEEEEEecCe
Confidence 874 678999998643
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.9e-12 Score=119.70 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=118.6
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..|.+||...+.......+...+....|+||++.++ . ...|++||+.+++... +..... ......++|++.
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCCC
Confidence 579999975544444344777899999999998877 1 3469999998776543 222222 223456667777
Q ss_pred EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCc-EEEEEECCCCcEEEEEecCCCccc
Q 014977 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE 263 (415)
Q Consensus 188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~ 263 (415)
.++++.+.+| .|++++........+..+.......+|+|||+.|+..+. ++. .|+++|+.+++.. .+.. ....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence 7765544455 577788777777777777666678999999998887764 332 2666777676643 3322 2223
Q ss_pred EEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDKG---TVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~ 294 (415)
...++|+|||++|+..+.++ .|.+||+.+++
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 45689999999998765443 69999987765
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.51 E-value=1.4e-12 Score=124.44 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=162.5
Q ss_pred CCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCe--EEEEecCCCCCCCC
Q 014977 42 VDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPP 113 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~~ 113 (415)
.-...|.++.|+|... ++|.|. +|.|.+||+...... .......|...++.+.|..+- .-+++++.|
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD----- 314 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD----- 314 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC-----
Confidence 4467899999999665 455555 999999999865442 112224677888888887643 336777767
Q ss_pred CeEEEEECCCCCEEEE------E-------EccCceeEEEEcCC--eEEEE--eCCeEEEEEcCCc--------eeeeEE
Q 014977 114 TKVIIWDDHQSRCIGE------F-------AFRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDL--------KLLHQI 168 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~------~-------~~~~~i~~l~~~~~--~~~~~--~d~~i~iwd~~~~--------~~~~~~ 168 (415)
|.|..|+++.-..... . .-...+++++|.+. ..+++ ..|.|+.-+.... +.+..+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999998654322111 1 12346778888753 23444 6788776333221 112234
Q ss_pred eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEE
Q 014977 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFN 245 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd 245 (415)
..|..++.. +..+|-+..++.+++ |.+|+||... ..++..+..+...+++++|||-. ..++++..||. |.+||
T Consensus 395 ~~h~g~v~~--v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWD 470 (555)
T KOG1587|consen 395 ITHIGPVYA--VSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWD 470 (555)
T ss_pred cccCcceEe--eecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhh
Confidence 455554444 444444433333343 9999998766 45666677777889999999965 47888888999 99999
Q ss_pred CCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 246 TVDG--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 246 ~~~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+... +++..... .....+.+.|+++|+.|++|...|++++|++...-
T Consensus 471 Ll~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred hhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 9654 34444443 34567788899999999999999999999997554
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3e-12 Score=122.60 Aligned_cols=214 Identities=12% Similarity=0.057 Sum_probs=139.7
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 145 (415)
.|.+||.+.... .. +..+...+....|+|++..++..+... ....|.+||+.+++......+.+......|+|||
T Consensus 185 ~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCCCCc-eE--eecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 477777764332 21 224556678889999987777654320 1257999999888765444455566688999999
Q ss_pred EEEE----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCcc
Q 014977 146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDS 217 (415)
Q Consensus 146 ~~~~----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~ 217 (415)
..++ .+ ..|++||+.+++.. .+..+.. ......+++++..|+++...+|. |++++........+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 8765 23 36999999887643 3333322 22345667777788776555555 4445554444555544444
Q ss_pred ceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEce
Q 014977 218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR 291 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~ 291 (415)
....++|+|+|++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 555789999999988765433 5 999999887765 4432 1234567899999998877654 357777775
Q ss_pred e
Q 014977 292 V 292 (415)
Q Consensus 292 ~ 292 (415)
.
T Consensus 412 g 412 (433)
T PRK04922 412 G 412 (433)
T ss_pred C
Confidence 4
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=2.6e-12 Score=109.86 Aligned_cols=229 Identities=13% Similarity=0.125 Sum_probs=163.3
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
.++|+|.+|++|++.+|++. ...|.||.....+ -.....+..|...+..+.|.+....+++++.| ..-+||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC-----CCcccccc
Confidence 46799999999999999999 7799999998655 34445567888999999999999999999998 99999997
Q ss_pred -CCCCEEEE---EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE--EeccCCCcceEEEecCCCceEEEEe
Q 014977 122 -HQSRCIGE---FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ--IETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 122 -~~~~~~~~---~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
..++-..+ +++....+++.|+|.+..++ ....|.||-++...-=.. .-......++.+++|++++-++++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa- 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA- 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc-
Confidence 44443333 34899999999999988888 456677777654321100 011111236788888888877765
Q ss_pred CCccCeEEEEEcCC-------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-EE
Q 014977 193 GLQRGQVRIEHFGL-------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RL 252 (415)
Q Consensus 193 g~~dg~v~i~~~~~-------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~ 252 (415)
|+.|+.++++..-- ..+..+....+.+..+.|+|+|..|+-.+.|.. +.+-|..... .+
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p~~~v 242 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGPSERV 242 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCCchhc
Confidence 88999998843211 112233345678999999999999999999999 9999875553 33
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
..+.. ..-+..++.|-.+.. ++.++.|
T Consensus 243 ~~~~~--~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 243 QSVAT--AQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred cchhh--ccCCceeeEeecCCc-eeecCCC
Confidence 33333 224677777755433 3344444
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=2.6e-11 Score=104.23 Aligned_cols=235 Identities=10% Similarity=0.094 Sum_probs=160.4
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+.|..+.|..|.-++.++. ++.|.+|++..-+ ..-.+..+..++....|+|++ .++.+...+ -.|.||.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPdgrhiL~tseF~-----lriTVWSL 121 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPDGRHILLTSEFD-----LRITVWSL 121 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCCcceEeeeecce-----eEEEEEEe
Confidence 5688899999998888777 8899999998544 333455788899999999999 566666666 89999998
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE----e-----------------------------------CCeEEEEEcCCc
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV----L-----------------------------------EHKIYVYSFVDL 162 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~-----------------------------------d~~i~iwd~~~~ 162 (415)
.+.+....--.+..+..++|+|||++.+ . +..+.+||.--.
T Consensus 122 ~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 122 NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred ccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence 8876554333456678888888887665 1 122334442111
Q ss_pred eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-----EEcCC-------------------------------
Q 014977 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGL------------------------------- 206 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-----~~~~~------------------------------- 206 (415)
-.+..+ ....++...+++|-+++|++ |+.|+.+++ |..-+
T Consensus 202 ykv~aY---e~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 202 YKVYAY---ERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred heeeee---eeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 111111 11234556667777778876 889998887 32111
Q ss_pred -------------------------cceEEEe------cCccceEEEEeCCCCCEEEEEeCC--CcEEEEEECCCCcEEE
Q 014977 207 -------------------------NMIKLIN------AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 207 -------------------------~~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~~ 253 (415)
..+..++ ...-.+.-++|++|..++++-... .. +.+||++..+...
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna-lW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA-LWLWDLQNLKLHA 356 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce-EEEEechhhhhhh
Confidence 0001111 112245678999999999986643 45 8999998777655
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+. ...+|....|+|....|+.+.....+++|...-..
T Consensus 357 vLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 357 VLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred hhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 554 34579999999999999988888889999877644
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.4e-12 Score=127.17 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=163.7
Q ss_pred CCCceEEEEEeC--CCCEEEEEe-CCcEEEEEccCCc----eeEEE--ec----cCCCeeEEEEeeeC-CeEEEEecCCC
Q 014977 43 DEIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFK----ETFRR--DL----KSGGFRIVEMLFRC-NILALVGAGDN 108 (415)
Q Consensus 43 h~~~V~~l~~sp--~g~~la~g~-d~~v~iw~~~~~~----~~~~~--~~----~~~~~~~~~~~~~~-~~~~l~s~~~d 108 (415)
....|+.+.+-. |..++.+|+ ||.|+||+--... ++... .+ ......-.-+.|.. .|.++++|+.
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence 345688888754 456788888 9999999753211 11110 01 11111113344554 5666666654
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc---eeeeEEeccCCCcceEE
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCC 179 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 179 (415)
..|+|||....+.+..+. ....|+++.-+- .|..++ .||.|++||.+.. ..+.....|.....++.
T Consensus 1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 899999999888888776 355667666543 345555 7999999998643 34556677776544565
Q ss_pred EecCCCceE-EEEeCCccCeEEEEEcCCcc---eEEEecCc--c-ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 180 LSHHSSTSV-LACPGLQRGQVRIEHFGLNM---IKLINAHD--S-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 180 ~~~~~~~~~-l~~~g~~dg~v~i~~~~~~~---~~~~~~~~--~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
++..++|.- |+ +|+.+|.|++|+.+... ...+..|. + ..+++..+++...+|+|+. +. |+||++ .|+.+
T Consensus 1262 ~slq~~G~~elv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l 1337 (1387)
T KOG1517|consen 1262 LSLQRQGLGELV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQL 1337 (1387)
T ss_pred EEeecCCCccee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhh
Confidence 555544433 43 58899999999988732 22233343 3 5899999999999999998 77 999998 56655
Q ss_pred EEEecC-----CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 253 QEVRRG-----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 253 ~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
..++.. ...+.+.+++|+|-.-+||+|+.|.+|.||...++.
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 554421 123467999999999999999999999999877654
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.4e-11 Score=114.91 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=120.0
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..|.+||...........+...+...+|+|||+.++ .+..|++|++.+++...... ... ......++|++.
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~--~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR--HNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC--CcCCeEECCCCC
Confidence 589999977655544444677899999999998887 13579999998875433221 111 122456677777
Q ss_pred EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-Cc-EEEEEECCCCcEEEEEecCCCccc
Q 014977 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAE 263 (415)
Q Consensus 188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~ 263 (415)
.|+++...+| .|++|+........+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+.. ....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~ 332 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQ 332 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence 7877555555 4667777776677776666678899999999988777654 33 1555577666543 4433 2334
Q ss_pred EEEEEeCCCCCEEEEEeCC---CeEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDK---GTVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~ 294 (415)
.....|+|||++|+..+.+ ..|.+||+++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 5678899999999876654 358888987765
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=6.4e-11 Score=109.89 Aligned_cols=191 Identities=14% Similarity=0.091 Sum_probs=121.4
Q ss_pred CEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 57 ~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
.++++.. ++.|.|.|.++.+.+.+.. .+......+.+++++.++...+.| +.|.++|+.+++.+.++....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecCC
Confidence 4555444 8999999999866655443 333335567789988766666666 999999999999999999888
Q ss_pred ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCC-----cceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977 135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL-----RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG 205 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~ 205 (415)
...++++++||++++ ..+.+.++|.++.+.++.+.....+ ..+.++..++....++++--+.+.|.+-+..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 889999999999887 6899999999999999888654221 2344554444444344434455777764433
Q ss_pred C-cce-EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEE
Q 014977 206 L-NMI-KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 206 ~-~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~ 255 (415)
. ..+ ..............|+|++++++.+. .... |-++|.++++.+..+
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI 210 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred cccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence 2 222 22223345667889999999876654 4445 888888776655443
No 216
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=1.8e-12 Score=120.05 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=128.1
Q ss_pred CeEEEEECCCC-C----EEEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc-------eeeeEEeccCCCcce
Q 014977 114 TKVIIWDDHQS-R----CIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL-------KLLHQIETLANLRGL 177 (415)
Q Consensus 114 ~~i~vwd~~~~-~----~~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~ 177 (415)
|.|-||++..- + .+-.+.....|+++.|+| |...++ .||.|++|.+..+ .....+..|...+..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 89999998653 2 233344678899999998 333333 8999999998543 344566777775555
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV 255 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~ 255 (415)
+.|++-... .|+ +++.|-+|++|+... +....+.+|.+.|..++|||+|+.+|+.+.||+ |+||+-++++. +++-
T Consensus 683 lRfHPLAad-vLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 683 LRFHPLAAD-VLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEecchhhh-Hhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence 555554332 344 467899999998765 455678999999999999999999999999999 99999887753 3333
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCC----eEEEEEceecc
Q 014977 256 RRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRV 294 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~~ 294 (415)
++. -...-..+.|.-||+++++.+.|. .|.+||.++-.
T Consensus 760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 221 223445678888999999887765 57777766543
No 217
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.1e-10 Score=107.17 Aligned_cols=237 Identities=12% Similarity=0.132 Sum_probs=157.2
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC-----CCeEEEEEC
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP-----PTKVIIWDD 121 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~-----~~~i~vwd~ 121 (415)
.+..+++++|+++|.+.+..++|++......++... .....++.|+|-+.++.+-..-..+. .-.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 788899999999999999999999998876444432 22788899999988887643321111 246789999
Q ss_pred CCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe----C
Q 014977 122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP----G 193 (415)
Q Consensus 122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g 193 (415)
+++.....+. .... ....|+.|..+.+ ..+.+++|++.+.+.+.. ..+...+....+++.|....+|+- +
T Consensus 113 et~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred ccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCC
Confidence 9976666665 2222 6889999998888 788999999865332211 112232344444444333333220 1
Q ss_pred CccCeEEE--------------------------EEcCC-------------------------------cceEEEecCc
Q 014977 194 LQRGQVRI--------------------------EHFGL-------------------------------NMIKLINAHD 216 (415)
Q Consensus 194 ~~dg~v~i--------------------------~~~~~-------------------------------~~~~~~~~~~ 216 (415)
+.-..|+| |+..+ .....--...
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 12222333 22111 1111111236
Q ss_pred cceEEEEeCCCCCEEEE--EeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEce
Q 014977 217 SHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR 291 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~ 291 (415)
++|.++.|+|+|+.+++ |-.-.. +.|||+ .+.++..+.. ++=+.+-|+|.|++|+.++-+ |.|-|||+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 89999999999986654 445567 999997 6788777754 356789999999999988764 789999999
Q ss_pred eccc
Q 014977 292 VRVV 295 (415)
Q Consensus 292 ~~~~ 295 (415)
+.++
T Consensus 345 n~K~ 348 (566)
T KOG2315|consen 345 NRKL 348 (566)
T ss_pred chhh
Confidence 9664
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=7.2e-12 Score=109.91 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=170.6
Q ss_pred CCCCCCceEEEEEeCCCC--EEEEEe-CCcEEEEEccCCceeEEE----eccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYG--CFAAGT-SCGFRIYNCEPFKETFRR----DLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~--~la~g~-d~~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
..+....|.+++|.-+++ .|...+ +..+..+.++..+..-.. ........+..+..... .++.+.+ +
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~~-s---- 124 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCVS-S---- 124 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEec-C----
Confidence 445567788888886654 444443 666777666543332221 12234444555444433 3333322 2
Q ss_pred CCeEEEEECCCC----CEEEEEEccCceeEEEEcCCeEEEE----eC--CeEEEEEcCCceeeeEEeccC-------CCc
Q 014977 113 PTKVIIWDDHQS----RCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLA-------NLR 175 (415)
Q Consensus 113 ~~~i~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~~----~d--~~i~iwd~~~~~~~~~~~~~~-------~~~ 175 (415)
|.+.+|..+.+ ..+..+.....+..|.-++....++ .. ..+.+||+++.+.+..-+.-. -|+
T Consensus 125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 99999997743 3344455556777777777666665 23 568999998875554432211 234
Q ss_pred ceEEEecCCC--ceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 176 GLCCLSHHSS--TSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
++..+.+-+. ...+|+ +..-+.+++|+.+. +++..+.--..+++++...|+|+++++|..-+. +..||++.++.
T Consensus 204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl 281 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL 281 (412)
T ss_pred eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence 5555555443 455554 66789999988764 567777778899999999999999999999999 99999999998
Q ss_pred EEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 252 LQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 252 ~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.. +.+ ..+.|.+|..+|.+++|++++-|..|+|+|+++.+-
T Consensus 282 ~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 282 LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 877 555 678999999999999999999999999999999553
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.3e-11 Score=116.62 Aligned_cols=217 Identities=13% Similarity=0.030 Sum_probs=143.0
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 145 (415)
.|.++|.+.... .. +..+...+....|+|++..++..+... .+..|.+||+.+++......+.+.+....|+|||
T Consensus 183 ~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 466666654322 11 225566788999999987766543210 1278999999888765444467778889999999
Q ss_pred EEEE----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEecCcc
Q 014977 146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS 217 (415)
Q Consensus 146 ~~~~----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~ 217 (415)
..++ .+ ..|++||+.+++.. .+..+.. ......++|++..|+++...+| .|++++..+...+.+..+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 8765 23 45888898876553 3433332 2234556667777777554444 56667777766677766666
Q ss_pred ceEEEEeCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC------CeEEEEE
Q 014977 218 HIACFTLTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK------GTVHIFS 289 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d------g~i~vwd 289 (415)
.+....|+|+|++|+..+.++ ..|.+||+..+.. ..+.. ...+..+.|+|||++|+..+.+ ..|++++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 677789999999988766432 2388899855543 34433 2246778999999998876543 2577777
Q ss_pred ceecc
Q 014977 290 LRVRV 294 (415)
Q Consensus 290 ~~~~~ 294 (415)
+..+.
T Consensus 411 l~g~~ 415 (435)
T PRK05137 411 LTGRN 415 (435)
T ss_pred CCCCc
Confidence 76544
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-11 Score=117.42 Aligned_cols=196 Identities=15% Similarity=0.082 Sum_probs=126.2
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCe--EEEEE
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK--IYVYS 158 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~--i~iwd 158 (415)
.+...+....|+|++..++..+.+. ....|.+||+.+++........+.+....|+||+..++ .++. |+++|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4555678899999997776554320 12569999999887655444566677899999998765 3554 55555
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--CCcceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
+..++ ...+..+.. ......++++++.|++++..++...||.. .+.....+..+.......+|+|||++|+..+.
T Consensus 271 ~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 55444 334433322 22334567777778776555566666543 33444444433344456889999999987765
Q ss_pred CC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEc
Q 014977 237 RG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL 290 (415)
Q Consensus 237 dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~ 290 (415)
++ . |.+||+.+++.. .+... .......|+|||++|+.++.++ .+++.++
T Consensus 348 ~~g~~~-I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 348 VGGAFK-LYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCCcEE-EEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 54 5 999999888754 33321 2346789999999998877654 3444444
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=6.8e-12 Score=109.97 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=153.3
Q ss_pred EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC------CCEEEEEE--ccCceeEEEEcCCeEEEE-
Q 014977 79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------SRCIGEFA--FRSDVRSVKLSRDRIVVV- 149 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~------~~~~~~~~--~~~~i~~l~~~~~~~~~~- 149 (415)
+++.+.+|...|.++.|+.++.+|++|++| ..+++|+++. .+++.... |...|.+++|+.....+.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 334455788888999999999999999998 9999999643 46666665 678999999998888887
Q ss_pred --eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCccceEEEE
Q 014977 150 --LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFT 223 (415)
Q Consensus 150 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~ 223 (415)
.+++|...|+++.+.+..+....+...+..+..+|-...+++ .+.++.|.+|+.+..+ ...+........++.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEE-EecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 689999999999988888766555445666666666566665 4589999998876543 222233456678899
Q ss_pred eCCCC-CEEEEEeCCCcEEEEEECCCCcE-EEEE---ecCC-CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 224 LTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEV---RRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 224 ~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~---~~~~-~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|+|.. .+|++.+..+. +-+||.+.... +... .+.. ....-.++.|+|.|..|.+.-....-.+||+-+..+.
T Consensus 202 F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 202 FHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred ecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 99954 57888999999 99999875432 1111 1100 1123357789999998887766666677787776543
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.6e-11 Score=114.56 Aligned_cols=173 Identities=10% Similarity=0.051 Sum_probs=120.4
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..|.++|...........+...+....|+|||+.++ .+..|++||+.+++.. .+..... ......++|++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCCC
Confidence 589999975544443334778999999999998877 2468999999887653 3333332 233455667777
Q ss_pred EEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CC--cEEEEEECCCCcEEEEEecCCCcc
Q 014977 188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RG--TLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 188 ~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg--~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
.|+++.+.++. |++++........+..+........|+|||+.|+..+. +| . |+++|+..++.. .+.. ...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence 77665555655 55567777777777777777778999999998887664 22 5 888898766543 4433 234
Q ss_pred cEEEEEeCCCCCEEEEEeCC---CeEEEEEceec
Q 014977 263 EIYSIALSPNVQWLAVASDK---GTVHIFSLRVR 293 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~ 293 (415)
.+....|+|||++|+..+.+ ..|.+||+..+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 56678899999999877653 35788887544
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=8.6e-13 Score=120.24 Aligned_cols=211 Identities=13% Similarity=0.130 Sum_probs=140.9
Q ss_pred CCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCC
Q 014977 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQ 110 (415)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~ 110 (415)
..+.....||++.|+++.|+.+|.+|++|+ |-.+.|||.-..+.+.... .+|...|.++.|-| +..+++++..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCc--
Confidence 445567899999999999999999999999 8899999987655544443 38888899988887 56788888877
Q ss_pred CCCCeEEEEECCCC----------CEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceee-------eEE
Q 014977 111 YPPTKVIIWDDHQS----------RCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-------HQI 168 (415)
Q Consensus 111 ~~~~~i~vwd~~~~----------~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~-------~~~ 168 (415)
..|+++|+... .....+. |...|..|+..|++..++ .||+|+-||++....- ..+
T Consensus 117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999998742 1122223 778888999988874443 7999999999652211 111
Q ss_pred -eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-------------------cceEEEe-cCc-----------
Q 014977 169 -ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------------------NMIKLIN-AHD----------- 216 (415)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------------------~~~~~~~-~~~----------- 216 (415)
.-+...+..-++..+|...++++.|+.+-..++++.+. .++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11112223334444444444444577888888877321 1122221 221
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
..++-++|+|+|..|+..-.... |+++|+..++.
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~ 307 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKS 307 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCC
Confidence 12566889999986655443334 99999976553
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=5.4e-11 Score=110.38 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=144.4
Q ss_pred eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
-..+.|+|||+++.+.+ |+.|.++|+.+.+.+.+.. -......+.+++++.+++.+... ++.+.++|.++.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 34577999999999888 9999999999877555443 34456778899998777665432 3999999999999
Q ss_pred EEEEEEc--------cCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeee--EEeccCCCcceEEEecCCCceEEEE
Q 014977 126 CIGEFAF--------RSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH--QIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 126 ~~~~~~~--------~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
.++.+.. ...+.++..++... +++ ..+.|.+.|..+.+.+. .+.... ......+++++++++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeee
Confidence 9998862 23567787777766 444 35888888877654332 232222 3445566666666554
Q ss_pred eCCccCeEEEEEcCC--------------------------------------------------------cceEEEecC
Q 014977 192 PGLQRGQVRIEHFGL--------------------------------------------------------NMIKLINAH 215 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~--------------------------------------------------------~~~~~~~~~ 215 (415)
+...+..|-+.+... +.++.+...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 333333443332221 122333333
Q ss_pred ccceEEEEeCCCCCEEEEE----eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC--CCeEEEEE
Q 014977 216 DSHIACFTLTLDGLLLATA----STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD--KGTVHIFS 289 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~----s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd 289 (415)
..+ .-+..+|++++|.+. ...+. |.++|.++.+.+..+... ....+..+.|++||+.+..+.. ++.|.|||
T Consensus 269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 333 556779999999988 34466 999999999888777642 1124899999999997665444 33799999
Q ss_pred ceecccC
Q 014977 290 LRVRVVG 296 (415)
Q Consensus 290 ~~~~~~~ 296 (415)
..+.+..
T Consensus 346 ~~Tl~~~ 352 (369)
T PF02239_consen 346 AKTLKEK 352 (369)
T ss_dssp TTTTEEE
T ss_pred CCCcEEE
Confidence 9998765
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.5e-11 Score=112.64 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=115.9
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..|.++|...........+...+.+.+|+||++.++ . ...|++||+.+++... +..... ......++|++.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g--~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKG--SNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCC--CccceEECCCCC
Confidence 578888864333333344778899999999998877 2 2469999998876543 222222 233556677777
Q ss_pred EEEEeCCccCeEEEEE--cCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEE--ECCCCcEEEEEecCCCcc
Q 014977 188 VLACPGLQRGQVRIEH--FGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIF--NTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~--~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vw--d~~~~~~~~~~~~~~~~~ 262 (415)
.|+++.+.++...||. ..+.....+..+........|+|||+.|+..+. ++. ..|| ++.+++.. .+.. ...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g~ 328 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TGS 328 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CCC
Confidence 7776666777766654 445556666666666677899999998876664 344 5555 44455432 2222 122
Q ss_pred cEEEEEeCCCCCEEEEEeCCC---eEEEEEceeccc
Q 014977 263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV 295 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~~ 295 (415)
.....+|+|||++|+..+.++ .|.+||+.+++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 344678999999999777654 699999987753
No 226
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.4e-09 Score=95.39 Aligned_cols=253 Identities=14% Similarity=0.112 Sum_probs=170.8
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe----CCcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT----SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~----d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
.+...+.+..+-++|+|++++|.++. +|.|..|.++.. ...+.-.........+.++.++++.+++++..
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY---- 108 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY---- 108 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc----
Confidence 34566778899999999999998876 577888888863 22222111122333367888899988877654
Q ss_pred CCCeEEEEECCC-CC---EEEEEEccCc----------eeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEecc-C
Q 014977 112 PPTKVIIWDDHQ-SR---CIGEFAFRSD----------VRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETL-A 172 (415)
Q Consensus 112 ~~~~i~vwd~~~-~~---~~~~~~~~~~----------i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~-~ 172 (415)
..+.|.++-+.. |. .+..+.|.+. +....+.|++++++ ....|.+|++.+++....-... .
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 358999999865 43 3344556555 88899999998888 4678999999877654322111 1
Q ss_pred CCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEec---------CccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINA---------HDSHIACFTLTLDGLLLATASTRGTLI 241 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~---------~~~~i~~l~~sp~g~~l~s~s~dg~~I 241 (415)
.......+.++|++++..+.+-.+++|.+|..+. ..+..++. .......|.+++||++|.++..--..|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 1224455667777777776777899999977665 33333332 234567899999999999876543338
Q ss_pred EEEECCCC-cEEEEEe-cCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecc
Q 014977 242 RIFNTVDG-TRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV 294 (415)
Q Consensus 242 ~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~ 294 (415)
.+|.+... ..+..+. ...+....+.+.|+++|++|+++..++ +|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 88876532 2232222 111333578999999999999888765 79999887554
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=6.5e-11 Score=102.38 Aligned_cols=244 Identities=11% Similarity=0.200 Sum_probs=154.4
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce---eEEEeccCCC------------eeEEEEeeeCC--e-EEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGG------------FRIVEMLFRCN--I-LALV 103 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~--~-~~l~ 103 (415)
..+-|.++.|...|.+||+|. +|.|.+|.-+.... .+...++.|. ..+..+.|.++ . .+++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345689999999999999999 99999997653221 1112221221 23445555543 2 4455
Q ss_pred ecCCCCCCCCCeEEEEECCCCC-----------------------------------EEEEEE--ccCceeEEEEcCCeE
Q 014977 104 GAGDNSQYPPTKVIIWDDHQSR-----------------------------------CIGEFA--FRSDVRSVKLSRDRI 146 (415)
Q Consensus 104 s~~~d~~~~~~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~i~~l~~~~~~~ 146 (415)
++. | .+|++|.+.... +.+.+. |...|++|.++.|..
T Consensus 104 stN-d-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 104 STN-D-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ecC-C-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 544 3 899999864321 111122 567789999999988
Q ss_pred EEE--eCCeEEEEEcCCc-eeeeEEeccC-------CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-----ceEE
Q 014977 147 VVV--LEHKIYVYSFVDL-KLLHQIETLA-------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-----MIKL 211 (415)
Q Consensus 147 ~~~--~d~~i~iwd~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-----~~~~ 211 (415)
.++ .|=.|.+|+++-- +........+ ..++...|+|...+ .+++ .+..|+|++-+++.. ..+.
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~Y-SSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVY-SSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEE-ecCCCcEEEeechhhhhhcchhhh
Confidence 777 6778999998532 2222222111 11234455555433 4455 457999999665531 1111
Q ss_pred Ee------------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCC----------cc---cEE
Q 014977 212 IN------------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVD----------RA---EIY 265 (415)
Q Consensus 212 ~~------------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~----------~~---~v~ 265 (415)
+. .--..|..+.|+++|+|+++-+. -+ |++||+. ..+++.++..+.+ .. .-.
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 11 12246788999999999997654 35 9999994 4566666654211 11 124
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.++|+.++.++++|+..+.+++|++..|.+.
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCcce
Confidence 6789999999999999999999998777653
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.8e-12 Score=116.15 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=146.5
Q ss_pred EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcC--CeEEEE---eCCe
Q 014977 81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR--DRIVVV---LEHK 153 (415)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~--~~~~~~---~d~~ 153 (415)
..+.+|...|.++.|+.+|.+|++|++| -.+.|||.-..+.+..+. |...|.++.|-| +.++++ .|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 3456899999999999999999999998 999999999888888887 899999999987 344444 7999
Q ss_pred EEEEEcCCc----------eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ce---------EEE
Q 014977 154 IYVYSFVDL----------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MI---------KLI 212 (415)
Q Consensus 154 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~---------~~~ 212 (415)
|++||+... +....+..|.. .+-.++..|.+...+.++++||+++-++.+.. +. ..+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~--rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTD--RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhh--hhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 999999642 22233344555 33345555555445556789999999776641 11 111
Q ss_pred ecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCC--------Cc----------EEEEEecCCC----------ccc
Q 014977 213 NAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--------GT----------RLQEVRRGVD----------RAE 263 (415)
Q Consensus 213 ~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--------~~----------~~~~~~~~~~----------~~~ 263 (415)
....-...++.++|.. .+|++|+.|-. .++||.+. +. ++..+..+.. ...
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence 1222356789999955 58999999998 99999431 11 1222221100 012
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
++.+.|+|+|.-|++.-....|++||+..++..
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 567899999987776666667999999988754
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=1.7e-09 Score=100.37 Aligned_cols=241 Identities=19% Similarity=0.161 Sum_probs=154.2
Q ss_pred CceEEEEEeCCCCEEEEEe-C----CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 45 IELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
.....++++|++++|.+.. . +.|..|+++.. ...............+.+..++++.+++.+.. ..+.|.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany----~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY----GGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET----TTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc----cCCeEE
Confidence 3456788999999999887 3 57888988764 22222222224555667888888876666543 249999
Q ss_pred EEECCC-CCEEEE---EEc-----------cCceeEEEEcCCeEEEE----eCCeEEEEEcCCce--ee--eEEeccCCC
Q 014977 118 IWDDHQ-SRCIGE---FAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--LL--HQIETLANL 174 (415)
Q Consensus 118 vwd~~~-~~~~~~---~~~-----------~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~--~~--~~~~~~~~~ 174 (415)
++++.. |..... +.+ .....++.++|++++++ ....|++|++.... .. ..+.. ...
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G 191 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPG 191 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STT
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccC
Confidence 999887 433222 222 24577899999988776 36789999996644 22 22322 222
Q ss_pred cceEEEecCCCceEEEEeCCccCeEEEEEcC--Cc---ceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LN---MIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~---~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
.....+.++++++++.+....++.|.++... .. .+..+... ......|+++|||++|+++......|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 3456667777777777777788899985554 22 22222211 1257789999999998887754434999
Q ss_pred EECC--CCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977 244 FNTV--DGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV 292 (415)
Q Consensus 244 wd~~--~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~ 292 (415)
|++. +++. +..+.. .....+.++++|+|++|+++. .++.|.+|+++.
T Consensus 272 f~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 9983 3433 333333 233479999999999999877 556899999863
No 230
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.6e-12 Score=116.63 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=148.8
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc--------eeEEEeccCCCeeEEEEeeeCCeEEEEecCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 108 (415)
-...+|.++|.|+++.+++..+.+|+ ||+|+.|++.... ..+...+.+|...+..++++.....|++++.|
T Consensus 338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD 417 (577)
T ss_pred EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence 34689999999999999999999999 9999999764221 12333455888889899999988889999988
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE-eCCeEEEEEc---CCceeeeEEeccC--CC---cc
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSF---VDLKLLHQIETLA--NL---RG 176 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~d~~i~iwd~---~~~~~~~~~~~~~--~~---~~ 176 (415)
|+++.|+...... .++. ..+.-..+.+......+. .+.....+++ .....+..+.... .+ ..
T Consensus 418 -----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 418 -----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred -----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 9999999766655 3333 233344555544332222 3444444443 3333333332111 11 12
Q ss_pred eEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
+..+..++...+.+ ++..|+.|++ +..++..+....+|...++++++.|+|-+|++++.|+. +++|.+....++...
T Consensus 492 in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es 569 (577)
T KOG0642|consen 492 INKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES 569 (577)
T ss_pred cceEEecCCCCeeE-ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence 33344445554444 4779999999 66778888899999999999999999999999999999 999998777666554
Q ss_pred ec
Q 014977 256 RR 257 (415)
Q Consensus 256 ~~ 257 (415)
..
T Consensus 570 ~~ 571 (577)
T KOG0642|consen 570 TA 571 (577)
T ss_pred cc
Confidence 44
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.6e-10 Score=99.33 Aligned_cols=248 Identities=15% Similarity=0.142 Sum_probs=161.5
Q ss_pred CCCCCceEEEEEeCC-CCEEEEEeCCcEEEEEccCCceeEE----------Eec-cCCCeeEEEEeeeCCeEEEEecCCC
Q 014977 41 DVDEIELISVSWNQD-YGCFAAGTSCGFRIYNCEPFKETFR----------RDL-KSGGFRIVEMLFRCNILALVGAGDN 108 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~-g~~la~g~d~~v~iw~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~l~s~~~d 108 (415)
......|++++|-|. ++-|++|..+.|.||..+.-....+ ..+ ..++..|..|.|.+|+..+++++.+
T Consensus 137 s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 137 SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred chhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence 345667999999995 4688888899999998863111110 001 2456889999999999999987764
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (415)
+..|.|||..++..+.... ..+.+.-+.|+||+.++. -|+..++|+.....-......... .+..-.|+|
T Consensus 217 ----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg--rvqtacWsp 290 (445)
T KOG2139|consen 217 ----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG--RVQTACWSP 290 (445)
T ss_pred ----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC--ceeeeeecC
Confidence 6899999999998877664 677888999999998877 699999996543222222222222 444555666
Q ss_pred CceEEEEeCCccCeEEEEEcCCc-----------ce---EEE-----ecC----ccceEEEEeCCCCCEEEEEeCCCc--
Q 014977 185 STSVLACPGLQRGQVRIEHFGLN-----------MI---KLI-----NAH----DSHIACFTLTLDGLLLATASTRGT-- 239 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~~~~-----------~~---~~~-----~~~----~~~i~~l~~sp~g~~l~s~s~dg~-- 239 (415)
.|.+|.++.+..-.++--....+ .+ ..+ ... .+++.+++|.|.|.+||+.-..+.
T Consensus 291 cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v 370 (445)
T KOG2139|consen 291 CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV 370 (445)
T ss_pred CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence 67676665544444433111110 00 000 111 467889999999999998765432
Q ss_pred -----EEEEEECCCCcEEEEEe-cCCCcccEEEEEeCC---CCCEEEEEeCCCeEEEEEceecc
Q 014977 240 -----LIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSP---NVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 240 -----~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---dg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.|.+||.+..-.+.-.. +.........++|+| ++.+|..+-..|.+.-|++.-..
T Consensus 371 ~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~ 434 (445)
T KOG2139|consen 371 LLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQC 434 (445)
T ss_pred hhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEEe
Confidence 26678876544332221 111111245566765 67888888889999999886543
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.5e-10 Score=100.82 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=144.2
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEEC
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+-.+..++|++.--.+|++. |..|++|+-........+ ......+.+++|.|.. ..++.+.. +.|.+|..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lk--s~sQrnvtclawRPlsaselavgCr------~gIciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLK--SVSQRNVTCLAWRPLSASELAVGCR------AGICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceec--chhhcceeEEEeccCCcceeeeeec------ceeEEEEc
Confidence 34578999999777788888 999999997752222221 1445678889998853 34454444 78999985
Q ss_pred CC----CC--------EEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977 122 HQ----SR--------CIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 122 ~~----~~--------~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
.. +. ..+.++ ....|++|+|++||..++ .+..|.|||..++..+........ .+.-+.++
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg--g~slLkwS 247 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG--GFSLLKWS 247 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC--ceeeEEEc
Confidence 32 11 112233 236899999999999888 689999999988876654422222 34445556
Q ss_pred CCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----Cc--------
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----GT-------- 250 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----~~-------- 250 (415)
|++.++.+ +.-|+..++|.....- .....-..+.|....|+|+|++|..+.... -++|.+.. +.
T Consensus 248 Pdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 248 PDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred CCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccce
Confidence 66666665 4579999999544321 122223345899999999999766544332 23443321 10
Q ss_pred ---EEEEEe-----cC--CCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 251 ---RLQEVR-----RG--VDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 251 ---~~~~~~-----~~--~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
.+..+. .+ .-.+++.+++|.|.|.+||+.-..+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 011111 00 0134688999999999999876543
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=1.5e-11 Score=111.99 Aligned_cols=216 Identities=11% Similarity=0.130 Sum_probs=134.1
Q ss_pred CCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeEEEEECCCCCEEEE
Q 014977 55 DYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGE 129 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~ 129 (415)
.+--|.+|- .|.+.+.+....+. ++.....-....+.++.|-+ +..++++-.. |.+.+||.+
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~------- 250 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKE------- 250 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------CceEEeecc-------
Confidence 344455555 66777766543111 01111112235667777765 4566665433 899999851
Q ss_pred EEccCceeEEE--EcCCeEEEEeCCeEEEEEc-CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC
Q 014977 130 FAFRSDVRSVK--LSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL 206 (415)
Q Consensus 130 ~~~~~~i~~l~--~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~ 206 (415)
+ ....+... ..+++..+. |..|-- .+..++..+..... .+..+++++++++||++ +.||.++|++...
T Consensus 251 ~--~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt 321 (636)
T KOG2394|consen 251 I--VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATV-SQDGFLRIFDFDT 321 (636)
T ss_pred c--cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccc--cccceeEcCCCceEEEE-ecCceEEEeeccH
Confidence 1 11111111 112222221 111110 11123333322222 45566777789999985 5899999988776
Q ss_pred cce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC--------------
Q 014977 207 NMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-------------- 271 (415)
Q Consensus 207 ~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-------------- 271 (415)
..+ -.++..-+...|++|||||+||++|++|.- |.||.+..++.+..-.+ |++.|..++|.|
T Consensus 322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGM 398 (636)
T ss_pred HHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeecccccccccccccccc
Confidence 443 344555678899999999999999999999 99999998888877666 999999999982
Q ss_pred ---------------------CC-------------CEEEEEeCCCeEEEEEceeccc
Q 014977 272 ---------------------NV-------------QWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 272 ---------------------dg-------------~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
++ -.|.+.+.|-.+.+||+....-
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 1467888999999999977543
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=9.7e-11 Score=98.82 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=77.0
Q ss_pred eEEEecCCCceEEEEeCCc---------cCeEEEE--EcCCcceEEEec-CccceEEEEeCCCCCEEEEE--eCCCcEEE
Q 014977 177 LCCLSHHSSTSVLACPGLQ---------RGQVRIE--HFGLNMIKLINA-HDSHIACFTLTLDGLLLATA--STRGTLIR 242 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~---------dg~v~i~--~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~--s~dg~~I~ 242 (415)
-+.+.|+++|.+|++.... -+...++ +.....+..+.- ..++|.+++|+|+|+.+|+. ..++. |.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cE
Confidence 3556666666665543321 1223332 233344444443 34579999999999987654 45677 99
Q ss_pred EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEceeccc
Q 014977 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVV 295 (415)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~ 295 (415)
+||++ ++.+..+.. ..+..+.|+|+|++|++++.+ |.|.+||+++.+.
T Consensus 87 lyd~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 87 LYDVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred EEcCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 99996 777766653 367889999999999998754 6799999996664
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=2.4e-08 Score=92.77 Aligned_cols=278 Identities=13% Similarity=0.136 Sum_probs=163.0
Q ss_pred CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC--C--EEEEEE-ccCcee
Q 014977 65 CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--R--CIGEFA-FRSDVR 137 (415)
Q Consensus 65 ~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~--~--~~~~~~-~~~~i~ 137 (415)
+.|.+|+++.. .......+ ........+.+++++..|.+..... ...+.|..|++... + .+.... ......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 78999988432 22222211 2233334466677665554443310 12389999987764 2 233333 456667
Q ss_pred EEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeE---Ee--c------cCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977 138 SVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQ---IE--T------LANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 138 ~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~---~~--~------~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
.++++|++.+++ .++.|.++++.. +..... +. + .........+.++|++++++++.-....|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 899999998877 589999999976 443332 11 0 0122345667777888777765544557877
Q ss_pred EEcCCcc--e---EEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--CCc--EEEEEec---CC-CcccEEEE
Q 014977 202 EHFGLNM--I---KLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGT--RLQEVRR---GV-DRAEIYSI 267 (415)
Q Consensus 202 ~~~~~~~--~---~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~--~~~~~~~---~~-~~~~v~~l 267 (415)
+..+... + ..+. ........++|+|+|+++++..+....|.++++. ++. .+..+.. .. .......|
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 6554432 2 2222 3345678999999999887776654449999987 443 2333322 11 11257889
Q ss_pred EeCCCCCEEEEEe-CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 268 ALSPNVQWLAVAS-DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 268 ~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
.++|||++|+++. ..+.|.+|+++..... +..
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~--------------------------------------l~~--------- 283 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGT--------------------------------------LTL--------- 283 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTT--------------------------------------EEE---------
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCc--------------------------------------eEE---------
Confidence 9999999988765 4668999999543211 000
Q ss_pred ccccceEEEEeCCCceEEEEecCC-CEEEEEEe-CCcEEEEEEecCCCCcEEE
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFDPVHGGEMLQ 397 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-dg~~~~~~~~~~~~~~~~~ 397 (415)
...+.......--++++++ +.|++++. ++.|.+|.++...| .+..
T Consensus 284 -----~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG-~l~~ 330 (345)
T PF10282_consen 284 -----VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG-KLTP 330 (345)
T ss_dssp -----EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEEE
T ss_pred -----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC-cEEE
Confidence 1223333233445778888 66777776 58999999997654 4443
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=5.1e-10 Score=107.19 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=119.4
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
..|.++|...+.......+...+....|+||++.++ . ...|++||+.+++..... .... ......+++++.
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~--~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPG--MNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCC--CccceEECCCCC
Confidence 578888875444444344666788999999999887 1 257999999887554322 2222 223345566676
Q ss_pred EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcc
Q 014977 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
.|+++.+.++ .|++++........+..+........|+|+|+.|+..+..+ . |+++|+.+++.. .+.. +..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCC
Confidence 6666554444 46667777666666666665566789999999887665432 4 888888777653 3433 334
Q ss_pred cEEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977 263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV 294 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~ 294 (415)
.+..+.|+|+|++|+.++.++ .|.+||+.++.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 567889999999999888776 78888887744
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=6.7e-10 Score=106.35 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=137.1
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 145 (415)
.|.++|.+..... . +..+...+....|++++..++...... ....|.+||+.+++......+...+.++.|+||+
T Consensus 171 ~l~~~d~~g~~~~-~--l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGANPQ-T--ITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCCCCE-E--eecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 3666666532221 1 214444577888999998777654320 1158999999988766555566677789999999
Q ss_pred EEEE----e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEecCcc
Q 014977 146 IVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS 217 (415)
Q Consensus 146 ~~~~----~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~ 217 (415)
..++ . +..|++||+.+++.. .+..+... .....+++++..|+++....+ .|++++........+..+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~--~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGI--DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCC--CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 7665 1 346999998876543 33222221 123345567777766554444 45556666666666666667
Q ss_pred ceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEc
Q 014977 218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL 290 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~ 290 (415)
.+..+.|+|+|++|+.++.++ . |.+||+.++... .+... .......|+|||++|+..+.++ .+++.+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 778889999999999888765 6 899998876543 33321 1234568999999988877765 3455443
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=7.7e-09 Score=94.04 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=150.9
Q ss_pred EeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 52 WNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 52 ~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
++|||+.|+++. +..|.+||..+.+...+..+... ......+.++++++.+.....+ .+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~---p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS---PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC---CCCE
Confidence 899999887654 47899999999887766554222 2233467889998776654432 2399
Q ss_pred EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-ceee-eE---EeccCCCcceE-EEecCCCceE
Q 014977 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLL-HQ---IETLANLRGLC-CLSHHSSTSV 188 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-~~~~-~~---~~~~~~~~~~~-~~~~~~~~~~ 188 (415)
|.+.|+.+++.+.++.-.....-...+++..++. .|+......+.+ ++.. .. +.....++... .+.+ .++.+
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~ 208 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRL 208 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcE
Confidence 9999999999999998655444444555444443 566665554432 2211 11 11100100000 1222 14555
Q ss_pred EEEeCCccCeEEEEEcCCc------ceEEEec-------CccceEEEEeCCCCCEEEEEeC----------CCcEEEEEE
Q 014977 189 LACPGLQRGQVRIEHFGLN------MIKLINA-------HDSHIACFTLTLDGLLLATAST----------RGTLIRIFN 245 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~------~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~----------dg~~I~vwd 245 (415)
+..+ ..|+|.+-+..+. ....+.. ..+.+.-++++++|+.+++... .+. |.++|
T Consensus 209 ~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD 285 (352)
T TIGR02658 209 VWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD 285 (352)
T ss_pred EEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence 5443 3499998553332 1222111 1233445999999998887431 135 99999
Q ss_pred CCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecccCC
Q 014977 246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~~~~ 297 (415)
..+++.+..+..+ ..+..++++||++ +|++.. .++.|.++|+.+++...
T Consensus 286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9999999998853 3789999999999 877666 57889999999988653
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=9.1e-10 Score=104.81 Aligned_cols=201 Identities=11% Similarity=0.046 Sum_probs=127.7
Q ss_pred CCCeeEEEEeeeCCeEE--E--EecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e--CC--eE
Q 014977 85 SGGFRIVEMLFRCNILA--L--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--EH--KI 154 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--l--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~--d~--~i 154 (415)
..........|+|++.. + ++... ....|.+.++..++..+.....+......|+|||+.++ . ++ .+
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 34445567789999642 3 33211 12578888998887655555666667789999998877 3 22 33
Q ss_pred --EEEEcCCc---eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--C--CcceEEEecCccceEEEEeC
Q 014977 155 --YVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--G--LNMIKLINAHDSHIACFTLT 225 (415)
Q Consensus 155 --~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~--~~~~~~~~~~~~~i~~l~~s 225 (415)
.+|++..+ +.......... ......++|++..|+++...+|...+|.. . +.....+..+...+....|+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 44676542 22222222211 12345667788888876656676555443 2 23345555555677889999
Q ss_pred CCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCeEEEEEceeccc
Q 014977 226 LDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRVRVV 295 (415)
Q Consensus 226 p~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~ 295 (415)
|||+.|+..+.+ .. |.+||+.+++.. .+.. ....+....|+|||++|+..+. ...|++||+..++.
