Query 014977
Match_columns 415
No_of_seqs 772 out of 2364
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 3.9E-40 1.3E-44 302.6 36.3 284 38-388 26-320 (321)
2 1vyh_C Platelet-activating fac 100.0 2E-39 7E-44 308.1 35.7 281 38-387 102-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 3.2E-38 1.1E-42 292.4 38.4 282 38-386 49-340 (340)
4 3vu4_A KMHSV2; beta-propeller 100.0 1E-37 3.5E-42 290.6 39.6 305 39-394 14-341 (355)
5 2ynn_A Coatomer subunit beta'; 100.0 5.6E-38 1.9E-42 286.1 35.3 246 38-296 7-263 (304)
6 2pbi_B Guanine nucleotide-bind 100.0 5.9E-38 2E-42 292.1 35.6 285 37-386 57-354 (354)
7 4gqb_B Methylosome protein 50; 100.0 2.5E-37 8.6E-42 286.3 30.7 280 41-389 27-331 (344)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-36 6.2E-41 281.1 34.8 294 39-389 10-335 (345)
9 3frx_A Guanine nucleotide-bind 100.0 7E-36 2.4E-40 274.1 36.3 291 39-389 12-317 (319)
10 2xzm_R RACK1; ribosome, transl 100.0 1.8E-35 6.1E-40 274.2 38.5 293 38-389 15-340 (343)
11 4g56_B MGC81050 protein; prote 100.0 2.3E-37 7.9E-42 288.4 25.0 282 40-389 38-343 (357)
12 1erj_A Transcriptional repress 100.0 1.2E-35 3.9E-40 280.7 36.8 280 42-389 62-389 (393)
13 4ery_A WD repeat-containing pr 100.0 3E-35 1E-39 268.9 36.3 283 39-388 18-311 (312)
14 3ow8_A WD repeat-containing pr 100.0 2.8E-35 9.4E-40 270.3 32.9 239 40-291 76-320 (321)
15 3zwl_B Eukaryotic translation 100.0 1.6E-34 5.4E-39 269.3 38.2 283 39-389 27-346 (369)
16 1nr0_A Actin interacting prote 100.0 2.2E-35 7.5E-40 294.6 34.5 289 39-388 185-610 (611)
17 3iz6_a 40S ribosomal protein R 100.0 1.4E-36 4.6E-41 285.8 23.6 289 38-389 60-375 (380)
18 4gqb_B Methylosome protein 50; 100.0 9.7E-36 3.3E-40 275.7 27.8 243 42-295 80-334 (344)
19 2hes_X YDR267CP; beta-propelle 100.0 1.3E-34 4.5E-39 266.9 33.6 243 39-294 9-282 (330)
20 1vyh_C Platelet-activating fac 100.0 4.4E-35 1.5E-39 278.3 29.9 243 38-291 144-410 (410)
21 2ymu_A WD-40 repeat protein; u 100.0 4.7E-34 1.6E-38 282.9 38.4 275 38-386 297-577 (577)
22 1gxr_A ESG1, transducin-like e 100.0 1.5E-33 5.1E-38 259.5 39.0 279 41-388 48-336 (337)
23 1nr0_A Actin interacting prote 100.0 1.7E-34 5.9E-39 288.1 34.7 290 38-389 53-397 (611)
24 4aow_A Guanine nucleotide-bind 100.0 1.7E-33 5.9E-38 259.7 37.4 293 39-389 33-337 (340)
25 4g56_B MGC81050 protein; prote 100.0 2.5E-35 8.5E-40 274.7 23.6 246 40-295 90-346 (357)
26 3ei3_B DNA damage-binding prot 100.0 1.2E-33 4.2E-38 265.7 32.4 283 38-389 67-382 (383)
27 1got_B GT-beta; complex (GTP-b 100.0 2E-33 7E-38 260.0 33.0 238 40-289 93-340 (340)
28 1sq9_A Antiviral protein SKI8; 100.0 2.5E-33 8.5E-38 264.5 33.6 247 38-296 10-326 (397)
29 3i2n_A WD repeat-containing pr 100.0 1.5E-33 5.2E-38 261.7 30.4 303 40-389 14-353 (357)
30 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-33 8.1E-38 262.0 30.7 240 41-292 5-274 (372)
31 2pm7_B Protein transport prote 100.0 2.5E-33 8.5E-38 254.5 29.4 246 40-292 5-285 (297)
32 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-32 4E-37 251.0 33.5 278 38-389 12-296 (313)
33 1erj_A Transcriptional repress 100.0 9.3E-33 3.2E-37 260.8 33.9 239 43-294 122-391 (393)
34 1r5m_A SIR4-interacting protei 100.0 4.3E-33 1.5E-37 264.6 31.6 297 41-388 105-424 (425)
35 3dm0_A Maltose-binding peripla 100.0 4.7E-33 1.6E-37 282.0 33.6 247 39-296 377-636 (694)
36 2ymu_A WD-40 repeat protein; u 100.0 6.1E-32 2.1E-36 267.7 37.3 276 38-387 256-537 (577)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-32 4.2E-37 255.3 30.2 248 40-296 57-339 (345)
38 2ynn_A Coatomer subunit beta'; 100.0 2.6E-32 8.9E-37 248.6 31.3 243 39-293 50-303 (304)
39 3dwl_C Actin-related protein 2 100.0 1.9E-34 6.5E-39 270.4 17.1 239 41-292 8-281 (377)
40 3k26_A Polycomb protein EED; W 100.0 1.3E-32 4.3E-37 256.2 29.2 284 40-388 14-365 (366)
41 3bg1_A Protein SEC13 homolog; 100.0 2.5E-33 8.6E-38 256.7 23.8 245 39-292 8-293 (316)
42 3frx_A Guanine nucleotide-bind 100.0 5.8E-32 2E-36 248.0 32.7 241 39-293 60-318 (319)
43 2hes_X YDR267CP; beta-propelle 100.0 2.9E-32 9.8E-37 251.2 29.3 242 42-293 56-329 (330)
44 4e54_B DNA damage-binding prot 100.0 1.7E-33 5.7E-38 269.6 21.6 287 40-389 115-430 (435)
45 1r5m_A SIR4-interacting protei 100.0 7.9E-32 2.7E-36 255.9 32.9 279 41-389 42-361 (425)
46 4h5i_A Guanine nucleotide-exch 100.0 6.3E-32 2.1E-36 252.4 31.3 197 90-294 136-345 (365)
47 2pbi_B Guanine nucleotide-bind 100.0 6.5E-32 2.2E-36 251.3 31.0 239 40-289 102-354 (354)
48 3vl1_A 26S proteasome regulato 100.0 1.4E-32 4.8E-37 261.4 26.3 277 45-389 57-365 (420)
49 2pm9_A Protein WEB1, protein t 100.0 2.3E-33 7.9E-38 266.3 20.4 248 40-296 63-341 (416)
50 3f3f_A Nucleoporin SEH1; struc 100.0 6.9E-32 2.4E-36 248.9 28.4 247 39-296 6-341 (351)
51 3jrp_A Fusion protein of prote 100.0 9.4E-32 3.2E-36 251.6 29.4 247 39-294 6-289 (379)
52 3gre_A Serine/threonine-protei 100.0 5.2E-32 1.8E-36 259.1 28.2 247 41-298 60-365 (437)
53 3vl1_A 26S proteasome regulato 100.0 1.6E-31 5.6E-36 254.0 31.3 287 45-389 98-419 (420)
54 1gxr_A ESG1, transducin-like e 100.0 6E-31 2.1E-35 242.0 34.1 237 42-291 95-336 (337)
55 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-31 9.7E-36 273.5 35.5 283 38-389 7-302 (814)
56 2xzm_R RACK1; ribosome, transl 100.0 2.1E-31 7E-36 246.9 30.1 242 39-294 71-342 (343)
57 2j04_B YDR362CP, TAU91; beta p 100.0 3E-32 1E-36 265.0 24.9 242 43-293 132-429 (524)
58 4a11_B DNA excision repair pro 100.0 2.8E-31 9.6E-36 250.8 29.3 249 38-296 37-369 (408)
59 3dw8_B Serine/threonine-protei 100.0 1.7E-31 5.9E-36 255.9 27.1 244 40-295 24-376 (447)
60 3v7d_B Cell division control p 100.0 3.5E-30 1.2E-34 248.4 36.3 274 39-389 116-421 (464)
61 4ggc_A P55CDC, cell division c 100.0 1.9E-30 6.4E-35 237.0 32.5 239 47-294 28-317 (318)
62 4aez_A CDC20, WD repeat-contai 100.0 4.1E-30 1.4E-34 243.3 35.4 280 41-389 88-380 (401)
63 1yfq_A Cell cycle arrest prote 100.0 3.6E-31 1.2E-35 244.5 26.6 244 40-296 7-286 (342)
64 3mmy_A MRNA export factor; mRN 100.0 2.1E-30 7.3E-35 241.2 31.6 287 36-392 31-349 (368)
65 4ery_A WD repeat-containing pr 100.0 4.4E-30 1.5E-34 234.5 33.0 241 39-291 60-311 (312)
66 3iz6_a 40S ribosomal protein R 100.0 1.7E-31 5.7E-36 251.0 23.6 247 39-294 103-377 (380)
67 2pm9_A Protein WEB1, protein t 100.0 4.6E-32 1.6E-36 257.3 19.3 280 43-390 11-338 (416)
68 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-30 2.6E-34 274.5 38.8 244 39-295 610-916 (1249)
69 1pgu_A Actin interacting prote 100.0 7.7E-30 2.6E-34 254.2 36.1 284 39-389 155-614 (615)
70 4gga_A P55CDC, cell division c 100.0 9.1E-30 3.1E-34 242.4 35.0 275 46-389 107-395 (420)
71 1pgu_A Actin interacting prote 100.0 2E-30 6.9E-35 258.4 31.5 240 40-295 14-286 (615)
72 3k26_A Polycomb protein EED; W 100.0 8.3E-31 2.8E-35 243.9 25.9 238 42-292 67-366 (366)
73 2pm7_B Protein transport prote 100.0 4.1E-30 1.4E-34 233.2 29.6 247 83-389 5-285 (297)
74 4aez_A CDC20, WD repeat-contai 100.0 6.7E-30 2.3E-34 241.9 32.0 246 41-297 131-385 (401)
75 4gga_A P55CDC, cell division c 100.0 2E-29 6.9E-34 240.0 35.0 245 40-296 143-399 (420)
76 1sq9_A Antiviral protein SKI8; 100.0 2.8E-30 9.7E-35 243.5 27.8 243 38-294 56-397 (397)
77 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-29 9.1E-34 240.3 33.9 279 40-389 129-414 (435)
78 3bg1_A Protein SEC13 homolog; 100.0 3.6E-30 1.2E-34 235.7 24.4 246 83-389 9-293 (316)
79 3v7d_B Cell division control p 100.0 3.2E-28 1.1E-32 234.6 38.3 240 39-296 157-425 (464)
80 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-28 4.3E-33 236.7 34.2 239 44-290 4-337 (450)
81 4aow_A Guanine nucleotide-bind 100.0 7.1E-29 2.4E-33 228.7 30.9 244 39-294 81-339 (340)
82 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-28 4.4E-33 255.0 35.8 201 40-254 13-248 (902)
83 2oaj_A Protein SNI1; WD40 repe 100.0 8.9E-29 3.1E-33 256.2 34.0 296 40-396 147-668 (902)
84 3ei3_B DNA damage-binding prot 100.0 3.5E-29 1.2E-33 235.2 28.2 238 41-292 115-382 (383)
85 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-28 1.2E-32 250.3 38.1 244 39-294 50-304 (814)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.2E-28 1.4E-32 232.7 35.7 276 38-389 112-391 (445)
87 3zwl_B Eukaryotic translation 100.0 2.2E-28 7.7E-33 227.6 32.7 248 39-295 69-349 (369)
88 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-28 4E-33 265.2 35.0 281 39-389 652-1074(1249)
89 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-29 1.1E-33 234.1 26.5 247 39-296 47-365 (372)
90 3dm0_A Maltose-binding peripla 100.0 5.6E-29 1.9E-33 252.1 30.4 242 39-292 425-693 (694)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-27 3.9E-32 229.6 37.0 237 38-295 153-394 (445)
92 3jro_A Fusion protein of prote 100.0 8.7E-30 3E-34 259.9 21.0 248 39-295 4-288 (753)
93 2xyi_A Probable histone-bindin 100.0 5.8E-29 2E-33 237.6 25.0 246 39-296 123-414 (430)
94 3i2n_A WD repeat-containing pr 100.0 8E-29 2.7E-33 229.8 25.2 240 41-294 62-355 (357)
95 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-29 7.7E-34 244.8 22.3 243 41-293 204-518 (524)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-28 6E-33 232.1 26.1 248 38-295 75-345 (402)
97 3jrp_A Fusion protein of prote 100.0 1.3E-27 4.4E-32 223.4 30.2 245 83-389 7-287 (379)
98 3gre_A Serine/threonine-protei 100.0 5.2E-28 1.8E-32 231.3 27.8 240 42-289 109-437 (437)
99 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-27 7.7E-32 215.9 29.7 239 39-297 54-301 (313)
100 3bws_A Protein LP49; two-domai 100.0 4.3E-27 1.5E-31 224.5 32.5 276 44-388 122-431 (433)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-28 8.2E-33 231.2 23.3 239 46-294 36-301 (402)
102 3lrv_A PRE-mRNA-splicing facto 100.0 7.8E-28 2.7E-32 222.8 25.2 228 51-294 43-294 (343)
103 3dwl_C Actin-related protein 2 100.0 3.1E-29 1.1E-33 234.9 15.9 240 86-389 10-281 (377)
104 4a11_B DNA excision repair pro 100.0 5.2E-28 1.8E-32 228.4 24.2 305 64-389 22-365 (408)
105 4e54_B DNA damage-binding prot 100.0 1.4E-28 4.7E-33 235.4 19.4 245 39-295 159-433 (435)
106 3mmy_A MRNA export factor; mRN 100.0 2E-27 6.7E-32 221.1 25.6 245 38-294 80-348 (368)
107 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-26 5.7E-31 212.7 30.0 286 83-391 7-339 (351)
108 1yfq_A Cell cycle arrest prote 100.0 2.6E-27 9E-32 218.4 24.1 230 40-284 52-315 (342)
109 2xyi_A Probable histone-bindin 100.0 9.5E-27 3.3E-31 222.2 28.4 252 85-389 126-410 (430)
110 1l0q_A Surface layer protein; 100.0 7.4E-26 2.5E-30 213.0 34.0 223 57-295 3-236 (391)
111 4h5i_A Guanine nucleotide-exch 100.0 6.9E-27 2.4E-31 218.2 26.0 279 44-389 14-343 (365)
112 1p22_A F-BOX/WD-repeat protein 100.0 8.7E-27 3E-31 222.9 26.2 235 39-296 168-418 (435)
113 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-28 8.5E-33 232.9 14.6 226 39-295 10-257 (588)
114 1l0q_A Surface layer protein; 100.0 3.2E-25 1.1E-29 208.6 34.7 238 44-296 31-279 (391)
115 3dw8_B Serine/threonine-protei 100.0 1.3E-26 4.5E-31 221.9 23.8 199 85-296 26-320 (447)
116 4gq1_A NUP37; propeller, trans 99.9 1.5E-26 5E-31 218.3 23.0 240 42-292 87-389 (393)
117 2w18_A PALB2, fancn, partner a 99.9 2.8E-25 9.6E-30 199.5 29.0 241 46-291 41-356 (356)
118 3bws_A Protein LP49; two-domai 99.9 6.5E-25 2.2E-29 209.4 32.4 237 41-291 166-431 (433)
119 3jro_A Fusion protein of prote 99.9 1.3E-26 4.5E-31 236.4 21.0 247 83-389 5-285 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.7E-25 1.6E-29 211.7 27.1 241 40-293 98-392 (450)
121 4gq1_A NUP37; propeller, trans 99.9 1.4E-24 4.9E-29 204.6 29.8 228 95-388 97-388 (393)
122 3lrv_A PRE-mRNA-splicing facto 99.9 8E-25 2.7E-29 202.5 26.8 189 94-296 43-248 (343)
123 4ggc_A P55CDC, cell division c 99.9 6.1E-24 2.1E-28 193.7 31.3 230 91-389 29-315 (318)
124 2j04_A TAU60, YPL007P, hypothe 99.9 2E-25 6.7E-30 213.0 16.5 224 39-291 47-296 (588)
125 2w18_A PALB2, fancn, partner a 99.9 2.8E-23 9.4E-28 186.6 26.3 234 89-387 41-355 (356)
126 3vu4_A KMHSV2; beta-propeller 99.9 1.2E-22 4.1E-27 188.7 29.6 233 46-296 60-340 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.8E-23 1.6E-27 195.5 24.4 245 43-295 61-347 (415)
128 1nir_A Nitrite reductase; hemo 99.9 3.6E-21 1.2E-25 188.4 30.9 231 52-293 145-403 (543)
129 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-22 1.2E-26 203.7 24.5 238 44-291 36-366 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-21 9.9E-26 183.2 29.0 226 56-294 143-389 (415)
131 3u4y_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 171.1 30.3 231 50-295 3-255 (331)
132 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.9E-24 167.0 31.9 227 57-292 5-262 (343)
133 3vgz_A Uncharacterized protein 99.9 1.2E-19 4E-24 167.8 30.8 238 42-295 38-306 (353)
134 1nir_A Nitrite reductase; hemo 99.9 6E-20 2E-24 179.8 30.0 248 43-297 220-519 (543)
135 1pby_B Quinohemoprotein amine 99.9 1.7E-20 5.9E-25 172.1 24.4 242 46-296 35-314 (337)
136 1ri6_A Putative isomerase YBHE 99.9 4.3E-20 1.5E-24 169.9 26.6 240 42-292 35-308 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.9 4E-21 1.4E-25 195.3 20.3 240 45-289 17-341 (723)
138 3u4y_A Uncharacterized protein 99.9 1.2E-19 4E-24 166.5 28.3 244 43-295 39-307 (331)
139 3o4h_A Acylamino-acid-releasin 99.9 9.8E-21 3.4E-25 187.6 22.4 230 44-290 21-274 (582)
140 2ojh_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 169.3 20.5 234 40-283 37-293 (297)
141 3hfq_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 168.0 26.4 240 43-291 38-316 (347)
142 2ojh_A Uncharacterized protein 99.9 5.3E-20 1.8E-24 165.2 22.6 215 64-294 21-260 (297)
143 1pby_B Quinohemoprotein amine 99.9 1E-19 3.5E-24 166.9 24.1 260 57-389 2-310 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-19 3.7E-24 184.3 25.9 236 45-294 82-393 (706)
145 2ecf_A Dipeptidyl peptidase IV 99.8 8.3E-20 2.8E-24 186.1 23.8 234 46-292 110-413 (741)
146 1k32_A Tricorn protease; prote 99.8 2.8E-19 9.5E-24 188.9 26.0 237 41-294 200-463 (1045)
147 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-19 4.6E-24 183.6 22.7 233 47-291 28-341 (706)
148 1jmx_B Amine dehydrogenase; ox 99.8 4E-19 1.4E-23 163.9 23.6 229 49-296 4-329 (349)
149 3hfq_A Uncharacterized protein 99.8 1.2E-17 3.9E-22 154.4 33.3 281 58-397 4-324 (347)
150 1k32_A Tricorn protease; prote 99.8 1.9E-18 6.6E-23 182.4 27.5 238 43-294 294-602 (1045)
151 3vgz_A Uncharacterized protein 99.8 1.8E-17 6.3E-22 153.0 28.6 228 45-283 89-335 (353)
152 3scy_A Hypothetical bacterial 99.8 1.7E-17 5.8E-22 154.2 28.1 239 43-292 48-337 (361)
153 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.1E-18 3.1E-22 156.4 25.7 242 43-293 38-342 (365)
154 1xfd_A DIP, dipeptidyl aminope 99.8 8.8E-18 3E-22 170.7 26.1 240 46-294 62-395 (723)
155 3pe7_A Oligogalacturonate lyas 99.8 7.9E-18 2.7E-22 157.8 23.1 245 40-295 26-332 (388)
156 1q7f_A NHL, brain tumor CG1071 99.8 3.2E-16 1.1E-20 140.6 32.7 243 40-294 25-282 (286)
157 1z68_A Fibroblast activation p 99.8 2.7E-19 9.3E-24 181.7 11.2 241 49-294 20-348 (719)
158 3scy_A Hypothetical bacterial 99.8 2.5E-16 8.7E-21 146.2 30.3 232 55-292 12-291 (361)
159 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-17 9.5E-22 151.4 22.1 228 93-389 5-325 (349)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 2.8E-16 9.7E-21 149.5 28.2 238 44-290 36-331 (434)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 4.9E-17 1.7E-21 154.8 20.9 169 114-291 23-222 (434)
162 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-17 8.2E-22 167.9 18.8 244 45-294 17-355 (740)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.4E-15 8.1E-20 140.0 27.8 227 58-291 4-290 (365)
164 3c5m_A Oligogalacturonate lyas 99.7 3E-16 1E-20 147.2 20.1 234 44-294 35-331 (396)
165 3fvz_A Peptidyl-glycine alpha- 99.7 5.9E-15 2E-19 135.3 27.6 242 43-294 22-324 (329)
166 3o4h_A Acylamino-acid-releasin 99.7 3.8E-16 1.3E-20 154.7 20.2 230 40-292 59-315 (582)
167 3pe7_A Oligogalacturonate lyas 99.7 1.6E-15 5.5E-20 142.0 21.5 248 41-293 77-383 (388)
168 2gop_A Trilobed protease; beta 99.7 2.9E-14 9.8E-19 131.4 28.7 222 44-292 14-291 (347)
169 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-13 3.9E-18 123.8 31.2 235 87-389 29-280 (286)
170 2dg1_A DRP35, lactonase; beta 99.7 2.6E-14 8.7E-19 131.0 27.0 236 45-291 6-262 (333)
171 3azo_A Aminopeptidase; POP fam 99.7 6.2E-15 2.1E-19 148.2 23.4 240 39-291 18-322 (662)
172 3e5z_A Putative gluconolactona 99.6 3E-13 1E-17 121.8 29.3 233 40-294 23-288 (296)
173 1z68_A Fibroblast activation p 99.6 9.7E-16 3.3E-20 155.6 13.7 191 92-296 20-295 (719)
174 3fvz_A Peptidyl-glycine alpha- 99.6 1.4E-13 4.9E-18 126.0 26.7 206 88-295 24-280 (329)
175 2z2n_A Virginiamycin B lyase; 99.6 9.4E-12 3.2E-16 111.6 37.1 234 42-290 12-253 (299)
176 3no2_A Uncharacterized protein 99.6 4E-13 1.4E-17 119.7 26.9 185 99-295 5-198 (276)
177 2xdw_A Prolyl endopeptidase; a 99.6 7.8E-14 2.7E-18 141.3 24.2 246 41-294 121-416 (710)
178 2dg1_A DRP35, lactonase; beta 99.6 2.1E-12 7E-17 118.3 31.2 245 41-293 41-315 (333)
179 2oiz_A Aromatic amine dehydrog 99.6 4.2E-14 1.4E-18 131.3 19.1 234 49-296 54-340 (361)
180 3dsm_A Uncharacterized protein 99.6 2.1E-12 7E-17 118.2 29.8 216 64-295 16-256 (328)
181 4a5s_A Dipeptidyl peptidase 4 99.6 2.5E-13 8.5E-18 138.3 24.6 192 90-294 19-296 (740)
182 3c5m_A Oligogalacturonate lyas 99.6 5.4E-13 1.9E-17 124.9 25.2 229 49-291 85-381 (396)
183 2gop_A Trilobed protease; beta 99.6 4E-13 1.4E-17 123.6 23.3 223 45-291 59-330 (347)
184 1rwi_B Serine/threonine-protei 99.6 3.9E-13 1.3E-17 119.1 22.1 236 46-296 25-268 (270)
185 3no2_A Uncharacterized protein 99.6 2.4E-12 8.3E-17 114.6 26.5 213 55-280 4-231 (276)
186 3dsm_A Uncharacterized protein 99.6 5.6E-12 1.9E-16 115.3 28.1 233 45-295 44-304 (328)
187 2xdw_A Prolyl endopeptidase; a 99.5 2.6E-12 8.8E-17 130.2 28.1 239 54-294 81-370 (710)
188 1qks_A Cytochrome CD1 nitrite 99.5 1.9E-11 6.5E-16 119.5 32.6 230 54-294 165-423 (567)
189 3azo_A Aminopeptidase; POP fam 99.5 3.9E-13 1.3E-17 135.0 20.9 236 49-294 81-371 (662)
190 3e5z_A Putative gluconolactona 99.5 5.8E-12 2E-16 113.3 26.5 194 85-291 25-245 (296)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.3E-12 3.2E-16 112.7 27.7 235 44-293 17-300 (314)
192 2qc5_A Streptogramin B lactona 99.5 2.5E-10 8.4E-15 102.3 36.3 232 43-290 18-258 (300)
193 2bkl_A Prolyl endopeptidase; m 99.5 2.4E-13 8.3E-18 137.4 17.5 244 41-294 117-399 (695)
194 2oiz_A Aromatic amine dehydrog 99.5 2.5E-12 8.6E-17 119.2 22.7 222 64-295 30-298 (361)
195 2bkl_A Prolyl endopeptidase; m 99.5 9.9E-13 3.4E-17 132.9 21.1 231 53-291 76-348 (695)
196 1qks_A Cytochrome CD1 nitrite 99.5 2.9E-10 9.9E-15 111.1 34.6 237 45-293 197-478 (567)
197 2mad_H Methylamine dehydrogena 99.5 1.4E-10 4.9E-15 107.7 29.5 234 49-297 70-355 (373)
198 3g4e_A Regucalcin; six bladed 99.4 1.3E-10 4.3E-15 104.7 28.1 222 43-281 11-261 (297)
199 2z2n_A Virginiamycin B lyase; 99.4 6.4E-10 2.2E-14 99.6 32.7 235 43-294 55-297 (299)
200 3hrp_A Uncharacterized protein 99.4 9.7E-11 3.3E-15 110.3 28.0 236 44-291 130-409 (409)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.1E-15 105.3 26.7 195 89-294 19-258 (314)
202 3g4e_A Regucalcin; six bladed 99.4 9.4E-10 3.2E-14 98.9 32.0 198 89-294 14-231 (297)
203 1rwi_B Serine/threonine-protei 99.4 3.3E-11 1.1E-15 106.6 21.7 194 89-293 25-223 (270)
204 1yr2_A Prolyl oligopeptidase; 99.4 2.7E-11 9.1E-16 123.3 22.1 243 42-294 160-443 (741)
205 1yr2_A Prolyl oligopeptidase; 99.4 8.9E-11 3E-15 119.4 25.7 234 53-291 115-392 (741)
206 3sjl_D Methylamine dehydrogena 99.4 1.4E-10 4.7E-15 106.8 22.7 235 49-296 82-367 (386)
207 2ghs_A AGR_C_1268P; regucalcin 99.4 2.1E-09 7E-14 98.1 30.4 218 45-282 49-292 (326)
208 2qc5_A Streptogramin B lactona 99.3 3.1E-09 1.1E-13 95.1 29.0 232 43-291 60-299 (300)
209 2ghs_A AGR_C_1268P; regucalcin 99.3 5.4E-09 1.8E-13 95.3 30.3 189 91-290 52-258 (326)
210 3c75_H MADH, methylamine dehyd 99.3 3.4E-10 1.2E-14 106.0 21.9 229 54-297 82-407 (426)
211 3iuj_A Prolyl endopeptidase; h 99.3 2.4E-10 8.2E-15 115.3 22.4 242 41-294 125-407 (693)
212 2mad_H Methylamine dehydrogena 99.3 8.6E-09 2.9E-13 95.6 31.0 232 52-295 28-310 (373)
213 2ece_A 462AA long hypothetical 99.3 4.3E-09 1.5E-13 97.6 27.7 227 54-280 93-399 (462)
214 3dr2_A Exported gluconolactona 99.3 3E-09 1E-13 95.9 25.9 232 36-289 36-303 (305)
215 2qe8_A Uncharacterized protein 99.2 7E-09 2.4E-13 95.2 26.0 236 45-283 17-312 (343)
216 3hrp_A Uncharacterized protein 99.2 2.3E-08 8E-13 94.0 28.1 193 89-294 132-356 (409)
217 1xip_A Nucleoporin NUP159; bet 99.2 8.5E-10 2.9E-14 101.9 17.4 168 46-234 39-231 (388)
218 1xip_A Nucleoporin NUP159; bet 99.1 8.2E-10 2.8E-14 102.0 15.6 172 89-280 39-232 (388)
219 3sjl_D Methylamine dehydrogena 99.1 7.6E-09 2.6E-13 95.2 21.9 230 50-296 38-324 (386)
220 1yiq_A Quinohemoprotein alcoho 99.1 1.9E-08 6.5E-13 101.0 26.5 237 56-296 121-509 (689)
221 3dr2_A Exported gluconolactona 99.1 2.5E-08 8.5E-13 89.9 24.6 193 86-291 43-266 (305)
222 3iuj_A Prolyl endopeptidase; h 99.1 3.9E-09 1.3E-13 106.5 19.7 201 86-293 127-360 (693)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.1E-07 3.8E-12 88.2 28.1 219 56-295 103-340 (376)
224 1kb0_A Quinohemoprotein alcoho 99.1 2.6E-08 8.8E-13 99.8 25.2 235 56-296 128-511 (677)
225 3hxj_A Pyrrolo-quinoline quino 99.1 7.2E-09 2.4E-13 94.2 17.9 219 46-290 61-282 (330)
226 1mda_H Methylamine dehydrogena 99.1 1.6E-08 5.6E-13 93.0 20.0 213 66-297 47-351 (368)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.9E-07 1E-11 85.4 27.4 220 56-295 53-299 (376)
228 2ece_A 462AA long hypothetical 99.0 1.8E-06 6.2E-11 80.2 30.8 191 97-293 93-353 (462)
229 2iwa_A Glutamine cyclotransfer 99.0 2.1E-06 7.1E-11 74.8 28.3 197 88-294 21-239 (266)
230 1fwx_A Nitrous oxide reductase 98.9 1.1E-07 3.6E-12 91.4 19.7 233 54-293 99-432 (595)
231 1kb0_A Quinohemoprotein alcoho 98.9 8E-07 2.7E-11 89.0 26.8 225 56-290 77-421 (677)
232 3nol_A Glutamine cyclotransfer 98.9 2E-06 6.9E-11 74.1 24.9 194 85-291 40-253 (262)
233 1npe_A Nidogen, entactin; glyc 98.9 5.7E-06 1.9E-10 72.7 28.8 217 45-274 36-263 (267)
234 1npe_A Nidogen, entactin; glyc 98.9 3.5E-06 1.2E-10 74.0 27.3 228 56-296 1-242 (267)
235 3hxj_A Pyrrolo-quinoline quino 98.9 3.5E-07 1.2E-11 82.9 21.0 219 56-295 107-327 (330)
236 1yiq_A Quinohemoprotein alcoho 98.9 1.2E-06 3.9E-11 88.1 26.4 192 56-256 70-346 (689)
237 2xzh_A Clathrin heavy chain 1; 98.8 3.4E-05 1.1E-09 68.1 31.2 257 65-389 49-332 (365)
238 2qe8_A Uncharacterized protein 98.8 4.9E-07 1.7E-11 82.8 20.3 199 88-293 17-279 (343)
239 2hz6_A Endoplasmic reticulum t 98.8 7.6E-10 2.6E-14 102.8 1.4 170 114-295 19-195 (369)
240 2fp8_A Strictosidine synthase; 98.8 4.5E-06 1.5E-10 75.6 26.5 235 46-294 20-315 (322)
241 4a2l_A BT_4663, two-component 98.8 3.3E-05 1.1E-09 79.0 35.8 236 47-294 175-438 (795)
242 2ad6_A Methanol dehydrogenase 98.8 1.2E-06 4E-11 85.9 23.5 236 56-296 115-498 (571)
243 3nok_A Glutaminyl cyclase; bet 98.8 3.9E-06 1.4E-10 72.3 23.7 179 87-280 54-253 (268)
244 3mbr_X Glutamine cyclotransfer 98.8 1.2E-05 4.2E-10 68.6 26.0 195 85-292 18-233 (243)
245 2iwa_A Glutamine cyclotransfer 98.8 1.5E-05 5.1E-10 69.4 27.0 192 46-249 22-238 (266)
246 1bpo_A Protein (clathrin); cla 98.7 8.6E-05 2.9E-09 68.1 31.7 258 64-389 47-331 (494)
247 1kv9_A Type II quinohemoprotei 98.7 2.6E-06 8.8E-11 85.2 24.3 236 56-296 117-492 (668)
248 2hz6_A Endoplasmic reticulum t 98.7 1E-08 3.4E-13 95.2 6.1 218 55-294 8-238 (369)
249 1w6s_A Methanol dehydrogenase 98.7 1.2E-05 4.1E-10 78.9 28.0 233 59-296 124-507 (599)
250 2p4o_A Hypothetical protein; p 98.7 4.5E-05 1.6E-09 68.4 28.6 227 45-283 32-279 (306)
251 3nol_A Glutamine cyclotransfer 98.6 3E-05 1E-09 66.8 24.7 181 45-237 43-245 (262)
252 3c75_H MADH, methylamine dehyd 98.6 2E-06 7E-11 80.4 18.8 99 114-213 99-217 (426)
253 4a2l_A BT_4663, two-component 98.6 0.00017 5.7E-09 73.8 34.7 236 44-294 214-482 (795)
254 3nok_A Glutaminyl cyclase; bet 98.5 3.3E-05 1.1E-09 66.6 22.2 181 45-236 55-254 (268)
255 2ad6_A Methanol dehydrogenase 98.5 2.9E-05 9.9E-10 76.1 24.8 193 55-257 62-344 (571)
256 3mbr_X Glutamine cyclotransfer 98.5 0.00011 3.8E-09 62.7 25.2 183 45-237 21-224 (243)
257 1fwx_A Nitrous oxide reductase 98.5 4.9E-05 1.7E-09 73.2 24.2 184 98-293 100-362 (595)
258 1mda_H Methylamine dehydrogena 98.5 1.7E-06 5.7E-11 79.6 13.4 210 49-271 69-366 (368)
259 1kv9_A Type II quinohemoprotei 98.5 9.6E-05 3.3E-09 73.9 26.8 191 56-256 66-341 (668)
260 2fp8_A Strictosidine synthase; 98.4 0.00014 4.8E-09 65.6 25.4 181 90-281 21-248 (322)
261 1flg_A Protein (quinoprotein e 98.4 0.00012 4E-09 71.8 26.4 56 237-296 465-520 (582)
262 3v65_B Low-density lipoprotein 98.4 0.00028 9.7E-09 65.4 27.7 233 49-296 81-322 (386)
263 3v64_C Agrin; beta propeller, 98.4 0.00049 1.7E-08 62.8 28.9 234 47-295 36-278 (349)
264 1ijq_A LDL receptor, low-densi 98.4 0.00094 3.2E-08 60.1 30.3 226 58-296 3-242 (316)
265 3v9f_A Two-component system se 98.4 0.00089 3E-08 68.3 33.3 235 45-294 211-480 (781)
266 3p5b_L Low density lipoprotein 98.4 0.0018 6.2E-08 60.3 31.2 228 57-296 84-324 (400)
267 3v9f_A Two-component system se 98.3 0.00055 1.9E-08 69.8 29.6 237 43-294 311-570 (781)
268 1w6s_A Methanol dehydrogenase 98.3 0.00016 5.4E-09 71.0 24.3 192 55-256 62-350 (599)
269 3sov_A LRP-6, low-density lipo 98.3 0.00091 3.1E-08 60.2 25.9 227 58-296 6-242 (318)
270 2p4o_A Hypothetical protein; p 98.2 0.00031 1.1E-08 62.8 22.5 190 88-291 32-241 (306)
271 4hw6_A Hypothetical protein, I 98.2 0.0014 4.8E-08 61.7 27.5 240 45-291 139-432 (433)
272 3tc9_A Hypothetical hydrolase; 98.2 0.00075 2.6E-08 63.5 25.6 238 46-291 138-429 (430)
273 1flg_A Protein (quinoprotein e 98.2 0.0015 5E-08 64.0 27.5 108 55-169 68-201 (582)
274 3p5b_L Low density lipoprotein 98.2 0.003 1E-07 58.8 28.5 205 44-257 111-329 (400)
275 3qqz_A Putative uncharacterize 98.2 0.0027 9.3E-08 54.8 26.2 195 41-246 23-251 (255)
276 3amr_A 3-phytase; beta-propell 98.2 0.0012 4E-08 59.4 23.5 174 114-291 50-262 (355)
277 2xe4_A Oligopeptidase B; hydro 98.1 0.00018 6.3E-09 72.9 20.0 245 41-294 169-460 (751)
278 3m0c_C LDL receptor, low-densi 98.1 0.0053 1.8E-07 62.1 30.1 228 58-296 397-636 (791)
279 1ijq_A LDL receptor, low-densi 98.1 0.002 6.8E-08 57.9 24.5 174 114-292 10-195 (316)
280 3v65_B Low-density lipoprotein 98.1 0.0019 6.5E-08 59.8 24.9 202 45-257 116-327 (386)
281 1k3i_A Galactose oxidase precu 98.1 0.00026 9E-09 70.6 20.3 238 49-294 190-499 (656)
282 3v64_C Agrin; beta propeller, 98.1 0.0036 1.2E-07 57.1 26.3 201 45-256 73-283 (349)
283 2xbg_A YCF48-like protein; pho 98.1 0.0059 2E-07 55.1 28.9 225 44-285 35-272 (327)
284 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0083 2.8E-07 59.2 30.1 227 57-295 7-240 (628)
285 3kya_A Putative phosphatase; s 98.0 0.0042 1.4E-07 58.9 25.9 249 46-297 140-480 (496)
286 2xzh_A Clathrin heavy chain 1; 98.0 0.0074 2.5E-07 53.4 29.3 229 49-294 71-334 (365)
287 3qqz_A Putative uncharacterize 98.0 0.0071 2.4E-07 52.2 28.6 198 82-289 21-250 (255)
288 1k3i_A Galactose oxidase precu 97.9 0.0015 5.3E-08 65.1 22.1 233 44-281 242-530 (656)
289 3sov_A LRP-6, low-density lipo 97.9 0.0066 2.2E-07 54.5 24.1 202 46-257 36-247 (318)
290 1bpo_A Protein (clathrin); cla 97.8 0.02 7E-07 52.7 28.8 231 49-294 70-333 (494)
291 1xi4_A Clathrin heavy chain; a 97.8 0.0014 4.9E-08 68.8 19.6 221 64-296 47-293 (1630)
292 3m0c_C LDL receptor, low-densi 97.7 0.036 1.2E-06 56.1 27.7 204 44-257 423-641 (791)
293 3tc9_A Hypothetical hydrolase; 97.7 0.0074 2.5E-07 56.7 21.2 152 135-292 138-301 (430)
294 2p9w_A MAL S 1 allergenic prot 97.7 0.0094 3.2E-07 53.1 20.2 152 90-249 15-216 (334)
295 2xe4_A Oligopeptidase B; hydro 97.6 0.0017 5.7E-08 65.9 17.2 198 89-290 175-396 (751)
296 1n7d_A LDL receptor, low-densi 97.6 0.00031 1.1E-08 70.4 10.6 226 59-297 380-619 (699)
297 4a0p_A LRP6, LRP-6, low-densit 97.6 0.078 2.7E-06 52.3 28.2 200 45-256 37-245 (628)
298 4hw6_A Hypothetical protein, I 97.4 0.0072 2.5E-07 56.8 16.9 152 135-292 140-304 (433)
299 3s94_A LRP-6, low-density lipo 97.4 0.069 2.4E-06 52.6 24.5 227 58-296 11-247 (619)
300 1n7d_A LDL receptor, low-densi 97.4 0.00051 1.8E-08 68.9 9.1 203 45-257 406-623 (699)
301 2xbg_A YCF48-like protein; pho 97.3 0.041 1.4E-06 49.5 20.7 190 44-245 121-319 (327)
302 2ism_A Putative oxidoreductase 97.2 0.12 4.1E-06 46.9 24.0 103 45-149 31-150 (352)
303 3sre_A PON1, serum paraoxonase 97.2 0.13 4.4E-06 46.6 22.7 187 90-283 52-288 (355)
304 2p9w_A MAL S 1 allergenic prot 97.1 0.026 8.9E-07 50.3 16.4 157 134-292 13-215 (334)
305 3kya_A Putative phosphatase; s 97.1 0.033 1.1E-06 52.8 17.9 155 135-292 140-341 (496)
306 3s94_A LRP-6, low-density lipo 97.0 0.31 1E-05 48.0 28.0 223 58-293 319-552 (619)
307 3ott_A Two-component system se 97.0 0.36 1.2E-05 48.7 31.4 231 44-293 21-261 (758)
308 3amr_A 3-phytase; beta-propell 97.0 0.19 6.4E-06 45.2 22.7 186 55-256 39-272 (355)
309 3pbp_A Nucleoporin NUP82; beta 97.0 0.072 2.5E-06 49.0 18.1 137 148-288 37-208 (452)
310 3sre_A PON1, serum paraoxonase 96.8 0.29 1E-05 44.3 21.9 202 46-256 51-308 (355)
311 3pbp_A Nucleoporin NUP82; beta 96.7 0.21 7E-06 46.0 18.9 98 195-294 39-160 (452)
312 3das_A Putative oxidoreductase 96.7 0.34 1.2E-05 43.7 26.9 225 43-280 30-326 (347)
313 3a9g_A Putative uncharacterize 96.7 0.36 1.2E-05 43.7 25.4 228 45-280 29-330 (354)
314 1xi4_A Clathrin heavy chain; a 96.5 0.11 3.6E-06 55.2 17.2 231 50-295 71-334 (1630)
315 2be1_A Serine/threonine-protei 96.4 0.044 1.5E-06 49.3 12.3 108 58-171 12-140 (339)
316 2xn4_A Kelch-like protein 2; s 96.3 0.54 1.9E-05 41.2 23.0 228 56-294 16-278 (302)
317 3ei3_A DNA damage-binding prot 96.2 1.6 5.5E-05 46.2 37.6 234 44-291 553-872 (1158)
318 2vpj_A Kelch-like protein 12; 96.1 0.63 2.1E-05 40.7 23.9 230 55-294 14-280 (301)
319 2g8s_A Glucose/sorbosone dehyd 96.0 0.84 2.9E-05 41.2 26.5 238 46-291 19-351 (353)
320 3ott_A Two-component system se 95.9 1.6 5.5E-05 43.9 31.2 235 44-294 323-588 (758)
321 3ei3_A DNA damage-binding prot 95.8 2.5 8.4E-05 44.8 31.3 169 112-290 862-1060(1158)
322 2ism_A Putative oxidoreductase 95.4 1.4 5E-05 39.6 26.5 66 89-162 32-115 (352)
323 3ii7_A Kelch-like protein 7; p 95.4 1.3 4.3E-05 38.9 24.6 227 56-294 12-274 (306)
324 1zgk_A Kelch-like ECH-associat 95.3 1.3 4.6E-05 38.8 21.7 231 54-294 23-289 (308)
325 3s25_A Hypothetical 7-bladed b 95.0 1.7 5.7E-05 38.3 17.1 158 114-292 88-255 (302)
326 3a9g_A Putative uncharacterize 94.8 2.2 7.4E-05 38.5 26.7 193 88-293 29-297 (354)
327 1cru_A Protein (soluble quinop 94.4 3.4 0.00012 38.7 18.7 100 89-194 28-163 (454)
328 1tl2_A L10, protein (tachylect 93.9 2.4 8.3E-05 35.3 17.1 148 134-294 41-210 (236)
329 3sbq_A Nitrous-oxide reductase 93.7 2.1 7.3E-05 40.8 15.1 99 45-149 323-450 (638)
330 1tl2_A L10, protein (tachylect 93.7 0.38 1.3E-05 40.1 9.0 67 217-289 41-113 (236)
331 1cru_A Protein (soluble quinop 93.6 4.8 0.00016 37.7 25.8 105 45-149 27-159 (454)
332 2uvk_A YJHT; unknown function, 93.2 4.5 0.00015 36.2 18.5 52 241-296 287-346 (357)
333 2vpj_A Kelch-like protein 12; 93.0 4.1 0.00014 35.3 22.1 188 55-250 62-280 (301)
334 3s25_A Hypothetical 7-bladed b 92.2 5.6 0.00019 34.9 20.3 124 152-293 88-217 (302)
335 3ii7_A Kelch-like protein 7; p 91.3 6.7 0.00023 34.0 21.2 188 55-250 55-274 (306)
336 3das_A Putative oxidoreductase 91.3 7.8 0.00027 34.7 19.9 68 89-161 33-116 (347)
337 4asc_A Kelch repeat and BTB do 90.9 7.7 0.00026 33.9 23.4 227 59-294 8-279 (315)
338 2be1_A Serine/threonine-protei 90.7 0.82 2.8E-05 41.0 8.2 112 145-258 11-140 (339)
339 3sbq_A Nitrous-oxide reductase 90.5 13 0.00043 35.7 22.5 97 179-280 327-453 (638)
340 1zgk_A Kelch-like ECH-associat 89.8 9.5 0.00033 33.2 17.6 189 55-251 70-290 (308)
341 2xn4_A Kelch-like protein 2; s 86.8 14 0.00049 31.8 19.8 188 55-250 61-278 (302)
342 2zwa_A Leucine carboxyl methyl 86.8 26 0.0009 34.7 22.3 197 54-252 396-639 (695)
343 3q6k_A 43.2 kDa salivary prote 85.6 21 0.00071 32.4 23.0 164 114-279 123-341 (381)
344 2g8s_A Glucose/sorbosone dehyd 85.1 21 0.0007 31.9 23.5 49 89-144 19-76 (353)
345 2zwa_A Leucine carboxyl methyl 83.2 38 0.0013 33.5 19.1 177 114-294 412-637 (695)
346 3zwu_A Alkaline phosphatase PH 78.7 9 0.00031 37.1 9.3 59 219-279 478-548 (592)
347 2woz_A Kelch repeat and BTB do 78.5 33 0.0011 29.8 22.0 228 58-294 18-289 (318)
348 4a9v_A PHOX; hydrolase, beta-p 75.5 17 0.0006 34.8 10.1 60 218-279 477-548 (592)
349 4gq2_M Nucleoporin NUP120; bet 71.2 25 0.00084 36.4 10.9 75 218-293 237-318 (950)
350 2wg3_C Hedgehog-interacting pr 71.1 67 0.0023 29.9 14.8 55 217-272 14-79 (463)
351 4asc_A Kelch repeat and BTB do 69.3 55 0.0019 28.2 19.6 51 114-164 117-177 (315)
352 2wg3_C Hedgehog-interacting pr 66.5 84 0.0029 29.3 14.8 104 176-282 15-159 (463)
353 3qhy_B Beta-lactamase inhibito 62.8 73 0.0025 27.2 14.9 220 46-292 25-246 (282)
354 2uvk_A YJHT; unknown function, 61.9 83 0.0028 27.6 19.4 46 114-159 168-224 (357)
355 4gz8_A Semaphorin-3A; multi-do 58.9 71 0.0024 31.4 10.8 70 218-287 413-495 (667)
356 3f7f_A Nucleoporin NUP120; nuc 58.2 67 0.0023 31.8 10.5 73 218-294 223-307 (729)
357 4gq2_M Nucleoporin NUP120; bet 56.2 78 0.0027 32.7 11.3 40 44-83 235-275 (950)
358 4fhn_B Nucleoporin NUP120; pro 53.6 18 0.00063 38.2 6.3 35 263-297 239-273 (1139)
359 3q6k_A 43.2 kDa salivary prote 51.5 1.4E+02 0.0047 27.0 22.5 83 43-130 85-197 (381)
360 4fhn_B Nucleoporin NUP120; pro 43.2 21 0.0007 37.9 4.7 38 218-256 239-276 (1139)
361 1q47_A Semaphorin 3A; beta pro 40.1 59 0.002 30.6 6.8 70 218-287 405-487 (495)
362 2woz_A Kelch repeat and BTB do 36.6 2E+02 0.0068 24.5 16.9 109 55-164 109-234 (318)
363 3f7f_A Nucleoporin NUP120; nuc 35.7 1.7E+02 0.0059 28.9 9.4 37 45-83 222-259 (729)
364 4hvt_A Ritya.17583.B, post-pro 34.3 3.5E+02 0.012 26.7 17.7 177 114-294 156-383 (711)
365 1zvt_A Topoisomerase IV subuni 34.1 1.9E+02 0.0063 24.3 8.5 32 262-293 84-115 (256)
366 4hvt_A Ritya.17583.B, post-pro 29.6 4.2E+02 0.014 26.1 22.8 238 46-291 130-429 (711)
367 3al9_A Plexin-A2; beta-propell 29.5 1.3E+02 0.0046 28.6 7.4 68 218-286 401-475 (539)
368 1olz_A Semaphorin 4D; developm 28.5 4.3E+02 0.015 25.9 11.3 70 218-287 398-477 (663)
369 3elq_A Arylsulfate sulfotransf 24.6 4.7E+02 0.016 25.0 12.3 76 176-256 208-300 (571)
370 3nvq_A Semaphorin-7A; beta-pro 23.8 2E+02 0.0068 27.7 7.4 58 230-287 382-444 (590)
371 3qhy_B Beta-lactamase inhibito 20.3 3.9E+02 0.013 22.5 15.6 181 46-248 64-246 (282)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=302.63 Aligned_cols=284 Identities=14% Similarity=0.222 Sum_probs=244.6
Q ss_pred ccCCCCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
....+|.+.|++++|+|+ +.+|++|+ |+.|+||++..........+.+|...+.++.+++++..+++++.|
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D---- 101 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD---- 101 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence 346789999999999975 67899999 999999999876655555677899999999999999999999988
Q ss_pred CCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+.|++||+.+++.+..+. +...+.+++|+|++.+++ .++.|++||+++++....+..+.. .+.++.++|++.+
T Consensus 102 -~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~ 178 (321)
T 3ow8_A 102 -AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKY 178 (321)
T ss_dssp -SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSE
T ss_pred -CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCE
Confidence 999999999999998887 778899999999999888 689999999999998888877766 4566777778888
Q ss_pred EEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
|++ |+.|+.|++|+.. ++.+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++.+..+.+ |...|.++
T Consensus 179 las-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~ 254 (321)
T 3ow8_A 179 LAS-GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLNV 254 (321)
T ss_dssp EEE-EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred EEE-EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEEE
Confidence 876 6789999999875 4567788899999999999999999999999999 99999999999989888 88899999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (415)
+|+|++++|++++.|++|+|||++++++..
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------------------------------- 284 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------------------------------- 284 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEE--------------------------------------------------
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCEEEE--------------------------------------------------
Confidence 999999999999999999999998876432
Q ss_pred cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
++.-....+..++|+++ ..|++++.||.|++|+++
T Consensus 285 ------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 ------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ------EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 12222345677899998 788888999999999864
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-39 Score=308.11 Aligned_cols=281 Identities=12% Similarity=0.171 Sum_probs=244.5
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|..+|++++|+|++.+|++|+ |+.|+|||+.+.+.... +.+|...+.++.|++++.++++++.| +.|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC-----CeE
Confidence 34578999999999999999999999 99999999998665443 45788899999999999999999988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++||+.+++++..+. |...|.+++|+|++.+++ .|+.|++||+.+++++..+..|.. .+..+.+++++.++++
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~g~~l~s- 251 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIAS- 251 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEE-
T ss_pred EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--cEEEEEECCCCCEEEE-
Confidence 999999999988887 899999999999998777 699999999999999999988877 4556667777778876
Q ss_pred CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC--------------------CCEEEEEeCCCcEEEEEECCCCcE
Q 014977 193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------------------GLLLATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------------------g~~l~s~s~dg~~I~vwd~~~~~~ 251 (415)
|+.|+.|++|+... .....+..|...|.+++|+|+ |.+|++|+.|+. |++||++++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~ 330 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMC 330 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCce
Confidence 67899999998764 556778899999999999996 679999999999 99999999999
Q ss_pred EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977 252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP 331 (415)
Q Consensus 252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (415)
+..+.+ |...|.+++|+|+|++|++++.||+|++||+.+++...
T Consensus 331 ~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~---------------------------------- 374 (410)
T 1vyh_C 331 LMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---------------------------------- 374 (410)
T ss_dssp EEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------------
T ss_pred EEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----------------------------------
Confidence 999988 88899999999999999999999999999997766432
Q ss_pred CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
.+......+..++|+++ ..|++++.||.|++|++
T Consensus 375 ----------------------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 375 ----------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ----------------------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 23333456778899998 67888888999999975
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-38 Score=292.37 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=237.8
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|++++|+|++++|++|+ |+.|+|||+.+....... ..+...+.++.|+|++.++++++.| +.|