T Consensus 336 PDG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999988876543 35 999999888764 3433 2235677899999998875443 34688889887654
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=9.8e-10 Score=101.02 Aligned_cols=235 Identities=11% Similarity=0.096 Sum_probs=157.1
Q ss_pred EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+++.|+.|..+.|--..+.+.+|+......... .+ +...+..+.++|. -..++.---..+-....|++|......
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceee-ee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 688888887766655588899999987544332 33 3445556666654 333332111111234789999865332
Q ss_pred EEEEE---E-ccCceeEEEEcCCeEEEE---------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 126 CIGEF---A-FRSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 126 ~~~~~---~-~~~~i~~l~~~~~~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
.-..+ . +...-..+.|++-|.-++ ...+++++++....+...+. ...++..+.|+++...
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence 22221 1 344455678887654333 13578899887444443333 3556666666666543
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecCCCccc
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (415)
+.++-|.+--.+.|++.++..+..+. .++-+++-|+|.|++|+.++- .|. |.|||+.+.+++..+... .
T Consensus 285 -F~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~----~ 356 (566)
T KOG2315|consen 285 -FAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA----N 356 (566)
T ss_pred -EEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC----C
Confidence 33445888899999999988877664 567788999999999988775 477 999999998888877752 3
Q ss_pred EEEEEeCCCCCEEEEEeC------CCeEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASD------KGTVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~~ 294 (415)
-+-+.|+|||+++++++. |+.++||+.....
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 456889999999998875 6779999986543
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=9.7e-10 Score=103.70 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=194.7
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-------------eEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-------------TFRRDLKSGGFRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 107 (415)
.......+++|+....++|+|+ ||.++|..+++... ...+.+.+|...+.-+.|+.+...|.+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4556789999999999999999 99999998864211 122345788999999999999999998888
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-eEEeccCCCcceEEE
Q 014977 108 NSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCL 180 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~ 180 (415)
+ |.|.||-+-.|....++. .++.|.+++|+.||..++ .||.|.+=.+...+.- +.+++. ....+
T Consensus 92 ~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv 162 (1189)
T KOG2041|consen 92 S-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHV 162 (1189)
T ss_pred C-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----eccce
Confidence 7 999999988776544432 567899999999998887 7898888776433221 112211 22234
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCCcce--------EEE----ecCccceEEEEeC--------CCCCEEEEEeCCCcE
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMI--------KLI----NAHDSHIACFTLT--------LDGLLLATASTRGTL 240 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~--------~~~----~~~~~~i~~l~~s--------p~g~~l~s~s~dg~~ 240 (415)
.++++...+.+ +-.+|.+.+++..+.-. ... ......|..+.|. |+...|+++-.+|.
T Consensus 163 ~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr- 240 (1189)
T KOG2041|consen 163 LWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR- 240 (1189)
T ss_pred eecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-
Confidence 45555555554 56788999977665221 111 1122335556664 46678999999998
Q ss_pred EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD 320 (415)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (415)
+.|-.-........+.. .-.+..+.|+++|..||+++.+..-. ..+.
T Consensus 241 ~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~-----~~~d------------------------- 287 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDAD-----EPTD------------------------- 287 (1189)
T ss_pred ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccccc-----Cccc-------------------------
Confidence 88765433332223443 23688999999999999998765210 0110
Q ss_pred ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecC
Q 014977 321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~ 390 (415)
.|....++.++ ..+.++++|......+.|...+--++...|+.||+-++.|+
T Consensus 288 --------~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 288 --------SNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred --------cceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 01122222232 23458899988888888887777788888999999888873
No 242
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=7.5e-09 Score=88.96 Aligned_cols=214 Identities=12% Similarity=0.165 Sum_probs=141.7
Q ss_pred CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-CCCEEEEEE---ccCceeEEE
Q 014977 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEFA---FRSDVRSVK 140 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-~~~~~~~~~---~~~~i~~l~ 140 (415)
+.|.|||=.....+.+.. -...|.++.+.++...++.. +.|.||... +-+.++.+. .+..+.+++
T Consensus 75 NkviIWDD~k~~~i~el~---f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS---FNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcEEEEEE---eccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 458999944334444433 45567788888888777763 899999976 446666665 244455555
Q ss_pred EcCCeEEEE----eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCe-EEEEE-cCCcceEEE
Q 014977 141 LSRDRIVVV----LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ-VRIEH-FGLNMIKLI 212 (415)
Q Consensus 141 ~~~~~~~~~----~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~-v~i~~-~~~~~~~~~ 212 (415)
-..+..+++ .-|.|.|-|+...+. ...+..|...+.++ +.+-+|..+|+ ++..|+ |+||+ .++..+..+
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv--~Ln~~Gt~vAT-aStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACV--ALNLQGTLVAT-ASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEE--EEcCCccEEEE-eccCcEEEEEEEcCCCcEeeee
Confidence 555666666 579999999976554 46678888855544 45556777776 667776 67765 556677777
Q ss_pred ec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-----------Eec-----------CCCcccEEEEE
Q 014977 213 NA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-----------VRR-----------GVDRAEIYSIA 268 (415)
Q Consensus 213 ~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-----------~~~-----------~~~~~~v~~l~ 268 (415)
+. ....|++|+|||++.+||++|..|+ ++||.++....-.. +.. ....++..-++
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~ 299 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIA 299 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEE
Confidence 63 3568999999999999999999999 99998865321100 110 00123444566
Q ss_pred eCCCCCEEEEEeCCCeEEEEEceec
Q 014977 269 LSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 269 ~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
|-.+.+.++..+.||+-+=+.+...
T Consensus 300 fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 300 FGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred ecCCCCeEEEEEeCCcEEEEEeccc
Confidence 7666566666777886555554433
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.2e-09 Score=104.77 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=128.8
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~ 145 (415)
.+.++|.+...... +......+....|+|++..++....+. ....|.+||+.+++...............|+||+
T Consensus 199 ~l~i~d~dG~~~~~---l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQM---LLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceE---eecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 34555655432211 224455677889999997766543320 1147999999888764433344455678999999
Q ss_pred EEEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCcc
Q 014977 146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDS 217 (415)
Q Consensus 146 ~~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~ 217 (415)
..++ .++ .|+++|+.+++.. .+..+.. ......+++++..|+++...++...+ ++........+.....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 8776 244 4888898876543 3333322 22344566677777776655555445 4554444554443333
Q ss_pred ceEEEEeCCCCCEEEEEeCC-Cc-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--eEEEEEce
Q 014977 218 HIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLR 291 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~ 291 (415)
.....+|+|||++|+..+.+ +. .|.++|+.+++.. .+... . ......|+|||++|+..+.+ + .+++++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34567899999988776553 32 2666788777653 33321 1 12245799999988866554 3 36666663
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=6.6e-10 Score=106.55 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=134.6
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe--CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEe-cCCCCCCCCCe
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVG-AGDNSQYPPTK 115 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~~~~~~ 115 (415)
..+...+.+..|+|||+.|+..+ ++ .|.+||+.+++......+ ........|+|++..++. ...+ ....
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~---g~~~ 287 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKD---GQPE 287 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCC---CCeE
Confidence 34566788999999999998766 33 477778876554322222 222335789999876553 3333 1135
Q ss_pred EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
|.++|+.+++......+........|+||+..++ . ...|+++|+.+++... +..... ......++|++.+|
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~--~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE--QNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC--CCcCeeECCCCCEE
Confidence 8888988877654444555667889999998776 2 2467888887766433 221111 11223456667777
Q ss_pred EEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-c-EEEEEECCCCcEEEEEecCCCcccEE
Q 014977 190 ACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 190 ~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
++++..++...| .+........+.... ......|+|||+.|+..+.++ . .+++++. +|+....+.. ..+.+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~~ 440 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEVK 440 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCcC
Confidence 776655555555 455554444444321 223457999999887665443 2 2677786 6666666654 445677
Q ss_pred EEEeCC
Q 014977 266 SIALSP 271 (415)
Q Consensus 266 ~l~~sp 271 (415)
..+|+|
T Consensus 441 ~p~Wsp 446 (448)
T PRK04792 441 SPAWSP 446 (448)
T ss_pred CCccCC
Confidence 788887
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.8e-09 Score=100.17 Aligned_cols=173 Identities=17% Similarity=0.076 Sum_probs=116.3
Q ss_pred eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
.|.++|...+.......+...+....|+|||+.++ . ...|++||+.+++..... .... ......++|++..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g--~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEG--LNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCC--CcCCeEECCCCCE
Confidence 58888876555444445777889999999998876 1 246999999887654322 1121 1224556677777
Q ss_pred EEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-C--cEEEEEECCCCcEEEEEecCCCccc
Q 014977 189 LACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-G--TLIRIFNTVDGTRLQEVRRGVDRAE 263 (415)
Q Consensus 189 l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (415)
|+++...+| .|++++........+..+........|+|||+.|+..+.. + . |+++|+.+++... +.. ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~-lt~--~~~~ 332 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAER-VTF--VGNY 332 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCC
Confidence 776554555 4666777776667676666667778999999987766542 2 4 7788887777543 322 1122
Q ss_pred EEEEEeCCCCCEEEEEeCC-C--eEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDK-G--TVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~~~ 294 (415)
.....|+|||++|+..+.+ + .|.+||+.+++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3457899999999877653 3 58888888765
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.7e-09 Score=97.13 Aligned_cols=237 Identities=18% Similarity=0.198 Sum_probs=156.4
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC------CCCeEEEEE
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY------PPTKVIIWD 120 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~------~~~~i~vwd 120 (415)
=+-+.|||-|.+|++-...+|.+|--+....+.+ | .+..+.-+.|+|+-.+|++-+..|.- ....++|||
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~R--F--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQR--F--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHh--c--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 4678999999999999988999998776665443 2 34456677899999999987665443 236899999
Q ss_pred CCCCCEEEEEEc---cCce-eEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 121 DHQSRCIGEFAF---RSDV-RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 121 ~~~~~~~~~~~~---~~~i-~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
+.+|...+.+.. ...+ .-+.|+.|+++++ ....|.||+.....++..-.. ...++..|+|+|.+.+||+=.-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEcc
Confidence 999998888773 2222 2368999999999 678999999766444322222 2225677888888878876322
Q ss_pred ccC----eEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-------CCc--EEEEEECCCCc-EEEEEecCC
Q 014977 195 QRG----QVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-------RGT--LIRIFNTVDGT-RLQEVRRGV 259 (415)
Q Consensus 195 ~dg----~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-------dg~--~I~vwd~~~~~-~~~~~~~~~ 259 (415)
... .+.+ -..+.+.+++..-+.-.-..+.|-.+|.+|+.--. .|. .+.|+.++... ++..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---
Confidence 221 2223 22333444444334333345778888988875321 111 25566665443 233333
Q ss_pred CcccEEEEEeCCCCCEEEEEeC---CCeEEEEEcee
Q 014977 260 DRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRV 292 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~ 292 (415)
....|...+|-|.|..+++-+. ..++.+|.+++
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 3457899999999998776544 35799999985
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-09 Score=107.87 Aligned_cols=209 Identities=11% Similarity=0.101 Sum_probs=141.9
Q ss_pred EEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCC-------CEEEEEE-ccCceeEEEEcCCeEEEE
Q 014977 79 FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQS-------RCIGEFA-FRSDVRSVKLSRDRIVVV 149 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~i~~l~~~~~~~~~~ 149 (415)
+..+++.|...+..++.++. +.+++++++| |+|++|+...- +...++. ....+..+...+.+..++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 34456677777777777664 4899999998 99999996431 2233333 567888888888777766
Q ss_pred ---eCCeEEEEEcCCc--e-----eeeEEeccCCCcceEE---EecCCCceEEEEeCCccCeEEEEEcCCcc-eE--EEe
Q 014977 150 ---LEHKIYVYSFVDL--K-----LLHQIETLANLRGLCC---LSHHSSTSVLACPGLQRGQVRIEHFGLNM-IK--LIN 213 (415)
Q Consensus 150 ---~d~~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~--~~~ 213 (415)
.||.|++.++... + +......+..+ .++. +........+++ +...+.|..|+.+... .. ...
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g-~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG-VVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCC-ceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcC
Confidence 7999999998642 1 11111222221 1222 222222224444 4456677778766532 22 223
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC---CEEEEEe--CCCeEEEE
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV---QWLAVAS--DKGTVHIF 288 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s--~dg~i~vw 288 (415)
...+.|++++.+|.+.++++|+..|. +.+||++-+.++..+.-+ +..++..+..+|-. ...++++ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 44688999999999999999999999 999999999998888755 44788888877633 4555544 46789999
Q ss_pred EceecccC
Q 014977 289 SLRVRVVG 296 (415)
Q Consensus 289 d~~~~~~~ 296 (415)
++.+|.+.
T Consensus 1271 n~~~g~~~ 1278 (1431)
T KOG1240|consen 1271 NMETGLRQ 1278 (1431)
T ss_pred ecccCcce
Confidence 99999654
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.3e-09 Score=101.91 Aligned_cols=214 Identities=12% Similarity=0.041 Sum_probs=131.8
Q ss_pred EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeE
Q 014977 67 FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI 146 (415)
Q Consensus 67 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 146 (415)
|.++|.+.... .. +..+...+....|+|++..++..+.+. ....|.+||+.+++........+.+....|+|||.
T Consensus 181 l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 181 LQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence 55555554322 11 214455678889999997776544320 12479999998887655444555666789999998
Q ss_pred EEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccc
Q 014977 147 VVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSH 218 (415)
Q Consensus 147 ~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~ 218 (415)
.++ .++ .|++||+.+++.. .+..+.. ......+++++..|+++...++. |++++........+......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 776 233 6899999877643 3333222 22334566677777766555554 55555554444444433333
Q ss_pred eEEEEeCCCCCEEEEEeCC-C-cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--eEEEEEcee
Q 014977 219 IACFTLTLDGLLLATASTR-G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLRV 292 (415)
Q Consensus 219 i~~l~~sp~g~~l~s~s~d-g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~ 292 (415)
.....|+|+|++|+..+.+ + ..|.+||+.+++.. .+... .......|+|||++|+..+.+ | .|+++++..
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4567899999998876643 2 12888999887653 33321 122356899999999876654 2 466666643
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=7.8e-09 Score=95.82 Aligned_cols=187 Identities=12% Similarity=0.169 Sum_probs=139.0
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE----ccCceeEEEEc------C--------------CeEEEE---e
Q 014977 98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLS------R--------------DRIVVV---L 150 (415)
Q Consensus 98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~i~~l~~~------~--------------~~~~~~---~ 150 (415)
...+++....| |.+++|+..+++...++. ..+...+..|. | +...++ .
T Consensus 4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 34556666665 999999999999888876 23444444443 1 122333 5
Q ss_pred CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC
Q 014977 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL 229 (415)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~ 229 (415)
.|.|.+|++..++....+.+..+...+.++..+.+-..|. +++.|+.+..|+... ..+.........+.+++.+|||.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 7899999999999988887655555666666655544554 466788888877655 45666777888899999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC-----CCEEE-EEeCCCeEEEEEceeccc
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQWLA-VASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~-s~s~dg~i~vwd~~~~~~ 295 (415)
.|++++. . |++||+++++.+..|.+ |.++|.+++|-.+ |.++. +...+.-|.+|-++...+
T Consensus 158 ~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 158 ILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred EEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence 9999885 4 99999999999999999 8999999999876 56555 445555689998887443
No 250
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.21 E-value=2.9e-11 Score=115.55 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=146.0
Q ss_pred cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEc
Q 014977 84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSF 159 (415)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~ 159 (415)
.+|-..|.+..|+..+..++++++| ..++||..+++.++.... |.+.|+.++.+.++.+++ .|..|++|.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 4788889999999999999999998 999999999999999988 999999999999988887 6888999999
Q ss_pred CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE----e-cCccceEEEEeCCCCCEEEEE
Q 014977 160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----N-AHDSHIACFTLTLDGLLLATA 234 (415)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~----~-~~~~~i~~l~~sp~g~~l~s~ 234 (415)
.++.++..+.+|...++ +++++|. + +.+.||++++|+.+....... . ....-+.++.|-.++.-++++
T Consensus 262 ~~~~pvsvLrghtgavt--aiafsP~----~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVT--AIAFSPR----A-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred CCCchHHHHhcccccee--eeccCcc----c-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999998555 4455442 2 356899999999884332221 1 123456778888888899999
Q ss_pred eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCC
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
+.|+. -..|.+..... +...+.-+.++.|- .+.+++-.+-.+.+|++.++...+
T Consensus 335 s~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 335 SRDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred cCCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 99998 88886532211 11111122222222 456677778889999999997654
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.8e-09 Score=98.87 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=132.0
Q ss_pred CCCCCceEEEEEeCCCCEEE---EEe-CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 41 DVDEIELISVSWNQDYGCFA---AGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la---~g~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
......+.+-+|+|||+.++ +.. ++ .|.+.++++++......+ ........|+||+..|+.........+-
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcce
Confidence 33455677889999998532 333 44 466667766543332222 2233457899999666644321111123
Q ss_pred eEEEEECCCC---CEEEEEEc-cCceeEEEEcCCeEEEE----eCCe--EEEEEcCC-ceeeeEEeccCCCcceEEEecC
Q 014977 115 KVIIWDDHQS---RCIGEFAF-RSDVRSVKLSRDRIVVV----LEHK--IYVYSFVD-LKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 115 ~i~vwd~~~~---~~~~~~~~-~~~i~~l~~~~~~~~~~----~d~~--i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
.+..|++..+ +....... ........|+|||+.++ .++. |+++++.. +.....+..... ......++
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeEC
Confidence 4455776653 33333322 23456789999998776 2453 55555532 222333433322 23445667
Q ss_pred CCceEEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecC
Q 014977 184 SSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 184 ~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
|++..|+++...++ .|.+++..+.....+......+....|+|||+.|+.... ... |+++|+..++......
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~-- 412 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI-- 412 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec--
Confidence 77778877654443 577788777776766655556778999999998775443 245 8899998776544333
Q ss_pred CCcccEEEEEeCCCC
Q 014977 259 VDRAEIYSIALSPNV 273 (415)
Q Consensus 259 ~~~~~v~~l~~spdg 273 (415)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 33456778888743
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.2e-09 Score=107.26 Aligned_cols=136 Identities=14% Similarity=0.209 Sum_probs=104.2
Q ss_pred eCCeEEEEEcCCceeeeEEeccCCCc--ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE-EEecCccceEEEEeCC
Q 014977 150 LEHKIYVYSFVDLKLLHQIETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTL 226 (415)
Q Consensus 150 ~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-~~~~~~~~i~~l~~sp 226 (415)
.++.+-+||...+.....+....... ..+-+-..++..++++ |+.-+.|.+|........ .+.+|.+.|.++.++.
T Consensus 107 ~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~ 185 (967)
T KOG0974|consen 107 SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSL 185 (967)
T ss_pred cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccCCcceecccCCceEEEEEcc
Confidence 68889999987776665554332211 1122333444556654 778889999876643333 4889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
||+++++.|+|.. +++|++.+.+... ..-+ |.+.|+.+.|.|+ .|++++.|-+.++|+.+
T Consensus 186 dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 186 DGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred CCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 9999999999999 9999999988765 3334 8999999999998 89999999999999543
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.2e-09 Score=96.29 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=144.2
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----eeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEE
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~v 118 (415)
...|..++.. ||.++++-++|.+.+|..+... ..... ..+..+..+.-.+.. .++++|+.. .-+.+.+
T Consensus 105 ~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~l---a~g~g~~~~r~~~~~p~Iva~GGke---~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL---ATGPGLYDVRQTDTDPYIVATGGKE---NINELKI 177 (412)
T ss_pred cccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceee---ecCCceeeeccCCCCCceEecCchh---cccceee
Confidence 3444444433 3444444449999999987322 12221 223444555555544 444556543 1267999
Q ss_pred EECCCCCEEEEEE----------ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEec
Q 014977 119 WDDHQSRCIGEFA----------FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 119 wd~~~~~~~~~~~----------~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 182 (415)
||++..+.+..-+ .+-.++++.|-+. ...++ .-+.+++||.+.+ +++..+....+++..+.+.+
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999887666543 2345678888776 55555 6789999999754 56777777777666555555
Q ss_pred CCCceEEEEeCCccCeEEEEEcCCcc-eEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGLNM-IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (415)
+ +.++++ |...+.+..++.+... ... +.+-.+.|.+|..+|.+++|++++-|.. +||+|+++.+++....-
T Consensus 258 ~--gn~Iy~-gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv--- 330 (412)
T KOG3881|consen 258 S--GNFIYT-GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV--- 330 (412)
T ss_pred C--CcEEEE-ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---
Confidence 4 555554 7788888887666544 333 6788899999999999999999999999 99999999777766553
Q ss_pred cccEEEEEeCCC
Q 014977 261 RAEIYSIALSPN 272 (415)
Q Consensus 261 ~~~v~~l~~spd 272 (415)
.+.+++|.+.++
T Consensus 331 Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 KSRLTFILLRDD 342 (412)
T ss_pred hccccEEEecCC
Confidence 345677777654
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=1.2e-08 Score=93.04 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=160.6
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----------CC
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----------YP 112 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----------~~ 112 (415)
..-++..+.|||.|.+|++.....|.+|.......+.+. ....+..+.|+|++.+|++-...+. ..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~----~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF----RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee----ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 455789999999999999999888999998876644432 3445778889999999999877543 24
Q ss_pred CCeEEEEECCCCCEEEEEEc-cCc--ee-EEEEcCCeEEEE--eCCeEEEEEcCCceee-eEEeccCCCcceEEEecCCC
Q 014977 113 PTKVIIWDDHQSRCIGEFAF-RSD--VR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~-~~~--i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 185 (415)
++.+.+||..+|..+..+.. ..+ .. -+.|+-+..+++ ....++|+++ +.... ..+.. ..+..+..++++|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~-lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN-LRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh-ccccceeeEEecCC
Confidence 45799999999999998873 222 33 678999998888 6889999997 32221 11111 11234455555443
Q ss_pred --ceEEEEe----CCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeC-----------CCcEEEEEECC
Q 014977 186 --TSVLACP----GLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATAST-----------RGTLIRIFNTV 247 (415)
Q Consensus 186 --~~~l~~~----g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~-----------dg~~I~vwd~~ 247 (415)
+..||+- +..++++++|...... +.+..-....-..+.|++.|++|+.--. ... ++|+++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence 3334331 2456788887765432 2222212233346889999987654211 134 8888886
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEE--eCCCeEEEEEceec
Q 014977 248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA--SDKGTVHIFSLRVR 293 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~--s~dg~i~vwd~~~~ 293 (415)
... +..... ..++|...+|.|.++.+++. -.+-.+.++|++.+
T Consensus 264 e~~-i~V~~~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 264 ERS-IPVEKD--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccc-cceecc--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 332 223223 46799999999998877654 46778999998876
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=118.40 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=145.3
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcC
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV 160 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~ 160 (415)
+-..+.+|.-+|...+.++|+.| |.|++|....++.+..++ ....|+.+.|+.+|.... .||.+.+|...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34456777888888888999988 999999999999888887 457899999999887665 79999999976
Q ss_pred CceeeeEEeccCCCcceEEEecCCCceEEEEeC--CccCeEEEEEcCCcce--EEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
.+.....+.|.. ....|.+-. ..++.+| +.++.+.+|+...... ..-+.|.+.++++++-|..++|++|+.
T Consensus 2282 -pk~~~s~qchnk--~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNK--ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCc--cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 455555566655 444444443 2344444 4677888988654321 122789999999999999999999999
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|. |++||++..+.++.++. +. ...++++++..|.|+||++....-.
T Consensus 2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchh
Confidence 999 99999988877766653 44 5678999999999999999887533
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-10 Score=97.49 Aligned_cols=254 Identities=13% Similarity=0.176 Sum_probs=160.5
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----EEEEEE-c------------cCceeEEEEcCCeEE
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFA-F------------RSDVRSVKLSRDRIV 147 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~-~------------~~~i~~l~~~~~~~~ 147 (415)
...-+.++.|.-.|..|++|..+ |.|.++.-.... ....++ | ...|..+.|.+++..
T Consensus 24 eadiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 34446678899999999999988 999999743221 122222 2 256888999876543
Q ss_pred ---EE--eCCeEEEEEcCCceeee--------------------EEe--------------ccCCCcceEEEecCCCceE
Q 014977 148 ---VV--LEHKIYVYSFVDLKLLH--------------------QIE--------------TLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 148 ---~~--~d~~i~iwd~~~~~~~~--------------------~~~--------------~~~~~~~~~~~~~~~~~~~ 188 (415)
++ .|.+|++|.+....... .+. .+.+...+..++.+.+...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 22 79999999984321110 010 1122334566777777777
Q ss_pred EEEeCCccCeEEEEEcCC--cc--eEEEecCc-----cceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCc------EE
Q 014977 189 LACPGLQRGQVRIEHFGL--NM--IKLINAHD-----SHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT------RL 252 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~--~~--~~~~~~~~-----~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~------~~ 252 (415)
++++ .|=.|.+|.... +. +..++.+. .-|++..|+|.. ..++..+..|+ |++-|++... .+
T Consensus 179 ~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 179 FLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKL 255 (433)
T ss_pred Eeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhh
Confidence 7652 566677787653 22 22333332 358889999954 57778888999 9999998432 11
Q ss_pred EEEec-CC-------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc-cCCCCCCCCCCCCcccccccCCCCCcccC
Q 014977 253 QEVRR-GV-------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLI 323 (415)
Q Consensus 253 ~~~~~-~~-------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (415)
..... +. --..|.++.|+++|++|++-.. -+|++||+.-.. ..++...
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v---------------------- 312 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV---------------------- 312 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee----------------------
Confidence 11111 00 1136889999999999987643 469999995443 2222111
Q ss_pred CCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 324 SPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
..++...|...+..+-.|..|. |+|+.+ ..+.+|+....+++|.++.
T Consensus 313 -----------h~~lr~kLc~lYEnD~IfdKFe--------c~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 313 -----------HEYLRSKLCSLYENDAIFDKFE--------CSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred -----------hHhHHHHHHHHhhccchhheeE--------EEEcCCcceEecccccceEEEecCCC
Confidence 2234434555666666666665 889987 6777777799999998765
No 257
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=9.9e-08 Score=98.34 Aligned_cols=244 Identities=13% Similarity=0.096 Sum_probs=151.4
Q ss_pred CCceEEEEEeCCCCEEEEEe--C---CcEEEEEccCCc-eeEEEecc-----CCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 44 EIELISVSWNQDYGCFAAGT--S---CGFRIYNCEPFK-ETFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d---~~v~iw~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...+...+|.+....+.+.. . ..|.+....... ......+. .....++++.|-++...++.+..+
T Consensus 21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~---- 96 (928)
T PF04762_consen 21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS---- 96 (928)
T ss_pred ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC----
Confidence 34577778877665443333 2 234444333222 11111121 345678888888876554444444
Q ss_pred CCeEEEE----ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcC---------------C--------c
Q 014977 113 PTKVIIW----DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---------------D--------L 162 (415)
Q Consensus 113 ~~~i~vw----d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---------------~--------~ 162 (415)
|.|.+. +..+...-..-.....|.+++|+||+.+++ .++++.+.+-. . |
T Consensus 97 -Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 97 -GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWG 175 (928)
T ss_pred -ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccC
Confidence 888888 544443333333688999999999998888 46677665420 0 1
Q ss_pred eeeeEEecc------------C----------CCcceEEEecCCCceEEEEeCC--c---cCeEEEEEcCCcceEEEecC
Q 014977 163 KLLHQIETL------------A----------NLRGLCCLSHHSSTSVLACPGL--Q---RGQVRIEHFGLNMIKLINAH 215 (415)
Q Consensus 163 ~~~~~~~~~------------~----------~~~~~~~~~~~~~~~~l~~~g~--~---dg~v~i~~~~~~~~~~~~~~ 215 (415)
+...+|.+. . .......++|-+||.++|++.- . -..+++|++.+.....-..-
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v 255 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPV 255 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccC
Confidence 111122110 0 1114567889999999987543 2 25788899987655444444
Q ss_pred ccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 216 DSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.+--.+++|.|.|++||+... +...|.+|. ++|-.-..|.-. .....|..|.|++|+..||..-.|. |.+|-..
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 444457899999999998765 222377887 466555555432 2456899999999999999988766 9999887
Q ss_pred ecc
Q 014977 292 VRV 294 (415)
Q Consensus 292 ~~~ 294 (415)
+..
T Consensus 334 NYH 336 (928)
T PF04762_consen 334 NYH 336 (928)
T ss_pred CCE
Confidence 653
No 258
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=8.7e-10 Score=99.64 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=139.7
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCC---eEEEE--eCCeEE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRD---RIVVV--LEHKIY 155 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~---~~~~~--~d~~i~ 155 (415)
|..|...+..+.|...+..++++++| ..|.+||+..++....+. |...|....|-|. ..++. .||.++
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred ccCCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 45788888899999999999999998 999999999998887776 7777777677663 33333 789998
Q ss_pred EEEcC-Ccee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-Ccc---eEEEecCcc---ceEEEEeC
Q 014977 156 VYSFV-DLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNM---IKLINAHDS---HIACFTLT 225 (415)
Q Consensus 156 iwd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~---~~~~~~~~~---~i~~l~~s 225 (415)
+=.+. ++.+ ...+..|..++..+++.+.....++ +++.|+.+.-.+++ ..+ ...-..+.. ...+++.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~--S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL--SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCccc--ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 87763 3333 3345667777777777776555444 46688888754333 322 222233333 56788999
Q ss_pred CCCC-EEEEEeCCCcEEEEEECCCCc------EEEEEecC----CCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 226 LDGL-LLATASTRGTLIRIFNTVDGT------RLQEVRRG----VDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 226 p~g~-~l~s~s~dg~~I~vwd~~~~~------~~~~~~~~----~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
|... ++++++.|.. +++||.+.-. .+..+..+ .....|++++|+.++.-|.++..|-.|++|.
T Consensus 291 P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred CCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 8665 7999999999 9999986432 12222211 1345799999998887777777788899993
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=8.2e-09 Score=89.63 Aligned_cols=249 Identities=11% Similarity=0.119 Sum_probs=175.3
Q ss_pred CCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 33 ~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
..-+.....||.+.|+....-|...-+.+.+ |.+++||--....+......+.....+.++.+......|+.+-..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n--- 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN--- 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec---
Confidence 3335566889999999999999888888888 999999976554443333334567778889999988888877766
Q ss_pred CCCeEEEEECCC----CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977 112 PPTKVIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 112 ~~~~i~vwd~~~----~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
|++.-+.+.. ...++.+. |...+..+-|+.....++ .|..+.---.+.+..+..+..... ..++..+
T Consensus 90 --gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~d 164 (404)
T KOG1409|consen 90 --GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQFD 164 (404)
T ss_pred --ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCcee
Confidence 8888876533 23333333 889999999987777666 344443333344444433321111 1111111
Q ss_pred CCceEEEEeCCccCeEEE---EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEEecCC
Q 014977 184 SSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGV 259 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~ 259 (415)
-. .++.|...|.|.+ .......+..+.+|.+.+.+++|.+...+|.+|..|.. +.+||+--.+- ..++.+
T Consensus 165 ~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g-- 238 (404)
T KOG1409|consen 165 AL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG-- 238 (404)
T ss_pred eE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--
Confidence 11 3445767777665 44555778889999999999999999999999999999 99999965443 334555
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
|...|..+...+--+.|.+++.||.|.+|+.+....
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 777888888888888999999999999999987653
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=3e-08 Score=97.67 Aligned_cols=194 Identities=10% Similarity=0.078 Sum_probs=142.4
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeE---EEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRI---VEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
-.+.|....+.-+...++.+. ++.+.+|+......... ......... .-+-++++...++++..- +.|.+
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~-i~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iiv 159 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSK-IQSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIV 159 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehh-cCCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEE
Confidence 344555566666677788777 99999999876433222 211111111 123356677888888776 99999
Q ss_pred EECCCC-CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeee-EEeccCCCcceEEEecCCCceEEEEeC
Q 014977 119 WDDHQS-RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 119 wd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
|+.... ..++...|.+.|.++.++-||.+++ .|..+++|++++.+... ..-+|...+.-+++.++ .+++ +
T Consensus 160 W~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t-~ 234 (967)
T KOG0974|consen 160 WKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIIT-V 234 (967)
T ss_pred EeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEE-e
Confidence 997633 3443444999999999999999998 79999999999987765 44566664444444443 4554 6
Q ss_pred CccCeEEEEEcCCcceEEEecCc-cceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 194 LQRGQVRIEHFGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
+.|-+.++|..+......+..|. ..|..++..++...+++++.|+. +++||+..
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG 289 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence 69999999999988888888885 56899999999999999999999 99999753
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1.1e-08 Score=87.15 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=140.2
Q ss_pred CcEEEEEccCCceeEEEec-cCCCeeEEEEeeeC---CeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-------
Q 014977 65 CGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRC---NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF------- 132 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~------- 132 (415)
|.+.+|+++..+......+ ......+..|.|.- ++. .++-+... |.|.++..........++.
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhh
Confidence 4577888875433221111 12334455555542 232 33333333 8899987554443333331
Q ss_pred cCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc
Q 014977 133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN 207 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~ 207 (415)
.....++.|++.+..++ .+|.+.+-+...... ++.++.|.-+.....+... ..-++++|+.|+.+..|+.+..
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--EPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--CCceEEecCCCceEEEEEecCC
Confidence 11245677877766665 577777555444433 3367777776665555543 3346778999999999998832
Q ss_pred c---eEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEe
Q 014977 208 M---IKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPN--VQWLAVAS 280 (415)
Q Consensus 208 ~---~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~s~s 280 (415)
. -+..+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ -++++..-. ..+.|+.+.++|. ++.|+++-
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHH
Confidence 2 223567889999998886 5779999999999 9999998 466665444 4578999999994 44566777
Q ss_pred CCCeEEEEEceeccc
Q 014977 281 DKGTVHIFSLRVRVV 295 (415)
Q Consensus 281 ~dg~i~vwd~~~~~~ 295 (415)
..| .+|-+.+.+..
T Consensus 275 h~G-~ki~~~~~~~~ 288 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVL 288 (339)
T ss_pred hcC-ceEEEeccccc
Confidence 777 78888877653
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=5.3e-07 Score=93.08 Aligned_cols=311 Identities=15% Similarity=0.133 Sum_probs=182.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEE----EccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIY----NCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...+.|.++.|-++...++++. +|.|.+. +.+........ .-..++.++.|+||...++-...+ ++|
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~-----~~l 144 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDEELLALVTGE-----GNL 144 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCcCEEEEEeCC-----CEE
Confidence 4457899999999998888888 9999888 44433322222 345678999999998666655444 666
Q ss_pred EEEECCCCCEEE------------------------EEE-------------------------ccCceeEEEEcCCeEE
Q 014977 117 IIWDDHQSRCIG------------------------EFA-------------------------FRSDVRSVKLSRDRIV 147 (415)
Q Consensus 117 ~vwd~~~~~~~~------------------------~~~-------------------------~~~~i~~l~~~~~~~~ 147 (415)
.+.. .+...+. +|. ....-..|+|-.||.+
T Consensus 145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 6654 1111111 110 1123456889999999
Q ss_pred EE-------eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEe---
Q 014977 148 VV-------LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLIN--- 213 (415)
Q Consensus 148 ~~-------~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~--- 213 (415)
++ .+ ..++||+- .|+...+-+.-.. ---+++|.|.|.+||++-...+ .|.++..++-.-..+.
T Consensus 224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECC-CceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 88 12 57999994 4665444332222 2346777788888887654333 3444777775544443
Q ss_pred -cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977 214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS 289 (415)
Q Consensus 214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd 289 (415)
.....|..+.|++|+..||..-.|. |.+|-..+-. ..+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 3456789999999999999977554 9999876654 23333321 22345569999954 4577777777777666
Q ss_pred ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccc-ccccCc-ccccccceEEEEeCCCceEEEEe
Q 014977 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM-RGVLPK-YFSSEWSFAQFHIPEVTHFIAAF 367 (415)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (415)
+.-.-........ .|. -...+-+|.+. .+..+ ...+|. + ....+.++. .+..++|
T Consensus 378 ~~~~v~~s~~~~~-------~D~--------g~vaVIDG~~l--llTpf~~a~VPPPM-----s~~~l~~~~-~v~~vaf 434 (928)
T PF04762_consen 378 FAWDVSRSPGSSP-------NDN--------GTVAVIDGNKL--LLTPFRRAVVPPPM-----SSYELELPS-PVNDVAF 434 (928)
T ss_pred EEEEEEecCCCCc-------cCc--------eEEEEEeCCeE--EEecccccCCCchH-----hceEEcCCC-CcEEEEE
Confidence 5543321100000 000 00000111110 00111 112221 1 112444543 5667788
Q ss_pred cCC-CEEEEEEeCCcEEEEEEecC
Q 014977 368 GSQ-NTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 368 ~~~-~~i~~~~~dg~~~~~~~~~~ 390 (415)
+++ ..+++..+||.+++|..+..
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCC
Confidence 887 66999999999999997653
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1.6e-07 Score=98.58 Aligned_cols=239 Identities=11% Similarity=0.049 Sum_probs=146.9
Q ss_pred EEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCC------------CeeEEEEeeeCCeE-EEEecCCCCCCC
Q 014977 48 ISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSG------------GFRIVEMLFRCNIL-ALVGAGDNSQYP 112 (415)
Q Consensus 48 ~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~l~s~~~d~~~~ 112 (415)
..+++++++ .++++-. ++.|++||.+.. ......-.+. -.....+++++++. ++++....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n---- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN---- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC----
Confidence 567888764 4555544 888999998643 2211110000 01235567776543 44444333
Q ss_pred CCeEEEEECCCCCEEEEEEc------------------cCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEec
Q 014977 113 PTKVIIWDDHQSRCIGEFAF------------------RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET 170 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~------------------~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~ 170 (415)
+.|+++|+.++. +.++.. -....+++++| ++.+.+ .++.|++||..++... .+.+
T Consensus 646 -~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 646 -HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred -ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 789999977654 333310 11345789998 555544 4688999998776543 2211
Q ss_pred cC-------------CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec----------------------C
Q 014977 171 LA-------------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA----------------------H 215 (415)
Q Consensus 171 ~~-------------~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~----------------------~ 215 (415)
.. .......+++++++..|+++...++.|++|+........+.+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 10 001223455666666555556678899998865433222110 0
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
-.....++++++|.++++-..++. |++||..++........+. .-.....|+++++|+++++-+.++.
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 112358899999998888888888 9999998776553322110 1124678999999999888889999
Q ss_pred EEEEEceeccc
Q 014977 285 VHIFSLRVRVV 295 (415)
Q Consensus 285 i~vwd~~~~~~ 295 (415)
|++||+++++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988764
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=7e-07 Score=81.42 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=127.7
Q ss_pred CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-----CCCCCCeEEEEECCCCCEEEEEEccCc----
Q 014977 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-----SQYPPTKVIIWDDHQSRCIGEFAFRSD---- 135 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~~~~~~i~vwd~~~~~~~~~~~~~~~---- 135 (415)
+.|.+.|.++.+.+-.... +...- .+ .++++..+..+..- ..-.+..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--GFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--cCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7899999988665444332 22111 13 67776544433320 000138999999999999999884333
Q ss_pred ----eeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEc
Q 014977 136 ----VRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHF 204 (415)
Q Consensus 136 ----i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~ 204 (415)
...++++|||+++. . +..|.+.|+.+++.+.++..... ...+........+.+ .||.... .+.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~~~---~Dg~~~~v~~d~ 176 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFFMHC---RDGSLAKVGYGT 176 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccEEEe---ecCceEEEEecC
Confidence 33789999998776 3 78999999999999998876431 222222222222222 2443332 222
Q ss_pred CCcc-eEE---EecCccce-EEEEeCC-CCCEEEEEeCCCcEEEEEECCCC-----cEEEEEec-----CCCcccEEEEE
Q 014977 205 GLNM-IKL---INAHDSHI-ACFTLTL-DGLLLATASTRGTLIRIFNTVDG-----TRLQEVRR-----GVDRAEIYSIA 268 (415)
Q Consensus 205 ~~~~-~~~---~~~~~~~i-~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~-----~~~~~~v~~l~ 268 (415)
+++. ... +.....++ ..-.|.+ +|+++....+ |. |.+.|+... +....+.. +-..+.+.-++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 2221 111 11101111 0013455 8888887777 88 999996433 33322221 11233445599
Q ss_pred eCCCCCEEEEEeC----------CCeEEEEEceecccC
Q 014977 269 LSPNVQWLAVASD----------KGTVHIFSLRVRVVG 296 (415)
Q Consensus 269 ~spdg~~l~s~s~----------dg~i~vwd~~~~~~~ 296 (415)
++++++.|++... .+.|.++|..+++..
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 9999998887542 247999998888753
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=1.2e-07 Score=89.58 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=125.7
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR 133 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 133 (415)
+..+++++ ++.+..+|.++++......+.. . +.. ... .++.+++.. .+ +.|..||.++|+.+.++...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~--~~~~p~v-~~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-E--VLSPPLV-ANGLVVVRT-ND-----GRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-e--eecCCEE-ECCEEEEEC-CC-----CeEEEEEcCCCceeeEEccC
Confidence 44566666 8888888888777666554421 1 111 111 234444443 33 89999999999998887743
Q ss_pred Ccee------EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCC----c-ceE----EEecCCCceEEEEeCCcc
Q 014977 134 SDVR------SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----R-GLC----CLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 134 ~~i~------~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----~-~~~----~~~~~~~~~~l~~~g~~d 196 (415)
.... ...+. ++.+++ .++.++.+|.++++.+......... . ... ..... ++ .+.+ ++.+
T Consensus 175 ~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~-~vy~-~~~~ 250 (377)
T TIGR03300 175 TPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GG-QVYA-VSYQ 250 (377)
T ss_pred CCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CC-EEEE-EEcC
Confidence 3221 11222 234444 5789999999999876554321100 0 000 00111 22 3333 3467
Q ss_pred CeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977 197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (415)
Q Consensus 197 g~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (415)
|.++.++. +++.+.... .. ...... ..+..++.++.+|. |..+|..+|+.+...... .......... .+..
T Consensus 251 g~l~a~d~~tG~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~ 322 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD-AS-SYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGY 322 (377)
T ss_pred CEEEEEECCCCcEEEeec-cC-CccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCE
Confidence 88887665 344433332 11 111122 24567888888999 999999999887665321 1111122222 4668
Q ss_pred EEEEeCCCeEEEEEceeccc
Q 014977 276 LAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~~~~~ 295 (415)
|++++.+|.|+++|.++++.
T Consensus 323 l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 323 LVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEEeCCCEEEEEECCCCCE
Confidence 88999999999999888874
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=8.5e-09 Score=95.19 Aligned_cols=175 Identities=11% Similarity=0.203 Sum_probs=138.2
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC---------CCcceEEE
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---------NLRGLCCL 180 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~ 180 (415)
..|.-++++.|..+..+. ..+.++++.+++-..+++ .+|.|..||.++...+..+.... ....+.++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 678888999999999998 458999999999777777 59999999998877766664332 22357888
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--ccceEEEEeCCCC--CEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+..++..+++ |..+|.|.|++++.........| .-+|..+.|.+.+ ..|++ .|...++|||-.+|+....+.
T Consensus 235 ~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 235 KFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred EecCCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe--cchHHhhhcccccCCceeecc
Confidence 88888888876 88999999988887666666666 5578899998763 34444 343339999999999988777
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
. ...++.+++-|++.+++++-.+..+..|=+..-.
T Consensus 312 p---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 312 P---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred c---cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 4 4569999999999999999999888888776544
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=1.9e-08 Score=87.37 Aligned_cols=196 Identities=13% Similarity=0.201 Sum_probs=134.9
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccC-C-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-F-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
..++++++++++.+.|++|- .|++.-+.+.. . +....+....|...+..+.|+-....+++.+.| ..+.---
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-----k~~~~hc 142 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-----KQFAWHC 142 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-----cceEEEe
Confidence 56789999999999999999 88888777642 1 122222234678888889999888888888886 4443333
Q ss_pred CCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (415)
.+.+..+..+.......++.+.-.-.++. ..+.|.+..+ ..-..+..+.+|.. .+.++.|++....+. +|..|.
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~Lf-Sg~~d~ 219 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLLF-SGASDH 219 (404)
T ss_pred eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEEE-eccccC
Confidence 45555555554333333333322211121 3455555444 44566777777777 566677776665654 588999
Q ss_pred eEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 198 QVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 198 ~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
.+.+|+..+.. ...+.+|...|..+..-+--+.|.+++.||. |.+||++.
T Consensus 220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~ 271 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNV 271 (404)
T ss_pred ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccc
Confidence 99999988754 4556789999999988888889999999999 99999853
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=6.2e-08 Score=87.73 Aligned_cols=142 Identities=10% Similarity=-0.066 Sum_probs=107.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CC-cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SC-GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
..-+|...|.-..+.-+++-++.|. || .+-||+.++.+... +...-..+.++..+++++.++.+.+. ..|
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dGK~~vvaNdr-----~el 425 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDGKKVVVANDR-----FEL 425 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCCcEEEEEcCc-----eEE
Confidence 3467888899999999999999999 77 89999999865322 22555678889999999988888776 899
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
.+.|+.+|.....-+ ..+-|+.+.|+|++++++ ....|+++|+..++....-.. .. .-.+-++++++++
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta--~DfsPaFD~d~ry 502 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TA--YDFSPAFDPDGRY 502 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cc--cccCcccCCCCcE
Confidence 999999998654433 578899999999999999 356899999988776544322 21 2334455666666
Q ss_pred EEE
Q 014977 189 LAC 191 (415)
Q Consensus 189 l~~ 191 (415)
|.+
T Consensus 503 LYf 505 (668)
T COG4946 503 LYF 505 (668)
T ss_pred EEE
Confidence 654
No 269
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=1.9e-07 Score=79.71 Aligned_cols=229 Identities=11% Similarity=0.113 Sum_probs=134.0
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCC-ceeE-EEe-ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPF-KETF-RRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
.++.+.+|++||+-.|..|.|-..... ..+. +.. .++..-.-..++|++|+.+||.+... |+|+++|+.. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~ 75 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S 75 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence 367789999999999999988766432 1111 111 12333444678899999999988877 9999999764 3
Q ss_pred EEEEEE--------ccCceeEEEEcCCe-------EEEE--eCCeEEEEEcC-----CceeeeEEecc-CCCcceEEEec
Q 014977 126 CIGEFA--------FRSDVRSVKLSRDR-------IVVV--LEHKIYVYSFV-----DLKLLHQIETL-ANLRGLCCLSH 182 (415)
Q Consensus 126 ~~~~~~--------~~~~i~~l~~~~~~-------~~~~--~d~~i~iwd~~-----~~~~~~~~~~~-~~~~~~~~~~~ 182 (415)
.+..+. ....|.+|.|.+-. .+++ ..|.++-|-+. ..+..+.+... ..+.++.++.+
T Consensus 76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 333433 23567777775432 3333 67777766652 22333444321 12346778888
Q ss_pred CCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEe---CCCCCEEEEEeCCCc-----EEEEEECCCCcEEEE
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTL---TLDGLLLATASTRGT-----LIRIFNTVDGTRLQE 254 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~---sp~g~~l~s~s~dg~-----~I~vwd~~~~~~~~~ 254 (415)
++..++|+++|.....-... ++....+++-.. .|..+. ++...|+. .-.+|.+-+.+....