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v 121 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLD-----NIC 121 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECSSSCEEEEEECTTSSEEEEEETT-----CEE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe--ecCCccEEEEEECCCCCEEEEEeCC-----CeE
Confidence 45679999999999999999999999 999999999886665543 3677789999999999999999988 999
Q ss_pred EEEECCCCC----EEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977 117 IIWDDHQSR----CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 117 ~vwd~~~~~----~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
++|++.+++ ....+. |...|.++.|++++.++. .|+.|++||+.+++.+..+..|.. .+.++.++|++.++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l 199 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC--ceEEEEECCCCCEE
Confidence 999988753 444455 889999999999988766 699999999999999999988887 45556666677777
Q ss_pred EEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977 190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (415)
++ |+.|+.|++|+... ..+..+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+....+...|.+++
T Consensus 200 ~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 200 VS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEE
Confidence 76 67899999999754 567788999999999999999999999999999 9999999998887776433445799999
Q ss_pred eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (415)
Q Consensus 269 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (415)
|+|+|++|++|+.||.|++||+.+++...
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--------------------------------------------------- 306 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAG--------------------------------------------------- 306 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEE---------------------------------------------------
T ss_pred ECCCCCEEEEECCCCeEEEEEcccCcEee---------------------------------------------------
Confidence 99999999999999999999998765321
Q ss_pred ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
.+.-....+..++|+++ ..|++++.||.|++|+
T Consensus 307 -----~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 -----VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23333456778899998 5688888899999994
No 4
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-37 Score=290.62 Aligned_cols=305 Identities=29% Similarity=0.394 Sum_probs=244.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
....|...|++++|+|||++||+|++..++||++++........+ +...+..+.+..+..++++++ + +.|++
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-d-----~~v~i 85 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV-K-----EVVHI 85 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS-T-----TEEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC-c-----cEEEE
Confidence 357899999999999999999999977789999998766555443 345566666666555555444 4 89999
Q ss_pred EECCCCCEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEe-CCcc
Q 014977 119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQR 196 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~d 196 (415)
||+.+++.+..+.+...|.++.++++...++.++.|++||+.++ +.+..+.. +..++++++ .+++++ |+.+
T Consensus 86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~~~ 158 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEFNL 158 (355)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESSCT
T ss_pred EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCCcC
Confidence 99999999999999899999999999988889999999999988 77776665 345666766 356665 8899
Q ss_pred CeEEEEEcCCcc-----------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977 197 GQVRIEHFGLNM-----------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 197 g~v~i~~~~~~~-----------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (415)
|.|++|+..... +..+.+|...|.+++|+|+|++|++++.|+..|+|||+++++.+..+..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~ 238 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL 238 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 999999987643 788899999999999999999999999999339999999999999998444
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
|...|.+++|+|++++|++++.|++|+|||++.+.... ...+..+
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~----------------------------------~~~~~~~- 283 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK----------------------------------RHALKGW- 283 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC----------------------------------SEETTTT-
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc----------------------------------cccccce-
Confidence 77899999999999999999999999999998765321 1111111
Q ss_pred cccCcccccccceEEEEeCCCc---eEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCc
Q 014977 340 GVLPKYFSSEWSFAQFHIPEVT---HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGE 394 (415)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~ 394 (415)
++|.++...|.++.+.++... ...++|+++ +.|++++.||.+++|.+...+.++
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 284 -INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp -EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred -eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 577889999999999988644 377899999 567777789999999998754443
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-38 Score=286.12 Aligned_cols=246 Identities=13% Similarity=0.172 Sum_probs=209.5
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|++++|+|++++|++|+ |+.|+|||+++...... +..+...+.++.|++++..+++++.| +.|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~d-----~~i 79 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD-----FRI 79 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT-----SEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE--eeccCCcEEEEEEeCCCCEEEEECCC-----CEE
Confidence 34578999999999999999999999 99999999998665443 44677889999999999999999988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCC-CceEEE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHS-STSVLA 190 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 190 (415)
++||+.+++.+..+. |...|.+++|+|++.+++ .|++|++||++++ .....+.+|...+ .++.++| ++.+++
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV--MCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE--EEEEECTTCTTEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE--EEEEECCCCCCEEE
Confidence 999999999999988 899999999999998887 6999999999876 4556677787744 4555554 345665
Q ss_pred EeCCccCeEEEEEcCC-cceEEE-ecCccceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 191 CPGLQRGQVRIEHFGL-NMIKLI-NAHDSHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~~~~~-~~~~~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
+ |+.|++|++|+... .....+ ..|...+..+.|+| ++.+|++++.|+. |++||+++++++..+.+ |...|.+
T Consensus 158 s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~ 233 (304)
T 2ynn_A 158 S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF 233 (304)
T ss_dssp E-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred E-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEE
Confidence 5 77999999999754 333333 45668899999986 7789999999999 99999999999999998 8889999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
++|+|++++|++++.||+|++||+++++..
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 999999999999999999999999887643
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-38 Score=292.14 Aligned_cols=285 Identities=8% Similarity=0.041 Sum_probs=239.6
Q ss_pred CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.....+|.+.|++++|+|++++|++|+ |+.|+|||..+........ .+...+.++.|+|++..+++++.| +.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~lasg~~d-----~~ 129 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIACGGLD-----NK 129 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEEESTT-----SE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe--cCCCCEEEEEECCCCCEEEEeeCC-----CC
Confidence 345679999999999999999999999 9999999998766554433 566778899999999999999998 99
Q ss_pred EEEEECCCC------CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 116 VIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 116 i~vwd~~~~------~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
+++|++... .....+. |...|.++.|+|++..++ .|++|++||+++++.+..+.+|...+..++++++++
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999997643 2233444 899999999999987766 699999999999999999999988777778888777
Q ss_pred ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977 186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
+.++++ |+.||.|++|+.+ ++.+..+..|...|.+++|+|++.+|++++.|+. |++||+++++.+..+....+...+
T Consensus 210 g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 210 GNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp CCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccce
Confidence 777776 6789999999865 4667788899999999999999999999999999 999999998887777654344578
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (415)
.+++|+|++++|++++.|++|++||+.+++...
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------------------------------- 320 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS----------------------------------------------- 320 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-----------------------------------------------
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-----------------------------------------------
Confidence 999999999999999999999999998776321
Q ss_pred ccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
.+.-..+.+..++|+|+ ..|++++.||.|++|.
T Consensus 321 ---------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ---------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ---------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ---------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 11222356677899999 6788888899999994
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=286.35 Aligned_cols=280 Identities=12% Similarity=0.083 Sum_probs=214.8
Q ss_pred CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccC----------CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (415)
..|...|.+++|+|||++|++++|+++++||... ........ ..+...+.++.|++++.++ +++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~l~-~~s~d-- 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGERGIL-VASDS-- 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETTTEEE-EEETT--
T ss_pred ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCCCeEE-EEECC--
Confidence 4577889999999999999998888888887421 00000001 1334568999999997655 55655
Q ss_pred CCCCeEEEEECCCCCEEEEEE-----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977 111 YPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
|.|+|||+.+++.+.... |...|++++|+|++.+++ .|+.|++||+.+++++..+.+|...+..+++++
T Consensus 103 ---g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 103 ---GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp ---SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred ---CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 999999999987654432 789999999999999888 699999999999999999999988555555554
Q ss_pred CCCceEEEEeCCccCeEEEEEcCC-cceEEE--ecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKLI--NAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~--~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
+... +++ +++.|++|++|+... +....+ ..|...+.+++|+|+ +++|++|+.|+. |+|||+++++++..+.+
T Consensus 180 ~~~~-~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~- 255 (344)
T 4gqb_B 180 HKDS-VFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV- 255 (344)
T ss_dssp SCTT-EEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC-
T ss_pred CCCC-cee-eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC-
Confidence 4332 444 477899999998765 444444 345667899999985 578999999999 99999999999999998
Q ss_pred CCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977 259 VDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF 337 (415)
Q Consensus 259 ~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (415)
|...|++++|+|++ ++|++++.|++|+|||+++++..
T Consensus 256 -h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----------------------------------------- 293 (344)
T 4gqb_B 256 -HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----------------------------------------- 293 (344)
T ss_dssp -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-----------------------------------------
T ss_pred -CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-----------------------------------------
Confidence 88899999999998 58999999999999999877532
Q ss_pred cccccCcccccccceEEEEeCCCceEEEEecCC-CE-EEEEEeCCcEEEEEEec
Q 014977 338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT-VVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-i~~~~~dg~~~~~~~~~ 389 (415)
.+.-..+.+..++|+|+ .. +++++.||.|++|.++.
T Consensus 294 ----------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 294 ----------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ----------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ----------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 11112356677899998 34 45677799999999975
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=281.13 Aligned_cols=294 Identities=15% Similarity=0.169 Sum_probs=229.5
Q ss_pred cCCCCCC-ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE-eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEI-ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR-DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~-~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
...+|.. .|++++|+|+|++||+|+ |+.|+||++++....... ...+|...+.++.|+|++.+|++++.| +.
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~ 84 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----AT 84 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----Cc
Confidence 3567887 999999999999999999 999999999876543332 234788899999999999999999988 99
Q ss_pred EEEEECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEeccCCCcceEEEecCCCc
Q 014977 116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
|++||+.++. ++..+. |...|.+++|+|++.+++ .|+.|++||+.+++ .+..+..|.. .+.++.++|++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~ 162 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQ 162 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCC
Confidence 9999988774 455665 899999999999998888 69999999997653 4555666766 45556666667
Q ss_pred eEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--------------
Q 014977 187 SVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------------- 249 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------------- 249 (415)
.+|++ |+.|+.|++|+.... ....+.+|...|.+++|+|+|++|++++.|+. |+|||....
T Consensus 163 ~~l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 163 ELLAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SCEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CE
T ss_pred CEEEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCc
Confidence 77776 678999999987653 34678899999999999999999999999999 999996321
Q ss_pred -cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977 250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG 328 (415)
Q Consensus 250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (415)
+++..+.+. |...|.+++|+|++..|++++.|+.|++|+++.+.....
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------------------------ 289 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ------------------------------ 289 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS------------------------------
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce------------------------------
Confidence 233444432 677899999999999999999999999999886653210
Q ss_pred CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977 329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~ 389 (415)
..+.... .........+..++|+|+ ..|++++.||.|++|++..
T Consensus 290 ----~~~~~~~-------------~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 290 ----PTFSLTA-------------HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp ----CCEEEEE-------------EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred ----eeEEEEe-------------eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 0000000 000112356778999997 4688888899999999976
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-36 Score=274.12 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=231.9
Q ss_pred cCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
...+|.+.|++++|+|++ ++|++|+ |+.|++|++...... ....+.+|...+.++.|++++.++++++.|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D----- 86 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD----- 86 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC-----
Confidence 467999999999999965 8999999 999999998643221 223456888999999999999999999988
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC----C
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS----S 185 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 185 (415)
+.|++||+.+++.+..+. |...|.+++|+|++.+++ .|+.|++||++ ++.+..+.+|...+..+.+.+.. +
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 999999999999999888 999999999999998887 69999999986 46677777887755555555532 2
Q ss_pred ceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977 186 TSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
+..+++ ++.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |+|||+.+++.+..+.. ...|
T Consensus 166 ~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~~v 240 (319)
T 3frx_A 166 SVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QDEV 240 (319)
T ss_dssp CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CSCE
T ss_pred ccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCcE
Confidence 335554 67899999999865 456678899999999999999999999999999 99999999999988874 4579
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (415)
.+++|+|++.+|++++.++ +++|+++.+........+ + ..
T Consensus 241 ~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~--------------------------------------~-~~ 280 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPE--------------------------------------F-AG 280 (319)
T ss_dssp EEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCC--------------------------------------C-TT
T ss_pred EEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCcc--------------------------------------c-cc
Confidence 9999999999999888665 999999876532111000 0 00
Q ss_pred ccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+ .+........++|+|+ ..|++++.||.|++|++.-
T Consensus 281 ~---------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 Y---------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp C---------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred c---------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0 0001134456899999 6777888899999999864
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-35 Score=274.22 Aligned_cols=293 Identities=15% Similarity=0.204 Sum_probs=224.8
Q ss_pred ccCCCCCCceEEEEE-----eC-CCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEec
Q 014977 38 AFSDVDEIELISVSW-----NQ-DYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGA 105 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~-----sp-~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 105 (415)
....+|.+.|++++| ++ ++++|++|+ |+.|+||++...+ ......+.+|...+.++.|++++.+++++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 346789999999999 76 999999999 9999999997532 12233456888899999999999999999
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe---ccCCCcceE
Q 014977 106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---TLANLRGLC 178 (415)
Q Consensus 106 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~ 178 (415)
+.| +.|++||+.+++.+..+. |...|.+++|+|++..++ .|+.|++||+.... ..... .|.. .+.
T Consensus 95 s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~--~v~ 166 (343)
T 2xzm_R 95 SWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSD--WVS 166 (343)
T ss_dssp ETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSS--CEE
T ss_pred cCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCc--eee
Confidence 988 999999999999999888 999999999999998877 69999999997433 22222 3444 344
Q ss_pred EEecCCCc----------eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-
Q 014977 179 CLSHHSST----------SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV- 247 (415)
Q Consensus 179 ~~~~~~~~----------~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~- 247 (415)
++.++|++ .++++ ++.|+.|++|+........+.+|...|.+++|+|+|++|++++.|+. |++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence 44444443 46665 67899999999888888889999999999999999999999999999 9999994
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC--CCCCCCCCCCcccccccCCCCCcccCCC
Q 014977 248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE--DSSSSLSTPSQSTELLNHSSSFDTLISP 325 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (415)
.......+. +...|.+++|+|++++|++++ |+.|++|++.+++... .+...
T Consensus 245 ~~~~~~~~~---~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~----------------------- 297 (343)
T 2xzm_R 245 LTYPQREFD---AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAE----------------------- 297 (343)
T ss_dssp CSSCSEEEE---CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCC-----------------------
T ss_pred Ccccceeec---CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecC-----------------------
Confidence 444444454 344699999999999887654 7779999998776431 00000
Q ss_pred CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.+.+.. ..+-.......++|+|+ ..|++++.||.|++|.++.
T Consensus 298 ---------------~~~~~~-------~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 298 ---------------PITKAE-------GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ---------------SGGGBT-------TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ---------------cchhhh-------hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 000000 00001234567899998 7788888899999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-37 Score=288.43 Aligned_cols=282 Identities=12% Similarity=0.108 Sum_probs=213.5
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-------CCcEEEEEccCCceeE--EEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETF--RRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-------d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (415)
...|+..|++++|+|||++||+|+ |+.+++|+..+..... ......+...+.+++|++++.+++++. |
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~-d-- 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASD-S-- 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEET-T--
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEEC-C--
Confidence 457999999999999999999998 3567888775432211 111125677899999999998777654 4
Q ss_pred CCCCeEEEEECCCCCEEEE-----EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977 111 YPPTKVIIWDDHQSRCIGE-----FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~-----~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
+.|++||+.+++.... ..|...|.+++|+|++.+++ .|+.|++||+.+++.+..+..|...+..+++++
T Consensus 115 ---g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 115 ---GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp ---SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ---CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 9999999988765432 23789999999999998887 699999999999999999998888666555555
Q ss_pred CCCceEEEEeCCccCeEEEEEcCC-cceEE--EecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKL--INAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~--~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
+.+. +++ +++.|+.|++|+... +.... +..|...+.+++|+|+ +.+|++|+.|+. |++||+++++.+..+..
T Consensus 192 ~~~~-~~~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~- 267 (357)
T 4g56_B 192 GKDT-IFL-SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV- 267 (357)
T ss_dssp TCSS-CEE-EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC-
T ss_pred CCCc-eee-eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec-
Confidence 5443 334 466899999998764 33333 3456778999999997 468999999999 99999999999989887
Q ss_pred CCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977 259 VDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF 337 (415)
Q Consensus 259 ~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (415)
|...|++++|+|++ ++|++++.|++|+|||+++++.....
T Consensus 268 -~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-------------------------------------- 308 (357)
T 4g56_B 268 -HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-------------------------------------- 308 (357)
T ss_dssp -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--------------------------------------
T ss_pred -cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--------------------------------------
Confidence 78899999999987 58999999999999999887643110
Q ss_pred cccccCcccccccceEEEEeCCCceEEEEecC-C-CEEEEEEeCCcEEEEEEec
Q 014977 338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS-Q-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~dg~~~~~~~~~ 389 (415)
-..+.+..++|+| + ..|++++.||.|++|.++.
T Consensus 309 -------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 309 -------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp -------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred -------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 0124567789998 4 6788888899999999976
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-35 Score=280.71 Aligned_cols=280 Identities=13% Similarity=0.135 Sum_probs=224.7
Q ss_pred CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc----------------CCCeeEEEEeeeCCeEEEEec
Q 014977 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILALVGA 105 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~ 105 (415)
+|...|.+++|+|||++||+|+++.++||++.+++.......+ .+...+.++.|++++.+++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 5999999999999999999999999999999876654432211 122348899999999999999
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 106 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
+.| +.|++||+.+++.+..+. |...|.+++|+|++..++ .|+.|++||+++++....+..+. .+.++.
T Consensus 142 ~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~~~~ 213 (393)
T 1erj_A 142 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVA 213 (393)
T ss_dssp ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred cCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcEEEE
Confidence 988 999999999999988887 899999999999998887 69999999999998887776433 345555
Q ss_pred cCC-CceEEEEeCCccCeEEEEEcCCc-ceEEE-------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---
Q 014977 182 HHS-STSVLACPGLQRGQVRIEHFGLN-MIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--- 249 (415)
Q Consensus 182 ~~~-~~~~l~~~g~~dg~v~i~~~~~~-~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--- 249 (415)
+++ ++.++++ |+.|+.|++|+.... .+..+ .+|...|.+++|+|+|++|++++.|+. |++||+++.
T Consensus 214 ~~~~~~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~ 291 (393)
T 1erj_A 214 VSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNK 291 (393)
T ss_dssp ECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC------
T ss_pred EECCCCCEEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCc
Confidence 555 5667765 778999999987653 33344 578999999999999999999999999 999999763
Q ss_pred ---------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977 250 ---------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD 320 (415)
Q Consensus 250 ---------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (415)
.+...+.+ |...|.+++|+|++++|++++.|+.|++||+++++...
T Consensus 292 ~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------------- 346 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL----------------------- 346 (393)
T ss_dssp ---------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE-----------------------
T ss_pred ccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-----------------------
Confidence 34456666 77899999999999999999999999999998876431
Q ss_pred ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC------C-CEEEEEEeCCcEEEEEEec
Q 014977 321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS------Q-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.++-....+..++|++ + +.+++++.||.|++|++..
T Consensus 347 ---------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 347 ---------------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ---------------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ---------------------------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 2222334555666664 4 5677788899999999875
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-35 Score=268.85 Aligned_cols=283 Identities=13% Similarity=0.217 Sum_probs=230.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|.+.|++++|+|++++|++|+ |+.|+||++.+.+... .+..|...+.++.|++++..+++++.| +.|+
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~ 90 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDD-----KTLK 90 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEcCCCCEEEEECCC-----CEEE
Confidence 4578999999999999999999999 9999999998765433 345788889999999999999999988 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
+||+.+++.+..+. |...|.++.|+|++.+++ .|+.|++||+++++.+..+..|..+ +.++.+++++.++++ +
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~-~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVS-S 167 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEE-E
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCCCCEEEE-E
Confidence 99999999999888 899999999999998887 6999999999999999888888764 455556666777776 6
Q ss_pred CccCeEEEEEcCCc-ceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc-EEEEEeC
Q 014977 194 LQRGQVRIEHFGLN-MIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALS 270 (415)
Q Consensus 194 ~~dg~v~i~~~~~~-~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~s 270 (415)
+.|+.|++|+.... .+..+ ..+...+..++|+|++++|++++.|+. |++||+++++.+..+..+..... +......
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 78999999997653 44444 346678999999999999999999999 99999999999988887322222 2223334
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
+++.+|++++.||.|++||+++++...
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------------------------------------------- 273 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQ----------------------------------------------------- 273 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEE-----------------------------------------------------
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhh-----------------------------------------------------
Confidence 688999999999999999998776332
Q ss_pred ceEEEEeCCCceEEEEecCC-CEEEEEE--eCCcEEEEEEe
Q 014977 351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVS--MDGSFYRCSFD 388 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~--~dg~~~~~~~~ 388 (415)
.++-+...+..++|+|+ +.+++++ .||.|++|+.+
T Consensus 274 ---~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 274 ---KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 22223356677899998 5555555 49999999875
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=270.30 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=212.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|...|.+++|++++.++++++ |+.|++||+.+.+..... ..+...+..+.|+|++..+++++.+ +.|++
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~d-----g~v~i 148 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHV-----GKVNI 148 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECTT-----SEEEE
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcCC-----CcEEE
Confidence 578999999999999999999999 999999999987655443 3566677889999999999999988 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
|++.+++....+. +...|.+++|+|++.+++ .|+.|++||+.+++.+..+..|..++..+ .++|++.+|++ |+
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~spd~~~l~s-~s 225 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL--TFSPDSQLLVT-AS 225 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE--EECTTSCEEEE-EC
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE--EEcCCCCEEEE-Ec
Confidence 9999999988887 788899999999999888 69999999999999999998888755554 45556677776 77
Q ss_pred ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 195 QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 195 ~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+. |+|||+.+++++..+.. |...|.+++|+|++
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNG 302 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTS
T ss_pred CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECCCC
Confidence 899999998764 567788899999999999999999999999999 99999999999999987 88899999999999
Q ss_pred CEEEEEeCCCeEEEEEce
Q 014977 274 QWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~ 291 (415)
++|++++.||+|+|||+.
T Consensus 303 ~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCeEEEEeCC
Confidence 999999999999999963
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=269.26 Aligned_cols=283 Identities=12% Similarity=0.128 Sum_probs=238.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|.+.|++++|+|++++|++++ |+.|+||++.+.+.... +..|...+.++.|++++..+++++.| +.|+
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~ 99 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIK 99 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence 4678999999999999999999999 99999999988665443 44788899999999999999999887 9999
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC-----CeEEEEEcCCce-----------eeeEEeccCCCcceE
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDLK-----------LLHQIETLANLRGLC 178 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d-----~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~ 178 (415)
+||+.+++.+..+.+...+.+++|+|++..++ .+ +.|++||+...+ .+..+..+.....+.
T Consensus 100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred EEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 99999999999999999999999999998888 45 899999996553 233334444433566
Q ss_pred EEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
++.+++++.++++ ++.||.|++|+... ..+..+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+.
T Consensus 180 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 180 VAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeeec
Confidence 7777777878876 66899999999875 667788899999999999999999999999999 9999999999998887
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCC--------------eEEEEEceecccCCCCCCCCCCCCcccccccCCCCCccc
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKG--------------TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL 322 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (415)
+...+..++|+|+++++++++.++ .+++||+.+++..
T Consensus 258 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------- 308 (369)
T 3zwl_B 258 ---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-------------------------- 308 (369)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE--------------------------
T ss_pred ---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch--------------------------
Confidence 566899999999999999999998 7888887766532
Q ss_pred CCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
..+......+..++|+++ +.+++++.||.|++|++..
T Consensus 309 ------------------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 309 ------------------------------GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------------------hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 233334466778899998 6778888899999999975
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-35 Score=294.55 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=224.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...+|...|++++|+|+|++||+|+ |+.|+||++.+.+....... ..|...+.++.|+|++..+++++.|
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---- 260 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---- 260 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----
T ss_pred eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC----
Confidence 3568999999999999999999999 99999999987655433210 1578899999999999999999988
Q ss_pred CCeEEEEECCCCCEEEEE-------------------------------------------E-ccCceeEEEEcCCeEEE
Q 014977 113 PTKVIIWDDHQSRCIGEF-------------------------------------------A-FRSDVRSVKLSRDRIVV 148 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~-------------------------------------------~-~~~~i~~l~~~~~~~~~ 148 (415)
+.|++||+.+++.+..+ . |...|.+++|+|++.++
T Consensus 261 -~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 261 -KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp -SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 99999999887765443 2 67789999999999988
Q ss_pred E---eCCeEEEEEcCCceeeeEE-eccCC---------------------------------------------------
Q 014977 149 V---LEHKIYVYSFVDLKLLHQI-ETLAN--------------------------------------------------- 173 (415)
Q Consensus 149 ~---~d~~i~iwd~~~~~~~~~~-~~~~~--------------------------------------------------- 173 (415)
+ .|+.|++||+.+++....+ ..|..
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 8 6999999999776543221 00000
Q ss_pred ----------------------------CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE--EEecCccceEEEE
Q 014977 174 ----------------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFT 223 (415)
Q Consensus 174 ----------------------------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~--~~~~~~~~i~~l~ 223 (415)
...+.+++++|++.+|++ |+.|++|++|+....... ...+|...|.+++
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~ 498 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeeccCCCCceEEEE
Confidence 012345667788888876 678999999998764331 2267999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 224 LTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
|+|+|++|++++.|+. |++||+.+ ++.+.......|...|.+++|+|||++|++++.|++|+||+++++++..
T Consensus 499 fspdg~~las~s~d~~-v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~----- 572 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP----- 572 (611)
T ss_dssp ECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-----
T ss_pred ECCCCCEEEEEcCCCC-EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc-----
Confidence 9999999999999999 99999987 5543321112278899999999999999999999999999998765320
Q ss_pred CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC-CCceEEEEecCCCEEEEEEeCCc
Q 014977 303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP-EVTHFIAAFGSQNTVVIVSMDGS 381 (415)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~dg~ 381 (415)
+ ...... ...+..++|+++++|++++.||.
T Consensus 573 -----------------------------------~--------------~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~ 603 (611)
T 1nr0_A 573 -----------------------------------I--------------IIKGAHAMSSVNSVIWLNETTIVSAGQDSN 603 (611)
T ss_dssp -----------------------------------E--------------EETTSSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred -----------------------------------c--------------hhhccCcccCeeEEEEcCCCEEEEecCCCC
Confidence 0 000001 24567789999988999999999
Q ss_pred EEEEEEe
Q 014977 382 FYRCSFD 388 (415)
Q Consensus 382 ~~~~~~~ 388 (415)
|++|+++
T Consensus 604 i~lW~~~ 610 (611)
T 1nr0_A 604 IKFWNVP 610 (611)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999873
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-36 Score=285.77 Aligned_cols=289 Identities=15% Similarity=0.162 Sum_probs=228.2
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..... ..|...+.++.|+|++..+++++.| +.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~h~~~v~~~~~s~~g~~las~~~d-----~~v 132 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI--KLHCPWVMECAFAPNGQSVACGGLD-----SAC 132 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--ECCCTTCCCCEECTTSSEEEECCSS-----SCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE--ecCCCCEEEEEECCCCCEEEEeeCC-----CcE
Confidence 34679999999999999999999999 999999999887655443 3677778899999999999999998 999
Q ss_pred EEEECCCCC-------EEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEE-----eccCCCcceEE
Q 014977 117 IIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQI-----ETLANLRGLCC 179 (415)
Q Consensus 117 ~vwd~~~~~-------~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~ 179 (415)
++||+.+.. ....+. |...|.++.|.|++ ..++ .|++|++||+.+++.+..+ .+|.. .+.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--DVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS--CEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc--CeEE
Confidence 999986532 222333 78899999999864 3333 7999999999999888777 34444 4555
Q ss_pred EecCC-CceEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 180 LSHHS-STSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 180 ~~~~~-~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
+.+++ ++.++++ |+.|++|++|+.+ ...+..+.+|...|.+++|+|+|++|++++.|+. |++||+++++.+..+.
T Consensus 211 ~~~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 211 LSINSLNANMFIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEECSSSCCEEEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEEC
T ss_pred EEeecCCCCEEEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEec
Confidence 55544 4456655 7799999999975 3677889999999999999999999999999999 9999999999988876
Q ss_pred cCCC-----cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977 257 RGVD-----RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP 331 (415)
Q Consensus 257 ~~~~-----~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (415)
.... ...|.+++|+|+|++|++|+.||.|++||+.+++.....
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-------------------------------- 336 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-------------------------------- 336 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE--------------------------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE--------------------------------
Confidence 5211 124899999999999999999999999998876642100
Q ss_pred CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.... .-..+.+..++|+++ ..|++++.||.|++|.+..
T Consensus 337 -----------~~~~---------~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 337 -----------GTLQ---------NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -----------CCSC---------SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -----------eccc---------CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 0000 001245567899999 6677777799999999864
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=275.69 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=198.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE--EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.|...|.+++|+|++ .|++|+ ||.|+|||+++.+.... ..+.+|...|.++.|++++..|++++.| +.|++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence 356789999999996 456666 99999999988665433 2344788899999999999999999988 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc-eEEEEe
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLACP 192 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 192 (415)
||+.+++++..+. |...|.+++|++++. +++ .|+.|++||+++++....+..+.....+.++.+++++ .+++ +
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-s 232 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-F 232 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-E
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-E
Confidence 9999999999998 999999999999874 444 6999999999999988877554444456666666644 4554 4
Q ss_pred CCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
|+.||.|++|+.. ++.+..+.+|...|++++|+|+| ++|++|+.|+. |+|||+.+++.+ .+.+ |...|++++|+
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~--H~~~V~~v~~s 308 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQA--HRDFVRDATWS 308 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECC--CSSCEEEEEEC
T ss_pred eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcC--CCCCEEEEEEe
Confidence 7799999999865 56788899999999999999998 58999999999 999999888765 4555 88899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEEceeccc
Q 014977 271 PNVQ-WLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 271 pdg~-~l~s~s~dg~i~vwd~~~~~~ 295 (415)
|+++ +|++++.|++|++|++.+...
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9986 567999999999999987653
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=266.91 Aligned_cols=243 Identities=14% Similarity=0.206 Sum_probs=192.4
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-cC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KS-GGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.|++++|+|+ +||+|+ |+.|+||++..........+ .. |...+.++.|+|++.++++++.| +.
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~ 81 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----ST 81 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----Cc
Confidence 45689999999999998 999999 99999999986432222223 23 78889999999999999999988 99
Q ss_pred EEEEECCC-------CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEE
Q 014977 116 VIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 116 i~vwd~~~-------~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~ 180 (415)
|++||+.. .+.+..+. |...|.+++|+|++.+++ .|+.|++||+.. .+++..+..|.. .+.++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v 159 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--DVKHV 159 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--CEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--ceEEE
Confidence 99999853 34555665 899999999999999888 699999999943 245667777776 45556
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCC--CCEEEEEeCCCcEEEEEECCCC------
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLD--GLLLATASTRGTLIRIFNTVDG------ 249 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~--g~~l~s~s~dg~~I~vwd~~~~------ 249 (415)
.++|++.+|++ |+.|++|++|+... +.+..+.+|...|.+++|+|+ +.+|++++.|+. |++||+..+
T Consensus 160 ~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 160 IWHPSEALLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCE
T ss_pred EECCCCCEEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccc
Confidence 66667777776 67899999998653 467788999999999999998 779999999999 999998654
Q ss_pred --cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 250 --TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 250 --~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.....+.. .|...|.+++|++++ +|++++.||.|+||++.+++
T Consensus 238 ~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 238 EWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred eeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 23333332 267799999999765 79999999999999987653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-35 Score=278.27 Aligned_cols=243 Identities=12% Similarity=0.227 Sum_probs=214.5
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|.+++|+|++++|++|+ |+.|+|||+.+.+.. ..+.+|...+.++.|+|++..+++++.| +.|
T Consensus 144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i 216 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTI 216 (410)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETT-----SEE
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeE
Confidence 44678999999999999999999999 999999999876543 3455888899999999999999999988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC-------
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------- 185 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (415)
++||+.+++++..+. |...|.++.+++++.+++ .|+.|++||+.+++....+..|...+..++++++..
T Consensus 217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence 999999999999988 899999999999998887 699999999999999999988888666666655421
Q ss_pred -----------ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 186 -----------TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 186 -----------~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
+.++++ |+.|+.|++|+.. +..+..+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+.
T Consensus 297 ~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK 374 (410)
T ss_dssp CSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred ccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEE
Confidence 456665 7799999999965 5677888999999999999999999999999999 9999999999999
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.+.+ |...|++++|+|++.+|++|+.||+|+||+++
T Consensus 375 ~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9988 78899999999999999999999999999864
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-34 Score=282.92 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=234.4
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|...|.+++|+|++++|++++ |+.|++|+..... .. .+..+...+.++.|+|++..+++++.+ +.|
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v 368 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQ--TLTGHSSSVWGVAFSPDGQTIASASDD-----KTV 368 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eE--EEeCCCCCEEEEEECCCCCEEEEEeCC-----CEE
Confidence 34578999999999999999999999 9999999987533 22 244778889999999999999999887 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++|| .+++.+..+. |...|.+++|+|++.+++ .|+.|++||. +++.+..+..|... +.++.++|++.+|++
T Consensus 369 ~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~- 443 (577)
T 2ymu_A 369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VWGVAFSPDDQTIAS- 443 (577)
T ss_dssp EEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC--EEEEEECTTSSEEEE-
T ss_pred EEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC--eEEEEECCCCCEEEE-
Confidence 9999 5677777777 899999999999998887 6899999995 56788888888774 455666667778876
Q ss_pred CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (415)
++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+.+ |...|++++|+||
T Consensus 444 ~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~d 519 (577)
T 2ymu_A 444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD 519 (577)
T ss_dssp EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeC--CCCCEEEEEEcCC
Confidence 66899999999999999999999999999999999999999999999 999995 7889999988 8889999999999
Q ss_pred CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF 352 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (415)
|++|++++.||.|+|||.. ++..