T Consensus 156 ~p~h~LLlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCCEEEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeec
Confidence 88888888777655421111 111122222111 122211 12222221 012444333222211
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
. ......|..|..||||..||+...+|.|.+|++.+-+..
T Consensus 225 -~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 225 -Q-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred -c-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 1 114568999999999999999999999999999886644
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.9e-07 Score=81.02 Aligned_cols=221 Identities=12% Similarity=0.066 Sum_probs=143.5
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEE-eccCCC----------eeEEEEeeeCCeEEEEecCCCCCC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRR-DLKSGG----------FRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
.+-..++++++|++++++. .|.|.++.+...+.+... .+-.|. ..+....+.|++.++++..-.
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--- 165 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--- 165 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC---
Confidence 3348899999999999999 899999999653322211 110111 125667788998777665431
Q ss_pred CCCeEEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc-e---eeeEEec----cCCCc
Q 014977 112 PPTKVIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-K---LLHQIET----LANLR 175 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~-~---~~~~~~~----~~~~~ 175 (415)
-..|.+|++..|+....- +....-+.|.|+|+++++. .+++|.+|..... . .++.+.. .....
T Consensus 166 -~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 166 -TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred -CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 258999999987654332 3467788999999998876 7999999998663 2 2333321 22334
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcC--CcceEE---EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--C
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--D 248 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~ 248 (415)
+..++..+++|++|.++......|.++... +..+.. ...+........|++.|++|+++..++..|.+|... +
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 677888899999998765545556654332 222222 223444467899999999999999887668888654 4
Q ss_pred CcEEEEEecCCCcccEEEEEeC
Q 014977 249 GTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~s 270 (415)
|++-..... .......|+.|.
T Consensus 325 G~L~~~~~~-~~~p~Pvcv~f~ 345 (346)
T COG2706 325 GRLTLLGRY-AVVPEPVCVKFL 345 (346)
T ss_pred ceEEecccc-cCCCCcEEEEEc
Confidence 544322221 133345566664
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=2.8e-06 Score=75.03 Aligned_cols=193 Identities=10% Similarity=-0.037 Sum_probs=123.8
Q ss_pred EEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc-CCeEEEE-eCCeEEEEEcCCceeeeEE
Q 014977 92 EMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV-LEHKIYVYSFVDLKLLHQI 168 (415)
Q Consensus 92 ~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~-~d~~i~iwd~~~~~~~~~~ 168 (415)
...|.+ ++.++++.-.. +.|..|+..+++. ..+.... ...+.+. +++.+++ ..+.+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence 356776 66666665554 8999999877654 3344334 7777887 7777777 7777888899888665444
Q ss_pred ec--cC-CCcceEEEecCCCceEEEEeCCcc-------CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCC
Q 014977 169 ET--LA-NLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STR 237 (415)
Q Consensus 169 ~~--~~-~~~~~~~~~~~~~~~~l~~~g~~d-------g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~d 237 (415)
.. .. .......+..+++|.+.++..... |.|..++..+ .+..+...-...+.|+|+|+++.|+.+ +..
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeeccccc
Confidence 43 12 334666788888887655422111 4566555553 344444445667899999999977654 555
Q ss_pred CcEEEEEECCCC-c-E--EEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 238 GTLIRIFNTVDG-T-R--LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 238 g~~I~vwd~~~~-~-~--~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+. |..+++... . . ...+ ......+..-.+++..+|++.++....+.|.+++.+ ++
T Consensus 156 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 156 GR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp TE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred ce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 66 999988532 2 1 1222 111122347889999999988888888999999976 54
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.01 E-value=7.1e-07 Score=84.22 Aligned_cols=221 Identities=16% Similarity=0.081 Sum_probs=131.6
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
+..+++++ ++.+.-+|..+++.+....+..... ...... ++.+++.. .+ +.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~--~~p~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS--GGVGAD-GGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc--cceEEc-CCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCc
Confidence 55666766 8899999998888777766533211 112222 34444443 33 899999999999988877554
Q ss_pred ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce---EEEecCCCceEEEEeCCccCeEEEEE-cCCcc
Q 014977 135 DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVRIEH-FGLNM 208 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~ 208 (415)
.+.+.-...++.+++ .++.++.||.++++.+..+......... ...... ++ .+++ +..++.+...+ .+++.
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~-~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLV-GFAGGKLVALDLQTGQP 212 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEE-ECCCCEEEEEEccCCCE
Confidence 443322223445555 6899999999999988776543321110 000111 12 2333 55677776644 34544
Q ss_pred eEEEecCc----cc---eEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 209 IKLINAHD----SH---IACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 209 ~~~~~~~~----~~---i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
+....... .. ...+.-+| .+..+++++.+|. ++.||..+|+.+...... ...... .++..|+++
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~ 285 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVT 285 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEEEE
Confidence 43322110 00 00011111 3457778888999 999999999987766531 111222 246678888
Q ss_pred eCCCeEEEEEceeccc
Q 014977 280 SDKGTVHIFSLRVRVV 295 (415)
Q Consensus 280 s~dg~i~vwd~~~~~~ 295 (415)
+.||.|+.+|..+++.
T Consensus 286 ~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 286 DADGVVVALDRRSGSE 301 (377)
T ss_pred CCCCeEEEEECCCCcE
Confidence 8999999999988863
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=5.4e-07 Score=85.43 Aligned_cols=195 Identities=8% Similarity=-0.016 Sum_probs=121.6
Q ss_pred eEEEEeeeCCeEE-EEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCC
Q 014977 89 RIVEMLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD 161 (415)
Q Consensus 89 ~~~~~~~~~~~~~-l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~ 161 (415)
......|+|++.. ++..+.+. ....|.++|+.+++........+......|+|||..++ .+..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5677889998853 33222210 12689999998887766555666677788999997766 246799999877
Q ss_pred ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC--
Q 014977 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-- 237 (415)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-- 237 (415)
++.. .+..... ......++|+++.|+++....+. |++.+..+...+.+...... ...|+|||++|+.....
T Consensus 267 g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence 7643 3432222 12233566677777776544454 55555555555444322222 24899999988776543
Q ss_pred -----C-cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977 238 -----G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV 294 (415)
Q Consensus 238 -----g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~ 294 (415)
+ ..|.+.|+.+++.. .+... .......|+|||+.|+..+.++ .+.+.+++...
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred cccCCCCcEEEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 2 23889999887653 44432 1233588999999888666543 36666665543
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=7e-06 Score=72.52 Aligned_cols=212 Identities=14% Similarity=0.081 Sum_probs=135.8
Q ss_pred EEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 49 SVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 49 ~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
++.|.+ ++.++++.. .+.|..|+.++..... ..+ .. ...+.+. +++.++++.. +.+.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence 578998 666666665 8889999988754433 222 22 5556666 7787777765 556666988886
Q ss_pred EEEEEEc------cCceeEEEEcCCeEEEEe---------C--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 126 CIGEFAF------RSDVRSVKLSRDRIVVVL---------E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 126 ~~~~~~~------~~~i~~l~~~~~~~~~~~---------d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
....... ....+++++.++|.+.+. . +.|+.++.. ++....... .. ....+.+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~--~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LG--FPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ES--SEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cc--cccceEECCcchh
Confidence 5544442 346789999999987771 1 567888866 554433332 22 3445556666766
Q ss_pred EEEeCCccCeEEEEEcC--Ccc---eEEE-ecCc--cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977 189 LACPGLQRGQVRIEHFG--LNM---IKLI-NAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~--~~~---~~~~-~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (415)
|+++.+..+.|..++.. ... ...+ .... +..-.+++..+|++.++....+. |.++|.. |+.+..+...
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p-- 223 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP-- 223 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--
Confidence 66556677777775543 221 1222 2222 34778999999998887777888 9999975 9998888864
Q ss_pred cccEEEEEe-CCCCCEEEEEe
Q 014977 261 RAEIYSIAL-SPNVQWLAVAS 280 (415)
Q Consensus 261 ~~~v~~l~~-spdg~~l~s~s 280 (415)
...+++++| -++.+.|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 247999999 46766665443
No 275
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=2.8e-06 Score=74.85 Aligned_cols=238 Identities=17% Similarity=0.160 Sum_probs=149.2
Q ss_pred ceEEEEEeC-CCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 46 ~V~~l~~sp-~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....++.+| ....++.+. .....+||..+.+............-.-.-.|++++.+|.+...|..-..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 555666777 44577899988766554433222222234679999999998887755567899999988
Q ss_pred -CCCEEEEEE-ccCceeEEEEcCCeEEE-Ee--------------------CCeEEEEEcCCceeeeEEec--cCCCcce
Q 014977 123 -QSRCIGEFA-FRSDVRSVKLSRDRIVV-VL--------------------EHKIYVYSFVDLKLLHQIET--LANLRGL 177 (415)
Q Consensus 123 -~~~~~~~~~-~~~~i~~l~~~~~~~~~-~~--------------------d~~i~iwd~~~~~~~~~~~~--~~~~~~~ 177 (415)
+.+.+.++. +.-.-..+.+.||+..+ +. +-.+...|..+|+.+.+... ..+...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 557777776 66667788899999443 32 23455566677777766443 2233355
Q ss_pred EEEecCCCceEEEEeCCccCe-------EEEEEcCCcceEEEe-------cCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQ-------VRIEHFGLNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~-------v~i~~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
.-++.++++..++. .-..|. |.++.. ++.+..+. .-...+-+|+++++|.++++.+-.|..+.+
T Consensus 166 RHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEE-EecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 56666666544322 211111 111221 12222222 234678999999999988887776665999
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
||..+++.+....- ..+..++-.+++ ++++.+ .|. ++.+...
T Consensus 244 ~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~~ 285 (305)
T PF07433_consen 244 WDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSPD 285 (305)
T ss_pred EECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccCc
Confidence 99999998876653 246677777776 555443 453 4444433
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=1.3e-07 Score=80.56 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=116.3
Q ss_pred CeEEEEECCCCCEEE--EEE--ccCceeEEEEcC---CeE-EEE---eCCeEEEEEcCCceeeeEEecc---CCCc-ceE
Q 014977 114 TKVIIWDDHQSRCIG--EFA--FRSDVRSVKLSR---DRI-VVV---LEHKIYVYSFVDLKLLHQIETL---ANLR-GLC 178 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~--~~~--~~~~i~~l~~~~---~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~---~~~~-~~~ 178 (415)
|.+.+|++...+.+. +++ ....+..|.|.. ++. .++ ..|.|.+|..........+.+- .-.. ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 677777766654433 222 344566666642 333 122 6788888876543333333221 1111 234
Q ss_pred EEecCCCceEEEEeCCccCeEEE-EE--cCCcceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECC-CCcEEE
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRI-EH--FGLNMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQ 253 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i-~~--~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~ 253 (415)
++.+++.+..+++ +..+|.+.+ +. ...+.++..+.|+.+++...|+. +.+++.+|+.|+. +..||++ .++.+.
T Consensus 126 slD~~~~~~~i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 126 SLDISTSGTKIFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIW 203 (339)
T ss_pred EEEeeccCceEEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcceee
Confidence 5555555555554 667888875 32 23355667899999999999985 3468999999999 9999998 444443
Q ss_pred E-EecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceeccc
Q 014977 254 E-VRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 254 ~-~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
. .+. |...|.+|.-+| .+.+|++|+.|..|++||.++-.+
T Consensus 204 ~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 204 HNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eccee--eecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 3 233 677888888775 678999999999999999996554
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=6.8e-07 Score=82.64 Aligned_cols=236 Identities=9% Similarity=0.077 Sum_probs=150.1
Q ss_pred CceEEEEEeCCCCEEEEEe---C---------CcEEEEEccCCceeEEEeccCCCeeE-EEEeeeCCeEEEEecCCCCCC
Q 014977 45 IELISVSWNQDYGCFAAGT---S---------CGFRIYNCEPFKETFRRDLKSGGFRI-VEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~---d---------~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~~ 111 (415)
..|.-+.|||..++|++-+ . ..+.|||+.++............... .-+.|+-|..++|--..
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence 3488999999999999754 1 46899999987654332221122222 23568888888877655
Q ss_pred CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----e---CCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
+.|.||+..+-.++..-. -...|....|+|.+.+++ . -..+.+..+.+++.+++-..+. +.-+.+.|
T Consensus 326 --~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhW 401 (698)
T KOG2314|consen 326 --NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHW 401 (698)
T ss_pred --ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEe
Confidence 689999866533322222 357789999999999988 1 2457777777777766554433 24567777
Q ss_pred CCCceEEEEeC---------CccCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCC-C
Q 014977 183 HSSTSVLACPG---------LQRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVD-G 249 (415)
Q Consensus 183 ~~~~~~l~~~g---------~~dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~-~ 249 (415)
..+|.+|++-- +.-..+.|+..+.+.+.. ...-...|...+|-|.|..+++-+. ....+.+|.+++ .
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 77777775411 011112232222222111 1223567788899999987665443 233388998873 2
Q ss_pred ---cEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeEEEEEcee
Q 014977 250 ---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRV 292 (415)
Q Consensus 250 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i~vwd~~~ 292 (415)
+++..+. ....+.+.|+|.|++++.+. ..|.+.++|..-
T Consensus 482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2333443 23568899999999988764 467899999885
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=8e-07 Score=84.28 Aligned_cols=198 Identities=10% Similarity=0.011 Sum_probs=120.1
Q ss_pred ceEEEEEeCCCCE-EEEEe-C---CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEE-ecCCCCCCCCCeEEEE
Q 014977 46 ELISVSWNQDYGC-FAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDNSQYPPTKVIIW 119 (415)
Q Consensus 46 ~V~~l~~sp~g~~-la~g~-d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~~~~~~i~vw 119 (415)
.+....|+|||+. ++..+ + ..|.++|+.+++..... ..........|+||+..++ +...+ .+..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~---g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPK---GQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccC---CCcEEEEE
Confidence 6788999999985 66544 3 34777888775543322 2233344566899885443 33222 13688899
Q ss_pred ECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCC----eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEH----KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
|+.+++......+........|+|||+.++ .+. .|+++|+.+++..+.... .. .. ..++|++..|+++.
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~--~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NN--SSVSTYKNYIVYSS 337 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cC--ceECCCCCEEEEEE
Confidence 988876544333444345668999998777 332 799999987765433321 11 11 25667777787765
Q ss_pred Ccc--------CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCc--EEEEEECCCCcEEEEEe
Q 014977 194 LQR--------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--LIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 194 ~~d--------g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--~I~vwd~~~~~~~~~~~ 256 (415)
... ..|.+.+..+...+.+.... ......|+|||+.|+....++. .+.+.++ +|.....+.
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLFP 408 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEee
Confidence 443 25566555555566665432 3346889999998776654432 2666776 444444454
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.91 E-value=5.7e-07 Score=83.74 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=129.2
Q ss_pred CCCCEEEEEe-CCcEEEEEccCCceeEEEec-cCCCeeEEEEee------e--------------CCeEEEEecCCCCCC
Q 014977 54 QDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLF------R--------------CNILALVGAGDNSQY 111 (415)
Q Consensus 54 p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~------~--------------~~~~~l~s~~~d~~~ 111 (415)
|-+.++|... ||.++||+...++......- ..-....++..| + .+...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~--- 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ--- 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence 4567888888 99999999987554332211 011122222222 1 233455555554
Q ss_pred CCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
|.|.+|++..|+....+. |.+.|.++.++.+-..+. .|..+..|+....+.+..+..... ....+.+.|+
T Consensus 80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D 155 (541)
T KOG4547|consen 80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPD 155 (541)
T ss_pred --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCC
Confidence 999999999999988887 889999999888766655 689999999999988888877666 4444555556
Q ss_pred ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCC-----CCEEEEEe-CCCcEEEEEECCC
Q 014977 186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLD-----GLLLATAS-TRGTLIRIFNTVD 248 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~-----g~~l~s~s-~dg~~I~vwd~~~ 248 (415)
+..+++ + .++|++|+.. ++.+..+.+|.++|.++.|--+ |.++.++. .+.. |.+|-+..
T Consensus 156 ~~~l~~-a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLT-A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred CCEEEe-c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 777765 3 4789997765 5678889999999999999876 66666543 3444 78886543
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=3.5e-08 Score=87.54 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=104.1
Q ss_pred EEEEcCCeEEEE---eCCeEEEEEcCCc----eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE
Q 014977 138 SVKLSRDRIVVV---LEHKIYVYSFVDL----KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK 210 (415)
Q Consensus 138 ~l~~~~~~~~~~---~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~ 210 (415)
.+..++.+++++ .+....++++... +.+........+..+..+..+.. ..++-..++...+.+|.....+..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeecccccCcc
Confidence 344556666666 3444445555322 23333333333333333333322 222222334455555655545566
Q ss_pred EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 211 LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
.+-+|-..++.++|+||+++|+++..|.. |+|-....--.+..+.-+ |..-|..++.-++ +.|++++.|++|++||+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 67799999999999999999999999999 999887766666666544 8888999998654 66899999999999999
Q ss_pred eecccCC
Q 014977 291 RVRVVGE 297 (415)
Q Consensus 291 ~~~~~~~ 297 (415)
.+++...
T Consensus 223 ~sgk~L~ 229 (390)
T KOG3914|consen 223 TSGKLLD 229 (390)
T ss_pred ccCCccc
Confidence 9999763
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=3.7e-08 Score=84.57 Aligned_cols=295 Identities=15% Similarity=0.174 Sum_probs=165.2
Q ss_pred cCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc---eeEEEeccCCCe------------eEEEEee
Q 014977 32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK---ETFRRDLKSGGF------------RIVEMLF 95 (415)
Q Consensus 32 ~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~---~~~~~~~~~~~~------------~~~~~~~ 95 (415)
|+....-......+.|+++.|...|.+|++|. .|.|.+|.-+... -.+...|+.|.. .+..+.|
T Consensus 14 fgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 14 FGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred hcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 33333333455677899999999999999999 8899999876432 111112222221 2334444
Q ss_pred eC---CeEEEEecCCCCCCCCCeEEEEECCCCCE--EEEEEc--------cCceeEEEEcCCeEEEE----eCCeEEEEE
Q 014977 96 RC---NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGEFAF--------RSDVRSVKLSRDRIVVV----LEHKIYVYS 158 (415)
Q Consensus 96 ~~---~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~~~~--------~~~i~~l~~~~~~~~~~----~d~~i~iwd 158 (415)
-. ...+|+++.+ .+|++|.+..... +.+-.. .+++++ +....+- .|..|....
T Consensus 94 ~~~t~r~hFLlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s----~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 94 FDDTGRNHFLLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS----TKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred ecCCCcceEEEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCC----HHHhhcccccccceEEEecc
Confidence 33 2356666554 8999999765422 211111 111111 1111111 111221111
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCc-----cceEEEEeCCCC-
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHD-----SHIACFTLTLDG- 228 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~-----~~i~~l~~sp~g- 228 (415)
. .+....++..+..++++.+...++++ .|=.|.+|..... .+..++.|. .-|++..|+|..
T Consensus 164 ----~---rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 164 ----C---RVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred ----c---eeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 1 11122233356677777777777652 5666777876541 233344553 357889999964
Q ss_pred CEEEEEeCCCcEEEEEECCCCc------EEEE--EecCC------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 229 LLLATASTRGTLIRIFNTVDGT------RLQE--VRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~~~~------~~~~--~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
..+...+..|. |++-|++... .+.. +.+-. -...|..+.|+++|++|++-.. -+|+|||++..+
T Consensus 235 n~fmYSsSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 235 NVFMYSSSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred ceEEEecCCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 45667777899 9999997321 1111 11100 1246888999999999987654 469999998766
Q ss_pred cCC-CCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CE
Q 014977 295 VGE-DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT 372 (415)
Q Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 372 (415)
... ++..| -.+...+...+..+-.|.+|. |.|+.+ ..
T Consensus 313 ~pikTi~~h---------------------------------~~l~~~l~d~YEnDaifdkFe--------isfSgd~~~ 351 (460)
T COG5170 313 NPIKTIPMH---------------------------------CDLMDELNDVYENDAIFDKFE--------ISFSGDDKH 351 (460)
T ss_pred CCceeechH---------------------------------HHHHHHHHhhhhccceeeeEE--------EEecCCccc
Confidence 432 21111 011112334555555566665 567766 66
Q ss_pred EEEEEeCCcEEEEEEe
Q 014977 373 VVIVSMDGSFYRCSFD 388 (415)
Q Consensus 373 i~~~~~dg~~~~~~~~ 388 (415)
+++++....+.+|-.+
T Consensus 352 v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 352 VLSGSYSNNFGIYPTD 367 (460)
T ss_pred ccccccccceeeeccc
Confidence 7777777777777644
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.4e-07 Score=89.44 Aligned_cols=229 Identities=11% Similarity=0.019 Sum_probs=147.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...||.+.|.-+.|+.+.+.|.+.. +|-|.||-+-.+...-...-......+.+++|..+|..++-.-.| |.|.
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----GavI 140 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED-----GAVI 140 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CCEE
Confidence 5789999999999999999999988 999999988654332222222456678899999998877766555 8888
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-------eeeeEEec----cCCCcceEEEe-
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-------KLLHQIET----LANLRGLCCLS- 181 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-------~~~~~~~~----~~~~~~~~~~~- 181 (415)
|=.++..+ +.--. .......+.|++|...+. .+|.+++||.+.. .+.....+ ....+...++.
T Consensus 141 VGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 141 VGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred EEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 87654433 22211 223344688999987766 7899999996421 11111111 01111111111
Q ss_pred ----c-CCCceEEEEeCCccCeEEEE-EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCc--------EEEEEECC
Q 014977 182 ----H-HSSTSVLACPGLQRGQVRIE-HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------LIRIFNTV 247 (415)
Q Consensus 182 ----~-~~~~~~l~~~g~~dg~v~i~-~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------~I~vwd~~ 247 (415)
+ -|+...+++ +..+|.+.|- ..+......+ .....+..+.|+++|..||+++.+.. .|.+|. .
T Consensus 220 g~~~~v~pdrP~lav-cy~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p 296 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAV-CYANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-P 296 (1189)
T ss_pred CccccCCCCCCEEEE-EEcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-c
Confidence 1 235556665 6688888883 2222222222 23377889999999999999987531 266664 4
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977 248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (415)
-|+.+.+++. ....|++++|-..|-.+|.
T Consensus 297 ~G~i~gtlkv--pg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 297 YGHIVGTLKV--PGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred chhheEEEec--CCceeeeeEEcCCceEEEE
Confidence 6778888886 5567899988766654443
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=3.1e-08 Score=102.54 Aligned_cols=192 Identities=11% Similarity=0.189 Sum_probs=141.8
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+-..|.++.=+|...+.++|+ ||.+++|.....+.+..... .+...+..+.|+.+|..+..+..| |.+.+|..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccCCceeeeccC-----Cceeeccc
Confidence 445678888889889999999 99999999988777665544 445888999999998888777776 99999996
Q ss_pred CCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCC--c-eeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD--L-KLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
. .++....+ |.....++.|-.....-+ .++.+.+||.-- + .++. ..|.. ...++.+.|+..++++ |
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~--gaT~l~~~P~~qllis-g 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG--GATVLAYAPKHQLLIS-G 2354 (2439)
T ss_pred C-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCC--CceEEEEcCcceEEEe-c
Confidence 6 44444455 788888888876333333 578999999632 1 2333 56666 4555666666666665 8
Q ss_pred CccCeEEEEEcCCcce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 194 LQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+.+|.|++|+.+.+.+ +.++. ++ ...++++|+..|. |+||++..-..++.+..
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 8999999999876543 23332 44 5568999999999 99999988877777764
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=6.5e-07 Score=75.54 Aligned_cols=239 Identities=13% Similarity=0.080 Sum_probs=144.2
Q ss_pred EEEEEeC-----CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEE
Q 014977 48 ISVSWNQ-----DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 48 ~~l~~sp-----~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
..+.|-| ...+||.|+ .|.+.+|.+.+.+..... ...+...+.-..-.. ...-+.-++.| .++++.+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~~ 144 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASND-----HTGKTMV 144 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCC-----cceeEEE
Confidence 3455555 234788887 999999999865433322 112222111111111 11112223333 6777777
Q ss_pred CCCCCEEEEEEc-cCceeEEEEcCCeEEEE---eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 121 DHQSRCIGEFAF-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 121 ~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
++-+........ .-.+.++++++|+++.+ ....|..|.+.. ++.+..+..........+.+++.....+|+ +..
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Q 223 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQ 223 (344)
T ss_pred EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Eec
Confidence 554432222221 13488999999999988 567788888854 333333333333335566677766667765 789
Q ss_pred cCeEEEEEcCCcc------eEEEecCccceEEEEeCCCCC--EEEEEeCCCcEEEEEECCCCcEEEEEecCC-----C-c
Q 014977 196 RGQVRIEHFGLNM------IKLINAHDSHIACFTLTLDGL--LLATASTRGTLIRIFNTVDGTRLQEVRRGV-----D-R 261 (415)
Q Consensus 196 dg~v~i~~~~~~~------~~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----~-~ 261 (415)
||++.||+.+.-. ..+-..|.+.+..+.|++.|. +|...-.-+. +.+.|+++++..+.+.... | .
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~t 302 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNT 302 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccccc
Confidence 9999999876522 222345899999999998775 4555555566 9999999987655544311 1 1
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
..|..-.|+.++.-+.+.+++. +.=|++.+..+
T Consensus 303 q~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 303 QHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred cccccccccCCCcccccccchh-hheeeccccce
Confidence 3477788888887777776654 66677766553
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.85 E-value=1.7e-06 Score=78.69 Aligned_cols=185 Identities=13% Similarity=0.138 Sum_probs=129.3
Q ss_pred eCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc----------cCceeEEE----EcC-CeEEEE--eCCeEEEEE
Q 014977 96 RCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF----------RSDVRSVK----LSR-DRIVVV--LEHKIYVYS 158 (415)
Q Consensus 96 ~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~----------~~~i~~l~----~~~-~~~~~~--~d~~i~iwd 158 (415)
+.+|..++-... |.|.++|..+....+ +.- ...+.-+. |++ +|.+++ ..|+..|.+
T Consensus 275 nsDGkrIvFq~~------GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVFQNA------GDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred CCCCcEEEEecC------CcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 456665555443 899999977654322 210 00111111 221 344444 788888888
Q ss_pred cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
...+-.++. ++...+....+..++++ ++. |..|| .+-|++..+..++.+...-+.|.++..+++|++++.+...
T Consensus 348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~--~vi-gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 348 PWDGYSIQV--GKKGGVRYRRIQVDPEG--DVI-GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred CCCCeeEEc--CCCCceEEEEEccCCcc--eEE-eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence 655544432 23333556667777664 333 55777 7888999999999999999999999999999999999988
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC----eEEEEEceeccc
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRVV 295 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~~~ 295 (415)
.. |.+.|+.+|.....-+. ..+-|+.+.|+|++++||-+--+| .|+++|+..++-
T Consensus 423 ~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 423 FE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred eE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 88 99999999987533332 566899999999999999776665 699999998764
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.84 E-value=2.7e-06 Score=78.00 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
-+.|+-+..++|--....+.|+++. ...+.-...+ ....+..+.++|. +..++.-.-...-.+..+++|.+..+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 5667777666665456677888852 1111111111 2356777778775 223333222222245899999998887
Q ss_pred EEEEEE-ccCceeEEEEcCCeEEEE--------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 126 CIGEFA-FRSDVRSVKLSRDRIVVV--------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 126 ~~~~~~-~~~~i~~l~~~~~~~~~~--------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
.+.+.. +...=..+.|++.|.+++ ....++++++....+- ....-..++.-.+|.+..++ +.+
T Consensus 214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~-F~v 291 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSR-FAV 291 (561)
T ss_pred eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCc-eeE
Confidence 777666 455556788998887776 1367889988743322 22233455555666666554 334
Q ss_pred EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEE-EEecCCCcccEEE
Q 014977 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQ-EVRRGVDRAEIYS 266 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~-~~~~~~~~~~v~~ 266 (415)
++|..+-.+.+++.++.....+ ....=+.+.|+|.+++++.++-| |. |.+||....-... .+.+ ....-
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~ 364 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY 364 (561)
T ss_pred EecccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence 4577888888888888744433 34455678899999999987765 56 9999976544333 4544 23456
Q ss_pred EEeCCCCCEEEEEeC------CCeEEEEEceeccc
Q 014977 267 IALSPNVQWLAVASD------KGTVHIFSLRVRVV 295 (415)
Q Consensus 267 l~~spdg~~l~s~s~------dg~i~vwd~~~~~~ 295 (415)
+.|+||++++.+... |..|.|||+.....
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 789999999887653 77899999987653
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=2.4e-06 Score=75.04 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=131.0
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeE-EEEc
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS-VKLS 142 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~-l~~~ 142 (415)
++.|..||..+++.+....+..............++.+++.. .+ +.|..||..+|+.+..+.....+.. ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence 577888999888888877663222222322333445555553 33 9999999999999999885444333 2334
Q ss_pred CCeEEEE-eCCeEEEEEcCCceeeeEE-eccCCCc---ceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEecCc
Q 014977 143 RDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLR---GLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLINAHD 216 (415)
Q Consensus 143 ~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~~~~ 216 (415)
.+..++. .++.++.+|..+|+.+... ....... ......... ..+++ +..++.|...+ .+++.+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYV-GTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEE-EETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec--CEEEE-EeccCcEEEEecCCCcEEEEeecCC
Confidence 4444444 5789999999999998884 3321111 122233332 23333 33477787755 5566666665533
Q ss_pred cc----------e-EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE
Q 014977 217 SH----------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285 (415)
Q Consensus 217 ~~----------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 285 (415)
.. + ..+.+. ++ .++.++.++..+.+ |+.+++.+..... . .+..+ ...++..|+.++.++.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~--~--~~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKPI--S--GIYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEECS--S---ECEC-EECCCTEEEEEETTTEE
T ss_pred CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEecC--C--CccCC-ceeeCCEEEEEeCCCEE
Confidence 22 1 223333 45 67777777752555 9999997643321 2 23221 34677888888899999
Q ss_pred EEEEceeccc
Q 014977 286 HIFSLRVRVV 295 (415)
Q Consensus 286 ~vwd~~~~~~ 295 (415)
..||+++++.
T Consensus 225 ~~~d~~tG~~ 234 (238)
T PF13360_consen 225 YALDLKTGKV 234 (238)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCCE
Confidence 9999999874
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=2.7e-07 Score=88.41 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=156.6
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC------------CeEEEEecCCCCCCCCC
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC------------NILALVGAGDNSQYPPT 114 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~s~~~d~~~~~~ 114 (415)
-.++.|+|.| ++|.|+...|.|-|..+.+.+.... .|...+..+.|.| ....++++... |
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~-----G 89 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS-----G 89 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEecccc-----C
Confidence 6678888866 8899998889999988766555443 5667777777764 12456666666 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcC---CeE--EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC-
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR---DRI--VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS- 185 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~---~~~--~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (415)
.|.+||...+..+..+. +..++.+++|-+ +.+ +++ ....+.+|+..+|+.......... ...+|..+|-
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~--iLs~f~~DPfd 167 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE--ILSCFRVDPFD 167 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc--ceeeeeeCCCC
Confidence 99999999998888888 678899999865 232 222 678999999999998877765554 3334544442
Q ss_pred ceEEEEeCCccCeEEE-EEcCC-------cceEEEecCcc-------------------------ceEEEEeCCCCCEEE
Q 014977 186 TSVLACPGLQRGQVRI-EHFGL-------NMIKLINAHDS-------------------------HIACFTLTLDGLLLA 232 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~l~~sp~g~~l~ 232 (415)
.+.+...| ..|.+.+ .+... +..+.-..|.. ....++|+|.-+-++
T Consensus 168 ~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 168 SRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred cceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 22333334 4666665 33221 22222222221 011356788665555
Q ss_pred EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCeEEEEEceecc
Q 014977 233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~ 294 (415)
-...... +.|+|++-..++..+.- ..+.+.-+.+-|+++ .|++.-.||.+.+|-.+.-.
T Consensus 247 fi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 247 FITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 5555667 99999998888887765 444556677777654 68899999999999876643
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2e-08 Score=92.39 Aligned_cols=203 Identities=15% Similarity=0.180 Sum_probs=142.8
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-------CCEEEEEE-ccCceeEEEEcCCeEEEE-eCCe
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHK 153 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-------~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~ 153 (415)
+.+|...+..+.--.+..-+++++.| ++|++|.++. ..+..+++ |+.+|.++.|-.+.+.++ .|+.
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 34565566555555566667788887 9999999753 23555555 899999999999998888 8999
Q ss_pred EEEEEcCCceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEe-----cCccceEEEEeC
Q 014977 154 IYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLIN-----AHDSHIACFTLT 225 (415)
Q Consensus 154 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~-----~~~~~i~~l~~s 225 (415)
|++||.--++.+.++... ....+.+..-++-+..++++.++...+|++.+.+ .+-+..++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998777766544221 1222333333343444555545788899995543 33333333 345668899999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE-EEceecc
Q 014977 226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI-FSLRVRV 294 (415)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v-wd~~~~~ 294 (415)
+.|+.++.+=.+|. |.+.|.++|+.+..++. .......++ .|..+.|+....|.++.| |..-.+.
T Consensus 886 ~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred cCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 99999999999999 99999999999887765 444455554 367778888888888888 8765543
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=5.6e-06 Score=87.21 Aligned_cols=199 Identities=9% Similarity=0.005 Sum_probs=126.1
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEe-------ccCC-------CeeEEEEeeeC-CeEEEEecCCC
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRD-------LKSG-------GFRIVEMLFRC-NILALVGAGDN 108 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~-~~~~l~s~~~d 108 (415)
....+++.+++..|+++. .+.|+++|..+........ +.++ -.....+++++ ++.++++...+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 457899999888777666 6778999886533211100 0000 01234678888 66676776655
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE---------------ccCceeEEEEcCCeEE--EE--eCCeEEEEEcCCceeeeEEe
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFA---------------FRSDVRSVKLSRDRIV--VV--LEHKIYVYSFVDLKLLHQIE 169 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~--~~--~d~~i~iwd~~~~~~~~~~~ 169 (415)
+.|++||..++....... .-.....|+++|++.. ++ .++.|++||+.++.......
T Consensus 705 -----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 705 -----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred -----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 899999987765432110 0123567999998753 33 57899999998765321110
Q ss_pred cc-------------CC------CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--------------c
Q 014977 170 TL-------------AN------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--------------D 216 (415)
Q Consensus 170 ~~-------------~~------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--------------~ 216 (415)
+. .. ......+.+++++.++++ ...++.|++|+.....+..+.+. -
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA-Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA-DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE-ECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00 00 002234555666665544 56788999988876655544332 1
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
.....|+++++|+++++-+.++. |++||+.+++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence 24678999999998888888888 99999988865
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=8.5e-06 Score=77.31 Aligned_cols=220 Identities=11% Similarity=0.048 Sum_probs=122.4
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCc
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD 135 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~ 135 (415)
..++++. ++.+.-+|.++++...+..+... . ....... ++.+++... + +.|..+|.++|+.+..+....+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-A-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCc-e-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCCCC
Confidence 3455566 88899999988887776654221 1 1111112 444555433 3 8999999999999988874322
Q ss_pred e------eEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCC--cc---e--EEEecC-CCceEEEEeCCccCeEE
Q 014977 136 V------RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RG---L--CCLSHH-SSTSVLACPGLQRGQVR 200 (415)
Q Consensus 136 i------~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~---~--~~~~~~-~~~~~l~~~g~~dg~v~ 200 (415)
. ..-....+..++. .++.+..+|..+++.+......... .. . ....|- .++. +++ ++.+|.+.
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~-~~~~g~l~ 269 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYA-LAYNGNLV 269 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-EEE-EEcCCeEE
Confidence 1 1112222333333 6888999999998876654321110 00 0 000110 0222 323 33566666
Q ss_pred EEE-cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
..+ .+++.+..... .....+. ..+..|+.++.+|. +..+|..+|+.+........ ....+... .+.+|+.+
T Consensus 270 ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 270 ALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVG 341 (394)
T ss_pred EEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEE
Confidence 533 34444333221 1111122 24556777888999 99999999987755432101 11111222 24577889
Q ss_pred eCCCeEEEEEceeccc
Q 014977 280 SDKGTVHIFSLRVRVV 295 (415)
Q Consensus 280 s~dg~i~vwd~~~~~~ 295 (415)
+.||.|++.|.++++.
T Consensus 342 ~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 342 DSEGYLHWINREDGRF 357 (394)
T ss_pred eCCCEEEEEECCCCCE
Confidence 9999999999988864
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.7e-07 Score=84.39 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=165.8
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCeEEEEecCC-CCCCCCCeEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVI 117 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~~~~i~ 117 (415)
--|.+.|+.+.-. -.+++.+++ ||.++.|.-.. ....+...+..|-..+..++.+-++.++.+.+. | ..++
T Consensus 6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~K 79 (558)
T KOG0882|consen 6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD-----HSVK 79 (558)
T ss_pred hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc-----ccee
Confidence 3477778777554 356888888 99999998765 344455556667677777888888988888766 6 9999
Q ss_pred EEECCCCCEEEEEEccCceeEEEE--cCC-e--EEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCce
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKL--SRD-R--IVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~--~~~-~--~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
++|+++-..+.-++.......+.| ++. - .+.+ .++.+.++|-.... ....-..|..++....+.+..+
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-- 157 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-- 157 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--
Confidence 999887665544442222222222 222 1 2222 68999999964332 2233355677666666666554
Q ss_pred EEEEeCCccCeEEEEEcCCc---c-------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 188 VLACPGLQRGQVRIEHFGLN---M-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~---~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
.++ +....|.|.-|...+. + +..+........++.|+|+|..+.+-+.|.. |+++++++|+.
T Consensus 158 s~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGkl 235 (558)
T KOG0882|consen 158 SAV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKL 235 (558)
T ss_pred cee-eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchh
Confidence 333 4667788988987740 0 1111233556789999999999999999999 99999999876
Q ss_pred EEEEecC-------------------------------CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 252 LQEVRRG-------------------------------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 252 ~~~~~~~-------------------------------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
++.+... .....-+.+.|...|++|+-++-=| |+|.++.++....
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 6544320 0112335578899999999999888 9999999988653
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=1.3e-05 Score=67.95 Aligned_cols=188 Identities=12% Similarity=0.000 Sum_probs=118.3
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCce---eEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCC
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDV---RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i---~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
..|+.++.- |...+|...+.+....+- +...| ...+-+.-...++ .|.+++++++.-+.....+ |..
T Consensus 85 ~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 85 VTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ecc
Confidence 456666655 999999987655433222 22222 2223333334445 6888888887544322222 222
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEE--EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKL--INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
.+....++.+++++++++.|. ...|..+..+. ..+.. .......-.+..|+.....+|++..||. +.|||++..
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcCCCceEEEecC-CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEeccc
Confidence 245667777888889998774 55565544433 22222 2223344457889999999999999999 999999875
Q ss_pred cEEEEE---ecCCCcccEEEEEeCCCCC--EEEEEeCCCeEEEEEceecccC
Q 014977 250 TRLQEV---RRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 250 ~~~~~~---~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
...... ....|.+.+..+.|++-|. +|...-.-+.+.+-|+++++.-
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 433222 2234788999999998664 4445555678999999998753
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.64 E-value=2.8e-05 Score=73.76 Aligned_cols=223 Identities=12% Similarity=0.064 Sum_probs=127.2
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------eE-EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------RI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+..+.+++ ++.+.-+|.++++...+..+..... .+ ...... ++.+++.. .+ +.+..+|.++|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~-~~-----g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS-EK-----GQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc-CC-----CEEEEEECCCCC
Confidence 44555555 8888888988888777766532110 00 001122 33444443 33 899999999999
Q ss_pred EEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce---EEEecCCCceEEEEeCCccCeEE
Q 014977 126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVR 200 (415)
Q Consensus 126 ~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~v~ 200 (415)
.+.+......+.+--.-.++.+++ .++.++.+|.++|+.+..+......... ..-... ++. +++ +..+|.+.
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~-v~~-~~~~g~v~ 218 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG-AIV-GGDNGRVS 218 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE-EEE-EcCCCEEE
Confidence 998887544443221112455555 6889999999999988777543211000 000011 122 223 34567666
Q ss_pred E-EEcCCcceEEEecCc----c---ceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 201 I-EHFGLNMIKLINAHD----S---HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 201 i-~~~~~~~~~~~~~~~----~---~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
. +..+++.+....... . ....+.-+| .+..++.++.+|. +..+|..+|+.+...... ....+.
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~-- 291 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA-- 291 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE--
Confidence 5 444444433322110 0 011111222 2446777778898 999999999987665431 111222
Q ss_pred CCCCEEEEEeCCCeEEEEEceeccc
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.++..|+.++.+|.+..+|.++++.
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcE
Confidence 2456788888999999999988863
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=1.2e-07 Score=57.26 Aligned_cols=39 Identities=33% Similarity=0.561 Sum_probs=36.0
Q ss_pred CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
|+++..+.+ |...|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788888 889999999999999999999999999997
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.64 E-value=5.5e-07 Score=85.91 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=149.2
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC---eEEEEecCCCCCCCCCeEEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~~~~i~vw 119 (415)
-.+.+.++.++|.|+-+|.++.-.+.+-|++......+..-+-..-.+....|++. ...+++.+. ..-.+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaiiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAIIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc------chhhhh
Confidence 35678889999999999999966677778764222111111122223444555543 355666555 566788
Q ss_pred ECCC--CCEEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCceEEE
Q 014977 120 DDHQ--SRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 120 d~~~--~~~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
++.. .+.+.-+. |...|+++.|+|+..-+. .|..++.||++... .+..+..-.....-+.+..-. ...+|
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-p~vla 175 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-PNVLA 175 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-cchhh
Confidence 8643 23333333 788999999999876665 68999999997653 344443333333445555432 22343
Q ss_pred EeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEE
Q 014977 191 CPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIY 265 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~ 265 (415)
.+..+.|.+|+.+. .++..+++|...|+.++|+.- ...+.+++.|++ |+.||..... ..+.+. ...+|+
T Consensus 176 --sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~piw 249 (1081)
T KOG0309|consen 176 --SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPIW 249 (1081)
T ss_pred --hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcce
Confidence 34667788888764 567788889999999998752 346888999999 9999986543 222332 345777
Q ss_pred EEEeCCCCC--EEEEEeCCCeEEEEEceec
Q 014977 266 SIALSPNVQ--WLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 266 ~l~~spdg~--~l~s~s~dg~i~vwd~~~~ 293 (415)
.-.+-|-|. ++.---.+..+.+++-++.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccch
Confidence 777877443 3332222335666555443
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=2.5e-05 Score=79.06 Aligned_cols=202 Identities=14% Similarity=0.119 Sum_probs=126.1
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-CCeEEEEEcCC
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVD 161 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~ 161 (415)
.+...++++.|..+...++.+... |.|.+-|..+......-.....|.+++|+||+..++ . .+++.+.+ .+
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~ 139 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KD 139 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence 445678888888766554444444 888888877765544444688999999999999888 3 34444432 11
Q ss_pred ------------------------ceeeeEEeccCC-------------------CcceEEEecCCCceEEEEeC---Cc
Q 014977 162 ------------------------LKLLHQIETLAN-------------------LRGLCCLSHHSSTSVLACPG---LQ 195 (415)
Q Consensus 162 ------------------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~g---~~ 195 (415)
|+....+.+... ...-..++|-++|.++|++. ..
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 111112221100 00123477788888887632 12
Q ss_pred c-CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcEEEEE--ecCCCcccEEEEEe
Q 014977 196 R-GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEV--RRGVDRAEIYSIAL 269 (415)
Q Consensus 196 d-g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~--~~~~~~~~v~~l~~ 269 (415)
+ ..|++|+..+..-..-....+.-.+++|-|.|.++++-. .|+. |.+|.- +|-.-..| ........|..++|
T Consensus 220 ~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr-NGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 220 GTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER-NGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec-CCccccccccCCcccccchheeee
Confidence 3 789999988543333233334446899999999998753 3556 889974 44332222 22224445899999
Q ss_pred CCCCCEEEE---EeCCCeEEEEEceecc
Q 014977 270 SPNVQWLAV---ASDKGTVHIFSLRVRV 294 (415)
Q Consensus 270 spdg~~l~s---~s~dg~i~vwd~~~~~ 294 (415)
+.++..||+ ......|++|-+.+..
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeE
Confidence 999999987 4444459999887653
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=9e-08 Score=88.21 Aligned_cols=243 Identities=9% Similarity=0.150 Sum_probs=160.6
Q ss_pred CCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEecC
Q 014977 33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAG 106 (415)
Q Consensus 33 ~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 106 (415)
..-......+|+..|..++--.+..-+++++ |.+|++|.+.+.. .....+++.|...+.++-|-.+...++++.
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc
Confidence 3334456689999999988777777778888 9999999997522 123344568888899999999998888864
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCC--eEE-EE---eCCeEEEEEcCCceeeeEEecc--CCC-
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIV-VV---LEHKIYVYSFVDLKLLHQIETL--ANL- 174 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~--~~~-~~---~d~~i~iwd~~~~~~~~~~~~~--~~~- 174 (415)
+.|.+||.--++.+..+. ..+.+..+..-++ ..+ ++ ...+|+++|.+..+....++.. ..+
T Consensus 804 -------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 804 -------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred -------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 899999988887766543 1233333333332 222 23 5789999999888777666543 122
Q ss_pred cceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE-EECCCCcEE
Q 014977 175 RGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI-FNTVDGTRL 252 (415)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v-wd~~~~~~~ 252 (415)
....+++..+.|..+++ +-.+|.|.+ +.++++.+...+...-....++ .|..+.|+....|.+ +.| |..-+|...
T Consensus 877 a~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh 953 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMH 953 (1034)
T ss_pred hheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeee
Confidence 34567777777888876 667888877 6666666665554444433343 366677888888888 888 987666655
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
.+.+.. ..+..-+ -.-|.-|+++...+.+.||.
T Consensus 954 ~q~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 954 LQDKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eccCCC--Ccchhhh--hccCceeEEeccCcEEEEEe
Confidence 454431 1111111 12355677777777788875
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=7.1e-05 Score=66.98 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-CeeE----EEEeeeCCeEEEEecCCCCC
Q 014977 47 LISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-GFRI----VEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~s~~~d~~ 110 (415)
.-.+..+||++.+++++ ...|.+||..+.....+..++.. ...+ ..+.++.+++++......|+
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 34567899999888643 23488999999877777666443 2211 12445666655554433322
Q ss_pred CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcC-CceeeeEEec----cCCCcceEEEecCC
Q 014977 111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIET----LANLRGLCCLSHHS 184 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 184 (415)
..|.|-|+..++.+.++...+...-.-..+++...+ .||.+.-..+. .|+....... ...++.....-...
T Consensus 118 ---~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 118 ---TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp ---EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred ---CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 789999999999999888766555555555554433 89999888886 5555432211 11111111111122
Q ss_pred CceEEEEeCCccCeEEEEEcCCcceEEEec---C----------ccceEEEEeCCCCCEEEEEeCC---C------cEEE
Q 014977 185 STSVLACPGLQRGQVRIEHFGLNMIKLINA---H----------DSHIACFTLTLDGLLLATASTR---G------TLIR 242 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~---~----------~~~i~~l~~sp~g~~l~s~s~d---g------~~I~ 242 (415)
.+.++.. +.+|.|+--+..+........ - .+.-.-+++++....|++.-.. + +.|.
T Consensus 195 ~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 195 GGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 2334333 367888875555543322211 0 1223457777755554443221 1 2488
Q ss_pred EEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCeEEEEEceecccC
Q 014977 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~i~vwd~~~~~~~ 296 (415)
++|+.+++.+.++.. ..++.+|..+.|.+ +|++. ..++.|.+||..+++..
T Consensus 273 v~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 999999999999884 34688999998766 66554 45789999999999864
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2e-07 Score=56.23 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=35.9
Q ss_pred cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
+++..+.+|...|++|+|+|++.+|++++.|+. |++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 467889999999999999999999999999999 99997
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=1.7e-06 Score=77.04 Aligned_cols=152 Identities=15% Similarity=0.074 Sum_probs=103.1
Q ss_pred ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce----eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.+..+..++.+++||++. +....++++....+ .....+......+..+............++. ..+.+|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV-----YSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCc-----eeeeeec
Confidence 445566788999999988 66666776654332 1122223334445555555555666666655 7888888
Q ss_pred CCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
...+.+.-.+.|-..+.+++++||.++++ .|.+|+|-....--.+..+ -+|..-+..+++.. +. .|+ +|+.|
T Consensus 139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~-~Ll-S~sGD 214 (390)
T KOG3914|consen 139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NY-LLL-SGSGD 214 (390)
T ss_pred ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cc-eee-ecCCC
Confidence 77788887888999999999999999988 6889998877655555444 45776444444443 32 344 47789
Q ss_pred CeEEEEEcCC
Q 014977 197 GQVRIEHFGL 206 (415)
Q Consensus 197 g~v~i~~~~~ 206 (415)
+++++|++..
T Consensus 215 ~tlr~Wd~~s 224 (390)
T KOG3914|consen 215 KTLRLWDITS 224 (390)
T ss_pred CcEEEEeccc
Confidence 9999999765
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=2.7e-05 Score=66.86 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=104.8
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCC-------eEEEEecCCCCC
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCN-------ILALVGAGDNSQ 110 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~l~s~~~d~~ 110 (415)
...=..++||||+.+||.+. .|.|++||+... .++.... ..-...+..+.|..- ..+++-.- .
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~-- 118 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-R-- 118 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec-c--
Confidence 33467899999999999999 999999999752 2222111 011234444555431 12333221 1
Q ss_pred CCCCeEEEEECC-----CCCEEEEEE----ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 111 YPPTKVIIWDDH-----QSRCIGEFA----FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 111 ~~~~~i~vwd~~-----~~~~~~~~~----~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
|.++-|-+. ..+....+. +...|.++.++|..++++..|.-.- +++. -. ....++.++.
T Consensus 119 ---G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~--a~~~GLtaWR 186 (282)
T PF15492_consen 119 ---GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SK--ASSCGLTAWR 186 (282)
T ss_pred ---ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----cc--ccccCceEEE
Confidence 666666542 223344444 3678999999999777661111000 0000 00 0011222222
Q ss_pred cCCCceEEE-EeCCccCeE------EEEEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 182 HHSSTSVLA-CPGLQRGQV------RIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 182 ~~~~~~~l~-~~g~~dg~v------~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
.-.+..+.. +....++.. .++..-....... ......|..|.+||||++||+...+|. |.+|++.+-+...
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQR 265 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhc
Confidence 211111111 111111111 1111111111111 224678999999999999999999999 9999999887776
Q ss_pred EEec
Q 014977 254 EVRR 257 (415)
Q Consensus 254 ~~~~ 257 (415)
.+..
T Consensus 266 ~W~~ 269 (282)
T PF15492_consen 266 SWKQ 269 (282)
T ss_pred ccch
Confidence 6654
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=1.3e-06 Score=73.36 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=74.7
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
+.++..+|....++++|+.||.+-+|+.+.. +...+.+|+.+|+.+-|+| ++..|+++++||. +.-||..+ +.+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~-~~l~ 259 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST-TFLS 259 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC-ceEE
Confidence 4444445544556667999999999887753 4556789999999999999 6678999999999 99999753 2221
Q ss_pred E---------------------EecC--CCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 254 E---------------------VRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 254 ~---------------------~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
. +..- .....|+ .|.--|..|++|++-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 0 0000 0001122 2344577899999989898875
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.7e-05 Score=76.51 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=160.0
Q ss_pred cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC---------ceEEEEeCCccCeEEEE
Q 014977 133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS---------TSVLACPGLQRGQVRIE 202 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~g~~dg~v~i~ 202 (415)
...-.++.|+|.|.+.. ....|.+.|..+.+.++.+..|...+..+.|++.+- ...+++++...|.|.+|
T Consensus 15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 34466789999998877 778899999999999999999988777777776431 33455568889999998
Q ss_pred EcCCc-ceEEEecCccceEEEEeCC---CC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CCCEE
Q 014977 203 HFGLN-MIKLINAHDSHIACFTLTL---DG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWL 276 (415)
Q Consensus 203 ~~~~~-~~~~~~~~~~~i~~l~~sp---~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l 276 (415)
+.... .+..+..|..++..++|-+ +. .+|++-..... |.+|+..+|+.+.+... ......++.+.| |.+.+
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~-lvLwntdtG~k~Wk~~y--s~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST-LVLWNTDTGEKFWKYDY--SHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE-EEEEEccCCceeecccc--CCcceeeeeeCCCCcceE
Confidence 76654 4555677888999999875 33 35666666677 99999999999887765 334566789998 77888
Q ss_pred EEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCC---CCCCCCCCcc---cccccc------cCc
Q 014977 277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP---STGANPGSSL---SFMRGV------LPK 344 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~------~~~ 344 (415)
..-+..|.+.+-+.-.-++.. -+...+-|+++++++-.. ...++..+.- .+++.+ .|.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~----------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPD----------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred EEEccCceEEEEeccCCCCCC----------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 888888888777765433221 122234455554432222 1111111110 011111 111
Q ss_pred --------------cccc--ccceEEEEeCCCceEEEEecCC---CEEEEEEeCCcEEEEEEec
Q 014977 345 --------------YFSS--EWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 345 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~dg~~~~~~~~~ 389 (415)
.|+- +.....+.++.+....+.|-|+ +.+++.=.||.+-+|.--+
T Consensus 242 ~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 1111 2233445566666666777776 7799999999999996554
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=9.5e-05 Score=64.81 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=107.0
Q ss_pred CCeEEEEECCCCCEEEEEEccC---ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 113 PTKVIIWDDHQSRCIGEFAFRS---DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~~~---~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
++.|..||..+|+.+....... ......+..++.+++ .++.|+.||..+|+.+..+..... ..... ... ++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~-~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVD-GGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEE-TTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eec-ccc
Confidence 3899999999999999998532 222223434455554 789999999999999988876332 22211 222 223
Q ss_pred EEEEeCCccCeEEEEE-cCCcceEEE-ecCc---cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc
Q 014977 188 VLACPGLQRGQVRIEH-FGLNMIKLI-NAHD---SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~-~~~~~~~~~-~~~~---~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
+++. ..++.++.++ .+++.+... .... ..........++..++.+..++. |..+|.++|+.+..........
T Consensus 79 v~v~--~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVG--TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEE--ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred cccc--cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence 3333 2566777766 667776663 3221 11112222224778888888999 9999999999988887632111
Q ss_pred --c------E-EEEEeCCCCCEEEEEeCCCe-EEEEEceecc
Q 014977 263 --E------I-YSIALSPNVQWLAVASDKGT-VHIFSLRVRV 294 (415)
Q Consensus 263 --~------v-~~l~~spdg~~l~s~s~dg~-i~vwd~~~~~ 294 (415)
. + ..+.+. ++ .++.++.++. +.+ |+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCC
Confidence 1 1 233333 44 6777777775 555 888887
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.51 E-value=1e-06 Score=84.09 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=152.1
Q ss_pred ceEEEEEeCCC--CEEEEE-eCCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEE
Q 014977 46 ELISVSWNQDY--GCFAAG-TSCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 46 ~V~~l~~sp~g--~~la~g-~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd 120 (415)
.|-.+.|+|.- .+-++. +...-.+|++.. ........+++|...++.+.|.++. ..+++++.| ..+..||
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd 143 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD 143 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence 36667777643 344444 466677898853 3344555677999999999999865 577788877 9999999
Q ss_pred CCCCC-EEEEEE-ccCceeEEEEcC-CeEEEE--eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 121 DHQSR-CIGEFA-FRSDVRSVKLSR-DRIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 121 ~~~~~-~~~~~~-~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
++.-. .+.... -......++|+. +...++ ..+.|.+||++.+ ..+..++++...+..+.+.-.-.+.. .+.+
T Consensus 144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~--~s~~ 221 (1081)
T KOG0309|consen 144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI--MSSS 221 (1081)
T ss_pred ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh--cccC
Confidence 87753 444443 345566788875 445555 5778999999765 56667777655333333322222222 3567
Q ss_pred ccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEE--EeCCCcEEEE---------EECCCC-cEEEEEecCCC
Q 014977 195 QRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRI---------FNTVDG-TRLQEVRRGVD 260 (415)
Q Consensus 195 ~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~v---------wd~~~~-~~~~~~~~~~~ 260 (415)
.|++|+.|+..... -........+|..-.+-|-|.-.++ .-.+.. +.+ |+..++ +++++|.+ |
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H 298 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H 298 (1081)
T ss_pred CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence 89999999877533 2223344567777777775442222 111112 333 333333 57888988 7
Q ss_pred cccEEEEEeCCCC----------CEEEEEeCCCeEEEEEceec
Q 014977 261 RAEIYSIALSPNV----------QWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 261 ~~~v~~l~~spdg----------~~l~s~s~dg~i~vwd~~~~ 293 (415)
...|....|-..+ -.|++-+.|.++++|.+.+.
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 7777776664322 26999999999999998763
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=0.0012 Score=62.57 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=69.6
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
...+.+.+++++|+...|+.|+.||. |.+||...+..... + ..-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46788999999999999999999999 99999876643322 2 3345789999999999999999999999999887
Q ss_pred ccCCCCCCCC
Q 014977 294 VVGEDSSSSL 303 (415)
Q Consensus 294 ~~~~~~~~~~ 303 (415)
....++.+++
T Consensus 332 pi~~qLlsEd 341 (545)
T PF11768_consen 332 PIKMQLLSED 341 (545)
T ss_pred ccceeecccc
Confidence 7655555443
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=0.00021 Score=63.29 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=123.2
Q ss_pred EEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-C-c-eeEEEEcCCeEEEE--------eCCeEEEEE
Q 014977 91 VEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-S-D-VRSVKLSRDRIVVV--------LEHKIYVYS 158 (415)
Q Consensus 91 ~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~-~-i~~l~~~~~~~~~~--------~d~~i~iwd 158 (415)
..++.+| ....++.+-.- -....+||..+++....+... + . --.-.|++||+++. ..|.|-|||
T Consensus 8 H~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3455566 44555554432 146789999999988877621 1 1 12457999999988 258899999
Q ss_pred cC-CceeeeEEeccCCCcceEEEecCCCceEEEEe-CC-----ccCe------------EEEEEcCCcceEE--E--ecC
Q 014977 159 FV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GL-----QRGQ------------VRIEHFGLNMIKL--I--NAH 215 (415)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~-----~dg~------------v~i~~~~~~~~~~--~--~~~ 215 (415)
.. +.+.+.++..+.- ..-.+...+++..|+++ |+ ..|. ++++..+++.+.+ + .-|
T Consensus 84 ~~~~~~ri~E~~s~GI--GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGI--GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred CcCCcEEEeEecCCCc--ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 98 6677777766543 34444455566444442 22 1122 2223444554444 3 236
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCc------EEEEEECCCCcEEEEEecC-----CCcccEEEEEeCCCCCEEEEEeC-CC
Q 014977 216 DSHIACFTLTLDGLLLATASTRGT------LIRIFNTVDGTRLQEVRRG-----VDRAEIYSIALSPNVQWLAVASD-KG 283 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~------~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~-dg 283 (415)
...|..+++.++|..++..-..|. .|-+++ .++.+..+... ...+.+-+|++++++.++++.+- -+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 778999999999986665544442 244444 33333333321 12357899999999998866554 56
Q ss_pred eEEEEEceecccC
Q 014977 284 TVHIFSLRVRVVG 296 (415)
Q Consensus 284 ~i~vwd~~~~~~~ 296 (415)
.+.+||..+++-.
T Consensus 240 ~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 240 RVAVWDAATGRLL 252 (305)
T ss_pred EEEEEECCCCCEe
Confidence 8999999998743
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=76.57 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=109.4
Q ss_pred CCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-----CEEEEE
Q 014977 56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEF 130 (415)
Q Consensus 56 g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-----~~~~~~ 130 (415)
|-.+++|.+..+-+-+++++-.. .| .....|.+..|...+.++..|... |.|.++|++.+ .+...+
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---sf-~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---SF-QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred eeeecccccceeEEEEeeccccc---cc-ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccCCCcceEEE
Confidence 44566777888999999875432 23 356667788888877777777766 99999998764 567777
Q ss_pred EccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977 131 AFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (415)
Q Consensus 131 ~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~ 203 (415)
-|...|+++..-. +++.+. .+|+|++||++--++ +.++.+|.+.....-+..++....+++ +++|...+||.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-ccCeeEEEEEe
Confidence 7999999998766 555554 799999999976666 889999988777777888887777776 56899999998
Q ss_pred cCCc
Q 014977 204 FGLN 207 (415)
Q Consensus 204 ~~~~ 207 (415)
....
T Consensus 375 l~~g 378 (425)
T KOG2695|consen 375 LDSG 378 (425)
T ss_pred cccC
Confidence 8743
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=2.4e-06 Score=74.68 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=82.6
Q ss_pred EEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-----cEEE
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-----TRLQ 253 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-----~~~~ 253 (415)
+++.+-.+.. +++| .+-.|.+-+......+.+. ..+.|.++.|...+.++..|..+|. |..+|++.+ .+..
T Consensus 218 awSlni~gyh-fs~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-eccc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcceE
Confidence 4444433434 3334 4555666555555545554 5778889999998999999999999 999999864 4555
Q ss_pred EEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccC
Q 014977 254 EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+. |.+.|+++..-. ++++|++.+.+|.|++||++.-++.
T Consensus 294 rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 294 RLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred EEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 665 788899988766 7899999999999999999988764
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.0016 Score=55.49 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=71.2
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
..++++|+ .+.+.--|..++....+..+ +.......+. -.| +++-|... +.+.+.+.++|..+..+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgd--fVV~GCy~-----g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGD--FVVLGCYS-----GGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECC--EEEEEEcc-----CcEEEEEecchhheeeeeehh
Confidence 45667777 88888888888777666555 3333333333 222 24444444 999999999998888887544
Q ss_pred ceeE-EEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC
Q 014977 135 DVRS-VKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA 172 (415)
Q Consensus 135 ~i~~-l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~ 172 (415)
.|.. ....+++.++. .|++.+..|..+..++...+...
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 4443 23455555554 79999999998888877665443
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00026 Score=71.98 Aligned_cols=193 Identities=13% Similarity=0.042 Sum_probs=120.4
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC--
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD-- 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~-- 121 (415)
+.|.++.|..+...++.+. .|.|.+-|.++....... .-..+|.++.|++|...++-.... +++.+-.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGR-----QTLLFMTKDF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCC-----cEEEEEeccc
Confidence 6899999999998888888 999988888765443322 446678888999987655444332 44444321
Q ss_pred --CC-------------------CCEEEEEE----------------------ccCceeEEEEcCCeEEEE-------eC
Q 014977 122 --HQ-------------------SRCIGEFA----------------------FRSDVRSVKLSRDRIVVV-------LE 151 (415)
Q Consensus 122 --~~-------------------~~~~~~~~----------------------~~~~i~~l~~~~~~~~~~-------~d 151 (415)
-. |+....+. ....=..|.|-.||.+++ .+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 00 11001111 001123488999998887 34
Q ss_pred -CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC--CccCeEEEEEcCCcceEE----EecCccceEEEEe
Q 014977 152 -HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKL----INAHDSHIACFTL 224 (415)
Q Consensus 152 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~~~----~~~~~~~i~~l~~ 224 (415)
..|+|||-+ |.+-..-..... .-.+++|-|.|..+++.. ..++.|.++..++-.-.. +......+..++|
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~--l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEG--LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccc--cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 799999965 433322222222 234566666777777654 245567777777633222 2334455899999
Q ss_pred CCCCCEEEE---EeCCCcEEEEEECCCC
Q 014977 225 TLDGLLLAT---ASTRGTLIRIFNTVDG 249 (415)
Q Consensus 225 sp~g~~l~s---~s~dg~~I~vwd~~~~ 249 (415)
+.++..||+ ...... |++|-+.+-
T Consensus 298 ns~sdiLAv~~~~~e~~~-v~lwt~~Ny 324 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSL-VQLWTTGNY 324 (1265)
T ss_pred cCCCCceeeeecccccce-EEEEEecCe
Confidence 999999987 555556 999987654
No 313
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.30 E-value=0.00081 Score=63.78 Aligned_cols=223 Identities=17% Similarity=0.148 Sum_probs=121.5
Q ss_pred EEEEEeCCCCEEEEEeCC------------cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 48 ISVSWNQDYGCFAAGTSC------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~d~------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
..++.+|.|..+|...|. .|+||+... +.+....+.. ..++.+.|..+..+++...+ |.
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~d------G~ 102 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEELVVVQSD------GT 102 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeEEEEEcC------CE
Confidence 345667888888877644 588888764 3344444423 78899999887666655443 99
Q ss_pred EEEEECCCCCEEEEEE----------ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecC
Q 014977 116 VIIWDDHQSRCIGEFA----------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~----------~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 183 (415)
++++|+. |+. .+. ....+....+..+|..+. .++.+++..-.... ....+.... .......+.
T Consensus 103 v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p--~~~~~~~~~ 177 (410)
T PF04841_consen 103 VRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIP--GLWTKFHWW 177 (410)
T ss_pred EEEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCC--Ccccccccc
Confidence 9999975 443 222 112222334455776665 55555554422211 111111100 001101111
Q ss_pred CCceEEEEeCCccCeEEEEEcCCcceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
+....+.. -..++.+.+....+..+..+.. ..+++..|++||+|++||.-..+|. +.|....-.+.+.++.
T Consensus 178 ~~~~~i~~-l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 178 PSWTVIPL-LSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFD 255 (410)
T ss_pred cccccceE-eecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEee
Confidence 10000000 0112223332222222222222 2368999999999999999999999 9998876666776766
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
.. .......|.|.-+...++.- ...|.+..
T Consensus 256 ~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 256 TD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 53 23466788888765444333 44566655
No 314
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.30 E-value=0.00027 Score=67.18 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=119.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
...-....++++|+|++++++++|...||......... ......+.|.+++.+.+-.. . +.|.++.-
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn 96 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVLES-S-----STIKIYKN 96 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence 34445789999999999999889999999854433221 12344567777666555544 3 78888642
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
-+.+....+.....+..|-. |.+++ .++.|.+||+.+++.+..+... .+..+.|++++.+++..+ +..+
T Consensus 97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t--~~~i 167 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT--KDSI 167 (443)
T ss_dssp TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-SE
T ss_pred CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe--CCeE
Confidence 23332233443333444443 55555 6677999999999999888643 245667777788888764 4567
Q ss_pred EEEEcCCc------------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 200 RIEHFGLN------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 200 ~i~~~~~~------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
.|...+.. ....+..-...|.+..|..+ .++-.+.. . |+-+ ..|+. ..+.. -..++.=+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~-~~i~~--ld~~~yll 238 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGET-GIIAH--LDKPLYLL 238 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEE-EEEEE---SS--EEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCc-ceEEE--cCCceEEE
Confidence 77555554 45555544677888888766 33333333 5 6663 34443 23332 23356667
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
...+....|.....|+.|..+.+....
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHH
Confidence 777877888888899999998876543
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.0028 Score=61.82 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=128.5
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCC---eeEE-EEeeeCCeEEEEecCCCCCC----CCCeEEEEECCCCCEE
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---FRIV-EMLFRCNILALVGAGDNSQY----PPTKVIIWDDHQSRCI 127 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~s~~~d~~~----~~~~i~vwd~~~~~~~ 127 (415)
..++.++ ++.|.-+|.++++.+.+..+.... ..+. ..... ++.+++..... .+ .++.|..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~-~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGA-EFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEecccc-ccccCCCCcEEEEEECCCCcee
Confidence 4566666 899999999988887776553221 0011 11122 23444432210 00 1388999999999999
Q ss_pred EEEEcc-Cc--------------------e-eEEEEcC-CeEEEE--eCC------------------eEEEEEcCCcee
Q 014977 128 GEFAFR-SD--------------------V-RSVKLSR-DRIVVV--LEH------------------KIYVYSFVDLKL 164 (415)
Q Consensus 128 ~~~~~~-~~--------------------i-~~l~~~~-~~~~~~--~d~------------------~i~iwd~~~~~~ 164 (415)
..+... .. + ....+.+ .+.+++ .++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 887632 10 0 1233333 344444 333 799999999999
Q ss_pred eeEEeccCCCc---------ceEEEe-cCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977 165 LHQIETLANLR---------GLCCLS-HHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLAT 233 (415)
Q Consensus 165 ~~~~~~~~~~~---------~~~~~~-~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s 233 (415)
+..++...... .+.... .+.....+++.++.+|.+.. +..+++.+...... ...++.+| + .++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEE
Confidence 88775322111 011111 12222223444667888776 55566665544321 11233344 2 2322
Q ss_pred E------------------eCCCcEEEEEECCCCcEEEEEecCCCc------ccE--EEEEeCCCCCEEEEEeCCCeEEE
Q 014977 234 A------------------STRGTLIRIFNTVDGTRLQEVRRGVDR------AEI--YSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 234 ~------------------s~dg~~I~vwd~~~~~~~~~~~~~~~~------~~v--~~l~~spdg~~l~s~s~dg~i~v 287 (415)
+ ..+|. +.-.|+.+|+.+.+.....+. .+. ..+. ..+..|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEE
Confidence 2 23577 889999999988777643111 111 1122 24578888999999999
Q ss_pred EEceecccC
Q 014977 288 FSLRVRVVG 296 (415)
Q Consensus 288 wd~~~~~~~ 296 (415)
+|.++|+..
T Consensus 421 ld~~tG~~l 429 (488)
T cd00216 421 FDATTGKEL 429 (488)
T ss_pred EECCCCcee
Confidence 999999843
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.0023 Score=58.88 Aligned_cols=175 Identities=11% Similarity=0.128 Sum_probs=105.1
Q ss_pred CeEEEEECCCCCEEEEEE--ccCceeEEE---EcCC----eEEEE------------eC-CeEEEEEcCCc----eeeeE
Q 014977 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVK---LSRD----RIVVV------------LE-HKIYVYSFVDL----KLLHQ 167 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~---~~~~----~~~~~------------~d-~~i~iwd~~~~----~~~~~ 167 (415)
..|++.|..+.+.+..+. ....+.+++ +..+ ..+++ .. |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578999988888887776 344455444 3332 34444 12 88999999873 23332
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
+....-...+.++..- ++.++++. .+.|.++...... +.....+..++........+.+++.|..... +.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEE
T ss_pred EEEEeecCcceEhhhh-CCEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEEEE
Confidence 2222222346666665 34455443 4788897766655 5444444443344444444669999998888 887754
Q ss_pred CC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 247 VD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 247 ~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
+. ...+..+........++++.|-+++..++.+..+|.+.++.....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 43 333444443324457889999877779999999999999998643
No 317
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.22 E-value=0.0037 Score=57.56 Aligned_cols=219 Identities=14% Similarity=0.200 Sum_probs=122.5
Q ss_pred CcEEEEEccCCceeEEEeccCCCeeEEE---EeeeCC----eEEEE-ecCC----CCCCCCCeEEEEECCCC-----C--
Q 014977 65 CGFRIYNCEPFKETFRRDLKSGGFRIVE---MLFRCN----ILALV-GAGD----NSQYPPTKVIIWDDHQS-----R-- 125 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~l~-s~~~----d~~~~~~~i~vwd~~~~-----~-- 125 (415)
..|++.|..+.+.+....+. ....+.+ +.+..+ ..+++ +.+. +..-..|.|.++++.+. +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECC-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 35788888777766666663 3333333 333321 33333 3221 11112289999998884 2
Q ss_pred EEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EE
Q 014977 126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EH 203 (415)
Q Consensus 126 ~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~ 203 (415)
.+......++|++++--.+...++.++.|++|++...+.+........+..+.++....+ ++++ |.....+.+ |+
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~v-gD~~~sv~~~~~~ 157 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILV-GDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEE-EESSSSEEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEE-EEcccCEEEEEEE
Confidence 223334789999999885553333899999999977762323323333346677766644 5555 444455555 66
Q ss_pred cCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC-------Cc-EEEEEecCCCcccEEEE---EeC
Q 014977 204 FGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-------GT-RLQEVRRGVDRAEIYSI---ALS 270 (415)
Q Consensus 204 ~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-------~~-~~~~~~~~~~~~~v~~l---~~s 270 (415)
.....+..+.. ....++++.|-++++.++.+..+|. +.++.... +. .+...........|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 65554444432 3556788888866678999999999 99987752 22 22222211133467777 655
Q ss_pred CC--CC------EEEEEeCCCeEEEE
Q 014977 271 PN--VQ------WLAVASDKGTVHIF 288 (415)
Q Consensus 271 pd--g~------~l~s~s~dg~i~vw 288 (415)
|. +. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 62 22 47888899988843
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.21 E-value=0.00042 Score=67.11 Aligned_cols=166 Identities=6% Similarity=-0.031 Sum_probs=105.1
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-e------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-L------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+.+.+.|.++.+...++........+.+++++.++. . ..++...+..+...+..+... .+..+ .+++
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~--vkdG 288 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEA--VKAG 288 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHh--hhCC
Confidence 778888988888888887777778889999988877 1 123333333222222222111 01111 2244
Q ss_pred eEEEEeCCccCeEEEEEcCC-----cceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcE---------
Q 014977 187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR--------- 251 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~--------- 251 (415)
++... + ++.|.+.+... ..+...-.-......+.++|||+++++++. +.. |.|+|+.+.+.
T Consensus 289 K~~~V-~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 289 KFKTI-G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CEEEE-C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence 44433 2 45677754443 233333334455678999999998887765 566 99999987553
Q ss_pred ---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 252 ---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 252 ---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
..+..- .......+|+++|....+--.|..|..|++.+
T Consensus 365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 12345788999999888889999999999987
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.19 E-value=1.2e-05 Score=69.36 Aligned_cols=157 Identities=11% Similarity=0.208 Sum_probs=98.6
Q ss_pred ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceee-eE--EeccC-----CCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977 132 FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQ--IETLA-----NLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 132 ~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~-~~--~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
|...|.++.++.|...++ .|-.|.+|++.-.... .. ++.+. ..++...+++.... .+.+ .+..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmY-SsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMY-SSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEE-ecCCCcEEe
Confidence 788899999999887777 6778999998532211 11 12211 11233344443333 3334 457899999
Q ss_pred EEcCCc-----ceE------------EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCC----
Q 014977 202 EHFGLN-----MIK------------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGV---- 259 (415)
Q Consensus 202 ~~~~~~-----~~~------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~---- 259 (415)
.+.+.. ..+ -+.+-...|..+.|+++|+++++-+.. + |+|||++.. .+++++..+.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHH
Confidence 554421 111 111223567889999999999876643 5 999999754 4666664310
Q ss_pred ------CcccE---EEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 260 ------DRAEI---YSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 260 ------~~~~v---~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
....| ..+.||.|.+.+.+|+..+...+|-+.+
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 01122 4578999999999999988888887544
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.18 E-value=8.4e-05 Score=62.84 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=58.4
Q ss_pred ceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEcee
Q 014977 218 HIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 218 ~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~ 292 (415)
.|.+++-+|.. .++++|+.||. +-+||.+...... .+.. |+.+++.+-|+| ++..|+++++||.+..||-.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48888888855 46778888888 9999998874332 3444 888999999998 677899999999999999775
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=7.5e-05 Score=70.61 Aligned_cols=189 Identities=13% Similarity=0.071 Sum_probs=121.6
Q ss_pred CeeEEEEeeeCCeEEEEecCCCCCCCC-CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eC--CeEEEEEc
Q 014977 87 GFRIVEMLFRCNILALVGAGDNSQYPP-TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSF 159 (415)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~-~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d--~~i~iwd~ 159 (415)
...+..-.|++++..++..... ... ..+.++++.+++........+.-...+|+|||+.++ .| -.|+++|+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 3344455667766544332111 011 369999999998888887777777889999999888 33 35888888
Q ss_pred CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
..+... .+..... ....-+++|+|..++++.+..|.-.| .+..+.....+......-..-.|+|||++|+..+..
T Consensus 270 ~~~~~~-~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 270 DGKNLP-RLTNGFG--INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCcce-ecccCCc--cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 766633 3432222 12255677888899988877887666 555566666665554444477899999998877743
Q ss_pred Cc--EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 238 GT--LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 238 g~--~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
+. .|.+.|+.++...+.+.. ......-.|.++|+.+...+..+
T Consensus 347 ~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 347 GGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence 21 277777777665444442 22344567888888877655443
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=6.8e-05 Score=73.82 Aligned_cols=175 Identities=17% Similarity=0.251 Sum_probs=119.7
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD 135 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~ 135 (415)
.++-|+ ...+..+|+.+.+......+...+ +.-| ..++..+.+|... |+|.+-|..+.+.+.++. |.+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~im--R~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIM--RYNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCc--eEEE--EecCcEEEeeccc-----ceEEeecCCcCceeeeeeccccc
Confidence 444455 555666777765544433332222 3222 3455667777776 999999999999999998 9999
Q ss_pred eeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE--
Q 014977 136 VRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH-- 203 (415)
Q Consensus 136 i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~-- 203 (415)
|.++....+-...+ .|.-|+|||++..+.+..+..+..+ ..+.+.|.-.....+ .+..|...+-+
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V--~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV--TSQSGQFQFVDTA 296 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE--Eecccceeecccc
Confidence 99888766544433 4788999999998887766655543 455666654444433 34678888733
Q ss_pred -cCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 204 -FGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 204 -~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
.... .+..+......+..+.++++|+.+|.|..+|. |.+|-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 2222 23334444566999999999999999999999 99996
No 323
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.0018 Score=58.52 Aligned_cols=178 Identities=12% Similarity=0.010 Sum_probs=102.7
Q ss_pred CeEEEEECCCCCEEEEEEccCceeE-EEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCCCceEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRS-VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l 189 (415)
+.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++.....+... ...........++++.+.
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 7888888776643 33444444444 455667777778888888888666553333211 111223344455566555
Q ss_pred EEeCC----------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--C----cEEE
Q 014977 190 ACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--G----TRLQ 253 (415)
Q Consensus 190 ~~~g~----------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~----~~~~ 253 (415)
+.+-. .-|.++..+..+..++.+..+-..-+.|+||||++.|+.+......|.-|++.. + +...
T Consensus 126 fgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 126 FGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred EeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 43322 012233333334555556665666789999999988887776543388887652 2 1111
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecc
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~ 294 (415)
.+.. ...+..-.++...+|.+-+++..+| .|.+|+.+ ++
T Consensus 206 ~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 206 VDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 1211 1344556677778888765555554 78888877 55
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00032 Score=66.41 Aligned_cols=174 Identities=14% Similarity=0.057 Sum_probs=112.0
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
..+.+-|.. +...+.+. ....+..-.|+|++..++ .. ..++++++.+++....+.... ......++|+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspD 248 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPD 248 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCC
Confidence 566666644 65555555 456677788999988776 22 469999998887665554222 2344566777
Q ss_pred ceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-c-EEEEEECCCCcEEEEEecCCCc
Q 014977 186 TSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDR 261 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~ 261 (415)
++.|+++...||...| .+..++....+....+.-..-.|+|||+.|+-.+..+ . .|.++|.+.+.. ..+.. ..
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~ 325 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG 325 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence 7888888888888777 4455555555555555555778999999888766543 2 366777765554 33332 11
Q ss_pred ccEEEEEeCCCCCEEEEEeCC-Ce--EEEEEceecc
Q 014977 262 AEIYSIALSPNVQWLAVASDK-GT--VHIFSLRVRV 294 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~d-g~--i~vwd~~~~~ 294 (415)
..-..-.|+|||++|+..+.. |. |.+.++.++.
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 112267899999999877643 43 5555555444
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.10 E-value=0.0004 Score=66.03 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=116.9
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL 162 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~ 162 (415)
........+.++|++.+++.+++ |...++.....+.. ..+.-....|.+.+.+.+ ..+.|.|+.--+.
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence 34445677889999988877665 88888873332221 124455678888888777 4678999743222
Q ss_pred eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLI 241 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I 241 (415)
+....+.... .+-.+-. |.+|+..+ ++.|.++++.. +.++.+... +|..+.|+++|.+++..+.+. +
T Consensus 100 ~~~k~i~~~~---~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i 167 (443)
T PF04053_consen 100 EVVKSIKLPF---SVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--I 167 (443)
T ss_dssp -TT-----SS----EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--E
T ss_pred ccceEEcCCc---ccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--E
Confidence 3322343322 2233333 55666543 45788888774 555555533 489999999999999998775 6
Q ss_pred EEEECCCC-----------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccc
Q 014977 242 RIFNTVDG-----------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQST 310 (415)
Q Consensus 242 ~vwd~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 310 (415)
.|++.... .....+.. -...|.+..|..| -++.+ +.. .|+. +-.|+.+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~-------------- 226 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETG-------------- 226 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEE--------------
T ss_pred EEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcc--------------
Confidence 77664322 02222221 1346888889776 33333 333 6766 5555532
Q ss_pred ccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 311 ELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.++.-+.+.+++.+.++ +++++.-.|+.+..|.++.
T Consensus 227 -------------------------------------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 -------------------------------------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -------------------------------------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -------------------------------------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 23322356778888886 9999999999999999986
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00014 Score=71.05 Aligned_cols=221 Identities=9% Similarity=0.094 Sum_probs=129.8
Q ss_pred EEEEEeCCCCEEEEEe-----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 48 ISVSWNQDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
+-.+|+|...+||+++ .|.|.||- ++++... .. ..+..+.+++|+|....|+.+-.- |.+.+|...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr--~V-t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~ 89 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR--DV-TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN 89 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc--cc-ccceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence 4457999999999876 57788884 3333211 11 345566779999999999888776 999999966
Q ss_pred CCCEEEEE-EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec--c--CCCcceEEEecCCCce------E
Q 014977 123 QSRCIGEF-AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--L--ANLRGLCCLSHHSSTS------V 188 (415)
Q Consensus 123 ~~~~~~~~-~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~ 188 (415)
+.+.-... .|+.+|..+.|+++|..+. .-|.+.+|.......++.... | ......+++...+++. .
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 55443333 2899999999999999888 457899998753222222111 1 1122344444444321 1
Q ss_pred EEEeCCccCeEE-EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 189 LACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 189 l~~~g~~dg~v~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
.+++|. +.-+- .+++..+....-..|. =.|+|..+..++.+|+ |+-.|- .|+.....+. .+. ..+
T Consensus 170 aaVtgD-e~alD~~fnwk~~~a~rs~~ks-------gv~~g~~F~~~~~~Gt-Vyyvdq-~g~~~~V~k~---dS~-vQm 235 (1416)
T KOG3617|consen 170 AAVTGD-ESALDEPFNWKESLAERSDEKS-------GVPKGTEFLFAGKSGT-VYYVDQ-NGRQRTVHKL---DSE-VQM 235 (1416)
T ss_pred hhccCc-hhhhcccccCccchhhcccccc-------CCCCCcEEEEEcCCce-EEEEcC-CCcEEEEEEc---cch-HHH
Confidence 233343 22222 2222111100000111 1478888999999999 777773 5666555543 122 234
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEce
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
-|.+-..-|+....+-++.++=+.
T Consensus 236 Lf~~~~eai~~i~e~lr~~l~~v~ 259 (1416)
T KOG3617|consen 236 LFMGYCEAISIIIEFLRDCLIFVL 259 (1416)
T ss_pred HHhcccceEEEEeeeceeeEEEec
Confidence 566655555555556555555443
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00084 Score=66.06 Aligned_cols=189 Identities=14% Similarity=0.191 Sum_probs=111.4
Q ss_pred eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc-eeEEEEcCCeEEEE----eCC----eEEEEEcCCc-
Q 014977 94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD-VRSVKLSRDRIVVV----LEH----KIYVYSFVDL- 162 (415)
Q Consensus 94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~-i~~l~~~~~~~~~~----~d~----~i~iwd~~~~- 162 (415)
++++++..++-|..+ |.|.+.+ ..-+.++.++ +... |..+....+..+++ .++ .++||+++.-
T Consensus 30 c~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 356666666666665 8877776 3344446665 4444 55555555545555 222 6999999532
Q ss_pred -----eee--eEEeccC---CCcceEEEecCCCceEEEEeCCccCeEEEEE---cCC--cceEEEecCccceEEEEeCCC
Q 014977 163 -----KLL--HQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEH---FGL--NMIKLINAHDSHIACFTLTLD 227 (415)
Q Consensus 163 -----~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~---~~~--~~~~~~~~~~~~i~~l~~sp~ 227 (415)
.++ +.+.++. ++.....++.+.+-..+|+ |-.+|.|..+. .+. ...........+|+.+++..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 1222222 1222333344434456665 88999998732 222 222223344679999999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 228 GLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 228 g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
++.++-+..... |.+|.+....+ ...+.. +..++.|.+|++....+++++... +.+|+.+..
T Consensus 183 ~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGR 245 (933)
T ss_pred CceeEEEEecce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecCce-EEEEcCCCc
Confidence 987333333345 99999873332 333554 667899999987666466665554 999998743
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.4e-05 Score=68.73 Aligned_cols=197 Identities=12% Similarity=0.132 Sum_probs=136.4
Q ss_pred eeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee
Q 014977 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH 166 (415)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~ 166 (415)
+..-..++.+++.| |.++.|.-..-. .+..+. |...|.+++.+-++.+.+ .|..++++|+++...+.
T Consensus 16 ~~tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin 90 (558)
T KOG0882|consen 16 FPTKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN 90 (558)
T ss_pred eeehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence 33445566777777 999999843312 222222 678899999999998888 28899999998766655
Q ss_pred EEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977 167 QIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLI 241 (415)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I 241 (415)
.++...-|.. .++...+. -..++++...++.+.+.+..+. ....-.-|..+|..+.+++-+..+++....|. |
T Consensus 91 miKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-V 168 (558)
T KOG0882|consen 91 MIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-V 168 (558)
T ss_pred hcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-e
Confidence 4443333222 33333322 2356665667888888665542 23344568999999999999999999998998 9
Q ss_pred EEEECCC------CcEEEEEec-------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977 242 RIFNTVD------GTRLQEVRR-------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED 298 (415)
Q Consensus 242 ~vwd~~~------~~~~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~ 298 (415)
.-|.... .+....++. ....+...++.|+|+|..+.+-+.|..|+++++++++....
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 9998752 111111110 11345678999999999999999999999999999986543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0023 Score=63.13 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=120.3
Q ss_pred EEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCC----
Q 014977 51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQS---- 124 (415)
Q Consensus 51 ~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~---- 124 (415)
.|++.+..++.|+ +|.|.+++-. -+ ....++.+...++...+.-+. .+|++-+.|..-....|++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQ-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ce-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 3678899999999 9998777643 11 212343444445555565554 5666655552222237999997542
Q ss_pred --CEEEE---EE-----ccCceeEEEEcCCeEEEE---eCCeEEEEEc---CC-ceeeeEEeccCCCcceEEEecCCCce
Q 014977 125 --RCIGE---FA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSF---VD-LKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 125 --~~~~~---~~-----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+++.+ +. ...++..++++.+-..++ .+|.|..+.= ++ +...........+++...+..++...
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 33422 22 245788899998877766 7899988852 11 11111122234455555565555543
Q ss_pred EEEEeCCccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 188 VLACPGLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+++ ....|.++...++. ...+..|.....|..+++....+++++.. . +.+||....++-..+.
T Consensus 187 lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~-l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F-LYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e-EEEEcCCCcceeeeec
Confidence 3443 24568887777765 55577888899999998765545555544 3 9999986555544555
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0093 Score=56.66 Aligned_cols=168 Identities=13% Similarity=0.181 Sum_probs=90.3
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce-----EEEecCCCc
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL-----CCLSHHSST 186 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 186 (415)
.|.+|+ ..|+.+..+. ..+.|.++.|+.+..+++ .||.+++||+.... ...+........+ ........|
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 589998 6788888877 348999999999887777 89999999986333 1111111100011 111222244
Q ss_pred eEEEEeCCccCeEEE-EEcCCc-ceEEEe---c-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 187 SVLACPGLQRGQVRI-EHFGLN-MIKLIN---A-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i-~~~~~~-~~~~~~---~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
+++.+ .++.+.+ .+.... ..+.+. . +........++.+....+....++. +.+.+-...+.
T Consensus 140 -ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 -IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred -EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 33333 2444554 332221 111111 0 0000000223334444344444444 44333222111
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+. ..+++..|+.||+|++||.-..+|.+.|...+-.+
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 11 23579999999999999999999998887654443
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.01 Score=57.98 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=103.0
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCe----eEE--EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF----RIV--EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF 130 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~ 130 (415)
.+.+++ ++.+.-.|..+++.+.......... .+. .+....++.+++.. .+ +.|.-+|.++|+.+..+
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~-----g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FD-----GRLVALDAETGKQVWKF 136 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CC-----CeEEEEECCCCCEeeee
Confidence 444455 8888888988877776654422100 000 01111214444433 33 99999999999999888
Q ss_pred EccCc------ee-EEEEcCCeEEEE-e----------CCeEEEEEcCCceeeeEEeccCCCc-ce--------------
Q 014977 131 AFRSD------VR-SVKLSRDRIVVV-L----------EHKIYVYSFVDLKLLHQIETLANLR-GL-------------- 177 (415)
Q Consensus 131 ~~~~~------i~-~l~~~~~~~~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~-~~-------------- 177 (415)
..... +. ...+.. +.+++ . ++.++.+|..+++.+..+....... ..
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred cCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 74332 11 122222 44443 1 4789999999999888775432100 00
Q ss_pred ----EEEecCCCceEEEEeCCccC------------------eEEE-EEcCCcceEEEecCccce------EEEEeC---
Q 014977 178 ----CCLSHHSSTSVLACPGLQRG------------------QVRI-EHFGLNMIKLINAHDSHI------ACFTLT--- 225 (415)
Q Consensus 178 ----~~~~~~~~~~~l~~~g~~dg------------------~v~i-~~~~~~~~~~~~~~~~~i------~~l~~s--- 225 (415)
.....++.+..+++ +..++ .|.- +..+++..-..+.-.... ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 216 GTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 01122222223333 33333 3433 445555555543211100 000111
Q ss_pred -CCCC---EEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 226 -LDGL---LLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 226 -p~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
-+|. .++.++.+|. +...|.++|+.+.....
T Consensus 295 ~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPE 329 (488)
T ss_pred ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEe
Confidence 1343 6778888999 99999999999877653
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00034 Score=62.79 Aligned_cols=242 Identities=12% Similarity=0.045 Sum_probs=129.4
Q ss_pred CccCCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCC
Q 014977 37 TAFSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPP 113 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~ 113 (415)
.+...+|...|..++|+|... ++..++ ++.|+|.|+++........ ....+.+++|+-+ ..++.+|...
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~n----- 257 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQN----- 257 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccC-----
Confidence 346788999999999999887 677788 9999999999865544433 2366777777764 4555566555
Q ss_pred CeEEEEECCCCC-EEEEEE---ccCceeEEEEcC-------CeEEEEeCCeEEEEEcCC--ceeeeEEeccCCCcceEEE
Q 014977 114 TKVIIWDDHQSR-CIGEFA---FRSDVRSVKLSR-------DRIVVVLEHKIYVYSFVD--LKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 114 ~~i~vwd~~~~~-~~~~~~---~~~~i~~l~~~~-------~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~ 180 (415)
|.|.|||++..+ .+.++. ...+|..++.-+ .|.+++.--.+..|++.- +.....++.. .+..++.+
T Consensus 258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele-~pG~cism 336 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE-PPGICISM 336 (463)
T ss_pred ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC-CCcceeee
Confidence 999999987643 222222 223444433322 222222333334454421 1111111111 11233444
Q ss_pred ecCCCceEEEEeCCccC------e--EEEEEcCCcceEEEe-cC-ccc------eEEEEeCCCCCEEEE-EeCCCcEEEE
Q 014977 181 SHHSSTSVLACPGLQRG------Q--VRIEHFGLNMIKLIN-AH-DSH------IACFTLTLDGLLLAT-ASTRGTLIRI 243 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg------~--v~i~~~~~~~~~~~~-~~-~~~------i~~l~~sp~g~~l~s-~s~dg~~I~v 243 (415)
..++....++.+-..+. . ++++..++..+-..+ ++ .+. -..+.-.++.++|+. +...+. +.+
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil 415 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LIL 415 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEE
Confidence 44443233332221110 0 122222332221111 11 000 011222345555554 444556 999
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCC-C-CCEEEEEeCCCeEEEEEcee
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSP-N-VQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~sp-d-g~~l~s~s~dg~i~vwd~~~ 292 (415)
||..+++.++++.- ..+|.+++... + +.+|++-++| .++||..+.
T Consensus 416 ~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~es 462 (463)
T KOG1645|consen 416 QDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNES 462 (463)
T ss_pred eccchhheeeeccc---CcceeecceeecCCcchhhheecc-eEEEEecCC
Confidence 99999999999884 46788876543 2 3477766654 589987653
No 333
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.6e-05 Score=71.11 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=100.8
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE-EEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY-SIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
...+..+.|+|.-.++|.+..+|. |.++.+. .+.+.++.. +...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 345678899999999999999999 9999886 888888885 333455 99999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccc---ccccccCccccccc-------ceEEEEeCCCceEE
Q 014977 295 VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS---FMRGVLPKYFSSEW-------SFAQFHIPEVTHFI 364 (415)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 364 (415)
.... ...+.+...-+.-++..-............+ .+++.+|+.-.+.+ .+..++.|. .