T Consensus 520 g~~l~s~~~dg~v~lwd~~-~~~~-------------------------------------------------------- 542 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRN-GQLL-------------------------------------------------------- 542 (577)
T ss_dssp SSCEEEEETTSEEEEECTT-SCEE--------------------------------------------------------
T ss_pred CCEEEEEECcCEEEEEeCC-CCEE--------------------------------------------------------
Confidence 9999999999999999953 3211
Q ss_pred EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977 353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (415)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~ 386 (415)
..+.-+.+.+..++|+++ ..|++++.||.|++|+
T Consensus 543 ~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 233334466778899998 6788888899999994
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-33 Score=259.49 Aligned_cols=279 Identities=12% Similarity=0.105 Sum_probs=229.8
Q ss_pred CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
.+|...|.+++|+|++++|++++|+.|++|++++.+. ........+...+.++.|++++..+++++.+ +.|+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 122 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLS 122 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEE
Confidence 4799999999999999999999999999999986442 2222233678889999999999988888887 9999
Q ss_pred EEECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+||+.+++ ....+. |...|.+++|+|++.+++ .|+.|++||+.+++.+..+..|.. .+.++.+++++.++++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLWT 200 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEECCCCCEEEE
Confidence 99999887 444454 788999999999988777 689999999999999988887776 4556666667777776
Q ss_pred eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
++.|+.|++|+...........+...+.+++|+|++++|++++.++. |++||+.+++.. .+.. |...|.+++|+|
T Consensus 201 -~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~~~ 275 (337)
T 1gxr_A 201 -GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKFAY 275 (337)
T ss_dssp -EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEECT
T ss_pred -EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEECC
Confidence 66899999999876655555568889999999999999999999999 999999888764 4555 788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS 351 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (415)
++++|++++.||.|++||+++++...
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~~------------------------------------------------------ 301 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASIF------------------------------------------------------ 301 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEE------------------------------------------------------
T ss_pred CCCEEEEecCCCcEEEEECCCCeEEE------------------------------------------------------
Confidence 99999999999999999998876321
Q ss_pred eEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
.. ........+.|+++ +.+++++.||.+++|++-
T Consensus 302 --~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 302 --QS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --EE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred --Ee-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 11 12345667889998 778888889999999873
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-34 Score=288.09 Aligned_cols=290 Identities=13% Similarity=0.128 Sum_probs=230.3
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|...|++++|+|+|++||+|+ |+.|+|||+.+.+......+..|...+.++.|+|++..+++++.+.. ..+.|
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v 131 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHV 131 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEE
Confidence 44578999999999999999999999 99999999976554444455578889999999999988887765300 11467
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
++|| .++.+..+. |...|.+++|+|++. .++ .|++|++||..+++.+..+.+|.. .+.++.++|++.+|++
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~--~V~~v~fspdg~~las 207 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFAS 207 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC--ceEEEEECCCCCEEEE
Confidence 7777 555555566 899999999999975 344 699999999999999999988887 4556666667778876
Q ss_pred eCCccCeEEEEEcC-CcceEEEe-------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------
Q 014977 192 PGLQRGQVRIEHFG-LNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------ 257 (415)
Q Consensus 192 ~g~~dg~v~i~~~~-~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------ 257 (415)
|+.|++|++|+.. ++.+..+. +|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+..
T Consensus 208 -~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 208 -TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp -EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred -EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccc
Confidence 6789999999964 45555553 79999999999999999999999999 99999998876654431
Q ss_pred -----------------------------------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 258 -----------------------------------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 258 -----------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
..|...|++++|+|||++|++++.|++|++||+.+++.....
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~--- 362 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--- 362 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS---
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec---
Confidence 126778999999999999999999999999999887643100
Q ss_pred CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcE
Q 014977 303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSF 382 (415)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~ 382 (415)
+ .........++|++++.+++++.|+.+
T Consensus 363 ----------------------------------------~------------~~h~~~v~~~~~s~~~~l~s~s~d~~v 390 (611)
T 1nr0_A 363 ----------------------------------------P------------DVHATMITGIKTTSKGDLFTVSWDDHL 390 (611)
T ss_dssp ----------------------------------------S------------CSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred ----------------------------------------c------------cCCcceEEEEEECCCCcEEEEEcCCce
Confidence 0 001134556788888999999999999
Q ss_pred EEEEEec
Q 014977 383 YRCSFDP 389 (415)
Q Consensus 383 ~~~~~~~ 389 (415)
++|.+..
T Consensus 391 ~~w~~~~ 397 (611)
T 1nr0_A 391 KVVPAGG 397 (611)
T ss_dssp EEECSSS
T ss_pred EEeecCC
Confidence 9997653
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-33 Score=259.69 Aligned_cols=293 Identities=14% Similarity=0.150 Sum_probs=232.9
Q ss_pred cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
...+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+. .....+.+|...+.++.|++++.++++++.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d----- 107 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD----- 107 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-----
Confidence 36799999999999997 68999999 99999999976432 2334456788999999999999999999988
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-eEEeccCCCcceEEEecCCCceE
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+.|++|+........... +...+..+.+++++..++ .|+.+++||+...... .....|...+..+++.+++...+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 999999999888777776 678888999999888777 6899999998765443 33455666667777877777666
Q ss_pred EEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 189 LACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
+++ ++.|+.|++|+... +.+..+.+|...|++++|+|++++|++++.|+. |++||+++++.+..+.. ...|..+
T Consensus 188 ~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~~~ 262 (340)
T 4aow_A 188 IVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIINAL 262 (340)
T ss_dssp EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEEEE
T ss_pred EEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEEee
Confidence 665 66899999988765 556778899999999999999999999999999 99999999999988875 4579999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (415)
.|+|++.++ +++.|+.|++||++++....+...+
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------- 296 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE--------------------------------------------- 296 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------------------------------------------
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeEEEecccc---------------------------------------------
Confidence 999987655 5567999999999876543211111
Q ss_pred cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
............+..++|+++ +.|++++.||.|++|++..
T Consensus 297 --~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 297 --VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred --ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 000111222345677899998 6788888899999999874
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-35 Score=274.71 Aligned_cols=246 Identities=15% Similarity=0.172 Sum_probs=198.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEE--EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
..+|...|.+++|+|++++|+++.|+.|+|||+.+.+.... .....|...|.++.|+|++..+++++.| +.|+
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~ 164 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK 164 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence 35788999999999999877666699999999987543322 2233678889999999999999999988 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc-eEEEE
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 191 (415)
+||+.+++.+..+. |...|.+++|++++. +++ .|+.|++||+++++.+..+........+.++.++|++ .+++
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la- 243 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA- 243 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE-
Confidence 99999999999988 899999999999864 333 6899999999998887776655444456667776654 3454
Q ss_pred eCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 192 ~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+|+.|+.|++|+.. .+.+..+.+|...|++++|+|++ ++|++++.|+. |+|||+++++.+..+ + |...|++++|
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~--H~~~V~~vaf 319 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-S--HRDFVTGVAW 319 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-C--CSSCEEEEEE
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-C--CCCCEEEEEE
Confidence 47789999998865 46788899999999999999987 58999999999 999999999887655 4 8889999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEceeccc
Q 014977 270 SP-NVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 270 sp-dg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+| ++.+|++++.||+|++|++.+..+
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC----
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 98 899999999999999999977554
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-33 Score=265.67 Aligned_cols=283 Identities=14% Similarity=0.127 Sum_probs=223.2
Q ss_pred ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPT 114 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~ 114 (415)
....+|...|++++|+|++ ++|++|+ |+.|+||++.+........+..+...+.++.|++ ++..+++++.| +
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~ 141 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----G 141 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----T
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----C
Confidence 3457899999999999999 9999999 9999999999876665555457889999999999 77899999887 9
Q ss_pred eEEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
.|++||+.+ +.+..+. +...|.+++|+|++.+++ .|+.|++||+ +++.+..+..|.. .+.++.+++++.
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--KVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--CEEEEEECSSCT
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--cEEEEEECCCCC
Confidence 999999885 5555554 347899999999998888 6899999998 5778888888877 455566666666
Q ss_pred -EEEEeCCccCeEEEEEcCC----cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC--
Q 014977 188 -VLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-- 259 (415)
Q Consensus 188 -~l~~~g~~dg~v~i~~~~~----~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-- 259 (415)
++++ ++.|+.|++|+... ........|...|.+++|+| +|++|++++.|+. |++||+++++.+..+..+.
T Consensus 218 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 218 WLMAT-SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TEEEE-EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred CEEEE-EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence 5554 67899999999875 33333347999999999999 9999999999999 9999999988766666421
Q ss_pred ---C----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCC
Q 014977 260 ---D----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS 326 (415)
Q Consensus 260 ---~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (415)
+ ...+..++|+|++++ +++.||.|+|||+.+++...
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~----------------------------- 344 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH----------------------------- 344 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE-----------------------------
T ss_pred ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee-----------------------------
Confidence 1 134555777777777 77899999999998877432
Q ss_pred CCCCCCCcccccccccCcccccccceEEEEe--CCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHI--PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
.+.. ..+....++|++++.++++++||.|++|+++.
T Consensus 345 ---------------------------~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 345 ---------------------------QLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp ---------------------------EECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred ---------------------------eecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 1111 12345567999996666666799999999863
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-33 Score=260.03 Aligned_cols=238 Identities=13% Similarity=0.156 Sum_probs=202.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...|...|.+++|+|++++|++|+ |+.+++|++.+... .....+.+|...+.++.|.+++. +++++.| +.|
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i 166 (340)
T 1got_B 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTC 166 (340)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCE
T ss_pred eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcE
Confidence 457889999999999999999999 99999999976432 23334557888899999998887 4555655 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++||+.+++.+..+. |...|.+++|+|++.+++ .|+.|++||+++++.+..+..|... +.++.++|++.+|++
T Consensus 167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~--v~~v~~~p~~~~l~s- 243 (340)
T 1got_B 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD--INAICFFPNGNAFAT- 243 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC--EEEEEECTTSSEEEE-
T ss_pred EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC--EEEEEEcCCCCEEEE-
Confidence 999999999998887 899999999999998887 6999999999999999999888874 455556666777776
Q ss_pred CCccCeEEEEEcCCcc-eEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 193 GLQRGQVRIEHFGLNM-IKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~-~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
|+.|++|++|+..... +..+.. +...|.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+ |...|.+++|
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~ 320 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLGV 320 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEEEE
Confidence 6789999999987543 333332 2347999999999999999999999 99999999999999988 8889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEE
Q 014977 270 SPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd 289 (415)
+|+|++|++|+.|++|+|||
T Consensus 321 s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEcCCccEEecC
Confidence 99999999999999999996
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-33 Score=264.49 Aligned_cols=247 Identities=12% Similarity=0.189 Sum_probs=202.9
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc------eeEEEeccCCCeeEEEEeeeCC----e---EEEE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK------ETFRRDLKSGGFRIVEMLFRCN----I---LALV 103 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~---~~l~ 103 (415)
....+|.+.|++++|+| ++|++|+ |+.|+||++++.+ .... +..|...+.++.|+++ + .+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--EecCCCcEEEEEEecccccCCccccEEE
Confidence 34678999999999999 7999998 9999999998765 3333 3478888999999999 8 8899
Q ss_pred ecCCCCCCCCCeEEEEECCCCCE-----EEEEE-c-----cCceeEEEEc----CCeEE-EE---eCCeEEEEEcCC---
Q 014977 104 GAGDNSQYPPTKVIIWDDHQSRC-----IGEFA-F-----RSDVRSVKLS----RDRIV-VV---LEHKIYVYSFVD--- 161 (415)
Q Consensus 104 s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~-~-----~~~i~~l~~~----~~~~~-~~---~d~~i~iwd~~~--- 161 (415)
+++.| +.|++||+.+++. +..+. | ...|.+++|+ |++.. ++ .|+.|++||+.+
T Consensus 86 s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 86 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 98887 9999999988886 77776 6 5899999999 99887 66 689999999988
Q ss_pred ---ceeee-----EEec-----cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEec---C---ccceEE
Q 014977 162 ---LKLLH-----QIET-----LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA---H---DSHIAC 221 (415)
Q Consensus 162 ---~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~---~---~~~i~~ 221 (415)
++.+. .+.. ......+.++.+++++ ++++ ++.|+.|++|+.. .+.+..+.. | ...|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 66666 6644 2222345566666677 6665 7789999999876 566777888 8 999999
Q ss_pred EEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 222 FTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 222 l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
++|+|++++|++++.| +. |++||+++++.+..+.... |...|.+++|+|++++|++++.||.|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999 99 9999999999988887521 5678999999999999999999999999
Q ss_pred EEceecccC
Q 014977 288 FSLRVRVVG 296 (415)
Q Consensus 288 wd~~~~~~~ 296 (415)
||+++++..
T Consensus 318 wd~~~~~~~ 326 (397)
T 1sq9_A 318 WDVKTKERI 326 (397)
T ss_dssp EETTTTEEE
T ss_pred EEcCCCcee
Confidence 999887654
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=261.69 Aligned_cols=303 Identities=10% Similarity=0.127 Sum_probs=231.5
Q ss_pred CCCCCCceEEEEEeCCCCEEE-EEe----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC---eEEEEecCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFA-AGT----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQY 111 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la-~g~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~ 111 (415)
..+|...|.+++|+|++..++ +|+ |+.|+||++++.+......+ .+...+.++.|+++ +..+++++.|
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETT---
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCC---
Confidence 467999999999999997665 453 78999999998665444333 67788999999998 5888888887
Q ss_pred CCCeEEEEECCCCC-EEEEEE-ccCceeEEEE------cCCeEEEE---eCCeEEEEEcCCce-eeeEEeccCC--Ccce
Q 014977 112 PPTKVIIWDDHQSR-CIGEFA-FRSDVRSVKL------SRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLAN--LRGL 177 (415)
Q Consensus 112 ~~~~i~vwd~~~~~-~~~~~~-~~~~i~~l~~------~~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~--~~~~ 177 (415)
+.|++||+.+++ .+..+. |...|.++.| +|++..++ .|+.|++||+.+++ .+..+..+.. ...+
T Consensus 90 --g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 90 --GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp --SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred --CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999987 777777 8999999955 67887777 68999999998876 6666755443 2234
Q ss_pred EEEe----cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCC---CCCEEEEEeCCCcEEEEEECCCCc
Q 014977 178 CCLS----HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL---DGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 178 ~~~~----~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
.++. +++++.++++ ++.|+.|++|+...........|...|.+++|+| ++.+|++++.||. |++||+++++
T Consensus 168 ~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~ 245 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQH 245 (357)
T ss_dssp EEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCC
Confidence 4444 5677778876 6689999999998877777788999999999999 9999999999999 9999998765
Q ss_pred EEEEEe-----cCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977 251 RLQEVR-----RGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (415)
Q Consensus 251 ~~~~~~-----~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (415)
.+..+. . |...|.+++|+|+++ +|++++.||.|++||++++.........
T Consensus 246 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 301 (357)
T 3i2n_A 246 PTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE---------------------- 301 (357)
T ss_dssp TTTEEEEEEEEC--CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT----------------------
T ss_pred cccceeeeccCC--CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC----------------------
Confidence 443333 5 788999999999998 8999999999999999987654211110
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEE-EEEeCCcEEEEEEec
Q 014977 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVV-IVSMDGSFYRCSFDP 389 (415)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~dg~~~~~~~~~ 389 (415)
+... ...........+......+..++|+++ ..++ +++.||.|++|++..
T Consensus 302 ----g~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 302 ----GIEM-----------GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp ----SCCC-----------CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ----CCcc-----------ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 0000 000011123345555567888999998 5566 577799999999975
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-33 Score=262.03 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=204.0
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..|.++|++++|+|++++|++++ ++.|++|++++.+......+..|...+.++.|++++..+++++.| +.|++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEE
Confidence 45899999999999999999998 999999999886533334455788899999999999999998887 999999
Q ss_pred ECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee---eeEE-eccCCCcceEEEecCCCceEE
Q 014977 120 DDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL---LHQI-ETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 120 d~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l 189 (415)
|+.+++....+. |...|.+++|+|++.+++ .|+.|++||+..++. ...+ ..|.. .+.++.+++++.++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC--CeeEEEEcCCCCEE
Confidence 998887665553 788999999999998887 589999999987653 2233 33444 56677777777788
Q ss_pred EEeCCccCeEEEEEcC-------------------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977 190 ACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
++ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++++|++++.|+. |++||+++++
T Consensus 158 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~ 235 (372)
T 1k8k_C 158 AA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKM 235 (372)
T ss_dssp EE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTT
T ss_pred EE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCCc
Confidence 76 6689999999853 4667777889999999999999999999999999 9999999999
Q ss_pred EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
.+..+.. |...|.+++|+|++++|+++ .|+.|++|++.+
T Consensus 236 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred eeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999987 77799999999999988887 899999999998
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.5e-33 Score=254.46 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=194.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i 116 (415)
..+|.+.|++++|+|+|++||+|+ |+.|+||+++.........+.+|...|.++.|++ ++..|++++.| ++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v 79 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKV 79 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEE
Confidence 568999999999999999999999 9999999997532222334568889999999975 37889999988 999
Q ss_pred EEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC--
Q 014977 117 IIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS-- 184 (415)
Q Consensus 117 ~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-- 184 (415)
++||+.+++ .+..+. |...|.+++|+|+ +.+++ .|+.|++||++++.. ...+..|...+..++++++.
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 999998874 445555 8899999999997 66665 699999999987532 34566777655555555431
Q ss_pred ---------CceEEEEeCCccCeEEEEEcCCc-----ceEEEecCccceEEEEeCCCC---CEEEEEeCCCcEEEEEECC
Q 014977 185 ---------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 185 ---------~~~~l~~~g~~dg~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~ 247 (415)
++.+|++ |+.|++|++|+.+.. ....+.+|...|.+++|+|++ .+|++++.|+. |+|||++
T Consensus 160 ~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQD 237 (297)
T ss_dssp ----------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEES
T ss_pred ccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeC
Confidence 1346665 778999999987642 456788999999999999985 89999999999 9999997
Q ss_pred CCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 248 DGT---RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 248 ~~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+.. ....+....|...|.+++|+|+|++|++++.||+|+||+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 753 222332223677899999999999999999999999999864
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=250.97 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=228.7
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|++++| |++++|++|+ ||.|++|++.+...... +..+...+.++.|++++..+++++.| +.|
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 83 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV--VYTGQGFLNSVCYDSEKELLLFGGKD-----TMI 83 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE--EEECSSCEEEEEEETTTTEEEEEETT-----SCE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE--eecCCccEEEEEECCCCCEEEEecCC-----CeE
Confidence 446789999999999 9999999999 99999999987554433 33678889999999999999999988 999
Q ss_pred EEEECCCC---CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 117 IIWDDHQS---RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 117 ~vwd~~~~---~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
++|++... +.+..+. |...|.++.|+++....+ .|+.|++|| .++.+..+..|...+..+.+.+. ++..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~ 160 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-SENKFLT 160 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-TTTEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-CCCEEEE
Confidence 99997654 5566666 899999999965433333 799999999 67778888888776555555552 3445655
Q ss_pred eCCccCeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
++.|+.|++|+ .......+.. |...+.+++|+|++. +++++.|+. |++||+++++.+..+.. |...|.+++|+
T Consensus 161 -~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~ 234 (313)
T 3odt_A 161 -ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYCIKLL 234 (313)
T ss_dssp -EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEEC
T ss_pred -EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEEEEEe
Confidence 66899999998 4555666666 899999999999998 999999999 99999999999999987 78899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
|++ .|++++.||.|++||+++++..
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~------------------------------------------------------ 259 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLK------------------------------------------------------ 259 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEE------------------------------------------------------
T ss_pred cCC-CEEEEecCCEEEEEECCCCcee------------------------------------------------------
Confidence 999 5889999999999999887643
Q ss_pred ceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
..+..+......++|++++.+++++.||.|++|++..
T Consensus 260 --~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 260 --QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp --EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred --EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 2344455567788999998899999999999999876
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.3e-33 Score=260.78 Aligned_cols=239 Identities=16% Similarity=0.214 Sum_probs=206.2
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+...|.+++|+|+|++|++|+ |+.|+|||+++.+.... +.+|...+.++.|++++..+++++.| +.|++||+
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~ 194 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDL 194 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEEC
Confidence 344599999999999999999 99999999987654433 55788899999999999999999988 99999999
Q ss_pred CCCCEEEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEE-------eccCCCcceEEEecCCCceEEE
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI-------ETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
.++++...+.+...+.+++|+| ++.+++ .|+.|++||+.+++.+..+ .+|.. .+.++.+++++.+|+
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--SVYSVVFTRDGQSVV 272 (393)
T ss_dssp TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS--CEEEEEECTTSSEEE
T ss_pred CCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC--CEEEEEECCCCCEEE
Confidence 9999999888889999999999 787777 6999999999998887766 23444 566677777788887
Q ss_pred EeCCccCeEEEEEcCC-------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 191 CPGLQRGQVRIEHFGL-------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+ |+.|+.|++|+... .....+.+|...|.+++|+|++.+|++++.|+. |++||+.+++.+..+.+
T Consensus 273 s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 273 S-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp E-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred E-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEECC
Confidence 6 67899999998753 234567889999999999999999999999999 99999999999999988
Q ss_pred CCCcccEEEEEeCC------CCCEEEEEeCCCeEEEEEceecc
Q 014977 258 GVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 258 ~~~~~~v~~l~~sp------dg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|...|.+++|++ ++++|++|+.||+|+||++++.+
T Consensus 351 --h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 351 --HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp --CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred --CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 888999999876 68899999999999999998654
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=264.60 Aligned_cols=297 Identities=16% Similarity=0.183 Sum_probs=232.4
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+|...|++++|+|++++|++++ |+.|++|+.. .+... .+..+...+.++.|++++..+++++.+ +.|++|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 176 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLN--VLNFHRAPIVSVKWNKDGTHIISMDVE-----NVTILW 176 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE--EECCCCSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeee--eccCCCccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence 34788999999999999999999 9999999943 33333 344788899999999999988888887 999999
Q ss_pred ECCCCCEEEEEE-ccCc---------------eeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 120 DDHQSRCIGEFA-FRSD---------------VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~---------------i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
|+.+++.+..+. +... +.++.|++++.+++ .++.|++||+.+++.+..+..|...+ .++.