T Consensus 96 ~l~~-------~~~s~e~~is~~~w~~~~v~~e~n~~d~~~na~del~rll~~L~t~~rn~~~~sk~~sq~~~pk----~ 164 (665)
T KOG4640|consen 96 RLVS-------FLFSVETDISKGIWDRIEVRVEENNRDFACNAIDELPRLLPKLPTSKRNIVPCSKIFSQFRGPK----I 164 (665)
T ss_pred ceec-------cccccccchheeecccceeeccccccchhhhhHhHHHHHhccCCCCcccCCcccchhhhhhCCc----c
Confidence 6541 1234444445555553333333333332222 33444554433332 222233222 1
Q ss_pred EEecCC---CEEEEEEeCCcEEEEEEec
Q 014977 365 AAFGSQ---NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 365 ~~~~~~---~~i~~~~~dg~~~~~~~~~ 389 (415)
.....+ ..+.+.+.-|..+|+.+..
T Consensus 165 ~~l~~n~kl~Vlm~~ge~g~~~I~~~~~ 192 (665)
T KOG4640|consen 165 DDLDSNLKLDVLMVFGERGNDKITAFFN 192 (665)
T ss_pred ccccccceeEEEEeeccccceEeeeccc
Confidence 222222 3344455558888877765
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.017 Score=54.49 Aligned_cols=238 Identities=15% Similarity=0.110 Sum_probs=153.0
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECC
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....+.+.+++..+.+.. ...+.+.+.. .................+..++.+. .++....+ +.|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCC-----CeEEEEcCc
Confidence 566778888886666555 2333333332 1111111111112333444555443 55555444 899999988
Q ss_pred CCCEEEEEEccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+.+.............+++++++..+. . ++.+.+.|-.+.+.+........+ ..+.+++++..+..+...+
T Consensus 105 ~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 105 TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEecCC
Confidence 888888877666888899999886555 2 588999998888888775544333 5566666776665555678
Q ss_pred CeEEEEEcCCcceEE-----EecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEE-EecCCCcccEEEE
Q 014977 197 GQVRIEHFGLNMIKL-----INAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQE-VRRGVDRAEIYSI 267 (415)
Q Consensus 197 g~v~i~~~~~~~~~~-----~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l 267 (415)
+.|.+.+.....+.. ...-......+.++|+|.++...... +. +...|..++..... +... .. ....+
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~v 258 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRGV 258 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCce
Confidence 888886655554442 11122334678899999976665544 47 99999988877655 2221 22 45678
Q ss_pred EeCCCCCEEEEEeCC-CeEEEEEceecccC
Q 014977 268 ALSPNVQWLAVASDK-GTVHIFSLRVRVVG 296 (415)
Q Consensus 268 ~~spdg~~l~s~s~d-g~i~vwd~~~~~~~ 296 (415)
..+|+|..+.+.... +.+.+-|..+....
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 899999998887444 78999888876543
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0043 Score=59.98 Aligned_cols=117 Identities=7% Similarity=0.012 Sum_probs=84.5
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
+..-|...|.--++...+++++.|+ -|.+.+|+-..+... .....+....++....+++..++|.++.. |.|.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~-----g~V~ 101 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTAS-----GRVS 101 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCC-----ceEE
Confidence 4455677788888888999999999 899999998764433 22332344555566677777777777776 8999
Q ss_pred EEECCCCCEEEE--E-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977 118 IWDDHQSRCIGE--F-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD 161 (415)
Q Consensus 118 vwd~~~~~~~~~--~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~ 161 (415)
++.+..+.+-.. + .|+..|++++|++++..+. ..|+|..-.+..
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 998766432111 1 1678999999999999888 467887777665
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=1.1e-05 Score=78.85 Aligned_cols=216 Identities=9% Similarity=0.059 Sum_probs=135.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
....|....+|++|+-+.++|++|+ .|.|++|++.++...-. ...|...+..+..+.++....+.+.. +.-...
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccc---cCchHH
Confidence 4567888999999999999999999 99999999998665443 33677777777777766544443321 124677
Q ss_pred EEECCC-CCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--CCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 191 (415)
+|++.. +.....+. .-.++.|+.....-+ ......+||++++..+.++-... ....-...+++|...++.
T Consensus 1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 898654 34444443 234566765432222 45678899999988777642211 111112334444444543
Q ss_pred eCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
.||. +|+.+. +.++.+......+ .-.|+|+|..++.-+ .|||+++.+.++.+..- .-..+.|+
T Consensus 1247 ---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~VtFN 1310 (1516)
T KOG1832|consen 1247 ---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVTFN 1310 (1516)
T ss_pred ---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEEec
Confidence 3442 477665 3344443333222 235899998877633 48999999888776642 23567888
Q ss_pred CCCCEEEEE
Q 014977 271 PNVQWLAVA 279 (415)
Q Consensus 271 pdg~~l~s~ 279 (415)
..|..++..
T Consensus 1311 stG~VmYa~ 1319 (1516)
T KOG1832|consen 1311 STGDVMYAM 1319 (1516)
T ss_pred cCccchhhh
Confidence 888876543
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.86 E-value=0.0006 Score=67.42 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=115.6
Q ss_pred CeEEEEECCCCCEEEEEEc-cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAF-RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
..+..+|+.+.+..+.... ...|.-|+.+....... ..|+|.+-|..+.+.++++..|.. .+..+... |.+|++
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--siSDfDv~--GNlLit 232 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--SISDFDVQ--GNLLIT 232 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--ceeeeecc--CCeEEE
Confidence 6788889888887777763 33566666554433333 789999999999999999999987 55555554 446666
Q ss_pred eCC--------ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCC-cE-EEEEecCC
Q 014977 192 PGL--------QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG-TR-LQEVRRGV 259 (415)
Q Consensus 192 ~g~--------~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~-~~-~~~~~~~~ 259 (415)
+|. .|..|++|+.+. +.+..+.-+.++ .-+.|+|.- ..+++++..|. ..+-|..+. .+ ...+....
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v~p 310 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMVNP 310 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccccCCCccceeEEcc
Confidence 563 345567766553 333333333333 446677743 46788888898 999884321 11 22222221
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
....+..+.++++|+.||.+..+|.|.+|.
T Consensus 311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 311 NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 444699999999999999999999999998
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.014 Score=52.38 Aligned_cols=199 Identities=12% Similarity=0.074 Sum_probs=119.4
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEE-------------eccCCCeeEEEEe---eeCCeEEEEecCC
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR-------------DLKSGGFRIVEML---FRCNILALVGAGD 107 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~l~s~~~ 107 (415)
...|..+...++-+.|++-+|+.+.+++++........ .+ .....+..++ .......++.+-.
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEEEC
Confidence 33499999999988888888999999999754433311 11 1222233333 2223344444443
Q ss_pred CCCCCCCeEEEEECCCC-----CEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCC--------
Q 014977 108 NSQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANL-------- 174 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------- 174 (415)
..|.+|.+... +..+++.....+.+++|.++...++..+...+.|+.++.....+......
T Consensus 114 ------k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~ 187 (275)
T PF00780_consen 114 ------KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNS 187 (275)
T ss_pred ------CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhccc
Confidence 68888876542 56677778899999999977777767888999999876654443222111
Q ss_pred -cceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE--EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 175 -RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 175 -~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
.....+..-+++.+|++- .+-.+. -+..+...+ .+.- .....++++. ..+|+.... +. |.||++.+++.
T Consensus 188 ~~~~~~~~~~~~~e~Ll~~--~~~g~f-v~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 188 SSKPLGIFQLSDNEFLLCY--DNIGVF-VNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGEL 259 (275)
T ss_pred CCCceEEEEeCCceEEEEe--cceEEE-EcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcE
Confidence 112222222334555541 222222 344444433 2332 2344555553 346666554 56 99999999999
Q ss_pred EEEEec
Q 014977 252 LQEVRR 257 (415)
Q Consensus 252 ~~~~~~ 257 (415)
++.+..
T Consensus 260 vQ~i~~ 265 (275)
T PF00780_consen 260 VQTIPL 265 (275)
T ss_pred EEEEEC
Confidence 988875
No 339
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.85 E-value=0.025 Score=54.16 Aligned_cols=243 Identities=13% Similarity=0.095 Sum_probs=126.4
Q ss_pred CceEEEEEeCCCCEEEEEe--CCc----EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC------
Q 014977 45 IELISVSWNQDYGCFAAGT--SCG----FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP------ 112 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~------ 112 (415)
..+....++|||+++|.+- .|. ++++|+++++.+ ...+.. .....+.|.+++..++....+....
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 3445788999999999765 444 899999986443 222211 1112278888754443333222112
Q ss_pred CCeEEEEECCCCCE--EEEEE--ccCc-eeEEEEcCCeEEEE------eC-CeEEEEEcCCc----eeeeEEeccCCCcc
Q 014977 113 PTKVIIWDDHQSRC--IGEFA--FRSD-VRSVKLSRDRIVVV------LE-HKIYVYSFVDL----KLLHQIETLANLRG 176 (415)
Q Consensus 113 ~~~i~vwd~~~~~~--~~~~~--~~~~-i~~l~~~~~~~~~~------~d-~~i~iwd~~~~----~~~~~~~~~~~~~~ 176 (415)
...|..|.+.+... ...+. .... ...+..++|+++++ .+ ..+++.++..+ .....+........
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 46789999877643 23343 2333 67888999998877 24 67888998764 22333332222111
Q ss_pred eEEEecCCCceEEEEeCC--ccCeEEEEEcCCcc----eEEEecCcc--ceEEEEeCCCCCEEE-EEeCCCc-EEEEEEC
Q 014977 177 LCCLSHHSSTSVLACPGL--QRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLA-TASTRGT-LIRIFNT 246 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~--~dg~v~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~-s~s~dg~-~I~vwd~ 246 (415)
..+... .+.+++.+.. .++.|..-+..... ...+..+.. .+..+.. .+.+|+ ....++. .|+++++
T Consensus 281 -~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 281 -YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp -EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred -EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 112222 2333333321 22333333333211 224555555 3444444 344444 4444442 3889998
Q ss_pred CCCcEEEEEecCCCcccEEEEEeCCCCCEEE--EEeC--CCeEEEEEceeccc
Q 014977 247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLA--VASD--KGTVHIFSLRVRVV 295 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~--s~s~--dg~i~vwd~~~~~~ 295 (415)
..+.....+... ..+.|..+...+++..+. ..+. -++++.||+.+++.
T Consensus 357 ~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 745555566543 334567777667666443 2332 35788889888874
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.00093 Score=67.16 Aligned_cols=132 Identities=18% Similarity=0.329 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-------CceEEEEeCCccCeEEEEEcCCcc--eEEEe----cCcc
Q 014977 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------STSVLACPGLQRGQVRIEHFGLNM--IKLIN----AHDS 217 (415)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~dg~v~i~~~~~~~--~~~~~----~~~~ 217 (415)
...|+-.|++.|+.+..+..+... .+..+.++. ...++ |-.+..+..|+.+... +..-. ....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCC
Confidence 578999999999999999887652 366776642 22233 3345556556655432 22111 2345
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
...|++-+.+| +||+|+.+|. ||+||- .|+.-++ |.+ ...+|.+|..+.||+||++.+ +..|.|++..-
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~ 648 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLLLIDTLI 648 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEEEEEEee
Confidence 67788888888 6899999999 999994 5543333 333 567999999999999987665 56688888754
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.83 E-value=0.0037 Score=60.83 Aligned_cols=186 Identities=9% Similarity=-0.041 Sum_probs=108.7
Q ss_pred EEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977 51 SWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (415)
Q Consensus 51 ~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~ 128 (415)
=++|||+.+...+ .+.+.+.|.++.+....... +. ....+.+++++.++...+.+.. ...++...+..+...+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dg--npd~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DG--NLDNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAERDWVV 274 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CC--CcccceECCCCCEEEEeccCcc-cCcceeeeccccCceEE
Confidence 3456887665444 67788888887665554443 22 2234456667666555432100 01333333332222222
Q ss_pred EEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-----ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977 129 EFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202 (415)
Q Consensus 129 ~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~ 202 (415)
.+.-.. + -++.++|++.. .++.|.+.|..+ .+.+..+..... ...+..+|+++++++++..+.+|.+.
T Consensus 275 vfni~~-i--ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKs---PHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 275 VFNIAR-I--EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKN---PHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EEchHH-H--HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCC---ccceEECCCCCEEEEeCCCCCcEEEE
Confidence 221110 0 02334565544 667899999887 455665655443 34455667788888889889999996
Q ss_pred EcCCcc-------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 203 HFGLNM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 203 ~~~~~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
+..... +.......+ ....+|.++|....+-.-|.. |..||+..
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 654422 222222222 345788999988888888998 99999875
No 342
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=0.008 Score=52.08 Aligned_cols=225 Identities=15% Similarity=0.161 Sum_probs=128.0
Q ss_pred EEEEEeCCCC-EEEEEe-CCc-EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977 48 ISVSWNQDYG-CFAAGT-SCG-FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (415)
Q Consensus 48 ~~l~~sp~g~-~la~g~-d~~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~ 124 (415)
..++|+|... -++.+. -|+ ..++|....++.....-.......-.-.|++++.+|.....|..-..|.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3456666433 344444 333 4677777655544433222222222345899999998887775556789999997754
Q ss_pred -CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEE-E-------c------------CCceeeeEEecc--CCCcceEE
Q 014977 125 -RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVY-S-------F------------VDLKLLHQIETL--ANLRGLCC 179 (415)
Q Consensus 125 -~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iw-d-------~------------~~~~~~~~~~~~--~~~~~~~~ 179 (415)
+.+.++. |.-....+.+.+||+.++ .+|.|..- | + .+++.+...... .....+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 4455565 666778899999999988 67766655 2 2 222222211111 11122333
Q ss_pred EecCCCceEEEEeCCccCeEEE-EEcC---------------CcceEEEe-------cCccceEEEEeCCCCCEEEEEeC
Q 014977 180 LSHHSSTSVLACPGLQRGQVRI-EHFG---------------LNMIKLIN-------AHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i-~~~~---------------~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
+...+ ||+|.. -.+. ++.+..+. .....|-+|+.+.+..+++..+-
T Consensus 231 ld~g~-----------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 231 LDIGR-----------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred eeeCC-----------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence 33333 444443 1111 22222222 12345778888877777777777
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
.|....+||..+|..+..-.-. ....++- ...-+++.+.+|.+.++.
T Consensus 300 ~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEecc
Confidence 7765889999999987543321 1233333 333466677788888873
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=1.6e-05 Score=77.89 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=130.6
Q ss_pred eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eCCeEE
Q 014977 82 DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIY 155 (415)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d~~i~ 155 (415)
.|+.+.....+++|+.+...++.|... |.|+++++.+|.....+. |...|+-+.-+.+|.... ..--..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 346777888999999988888888877 999999999999888888 999999999999988776 122467
Q ss_pred EEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEE-Ee---cCccceEEEEeCCCCC
Q 014977 156 VYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKL-IN---AHDSHIACFTLTLDGL 229 (415)
Q Consensus 156 iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~-~~---~~~~~i~~l~~sp~g~ 229 (415)
+|++. ++...+.+... ..+.|+-+.....+ |.......+|+... .++.+ +. +....-+...|+|+..
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 89984 34555555432 34555544333333 33344566665543 33333 22 2223336788999998
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+++ .||. +||++..+.++.|.. .... ..=.|+|.|.-++.-+ .|||+++-+-.
T Consensus 1244 LIl---ndGv---LWDvR~~~aIh~FD~--ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1244 LIL---NDGV---LWDVRIPEAIHRFDQ--FTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred eEe---eCce---eeeeccHHHHhhhhh--heec-ccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 876 5776 999998888877765 2211 2235999999888765 58999987654
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.021 Score=51.69 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=122.9
Q ss_pred EEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 49 SVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 49 ~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
+..|.++...|.-.. .+.|.-|+.++.+.... .. .............+.++++. ..+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~--p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PS--PGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-EC--CCCcccceeecCCCeEEEEc--------cccEEEeccCCce
Confidence 345778877666655 78888888775433222 11 11112223344455555542 5567777766665
Q ss_pred EEEEE------ccCceeEEEEcCCeEEEEeC--------------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 127 IGEFA------FRSDVRSVKLSRDRIVVVLE--------------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 127 ~~~~~------~~~~i~~l~~~~~~~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+..+. .....+++.+.|+|.+.+.+ |.++.+|. .+..+..+..+.. ....++++|++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpDg 174 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPDG 174 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCCC
Confidence 43332 13456788899998888722 22444443 4444444443222 22345555566
Q ss_pred eEEEEeCCccCeEEEEEcC---C----cc-eEEEecCccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEec
Q 014977 187 SVLACPGLQRGQVRIEHFG---L----NM-IKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~---~----~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~ 257 (415)
+.+.++-+..+.|.-+... + +. ...+....+..-.++...+|.+.+++-.+| . |.+|+.. |+++..+..
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence 5666655555666664433 1 11 122223345666778888898776555555 6 9999976 999988886
Q ss_pred CCCcccEEEEEeC-CCCCEEEEEe
Q 014977 258 GVDRAEIYSIALS-PNVQWLAVAS 280 (415)
Q Consensus 258 ~~~~~~v~~l~~s-pdg~~l~s~s 280 (415)
....+++++|- |+.+.|...+
T Consensus 253 --P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 253 --PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred --CCCCCccceEeCCCcCEEEEEe
Confidence 33567888885 4455554433
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0015 Score=63.84 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=111.8
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLR 175 (415)
Q Consensus 99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 175 (415)
..+++-|... |.|++.+. .+.....+.|... ..+|.+++ .||+|.|..+-+.+...++.-+ .++
T Consensus 49 ~~~~~~GtH~-----g~v~~~~~-~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpi 115 (846)
T KOG2066|consen 49 DKFFALGTHR-----GAVYLTTC-QGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPI 115 (846)
T ss_pred cceeeecccc-----ceEEEEec-CCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-Ccc
Confidence 3455555555 88988884 3333333334333 56788887 6999999998877776666543 345
Q ss_pred ceEEEecC--C-CceEEEEeCCccCeEEE----EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 176 GLCCLSHH--S-STSVLACPGLQRGQVRI----EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 176 ~~~~~~~~--~-~~~~l~~~g~~dg~v~i----~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
..++++|+ . ..+.++ +|+..| +.+ |..+...+ .+....++|.++.| .|.++|-++.+| |+|||+.+
T Consensus 116 ksial~Pd~~~~~sk~fv-~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~ 188 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFV-SGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPT 188 (846)
T ss_pred eeEEeccchhhhhhhhee-ecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccc
Confidence 56666665 1 123344 477777 555 33232333 46677899999999 578999999887 89999999
Q ss_pred CcEEEEEecCCCc----ccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 249 GTRLQEVRRGVDR----AEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 249 ~~~~~~~~~~~~~----~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
++.+..++..... .-...+.|.++.+ |+.|- ..+|+|..++.+
T Consensus 189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIKKR 235 (846)
T ss_pred cceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEecc
Confidence 9888777653110 1234577876654 44444 445999999943
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.74 E-value=0.011 Score=55.15 Aligned_cols=231 Identities=12% Similarity=0.056 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCC----------------CeeEEEEeeeCCeEEEEecCC
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG----------------GFRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~s~~~ 107 (415)
...+....|+|+|+.+|...++.|.+++..+... .+.+..+. -..-..+.|+|++..|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 5678899999999999999999999998866532 22222110 011234668888766654432
Q ss_pred CCC----------------C---------------CCCeEEEEECCCCCEEE-EEE-----ccCceeEEEEcCCeE-EEE
Q 014977 108 NSQ----------------Y---------------PPTKVIIWDDHQSRCIG-EFA-----FRSDVRSVKLSRDRI-VVV 149 (415)
Q Consensus 108 d~~----------------~---------------~~~~i~vwd~~~~~~~~-~~~-----~~~~i~~l~~~~~~~-~~~ 149 (415)
|.. | ..-.+.|+|+.+++... ... ....+..+.|.+++. +++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 200 0 01245667777665431 111 245678889999888 444
Q ss_pred --e-----CCeEEEEEcCCceeeeEEeccCC----CcceEEEe-cCCCceEEEEeCCccCeEEE--EEcCCcceEEEecC
Q 014977 150 --L-----EHKIYVYSFVDLKLLHQIETLAN----LRGLCCLS-HHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAH 215 (415)
Q Consensus 150 --~-----d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~ 215 (415)
. ...+.++|..+++....+..... ......+. .+. ..++.. ...+|.-+| .+..+...+.+...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~-~~~l~~-s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG-NEFLWI-SERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS-SEEEEE-EETTSSEEEEEEETTSSEEEESS-S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC-CEEEEE-EEcCCCcEEEEEcccccceeccccC
Confidence 1 23567778877655433322211 11222332 333 334333 336776666 55666666677766
Q ss_pred ccceEE-EEeCCCCCEEE-EEeCCC--c-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 216 DSHIAC-FTLTLDGLLLA-TASTRG--T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 216 ~~~i~~-l~~sp~g~~l~-s~s~dg--~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
.-.|.. +.++++++.|. ++..++ . .|+.-++..+..+..+... ......+.|||++++++..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence 777754 67888877554 454422 2 2666666624445566542 2222689999999988754
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.69 E-value=0.021 Score=49.87 Aligned_cols=197 Identities=11% Similarity=0.117 Sum_probs=103.1
Q ss_pred eccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEE
Q 014977 82 DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIY 155 (415)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~ 155 (415)
.+.+-...+..+.|.++ +.+++..... +.|..++. +|+.++.+.. .+...+|++..++.+++ .++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 34444455888999985 5566666655 88988885 6889988873 46788999999998888 378899
Q ss_pred EEEcCCc------eeeeEEe--cc-CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC----cceEEEe--------c
Q 014977 156 VYSFVDL------KLLHQIE--TL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLIN--------A 214 (415)
Q Consensus 156 iwd~~~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~--------~ 214 (415)
++++... .....+. .. ......-.+++++.+..++++ .+..-..++.... ..+.... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccc
Confidence 9988321 1112222 11 122234556666554333332 2343444433322 1111111 1
Q ss_pred CccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEec--CCCc-----ccEEEEEeCCCCCEEEEEeCCCeEE
Q 014977 215 HDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRR--GVDR-----AEIYSIALSPNVQWLAVASDKGTVH 286 (415)
Q Consensus 215 ~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~~~-----~~v~~l~~spdg~~l~s~s~dg~i~ 286 (415)
.-..+.+++++|.. .+++....... |..+| .+|+.+..+.- +.|. ...-.|+|.++|++. ..++-+..+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy 245 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFY 245 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEE
Confidence 23457789999864 55666666666 99999 67887665543 1111 246789999999654 556777666
Q ss_pred EE
Q 014977 287 IF 288 (415)
Q Consensus 287 vw 288 (415)
+|
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.64 E-value=0.005 Score=58.55 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=55.3
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
.+.+.+++|+...++. |+.||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvl-GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVL-GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEE-EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 4555666666666766 77999999998876654433 34566789999999999999999999 999998644
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0015 Score=63.88 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=72.5
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
.+++. |..+|.|++....+.. .....|... ..+|.++++|+.||. |.|-.+-+.+...++. ...++.+
T Consensus 50 ~~~~~-GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiks 117 (846)
T KOG2066|consen 50 KFFAL-GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKS 117 (846)
T ss_pred ceeee-ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCccee
Confidence 45666 8899999998877776 444445443 678999999999999 9999998888777666 4458999
Q ss_pred EEeCCC-----CCEEEEEeCCCeEEEEEce
Q 014977 267 IALSPN-----VQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 267 l~~spd-----g~~l~s~s~dg~i~vwd~~ 291 (415)
++++|+ .+.+++|+..| +.++.-+
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhh
Confidence 999998 56788999888 7777643
No 350
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.59 E-value=0.037 Score=51.40 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=99.9
Q ss_pred CCCEEEEEe--CCcEEEEEccCC--ceeEEEeccC-------CCeeEEEEeeeCCeEEEEecCCCC-CCCCCeEEEEECC
Q 014977 55 DYGCFAAGT--SCGFRIYNCEPF--KETFRRDLKS-------GGFRIVEMLFRCNILALVGAGDNS-QYPPTKVIIWDDH 122 (415)
Q Consensus 55 ~g~~la~g~--d~~v~iw~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s~~~d~-~~~~~~i~vwd~~ 122 (415)
+.++|+..+ .+.|.|.|+.+. +..+.+.+.. +-.....+.--+++.+++++-.++ ....|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 466888777 889999999742 3333333211 111222223335675555432221 1244778888877
Q ss_pred CCCEEEEEEc----cCceeEEEEcCCeEEEE-----------------------eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977 123 QSRCIGEFAF----RSDVRSVKLSRDRIVVV-----------------------LEHKIYVYSFVDLKLLHQIETLANLR 175 (415)
Q Consensus 123 ~~~~~~~~~~----~~~i~~l~~~~~~~~~~-----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~ 175 (415)
+.+....... ...-.++.+.|..+.++ ...++++||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7777666652 22345566666554444 15689999999999999997765432
Q ss_pred ce--EEEecCCCceEEEEeCCccCeEEEEEc-C-C----cceEEEecC-----------------ccceEEEEeCCCCCE
Q 014977 176 GL--CCLSHHSSTSVLACPGLQRGQVRIEHF-G-L----NMIKLINAH-----------------DSHIACFTLTLDGLL 230 (415)
Q Consensus 176 ~~--~~~~~~~~~~~l~~~g~~dg~v~i~~~-~-~----~~~~~~~~~-----------------~~~i~~l~~sp~g~~ 230 (415)
.. +.+..+|+..+=.+.+....+|..|-. . + +.+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 23 445556655443322224455555433 1 1 222222211 234789999999999
Q ss_pred EEEEeC-CCcEEEEEECCCCc---EEEEEecC--------------CCcccEEEEEeCCCCCEEEEEe
Q 014977 231 LATAST-RGTLIRIFNTVDGT---RLQEVRRG--------------VDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 231 l~s~s~-dg~~I~vwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~spdg~~l~s~s 280 (415)
|..++. .|. |+.||+.+-. +..++.-+ .-.+...-+..|-||+.|...+
T Consensus 326 LYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 877664 677 9999997642 33332211 0112346678888888887654
No 351
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.58 E-value=0.07 Score=50.18 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=55.5
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe-CCC----------------CCEE-
Q 014977 215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-SPN----------------VQWL- 276 (415)
Q Consensus 215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-spd----------------g~~l- 276 (415)
....+.+|+.+|++++.|+...-|. |.++|+.++..++.+++.. ++.+.-+.- .+. ..+|
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3445788999999998888877788 9999999998888887731 122211111 111 1123
Q ss_pred EEEeCCCeEEEEEceecccC
Q 014977 277 AVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~~~~~~ 296 (415)
+-+-..|.|.||.++++.+.
T Consensus 384 IyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEeccCCeEEEEecCCCCEE
Confidence 34566899999999998865
No 352
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.53 E-value=0.063 Score=48.36 Aligned_cols=234 Identities=16% Similarity=0.150 Sum_probs=106.6
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
-...+..|.|..+..-+++|..+. |+....+++...... .. .......+.|..+..++++ .. + +.+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g-~ll 84 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------G-LLL 84 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------T-EEE
T ss_pred CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------c-eEE
Confidence 345799999997777888887765 555555444433221 11 1234556777766555443 22 3 333
Q ss_pred EECCCCCEEEEEE----ccCceeEEEEcCCeEE-EE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 119 WDDHQSRCIGEFA----FRSDVRSVKLSRDRIV-VV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 119 wd~~~~~~~~~~~----~~~~i~~l~~~~~~~~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
.....|+.-..+. .......+....++.. ++ ..+. ||...++-..-..........+..+...+++.+++++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs 162 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS 162 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence 3334454333332 2233333433333333 33 2333 3333332211111111122345666777888888763
Q ss_pred CCccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC-CCCcEEEE--EecCCCcccEEEE
Q 014977 193 GLQRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT-VDGTRLQE--VRRGVDRAEIYSI 267 (415)
Q Consensus 193 g~~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~-~~~~~~~~--~~~~~~~~~v~~l 267 (415)
..|.+.+ |+.....-... ......|.+|.|.|++.+.+.+ ..|. |++=+. ...+.... .......-.+.++
T Consensus 163 --~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 163 --SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp --TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred --CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence 5777777 66554332222 3356889999999998876654 6676 777662 22222111 1111122258999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+|.+++...++|+ .|++ +...+.|+
T Consensus 239 a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 239 AYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred EecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 9999877776555 5533 33344443
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00048 Score=65.47 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=75.4
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceE-EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
.+..+.|+|.-.++|. +..+|.|.+...+.+.+.++..+...++ +++|.|||++||.|-.||+ |++.|+.++..+..
T Consensus 22 ~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence 4556667777777776 6689999997777888888887877777 9999999999999999999 99999999988776
Q ss_pred EecCCCcccEEEEEeCC
Q 014977 255 VRRGVDRAEIYSIALSP 271 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~sp 271 (415)
+... ....|.++.|++
T Consensus 100 ~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFS-VETDISKGIWDR 115 (665)
T ss_pred cccc-cccchheeeccc
Confidence 4221 345788888864
No 354
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00033 Score=62.89 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=73.6
Q ss_pred EEcCCcceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEE
Q 014977 202 EHFGLNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV-QWLAVA 279 (415)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~ 279 (415)
...+.+....+..+...|..++|+|..+ ++..++.+.. |+|.|+++...+..+.. + ..+++++|.-|. .+|..|
T Consensus 179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence 3344445556677888999999999877 7888898888 99999999988888876 3 579999999765 467788
Q ss_pred eCCCeEEEEEceeccc
Q 014977 280 SDKGTVHIFSLRVRVV 295 (415)
Q Consensus 280 s~dg~i~vwd~~~~~~ 295 (415)
-..|.|.|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 8899999999998764
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.016 Score=58.52 Aligned_cols=129 Identities=13% Similarity=0.210 Sum_probs=87.1
Q ss_pred CeEEEEECCCCCEEEEEEccC--ceeEEEEc-------CCeEEEE-eCCeEEEEEcCCc--eeee-EEeccCCCcceEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRS--DVRSVKLS-------RDRIVVV-LEHKIYVYSFVDL--KLLH-QIETLANLRGLCCL 180 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~-------~~~~~~~-~d~~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~ 180 (415)
+.|.-.|++.|+.+.+..... +|..++-. +...++. .++.+..||.+-. +++. ............|+
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 789999999999999998433 34444322 2333444 7899999998643 2221 11111222356677
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
+...+|. ||+ |+.+|.|++++..+.. ...+.+-..+|..|..+.||++|++.+.. . +.|++.
T Consensus 584 aTt~~G~-iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t 646 (794)
T PF08553_consen 584 ATTEDGY-IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT 646 (794)
T ss_pred EecCCce-EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence 7777774 444 7899999998765543 33455678999999999999988766643 4 777765
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00051 Score=39.96 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=32.3
Q ss_pred cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
+.+..+.. |...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556665 677899999999999999999999999996
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=4.1e-05 Score=72.54 Aligned_cols=195 Identities=14% Similarity=0.189 Sum_probs=115.0
Q ss_pred EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE-EEEE--ccCceeEEEEcCC-eEEEE-------eCCeEEEEE
Q 014977 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEFA--FRSDVRSVKLSRD-RIVVV-------LEHKIYVYS 158 (415)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~--~~~~i~~l~~~~~-~~~~~-------~d~~i~iwd 158 (415)
+++..+..+..+++.|..+ |.|.+-.++....- .++. +....++++|++- ...++ .|..+.|||
T Consensus 61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3344444454566666665 88888876554322 3333 6778899999884 33333 478899999
Q ss_pred cCCc--ee--eeEEec-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCC-CCCEEE
Q 014977 159 FVDL--KL--LHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLA 232 (415)
Q Consensus 159 ~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~ 232 (415)
+.++ .+ ...+.. ... ....++|..+.+++. +|.....+.+.+.+.............+..+..+| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~--gqns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLD--GQNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCcccccccccccc--CccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 9765 11 111222 111 222445555555554 48778788886666444333333344566677888 777888
Q ss_pred EEeCCCcEEEEEEC-CCCc-EEEEEecCC--CcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecc
Q 014977 233 TASTRGTLIRIFNT-VDGT-RLQEVRRGV--DRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRV 294 (415)
Q Consensus 233 s~s~dg~~I~vwd~-~~~~-~~~~~~~~~--~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~ 294 (415)
+-. ||. |.+||. ..-+ ++..+.... ....+..++|+|... .+++.+ ..++|+++|+....
T Consensus 213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 766 888 999993 3222 222222100 112488999999533 344444 45789999987644
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00071 Score=65.14 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=85.4
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE-
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL- 252 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~- 252 (415)
...++... ..+++. |+.-|.++++...+...+.++. ..+.+..+..+++..++|.|+..|. |.++-+..+.+.
T Consensus 37 ~lTc~dst--~~~l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 37 KLTCVDAT--EEYLAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD 112 (726)
T ss_pred EEEEeecC--CceEEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence 34455444 456766 7789999999888877666554 5566777888999988999998888 999987664321
Q ss_pred --EEEe-cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 253 --QEVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 253 --~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
..-. ...|...|++++|++++..+++|...|.|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 112567899999999999999999999999998888
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.38 E-value=0.035 Score=51.87 Aligned_cols=170 Identities=11% Similarity=0.077 Sum_probs=89.4
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC---------------Ccc
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN---------------LRG 176 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~ 176 (415)
+.+.++|+.+++..........+....|+|+|..++ .++.|+++++.+++..+.-..... ...
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 688999999876554444567899999999999988 899999999877644332211110 001
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--cc---ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DS---HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
..++-|+|+++.||+.-..+..|.. +...... .. .+..+.+---|.-... -. +.|+|+.+++.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~----v~-l~v~~~~~~~~ 170 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPR----VS-LFVVDLASGKT 170 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---E----EE-EEEEESSSTCC
T ss_pred ccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCc----eE-EEEEECCCCcE
Confidence 2344566666677663322322222 1111111 11 2233333212221111 12 77789988865
Q ss_pred EE-EEec--CCCcccEEEEEeCCCCCEEEEE--eCCC---eEEEEEceeccc
Q 014977 252 LQ-EVRR--GVDRAEIYSIALSPNVQWLAVA--SDKG---TVHIFSLRVRVV 295 (415)
Q Consensus 252 ~~-~~~~--~~~~~~v~~l~~spdg~~l~s~--s~dg---~i~vwd~~~~~~ 295 (415)
.. .... ......+..+.|.++++.|+.. ..+. .+.++|..+++.
T Consensus 171 ~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 171 TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 31 2220 1134578999999999844433 2222 466666666543
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.38 E-value=0.00061 Score=39.60 Aligned_cols=37 Identities=30% Similarity=0.617 Sum_probs=32.8
Q ss_pred ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 208 MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
....+..|...|.++.|++++.++++++.|+. +++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 45566788899999999999999999999999 99996
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.027 Score=41.90 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=48.3
Q ss_pred eEEEEeCC---CC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 219 IACFTLTL---DG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 219 i~~l~~sp---~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
|++|++.. +| ..|++|+.|.. |++|+ ..+.+.++.. ...|+.|.-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 45555543 44 47999999999 99997 4577777774 457888877666 56788888999988864
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.35 E-value=0.08 Score=45.43 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=25.6
Q ss_pred EeCCCCEEEEEe-CCcEEEEEccCCceeEEEec
Q 014977 52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL 83 (415)
Q Consensus 52 ~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~ 83 (415)
..+++.++.+|+ |+..+..|..+...++....
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 457888999999 99999999888777776443
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.34 E-value=0.091 Score=45.95 Aligned_cols=195 Identities=14% Similarity=0.040 Sum_probs=95.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
..+-...+..++|+|+...|++-. .+.|..++.+ ++.+.+..+ .+....-.+.+..++.++++...+ +.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~g~~D~EgI~y~g~~~~vl~~Er~-----~~L~ 89 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-DGFGDYEGITYLGNGRYVLSEERD-----QRLY 89 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS-SSEEEEEE-STTEEEEEETTT-----TEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-CCCCCceeEEEECCCEEEEEEcCC-----CcEE
Confidence 344455699999999866555544 5555555543 233333444 334455667788888888887666 8999
Q ss_pred EEECCCCC------EEEEEE------ccCceeEEEEcCC-eEEEE--eCCeEEEEEcCC---ceeeeEEe--cc----CC
Q 014977 118 IWDDHQSR------CIGEFA------FRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVD---LKLLHQIE--TL----AN 173 (415)
Q Consensus 118 vwd~~~~~------~~~~~~------~~~~i~~l~~~~~-~~~~~--~d~~i~iwd~~~---~~~~~~~~--~~----~~ 173 (415)
++++.... ....+. ....+..++|++. +.+++ ...-..+|.+.. ...+.... .. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 88873321 122232 2356889999985 33333 344444554432 11111111 00 01
Q ss_pred CcceEEEecCCCc-eEEEEeCCccCeEEEEEcCCcceEEEecCc---------cceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 174 LRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 174 ~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
.....+++++|.. .+++. +..+..+...+..++.+..+.-.. ...-.|+|.++|++.++ ++-+. .++
T Consensus 170 ~~d~S~l~~~p~t~~lliL-S~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-fy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLIL-SDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-FYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEE-ETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-EEE
T ss_pred eccccceEEcCCCCeEEEE-ECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-EEE
Confidence 1122334444443 34443 556777777888887766654332 24678999999975554 45554 555
Q ss_pred E
Q 014977 244 F 244 (415)
Q Consensus 244 w 244 (415)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.022 Score=42.35 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL 177 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (415)
..|+.|++| ..|++|+ ..+.+.++.....|..+.-...+++.. .+|+|-+|+- .+.+..++....+...
T Consensus 16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 456666666 9999998 558888999889999999888877666 7999999984 3455556555555555
Q ss_pred EEEecCCCceEEEEeCCccCeEEE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRI 201 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i 201 (415)
..+..+.++..-+.+|-.+|.|-+
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEEe
Confidence 556666655443344777777643
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.00066 Score=66.66 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=80.2
Q ss_pred ecCCCceEEEEeC---CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 181 SHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 181 ~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+|+|...+++++. ...|.|.|+..++++.+... ..-.+++++|+|..-.|+.|-.-|. +.+|...+.+.-.....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTETHTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCceeeeeccC
Confidence 4444455555422 35678888877776543322 1223467999999988999999998 99999766554433333
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
|..+|..+.||++|..|+++..-|.|.+|...-
T Consensus 100 --h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 100 --HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred --CCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 889999999999999999999999999999874
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.32 E-value=0.08 Score=44.73 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=113.5
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee----CCeEEEEecCCCCCCCCCeEEEEEC--CCCCEEE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR----CNILALVGAGDNSQYPPTKVIIWDD--HQSRCIG 128 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~~~~~~i~vwd~--~~~~~~~ 128 (415)
+.++.+-- .+.|.-||.+.. ...+..+.... ...+.+. ++ .+.+.++.. -.|.-||- +.....+
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn-~v~ra~ie~p~--~ag~ilpv~~~~q-~~~v~~G~k-----f~i~nwd~~~~~a~v~~ 97 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQN-KVYRAKIEGPP--SAGFILPVEGGPQ-EFAVGCGSK-----FVIVNWDGVSESAKVYR 97 (310)
T ss_pred ceEEEEEeccCceehhhhhhh-heEEEEEecCc--ceeEEEEecCCCc-eEEEeecce-----EEEEEcccccceeeeee
Confidence 34555544 777777998763 33444442222 2222222 22 334444432 45666773 2233333
Q ss_pred EE---E---ccCceeEEEEcCCeEEEE------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 129 EF---A---FRSDVRSVKLSRDRIVVV------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 129 ~~---~---~~~~i~~l~~~~~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
++ + .....++-..+|+|++.+ ..+.++.|-.. ..+..+...-. -...++|+.+.+.+.
T Consensus 98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~--IsNgl~Wd~d~K~fY 173 (310)
T KOG4499|consen 98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVG--ISNGLAWDSDAKKFY 173 (310)
T ss_pred eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhcc--CCccccccccCcEEE
Confidence 32 1 245667778899999876 13556666532 11212211111 234567777777777
Q ss_pred EeCCccCeEEEEEcCC--------cceEEEecC---cc-ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 191 CPGLQRGQVRIEHFGL--------NMIKLINAH---DS-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~--------~~~~~~~~~---~~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
+.-+.+-+|.-|+.+. +.+..++.. .. ..-.+++..+|.+.++.-..++ |...|..+|+.+.+++-
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl- 251 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL- 251 (310)
T ss_pred EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc-
Confidence 7777777777776432 222222221 11 1234555668887777777777 99999999999999987
Q ss_pred CCcccEEEEEeCC
Q 014977 259 VDRAEIYSIALSP 271 (415)
Q Consensus 259 ~~~~~v~~l~~sp 271 (415)
....|++++|--
T Consensus 252 -Pt~qitsccFgG 263 (310)
T KOG4499|consen 252 -PTPQITSCCFGG 263 (310)
T ss_pred -CCCceEEEEecC
Confidence 456899999964
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.024 Score=53.32 Aligned_cols=136 Identities=15% Similarity=0.296 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE----eCCccCeEEEEEcCCcc---eEEEecC----ccce
Q 014977 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC----PGLQRGQVRIEHFGLNM---IKLINAH----DSHI 219 (415)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~dg~v~i~~~~~~~---~~~~~~~----~~~i 219 (415)
...++-.|++.|+.+..+..+.. +..+.+.++.++..|.. .|-.+..|.-|+.+.+- +...+.| ....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35688888999999988877665 56666666554433311 13345555555554322 2222333 2345
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.|.+-..+| ++++|+.+|. |++||- .+...+ .+++ ...+|..+..+.||++|+..+ +..+.+.++.-.
T Consensus 434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~k 502 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTLIK 502 (644)
T ss_pred ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEecc
Confidence 666666666 7999999999 999996 554433 3444 667899999999999987554 667888887653
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.29 E-value=0.22 Score=49.15 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=126.1
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCe--eEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF- 132 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~- 132 (415)
.++.++ ++.+.-.|.++++.+....+..... .+.+ .... ++.+++.......-.++.|..+|.++|+.+..+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 455566 8888888988888776654321111 1111 1111 34444433210000238999999999999887652
Q ss_pred -cC------------------------------ce-eEEEEcCCeEEEE--e-----------------CCeEEEEEcCC
Q 014977 133 -RS------------------------------DV-RSVKLSRDRIVVV--L-----------------EHKIYVYSFVD 161 (415)
Q Consensus 133 -~~------------------------------~i-~~l~~~~~~~~~~--~-----------------d~~i~iwd~~~ 161 (415)
.. .+ ..+.+.+...++. . ...|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 11 00 1234555433333 1 12677888999
Q ss_pred ceeeeEEeccCCCc---------ceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEE--------Ee---c-Cc-cc
Q 014977 162 LKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKL--------IN---A-HD-SH 218 (415)
Q Consensus 162 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~--------~~---~-~~-~~ 218 (415)
|+..-.++...+.. ..+.+..+....-++..+..+|.+++.+. +++.+.. .. . .. .+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 99887776533322 12222223322234445778999988544 4544311 10 0 00 00
Q ss_pred e----------------------------EEEEeCCCCCEEEEEeCC---------------------------------
Q 014977 219 I----------------------------ACFTLTLDGLLLATASTR--------------------------------- 237 (415)
Q Consensus 219 i----------------------------~~l~~sp~g~~l~s~s~d--------------------------------- 237 (415)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 125666665555443322
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|. |.-+|+.+|+.+........ ...+. ..-.+.+++.++.+|.++.+|.++|+..
T Consensus 441 g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 441 GS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred ee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 44 77788888888776653211 11111 1124556777888999999999999853
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.25 E-value=0.29 Score=49.84 Aligned_cols=228 Identities=14% Similarity=0.198 Sum_probs=138.7
Q ss_pred CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC---------CCCCCCeEEEEECCCCCEE
Q 014977 57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN---------SQYPPTKVIIWDDHQSRCI 127 (415)
Q Consensus 57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------~~~~~~~i~vwd~~~~~~~ 127 (415)
..|+.+..+.+++..++..+++..+++ .-......+++.+....+...+.. +.+.-..++++|-++-+.+
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 466777788888888887666555444 333344556666533333322211 1112246788887777666
Q ss_pred EEEEc-----cCceeEEEEcCC-eEEEE-------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 128 GEFAF-----RSDVRSVKLSRD-RIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 128 ~~~~~-----~~~i~~l~~~~~-~~~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
...++ ...|.+..|..| +.+++ ..|.|.+|.+..++.+.....+.-...+.++..- ++++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence 65552 223445557665 44333 2588999988775544444333222234444433 4567
Q ss_pred EEEeCCccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--CcEEEEEecCCCcccEE
Q 014977 189 LACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~~v~ 265 (415)
+|. -+..|+++.+..+ .++.-..+..++..+.+.-.|..+++|.--+. +.+.-.+. |... .+...-+....+
T Consensus 843 lA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wmt 917 (1096)
T KOG1897|consen 843 LAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWMT 917 (1096)
T ss_pred EEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCcccee
Confidence 754 4568999777765 55555678889999999999999999998887 77655443 3343 333333566778
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
++.+-.+ ..++.+..+|.+++-..++
T Consensus 918 aveil~~-d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 918 AVEILDD-DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred eEEEecC-ceEEeecccccEEEEEecC
Confidence 8887555 4455667788888876664
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.22 E-value=0.2 Score=47.26 Aligned_cols=234 Identities=16% Similarity=0.100 Sum_probs=112.7
Q ss_pred ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC---
Q 014977 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--- 121 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~--- 121 (415)
.|+.++|+++..-|++|. .|.|.||.+...+..-... ......+.+.+ +-..... ..-+.|-+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~----~~~~~~~----~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRR----FSLNNSP----GKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S------GGGSS-----SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC----CCcccCccccc----ccccCCC----cceEEehhhCCc
Confidence 589999999999999999 9999999987533211000 00011111100 0000000 011111111
Q ss_pred --CCC-CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccC------CC--cceEEEe---cCC
Q 014977 122 --HQS-RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA------NL--RGLCCLS---HHS 184 (415)
Q Consensus 122 --~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~--~~~~~~~---~~~ 184 (415)
+.| .+...+. ..++|++++.+.-|...+ .+|.+.|.|++....+..-.... .. +..+.|. ...
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 111 1222222 478999999998887777 68999999998887776532222 11 1122222 222
Q ss_pred C--ceEEEEeCCccCeEEEEEcC----Ccc----eEEEecCccceEEEE-eCCC-----------------C----CEEE
Q 014977 185 S--TSVLACPGLQRGQVRIEHFG----LNM----IKLINAHDSHIACFT-LTLD-----------------G----LLLA 232 (415)
Q Consensus 185 ~--~~~l~~~g~~dg~v~i~~~~----~~~----~~~~~~~~~~i~~l~-~sp~-----------------g----~~l~ 232 (415)
+ ...++.+|...|.+.++... +.- ......+.++|..|. ++.+ | .+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 2 23444457788988885432 111 111224556665554 3211 1 1444
Q ss_pred EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe-----CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-----SPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-----spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+++ +.. ++++...+.+..++... ..-....+.+ ...+..|++-..+|.|++|.+..-+.