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i--~~~~ 254 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI--SVLE 254 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE--EEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce--EEEE
Confidence 999999988887 4444 99999999988777 79999999999999888888777744 4555
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (415)
+++++.+|++ ++.|+.|++|+... +.+..+..|...|.+++|+|++ +|++++.|+. |++||+++++.+..+.. |
T Consensus 255 ~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~ 329 (425)
T 1r5m_A 255 FNDTNKLLLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--D 329 (425)
T ss_dssp EETTTTEEEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--T
T ss_pred ECCCCCEEEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--C
Confidence 5556667776 66899999998664 5677788899999999999999 9999999999 99999999999988887 7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccc
Q 014977 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG 340 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (415)
...|.+++|+|++++|++++.||.|++||+++++........ ....
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------------------------~~~~------- 375 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG---------------------------NRDG------- 375 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------------------------------
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec---------------------------cccc-------
Confidence 789999999999999999999999999999987632100000 0000
Q ss_pred ccCcccccccceEEEEeCCC--ceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977 341 VLPKYFSSEWSFAQFHIPEV--THFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~dg~~~~~~~~ 388 (415)
.+.. ........+..+.. .+..++|+++ ..|++++.||.|++|+++
T Consensus 376 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 ILNP--LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---C--EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCc--ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 0000 00112234444433 7788999998 678888889999999874
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.7e-33 Score=281.97 Aligned_cols=247 Identities=14% Similarity=0.219 Sum_probs=202.3
Q ss_pred cCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
...+|.+.|++++|+|++ .+|++|+ |+.|+||++..... .....+.+|...+.++.|++++.++++++.|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----- 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----- 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence 467899999999999875 7899999 99999999975332 2233455888999999999999999999988
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCc
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSST 186 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 186 (415)
+.|++||+.+++.+..+. |...|.+++|+|++..++ .|++|++||+......... ..|...+..++++++...
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 999999999999998887 999999999999998877 6999999998654333222 234444444455544433
Q ss_pred eEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 187 SVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
..+++ |+.|++|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+. +...|.
T Consensus 532 ~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~v~ 606 (694)
T 3dm0_A 532 PTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSVIH 606 (694)
T ss_dssp CEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSCEE
T ss_pred ceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCcEE
Confidence 45655 77899999999765 456678899999999999999999999999999 9999999999887776 345799
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+++|+|++.+|++++ ++.|+|||+++++..
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIV 636 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence 999999999888776 555999999987754
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.1e-32 Score=267.70 Aligned_cols=276 Identities=16% Similarity=0.217 Sum_probs=231.4
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|...|.+++|+|++++|++++ |+.|++|+.+. +.. ..+..|...+.++.|+|++..+++++.| +.|
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~l~t~~~d-----~~i 327 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVWGVAFSPDGQTIASASDD-----KTV 327 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEE--EEECCCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEE--EEEecCCCCeEEEEECCCCCEEEEEeCC-----CeE
Confidence 34567999999999999999999999 99999999764 222 2345788889999999999999999887 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++||.... .+..+. |...+.+++|+|++..++ .|+.|++||. +++.+..+..|... +.++.+++++.+|++
T Consensus 328 ~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~- 402 (577)
T 2ymu_A 328 KLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VRGVAFSPDGQTIAS- 402 (577)
T ss_dssp EEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC--EEEEEECTTSSCEEE-
T ss_pred EEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC--eEEEEECCCCCEEEE-
Confidence 99996544 445555 889999999999999887 6899999995 56788888888774 455666667778876
Q ss_pred CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (415)
++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+.. |...|.+++|+|+
T Consensus 403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd 478 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD 478 (577)
T ss_dssp EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCC
Confidence 66899999999999999999999999999999999999999999999 999996 6788888888 7889999999999
Q ss_pred CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF 352 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (415)
+++|++++.|++|++||.. ++..
T Consensus 479 ~~~las~~~d~~i~iw~~~-~~~~-------------------------------------------------------- 501 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRN-GQLL-------------------------------------------------------- 501 (577)
T ss_dssp SCEEEEEETTSEEEEEETT-SCEE--------------------------------------------------------
T ss_pred CCEEEEEeCCCEEEEEcCC-CCEE--------------------------------------------------------
Confidence 9999999999999999953 3211
Q ss_pred EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
..+.-+...+..++|+|+ ..|++++.||.|++|+.
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 123333456677899998 66778888999999985
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=255.30 Aligned_cols=248 Identities=16% Similarity=0.160 Sum_probs=198.5
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|...|.+++|+|++++|++|+ |+.++||++..........+.+|...+.++.|+|++..|++++.| +.|++
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~i 131 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWV 131 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEE
Confidence 368999999999999999999999 999999999876544445566888999999999999999999988 99999
Q ss_pred EECCCCCE---EEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCceEE
Q 014977 119 WDDHQSRC---IGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 119 wd~~~~~~---~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
||+.++.. +..+. |...|.+++|+|++.+++ .|+.|++||+.+++ +...+.+|.. .+.+++++|++.+|
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~l 209 (345)
T 3fm0_A 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES--TVWSLAFDPSGQRL 209 (345)
T ss_dssp EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC--ceEEEEECCCCCEE
Confidence 99987643 44444 889999999999998887 69999999998765 3456777776 55666677778888
Q ss_pred EEeCCccCeEEEEEcCC----------------cceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--
Q 014977 190 ACPGLQRGQVRIEHFGL----------------NMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-- 250 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~----------------~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-- 250 (415)
++ |+.|++|++|+... ..+..+.+ |...|.+++|+|++.+|++++.|+. |++|+...+.
T Consensus 210 ~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~ 287 (345)
T 3fm0_A 210 AS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDP 287 (345)
T ss_dssp EE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCT
T ss_pred EE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCc
Confidence 76 67899999997521 12333444 8889999999999999999999999 9999987542
Q ss_pred --EEEEE---ecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977 251 --RLQEV---RRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 251 --~~~~~---~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
....+ ....|...|++++|+|++ .+||+++.||+|++|++.++++.
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 11111 112278899999999998 49999999999999999998765
No 38
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-32 Score=248.56 Aligned_cols=243 Identities=13% Similarity=0.162 Sum_probs=205.2
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
....|...|.+++|+|++++|++|+ |+.|++||+.+.+.... +..|...+.++.|+|++.++++++.| +.|+
T Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~ 122 (304)
T 2ynn_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVK 122 (304)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCC-----CeEE
Confidence 3457899999999999999999999 99999999998766544 44788899999999999999999988 9999
Q ss_pred EEECCCCCE-EEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEe-ccCCCcceEEEecCCCceEEE
Q 014977 118 IWDDHQSRC-IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 118 vwd~~~~~~-~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+||++++.. ...+. |...|.+++|+| ++..++ .|+.|++||+.+++....+. .+...+..+.+.+.+++.+|+
T Consensus 123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 999988854 44555 899999999999 555555 69999999998877666654 344556677777777887887
Q ss_pred EeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+ |+.|++|++|+... +.+..+.+|...|.+++|+|++.+|++++.||. |++||+.+++.+..+.. +...+++++|
T Consensus 203 s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~--~~~~~~~~~~ 278 (304)
T 2ynn_A 203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIAT 278 (304)
T ss_dssp E-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECC--SSSSEEEEEE
T ss_pred E-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccC--CCccEEEEEE
Confidence 6 67899999998764 667889999999999999999999999999999 99999999999999987 6778999999
Q ss_pred CCCCC--EEEEEeCCCeEEEEEceec
Q 014977 270 SPNVQ--WLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 270 spdg~--~l~s~s~dg~i~vwd~~~~ 293 (415)
+|++. +|++|+.|| +.+|++.+.
T Consensus 279 ~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 279 HPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp CTTCGGGCEEEEETTE-EEEEECC--
T ss_pred CCCCCceEEEEecCCc-eEEEEeccC
Confidence 99875 577777666 888888754
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=270.42 Aligned_cols=239 Identities=11% Similarity=0.092 Sum_probs=189.9
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..+.+.|++++|+|++++|++|+ |+.|+||++.+........+..|...+.++.|++++.++++++.| +.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence 34677899999999999999998 999999999976423344566888999999999999999999988 999999
Q ss_pred ECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEec-cCCCcceEEEecCCCceE
Q 014977 120 DDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIET-LANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 120 d~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 188 (415)
|+.+++ ....+. |...|.+++|+|++.+++ .|+.|++||+.+++ ....+.. |.. .+.++.+++++.+
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS--TILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--CEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--CeEEEEEcCCCCE
Confidence 998877 444443 899999999999988777 68999999998876 3666665 665 5566666677778
Q ss_pred EEEeCCccCeEEEEEcC-------------------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 189 LACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
|++ ++.|+.|++|+.. ++.+..+ .|...|.+++|+|+|++|++++.|+. |++||+.++
T Consensus 161 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAP 237 (377)
T ss_dssp EEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECST
T ss_pred EEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCC
Confidence 876 6689999999974 3344555 89999999999999999999999999 999999999
Q ss_pred cE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 250 TR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 250 ~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+. +..+.. |...|.+++|+|++++|++++.++.+ +|+...
T Consensus 238 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 238 EQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp TSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 87 667777 77899999999999999999877755 777663
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-32 Score=256.22 Aligned_cols=284 Identities=14% Similarity=0.180 Sum_probs=224.5
Q ss_pred CCCCCCceEEEEEeCC---C-C-EEEEEeCCcEEEEEccCCceeEEEe---ccCCCeeEEEEeeeCC----eEEEEecCC
Q 014977 40 SDVDEIELISVSWNQD---Y-G-CFAAGTSCGFRIYNCEPFKETFRRD---LKSGGFRIVEMLFRCN----ILALVGAGD 107 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~---g-~-~la~g~d~~v~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~l~s~~~ 107 (415)
..+|...|++++|+|+ + . +++++.++.|+||++.+.+...... ...+...+.++.|+++ +.++++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 3 3 4445558899999998755433322 1135677999999988 788999888
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEE
Q 014977 108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCC 179 (415)
Q Consensus 108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~ 179 (415)
| +.|++||+.+++.+..+. |...|.+++|+| ++.+++ .|+.|++||+.+++.+..+ ..|.. .+.+
T Consensus 94 d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~ 166 (366)
T 3k26_A 94 R-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD--EVLS 166 (366)
T ss_dssp T-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS--CEEE
T ss_pred C-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC--ceeE
Confidence 7 999999999999999998 999999999999 777776 5899999999999988887 45555 5666
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCCcc-e----------------------------EEEecCccceEEEEeCCCCCE
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGLNM-I----------------------------KLINAHDSHIACFTLTLDGLL 230 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~----------------------------~~~~~~~~~i~~l~~sp~g~~ 230 (415)
+.+++++.++++ ++.||.|++|+..... . .....|...|.+++|+ +++
T Consensus 167 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 167 ADYDLLGEKIMS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp EEECTTSSEEEE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred EEECCCCCEEEE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 666777778876 5689999999877522 1 1223389999999998 779
Q ss_pred EEEEeCCCcEEEEEECCCCcE--------------EEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCeEEEEEceecc
Q 014977 231 LATASTRGTLIRIFNTVDGTR--------------LQEVRRGVDRAEIYSIALSPN--VQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~~~--------------~~~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|++++.|+. |++||+.+++. +..+.. |...|.+++|+|+ +++|++++.||.|++||+++++
T Consensus 244 l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 244 ILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999 99999987643 667776 7778999999999 9999999999999999999876
Q ss_pred cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC--CCceEEEEecCC-C
Q 014977 295 VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP--EVTHFIAAFGSQ-N 371 (415)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~ 371 (415)
.... ....+..+ ...+..++|+++ +
T Consensus 321 ~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 321 PHKA----------------------------------------------------KCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp GGGC----------------------------------------------------EEEEECCTTCCSCEEEEEECTTSS
T ss_pred Cccc----------------------------------------------------cceEEcccccCCceEEEEeCCCCC
Confidence 4310 00122222 356777899998 7
Q ss_pred EEEEEEeCCcEEEEEEe
Q 014977 372 TVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 372 ~i~~~~~dg~~~~~~~~ 388 (415)
.|++++.||.|++|++.
T Consensus 349 ~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCEEEEEEec
Confidence 78888889999999873
No 41
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-33 Score=256.71 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=192.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.|++++|+|+|++||+|+ |+.|+|||+.+........+.+|...|.++.|++ ++..|++++.| ++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CE
Confidence 3568999999999999999999999 9999999998765444445668889999999975 47888899888 99
Q ss_pred EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCC
Q 014977 116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~ 184 (415)
|++||+++++ .+..+. |...|.+++|+|+ +.+++ .|+.|++||+..+.. ...+..|...+..+.++++.
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 9999998874 555555 8899999999997 66666 699999999986532 33445566655555555541
Q ss_pred ---------------CceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCC----CEEEEEeCCCcEE
Q 014977 185 ---------------STSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDG----LLLATASTRGTLI 241 (415)
Q Consensus 185 ---------------~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I 241 (415)
.+.+|+ +|+.|+.|++|+.... .+..+.+|...|.+++|+|++ .+|++++.|+. |
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v 240 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-V 240 (316)
T ss_dssp CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-E
T ss_pred CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-E
Confidence 124555 4789999999988642 556678999999999999987 89999999999 9
Q ss_pred EEEECCCC---c-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 242 RIFNTVDG---T-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 242 ~vwd~~~~---~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+|||+.+. + ....+.. |...|.+++|+|++++|++++.|++|+||+...
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99998763 1 1223444 677899999999999999999999999999863
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.8e-32 Score=248.01 Aligned_cols=241 Identities=9% Similarity=0.175 Sum_probs=200.0
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++|+ |+.|+|||+.+.+.... +.+|...+.++.|++++..+++++.| +.|+
T Consensus 60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~ 132 (319)
T 3frx_A 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD-----KTIK 132 (319)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT-----SCEE
T ss_pred EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence 3568999999999999999999999 99999999998665443 44888899999999999999999988 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeE------EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI------VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~------~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+||++ ++++..+. |...|.++.+.|... .++ .|+.|++||+.+++....+.+|.. .+.++.++|++.
T Consensus 133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~ 209 (319)
T 3frx_A 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGT 209 (319)
T ss_dssp EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSS
T ss_pred EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCC
Confidence 99986 45566655 899999999998643 444 699999999999998888888887 455566667777
Q ss_pred EEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC------CC
Q 014977 188 VLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG------VD 260 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~------~~ 260 (415)
+|++ |+.||.|++|+..... +..+. +...|.+++|+|++.+|++++.+ . +++|++..+..+..+... .+
T Consensus 210 ~l~s-~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~-i~v~~~~~~~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 210 LIAS-AGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-G-IKVFSLDPQYLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEE-EETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-E-EEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred EEEE-EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-C-cEEEEeCcCeeeeccCccccccccCc
Confidence 8876 6689999999987654 44444 55789999999999999988754 5 999999888777766532 13
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 457899999999999999999999999999875
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=251.25 Aligned_cols=242 Identities=17% Similarity=0.263 Sum_probs=186.0
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
+|...|.+++|+|++++|++|+ |+.|+||+++... ......+.+|...+.++.|+|++.+|++++.| +.
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~ 130 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KS 130 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SC
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CE
Confidence 4999999999999999999999 9999999985321 12233456788899999999999999999988 99
Q ss_pred EEEEECCCC----CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc--eeeeEEeccCCCcceEEEecCCC
Q 014977 116 VIIWDDHQS----RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL--KLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 116 i~vwd~~~~----~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
|++||+... +++..+. |...|.+++|+|++.+++ .|+.|++||+.++ +++..+.+|...+..++++++..
T Consensus 131 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 999998432 4556666 889999999999998887 6999999998765 67788888888665555655544
Q ss_pred ceEEEEeCCccCeEEEEEcCCc---------ceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEE
Q 014977 186 TSVLACPGLQRGQVRIEHFGLN---------MIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQ 253 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~~---------~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~ 253 (415)
+..|++ |+.|++|++|+.... ....+.. |...|.+++|++++ +|++++.||. |+|||..+++ ...
T Consensus 211 ~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 211 VFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVFA 287 (330)
T ss_dssp SCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEEE
T ss_pred eeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEEe
Confidence 666665 778999999987542 2333444 89999999999766 7999999999 9999998774 232
Q ss_pred EE-ecCCCcc-cEEEEEeCC--CCCEEEEEeCCCeEEEEEceec
Q 014977 254 EV-RRGVDRA-EIYSIALSP--NVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 254 ~~-~~~~~~~-~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.. .. |.. .|.+++|+| ++++|++++.||+|+||++++.
T Consensus 288 ~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 288 KRALC--HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EESCT--TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred ccccc--cccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 32 23 655 899999999 7899999999999999998753
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-33 Score=269.55 Aligned_cols=287 Identities=12% Similarity=0.048 Sum_probs=214.7
Q ss_pred CCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i 116 (415)
..+|...|++|+|+| ++.+||+|+ ||.|+|||+++.+......+.+|...|.++.|+| ++..|++++.| ++|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v 189 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTT 189 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEE
Confidence 456888999999999 567999999 9999999998766555555668889999999997 67888999988 999
Q ss_pred EEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 117 IIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
++||++++....... +...+.+++|+|++.+++ .|+.|++||++ ++.+..+..|...+ .++.++|++..++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v--~~v~~~p~~~~~~ 266 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKV--THVALNPCCDWFL 266 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCE--EEEEECTTCSSEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceE--EeeeecCCCceEE
Confidence 999987665433333 245678999999998887 68999999986 45667777887754 4555555554444
Q ss_pred EeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc----c
Q 014977 191 CPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR----A 262 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~----~ 262 (415)
++|+.|+.|++|+.... ......+|...|++++|+|+|++|++++.|+. |+|||+.+++....+..+.+. .
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccc
Confidence 45778999999987642 23334679999999999999999999999999 999999999887777653221 1
Q ss_pred cEEEEEeCCCCCEEEEEe------------CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977 263 EIYSIALSPNVQWLAVAS------------DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN 330 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (415)
.+....|+|++.+++++. .++.|++||+.+++....+...
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~---------------------------- 397 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP---------------------------- 397 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----------------------------
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----------------------------
Confidence 234456777777776654 2357999999887643210000
Q ss_pred CCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
.......+++|+|++.++++++|+.|++|++..
T Consensus 398 --------------------------~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~ 430 (435)
T 4e54_B 398 --------------------------ESSGISSLNEFNPMGDTLASAMGYHILIWSQQE 430 (435)
T ss_dssp --------------------------SCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred --------------------------CCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence 001233456899998888888899999998865
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=255.87 Aligned_cols=279 Identities=15% Similarity=0.182 Sum_probs=226.0
Q ss_pred CCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEc----cCCc------eeEEEe--ccC------CCeeEEEEeeeCCeE
Q 014977 41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC----EPFK------ETFRRD--LKS------GGFRIVEMLFRCNIL 100 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~----~~~~------~~~~~~--~~~------~~~~~~~~~~~~~~~ 100 (415)
..|.+.|.+++|+|+++ +||+|+ |+.|++|++ .+.+ ...... +.. +...+.++.|++++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 999999 999999999 7655 222211 111 466899999999999
Q ss_pred EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC--
Q 014977 101 ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL-- 174 (415)
Q Consensus 101 ~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~-- 174 (415)
++++++.+ +.|++|| .+++.+..+. |...|.+++|+|++.+++ .|+.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 122 SIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp EEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999887 9999999 7788888887 899999999999998777 6899999999999998888766654
Q ss_pred -------------cceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977 175 -------------RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240 (415)
Q Consensus 175 -------------~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (415)
+..+.+. +++. +++ ++.++.|++|+... +.+..+..|...|.+++|+|++++|++++.|+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~- 270 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWV--DDDK-FVI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT- 270 (425)
T ss_dssp ----------CCCBSCCEEE--ETTE-EEE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-
T ss_pred ceeeccccCCcceeeEEEEc--CCCE-EEE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-
Confidence 4444444 4454 444 66899999988765 556778899999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD 320 (415)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (415)
|++||+.+++.+..+.. |...|.+++|+|++ +|++++.|+.|++||+++++..
T Consensus 271 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------------------------ 323 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL------------------------ 323 (425)
T ss_dssp EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE------------------------
T ss_pred EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe------------------------
Confidence 99999999998888877 77899999999999 9999999999999999876632
Q ss_pred ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
..+.........++|+++ +.+++++.||.|++|++..
T Consensus 324 --------------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 324 --------------------------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp --------------------------------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred --------------------------------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 123333456677899998 6778888899999999975
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.3e-32 Score=252.42 Aligned_cols=197 Identities=16% Similarity=0.146 Sum_probs=159.6
Q ss_pred EEEEeeeCCeEEE--EecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceee
Q 014977 90 IVEMLFRCNILAL--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL 165 (415)
Q Consensus 90 ~~~~~~~~~~~~l--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~ 165 (415)
+..++|+||+.++ ++++.| +.|+|||+.+++.+..+.|...|.+++|+|++++++ .++.+.+|+..+++.+
T Consensus 136 ~~~v~fSpDg~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI 210 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred EEEEEEcCCCCEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence 4567889988665 455566 999999999999999999999999999999999988 6788889988887766
Q ss_pred eEEeccCCCcceEEEecCCCceEEEEeCCccC----eEEEEEcCCc-----ceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLN-----MIKLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
...........+.++.++|++.+++++ +.++ .+++|+.... ....+.+|...|++++|+|+|++||+|+.
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~-s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAA-SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEE-EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEE-ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 544333333355666667777777764 3454 4555765442 23456789999999999999999999999
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|+. |+|||+++++++..+..+ |...|++++|+|||++||+++.|++|+|||+..+.
T Consensus 290 D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 290 DNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp TSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999 999999999999886433 88899999999999999999999999999997554
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.5e-32 Score=251.30 Aligned_cols=239 Identities=14% Similarity=0.203 Sum_probs=200.9
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce----eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
...|...|.+++|+|+|.+|++|+ |+.+++|++..... .....+..|...+.++.|++++..+++++.| +
T Consensus 102 ~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----~ 176 (354)
T 2pbi_B 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----G 176 (354)
T ss_dssp EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----S
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----C
Confidence 345778899999999999999999 99999999864210 1112233678889999999999888888887 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcC--CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
.|++||+++++.+..+. |...|.+++++| ++.+++ .|+.|++||+++++++..+..|... +.++.++|++.+
T Consensus 177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~--v~~v~~~p~~~~ 254 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD--VNSVRYYPSGDA 254 (354)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSE
T ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC--eEEEEEeCCCCE
Confidence 99999999999999988 899999999987 455666 6999999999999999999888874 455555666677
Q ss_pred EEEeCCccCeEEEEEcCCcc-eEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 189 LACPGLQRGQVRIEHFGLNM-IKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~-~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
+++ |+.|++|++|+.+... +..+..+ ...+.+++|+|+|++|++++.|+. |++||+.+++.+..+.+ |...|.
T Consensus 255 l~s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~v~ 330 (354)
T 2pbi_B 255 FAS-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENRVS 330 (354)
T ss_dssp EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSCEE
T ss_pred EEE-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCcEE
Confidence 776 6789999999987643 3334332 347889999999999999999999 99999999999988887 888999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 266 SIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
+++|+|+|++|++++.||+|+||+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999995
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-32 Score=261.39 Aligned_cols=277 Identities=10% Similarity=0.039 Sum_probs=217.7
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
..+++++|+|++++|++++ |+.+++|++.+..... .+..+ .......+++++..+++++.| +.|++||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--MLKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT--TSCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee--EEecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCC
Confidence 3456899999999999999 9999999998644322 22233 334445678899899999887 9999999999
Q ss_pred CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
++....+. |...|.+++|+|++.+++ .|+.|++||+.+++.+..+..|...+ .++.+++++.+|++ ++.|+.|
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s-~~~d~~v 205 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLS-ASLDGTI 205 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE--EEEEEETTTTEEEE-EETTSCE
T ss_pred cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE--EEEEEcCCCCEEEE-EcCCCcE
Confidence 98887764 899999999999998877 68999999999999999998888744 45555556677775 6689999
Q ss_pred EEEEcCC-cceEEEec---Cc---------------------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 200 RIEHFGL-NMIKLINA---HD---------------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 200 ~i~~~~~-~~~~~~~~---~~---------------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
++|+... +.+..+.. |. ..+.+++|+|+|++|++++.||. |++||+++++.+..
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEE
Confidence 9998764 45555554 22 44555666899999999999999 99999999998877
Q ss_pred EecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977 255 VRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS 333 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (415)
+... |...|.+++|+|+++ +|++++.||.|++||+++++...
T Consensus 285 ~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~------------------------------------ 327 (420)
T 3vl1_A 285 LPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV------------------------------------ 327 (420)
T ss_dssp ECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------------------------------------
T ss_pred cccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch------------------------------------
Confidence 7653 677999999999999 99999999999999999876321
Q ss_pred cccccccccCcccccccceEEEEe-CCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 334 SLSFMRGVLPKYFSSEWSFAQFHI-PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
..+.. .......+.+.+.+.+++++.||.+++|.+..
T Consensus 328 -------------------~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 328 -------------------GEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -------------------EEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred -------------------hhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 12232 22344555555446677777799999999976
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=266.26 Aligned_cols=248 Identities=13% Similarity=0.184 Sum_probs=206.3
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCe
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTK 115 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~ 115 (415)
...|...|.+++|+|++++|++|+ |+.|++|++... .......+..|...+.++.|+++ +.++++++.| +.
T Consensus 63 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~ 137 (416)
T 2pm9_A 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GE 137 (416)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence 346889999999999999999998 999999999862 12233345578889999999998 7888888887 99
Q ss_pred EEEEECCCCC------EEEEE----EccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCC----Ccce
Q 014977 116 VIIWDDHQSR------CIGEF----AFRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLAN----LRGL 177 (415)
Q Consensus 116 i~vwd~~~~~------~~~~~----~~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~----~~~~ 177 (415)
|++||+.+++ ....+ .|...|.+++|+|+ +.+++ .|+.|++||+++++.+..+..+.. ...+
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence 9999998886 33333 37889999999998 55555 699999999999999888876521 2245
Q ss_pred EEEecCCCc-eEEEEeCCccC---eEEEEEcCC--cceEEEe-cCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC
Q 014977 178 CCLSHHSST-SVLACPGLQRG---QVRIEHFGL--NMIKLIN-AHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 178 ~~~~~~~~~-~~l~~~g~~dg---~v~i~~~~~--~~~~~~~-~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
.++.+++++ .++++ ++.++ .|++|+... ..+..+. +|...|.+++|+| ++++|++++.|+. |++||++++
T Consensus 218 ~~~~~~~~~~~~l~~-~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~ 295 (416)
T 2pm9_A 218 SVVEWHPKNSTRVAT-ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA 295 (416)
T ss_dssp EEEEECSSCTTEEEE-EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC
T ss_pred EEEEECCCCCCEEEE-EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC
Confidence 666666665 35554 66787 999999875 4566777 8999999999999 9999999999999 999999999
Q ss_pred cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977 250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+.+..+.. |...|.+++|+|++ .+|++++.||.|++|++.+.+..
T Consensus 296 ~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 296 EQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp CEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 99999988 78899999999999 89999999999999999988754
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.9e-32 Score=248.90 Aligned_cols=247 Identities=16% Similarity=0.188 Sum_probs=200.2
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP 113 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~ 113 (415)
...+|.+.|++++|+|++++|++|+ |+.|+||++.+... .....+..|...+.++.|++ ++.++++++.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d----- 80 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD----- 80 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----
Confidence 4678999999999999999999999 99999999986532 23334557888999999998 58888888887
Q ss_pred CeEEEEECCCC---------CEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEe---------
Q 014977 114 TKVIIWDDHQS---------RCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIE--------- 169 (415)
Q Consensus 114 ~~i~vwd~~~~---------~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~--------- 169 (415)
+.|++||+.++ +.+..+. |...|.+++|+|+ +.+++ .|+.|++||+.+++.+..+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999887 4466665 8899999999998 77776 68999999998876554433
Q ss_pred ----ccCCCcceEEEecCCC---ceEEEEeCCccCeEEEEEcCCcc---eEEEecCccceEEEEeCCCC----CEEEEEe
Q 014977 170 ----TLANLRGLCCLSHHSS---TSVLACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDG----LLLATAS 235 (415)
Q Consensus 170 ----~~~~~~~~~~~~~~~~---~~~l~~~g~~dg~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g----~~l~s~s 235 (415)
.+.. .+.++.++|+ +..+++ ++.++.+.+|...... +..+.+|...|.+++|+|++ ++|++++
T Consensus 161 ~~~~~~~~--~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 161 IPPANHLQ--SDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CCCSSCSC--CCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cccCCccc--ceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 2333 4455555554 556665 5678888776655543 55667899999999999998 8999999
Q ss_pred CCCcEEEEEECCCC----------------------------------------------cEEEEEecCCCcccEEEEEe
Q 014977 236 TRGTLIRIFNTVDG----------------------------------------------TRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 236 ~dg~~I~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~l~~ 269 (415)
.||. |++||++.+ +.+..+.+ |...|++++|
T Consensus 238 ~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~ 314 (351)
T 3f3f_A 238 KDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSW 314 (351)
T ss_dssp TTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEE
T ss_pred CCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEE
Confidence 9999 999999875 45556666 7889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|++++|++++.||.|+||++.+++..
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cCCCCEEEEecCCCcEEEEecCcCcch
Confidence 999999999999999999999987643
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-32 Score=251.56 Aligned_cols=247 Identities=14% Similarity=0.146 Sum_probs=201.7
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.|++++|+|++++|++|+ |+.|+||+++.........+..|...+.++.|+++ +.++++++.| +.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~ 80 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK 80 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SC
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CE
Confidence 4678999999999999999999999 99999999985444444456678889999999876 8888898887 99
Q ss_pred EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC-
Q 014977 116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS- 184 (415)
Q Consensus 116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~- 184 (415)
|++||+.+++ .+..+. |...|.+++|+|+ +.+++ .|+.|++||+.++.. ...+..|.. .+.++.++|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT--CEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC--ceEEEEEcCc
Confidence 9999999987 555555 8899999999998 76666 699999999987743 334455655 455555555
Q ss_pred ------------CceEEEEeCCccCeEEEEEcCCc-----ceEEEecCccceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 014977 185 ------------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIF 244 (415)
Q Consensus 185 ------------~~~~l~~~g~~dg~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vw 244 (415)
++.++++ ++.|+.|++|+.... ....+.+|...|.+++|+|+ +++|++++.||. |++|
T Consensus 159 ~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iw 236 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW 236 (379)
T ss_dssp C----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred cccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEE
Confidence 4667766 668999999987642 34567789999999999999 899999999999 9999
Q ss_pred ECCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 245 NTVDGT---RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 245 d~~~~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|+.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 998874 33333333367789999999999999999999999999999654
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-32 Score=259.09 Aligned_cols=247 Identities=13% Similarity=0.186 Sum_probs=198.8
Q ss_pred CCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccC---Ccee-EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEP---FKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 41 ~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
.+|.+.|++++|+| ++++|++|+ |+.|+|||+.+ .... ....+ .|...+.++.|++++..+++++.| +
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----g 133 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD-----G 133 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC-----C
Confidence 78999999999999 999999999 99999999975 2211 11222 577889999999999999999988 9
Q ss_pred eEEEEECC---CCCEEEEEE-------------ccCceeEEE--EcCCeEEEE---eCCeEEEEEcCCceeeeEEec--c
Q 014977 115 KVIIWDDH---QSRCIGEFA-------------FRSDVRSVK--LSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--L 171 (415)
Q Consensus 115 ~i~vwd~~---~~~~~~~~~-------------~~~~i~~l~--~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~--~ 171 (415)
.|++||+. +++.+.... +...+.++. +++++.+++ .|+.|++||+++++.+..+.. |
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 99999984 666555443 234455555 456777777 689999999999999999987 5
Q ss_pred CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEe-cCccceEEEEeC----CCCCEEEEEeCCCcEEEEEE
Q 014977 172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLIN-AHDSHIACFTLT----LDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~-~~~~~i~~l~~s----p~g~~l~s~s~dg~~I~vwd 245 (415)
.. .+.++.+++++.+|++ |+.||.|++|+.+. +.+..+. .|...|.+++|+ |++.+|++++.|+. |++||
T Consensus 214 ~~--~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd 289 (437)
T 3gre_A 214 HG--AVSSICIDEECCVLIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN 289 (437)
T ss_dssp GC--CEEEEEECTTSCEEEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred CC--ceEEEEECCCCCEEEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence 55 5666667777778876 67899999999765 4455665 788899999555 56889999999999 99999
Q ss_pred CCCCcEEEEEecCC------------------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977 246 TVDGTRLQEVRRGV------------------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED 298 (415)
Q Consensus 246 ~~~~~~~~~~~~~~------------------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~ 298 (415)
+++++.+..+..+. |...|++++|+ ++++|++++.||.|++||+.+++....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99999988887532 55678899999 779999999999999999999886543
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-31 Score=254.03 Aligned_cols=287 Identities=9% Similarity=0.050 Sum_probs=224.8
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
..+....|++++++|++|+ |+.|+||++++.... ..+..|...+.++.|++++..+++++.| +.|++||+.+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~ 170 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKD 170 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 4555667899999999999 999999999875443 3455888999999999999999999988 9999999999
Q ss_pred CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC---CCc-------------------ce
Q 014977 124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---NLR-------------------GL 177 (415)
Q Consensus 124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~---~~~-------------------~~ 177 (415)
++.+..+. |...|.+++|+|++..++ .|+.|++||+++++.+..+..+. ..+ .+
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 99988888 899999999999998777 68999999999999988886532 222 22
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEE-ecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCcE-EE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLI-NAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTR-LQ 253 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~-~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~-~~ 253 (415)
.++.+++++.++++ |+.||.|++|+.... .+..+ ..|...|.+++|+|++. +|++++.||. |++||+++++. +.
T Consensus 251 ~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 251 NNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG 328 (420)
T ss_dssp CTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred cceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence 23445678888876 678999999987653 34444 35788999999999999 9999999999 99999998754 66
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS 333 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (415)
.+..+ +...|.++.| +++++|++++.||.|++|++..++........
T Consensus 329 ~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~------------------------------- 375 (420)
T 3vl1_A 329 EFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF------------------------------- 375 (420)
T ss_dssp EEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT-------------------------------
T ss_pred hhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec-------------------------------
Confidence 67654 5668888865 57889999999999999999886543210000
Q ss_pred cccccccccCcccccccceEEEEeCCCceEEEEecCCC----EEEEEEeCCcEEEEEEec
Q 014977 334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQN----TVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~dg~~~~~~~~~ 389 (415)
. .+ ..+....+....++|++++ .+++++.+|.+.+|+++.
T Consensus 376 -----~--~~---------~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 376 -----E--TP---------TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -----T--SC---------EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -----c--Cc---------cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 0 00 0111223455667898883 599999999999998753
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-31 Score=242.01 Aligned_cols=237 Identities=12% Similarity=0.226 Sum_probs=208.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
+|...|.+++|+|++++|++++ ++.|++|++++.+......+..+...+.++.|++++..+++++.+ +.|++||
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d 169 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWD 169 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEe
Confidence 7899999999999999999999 999999999886644444555778889999999999888888887 9999999
Q ss_pred CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+.+++.+..+. |...|.+++|+|++..++ .|+.|++||+++++.+..+.. .. .+.++.+++++.++++ ++.+
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~--~v~~~~~s~~~~~l~~-~~~~ 245 (337)
T 1gxr_A 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAV-GMES 245 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEE-EETT
T ss_pred CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CC--ceEEEEECCCCCEEEE-EcCC
Confidence 99999998887 899999999999998777 689999999999988877753 33 4566777777888876 6689
Q ss_pred CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (415)
+.|++|+........+..|...|.+++|+|++++|++++.||. |++||+.+++.+.... +...|.+++|+|++++|
T Consensus 246 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYI 321 (337)
T ss_dssp SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEE
T ss_pred CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCCCEE
Confidence 9999999988888888999999999999999999999999999 9999999999886554 67789999999999999
Q ss_pred EEEeCCCeEEEEEce
Q 014977 277 AVASDKGTVHIFSLR 291 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~ 291 (415)
++++.||.|++|++.
T Consensus 322 ~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 322 VTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 999999999999974
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-31 Score=273.49 Aligned_cols=283 Identities=13% Similarity=0.168 Sum_probs=236.2
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|.+++|+|++++|++++ +|.|+|||+.++..... +..+...+.++.|++++..+++++.| +.|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 79 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD-----FRI 79 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT-----SEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE--EecCCCcEEEEEEeCCCCEEEEEeCC-----CeE
Confidence 34578999999999999999999999 99999999988665544 34788889999999999999999887 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCC-CceEEE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHS-STSVLA 190 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 190 (415)
++||+.+++.+..+. |...|.+++|+|++..++ .|+.|++||+.++ .....+..|... +.++.++| ++..++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC--EEEEEEETTEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc--EEEEEEEcCCCCEEE
Confidence 999999999999988 899999999999998777 6899999999876 666777777764 45555555 555666
Q ss_pred EeCCccCeEEEEEcCC-cceEEEecCc-cceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 191 CPGLQRGQVRIEHFGL-NMIKLINAHD-SHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~-~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
+ ++.||.|++|+... .....+..+. ..+..++|+| ++.+|++++.||. |++||+.+++.+..+.. |...|.+
T Consensus 158 ~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~~ 233 (814)
T 3mkq_A 158 S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF 233 (814)
T ss_dssp E-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred E-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence 5 67899999998754 4455555554 8999999999 9999999999999 99999999999999987 7789999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (415)
Q Consensus 267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (415)
++|+|++++|++++.||.|++||+.+++...
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~------------------------------------------------- 264 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEK------------------------------------------------- 264 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEE-------------------------------------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------------------------------
Confidence 9999999999999999999999998766321
Q ss_pred ccccceEEEEeCCCceEEEEecCCCE--EEEEEeCCcEEEEEEec
Q 014977 347 SSEWSFAQFHIPEVTHFIAAFGSQNT--VVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~dg~~~~~~~~~ 389 (415)
.+..+......++|++++. +++++.++.+.+|.+..
T Consensus 265 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 265 -------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp -------EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred -------EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 2333335666788888843 67788888888887754
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-31 Score=246.87 Aligned_cols=242 Identities=13% Similarity=0.132 Sum_probs=194.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++.+|++|+ |+.|+|||+.+.+.... +..|...+.++.|+|++..+++++.| +.|+
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~ 143 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-----REIK 143 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-----SCEE
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-----CEEE
Confidence 3578999999999999999999999 99999999998665443 44788899999999999999999988 9999
Q ss_pred EEECCCCCEEEEE----EccCceeEEEEcCCe----------EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977 118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR----------IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 118 vwd~~~~~~~~~~----~~~~~i~~l~~~~~~----------~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 180 (415)
+||+.. ...... .|...|.+++|+|++ .+++ .|+.|++|| ...+....+..|.. .+.++
T Consensus 144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~--~v~~~ 219 (343)
T 2xzm_R 144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES--NVNHL 219 (343)
T ss_dssp EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS--CEEEE
T ss_pred EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc--cceEE
Confidence 999874 333333 267889999999986 4455 699999999 45677777888876 45666
Q ss_pred ecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE--EEec
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--EVRR 257 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~~~~ 257 (415)
+++|++.+|++ |+.|+.|++|+. ..........+...|.+++|+|++.+|+++ .|+. |++||+.+++... .+..
T Consensus 220 ~~s~~g~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 220 SISPNGKYIAT-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EECTTSSEEEE-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECCC
T ss_pred EECCCCCEEEE-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEeec
Confidence 67777888876 678999999997 333333333456779999999999988755 5778 9999998776433 4431
Q ss_pred C---------CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 258 G---------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 258 ~---------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
. .|...|.+++|+|+|++|++|+.||+|++|++++++
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 0 266789999999999999999999999999999875
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=265.00 Aligned_cols=242 Identities=9% Similarity=-0.008 Sum_probs=188.7
Q ss_pred CCCceEEEEEeCCC---------CEEEE-------------------Ee-CCcEEEEEccCCceeE--EEeccCCCeeEE
Q 014977 43 DEIELISVSWNQDY---------GCFAA-------------------GT-SCGFRIYNCEPFKETF--RRDLKSGGFRIV 91 (415)
Q Consensus 43 h~~~V~~l~~sp~g---------~~la~-------------------g~-d~~v~iw~~~~~~~~~--~~~~~~~~~~~~ 91 (415)
+.+.|.+++|+|++ ++||+ ++ |+.|+||++++.+... ...+..+...+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46788888888876 56666 44 6789999998755322 122335566788
Q ss_pred EEeeeCC------eEEEEecCCCCCCCCCeEEEEECCCCCE-----------EEEEE-ccCceeEEEEcCCeEEEE--eC
Q 014977 92 EMLFRCN------ILALVGAGDNSQYPPTKVIIWDDHQSRC-----------IGEFA-FRSDVRSVKLSRDRIVVV--LE 151 (415)
Q Consensus 92 ~~~~~~~------~~~l~s~~~d~~~~~~~i~vwd~~~~~~-----------~~~~~-~~~~i~~l~~~~~~~~~~--~d 151 (415)
.+.|+|+ +.+|++++.| ++|++||+.+++. ...+. |...|.+++|++++.++. .|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D 286 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN 286 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT
T ss_pred EEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC
Confidence 9999986 5689999888 9999999977642 22444 788999999998875554 79
Q ss_pred CeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCc-eEEEEeCCccCeEEEEEcCC-cceEEEecCcc--ceEEEEeCC
Q 014977 152 HKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGL-NMIKLINAHDS--HIACFTLTL 226 (415)
Q Consensus 152 ~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~--~i~~l~~sp 226 (415)
|+|++||+++++ ....+..|...+..+++.+.+++ .+|++ |+.|++|+||+.+. +....+.+|.. .|.+++|+|
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-eccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 999999998764 44567888876655544666666 56665 77999999999765 45556666653 588999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
+++.|++++.|+. |++||++++..+..+.+ |.+.|++++|+|+|++|++|+.||+|++||+..+
T Consensus 366 ~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 366 QIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp TTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 9999999999999 99999999998888887 8889999999999999999999999999998653
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-31 Score=250.84 Aligned_cols=249 Identities=12% Similarity=0.159 Sum_probs=201.8
Q ss_pred ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEec-----------cCCCeeEEEEeeeC-CeEEEE
Q 014977 38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----------KSGGFRIVEMLFRC-NILALV 103 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~l~ 103 (415)
....+|.+.|++++|+| ++++|++|+ ||.|+||++++......... ..+...+.++.|++ ++..++
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 34567999999999999 999999999 99999999987544322211 24788899999999 677888
Q ss_pred ecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe---EEEE---eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977 104 GAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGL 177 (415)
Q Consensus 104 s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~---~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (415)
+++.| +.|++||+.+++.+..+.+...+.++.+.+.+ .+++ .++.|++||+.+++.+..+..|... +
T Consensus 117 s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--v 189 (408)
T 4a11_B 117 SSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE--I 189 (408)
T ss_dssp EEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC--E
T ss_pred EEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc--E
Confidence 88877 99999999999999999999999999999854 3555 6899999999999999888888774 4
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEE---------------ecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLI---------------NAHDSHIACFTLTLDGLLLATASTRGTL 240 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~---------------~~~~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (415)
.++.++|++..++++|+.||.|++|+.+.. .+..+ ..|...|.+++|+|++++|++++.|+.
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 268 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR- 268 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-
Confidence 555556666643334778999999997643 23333 578899999999999999999999999
Q ss_pred EEEEECCCC-----------------------------------------------cEEEEEecCCCcccEEEEEeCCCC
Q 014977 241 IRIFNTVDG-----------------------------------------------TRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 241 I~vwd~~~~-----------------------------------------------~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
|++||+.++ +.+..+.+ |...|.+++|+|++
T Consensus 269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNF 346 (408)
T ss_dssp EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTT
T ss_pred EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCC
Confidence 999998754 34455555 77899999999999
Q ss_pred CEEEEEeCCCeEEEEEceecccC
Q 014977 274 QWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
++|++++.||.|++||+++++..