T Consensus 231 vvS-e~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVS-ESD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE--SSE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEc-ccc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 444 455 99999988877655543 3223334444 23567888999999999999877653
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.23 Score=47.46 Aligned_cols=199 Identities=10% Similarity=0.064 Sum_probs=101.9
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--------e------CCeE
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------L------EHKI 154 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------~------d~~i 154 (415)
.+..+.++|++..++-+-+...-....|+++|+++|+.+...-.......+.|.+++..++ . ...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3346778888866553211100012579999999997765432222223499999977665 1 3358
Q ss_pred EEEEcCCceee--eEEeccCCCcceEEEecCCCceEEEEeCC--cc-CeEEEEEcCC-----cceEEEecCccceE-EEE
Q 014977 155 YVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGL--QR-GQVRIEHFGL-----NMIKLINAHDSHIA-CFT 223 (415)
Q Consensus 155 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~d-g~v~i~~~~~-----~~~~~~~~~~~~i~-~l~ 223 (415)
+.|.+.+...- ..+.........+.+..+.++++++.... .+ ..+.+-+... .....+......+. .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88898765432 34444444433566666777777654322 22 3455533333 24444544444443 343
Q ss_pred eCCCCCEEEEEeC---CCcEEEEEECCCCcE---EEEEecCCCcccEEEEEeCCCCCEEE-EEeCCC--eEEEEEce
Q 014977 224 LTLDGLLLATAST---RGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIALSPNVQWLA-VASDKG--TVHIFSLR 291 (415)
Q Consensus 224 ~sp~g~~l~s~s~---dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg--~i~vwd~~ 291 (415)
.. .+.+++.... ++. |.-.++..... ...+..+.....+..+.. .+.+|+ ..-.++ .|+++++.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred cc-CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 33 4444444332 345 66677776652 224443212224555554 344444 444454 58888888
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0024 Score=64.52 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=72.4
Q ss_pred eEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-cc
Q 014977 187 SVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AE 263 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~ 263 (415)
..+++ |+..|.+...+.++. +...-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..
T Consensus 100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccce
Confidence 34555 667777877555443 22222334679999999999999999999999 999999999998888763222 13
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|..+.+..++..+.++...|. +|++.-.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 334445556667778777774 78776544
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.069 Score=53.09 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=60.3
Q ss_pred EEecCCCceEEEEeCC-----ccCeEEEE--EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE-------
Q 014977 179 CLSHHSSTSVLACPGL-----QRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF------- 244 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~-----~dg~v~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw------- 244 (415)
....++++..+++... .|..-.|| ...+.. ..+..- .....-.|+|+|..|++.......+++.
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 3444556666666541 23333444 333333 333222 2378889999998887775432213333
Q ss_pred ----ECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 245 ----NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 245 ----d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
++..++... . ....|..+.|||||..|+... +|.|++=-+..
T Consensus 432 l~~~~vd~ge~~~---~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 432 LARTPVDASAVAS---R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred EEEEeccCchhhh---c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 333332221 1 245799999999999998766 57787744444
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.06 E-value=0.37 Score=47.49 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=103.2
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEE----------EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIV----------EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
..+.+++ ++.|.-.|..+++.+.+...... ..+. .+.... +.+++. ..+ +.|.-.|.++|+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~~-~~v~v~-t~d-----g~l~ALDa~TGk 141 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALYD-GKVFFG-TLD-----ARLVALDAKTGK 141 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEEC-CEEEEE-cCC-----CEEEEEECCCCC
Confidence 3455555 78888888888777776544211 1110 112222 333333 333 899999999999
Q ss_pred EEEEEEccC-----ceeE-EEEcCCeEEEE-e-------CCeEEEEEcCCceeeeEEeccCCCc----------------
Q 014977 126 CIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLR---------------- 175 (415)
Q Consensus 126 ~~~~~~~~~-----~i~~-l~~~~~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~---------------- 175 (415)
.+....... .+.+ -.+. ++.+++ . ++.|+.+|.++|+.+-.+..-....
T Consensus 142 ~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 142 VVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred EEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 988876211 1211 1122 444444 1 5889999999999887664321110
Q ss_pred --------------ceEEEecCCCceEEEEeCCc----------------cCeEEEEEcCCcceEEEecCccce------
Q 014977 176 --------------GLCCLSHHSSTSVLACPGLQ----------------RGQVRIEHFGLNMIKLINAHDSHI------ 219 (415)
Q Consensus 176 --------------~~~~~~~~~~~~~l~~~g~~----------------dg~v~i~~~~~~~~~~~~~~~~~i------ 219 (415)
.-..++.+++..++....+. +..|.|+..+++..-.++.....+
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 00122445444444332111 123444555566655554322111
Q ss_pred ---EEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEE
Q 014977 220 ---ACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 220 ---~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
.-+.+..+|+ .++.+..+|. +++.|-.+|+.+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 1223334676 7889999999 999999999986
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.012 Score=55.21 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=94.7
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeE---------EEE-eCCeEEEEEcCCc-e-eeeE
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI---------VVV-LEHKIYVYSFVDL-K-LLHQ 167 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~---------~~~-~d~~i~iwd~~~~-~-~~~~ 167 (415)
.++.+++.. ..|+-.|++.|+.+.+......|.-+.+.|+.. ++. .++.|.-||.+-. + .+..
T Consensus 347 lil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 347 LILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred eEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 445555544 788999999999999999766688888887643 333 7889999998532 2 2222
Q ss_pred EeccC--CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977 168 IETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (415)
Q Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (415)
.+.+. ......|++...+| +|++ |+.+|.|++++..+... ..+.+-..+|..|..+.+|++|+..+. .. +.+-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLLI 497 (644)
T ss_pred eeccccccccccceeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEEE
Confidence 22221 12245666766666 4444 78999999988765443 446778899999999999998776553 34 6666
Q ss_pred EC
Q 014977 245 NT 246 (415)
Q Consensus 245 d~ 246 (415)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.32 Score=45.93 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=131.8
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecC--CCCCCCCCeEEEEE
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAG--DNSQYPPTKVIIWD 120 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~~~~~~i~vwd 120 (415)
.-..+++++.+..+.+.. ++.|.+.|..+......... +. ....+.+++++. +.++.. .+ +.+.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEe
Confidence 345778888888655544 78999999776554433322 22 455667777663 333332 24 8999999
Q ss_pred CCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee-E----EeccCCCcceEEEecCCCceEEEE
Q 014977 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-Q----IETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
..+++.+....-...-..++++|++..+. .++.|.+.|........ . +..... .....+.++....+++.
T Consensus 147 ~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 147 AATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVAN 225 (381)
T ss_pred CCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEe
Confidence 99999888855332238999999998665 48899999976655442 1 111111 13344555544444443
Q ss_pred eCCccCeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcEEEEEecCCCc-ccEEEE
Q 014977 192 PGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDR-AEIYSI 267 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l 267 (415)
.++.++.+..-+.....+... .........+.++|+|+.+.+.... +. +.+.|..+......+..+... ..+..+
T Consensus 226 ~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred ccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceec
Confidence 332235666644444333332 1111145678899999998887555 56 999999888877766543221 235555
Q ss_pred EeCCC
Q 014977 268 ALSPN 272 (415)
Q Consensus 268 ~~spd 272 (415)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 55543
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.98 E-value=0.22 Score=43.53 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=110.6
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCc--eeEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD--VRSVKLSRDRIVVV--LEHKIYVYSFV 160 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~~--~d~~i~iwd~~ 160 (415)
....-.-.+.|..++.++-+.+.. ....|+.+|+.+++.......... -..++...|..+.+ .++...+||..
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc
Confidence 444445567776667777666653 335899999999998888774333 34566667766666 79999999999
Q ss_pred CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecC--cc---ceEEEEeCCCCCEEEEE
Q 014977 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--DS---HIACFTLTLDGLLLATA 234 (415)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~ 234 (415)
+.+.+.++.-... -..++.+.+ .|+.+-+ ...++..+. +.+..+.+... .. .++-+.+- +|.+.|=.
T Consensus 119 tl~~~~~~~y~~E---GWGLt~dg~--~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPYPGE---GWGLTSDGK--RLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp TTEEEEEEE-SSS-----EEEECSS--CEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred cceEEEEEecCCc---ceEEEcCCC--EEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 9999988865432 233444433 3444322 345555443 33444444332 22 34556664 67666655
Q ss_pred eCCCcEEEEEECCCCcEEEEEecC----------C---CcccEEEEEeCCCCCEEEEEe
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRG----------V---DRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~----------~---~~~~v~~l~~spdg~~l~s~s 280 (415)
-.... |...|..+|+....+.-. . ...-.+.|++.|....|...+
T Consensus 192 W~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55666 888999999988766320 0 124689999998766555444
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.96 E-value=0.26 Score=44.11 Aligned_cols=217 Identities=17% Similarity=0.178 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE----
Q 014977 54 QDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG---- 128 (415)
Q Consensus 54 p~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~---- 128 (415)
..++.|+.|+++++.+++.. ..+... . .....+..+...++...++.-.+ +.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~--i--~~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTR--I--LKLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCcccee--E--eecceEEEEEEecccCEEEEEcC------CccEEEEchhhcccccccc
Confidence 35788999995559999983 222211 1 12223777777775444443332 899999976543333
Q ss_pred -----------EEEccCceeEEE---EcCCeEEEE--eCCeEEEEEcCCc-----eeeeEEeccCCCcceEEEecCCCce
Q 014977 129 -----------EFAFRSDVRSVK---LSRDRIVVV--LEHKIYVYSFVDL-----KLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 129 -----------~~~~~~~i~~l~---~~~~~~~~~--~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
.+.....+...+ -......++ ...+|.+|..... +..+.+.... .+..+.+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~---~~~~i~~~~~-- 149 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD---PPSSIAFLGN-- 149 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC---CcEEEEEeCC--
Confidence 122233444444 122333333 6779999887542 4555555543 3444555433
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEecC------------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE--
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ-- 253 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~-- 253 (415)
.+++ |..++...++..++.....+... ..++..+.. +++.+|++-. .. -.+.|. .|+..+
T Consensus 150 ~i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~-g~fv~~-~G~~~r~~ 223 (275)
T PF00780_consen 150 KICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NI-GVFVNK-NGEPSRKS 223 (275)
T ss_pred EEEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ce-EEEEcC-CCCcCccc
Confidence 3443 44555444444433332222111 123333443 3456665432 22 334443 554433
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
.+.. ...+.++++. ..+|++...+ .|.||++.+++..+
T Consensus 224 ~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 224 TIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQ 261 (275)
T ss_pred EEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEE
Confidence 4443 2245566663 3577776654 49999999997643
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.72 E-value=0.49 Score=43.78 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=107.1
Q ss_pred EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC---C--------------CC
Q 014977 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---N--------------SQ 110 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d--------------~~ 110 (415)
...++|+.+.++.-. ...++-.|+++.+......++..-.....+.-+.+...++.... + .+
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 456678888776554 66788888888766555444333333233333334443333211 1 00
Q ss_pred CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-------eCC-eEEEEEcC-CceeeeEEeccCCCcceEEEe
Q 014977 111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-------LEH-KIYVYSFV-DLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-------~d~-~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 181 (415)
-....|.-.|+.+|+....+.....+..+.|+|....++ .+. .-+||-+. ++.....+..+.....+--=-
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 123577788899998877777888889999999655444 122 13555552 333333333332211222222
Q ss_pred cCCCceEEEEeCC----ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC---------------cEEE
Q 014977 182 HHSSTSVLACPGL----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---------------TLIR 242 (415)
Q Consensus 182 ~~~~~~~l~~~g~----~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------------~~I~ 242 (415)
|.++|..|.+.+. .+..|.-.+........+. ...+...+-.++||++++-=+.|. ..|+
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 3455555554322 1222222333322222221 112333455678999876533332 1267
Q ss_pred EEECCCCcEEEEEecC---------CCcccEEEEEeCCCCCEEEE-EeCCCeEEEEEceec
Q 014977 243 IFNTVDGTRLQEVRRG---------VDRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVR 293 (415)
Q Consensus 243 vwd~~~~~~~~~~~~~---------~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~ 293 (415)
+++++.++... +..+ .....=-...|+|||++++- +...|...||-++-.
T Consensus 324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 78887765432 2211 00111246789999998774 555777777765543
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.71 E-value=0.37 Score=42.16 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=109.1
Q ss_pred CCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
..-...+.|..+|.++-+.+ ...|+.+|+++++......+ ....---.+....+..+..+--. +...+||
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGITILGDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSS------SEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeEEEECCEEEEEEecC------CeEEEEc
Confidence 34466788877787777665 44689999999877666666 33333344555677777777554 9999999
Q ss_pred CCCCCEEEEEEccCceeEEEEcCCeEEEEeC--CeEEEEEcCCceeeeEEeccCCC--c-ceEEEecCCCceEEEEeCCc
Q 014977 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLE--HKIYVYSFVDLKLLHQIETLANL--R-GLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~g~~ 195 (415)
..+-+.+.++.....=..++...+ .++..| ..++.+|..+.+....+...... + ....+.+. +|.+.|-.=..
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred cccceEEEEEecCCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 999999999997777778884433 344444 57888998888777766543221 1 22333333 34444444445
Q ss_pred cCeEEEEEcCCcceEEEec---------------CccceEEEEeCCCCCEEEEEeC
Q 014977 196 RGQVRIEHFGLNMIKLINA---------------HDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~~---------------~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
|..++|+..++..+..+.. ...-.+.||++|....|...+.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5556666666655544421 1245789999887765554443
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.69 E-value=0.0085 Score=37.17 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=30.0
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
....|..++|+|...+||.++.+|.|.+|++ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999999 444
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.21 Score=49.76 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=96.8
Q ss_pred CCceEEEEEeCCCCEEEEEe-------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC--CC----
Q 014977 44 EIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN--SQ---- 110 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--~~---- 110 (415)
...+.+.+++|+|+.+|... |..-.||-....+..... + ... ......|++++..+....+. ..
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence 34688999999999887543 333455544332222221 2 222 36677888886544443221 00
Q ss_pred -CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEE---EEcCCcee-e---eEEeccCCCcceEEE
Q 014977 111 -YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYV---YSFVDLKL-L---HQIETLANLRGLCCL 180 (415)
Q Consensus 111 -~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~i---wd~~~~~~-~---~~~~~~~~~~~~~~~ 180 (415)
-..+.+.+.++..+.... .....|..+.|+|||..++ .++.|++ -....|.. + ..+..... .....+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccC-Cccccc
Confidence 011345444554444333 4466899999999999888 6788887 44344431 1 01111111 123556
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCc
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGT 239 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (415)
.|.+++.+++.....+..+..-...+.....+.. ...++..|+-+++ .|+....++.
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 6777776554432222333333344433332222 2455666666653 3444455553
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.17 Score=44.21 Aligned_cols=161 Identities=10% Similarity=0.034 Sum_probs=100.4
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC--
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL-- 194 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-- 194 (415)
+.|+++........-..|.++|.....+ -.....++|..+.+....+.........-.=.+++++.+|.++-.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 5678887777777788889988654433 245678899988877766654433222222245667777765431
Q ss_pred --ccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCC-------Cc----------EEEEEECCCCcEEE
Q 014977 195 --QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTR-------GT----------LIRIFNTVDGTRLQ 253 (415)
Q Consensus 195 --~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-------g~----------~I~vwd~~~~~~~~ 253 (415)
.-|.|-||+.+. +.+-.+..|.-....+.+.+||+.|+.+... |. .+.+.|..+|+.+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 235677777664 4455677787778889999999998876531 00 13344444555443
Q ss_pred EEec--CCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 254 EVRR--GVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 254 ~~~~--~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
+..- ..+.-.|..++..+||+.++.+-..
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 3221 1234468888888888776655443
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.43 E-value=0.77 Score=42.53 Aligned_cols=219 Identities=11% Similarity=-0.036 Sum_probs=92.1
Q ss_pred EEEeCCCCEEEEEe--CCc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 50 VSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 50 l~~sp~g~~la~g~--d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
=+|.+||+.|+.++ +|. +.+.|+++.+... .+- +..........+++...++-.... ..|+..|+.+.+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTd-g~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e 113 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTD-GPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE 113 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-Ccc-CCCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence 35678997777655 655 4455666644322 221 111111122334443333222121 688889999987
Q ss_pred EEEEEEcc-CceeEEEE--cCCeEEEE-------------------------eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977 126 CIGEFAFR-SDVRSVKL--SRDRIVVV-------------------------LEHKIYVYSFVDLKLLHQIETLANLRGL 177 (415)
Q Consensus 126 ~~~~~~~~-~~i~~l~~--~~~~~~~~-------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (415)
....+... ..+-...| +.|+..++ ....|.-.|+.+|+....+.... -..-
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccC
Confidence 76666633 33322333 44555554 12356667778877655554322 1222
Q ss_pred EEEecCCCceEEEEe--CCccCe-EEEEEcC--CcceEEEecCc--cceEEEEeCCCCCEEEEEe-----CCCcEEEEEE
Q 014977 178 CCLSHHSSTSVLACP--GLQRGQ-VRIEHFG--LNMIKLINAHD--SHIACFTLTLDGLLLATAS-----TRGTLIRIFN 245 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~--g~~dg~-v~i~~~~--~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s-----~dg~~I~vwd 245 (415)
..++|...+ +|+++ |-.+.. -+||..+ +...+.+..+. ..+.-=-|.|||..|.--+ .+.. |.-+|
T Consensus 193 ~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d 270 (386)
T PF14583_consen 193 VQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYD 270 (386)
T ss_dssp EEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-
T ss_pred cccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeC
Confidence 334443322 33331 222221 2555543 33344333332 2233345899998665422 2334 77788
Q ss_pred CCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
+.+++....... .....+--++||++++-=+.|
T Consensus 271 ~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 888876433332 134566678999988754443
No 385
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.38 E-value=0.0007 Score=64.51 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=96.3
Q ss_pred ccCCCCCCceEEEEEeC-CCCEEEEEe-----CCcEEEEEccCCc--eeEEEeccC-CCeeEEEEeeeCCeEEEEecCCC
Q 014977 38 AFSDVDEIELISVSWNQ-DYGCFAAGT-----SCGFRIYNCEPFK--ETFRRDLKS-GGFRIVEMLFRCNILALVGAGDN 108 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-----d~~v~iw~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d 108 (415)
....+|....++++|++ |...||+|- |..+.|||+.+.- ..-...|.. .......++|..+..++.+|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 34567888899999998 667888875 5679999997641 111111111 22233366677777777777765
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--eCCeEEEEEc-CCc-eeeeEEeccCC--C--cceEE
Q 014977 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--LEHKIYVYSF-VDL-KLLHQIETLAN--L--RGLCC 179 (415)
Q Consensus 109 ~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~-~~~-~~~~~~~~~~~--~--~~~~~ 179 (415)
..+.++|++........-....+..+.+.| .+.+++ .|+.|.+||. ..- .++..+....+ + ...++
T Consensus 176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 789999976432221111344677788888 677777 7999999993 221 22222221111 1 33444
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcC
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFG 205 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~ 205 (415)
+.|...|. +++.....++|++++..
T Consensus 251 ycPtrtgl-la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 251 YCPTRTGL-LAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccCCcch-hhhhccCcceEEEeccc
Confidence 55544443 33334566777776654
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.7 Score=40.75 Aligned_cols=167 Identities=9% Similarity=0.013 Sum_probs=91.1
Q ss_pred CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeE-EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+-...|.++.|+|+.+.|.+-.+..-.|-.+.+.+.++ ...+ .+-...-.+.|..++.++++-..+ +.+.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~DpE~Ieyig~n~fvi~dER~-----~~l~~~ 155 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFSDPETIEYIGGNQFVIVDERD-----RALYLF 155 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccCChhHeEEecCCEEEEEehhc-----ceEEEE
Confidence 444555999999999988887774444455555444433 3333 223333456778888888888777 888888
Q ss_pred ECCCCCEEEE-----EE-----c-cCceeEEEEcCCeEEEE---eCCeEEEEEcCCce-e--eeEEeccCCC--c---ce
Q 014977 120 DDHQSRCIGE-----FA-----F-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L--LHQIETLANL--R---GL 177 (415)
Q Consensus 120 d~~~~~~~~~-----~~-----~-~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~-~--~~~~~~~~~~--~---~~ 177 (415)
.+..+..+.. +. + ......++|.|....+. ..+-+.||.+.... . ++....+... . .+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7765532222 21 2 45677899998654444 34445555543221 1 1111111111 1 12
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN 213 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~ 213 (415)
..+.+++....+.+-+.+++.+.--+..+..+..+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence 334454333333333556665555666666554443
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.19 E-value=0.02 Score=35.56 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=30.5
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
...|..++|+|...+||.++.+|. |.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence 456889999999999999999999 999998 66543
No 388
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.27 Score=40.92 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=64.4
Q ss_pred CCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977 55 DYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 55 ~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 131 (415)
+|.++.+.+ ...|++|++.+++......+.....---.+.-..+..+..+..+ +.-..+|..+-+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChHHhhhhcccc
Confidence 344444443 56799999999888877766311111112333455666666443 888899998888888888
Q ss_pred ccCceeEEEEcCCeEEEEeCC--eEEEEEcCCceeeeE
Q 014977 132 FRSDVRSVKLSRDRIVVVLEH--KIYVYSFVDLKLLHQ 167 (415)
Q Consensus 132 ~~~~i~~l~~~~~~~~~~~d~--~i~iwd~~~~~~~~~ 167 (415)
..+.=..++..... ++..|| +++.-|.++.....+
T Consensus 129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcce
Confidence 77777777655444 333444 455555555444333
No 389
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.06 E-value=0.21 Score=47.06 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=55.7
Q ss_pred EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC------CcccEEEEEeC-----CCC---CE
Q 014977 210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV------DRAEIYSIALS-----PNV---QW 275 (415)
Q Consensus 210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~s-----pdg---~~ 275 (415)
..+....++|++++.|.=| ++|.|..+|. +.|.|++....++.-.-.. ....|+++.|+ .|+ -.
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3344567899999997555 9999999999 9999998877776633211 23467888886 233 47
Q ss_pred EEEEeCCCeEEEEEce
Q 014977 276 LAVASDKGTVHIFSLR 291 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~ 291 (415)
|++|+..|.+.+|.+-
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 8899999999999986
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.95 Score=39.95 Aligned_cols=200 Identities=10% Similarity=0.084 Sum_probs=112.3
Q ss_pred EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~ 127 (415)
...+|-+.+............+|..+-.-.+..+.+.+....+.++.|+|+...|.+..+. ..-.|+=..+|+.+
T Consensus 46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~Gdli 120 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLI 120 (316)
T ss_pred eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCC-----CceEEEEecCCceE
Confidence 3344444444333322222445554422222222233445558899999988777666655 56666666889999
Q ss_pred EEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE-------Eecc-CCCcceEEEecCCCceEEEEeCC
Q 014977 128 GEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ-------IETL-ANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 128 ~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
..+. .-.....|.+..++++++ .++.++++.+.....+.. +... ....+.-.+++++....+.+ .-
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aK 199 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AK 199 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EE
Confidence 9987 345566788999999888 577888887754322111 1111 11345566777777666655 33
Q ss_pred ccCeEEEEEcCCcc----eEEEecC-------ccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 195 QRGQVRIEHFGLNM----IKLINAH-------DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 195 ~dg~v~i~~~~~~~----~~~~~~~-------~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
+..-+.|+..+... ......+ -..+.++.|++ .+.+|+-+.+++. +.-.|. +|+.+..+
T Consensus 200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~l 270 (316)
T COG3204 200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELL 270 (316)
T ss_pred ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeE
Confidence 44555553333211 1111111 23466778886 4556666777776 777775 55554433
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.022 Score=47.85 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=68.6
Q ss_pred EEEeCCccCeEEEEEcCC--cceEEEecCccceE-EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-ccE
Q 014977 189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEI 264 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v 264 (415)
+++ |..+|.|++|.... ............|. .|.--.++.+..+++.||. |+.|++.-++.+..... |. .++
T Consensus 73 ~~v-G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~ 148 (238)
T KOG2444|consen 73 LMV-GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESG 148 (238)
T ss_pred EEe-ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCc
Confidence 444 77899999966652 22111111222222 2223345668899999999 99999988887765554 44 456
Q ss_pred EEEEeCCCCCEEEEE--eCCCeEEEEEceecccC
Q 014977 265 YSIALSPNVQWLAVA--SDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 265 ~~l~~spdg~~l~s~--s~dg~i~vwd~~~~~~~ 296 (415)
..+..+..+++|+.+ |.|..++.|++..-...
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 666666777788877 88888888888776543
No 392
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.79 Score=38.27 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=90.5
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-Ccee--EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC
Q 014977 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVR--SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~i~--~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
+.++.+.+.. ....|++||+.+|+.+...... ..+. .+.-..|..+.. .++...++|..+.+.+..+.-..
T Consensus 56 g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G- 131 (262)
T COG3823 56 GHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG- 131 (262)
T ss_pred CEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-
Confidence 3556555542 3478999999999988776633 2222 122233444444 68999999998888877665433
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEE-E--EcCCcceEEEe--cCccce---EEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRI-E--HFGLNMIKLIN--AHDSHI---ACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~--~~~~~~~~~~~--~~~~~i---~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
.-..+..+..+ |+. + ||+-.+ | ..+......+. ....+| +-+.|- +|.+.|-.-.+.. |...|
T Consensus 132 --eGWgLt~d~~~--Lim-s--dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~-I~rI~ 202 (262)
T COG3823 132 --EGWGLTSDDKN--LIM-S--DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTR-IARID 202 (262)
T ss_pred --cceeeecCCcc--eEe-e--CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecc-eEEEc
Confidence 23455555544 333 2 343333 1 11212222111 112222 223332 5555554444444 66666
Q ss_pred CCCCcEEEEEec----------CCCcccEEEEEeCCCC-CEEEEE
Q 014977 246 TVDGTRLQEVRR----------GVDRAEIYSIALSPNV-QWLAVA 279 (415)
Q Consensus 246 ~~~~~~~~~~~~----------~~~~~~v~~l~~spdg-~~l~s~ 279 (415)
..+|+.+..+.. ..+....+.+++.|++ +++++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 677766655432 1134467889999987 455555
No 393
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.69 E-value=1.6 Score=39.71 Aligned_cols=199 Identities=11% Similarity=0.059 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-
Q 014977 47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH- 122 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~- 122 (415)
...++++.||+++.+.. ...|.|-|++..+...+.... + +..+-..++..+..-|++ |.+....+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~ 166 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGD------GSLLTVTLDA 166 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETT------SCEEEEEETS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecC------CceEEEEECC
Confidence 34558899999998876 778999999876655444331 1 222223333334444443 888777776
Q ss_pred CCCEEEEEE--c---cCce-eEEEEc-CCeEEEE--eCCeEEEEEcCCcee--eeEEecc----------CCCcceEEEe
Q 014977 123 QSRCIGEFA--F---RSDV-RSVKLS-RDRIVVV--LEHKIYVYSFVDLKL--LHQIETL----------ANLRGLCCLS 181 (415)
Q Consensus 123 ~~~~~~~~~--~---~~~i-~~l~~~-~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~----------~~~~~~~~~~ 181 (415)
.|+...... + ..++ ..-.+. .++.++. .+|.|+-.|+..... ...+..- ......++++
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 566654432 1 1222 222333 3344443 789999888865432 2222110 1112344555
Q ss_pred cCCCceEEEEeCC-----ccCeEEEEEcC---CcceEEEecCccceEEEEeCCCCC-EEEEE-eCCCcEEEEEECCCCcE
Q 014977 182 HHSSTSVLACPGL-----QRGQVRIEHFG---LNMIKLINAHDSHIACFTLTLDGL-LLATA-STRGTLIRIFNTVDGTR 251 (415)
Q Consensus 182 ~~~~~~~l~~~g~-----~dg~v~i~~~~---~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~-s~dg~~I~vwd~~~~~~ 251 (415)
...+..+++.-.. .++--.||..+ .+.+..+.. ..++.+|..+.+.+ +|++. ..++. +.+||..+|+.
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~ 324 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKL 324 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--E
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcE
Confidence 4433333322111 23333444433 344444442 34677999998776 56544 45788 99999999999
Q ss_pred EEEEec
Q 014977 252 LQEVRR 257 (415)
Q Consensus 252 ~~~~~~ 257 (415)
+.++..
T Consensus 325 ~~~~~~ 330 (342)
T PF06433_consen 325 VRSIEQ 330 (342)
T ss_dssp EEEE--
T ss_pred Eeehhc
Confidence 998875
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.59 E-value=1.5 Score=38.71 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=69.4
Q ss_pred eEEEecCCCceEEEEeC--CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE-CCCCcEE-
Q 014977 177 LCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN-TVDGTRL- 252 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd-~~~~~~~- 252 (415)
....+.++++..+++.. .....+++..........+. ...+....|+++|...+....+.. .+++. ..+++..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGEP 102 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCccee
Confidence 33444445555565544 23344554544443333333 337788899999887777666666 66663 3344322
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeEEEEEceecccC
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRVVG 296 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i~vwd~~~~~~~ 296 (415)
..+........|..+.+||||..+|... .++.|.|=-+......
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 2233211222799999999999888766 3578888887766543
No 395
>PRK10115 protease 2; Provisional
Probab=95.58 E-value=3.2 Score=42.49 Aligned_cols=240 Identities=13% Similarity=0.072 Sum_probs=116.0
Q ss_pred CceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC-CCCCeEE
Q 014977 45 IELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ-YPPTKVI 117 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-~~~~~i~ 117 (415)
-.+..+.++|||++|+.+. +| .+++.|+.++..+ ...+.... ..+.|.+++..++-...+.. .....|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4577889999999999876 23 3677788765422 11221211 34677766543332222211 1336888
Q ss_pred EEECCCC--CEEEEEEc-cCcee-EEEEcCCeEEEE------eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCC
Q 014977 118 IWDDHQS--RCIGEFAF-RSDVR-SVKLSRDRIVVV------LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 118 vwd~~~~--~~~~~~~~-~~~i~-~l~~~~~~~~~~------~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
.+++.++ +....+.. ..... .+..+.++.+++ .++.+.+++. .+++....+..... ... .+....
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~- 279 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEY-SLDHYQ- 279 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEE-EEEeCC-
Confidence 9998888 33333442 22222 333444666554 3578888885 23332222222221 122 222212
Q ss_pred ceEEEEeCCccCeEEE--EEcC-CcceEEEecC-c-cceEEEEeCCCCCEEEEEeCCCc-EEEEEECCCCcEEEEEecCC
Q 014977 186 TSVLACPGLQRGQVRI--EHFG-LNMIKLINAH-D-SHIACFTLTLDGLLLATASTRGT-LIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i--~~~~-~~~~~~~~~~-~-~~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~~~~~~~~~~~~~~ 259 (415)
+.+++.+.......+| .+.. ......+..+ . ..+..+.+. .+.++++...++. .+.+++..+ ..+..+.-.
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~- 356 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIAFD- 356 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEecCC-
Confidence 2333333221222333 2222 1222344444 2 367777776 3345556666665 144455433 334444311
Q ss_pred CcccEEEEEeC--CCCC-EEEEEeC---CCeEEEEEceecc
Q 014977 260 DRAEIYSIALS--PNVQ-WLAVASD---KGTVHIFSLRVRV 294 (415)
Q Consensus 260 ~~~~v~~l~~s--pdg~-~l~s~s~---dg~i~vwd~~~~~ 294 (415)
....+..+.++ +++. ++++.+. -+.++.+|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 12223334444 4443 4443332 3678888887754
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.56 E-value=1.7 Score=39.22 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=82.7
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-CCEEEEE--Ec----cCceeEEEEcCCeEEEEeCCeEEEEE
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGEF--AF----RSDVRSVKLSRDRIVVVLEHKIYVYS 158 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~~~~--~~----~~~i~~l~~~~~~~~~~~d~~i~iwd 158 (415)
....+.++.|.....-++.+.. +.| +.... |+.=... .. .....++.|..+.-+++.+..+.+..
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~------g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAY------GTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETT------TEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEE
T ss_pred CCCceEEEEEecCCEEEEEecC------CEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEe
Confidence 3446777777765555555443 443 32222 2221111 11 23466788877766666333333333
Q ss_pred cCCceeeeEEecc-CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 159 FVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
...++.=..+... .-+.....+...+++..+++ + ..|.|+.-...++. ......-.+.+..+..+++|++++++..
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-G-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-E-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-c-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 3334322222211 11112222222223333333 3 35666653333332 2223444577888999999998888765
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
-.. ..-||--.. .-...... ....|..|.|.|++.+.+.+ ..|.|++=+
T Consensus 165 G~~-~~s~~~G~~-~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 165 GNF-YSSWDPGQT-TWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SSE-EEEE-TT-S-S-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred ccE-EEEecCCCc-cceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 444 667774221 11222221 34589999999998876644 788787766
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.52 E-value=1.7 Score=38.75 Aligned_cols=218 Identities=10% Similarity=0.081 Sum_probs=115.8
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccC-----CceeEEEeccC-----CCeeEEEEeeeCCeEE------------
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEP-----FKETFRRDLKS-----GGFRIVEMLFRCNILA------------ 101 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~------------ 101 (415)
.--+.|+|+|.+.+-++.. .+...+||.++ ....+...+.. .......+.|+....+
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3468899999887766666 88899999972 12222223221 1223445555533222
Q ss_pred EEecCCCCCCCCCeEEEEECCCCCE-----EEEEE--ccCc-eeEEEEcC----CeEEEE--eCCeEEEEEcCCceeeeE
Q 014977 102 LVGAGDNSQYPPTKVIIWDDHQSRC-----IGEFA--FRSD-VRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 102 l~s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~--~~~~-i~~l~~~~----~~~~~~--~d~~i~iwd~~~~~~~~~ 167 (415)
++.++++ |+|.-|...-+.. ...+. .... -..+++.. +..+++ ..++|.|||-. ...+..
T Consensus 103 Fif~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~ 176 (336)
T TIGR03118 103 FLFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPL 176 (336)
T ss_pred EEEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccC
Confidence 2333444 8999998432221 11222 1222 33455542 223333 57888888842 222211
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
-.....+.-...++| -+ +.. -.+.+++ |-.+ .++++.=+.+..-|. |.+||+
T Consensus 177 ~g~F~DP~iPagyAP--Fn--Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvFd~ 229 (336)
T TIGR03118 177 PGSFIDPALPAGYAP--FN--VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVFTL 229 (336)
T ss_pred CCCccCCCCCCCCCC--cc--eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEEcC
Confidence 000011101111222 11 111 1245555 4332 222222233445677 999996
Q ss_pred CCCcEEEEEecCCCcccEEEEEeCC------CCCEEEEEeCCCeEEEEEceecccC
Q 014977 247 VDGTRLQEVRRGVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.|..++++.....-...+.|+..| .|.+|+---.||+|..||..+++-.
T Consensus 230 -~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 230 -NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred -CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 788888886433445667888765 5677777667999999999988754
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=1.4 Score=45.60 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=68.2
Q ss_pred EEEEeCCCCEEEEEe-CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
.++-.-.+..+++|+ .|.+-..|+... +. +... .....++.+++|+.++..++.|-.+ |.|.+||+.+++.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~n-e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGP-LHQN-ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccch-hhcC-CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcc
Confidence 333334455788888 777777777642 21 1111 2456778999999999999988776 9999999999999
Q ss_pred EEEEE-ccCceeEE---EEcCCeE-EEEeCCeEEEEEc
Q 014977 127 IGEFA-FRSDVRSV---KLSRDRI-VVVLEHKIYVYSF 159 (415)
Q Consensus 127 ~~~~~-~~~~i~~l---~~~~~~~-~~~~d~~i~iwd~ 159 (415)
++.+. +..+..++ .+..++. .+..|..-.+|.+
T Consensus 165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred eeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 98887 54444443 3333443 3335544446765
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.15 E-value=2.7 Score=38.86 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=114.6
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc-eeEEE---eccCCCeeEEEEeeeCC----eE-EEEecCCCCCCCC--C
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK-ETFRR---DLKSGGFRIVEMLFRCN----IL-ALVGAGDNSQYPP--T 114 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~----~~-~l~s~~~d~~~~~--~ 114 (415)
.-++|+|.|||++|++-..|.|++++.+... ..+.. ...........++++|+ +. +++....+..... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 3578999999988887659999999833222 11111 12345667888999883 33 3433311000001 2
Q ss_pred eEEEEECCCC-CE------EE-EEEc----cCceeEEEEcCCeEEEE---e-------------CCeEEEEEcCCcee--
Q 014977 115 KVIIWDDHQS-RC------IG-EFAF----RSDVRSVKLSRDRIVVV---L-------------EHKIYVYSFVDLKL-- 164 (415)
Q Consensus 115 ~i~vwd~~~~-~~------~~-~~~~----~~~i~~l~~~~~~~~~~---~-------------d~~i~iwd~~~~~~-- 164 (415)
.|.-|....+ .. +. .+.. ...-..|.|.||+.+.+ . .++|.-.+. +++.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCCC
Confidence 3444443333 11 11 1111 34556799999997766 1 234444442 2221
Q ss_pred -----------eeEE-eccCCCcceEEEecCCC-ceEEEEeCCccCeEEE-EEcCC------------------------
Q 014977 165 -----------LHQI-ETLANLRGLCCLSHHSS-TSVLACPGLQRGQVRI-EHFGL------------------------ 206 (415)
Q Consensus 165 -----------~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~g~~dg~v~i-~~~~~------------------------ 206 (415)
...+ .+.. ....+++++. +.+.+.--+.++.-.| ....+
T Consensus 162 dnP~~~~~~~~~~i~A~GlR---N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR---NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S---EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEEEEeCCC---ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 1111 1111 3456677776 6555443233332223 11111
Q ss_pred -----cceEEEecCccceEEEEeCC-------CCCEEEEEeCCCcEEEEEECCCCcEEEEEec--CCCcccEEEEEeCCC
Q 014977 207 -----NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQEVRR--GVDRAEIYSIALSPN 272 (415)
Q Consensus 207 -----~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~~~~~v~~l~~spd 272 (415)
.++..+..| ..+..+.|.. .|.+++..-..+. |....+..+..+..... ......+..+++.||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 112223333 4555666653 4455655555556 77777765533322211 113347999999999
Q ss_pred CCEEEEEeCCCeEE
Q 014977 273 VQWLAVASDKGTVH 286 (415)
Q Consensus 273 g~~l~s~s~dg~i~ 286 (415)
|.+.++-..+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99888888888664
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.13 E-value=1.8 Score=36.89 Aligned_cols=143 Identities=10% Similarity=0.081 Sum_probs=85.2
Q ss_pred EEEecCCCceEEEEeCC--------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEE--C
Q 014977 178 CCLSHHSSTSVLACPGL--------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFN--T 246 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~--------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd--~ 246 (415)
..-..+|+|++.+-+-. ..|.++.|....+ +..+...-.--+.++|+.+.+.+... +.+-. |.-|| .
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~ 189 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDC 189 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEEEEeccCCC-ceeeehhccCCccccccccCcEEEEEccCceE-EeeeecCC
Confidence 33445677777532111 1233444433332 22223333344678898887765544 44555 77787 5
Q ss_pred CCCc-----EEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCC
Q 014977 247 VDGT-----RLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSF 319 (415)
Q Consensus 247 ~~~~-----~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (415)
.+|. .+..++... ..-..-.++...+|.+.++.-..++|...|..+|+..
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L----------------------- 246 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL----------------------- 246 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-----------------------
Confidence 5553 333333210 1112334566778888888888889999999998843
Q ss_pred cccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEe
Q 014977 320 DTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSM 378 (415)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~ 378 (415)
..+++|......|+|... ..++++++
T Consensus 247 ---------------------------------~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 247 ---------------------------------LEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ---------------------------------EEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 378999888889999775 66777766
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.85 E-value=4.9 Score=41.17 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=54.0
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----------CcE--E-EEEe------cCCCcccEEEEEeCCC---CC
Q 014977 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTR--L-QEVR------RGVDRAEIYSIALSPN---VQ 274 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~--~-~~~~------~~~~~~~v~~l~~spd---g~ 274 (415)
-.|..|.++|+|.+|+..|..| |.|-.+.. |+. . +.+. .......|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4678899999999999988876 44444421 211 1 1111 1113457899999996 57
Q ss_pred EEEEEeCCCeEEEEEceeccc
Q 014977 275 WLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 275 ~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+|++-+.|+++++||+.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 999999999999999976553
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.64 E-value=1.9 Score=42.95 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=66.5
Q ss_pred EEEeCCccCeEEEEEcCCcceEEEe--cCccceEEEEeC--CCCCEEEEEeCCCcEEEEEECC---------CCcEEEEE
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLT--LDGLLLATASTRGTLIRIFNTV---------DGTRLQEV 255 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~s--p~g~~l~s~s~dg~~I~vwd~~---------~~~~~~~~ 255 (415)
++...+....+.||+........-. ...+.|..+.|. |+|+.+.+.+.... |.+|--. +...++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEE
Confidence 3344555667888998876543322 347889999886 68998888888888 8888431 22344554
Q ss_pred ecCCCc-ccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 256 RRGVDR-AEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 256 ~~~~~~-~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.-..+. .+|.+..|.++|.+++.+ .+.+.|++-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 332233 589999999999766544 3458888743
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.61 E-value=4.2 Score=38.59 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=82.9
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCC-----EEEEEEccCceeEEEEcC-----CeEEEE--eCCeEEEEEcC--Cce-
Q 014977 99 ILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-----DRIVVV--LEHKIYVYSFV--DLK- 163 (415)
Q Consensus 99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~~~~~i~~l~~~~-----~~~~~~--~d~~i~iwd~~--~~~- 163 (415)
...++.|+.. |.++||+...+. .+.+.+...+|..+..-+ +...++ .-..+.||.+. .+.
T Consensus 37 ~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence 3456666666 999999975543 455555788888887542 333444 68888888872 111
Q ss_pred ------eeeEEeccCCCcceEEE---ecCC-CceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977 164 ------LLHQIETLANLRGLCCL---SHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT 233 (415)
Q Consensus 164 ------~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s 233 (415)
.+..+..|.-......+ .+.. .++-+++.=+.||.+.+++.+.-....+...---...+.+.+.-..+++
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 22222333222222222 1211 2133445567899999987776554433333222334677777778888
Q ss_pred EeCCCcEEEEEEC
Q 014977 234 ASTRGTLIRIFNT 246 (415)
Q Consensus 234 ~s~dg~~I~vwd~ 246 (415)
++.+.. +.-|..
T Consensus 192 ~sss~~-l~~Yky 203 (418)
T PF14727_consen 192 ASSSWT-LECYKY 203 (418)
T ss_pred ecCcee-EEEecH
Confidence 888877 777754
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=5.1 Score=40.16 Aligned_cols=212 Identities=14% Similarity=0.076 Sum_probs=108.1
Q ss_pred EEEEeCCCCEEEEEe-C----------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 49 SVSWNQDYGCFAAGT-S----------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d----------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
-++..|-|.-+|+.- + -.|+||+... ..+...+ -.+..++.|-|+.+..+++..-+ |.+.
T Consensus 37 ~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG--~lL~~~~-w~~~~lI~mgWs~~eeLI~v~k~------g~v~ 107 (829)
T KOG2280|consen 37 YFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG--QLLGRIL-WKHGELIGMGWSDDEELICVQKD------GTVH 107 (829)
T ss_pred EEEecccCCceEEEecccccccccccceeEEEEeccc--cchHHHH-hcCCCeeeecccCCceEEEEecc------ceEE
Confidence 344456666666554 3 1266666553 2222222 22337889999998877766544 9999
Q ss_pred EEECCCCCEEEE--EE---ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCC---ce
Q 014977 118 IWDDHQSRCIGE--FA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSS---TS 187 (415)
Q Consensus 118 vwd~~~~~~~~~--~~---~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 187 (415)
||++.. ..+.. .. ....|..+.+..+|..+. .+|.+.+-+-.....+..+.. +.+.....+|...++ ..
T Consensus 108 Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~ 186 (829)
T KOG2280|consen 108 VYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQST 186 (829)
T ss_pred Eeecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcce
Confidence 999643 33322 11 344566667767777776 566665544221112222221 111112223332222 11
Q ss_pred EEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 188 VLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 188 ~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
.++-..-..+.... -.........+......+..+..||+.++|+--...|. |.+-+....+.+..+....+. +...
T Consensus 187 ~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~q 264 (829)
T KOG2280|consen 187 ILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQ 264 (829)
T ss_pred eEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHh
Confidence 11111100000000 00011111222222456778899999999999999999 999888777777776643232 2235
Q ss_pred EEeCCC
Q 014977 267 IALSPN 272 (415)
Q Consensus 267 l~~spd 272 (415)
++|..+
T Consensus 265 m~Wcgn 270 (829)
T KOG2280|consen 265 MAWCGN 270 (829)
T ss_pred ceeecC
Confidence 555443
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.20 E-value=8 Score=40.07 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=120.0
Q ss_pred CCCCceEEEEEeCCC------CEEEEEe-CCcEEE-EEccCCceeEEEecc--CCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 42 VDEIELISVSWNQDY------GCFAAGT-SCGFRI-YNCEPFKETFRRDLK--SGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g------~~la~g~-d~~v~i-w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
.-...|.|+.++|-| +++++|. +..+.+ .-+..........+. .-+..+.-..+-.+..+|..+..|
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd--- 604 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD--- 604 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCC---
Confidence 345689999999743 2788888 555444 333333322222221 122334445555655566555555
Q ss_pred CCCeEEEEE--CCCCCEEEEEE---ccCceeEEEEcCC--eEEEE-eCCeEEEEEcCCceeeeE-EeccCCCcceEEEec
Q 014977 112 PPTKVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSH 182 (415)
Q Consensus 112 ~~~~i~vwd--~~~~~~~~~~~---~~~~i~~l~~~~~--~~~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 182 (415)
|.+.-+- ..+|+.-..-+ ...++.--.|+.. ...++ .|.-..+|.-+ ++.+.. +.... -..++.+..
T Consensus 605 --G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~ke-v~~~c~f~s 680 (1096)
T KOG1897|consen 605 --GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKE-VNHMCPFNS 680 (1096)
T ss_pred --ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHH-hhhhccccc
Confidence 8776554 44444322221 2334433344332 22223 56666666532 333221 11111 012233333
Q ss_pred CCCceEEEEeCCccCeEEE---EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-------------cEEEEEEC
Q 014977 183 HSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-------------TLIRIFNT 246 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-------------~~I~vwd~ 246 (415)
+.-...++.+ ..+.+.+ +....-.++++.- ......+++.+....+++.+... ..++++|-
T Consensus 681 ~a~~d~l~~~--~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~ 757 (1096)
T KOG1897|consen 681 DAYPDSLASA--NGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ 757 (1096)
T ss_pred ccCCceEEEe--cCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence 2222234432 3445555 4444444555433 33446677777555554443211 13778887
Q ss_pred CCCcEEEEEecCCC--cccEEEEEeCCC-CCEEEEEeC----------CCeEEEEEceecc
Q 014977 247 VDGTRLQEVRRGVD--RAEIYSIALSPN-VQWLAVASD----------KGTVHIFSLRVRV 294 (415)
Q Consensus 247 ~~~~~~~~~~~~~~--~~~v~~l~~spd-g~~l~s~s~----------dg~i~vwd~~~~~ 294 (415)
++.+.+...+-... .-.|.++.|..| +.++++|+. .|.|.||.+...+
T Consensus 758 nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 758 NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 77766544332111 124566668877 778887763 4788888888743
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.08 E-value=6.3 Score=38.45 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCCCceEEEEEeCCC-----CEEEEEeCCcEEEEEccCC-----ceeEEEecc-CCC--eeEEEEeeeCCeEEEEecCC
Q 014977 41 DVDEIELISVSWNQDY-----GCFAAGTSCGFRIYNCEPF-----KETFRRDLK-SGG--FRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g-----~~la~g~d~~v~iw~~~~~-----~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~s~~~ 107 (415)
-|.-+.|..++|.|-+ .+||+-....|.||.+... +.......+ ... .-...+.|+|...+|+.-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 3455679999999853 4777777999999998631 222211110 111 11234568887654443322
Q ss_pred CCCCCCCeE-EEEECC--CCCEEEEEEccCceeEEEEcCCeEEEE--eCC--eEEEEEc
Q 014977 108 NSQYPPTKV-IIWDDH--QSRCIGEFAFRSDVRSVKLSRDRIVVV--LEH--KIYVYSF 159 (415)
Q Consensus 108 d~~~~~~~i-~vwd~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~--~i~iwd~ 159 (415)
..+ .++++. +.+....++..+.|.|.+|.+||..++ .+. .-++||-
T Consensus 133 ------~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 ------RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ------CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 223 334433 334455566789999999999998776 333 4567874
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=93.97 E-value=5.1 Score=37.03 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=106.1
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc---CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
...+++|.|..+..-+++|.++. ||.....+........ .....+.++.+.++..++ .+.. +.|..-.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~-~G~~------g~i~~S~ 115 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRT--LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWI-VGQP------SLLLHTT 115 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCE--EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEE-eCCC------ceEEEEC
Confidence 55799999997777788887654 5555444443333211 122335566666544333 3322 3332221
Q ss_pred CCCCCEEEEEE----ccCceeE-EEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 121 DHQSRCIGEFA----FRSDVRS-VKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 121 ~~~~~~~~~~~----~~~~i~~-l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
+.|+.-..+. ....... ..+.++..+++ ..+.|..=+ ..++.=..+.... ...+..+...+++.++++ |
T Consensus 116 -DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~-g- 190 (334)
T PRK13684 116 -DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDA-AGVVRNLRRSPDGKYVAV-S- 190 (334)
T ss_pred -CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCC-cceEEEEEECCCCeEEEE-e-
Confidence 2222222221 1111122 22233222222 233332211 1122111111111 124455666667766654 4
Q ss_pred ccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeC
Q 014977 195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS 270 (415)
Q Consensus 195 ~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s 270 (415)
..|.+.. ++..++.-... ......++++.+.++++.++++ ..|. +++=....|+.-.....+ .....+.++.+.
T Consensus 191 ~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 191 SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLESWSKPIIPEITNGYGYLDLAYR 268 (334)
T ss_pred CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCccccccCCccccccceeeEEEc
Confidence 4666665 22222222222 2335678899999999877665 4565 543233444432222211 012357889999
Q ss_pred CCCCEEEEEeCCCeEE
Q 014977 271 PNVQWLAVASDKGTVH 286 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~ 286 (415)
+++..++ ++.+|.|.
T Consensus 269 ~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 269 TPGEIWA-GGGNGTLL 283 (334)
T ss_pred CCCCEEE-EcCCCeEE
Confidence 9877554 55677554
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=1.4 Score=43.80 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=69.7
Q ss_pred eCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEee--eCCeEEEEecCCCCCCCCCeEEEEECC-------
Q 014977 53 NQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF--RCNILALVGAGDNSQYPPTKVIIWDDH------- 122 (415)
Q Consensus 53 sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~~~~~~i~vwd~~------- 122 (415)
+.-++..++.. ...+.|||.......+...+ .....|.++.| .+++..+.+-|.. +.|.++.-.
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQLRYDYTNK 111 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEccchhhhcC
Confidence 33344444444 56799999998777676666 44555555554 5678777777766 888888521
Q ss_pred --CCCEEEEEE---c-cCceeEEEEcCCeEEEE-eCCeEEEEEc
Q 014977 123 --QSRCIGEFA---F-RSDVRSVKLSRDRIVVV-LEHKIYVYSF 159 (415)
Q Consensus 123 --~~~~~~~~~---~-~~~i~~l~~~~~~~~~~-~d~~i~iwd~ 159 (415)
+-..++++. + ..+|.+..|.++|.+++ .++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 123455544 3 47899999999999998 8999999984
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.84 E-value=0.066 Score=45.07 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=48.9
Q ss_pred eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE-ecCc-cceEEEEeCC
Q 014977 150 LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI-NAHD-SHIACFTLTL 226 (415)
Q Consensus 150 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~-~~~~-~~i~~l~~sp 226 (415)
.+|.|++|...-. .....+..... .+.+.-+..+...+.+++..+|.|+.+........-. -.|. .++.....+.
T Consensus 78 ~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~ 155 (238)
T KOG2444|consen 78 SDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG 155 (238)
T ss_pred ccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec
Confidence 7999999987521 11111111122 2334444444444666788999999977665443333 3343 3333333444
Q ss_pred CCCEEEEE--eCCCcEEEEEEC
Q 014977 227 DGLLLATA--STRGTLIRIFNT 246 (415)
Q Consensus 227 ~g~~l~s~--s~dg~~I~vwd~ 246 (415)
.+++|+++ |.|.. ++.|++
T Consensus 156 sd~~i~~a~~S~d~~-~k~W~v 176 (238)
T KOG2444|consen 156 SDEFLKIADTSHDRV-LKKWNV 176 (238)
T ss_pred CCceEEeeccccchh-hhhcch
Confidence 44444444 44554 555554
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.82 E-value=3.4 Score=41.69 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCceEEEEeCCccCeEEEEEcCC---------------------cceEEEecCccceEEEEeC--CCCCEEEEEeCCCcE
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGL---------------------NMIKLINAHDSHIACFTLT--LDGLLLATASTRGTL 240 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~---------------------~~~~~~~~~~~~i~~l~~s--p~g~~l~s~s~dg~~ 240 (415)
.....|++ +.+||.|.+|.... ++...+ .-...++.++++ ...++||+++....
T Consensus 112 g~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~- 188 (717)
T PF08728_consen 112 GGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQE- 188 (717)
T ss_pred CCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCce-
Confidence 33445544 66899999985421 011111 124477889998 77788888888777
Q ss_pred EEEEECCCC-cEEEEEecCCCcccEEEEEeCCCC-----C-EEEEEeCCCeEEEEEce
Q 014977 241 IRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV-----Q-WLAVASDKGTVHIFSLR 291 (415)
Q Consensus 241 I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg-----~-~l~s~s~dg~i~vwd~~ 291 (415)
|.||-.... +.........+...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888765432 111111111244578889887643 2 78889999999999983
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=0.86 Score=47.40 Aligned_cols=143 Identities=9% Similarity=0.031 Sum_probs=85.1
Q ss_pred cCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeee-----EE----eccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 133 RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLH-----QI----ETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
.-.|..+...+|+...+ .+..|+.||+++..... .+ .....++...++.|+|.-....+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566667777754443 34478999986532211 11 112233344555565543333334556777
Q ss_pred EEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC--cccEEEEEeCCCCC
Q 014977 199 VRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIALSPNVQ 274 (415)
Q Consensus 199 v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~spdg~ 274 (415)
|++...... .+..+ .-....++++|+|.|+.++.|-..|+ +.-|.. +++....+..... ...|.+|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 777433322 12221 23456789999999999999999999 888853 5665555543211 24799999987777
Q ss_pred EEEE
Q 014977 275 WLAV 278 (415)
Q Consensus 275 ~l~s 278 (415)
+|++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 7664
No 412
>PRK10115 protease 2; Provisional
Probab=93.71 E-value=9.4 Score=39.19 Aligned_cols=200 Identities=8% Similarity=-0.019 Sum_probs=97.6
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---e-C-----CeEEEEE
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L-E-----HKIYVYS 158 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~-d-----~~i~iwd 158 (415)
..+..+.++|++..++-+.+...-....|++.|+.+|..+...-.... ..++|.+|+..++ . + ..|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 445667889998777655433111224789999988864322211111 4589998876555 2 1 3688889
Q ss_pred cCCc--eeeeEEeccCCCcceEEEec-CCCceEEEEeCCccCeEEEEEc---CCcceEEEecCc-cceEEEEeCCCCCEE
Q 014977 159 FVDL--KLLHQIETLANLRGLCCLSH-HSSTSVLACPGLQRGQVRIEHF---GLNMIKLINAHD-SHIACFTLTLDGLLL 231 (415)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~dg~v~i~~~---~~~~~~~~~~~~-~~i~~l~~sp~g~~l 231 (415)
+.++ +....+........+..... +....++.+....++.+.+++. .... ..+..+. .....+. +..+.++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEE
Confidence 8877 33334443333233222332 2222233333334456666552 2222 2222222 2222222 3333333
Q ss_pred EEEeCCC-c-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 232 ATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 232 ~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+....++ . .|...++........+........|..+.+. .+.++++...+|.-+++-+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333222 2 1333444421122233332122368888887 33556666777765555554
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.68 E-value=0.4 Score=41.25 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=50.1
Q ss_pred eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (415)
Q Consensus 269 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (415)
+..++.+|++.+.+|.+++||+.+++.... +.+....+. +.. ..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------------------------------~~Si~pll~---~~~-~~ 61 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------------------------------PVSIAPLLN---SSP-VS 61 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------------------------------CccHHHHhc---ccc-cc
Confidence 445788999999999999999999886421 001011110 000 00
Q ss_pred ccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 349 EWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
+ . .+......+..+.++..++.-++|..|.|+.+.
T Consensus 62 ~----~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 62 D----K--SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred c----C--CCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 0 0 222344556777778888888899999998876
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.61 E-value=0.28 Score=29.56 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.1
Q ss_pred cEEEEEeCCCC---CEEEEEeCCCeEEEEEceec
Q 014977 263 EIYSIALSPNV---QWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 263 ~v~~l~~spdg---~~l~s~s~dg~i~vwd~~~~ 293 (415)
.|.++.|+|+. .+|+.+-..|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 58899999854 48888888899999999964
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.60 E-value=10 Score=39.25 Aligned_cols=225 Identities=10% Similarity=0.007 Sum_probs=111.8
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCe------eEEEEeeeC-----------------CeEEEEecCCCCCCC
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF------RIVEMLFRC-----------------NILALVGAGDNSQYP 112 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------------~~~~l~s~~~d~~~~ 112 (415)
..|.+++ ++.|.-.|..+++++.+...+.... .+..+.+.. +..++ .+..|
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~-~~T~D---- 269 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII-LPTSD---- 269 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE-EecCC----
Confidence 3555556 7888888888877777655422111 011122211 12333 33344
Q ss_pred CCeEEEEECCCCCEEEEEEccCcee-------------EEEEcC---CeEEEE--e----------CCeEEEEEcCCcee
Q 014977 113 PTKVIIWDDHQSRCIGEFAFRSDVR-------------SVKLSR---DRIVVV--L----------EHKIYVYSFVDLKL 164 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~~~~i~-------------~l~~~~---~~~~~~--~----------d~~i~iwd~~~~~~ 164 (415)
+.|.-.|.++|+.+..+...+.|. .+.-.| ++.+++ . +|.|+-+|.++|+.
T Consensus 270 -g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 270 -ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred -CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 899999999999998775433321 011111 344444 1 57899999999999
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
+..+........ ... ..+.... .|+.+. ...-+|.....+..-.+...+ .+....+.....-..+. |.-
T Consensus 349 ~W~~~~g~p~~~--~~~--~~g~~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvA 418 (764)
T TIGR03074 349 VWAWDPGNPDPT--APP--APGETYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVA 418 (764)
T ss_pred eeEEecCCCCcc--cCC--CCCCEec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEE
Confidence 988764211100 000 1121111 121111 011122222222111111111 00000000000112345 778
Q ss_pred EECCCCcEEEEEecCCCcc-------cEEEEEeCC-CCC---EEEEEeCCCeEEEEEceecccCC
Q 014977 244 FNTVDGTRLQEVRRGVDRA-------EIYSIALSP-NVQ---WLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~-------~v~~l~~sp-dg~---~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
.|.++|+....++...|.- ...-+.+.. +|+ .++.++.+|.++++|-++++..-
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 8999999888777633321 111122222 563 78899999999999999987643
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.39 E-value=2.3 Score=40.52 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCeEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC------ceEEEEeCCccCeEEEEEc-CCcceEE
Q 014977 143 RDRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------TSVLACPGLQRGQVRIEHF-GLNMIKL 211 (415)
Q Consensus 143 ~~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~g~~dg~v~i~~~-~~~~~~~ 211 (415)
.+..++.. ...++-.|++-|+.+..+..+.. .++.+.|..+ ...|+- -+..+..+|+.+ ++..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--vvVqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--VVVQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCc--ceeecCCchhHHhcCccceEEe-ecccceEEecccccCCceee
Confidence 34445552 34677888889999988887776 3455544321 122322 234555666433 3333322
Q ss_pred Eec----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 212 INA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 212 ~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
... ......+..-..+ -++|+++..|- |++||--.-.....+.+ ....|..+..+.+|++|++.+ ...+.+
T Consensus 554 ~esKdY~tKn~Fss~~tTes-GyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTES-GYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred eeehhccccccccccccccC-ceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceEEE
Confidence 221 1122223332333 48999999999 99999432222233444 556799999999999987666 456888
Q ss_pred EEceecc
Q 014977 288 FSLRVRV 294 (415)
Q Consensus 288 wd~~~~~ 294 (415)
-|+.-..
T Consensus 629 ~d~~ik~ 635 (776)
T COG5167 629 TDVPIKY 635 (776)
T ss_pred Eeccccc
Confidence 8876543
No 417
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.17 E-value=7.8 Score=36.62 Aligned_cols=191 Identities=10% Similarity=0.051 Sum_probs=85.7
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCC----CEEEEEEc----c----CceeEEEEcCCeEEEE---------eCCeEEEEE
Q 014977 100 LALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFAF----R----SDVRSVKLSRDRIVVV---------LEHKIYVYS 158 (415)
Q Consensus 100 ~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~~----~----~~i~~l~~~~~~~~~~---------~d~~i~iwd 158 (415)
.+++-+-.. +.|.|.|+.+. +..+.++. . .....+..-|+|.+++ .-|.+.++|
T Consensus 89 ~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 89 YLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 444444444 89999998743 44455541 1 2334455567886655 135688888
Q ss_pred cCCceeeeEEeccCC-CcceEEEecCCCceEEEEeC-------------------CccCeEEEEEcCCcce-EEEecCc-
Q 014977 159 FVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPG-------------------LQRGQVRIEHFGLNMI-KLINAHD- 216 (415)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-------------------~~dg~v~i~~~~~~~~-~~~~~~~- 216 (415)
-++.+.....+.... ......+-+.+....++++. ....++.+|++..+.. +.+.-..
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 888877777654322 22334555556656666532 1346788899887554 4444322
Q ss_pred -cceEEEEeC--CCCCEEEEEe-CCCcEEEEE-ECCCCc----EEEEEecCC--------C-------cccEEEEEeCCC
Q 014977 217 -SHIACFTLT--LDGLLLATAS-TRGTLIRIF-NTVDGT----RLQEVRRGV--------D-------RAEIYSIALSPN 272 (415)
Q Consensus 217 -~~i~~l~~s--p~g~~l~s~s-~dg~~I~vw-d~~~~~----~~~~~~~~~--------~-------~~~v~~l~~spd 272 (415)
.....|.|. |+..+=++++ -..+ |..| ....++ .+..+.... - ..-|++|.+|.|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 234456665 4444433333 3444 5444 323442 222232110 0 235799999999
Q ss_pred CCEEEEEe-CCCeEEEEEceecccC
Q 014977 273 VQWLAVAS-DKGTVHIFSLRVRVVG 296 (415)
Q Consensus 273 g~~l~s~s-~dg~i~vwd~~~~~~~ 296 (415)
.++|.... ..|.|+.||+......
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCEEEEEcccCCcEEEEecCCCCCC
Confidence 99998665 5899999999987654
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.17 E-value=0.52 Score=28.38 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.2
Q ss_pred cceEEEEeCCCC---CEEEEEeCCCcEEEEEECCC
Q 014977 217 SHIACFTLTLDG---LLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 217 ~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~ 248 (415)
+.+.++.|+|+. .+|+.+-..+. |.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 367899999854 48888887888 99999985
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.99 E-value=6.1 Score=34.89 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=90.4
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE-CC
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-DH 122 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd-~~ 122 (415)
.+.+.+++++++.+|.-. ++.-.||-.......... + ....+....|++++.+.+....+ ...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCC-----CceEEEEecC
Confidence 688999999999887655 555556555443332221 1 22366777788887666554443 5555553 33
Q ss_pred CCCEE-EEEE---ccCceeEEEEcCCeEEEE--e----CCeEEEEEcC---Cc--eee-eEEecc-CCCcceEEEecCCC
Q 014977 123 QSRCI-GEFA---FRSDVRSVKLSRDRIVVV--L----EHKIYVYSFV---DL--KLL-HQIETL-ANLRGLCCLSHHSS 185 (415)
Q Consensus 123 ~~~~~-~~~~---~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~---~~--~~~-~~~~~~-~~~~~~~~~~~~~~ 185 (415)
+++.. ..+. ....|..+.++|||..++ . ++.|++--+. .+ ..+ ..+... .....+..+.|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 44332 2222 122899999999998887 3 6788877652 23 111 111111 11225667888888
Q ss_pred ceEEEEeCCccCeEEE-EEcCCcceEE
Q 014977 186 TSVLACPGLQRGQVRI-EHFGLNMIKL 211 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i-~~~~~~~~~~ 211 (415)
..+++.....++.+.. ....+.....
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~~~~ 203 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGPSTP 203 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCcccc
Confidence 8777765555554443 3334433333
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.95 E-value=2.6 Score=40.93 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=66.8
Q ss_pred CceeEEEEcCCe-----EEEE--eCCeEEEEEcC-----CceeeeEEec---cCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 134 SDVRSVKLSRDR-----IVVV--LEHKIYVYSFV-----DLKLLHQIET---LANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 134 ~~i~~l~~~~~~-----~~~~--~d~~i~iwd~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
..|.++.|.|-+ .+++ ....|.||.+. ..+.+..-.. ..-++-.-...|+|...+|++-...|-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 457888998752 3444 68899999984 2333322111 1122223344566666677665545544
Q ss_pred EEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 199 VRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 199 v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
|.- -..+...++.--...+.|.|.+|.+||+.|+++-...-.-+|||-
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 443 223334444433567889999999999987765544333689984
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.62 E-value=7.6 Score=36.44 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=72.4
Q ss_pred CceeEEEEcCCeEEEEeC---------------CeEEEEEcCC--cee--eeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 134 SDVRSVKLSRDRIVVVLE---------------HKIYVYSFVD--LKL--LHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 134 ~~i~~l~~~~~~~~~~~d---------------~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
.....|+|.++|++.+.+ +.|.+++-.+ ++. ...+..... ....+.+.+++ ++++ .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~--~p~Gi~~~~~G-lyV~--~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS--MVTGLAVAVGG-VYVA--T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC--CccceeEecCC-EEEe--C
Confidence 445677888888776621 2677776432 332 233332222 23445555666 4433 2
Q ss_pred ccCeEEEEEcCC------cceEEEe---c----CccceEEEEeCCCCCEEEEEeCC-------------------CcEEE
Q 014977 195 QRGQVRIEHFGL------NMIKLIN---A----HDSHIACFTLTLDGLLLATASTR-------------------GTLIR 242 (415)
Q Consensus 195 ~dg~v~i~~~~~------~~~~~~~---~----~~~~i~~l~~sp~g~~l~s~s~d-------------------g~~I~ 242 (415)
.....++.+..+ +....+. . +......++|.|||.+.++-+.. |. |.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence 333333433322 1111112 1 13446789999999876654421 34 55
Q ss_pred EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
-+|...++ +..+..+ + .....++|+++|+++++-..+
T Consensus 168 r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEccCC
Confidence 55554433 3333332 2 245789999999987764433
No 422
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=92.61 E-value=5.5 Score=37.17 Aligned_cols=167 Identities=15% Similarity=0.187 Sum_probs=92.6
Q ss_pred CeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEeccCCCcceEEEecCC
Q 014977 114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 184 (415)
+.|.+.| ++...+..++ ....|.++.|..|-.+++ ...-+.+.|+.+.+ .+..++.+. ...-+++-+
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG---fS~YLHpig 481 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG---FSEYLHPIG 481 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC---chhhccccC
Confidence 4566666 5566666666 467899999999988888 45678888986554 444444332 344567777
Q ss_pred CceEEEEeCCccCeEEE--EEcCC----cceEEEe--cCccc----eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 185 STSVLACPGLQRGQVRI--EHFGL----NMIKLIN--AHDSH----IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i--~~~~~----~~~~~~~--~~~~~----i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
.+.+|-. |..+|.++| ++... +.+..+. .--++ -.+..|.|...++..-...+. . |+-++.|..+
T Consensus 482 en~~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g-y-if~iedg~kl 558 (603)
T COG4880 482 ENRLLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG-Y-IFFIEDGSKL 558 (603)
T ss_pred CCcEEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc-E-EEEEecCcee
Confidence 8877765 778899988 44332 1111111 10011 123445555554444333343 2 5666677444
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
..-.. +...+...-|..|- |...+.. .+.++|-.+
T Consensus 559 ~k~~e--~k~na~RA~fi~dy--lY~vg~~-ev~~ldens 593 (603)
T COG4880 559 RKRAE--RKLNADRAFFIKDY--LYLVGGN-EVWKLDENS 593 (603)
T ss_pred eehhh--hcccceeeEEecce--EEEeccc-eeEEeccch
Confidence 33222 55555555565554 4433322 255555433
No 423
>PHA02713 hypothetical protein; Provisional
Probab=92.13 E-value=14 Score=36.95 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--eEEEEEceecc
Q 014977 227 DGLLLATASTRG-----TLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVRV 294 (415)
Q Consensus 227 ~g~~l~s~s~dg-----~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~~ 294 (415)
+|++.+.|+.++ ..+..||..+ .+- +..+.. .......+.+ +|+..++|+.++ .+..||..+++
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 566667776542 1167899876 432 223322 1122222233 778888999888 67777777765
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.05 E-value=1 Score=38.75 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=50.1
Q ss_pred eCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE-------ec-----CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-------RR-----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-------~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+..++.+|++.+.+|. +++||+.+++.+..- .. ......|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999 999999988754322 10 01345788999999998887766 4678999865
Q ss_pred ec
Q 014977 292 VR 293 (415)
Q Consensus 292 ~~ 293 (415)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.39 E-value=6.9 Score=37.48 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=85.7
Q ss_pred EeeeCCeEE-EEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe---------EEEE-eCCeEEEEEcCC
Q 014977 93 MLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVD 161 (415)
Q Consensus 93 ~~~~~~~~~-l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~---------~~~~-~d~~i~iwd~~~ 161 (415)
|.+..+..+ +..++.. ..+.-.|++.|+.+.+......+ -+.|.|+. .++. .+..|.-.|.+-
T Consensus 473 mlh~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 473 MLHDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred eeecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence 344444433 4444443 77888899999999888854444 56677643 2333 566666666532
Q ss_pred -ceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 162 -LKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 162 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
|..+...... .......+...... .++|+ ++..|.|+++++-+.. ...+.+-...|..|..+.+|+++++.+..
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tTes-GyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTTES-GYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cCCceeeeeehhccccccccccccccC-ceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 2222221111 00001122222223 36665 6789999997765543 44466778889999999999987766654
Q ss_pred CcEEEEEECC
Q 014977 238 GTLIRIFNTV 247 (415)
Q Consensus 238 g~~I~vwd~~ 247 (415)
. +.+-|++
T Consensus 625 -y-llL~d~~ 632 (776)
T COG5167 625 -Y-LLLTDVP 632 (776)
T ss_pred -e-EEEEecc
Confidence 3 6777764
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.12 E-value=18 Score=36.25 Aligned_cols=191 Identities=13% Similarity=0.045 Sum_probs=93.1
Q ss_pred eEEEEecCCCC-CCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eC------CeEEEEEcCCceeeeE
Q 014977 99 ILALVGAGDNS-QYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 99 ~~~l~s~~~d~-~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d------~~i~iwd~~~~~~~~~ 167 (415)
+.+++.||..+ ...-..+..+|..+++...... ....-.++++..+..+++ .+ ..+..||..+.+-...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 44555555542 2233678899988875544333 344456667777766666 34 4678888876653321
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEE-----EEcCCcceEEEecCccceEEE-EeCCCCCEEEEEeCCCc--
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGLNMIKLINAHDSHIACF-TLTLDGLLLATASTRGT-- 239 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-----~~~~~~~~~~~~~~~~~i~~l-~~sp~g~~l~s~s~dg~-- 239 (415)
-.... ......++.- +|.+.| .|+.||.-.+ |+.....-............. ...-+|++.++|+.++.
T Consensus 365 a~M~~-~R~~~~v~~l-~g~iYa-vGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 365 APMNT-KRSDFGVAVL-DGKLYA-VGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred CCccC-ccccceeEEE-CCEEEE-EeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 11111 1112222222 233444 4667765443 443332211111111111111 11237788888886653
Q ss_pred ---EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe-----EEEEEceecc
Q 014977 240 ---LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT-----VHIFSLRVRV 294 (415)
Q Consensus 240 ---~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~-----i~vwd~~~~~ 294 (415)
.+..||..+++-...-......... .++. -++.+.+.|+.|+. |..||..+.+
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 2678887776533221110011111 2222 35677788887762 5555555543
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.70 E-value=8.5 Score=39.46 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.|..|.++|+|++|+..|..| |.|-.+.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 688999999999999999877 6776664
No 428
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.49 E-value=18 Score=35.29 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=65.8
Q ss_pred CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccc---eEEEEeCCCC
Q 014977 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH---IACFTLTLDG 228 (415)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~---i~~l~~sp~g 228 (415)
....++|. .|.....+......... +...++|.+++..+ ..+...+..++.+......... =..+..-|+|
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred ceEEEECC-CccEEEEEccCccccce--eeEcCCCCEEEecC---CceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence 45666663 45554444333221111 44556777776533 6677777778766665433322 2456778999
Q ss_pred CEEEEEeC-------------CCcEEEEEECCCCcEEEEEecCCCc-------------------------ccEEEEEeC
Q 014977 229 LLLATAST-------------RGTLIRIFNTVDGTRLQEVRRGVDR-------------------------AEIYSIALS 270 (415)
Q Consensus 229 ~~l~s~s~-------------dg~~I~vwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~s 270 (415)
++|+.+.. ... |..+| .+|+.+..+....|- -.++++.+.
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 98887772 112 55666 677766664321110 147889998
Q ss_pred C-CCCEEEEEeCCCeEEEEEceecc
Q 014977 271 P-NVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 271 p-dg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+ ++.+|+++-.-..|...|.++++
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred CCCCeEEEEcCcceEEEEEECCCCc
Confidence 8 55566555555577777765654
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.25 E-value=2.1 Score=25.31 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecC
Q 014977 226 LDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 226 p~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
|++++|+++.. ++. |.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence 57777776664 566 999999999888888763
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.16 E-value=0.58 Score=47.37 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=94.3
Q ss_pred CeEEEEECCCCCEEEE-EE-ccCceeEEEEcCC-eEEEE-eCCeEEEEEcC--CceeeeEEe-----ccCCCcceEEEec
Q 014977 114 TKVIIWDDHQSRCIGE-FA-FRSDVRSVKLSRD-RIVVV-LEHKIYVYSFV--DLKLLHQIE-----TLANLRGLCCLSH 182 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~-~~-~~~~i~~l~~~~~-~~~~~-~d~~i~iwd~~--~~~~~~~~~-----~~~~~~~~~~~~~ 182 (415)
+.+++-+..+...-.+ ++ +.+.+-.+.|... ...+. .-|.+.|||+. .|+....+. ....+...+.+.+
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP 190 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecc
Confidence 5666666443321111 12 5677888887532 12222 45677788873 344333322 1222223333333
Q ss_pred C-CCceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEE-----------EeCCCCCEEEEEeCCCcEEEEEECC-
Q 014977 183 H-SSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACF-----------TLTLDGLLLATASTRGTLIRIFNTV- 247 (415)
Q Consensus 183 ~-~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l-----------~~sp~g~~l~s~s~dg~~I~vwd~~- 247 (415)
- .+..++ +.+..+++|++ |+.... ..+.+|...+..+ .++|||..++.+..||. +++|.+.
T Consensus 191 ~~~~~~~i-c~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi 266 (1283)
T KOG1916|consen 191 IAVNKVYI-CYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYI 266 (1283)
T ss_pred ccccccee-eeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeee
Confidence 2 222344 44778889998 544333 3444566554443 36899999999999998 8888653
Q ss_pred CC----cEEEEEecCCCc-ccEEEEEeCCCC---------CEEEEEeC-CCeEEEEEceecccC
Q 014977 248 DG----TRLQEVRRGVDR-AEIYSIALSPNV---------QWLAVASD-KGTVHIFSLRVRVVG 296 (415)
Q Consensus 248 ~~----~~~~~~~~~~~~-~~v~~l~~spdg---------~~l~s~s~-dg~i~vwd~~~~~~~ 296 (415)
+| .++...+. |. .+-.|.-++... .+++++++ ...+++|.-..-+|.
T Consensus 267 ~g~~~~rclhewkp--hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKP--HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eccccHhhhhccCC--CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 22 34444554 33 222222233221 23445544 346899987776654
No 431
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=8.6 Score=36.99 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=51.6
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEE-----E----CCCCcEEEEEe---------cCCCcccEEEEEeCCCC---CEE
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIF-----N----TVDGTRLQEVR---------RGVDRAEIYSIALSPNV---QWL 276 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vw-----d----~~~~~~~~~~~---------~~~~~~~v~~l~~spdg---~~l 276 (415)
.|..+..++.|..++-++.+|. +.++ - +++|+.....+ .....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi-~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL-MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCee-EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4667888999999998888885 3332 1 23443322111 11011256778999976 578
Q ss_pred EEEeCCCeEEEEEceecccC
Q 014977 277 AVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~~~~~~ 296 (415)
..-+.|+.|++|++.+....
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88889999999999887654
No 432
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.80 E-value=5.8 Score=34.59 Aligned_cols=139 Identities=10% Similarity=0.015 Sum_probs=74.8
Q ss_pred eEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE------eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEec
Q 014977 115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~ 182 (415)
.-.+||+.+++... +. ...-..+-.+.+||+++. ....+++++..+ ......-..-....+.-....
T Consensus 47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 34688988876532 22 233333445778998888 234577887543 111100000111112223334
Q ss_pred CCCceEEEEeCCccCeEEEEEcCC--cceEEE--ec-----C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGL--NMIKLI--NA-----H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~--~~-----~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
-++|+.|+..|....+..+|.... .....+ .. . ...--.+...|+|++++.+..+.. |||..+.+.+
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~---i~d~~~n~v~ 202 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI---IYDYKTNTVV 202 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE---EEeCCCCeEE
Confidence 457888888776655555554421 111111 11 0 111224667899999988887644 7898888777
Q ss_pred EEEec
Q 014977 253 QEVRR 257 (415)
Q Consensus 253 ~~~~~ 257 (415)
+.+..
T Consensus 203 ~~lP~ 207 (243)
T PF07250_consen 203 RTLPD 207 (243)
T ss_pred eeCCC
Confidence 77664
No 433
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.67 E-value=18 Score=33.89 Aligned_cols=187 Identities=9% Similarity=0.099 Sum_probs=100.2
Q ss_pred CCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC----CeEE--EE--e---C--CeEEEEEcC--C
Q 014977 97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR----DRIV--VV--L---E--HKIYVYSFV--D 161 (415)
Q Consensus 97 ~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~----~~~~--~~--~---d--~~i~iwd~~--~ 161 (415)
|...++++.... +-+.+||+ .|+.++.+. .+.++.+.+-. ++.. ++ . + ..|++|.+. +
T Consensus 66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 344455555555 88999995 566666664 23444443321 1221 22 2 2 579999774 3
Q ss_pred ceeeeEEec-------cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcC----C----cceEEEecCccceEEEEeC
Q 014977 162 LKLLHQIET-------LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG----L----NMIKLINAHDSHIACFTLT 225 (415)
Q Consensus 162 ~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~----~----~~~~~~~~~~~~i~~l~~s 225 (415)
+. +..+.. ......-+|+..++ ++.+.++....+|.+..|.+. + +.++.+.. ...+..|...
T Consensus 139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD 216 (381)
T PF02333_consen 139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD 216 (381)
T ss_dssp TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence 33 333321 11222345554443 455666666688887764432 2 34555554 3477888888
Q ss_pred CCCCEEEEEeCCCcEEEEEECCC--C---cEEEEEecCCCcccEEEEEeC--CCCC--EEEEEeCCCeEEEEEceec
Q 014977 226 LDGLLLATASTRGTLIRIFNTVD--G---TRLQEVRRGVDRAEIYSIALS--PNVQ--WLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~--~---~~~~~~~~~~~~~~v~~l~~s--pdg~--~l~s~s~dg~i~vwd~~~~ 293 (415)
....+|+.+-++.. |.-|+.+. + +.+....+......|-.|++- .+++ +|++.-.+++..||+.+..
T Consensus 217 De~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88889999999988 88888752 1 222222232244567777764 3443 4445555778999998754
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.32 E-value=5 Score=33.04 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=25.3
Q ss_pred cceEEEEeCCCC------CEEEEEeCCCcEEEEEECCC
Q 014977 217 SHIACFTLTLDG------LLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 217 ~~i~~l~~sp~g------~~l~s~s~dg~~I~vwd~~~ 248 (415)
..+..++|||.| -+|++...++. |.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence 378899999955 37899999999 99998653
No 435
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.11 E-value=31 Score=34.63 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=107.9
Q ss_pred eCCCCEEEEEe-C------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CCCCCCeEEEEECCCC
Q 014977 53 NQDYGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQS 124 (415)
Q Consensus 53 sp~g~~la~g~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~~~~i~vwd~~~~ 124 (415)
+..+.++++|+ . ..+..||..+........+. .......++...+ .+++.||.+ ....-..+..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC-EEEEEccccCCCcccceEEEecCCCC
Confidence 33455667777 4 34677887765433333331 2222334444455 445555555 3344578899998887
Q ss_pred CEEEEEE--ccCceeEEEEcCCeEEEE--eC-----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 125 RCIGEFA--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 125 ~~~~~~~--~~~~i~~l~~~~~~~~~~--~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
+....-. ....-.+++...+-.+++ .| ..+..||..+.+-...-.... .....+.... ++.+.++ |+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~-~g~iYi~-GG~ 436 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL-GGKLYII-GGG 436 (571)
T ss_pred ceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE-CCEEEEE-cCc
Confidence 7443222 112222333333334444 22 357777776543221111111 1122222222 2344444 554
Q ss_pred cCeE------EEEEcCCcceEEE---ecCccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCCCcc
Q 014977 196 RGQV------RIEHFGLNMIKLI---NAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 196 dg~v------~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
++.- ..++.....=..+ ..-....... .-++.+.+.|+.|+. .|..||..+.+....-.......
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 4433 2233333221111 1111111111 236777888887752 26778887766443311111122
Q ss_pred cEEEEEeCCCCCEEEEEeCCC-----eEEEEEceecc
Q 014977 263 EIYSIALSPNVQWLAVASDKG-----TVHIFSLRVRV 294 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg-----~i~vwd~~~~~ 294 (415)
.+.... -+++..++|+.|| +|..||..+++
T Consensus 515 ~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 222222 2567777888876 56666655544
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=16 Score=36.92 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=45.0
Q ss_pred ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeE-EEeccCCCeeEEEEeeeCCeEEEEecC
Q 014977 31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAG 106 (415)
Q Consensus 31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~ 106 (415)
.++..+....-.|. .+-.+.|+.+..+|++.-+|.++||++-...... ...+......|....+..+|.++.+.+
T Consensus 71 ~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 71 ISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred ccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 34444444444455 7889999999888888779999999986421111 111122333455555555666665544
No 437
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.97 E-value=1.6 Score=25.50 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEe--C--CcEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT--S--CGFRIY 70 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~--d--~~v~iw 70 (415)
.....-....|+|||+.|+..+ + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445678899999999999777 5 666665
No 438
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.83 E-value=26 Score=33.56 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
.|..+...+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 489999999889999999999999999985
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.57 E-value=26 Score=33.23 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=57.0
Q ss_pred EecCCCceEEEEeCCccCeEEE-EEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-----EE
Q 014977 180 LSHHSSTSVLACPGLQRGQVRI-EHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----RL 252 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----~~ 252 (415)
+...+++.++++ | ..|.+.. |+..... ...-......+..+.+.++|.+++++ ..|. + ++....++ ..
T Consensus 244 v~~~~dG~~~~v-g-~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 244 VNRSPDGDYVAV-S-SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEEDFDF 318 (398)
T ss_pred EEEcCCCCEEEE-E-CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCcccccce
Confidence 344556666655 3 4566665 4333221 22222335678899999999877665 4565 3 44444554 22
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
..+........+.++.|.+++..+ .++..|.+..
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~ 352 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLR 352 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEE-EEECCCcEEE
Confidence 333321122358899999887755 4556785544
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.42 E-value=0.095 Score=49.11 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=90.4
Q ss_pred CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc
Q 014977 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL 162 (415)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~ 162 (415)
-.......|.+.+.-++.+..+ ..+..|| +.++.+.+...++...+++|..++..++ ..+.+++||+.+.
T Consensus 34 lv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred ccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 3344556666655545555544 7788888 6677777777778888899988776655 6899999998653
Q ss_pred eeeeEEec-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCc
Q 014977 163 KLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGT 239 (415)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (415)
. .++++. ....... +.|++....++. |...|.+.|+...........+ |...+.++++.+.+. .+.++.|..
T Consensus 108 y-tqqLE~gg~~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 108 Y-TQQLESGGTSSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred h-HHHHhccCcchHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 2 222221 1111122 455555556655 6678888886655443333344 889999999999874 445555544
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.41 E-value=5.1 Score=32.99 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.3
Q ss_pred cEEEEEeCCCC------CEEEEEeCCCeEEEEEceec
Q 014977 263 EIYSIALSPNV------QWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 263 ~v~~l~~spdg------~~l~s~s~dg~i~vwd~~~~ 293 (415)
.+.+++|||-| .+|++.+.++.|.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 68899999954 47999999999999997754
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=19 Score=38.68 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=82.0
Q ss_pred EEeCCeEEEEEcCCceeeeEEeccCCCcceEEE-ecCCC-----ceEEEEeCCccCeEEEE----EcCCcc------eEE
Q 014977 148 VVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL-SHHSS-----TSVLACPGLQRGQVRIE----HFGLNM------IKL 211 (415)
Q Consensus 148 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~l~~~g~~dg~v~i~----~~~~~~------~~~ 211 (415)
+..|+.+.+|+.+++.....+.+-.+.+--+.+ .|.|. =+++.+.+ ..-.|.+. +..... ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccccccee
Confidence 337999999999887777666655543322222 22221 11222222 12233331 111111 122
Q ss_pred EecCccceEEEEeCCCCCEEEEEeCCCcEEE--EEECCCC---c-E----------------EEEEecCCCcccEEEEEe
Q 014977 212 INAHDSHIACFTLTLDGLLLATASTRGTLIR--IFNTVDG---T-R----------------LQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~--vwd~~~~---~-~----------------~~~~~~~~~~~~v~~l~~ 269 (415)
+......|.++....+|+.+++|- ||. |+ +|...+| + + +..+. +.+..+|..++.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEe
Confidence 334466788999888998777655 455 43 2222222 1 0 11122 235678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceec
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
...-..|.+-+..|+|.+|++...
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccccceeeeeccCceEEEEEccCC
Confidence 988889999999999999999874
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.09 E-value=27 Score=32.81 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=74.0
Q ss_pred eEEEEeeeCCeEEEEecCCCC------CCCCC-eEEEEECCC--CCE--EEEEE-ccCceeEEEEcCCeEEEEeCCeEEE
Q 014977 89 RIVEMLFRCNILALVGAGDNS------QYPPT-KVIIWDDHQ--SRC--IGEFA-FRSDVRSVKLSRDRIVVVLEHKIYV 156 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~------~~~~~-~i~vwd~~~--~~~--~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~i 156 (415)
....++|.+++.++++...+- ....+ .|.+++..+ |+. ...+. .-.....|++.+++.+++....|..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~ 94 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF 94 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence 356677888887777643110 00013 677776433 332 22332 2345688999999955555555655
Q ss_pred E-EcCC-c----eeeeEEeccCC-----CcceEEEecCCCceEEEEeCCcc------------------CeEEEEEcCCc
Q 014977 157 Y-SFVD-L----KLLHQIETLAN-----LRGLCCLSHHSSTSVLACPGLQR------------------GQVRIEHFGLN 207 (415)
Q Consensus 157 w-d~~~-~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~d------------------g~v~i~~~~~~ 207 (415)
| |... + +....+..-.. ......+.+.+++.+.++.|+.. |.|.-.+..+.
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 5 4321 1 21111221111 11244566666776666555321 22222333333
Q ss_pred ceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977 208 MIKLINAHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
....+...-.....++|+++|+++++-..+
T Consensus 175 ~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 175 KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 333333223345678899999887664433
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.37 E-value=46 Score=34.83 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=48.6
Q ss_pred cCccceEEEEeC---C----CCCEEEEEeCCCcEEEEEEC------CC---------CcEEEEEecCC-CcccEEEEEeC
Q 014977 214 AHDSHIACFTLT---L----DGLLLATASTRGTLIRIFNT------VD---------GTRLQEVRRGV-DRAEIYSIALS 270 (415)
Q Consensus 214 ~~~~~i~~l~~s---p----~g~~l~s~s~dg~~I~vwd~------~~---------~~~~~~~~~~~-~~~~v~~l~~s 270 (415)
....+|..|+|. . ..++|++-... . +.|+.. .. ..++..+.... ...+..+++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~-s-t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTET-S-TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCC-E-EEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence 456788888887 2 22466655543 4 666661 11 12344444210 12367889999
Q ss_pred C-CCCEEEEEeCCCeEEEEEce
Q 014977 271 P-NVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 271 p-dg~~l~s~s~dg~i~vwd~~ 291 (415)
| +.+.||.....|...||++.
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~ 176 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIK 176 (765)
T ss_pred cCccceEEEEeccCcEEEEEec
Confidence 8 45689999999999999993
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.19 E-value=14 Score=37.14 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=27.5
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP 74 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~ 74 (415)
....++++.-+|.|+.++.+. ||.|++|++.+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 345678888899999999999 99999999865
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=86.13 E-value=28 Score=32.16 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=79.0
Q ss_pred cCceeEEEEcCCeEEEE--eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE-EcCCcc
Q 014977 133 RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE-HFGLNM 208 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~-~~~~~~ 208 (415)
...+.++.+.+++.+++ ..|.++.- ...+ +.-..+.. .....+..+...+++..+++ | ..|.+.+- ...+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~v-g-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWML-A-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEE-e-cCCEEEEccCCCCCc
Confidence 45788899999988777 35544432 2222 21222221 11224455555556666554 4 46777652 222222
Q ss_pred eEEEec----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 209 IKLINA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 209 ~~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
-..... ....+..+.+.+++..+++ +.+|. |. .....|+.-..... ..-......+.|..+++.++ .+..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~-v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGT-LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCe-EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 111111 1235778899998876554 45665 43 44444554333321 11223577888876666655 56688
Q ss_pred eEEEEE
Q 014977 284 TVHIFS 289 (415)
Q Consensus 284 ~i~vwd 289 (415)
.|.-|+
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 777665
No 447
>PHA02713 hypothetical protein; Provisional
Probab=85.88 E-value=40 Score=33.72 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=19.4
Q ss_pred CCCEEEEEeCCC--cEEEEEECCCCcEE
Q 014977 227 DGLLLATASTRG--TLIRIFNTVDGTRL 252 (415)
Q Consensus 227 ~g~~l~s~s~dg--~~I~vwd~~~~~~~ 252 (415)
+|++.++|+.++ . +..||..+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYML-QDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceee-hhhcCccccccc
Confidence 778888998888 6 778888776644
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.79 E-value=29 Score=31.06 Aligned_cols=190 Identities=9% Similarity=0.036 Sum_probs=105.0
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEE---EEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce-
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE---FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK- 163 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~- 163 (415)
.+.++.++.+..+++-.+ .-+++.|+.+-..-.. +...+--.++..+.+-.+++ .+.-..+.|+.+..
T Consensus 88 l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 88 LFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence 344566677776666543 6789999776543333 33346667777777777777 57777788886543
Q ss_pred --eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCC
Q 014977 164 --LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRG 238 (415)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg 238 (415)
....+..... ....++.+++..+.+ ..|+-+.+-+.....--.+.+| ...+.++..+++-.+++...+
T Consensus 161 P~lagrya~~~~--d~~~v~ISGn~AYvA---~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-- 233 (370)
T COG5276 161 PQLAGRYALPGG--DTHDVAISGNYAYVA---WRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-- 233 (370)
T ss_pred ceeeeeeccCCC--CceeEEEecCeEEEE---EeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--
Confidence 2223322222 113344444443433 2556666644443332233332 336788888877766665543
Q ss_pred cEEEEEECCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
. +.+-|..+.+....+-.. ....+.++ .+.-.+++...+..+.-+-+-|+.+..
T Consensus 234 g-vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 234 G-VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred c-eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 3 778887665544333321 12222222 233345666666666667788877765
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.77 E-value=9.2 Score=36.12 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=66.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeE--EEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCe
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETF--RRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTK 115 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~ 115 (415)
....+++|.++.|++|.+.||+-. +..|.+++..+.+... ....+.....+..+.|..+- .++++. ..
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~--------~G 133 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD--------QG 133 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec--------CC
Confidence 344567999999999999999988 9999999985433222 22223455668888888763 333332 34
Q ss_pred EEEEECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE
Q 014977 116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV 149 (415)
Q Consensus 116 i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~ 149 (415)
+.+|..... +.++..+ +...|+-..|.++...+.
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 555553322 2233333 677788888888776665
No 450
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.76 E-value=41 Score=32.87 Aligned_cols=191 Identities=10% Similarity=0.032 Sum_probs=88.1
Q ss_pred CCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCC
Q 014977 97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL 174 (415)
Q Consensus 97 ~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 174 (415)
.++.+++..... -......+.| .+|.....+... .....+...++|.+++ ....++.+|+- |+.+..+......
T Consensus 113 ~~gl~~~~~~~~--~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDW--DSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT----BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCC--CCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCC-CCEEEeeecCCcc
Confidence 356677766110 0116777777 667777666632 2222267788998888 67888888874 5665555433321
Q ss_pred -cceEEEecCCCceEEEEeCC-------------ccCeEEEEEcCCcceEEEec--C-----------------------
Q 014977 175 -RGLCCLSHHSSTSVLACPGL-------------QRGQVRIEHFGLNMIKLINA--H----------------------- 215 (415)
Q Consensus 175 -~~~~~~~~~~~~~~l~~~g~-------------~dg~v~i~~~~~~~~~~~~~--~----------------------- 215 (415)
..-..+.+.++|.+|+.+.. .|..+.|+ .+++.+..+.. |
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 01123344455555554330 23323333 44443333210 0
Q ss_pred --ccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-c----ccEE-E--------------EEeCCC
Q 014977 216 --DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-R----AEIY-S--------------IALSPN 272 (415)
Q Consensus 216 --~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~----~~v~-~--------------l~~spd 272 (415)
-.-++++.+.+ ++.+|+++-.-.. |...|.++++....+-.+.. . ..+. - ..| +-
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-~~ 345 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-FW 345 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----S
T ss_pred CCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc-cc
Confidence 02378899988 5555665555557 88999888888776654210 0 0000 0 111 23
Q ss_pred CCEEEEEeCCC---eEEEEEceecc
Q 014977 273 VQWLAVASDKG---TVHIFSLRVRV 294 (415)
Q Consensus 273 g~~l~s~s~dg---~i~vwd~~~~~ 294 (415)
|++-+.--.+| .|.+||=....
T Consensus 346 gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 346 GQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp S-EEEEE-TTS---SEEEEE--TTG
T ss_pred cccceEEcCCCCeEEEEEEECCCCC
Confidence 56666667777 89999866544
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.09 E-value=45 Score=32.75 Aligned_cols=236 Identities=11% Similarity=0.070 Sum_probs=107.0
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
-..+|.++.+...|. +-+|++..+..||..+.+. +..........+..+.-+-++.+.++.. .-|.+.+.+
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gka-lql~s~~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~~ 233 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKA-LQLASPPLDKAINALIADVQGRLWVGTD-------QGVYLQEAE 233 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCcceEEccccceE-EEcCCCcchhhHHHHHHHhcCcEEEEec-------cceEEEchh
Confidence 456788888888875 4556655566677665332 3222212224455555555555555533 456666644
Q ss_pred CCCEEEEEE--ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 123 QSRCIGEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 123 ~~~~~~~~~--~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
..+...... ....|..+.-..+|.+-+ .++.+-.+.+......... +.+....++..+.-+.++.+- .+..++.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLW--v~t~~gi 311 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLW--VGTYGGI 311 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEe--eeccCce
Confidence 311111111 234444444444444444 4443433444333222211 222222244556666666554 3556666
Q ss_pred EEEEEcCCcceEEEecCcc-ceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977 199 VRIEHFGLNMIKLINAHDS-HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (415)
Q Consensus 199 v~i~~~~~~~~~~~~~~~~-~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (415)
+++-...-.....+....+ .+...+.+| .+..+--...-|. +.+-+-.+|..+.....- ....|+.+.+..+|.
T Consensus 312 v~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~- 388 (671)
T COG3292 312 VRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGR- 388 (671)
T ss_pred EEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCc-
Confidence 6663322222222222211 111122222 1112222222233 444555566655543321 223566667766554
Q ss_pred EEEEeCCCeEEEEEcee
Q 014977 276 LAVASDKGTVHIFSLRV 292 (415)
Q Consensus 276 l~s~s~dg~i~vwd~~~ 292 (415)
+-.++..+-+..|+.++
T Consensus 389 lWlgs~q~GLsrl~n~n 405 (671)
T COG3292 389 LWLGSMQNGLSRLDNKN 405 (671)
T ss_pred EEEEecccchhhhccCC
Confidence 44555553366777665
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.66 E-value=4.7 Score=40.18 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.2
Q ss_pred cEEEEEeCC----CCCEEEEEeCCCeEEEEEceeccc
Q 014977 263 EIYSIALSP----NVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 263 ~v~~l~~sp----dg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.+..++++. +..+|++.+.|+++++||+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 455566666 678999999999999999999997
No 453
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.56 E-value=34 Score=30.88 Aligned_cols=165 Identities=12% Similarity=0.142 Sum_probs=86.8
Q ss_pred CeEEEEECCCCCEEEEEEc-------cCceeEEEEcCC------eE-EEE--eCCeEEEEEcCCceeeeEEeccCCCc--
Q 014977 114 TKVIIWDDHQSRCIGEFAF-------RSDVRSVKLSRD------RI-VVV--LEHKIYVYSFVDLKLLHQIETLANLR-- 175 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~------~~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~-- 175 (415)
-+|.+||+.+++.++.+.. .+.+..+.+... +. ++. ..+.|.|+|+.+++.-+.+..+..+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 5889999999999998873 345677877652 22 222 35689999999887655543322111
Q ss_pred ---------------ceE--EEec-CCCceEEEEeCCccCeE-EEE---EcCC---------cceEEEecCccceEEEEe
Q 014977 176 ---------------GLC--CLSH-HSSTSVLACPGLQRGQV-RIE---HFGL---------NMIKLINAHDSHIACFTL 224 (415)
Q Consensus 176 ---------------~~~--~~~~-~~~~~~l~~~g~~dg~v-~i~---~~~~---------~~~~~~~~~~~~i~~l~~ 224 (415)
.+. ++.+ +++++.|.+..-....+ +|- ..+. ..++.+-........+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 111 1111 22333444322111111 220 0010 112222211235667889
Q ss_pred CCCCCEEEEEeCCCcEEEEEECCCC---cEEEEE-ecCCCcccEEEEEeCC--CCCEEEEE
Q 014977 225 TLDGLLLATASTRGTLIRIFNTVDG---TRLQEV-RRGVDRAEIYSIALSP--NVQWLAVA 279 (415)
Q Consensus 225 sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~-~~~~~~~~v~~l~~sp--dg~~l~s~ 279 (415)
+++|.++++--..+. |..|+.... +....+ .....-..+.++.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999998888888888 999998651 122222 2211134678889988 66655444
No 454
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.15 E-value=36 Score=30.91 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=52.9
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc----EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE----IYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~----v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
-+++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.. .+. -..++|-.|-+++-....+++|.|||=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3677788899999999988888 9999999999999887631 111 1124444555666666788899999963
No 455
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.83 E-value=5.4 Score=23.19 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=20.1
Q ss_pred EecCccceEEEEeCCCCCEEEEEeC-C--CcEEEEE
Q 014977 212 INAHDSHIACFTLTLDGLLLATAST-R--GTLIRIF 244 (415)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vw 244 (415)
+...........|+|||+.|+-.+. + |. -.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 3445556778899999998776554 3 55 5555
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.82 E-value=66 Score=33.70 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=69.5
Q ss_pred CCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCc----eeEEEeccCCC----------eeEEEEeeeCCeEEEEecCC
Q 014977 44 EIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFK----ETFRRDLKSGG----------FRIVEMLFRCNILALVGAGD 107 (415)
Q Consensus 44 ~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~l~s~~~ 107 (415)
..+...++|+| +.+.||+-. .|...||++.... ..+.... ... ..-..+.|.++...|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~-~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR-NISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc-CCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 34677899998 456888888 9999999992111 1111110 111 11225667666544444444
Q ss_pred CCCCCCCeEEEEECCCCCEEE---EEEccCceeEEEEcCC---eEEEEeCCeEEEEEcCC
Q 014977 108 NSQYPPTKVIIWDDHQSRCIG---EFAFRSDVRSVKLSRD---RIVVVLEHKIYVYSFVD 161 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~~~---~~~~~~~i~~l~~~~~---~~~~~~d~~i~iwd~~~ 161 (415)
..+.++|+++..... ..+....|.++.-++. ..+++....|...++..
T Consensus 224 ------~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 ------SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ------CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 788889988776533 2225678889988887 33444788888888865
No 457
>PHA03098 kelch-like protein; Provisional
Probab=82.44 E-value=55 Score=32.51 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCCCEEEEEe-CC------cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 54 QDYGCFAAGT-SC------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 54 p~g~~la~g~-d~------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
.++..++.|+ ++ .+..||..+........+... .....+....+..++++ |.+....-..+..||..+++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIG-GIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEe-CCCCCEecceEEEEcCCCCce
Confidence 4556667766 32 355666655433211111111 11122222334444444 432111225688889877654
Q ss_pred EEEEE--ccCceeEEEEcCCeEEEEe----C----CeEEEEEcCCcee
Q 014977 127 IGEFA--FRSDVRSVKLSRDRIVVVL----E----HKIYVYSFVDLKL 164 (415)
Q Consensus 127 ~~~~~--~~~~i~~l~~~~~~~~~~~----d----~~i~iwd~~~~~~ 164 (415)
...-. ....-.+++...+..+++. + +.+..||..+.+-
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 33211 1111222333334444441 1 4578888876543
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.33 E-value=53 Score=32.29 Aligned_cols=130 Identities=11% Similarity=0.159 Sum_probs=73.5
Q ss_pred CeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceE
Q 014977 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+.+.+-+-.+|..+.... -...|+.+++..++.+-+ ..+-+..|+.++ +-.+....+ .....+.++-.++++.+
T Consensus 354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dnsL 432 (671)
T COG3292 354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNSL 432 (671)
T ss_pred ceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCCE
Confidence 445555556666665543 245666677766665544 344566666555 222222222 12235677888888875
Q ss_pred EEEeCCccCeEEEEEcCCcceEEEe--c---CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLIN--A---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~~--~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
. . |+.+|.++......+....+. . ..+.+..+.+.|+|++-+.. .+| |..|+.+..
T Consensus 433 W-I-GTs~Glvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g--va~~~sq~~ 493 (671)
T COG3292 433 W-I-GTSGGLVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG--VAAWESQRR 493 (671)
T ss_pred E-E-eccCCeEecCccccchhcccccccCcCCcchhhhhccCCCCceEEEe-cce--eeeeccccc
Confidence 4 3 678888887544433322221 1 23457788899999853332 233 788876543
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=52 Score=35.45 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP 74 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~ 74 (415)
-......++|.|...++|.++ .|.|++|-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 334567889999999999999 99999998654
No 460
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=81.61 E-value=19 Score=36.91 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.5
Q ss_pred cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee
Q 014977 133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL 165 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~ 165 (415)
...|.+++.+.+..++. .+|.|+-|-+.....+
T Consensus 228 gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqL 261 (1267)
T KOG0783|consen 228 GHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQL 261 (1267)
T ss_pred ccceEEEEeecceeEEEeecceEEEeecCccccc
Confidence 56788899999988888 8999999998654433
No 461
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.53 E-value=13 Score=35.36 Aligned_cols=83 Identities=6% Similarity=-0.048 Sum_probs=54.3
Q ss_pred cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc--cCceeEEEEcC-----------------C
Q 014977 84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSR-----------------D 144 (415)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~-----------------~ 144 (415)
.+....+..+..+|++.+.+..+.- |.|.++|+.++..++..+. ...+.-+.... .
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDsl-----GRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSL-----GRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCC-----CcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 3445557778888988877776554 9999999999887776651 11111111110 1
Q ss_pred eEEEE----eCCeEEEEEcCCceeeeEEecc
Q 014977 145 RIVVV----LEHKIYVYSFVDLKLLHQIETL 171 (415)
Q Consensus 145 ~~~~~----~d~~i~iwd~~~~~~~~~~~~~ 171 (415)
..+++ .-|.|.||.++++..+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 22333 5899999999999888776543
No 462
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.26 E-value=16 Score=26.21 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.1
Q ss_pred eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
..+|. +.-||..+++....+.+ -.-.+.+++++|+.+|+.+
T Consensus 34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence 34577 89999988876444443 2257899999999977655
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.12 E-value=20 Score=38.53 Aligned_cols=104 Identities=14% Similarity=0.265 Sum_probs=65.1
Q ss_pred eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE--------eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCC
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA--------LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTP 306 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~--------~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 306 (415)
+.|+. +.+|+.+++.....+.+ ....|..+. |-|.=+++...+.--.|.|+-+.-.+....
T Consensus 96 TiDn~-L~lWny~~~~e~~~~d~--~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~-------- 164 (1311)
T KOG1900|consen 96 TIDNN-LFLWNYESDNELAEYDG--LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE-------- 164 (1311)
T ss_pred EeCCe-EEEEEcCCCCccccccc--hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--------
Confidence 45677 99999999777777766 334555553 344556666666666788988876653210
Q ss_pred CcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCC--ceEEEEecCCCEEEEEEeCCcEEE
Q 014977 307 SQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV--THFIAAFGSQNTVVIVSMDGSFYR 384 (415)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~dg~~~~ 384 (415)
+..+. ..++++.+ .+.++....+++|+.+|.||.+|-
T Consensus 165 -----------------------------------~~~f~------~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyE 203 (1311)
T KOG1900|consen 165 -----------------------------------LSIFN------TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYE 203 (1311)
T ss_pred -----------------------------------ccccc------cceeeecCCceEEEEEeccCCcEEEeecCCCEEE
Confidence 00010 12455543 333444556699999999998887
Q ss_pred EEEecC
Q 014977 385 CSFDPV 390 (415)
Q Consensus 385 ~~~~~~ 390 (415)
..+..+
T Consensus 204 l~Yq~~ 209 (1311)
T KOG1900|consen 204 LVYQAE 209 (1311)
T ss_pred EEEecc
Confidence 766553
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.22 E-value=24 Score=30.02 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=35.1
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEEEccCceeEEEEcCCeEEEE
Q 014977 98 NILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFAFRSDVRSVKLSRDRIVVV 149 (415)
Q Consensus 98 ~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~ 149 (415)
+..++++++ ..|.+|++. ..+.+..+..-+.|..+.++..|.+++
T Consensus 29 d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv 75 (215)
T PF14761_consen 29 DALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV 75 (215)
T ss_pred ceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence 555555443 889999987 345667777778999999999999988
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.81 E-value=29 Score=30.33 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=72.4
Q ss_pred EEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCC---cceEE-E---ecCccceEEEEe
Q 014977 154 IYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGL---NMIKL-I---NAHDSHIACFTL 224 (415)
Q Consensus 154 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~---~~~~~-~---~~~~~~i~~l~~ 224 (415)
-.+||+.+++.. .+....+ ..+..=...++|.++.+.|..+|. ++++.... .+... . -.....-.+...
T Consensus 48 s~~yD~~tn~~r-pl~v~td-~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTD-TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCC-CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 347888776543 3332222 233334556778888876655544 55533222 11100 0 112223334555
Q ss_pred CCCCCEEEEEeCCCcEEEEEECCC-CcEEEEE--ecC----CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 225 TLDGLLLATASTRGTLIRIFNTVD-GTRLQEV--RRG----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 225 sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~--~~~----~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
-|||+.|+.|+.+.....+|.-.. ......+ ... ....---.+...|||++++.+..+. .|||..+++.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 689999999888765355665422 1111111 110 0111122456679999998887765 6678887764
No 466
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=77.29 E-value=18 Score=37.58 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=54.5
Q ss_pred EEEeCCccCeEEEEEcCCcceEEE-ecCccceEEEEeCCCCCEEEE-EeCCC---c-EEEEEECCCC-cEEEEEecCCCc
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLAT-ASTRG---T-LIRIFNTVDG-TRLQEVRRGVDR 261 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s-~s~dg---~-~I~vwd~~~~-~~~~~~~~~~~~ 261 (415)
||+.....+.+.+-+..+...+.+ ..+..+|.+-+|||||+.|+- .+..+ . .|++-|+.+. ..+.++.. ..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--EN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--cc
Confidence 444433335777766777666666 667889999999999999987 44444 1 2888888653 33334544 34
Q ss_pred ccEEEEEeCCCCCEE
Q 014977 262 AEIYSIALSPNVQWL 276 (415)
Q Consensus 262 ~~v~~l~~spdg~~l 276 (415)
..|..-...++|...
T Consensus 399 aaiprwrv~e~gdt~ 413 (912)
T TIGR02171 399 AAIPRWRVLENGDTV 413 (912)
T ss_pred ccccceEecCCCCeE
Confidence 455555556666543
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.25 E-value=32 Score=26.79 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=51.9
Q ss_pred EEEEeCCCCEEEEEe-CCcEEEEEccCCc--------eeEEEeccCCCeeEEEEeee--CCeEEEEecCCCCCCCCCeEE
Q 014977 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~i~ 117 (415)
.-.|......|++++ .+.|.|++..... .+....+...-..+.+-.+. .+...|+-|+. ..|.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~------t~ll 76 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ------TSLL 76 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc------ceEE
Confidence 345666677888888 8999999875322 12222231111222222232 23344444444 7899
Q ss_pred EEECCCCCEEEEEEccCceeEEEEc
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLS 142 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~ 142 (415)
.||+.....+..-.....|+++.+-
T Consensus 77 aYDV~~N~d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 77 AYDVENNSDLFYKEVPDGVNAIVIG 101 (136)
T ss_pred EEEcccCchhhhhhCccceeEEEEE
Confidence 9999888776655566778887763
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.17 E-value=20 Score=33.96 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=86.8
Q ss_pred cCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeee-EE-eccCCC-c-ceE-EEecCCCceEEEEeCCccCeEEEEE-c
Q 014977 133 RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH-QI-ETLANL-R-GLC-CLSHHSSTSVLACPGLQRGQVRIEH-F 204 (415)
Q Consensus 133 ~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~-~~-~~~~~~-~-~~~-~~~~~~~~~~l~~~g~~dg~v~i~~-~ 204 (415)
...+..+-..||++.+. ....+.++++.+..... .+ ....+. . .+. .+..-..+.-+.+ +..||.|.-|- .
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv-~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV-VHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE-EcCCCceeeeeee
Confidence 45677788899998877 67888999886532211 11 111110 0 000 1110111222333 56788887743 2
Q ss_pred CC------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977 205 GL------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 205 ~~------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (415)
.. ..++.++-...++..+.-..+.+-+++-+.+|+ +.++.....+.+ -+.. .-..+.-+++||.+.+|++
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccchhee
Confidence 21 112222222334443333334456777788888 887765444433 2222 1225667899999999986
Q ss_pred EeCCCeEEEEEceecccC
Q 014977 279 ASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 279 ~s~dg~i~vwd~~~~~~~ 296 (415)
-. .|.|+++.+++....
T Consensus 375 e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 375 ED-QGKIRLAQLENRNPE 391 (733)
T ss_pred ec-CCceEEEEecCCCCC
Confidence 54 456999999887644
No 469
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.10 E-value=61 Score=29.90 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=30.4
Q ss_pred ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEec-----cCCCcceEEEecCC
Q 014977 135 DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET-----LANLRGLCCLSHHS 184 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 184 (415)
..++|+|.||+.+++ ..|.|++++ .++.....+.. .........++.+|
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 457899999998888 689999999 44443122211 11223556666666
No 470
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=56 Score=29.32 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=109.5
Q ss_pred CCCCEEEEEe-CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC---CEEE
Q 014977 54 QDYGCFAAGT-SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS---RCIG 128 (415)
Q Consensus 54 p~g~~la~g~-d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~---~~~~ 128 (415)
-.|++..++. +..+.+.|+.+- ...+.............+..+.+..+++.- + +-+.+-|+... ..+.
T Consensus 136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~--d-----~GL~ivDVSnp~sPvli~ 208 (370)
T COG5276 136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWR--D-----GGLTIVDVSNPHSPVLIG 208 (370)
T ss_pred ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEe--C-----CCeEEEEccCCCCCeEEE
Confidence 3477777777 777888888642 222322221222222344455555554432 2 77888886554 3444
Q ss_pred EEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEe--ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977 129 EFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE--TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG 205 (415)
Q Consensus 129 ~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~ 205 (415)
.......+.++..+++..+++ .+..+.+-|..+.+....+. ...++.....+....+..+++ -...|...++ ..
T Consensus 209 ~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yva--dga~gl~~id-is 285 (370)
T COG5276 209 SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVA--DGAKGLPIID-IS 285 (370)
T ss_pred EEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeee--ccccCceeEe-cc
Confidence 444566899999999988888 77788888877666444442 223333333344444433332 2222322222 22
Q ss_pred CcceEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977 206 LNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 206 ~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
...-..+..| ......+.. .|.++..+..+ . ..+-|....+......+ ....+.+.+.+-+.+.+.+...
T Consensus 286 np~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 286 NPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred CCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeec
Confidence 1111111111 111122222 23334444333 2 33444433222212111 1122333444445567888888
Q ss_pred CCeEEEEEc
Q 014977 282 KGTVHIFSL 290 (415)
Q Consensus 282 dg~i~vwd~ 290 (415)
++.+.||+.
T Consensus 360 ~~gl~i~~~ 368 (370)
T COG5276 360 NGGLSIIEY 368 (370)
T ss_pred CCCEEEEEe
Confidence 888999985
No 471
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.67 E-value=36 Score=36.30 Aligned_cols=116 Identities=12% Similarity=-0.044 Sum_probs=71.7
Q ss_pred CeEEEEECCCCCE--------EEEEE----ccCceeEEEEcCCeE---EEE-eCCeEEEEEcCCcee-eeEEeccCCCcc
Q 014977 114 TKVIIWDDHQSRC--------IGEFA----FRSDVRSVKLSRDRI---VVV-LEHKIYVYSFVDLKL-LHQIETLANLRG 176 (415)
Q Consensus 114 ~~i~vwd~~~~~~--------~~~~~----~~~~i~~l~~~~~~~---~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~ 176 (415)
-.|..||+++-.. ++.-. ......++.|+|.-. .+. .|+.|++..+..... +..+ .-...
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~---p~t~~ 200 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF---PVTNS 200 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc---Ccccc
Confidence 5889999765321 11111 133455677887532 222 788888887643221 1221 12235
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC----ccceEEEEeCCCCCEEEE
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH----DSHIACFTLTLDGLLLAT 233 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~----~~~i~~l~~sp~g~~l~s 233 (415)
..+++|++.|+.+++ |...|++.-+....+....+... ...|.+|.|-..-.+|++
T Consensus 201 ~Tav~WSprGKQl~i-G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFI-GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeeEEeccccceeeE-ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 678888888988876 88889888777777655554322 367889999877776664
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.50 E-value=31 Score=30.91 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=36.9
Q ss_pred EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe------CCCeEEEEEceecc
Q 014977 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS------DKGTVHIFSLRVRV 294 (415)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s------~dg~i~vwd~~~~~ 294 (415)
|++||..+.+-...-.+ -.+.|.+|.|..+.++++.|. ....+..||+++..
T Consensus 18 lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 99999876654432222 567899999987777777664 34578888887765
No 473
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=75.71 E-value=1.6 Score=44.47 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=47.9
Q ss_pred ccceEEEEeCC---CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE-----------EeCCCCCEEEEEeC
Q 014977 216 DSHIACFTLTL---DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI-----------ALSPNVQWLAVASD 281 (415)
Q Consensus 216 ~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l-----------~~spdg~~l~s~s~ 281 (415)
...+.-+.|.| +..++..+-.++. |++........ ..+.. |...+..+ ..||||..++.+..
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~-~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR-SLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCc-eeEeeechHHH-HHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 44455566655 5567777777888 88876644322 12222 43333333 36899999999999
Q ss_pred CCeEEEEEcee
Q 014977 282 KGTVHIFSLRV 292 (415)
Q Consensus 282 dg~i~vwd~~~ 292 (415)
||.+++|.+.-
T Consensus 256 dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 256 DGSVGFYQIYI 266 (1283)
T ss_pred CCccceeeeee
Confidence 99999998763
No 474
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.25 E-value=8.1 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.4
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
.++.++.++. +..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 5777888898 999999999887653
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.86 E-value=74 Score=29.78 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=97.6
Q ss_pred eCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 014977 53 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF 132 (415)
Q Consensus 53 sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~ 132 (415)
.-+++.++...+|.+.-.|.++...+....+......+..-....++.++++... +.+..+|..+|+.+.....
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------GKLYALDASTGTLVWSRNV 139 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc------ceEEEEECCCCcEEEEEec
Confidence 3355555544477666667666555443332110112222222236776666544 7899999889999998885
Q ss_pred cC--ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC-CcceEEEecCCCceEEEEeCCc--cCeEEE-EEc
Q 014977 133 RS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPGLQ--RGQVRI-EHF 204 (415)
Q Consensus 133 ~~--~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~--dg~v~i-~~~ 204 (415)
.. .+..-.+-.++.... .++.++..|..+++.......... ......-....++..+ . +.. ++.+.- ...
T Consensus 140 ~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy-~-~~~~~~~~~~a~~~~ 217 (370)
T COG1520 140 GGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVY-V-GSDGYDGILYALNAE 217 (370)
T ss_pred CCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEE-E-ecCCCcceEEEEEcc
Confidence 44 222223334555554 368888888888888766544321 1111100001122222 2 322 332222 222
Q ss_pred CCcceEEEecC----ccceEEEEeCCC-----CCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 205 GLNMIKLINAH----DSHIACFTLTLD-----GLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 205 ~~~~~~~~~~~----~~~i~~l~~sp~-----g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
++......+.+ ...+.....-.. +.-+..++.++. +...|..+++.+..+..
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~-~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGK-LLCLDADTGELIWSFPA 278 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCe-EEEEEcCCCceEEEEec
Confidence 34333332111 000100001111 112356777888 88889999999888775
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.70 E-value=0.44 Score=44.86 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=87.5
Q ss_pred EEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCc
Q 014977 140 KLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD 216 (415)
Q Consensus 140 ~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~ 216 (415)
.|.+.+.-++ .+..+..||- .++....... +...+.+.++-++..++...-..+.+.+|+.+.+....+....
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDK-AGQVILELNP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhh-hcceecccCC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3444433333 4666777773 2333322222 2245677777777666666668889999998876665554321
Q ss_pred -cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE
Q 014977 217 -SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285 (415)
Q Consensus 217 -~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 285 (415)
..-.-+.|++.+..++.+...|. +.|++..+.+.+... +.|...+++++|.+.+..+ .++.|..+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~vi-l~dcd~~L 182 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDYVI-LCDCDNTL 182 (615)
T ss_pred cchHHHHhhccCCccccccccccc-eEEEeccchhhhhhh--cccccceeEEEecccceee-ecCcHHHH
Confidence 11122678998899999988898 999997666554333 3366789999999876544 44445433
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.48 E-value=83 Score=30.13 Aligned_cols=129 Identities=11% Similarity=0.015 Sum_probs=79.1
Q ss_pred EEEEEeCCCCEEEEEeCCcEEEEEccCCcee--EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+.+-|...++.|.+...|.+.=|.+.+.+.- ..... .....+.++.|++|.++++....+ +.|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCc
Confidence 3445555556666555777777777643322 22222 233488999999999999998877 999999964444
Q ss_pred EEEEEE-----ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce-eeeEEeccCCCcceEEEec
Q 014977 126 CIGEFA-----FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 126 ~~~~~~-----~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (415)
....+. ....|.+..|..+..+.+ .+..+.+|.....+ .++..+.+.-.+.-..+.+
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP 163 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcc
Confidence 333332 234588999988765555 78888888774432 2333344443333333333
No 478
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=73.32 E-value=1.1e+02 Score=30.92 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=114.9
Q ss_pred ceEEEEEeCCCCEEEEEeC------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 46 ELISVSWNQDYGCFAAGTS------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+-.++.+||++++|-+-| =++++.|+.+++.... .+ ......++|..++..+.-...++......|.-.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d-~i---~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h 205 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD-EI---TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRH 205 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch-hh---cccccceEEecCCCeEEEEEEcCCCCcceEEEE
Confidence 5778889999999997652 2378888887654332 11 222445667776655544444433333344444
Q ss_pred ECCC--CCEEEEEE--ccCceeEEEEcCCeEEEE------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 120 DDHQ--SRCIGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 120 d~~~--~~~~~~~~--~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
.+.+ .+....+. ...-...+.-+....+++ ..+.+++.+..+......+-.......-..+....+ .++
T Consensus 206 ~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d-~f~ 284 (682)
T COG1770 206 RLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGD-RFY 284 (682)
T ss_pred ecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCc-EEE
Confidence 4444 22222233 223333444444555554 245678887765433222211111001111222222 233
Q ss_pred EEeCCccC-eEEEEEcCC----cceEEEecCccceEEEEeCCCCCEEEEEeCCCc--EEEEEECCCCcEEEEEecCCCcc
Q 014977 190 ACPGLQRG-QVRIEHFGL----NMIKLINAHDSHIACFTLTLDGLLLATASTRGT--LIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 190 ~~~g~~dg-~v~i~~~~~----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
+- ...+| ..+|..... ..-+.+..|...+.--.++--..+|+....++. .|++++.++++... +.-. ...
T Consensus 285 i~-sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~-~~a 361 (682)
T COG1770 285 IL-SNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFD-DEA 361 (682)
T ss_pred EE-ecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEec-chh
Confidence 32 33444 344422111 223445567666665556655566665544432 37888887776543 3211 222
Q ss_pred cEEEEEeCC--CCCEEE--EEeC--CCeEEEEEceeccc
Q 014977 263 EIYSIALSP--NVQWLA--VASD--KGTVHIFSLRVRVV 295 (415)
Q Consensus 263 ~v~~l~~sp--dg~~l~--s~s~--dg~i~vwd~~~~~~ 295 (415)
-...+..++ +...|- ..+. -.++.=+|+.+++.
T Consensus 362 y~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er 400 (682)
T COG1770 362 YSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGER 400 (682)
T ss_pred hhccccCCCCCCCccEEEEeecccccceeEEeeccCCcE
Confidence 333444443 222222 2222 34577777777764
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.18 E-value=71 Score=28.79 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=79.1
Q ss_pred eeEEEEcCCeEEEE-e--------------CCeEEEEEcCCceeeeEEeccCCC----cceEEEecCC--C---ceEEEE
Q 014977 136 VRSVKLSRDRIVVV-L--------------EHKIYVYSFVDLKLLHQIETLANL----RGLCCLSHHS--S---TSVLAC 191 (415)
Q Consensus 136 i~~l~~~~~~~~~~-~--------------d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~--~---~~~l~~ 191 (415)
|..+.+.+.+++.+ . .-+|.+||+.+.+.++++..+... .....+..+. . ..++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 55666666655554 1 127889999999988887554321 1233333332 1 123333
Q ss_pred eCCccCeEEEEEcCCcceEEEecC--------------------ccceEEEEeCC---CCCEEEEEeCCCcEEEEEECCC
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINAH--------------------DSHIACFTLTL---DGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~~--------------------~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
+-...+-+.+++........+..+ ...+..++.+| +|+.|.-....+. ++|.+.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T 160 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPT 160 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEH
Confidence 333334555555544322222111 12255666655 6666666655442 3443322
Q ss_pred -----C---------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 249 -----G---------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 249 -----~---------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
. +.+..+-. .......++++++|.++++--..+.|..|+..+.-
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGD--KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPY 218 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB
T ss_pred HHhhCccccccccccccceeccc--cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCc
Confidence 1 01122211 11345678889999999999999999999988643
No 480
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=73.06 E-value=15 Score=32.26 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=22.6
Q ss_pred EEEeCCCceEEEEec----CCCEEEEEEeCCcEEEE
Q 014977 354 QFHIPEVTHFIAAFG----SQNTVVIVSMDGSFYRC 385 (415)
Q Consensus 354 ~~~~~~~~~~~~~~~----~~~~i~~~~~dg~~~~~ 385 (415)
++++|.-+..+++.+ -+-+|+++|.||.||..
T Consensus 220 ~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 220 QVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred EEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 566665555554432 45899999999998875
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.01 E-value=48 Score=25.88 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=43.1
Q ss_pred eeCCeEEEEecCCCCCCCCCeEEEEECCC--------CCEEEEEEccCceeEEEEcC-------CeEEEEeCCeEEEEEc
Q 014977 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQ--------SRCIGEFAFRSDVRSVKLSR-------DRIVVVLEHKIYVYSF 159 (415)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--------~~~~~~~~~~~~i~~l~~~~-------~~~~~~~d~~i~iwd~ 159 (415)
|+.....|+.+... ++|.|++... ...+..+.....|++|+-.+ |-.++.....+..||+
T Consensus 6 fDG~~pcL~~aT~~-----gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTG-----GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecC-----CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 44444455555544 8899988653 34566777788888886433 2223338899999999
Q ss_pred CCceeee
Q 014977 160 VDLKLLH 166 (415)
Q Consensus 160 ~~~~~~~ 166 (415)
.....+.
T Consensus 81 ~~N~d~F 87 (136)
T PF14781_consen 81 ENNSDLF 87 (136)
T ss_pred ccCchhh
Confidence 7765543
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.39 E-value=67 Score=27.36 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=36.4
Q ss_pred CEEEEEeCCCcEEEEEECC--CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 229 LLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
..|..+..... |.+|++. ..+.+..|.. -+.|..+.++..|.+|++-=.+
T Consensus 29 d~Lfva~~g~~-Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCK-VEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCE-EEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence 34444455566 9999987 3456777774 4689999999999999986543
No 483
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.22 E-value=16 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
.+..++.+|. |.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~-l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGY-LYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSE-EEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCE-EEEEECCCCCEEEeeeCC
Confidence 3556688999 999999999999888763
No 484
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.03 E-value=1.5e+02 Score=31.09 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.4
Q ss_pred CCcEEEEEECCCCcEEEEEec
Q 014977 237 RGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+|. |+-+|.++|+.+..+..
T Consensus 335 ~G~-I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 335 SGV-IRAFDVNTGALVWAWDP 354 (764)
T ss_pred CcE-EEEEECCCCcEeeEEec
Confidence 577 99999999999988864
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.78 E-value=81 Score=28.06 Aligned_cols=202 Identities=10% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCC-eEEEEEcCCc
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEH-KIYVYSFVDL 162 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~-~i~iwd~~~~ 162 (415)
....-..++..+++..-.++... +.|--.|..+|+....-- ....-..|..-||+..-+ ..+ .|.-+|-++.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ 134 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTL 134 (353)
T ss_pred CCCCccccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCccc
Q ss_pred eee-eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977 163 KLL-HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLI 241 (415)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I 241 (415)
+.. ..+.............+++.+.+-.+ +...-.=+++..+......-.......+.|+..|+|..-++.-.+.. |
T Consensus 135 evt~f~lp~~~a~~nlet~vfD~~G~lWFt-~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna-i 212 (353)
T COG4257 135 EVTRFPLPLEHADANLETAVFDPWGNLWFT-GQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA-I 212 (353)
T ss_pred ceEEeecccccCCCcccceeeCCCccEEEe-eccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-e
Q ss_pred EEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 242 RIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 242 ~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
-..|..++.....-........-..+.-+|.|+.-++-...+.++.||-....
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
No 486
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=69.38 E-value=73 Score=32.94 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccceEEEEeC----CCCC--EEEEEeCCCcEEEEEECCCCc-----EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 216 DSHIACFTLT----LDGL--LLATASTRGTLIRIFNTVDGT-----RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 216 ~~~i~~l~~s----p~g~--~l~s~s~dg~~I~vwd~~~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
+...+.|+.+ .++. .|+.|+++|+.+++-.+.... .+.+++.-.+..+|..|.+++....|++|+..|.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 5556666665 5555 477899999856666554411 3455554335578999999998888999998874
Q ss_pred EE
Q 014977 285 VH 286 (415)
Q Consensus 285 i~ 286 (415)
++
T Consensus 487 ~q 488 (737)
T KOG3611|consen 487 VQ 488 (737)
T ss_pred EE
Confidence 44
No 487
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=69.22 E-value=1.2e+02 Score=29.97 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=101.3
Q ss_pred CCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc---eeeeEEeccCCCcceEEEec
Q 014977 112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~ 182 (415)
..+.|.|.| .+.+.+..+. ....|.++.|-.+.-+++ .-.-+.+.|+.+. +.+..++... ..--++|
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG---fS~YLHP 377 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG---FSDYLHP 377 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECcc---chhceeE
Confidence 447888888 7777777776 467899999999999888 4566889999764 4555555433 3344667
Q ss_pred CCCceEEEEeCCccCe---------EEE--EEcCC----cceEEEec-C---c----cceEEEEeCCCCCEEEEEeC---
Q 014977 183 HSSTSVLACPGLQRGQ---------VRI--EHFGL----NMIKLINA-H---D----SHIACFTLTLDGLLLATAST--- 236 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~---------v~i--~~~~~----~~~~~~~~-~---~----~~i~~l~~sp~g~~l~s~s~--- 236 (415)
-.++.+|-+ |..... ++| ++.+. +.+....- . . ..-.++.|+++..+|+.--.
T Consensus 378 ~~e~~LlGi-G~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~ 456 (521)
T PF09826_consen 378 YDENHLLGI-GKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSY 456 (521)
T ss_pred CCCCeEEEE-cccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEcc
Confidence 667766655 543333 555 55432 11222111 1 1 12346778887777664332
Q ss_pred ----CCcEEEEEECCCCc---EEEEEecCCCcc-------cEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 237 ----RGTLIRIFNTVDGT---RLQEVRRGVDRA-------EIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 237 ----dg~~I~vwd~~~~~---~~~~~~~~~~~~-------~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
-.. +.|+++...+ ....+. |.. .+....+. +..|.+.+.++ |+++|+++-
T Consensus 457 ~~~~~~g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS~~~-i~~~~l~t~ 520 (521)
T PF09826_consen 457 GYFNFQG-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVSDNG-IKAYDLNTL 520 (521)
T ss_pred Cccccce-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEECCE-EEEEehHhc
Confidence 123 7788776222 233333 332 25555554 34677777554 999998764
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.44 E-value=15 Score=36.64 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=29.1
Q ss_pred ceEEEEeCC----CCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 218 HIACFTLTL----DGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 218 ~i~~l~~sp----~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
....++++. +..+|++.+.|+. +|+||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence 345566666 6679999999999 9999999999977654
No 489
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=67.16 E-value=16 Score=19.50 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=16.9
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIF 288 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vw 288 (415)
..+++.+++|+++++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666654
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=65.83 E-value=1.9e+02 Score=30.91 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=45.1
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 222 FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 222 l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.++.|-..++.+|- ... +++||+-..++++..........|..+.+. +..|++|.....+.++..+...
T Consensus 939 ~Ai~~f~~~~Lagv-G~~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGV-GRF-LRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred eEEeccCCEEEEec-ccE-EEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCC
Confidence 45566555555544 345 999999877776655543245578888774 5678888777667777665544
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=65.39 E-value=1.4e+02 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=38.2
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE--EEEEe---cCCCcccEEEEEeCCCC
Q 014977 215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVR---RGVDRAEIYSIALSPNV 273 (415)
Q Consensus 215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~---~~~~~~~v~~l~~spdg 273 (415)
.-...+.|+|.|||++|++--..|. |++++..++.. +..+. ..........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3455688999999987776655688 99988655432 21121 11124568899999874
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=64.99 E-value=67 Score=33.12 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred CCccCeEEEEEcC------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-CCcccEE
Q 014977 193 GLQRGQVRIEHFG------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIY 265 (415)
Q Consensus 193 g~~dg~v~i~~~~------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~ 265 (415)
|.-||++-.+-.. +.+...+.....++.+.++..| ++.++.+|. |.++...+......+..+ .+...|+
T Consensus 597 gl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~-V~vi~~tt~~~~~~leahqee~~~Vt 672 (925)
T KOG3522|consen 597 GLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQED---FVWASEGGC-VHVIPSTTFIRSWDLEAHQEEAHSVT 672 (925)
T ss_pred CccCCccccccCCCCCCCCCCCccccccCCccccchhhhhc---eeeeecCCc-eEEEechhccccchhHHHHhhcceEE
Confidence 4456665553322 2233344455667777777655 566778899 999998776555444331 1344799
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
++.....|-+++.++.|- +++++.++-.
T Consensus 673 hm~~~~~gVwvafasG~~-~rlfhtetl~ 700 (925)
T KOG3522|consen 673 HMLYLDNGVWVAFASGDE-ERLFHTETLW 700 (925)
T ss_pred EEEeeCCceEEEEcCCCE-EEEecccccC
Confidence 999988888887776665 5666655544
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=64.93 E-value=1.2e+02 Score=31.39 Aligned_cols=141 Identities=9% Similarity=0.039 Sum_probs=74.9
Q ss_pred EEEEEeCCCCEEEEEe--C---CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE--
Q 014977 48 ISVSWNQDYGCFAAGT--S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-- 120 (415)
Q Consensus 48 ~~l~~sp~g~~la~g~--d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd-- 120 (415)
.-+.|-.|..+.+++. . ..+++|.-+..-.... ......-..+.|.|+|..+++-+.|..-....|..+.
T Consensus 205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~s---ep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN 281 (1243)
T COG5290 205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSAS---EPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN 281 (1243)
T ss_pred eEEEEccCcceeeecchhcccccceeeecccccccccc---CCcccchhccccccCCceeeeeccCCCCCcceEEEEccC
Confidence 3466777778888776 2 3467776442111010 0112223347799999888887655222224555655
Q ss_pred -CCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 121 -DHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 121 -~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
++-|+.-........+..++|+-....++ ..+.+.+|...+..-.-........+..+.|+|..++.+++.
T Consensus 282 GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 282 GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred CcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 12222222222344455566665544444 678899998765443322222333346677777766655543
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.14 E-value=28 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKL 141 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~ 141 (415)
+.|.++|..+++.+..+........+.|
T Consensus 14 ~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 14 NTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 8999999988888888775444445544
No 495
>PHA03098 kelch-like protein; Provisional
Probab=62.63 E-value=1.7e+02 Score=29.08 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=34.0
Q ss_pred CCCEEEEEeCC--------CcEEEEEECCCCcEEEEEecCC-CcccEEEEEeCCCCCEEEEEeCC-----CeEEEEEcee
Q 014977 227 DGLLLATASTR--------GTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPNVQWLAVASDK-----GTVHIFSLRV 292 (415)
Q Consensus 227 ~g~~l~s~s~d--------g~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~ 292 (415)
++++++.|+.+ .. +.+||..+++-.. +.... .......+.+ ++++++.|+.+ +.|.+||.++
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~-v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNI-VESYNPVTNKWTE-LSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccce-EEEecCCCCceee-CCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 56666666643 23 7888887665332 11100 1111112222 66777777654 4688888776
Q ss_pred cc
Q 014977 293 RV 294 (415)
Q Consensus 293 ~~ 294 (415)
++
T Consensus 513 ~~ 514 (534)
T PHA03098 513 NT 514 (534)
T ss_pred CE
Confidence 54
No 496
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=61.29 E-value=8.3 Score=38.11 Aligned_cols=79 Identities=24% Similarity=0.272 Sum_probs=54.6
Q ss_pred cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec----------CCCcccEEEEEeCCCC
Q 014977 204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR----------GVDRAEIYSIALSPNV 273 (415)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~----------~~~~~~v~~l~~spdg 273 (415)
.....+..+++|..++..++|.+.|.+|++++..|..|.++.+. +.+.+... ......|..++|+...
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim--et~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s 380 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM--ETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVS 380 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec--cccccccccccccccchhcchHHHHHHHhhhhhc
Confidence 34456778899999999999999999999999888656665542 22211111 0012245567888888
Q ss_pred CEEEEEeCCCe
Q 014977 274 QWLAVASDKGT 284 (415)
Q Consensus 274 ~~l~s~s~dg~ 284 (415)
++++.++.+|.
T Consensus 381 ~~r~~gsc~Ge 391 (788)
T KOG2109|consen 381 TIRTAGSCEGE 391 (788)
T ss_pred ceEeecccCCC
Confidence 88888887763
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.74 E-value=1.6e+02 Score=28.11 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=75.8
Q ss_pred eeEEEEcCCeEEEE--eCCeEEE-EEcCCceee-eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----
Q 014977 136 VRSVKLSRDRIVVV--LEHKIYV-YSFVDLKLL-HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---- 207 (415)
Q Consensus 136 i~~l~~~~~~~~~~--~d~~i~i-wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---- 207 (415)
...+...+++.+++ ..|.+.. || .++.. ..+.. .....+..+.+.+++.++++ + ..|.+..-...+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~-g-~~G~l~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-ASARRIQNMGWRADGGLWLL-T-RGGGLYVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-CCccceeeeeEcCCCCEEEE-e-CCceEEEecCCCCcccc
Confidence 44456667776665 4454433 33 23221 11111 11224556666667777655 3 5677665333332
Q ss_pred -ceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe-cCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 208 -MIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 208 -~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
....+.. ....+..+.|.+++..+++ +..|. +... ...|+.-.... ...-......+.|.++++.++ .+.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~-v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGI-LLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE-ECCCc-EEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCc
Confidence 1222221 2235888999988876555 45675 5444 34555433333 111345688999987766555 45688
Q ss_pred eEEEE
Q 014977 284 TVHIF 288 (415)
Q Consensus 284 ~i~vw 288 (415)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76544
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=59.48 E-value=2.5e+02 Score=30.12 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=73.2
Q ss_pred CCeEEEEEC-CCCCEEEEEE---ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 113 PTKVIIWDD-HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 113 ~~~i~vwd~-~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
++.++.|++ +.|+.+.-+. -.+.+.+|+-..+ .+++ ....+++||+...++++......-+..+..+.+...
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-- 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-- 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecce--
Confidence 356777774 3444222222 3455555554444 4444 789999999988777665544444445666666543
Q ss_pred EEEEeCCccCeEEE-EEcCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 188 VLACPGLQRGQVRI-EHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 188 ~l~~~g~~dg~v~i-~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
.+++.-..++...+ |....+.+..+... ...++++.+-..+ .+|.+..-|. +.+-.+
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~-tvagaDrfGN-i~~vR~ 1047 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYD-TVAGADRFGN-IAVVRI 1047 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCC-ceeeccccCc-EEEEEC
Confidence 34443344444444 77777776666543 3445555554333 4666666676 655544
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.13 E-value=21 Score=25.49 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=24.1
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEcc
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCE 73 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~ 73 (415)
..-+.|.++|++++|.+++ .+.|++|+..
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3456889999999999888 8899999865
No 500
>PHA02790 Kelch-like protein; Provisional
Probab=57.74 E-value=1.9e+02 Score=28.26 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977 227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV 294 (415)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~ 294 (415)
+|++.+.| |. +.+||..+.+-...-...........+. -+|+..+.|+.+ ..+..||..+++
T Consensus 407 ~~~IYv~G---G~-~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RN-AEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---Cc-eEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 56655555 35 7788887665332111100111222222 366777777754 357788877654
Done!