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TEEEEEETTSCEEEEEECC----
T ss_pred CEEEEECCCCeEEEEeCCCCCcc
Confidence 99999999999999999998754
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=255.87 Aligned_cols=244 Identities=11% Similarity=0.159 Sum_probs=191.6
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce---------eEEEeccCCC------------eeEEEEeeeC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---------TFRRDLKSGG------------FRIVEMLFRC 97 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~---------~~~~~~~~~~------------~~~~~~~~~~ 97 (415)
...|.+.|++++|+|+|++||+|+ ||.|+||++.+.+. .....+..|. ..|.++.|++
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 345788999999999999999999 99999999986542 1223344666 7789999999
Q ss_pred Ce--EEEEecCCCCCCCCCeEEEEECCCCCEE---------------------------------------EEE--EccC
Q 014977 98 NI--LALVGAGDNSQYPPTKVIIWDDHQSRCI---------------------------------------GEF--AFRS 134 (415)
Q Consensus 98 ~~--~~l~s~~~d~~~~~~~i~vwd~~~~~~~---------------------------------------~~~--~~~~ 134 (415)
++ ..+++++.| +.|++||+.+++.. ..+ .|..
T Consensus 104 ~~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 104 QKNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp CCSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred CCCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 87 677777777 99999998764432 122 2888
Q ss_pred ceeEEEEcCCeEEEE--eCCeEEEEEcCC-ceeeeE-------EeccCCCcceEEEecCCCc-eEEEEeCCccCeEEEEE
Q 014977 135 DVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQ-------IETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEH 203 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~--~d~~i~iwd~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~ 203 (415)
.|.+++|+|++.+++ .|+.|++||+.+ ++.+.. +..|.. .+.++.++|++ .++++ |+.||.|++|+
T Consensus 179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s-~~~dg~i~iwd 255 (447)
T 3dw8_B 179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTE--VITAAEFHPNSCNTFVY-SSSKGTIRLCD 255 (447)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTTEEEE-EETTSCEEEEE
T ss_pred ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCc--ceEEEEECCCCCcEEEE-EeCCCeEEEEE
Confidence 999999999998888 799999999984 444442 334555 45666666666 66665 67899999999
Q ss_pred cCCcc-----eEEEecCcc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCC-CcEEEEEecCCCccc--
Q 014977 204 FGLNM-----IKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAE-- 263 (415)
Q Consensus 204 ~~~~~-----~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~-- 263 (415)
..... +..+..|.. .|.+++|+|+|++|++++. +. |++||+++ ++.+..+.. |...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~--~~~~~~ 331 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV--HEYLRS 331 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES--CGGGTT
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec--cccccc
Confidence 77644 577888876 8999999999999999998 98 99999997 888888877 4321
Q ss_pred -------------EEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 264 -------------IYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 264 -------------v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+..++|+|++++|++++.||.|++||+.+++.
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999998765
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-30 Score=248.35 Aligned_cols=274 Identities=14% Similarity=0.215 Sum_probs=220.8
Q ss_pred cCCCCCCce-EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V-~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...+|...| .++.+ ++.+|++|+ |+.|++||+.+.+.... +.+|...+.++.|++++ .+++++.| +.|
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~-~l~s~s~d-----g~i 185 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG-ILVSGSTD-----RTV 185 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECSTT-EEEEEETT-----SCE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE--EeCCCcCEEEEEEcCCC-EEEEEeCC-----CCE
Confidence 456888875 66555 567999999 99999999988665443 45889999999999988 77777777 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEc--CCeEEEE---eCCeEEEEEcCCcee-----------------------eeE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLS--RDRIVVV---LEHKIYVYSFVDLKL-----------------------LHQ 167 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~--~~~~~~~---~d~~i~iwd~~~~~~-----------------------~~~ 167 (415)
++||+.+++.+..+. |...|.+++|+ +++.+++ .|+.|++||+.+++. +..
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999999999988 89999999998 5666666 699999999987653 233
Q ss_pred EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
+.+|.. .+.++.++ +.++++ |+.|+.|++|+.. .+.+..+.+|...|.+++|+|++++|++++.|+. |++||+
T Consensus 266 ~~~~~~--~v~~~~~~--~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~ 339 (464)
T 3v7d_B 266 LRGHMA--SVRTVSGH--GNIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDL 339 (464)
T ss_dssp ECCCSS--CEEEEEEE--TTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEET
T ss_pred ccCccc--eEEEEcCC--CCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEEC
Confidence 444444 45556554 446665 6789999999875 4667788899999999999999999999999999 999999
Q ss_pred CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCC
Q 014977 247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (415)
++++.+..+.. |...|.+++|+ +.+|++++.||.|++||+.+++...
T Consensus 340 ~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----------------------------- 386 (464)
T 3v7d_B 340 ENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----------------------------- 386 (464)
T ss_dssp TTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-----------------------------
T ss_pred CCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-----------------------------
Confidence 99999999988 88899999997 5899999999999999998765321
Q ss_pred CCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
.+. .......++|++++.++++++||.|++|++..
T Consensus 387 ---------------------------~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 387 ---------------------------SYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRS 421 (464)
T ss_dssp ---------------------------EEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred ---------------------------eec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence 111 12344567888887777777799999999865
No 61
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=236.99 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=196.4
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
+++|+||+++ +||+|.|++|+|||+++++......++.|...|.++.|++++.++++++.| +.|++||+++++.
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCcee
Confidence 5779999986 888888999999999998776666667888899999999999999999988 9999999998877
Q ss_pred EEEEE-c-----------------------------------------cCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977 127 IGEFA-F-----------------------------------------RSDVRSVKLSRDRIVVV---LEHKIYVYSFVD 161 (415)
Q Consensus 127 ~~~~~-~-----------------------------------------~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~ 161 (415)
+..+. | ...+..+.+.+++.+++ .|+.|++||+.+
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 66543 2 34456667777777666 689999999987
Q ss_pred ceee----eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe--
Q 014977 162 LKLL----HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-- 235 (415)
Q Consensus 162 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-- 235 (415)
++.. .....+...+....+.+.....+...+++.++.|++|+...........+...+..+.|+|++..+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence 6533 2333444444555555555444445568899999999998888777788899999999999999887654
Q ss_pred CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.|+. |+|||+++++++.++.+ |.+.|++++|+|||++|++++.||+|+|||+.+.+
T Consensus 262 ~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 262 AQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7899 99999999999999998 88899999999999999999999999999997653
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-30 Score=243.31 Aligned_cols=280 Identities=14% Similarity=0.101 Sum_probs=220.8
Q ss_pred CCCCCc--eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 41 DVDEIE--LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 41 ~~h~~~--V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
.+|... +.+++|++ ..+++++ |+.|++|++++......... .+...+.++.|++++..+++++.| +.|+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~ 159 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGN-----GLVD 159 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCC-----CeEE
Confidence 355554 45566665 3455555 99999999998766554443 478889999999999999998887 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
+||+.+++.+..+. |...|.+++|+++..... .|+.|++||++ ....+..+..|.. .+.++.+++++.++++ |+
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s-~~ 236 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLAS-GG 236 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-EE
T ss_pred EEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC--CeeEEEEcCCCCEEEE-Ee
Confidence 99999999999887 899999999976543333 79999999998 4566777777777 4556666667778876 66
Q ss_pred ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC-EEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977 195 QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-LLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (415)
Q Consensus 195 ~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (415)
.|+.|++|+... ..+..+..|...|.+++|+|++. ++++++ .|+. |++||+.+++.+..+. +...|.+++|+
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s 312 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWS 312 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEC
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEEC
Confidence 899999998775 56667888999999999999774 666665 7999 9999999999998887 45689999999
Q ss_pred CCCCEEEEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977 271 PNVQWLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (415)
Q Consensus 271 pdg~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (415)
|++++|++++ .||.|++||+.+++...
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--------------------------------------------------- 341 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTK--------------------------------------------------- 341 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEEEE---------------------------------------------------
T ss_pred CCCCeEEEEeecCCCcEEEEecCCcccee---------------------------------------------------
Confidence 9999999954 89999999998865321
Q ss_pred ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
...+.-....+..++|+++ ..|++++.||.|++|++..
T Consensus 342 ---~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 342 ---QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ---EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 0112223345667899998 6677788899999999975
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.6e-31 Score=244.46 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=198.7
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKV 116 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i 116 (415)
..+|.+.|++++|+|++++|++++ |+.|+||++.+... .....+..+...+.++.|++++. .+++++.| +.|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-----GEI 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----SCE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-----CeE
Confidence 458999999999999999999999 99999999987651 11122237788899999999998 88888887 999
Q ss_pred EEEEC-CCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC---------ceeeeEEeccCCCcceEEEe
Q 014977 117 IIWDD-HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD---------LKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 117 ~vwd~-~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~ 181 (415)
++||+ .+++...... |...|.+++|+| +..++ .|+.|++||+.+ ++.+..+. +.. .+.++.
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~--~v~~~~ 157 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN--KIFTMD 157 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC--CEEEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC--ceEEEE
Confidence 99999 8887755555 889999999999 65555 699999999987 66666655 444 566677
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCC-c---ceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC------c
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGL-N---MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG------T 250 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~---~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~------~ 250 (415)
+++++ +++ ++.++.|++|+... . .......|...+.+++|+| ++++|++++.||. |++|++... +
T Consensus 158 ~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 158 TNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSS 233 (342)
T ss_dssp ECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCT
T ss_pred ecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccccc
Confidence 77766 444 56899999999876 2 2234456888999999999 9999999999999 999999887 7
Q ss_pred EEEEEecCC-------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 251 RLQEVRRGV-------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 251 ~~~~~~~~~-------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
....+..+. |...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 777887731 1338999999999999999999999999999887643
No 64
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-30 Score=241.17 Aligned_cols=287 Identities=10% Similarity=0.102 Sum_probs=224.3
Q ss_pred CCccCCCCCCceEEEEEeCC---CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~---g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
......+|.+.|++++|+|+ |++|++|+ |+.|+||++++.+......+..|...+.++.|++++..+++++.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--- 107 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD--- 107 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---
Confidence 34557899999999999999 69999999 999999999874444434455788999999999999999999887
Q ss_pred CCCeEEEEECCCCCEEEEEEccCceeEEEE--cCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 112 PPTKVIIWDDHQSRCIGEFAFRSDVRSVKL--SRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
+.|++||+.+++.+....|...|.+++| ++++.+++ .|+.|++||+++++.+..+..+. .+.++.+.++
T Consensus 108 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~- 181 (368)
T 3mmy_A 108 --KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIYP- 181 (368)
T ss_dssp --SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEETT-
T ss_pred --CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecCC-
Confidence 9999999999998887789999999999 89988777 68999999999999988887665 4555565554
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEE---ecCccceEEEEeCCCCCE----EEEEeCCCcEEEEEECCCC---cEEEEEe
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLI---NAHDSHIACFTLTLDGLL----LATASTRGTLIRIFNTVDG---TRLQEVR 256 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~----l~s~s~dg~~I~vwd~~~~---~~~~~~~ 256 (415)
.+++ +..++.+.+|+......... ..+...+.++.+.+++.. +++++.|+. |++||++.. +.+..+.
T Consensus 182 -~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 182 -MAVV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp -EEEE-EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEE
T ss_pred -eeEE-EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeee
Confidence 3333 45789999998876433222 123345555665554443 999999999 999999887 5566676
Q ss_pred cCCCcc------------cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977 257 RGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (415)
Q Consensus 257 ~~~~~~------------~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (415)
. |.. .|.+++|+|++++|++++.||.|++||+++++...
T Consensus 259 ~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------- 309 (368)
T 3mmy_A 259 C--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK--------------------------- 309 (368)
T ss_dssp C--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---------------------------
T ss_pred e--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---------------------------
Confidence 6 444 69999999999999999999999999999876432
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCCC
Q 014977 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG 392 (415)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~ 392 (415)
.+.........++|+++ ..|++++.||....|.+...+.
T Consensus 310 -----------------------------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 310 -----------------------------TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp -----------------------------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred -----------------------------EecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence 11122345677899998 6788888888777766554333
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.4e-30 Score=234.53 Aligned_cols=241 Identities=14% Similarity=0.216 Sum_probs=203.2
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++|+ |+.|++||+++.+.... +..+...+.++.|++++..+++++.| +.|+
T Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~ 132 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVR 132 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC-----CcEE
Confidence 4568999999999999999999999 99999999998665443 44788889999999999999999988 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
+||+++++.+..+. |...|.+++|+|++.+++ .|+.|++||+.+++.+..+..... ..+..+.+++++.++++ +
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~ 210 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILA-A 210 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEEE-E
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEEE-E
Confidence 99999999998887 889999999999998877 699999999999888777643322 23455666777778876 6
Q ss_pred CccCeEEEEEcCC-cceEEEecCccceE---EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 194 LQRGQVRIEHFGL-NMIKLINAHDSHIA---CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~---~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+.|+.|++|+... +.+..+.+|..... .....+++.+|++++.||. |++||+.+++.+..+.+ |...|.+++|
T Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~ 287 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVISTAC 287 (312)
T ss_dssp ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEEEEEE
T ss_pred cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEEEEee
Confidence 6899999998765 45667777765433 2333468899999999999 99999999999999988 7889999999
Q ss_pred CCCCCEEEEEe--CCCeEEEEEce
Q 014977 270 SPNVQWLAVAS--DKGTVHIFSLR 291 (415)
Q Consensus 270 spdg~~l~s~s--~dg~i~vwd~~ 291 (415)
+|++++|++++ .|++|++|+.+
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999987 69999999964
No 66
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-31 Score=251.04 Aligned_cols=247 Identities=12% Similarity=0.183 Sum_probs=200.3
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY 111 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~ 111 (415)
....|...|.+++|+|+|++|++|+ |+.++||++.... ......+.+|...+.++.|.++ ...+++++.|
T Consensus 103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D--- 179 (380)
T 3iz6_a 103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD--- 179 (380)
T ss_dssp EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT---
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC---
Confidence 3467899999999999999999999 9999999986422 1122234577778888888885 4567888887
Q ss_pred CCCeEEEEECCCCCEEEEEE------ccCceeEEEEcC-CeEEEE---eCCeEEEEEcC-CceeeeEEeccCCCcceEEE
Q 014977 112 PPTKVIIWDDHQSRCIGEFA------FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-DLKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~~~------~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 180 (415)
+.|++||+.+++.+..+. |...|.++.+++ ++.+++ .|+.|++||++ ..+.+..+.+|...+..+
T Consensus 180 --~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v-- 255 (380)
T 3iz6_a 180 --QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV-- 255 (380)
T ss_dssp --SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE--
T ss_pred --CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE--
Confidence 999999999999988872 678899999987 666666 69999999997 457778888888755544
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCc-------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD-------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (415)
.++|++.+|++ |+.|++|++|+... ..+..+..+. ..+.+++|+|+|++|++|+.||. |++||+.+++.+
T Consensus 256 ~~~p~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~ 333 (380)
T 3iz6_a 256 KFFPDGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMV 333 (380)
T ss_dssp EECTTSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEE
T ss_pred EEecCCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceE
Confidence 45556677776 77999999999775 4444454332 24899999999999999999999 999999999988
Q ss_pred EEEec--CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 253 QEVRR--GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 253 ~~~~~--~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
..+.. ..|.+.|.+++|+|+|++|++|+.|++|+||++...+
T Consensus 334 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 77732 2278899999999999999999999999999998765
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=257.30 Aligned_cols=280 Identities=14% Similarity=0.180 Sum_probs=219.5
Q ss_pred CCCceEEEEEeCCCC-EEEEE----------e-CCcEEEEEccCCcee-EEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977 43 DEIELISVSWNQDYG-CFAAG----------T-SCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNS 109 (415)
Q Consensus 43 h~~~V~~l~~sp~g~-~la~g----------~-d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 109 (415)
+...|.+++|+|+++ +|++| + |+.|+||++.+.... ....+ .+...+.++.|++++.++++++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d- 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN- 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS-
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC-
Confidence 345789999999997 99998 7 899999999875432 11122 577889999999999999999887
Q ss_pred CCCCCeEEEEECCC----CCEEEEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCce------eeeE---Eecc
Q 014977 110 QYPPTKVIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLK------LLHQ---IETL 171 (415)
Q Consensus 110 ~~~~~~i~vwd~~~----~~~~~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~------~~~~---~~~~ 171 (415)
+.|++||+.+ .+.+..+. |...|.+++|+|+ +.+++ .|+.|++||+.+++ .... +..|
T Consensus 89 ----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 89 ----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp ----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred ----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 9999999987 35666666 8999999999998 66666 68999999998876 3322 2445
Q ss_pred CCCcceEEEecCCC-ceEEEEeCCccCeEEEEEcCC-cceEEEecC------ccceEEEEeCCCC-CEEEEEeCCC---c
Q 014977 172 ANLRGLCCLSHHSS-TSVLACPGLQRGQVRIEHFGL-NMIKLINAH------DSHIACFTLTLDG-LLLATASTRG---T 239 (415)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~------~~~i~~l~~sp~g-~~l~s~s~dg---~ 239 (415)
...+. ++.++++ +.++++ ++.|+.|++|+... +.+..+..+ ...|.+++|+|++ .+|++++.|+ .
T Consensus 165 ~~~v~--~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 165 VDEVI--SLAWNQSLAHVFAS-AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp SCCCC--EEEECSSCTTEEEE-ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCCee--EEEeCCCCCcEEEE-EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 55444 4555555 445655 67899999999765 455666665 7889999999997 6899999998 9
Q ss_pred EEEEEECCCC-cEEEEEe-cCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCC
Q 014977 240 LIRIFNTVDG-TRLQEVR-RGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (415)
Q Consensus 240 ~I~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (415)
|++||++++ +.+..+. . |...|.+++|+| ++++|++++.||.|++||+++++...
T Consensus 242 -i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~------------------- 299 (416)
T 2pm9_A 242 -ILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS------------------- 299 (416)
T ss_dssp -CCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-------------------
T ss_pred -EEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-------------------
Confidence 999999986 5566666 5 778999999999 99999999999999999998876431
Q ss_pred CCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEecC
Q 014977 317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPV 390 (415)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~~ 390 (415)
.+......+..++|+++ ..+++++.||.|++|++...
T Consensus 300 -------------------------------------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 300 -------------------------------------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -------------------------------------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -------------------------------------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 23333345566899997 46777777999999999763
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.5e-30 Score=274.53 Aligned_cols=244 Identities=13% Similarity=0.177 Sum_probs=210.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|.+.|++++|+|+|++|++|+ |+.|+||++.+.+.... +..|...+.++.|++++.++++++.| +.|+
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~ 682 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD--IKAHEDEVLCCAFSSDDSYIATCSAD-----KKVK 682 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CeEE
Confidence 4568999999999999999999999 99999999998766554 44788999999999999999999988 9999
Q ss_pred EEECCCCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+||+.+++.+..+. |...|.+++|+|+ +.+++ .|+.|++||+.+++.+..+.+|... +.++.+++++.++++
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSPDDELLAS 760 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC--EEEEEECSSTTEEEE
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC--EEEEEEecCCCEEEE
Confidence 99999999999988 8999999999994 44555 6899999999999999999888874 445555566677776
Q ss_pred eCCccCeEEEEEcCCcc-e------------------------------------------------------EEE-ecC
Q 014977 192 PGLQRGQVRIEHFGLNM-I------------------------------------------------------KLI-NAH 215 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~-~------------------------------------------------------~~~-~~~ 215 (415)
++.||.|++|+..... . ..+ .+|
T Consensus 761 -~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 761 -CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp -EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred -EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 6689999999865321 1 111 267
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
...+.+++|+|++.++++++.|+. |++||+.++..+..+.+ |...|.+++|+|+|++|++++.||.|++|++.+...
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 888999999999999999999999 99999999999988887 888999999999999999999999999999987654
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.7e-30 Score=254.18 Aligned_cols=284 Identities=11% Similarity=0.109 Sum_probs=219.4
Q ss_pred cCCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCC-eEEEEecCCCCCCC
Q 014977 39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCN-ILALVGAGDNSQYP 112 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~s~~~d~~~~ 112 (415)
...+|...|.+++|+|+++ +|++++ |+.|++||+.+.+.... +..+.. .+.++.|+++ +..+++++.|
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 228 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD---- 228 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT----
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC----
Confidence 4568999999999999998 788888 99999999987665443 446666 8999999999 9999998887
Q ss_pred CCeEEEEECCCCCEEEEE-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC------------
Q 014977 113 PTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA------------ 172 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~------------ 172 (415)
+.|++||+.+++.+..+ .|...|.+++|+ ++.+++ .|+.|++||+.+++.+..+..+.
T Consensus 229 -g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 229 -RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp -CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred -CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 99999999999999998 688999999999 887776 58999999998777665554331
Q ss_pred ---------------------------------CCc-------------------------------ceEEEecCCC---
Q 014977 173 ---------------------------------NLR-------------------------------GLCCLSHHSS--- 185 (415)
Q Consensus 173 ---------------------------------~~~-------------------------------~~~~~~~~~~--- 185 (415)
..+ .+.++.+.+.
T Consensus 307 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l 386 (615)
T 1pgu_A 307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 386 (615)
T ss_dssp EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence 000 0111111101
Q ss_pred ---------------------------------------------------------------------ceEEEEeCCc-
Q 014977 186 ---------------------------------------------------------------------TSVLACPGLQ- 195 (415)
Q Consensus 186 ---------------------------------------------------------------------~~~l~~~g~~- 195 (415)
+.++++ ++.
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 465 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEE 465 (615)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EETT
T ss_pred EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eecC
Confidence 112222 223
Q ss_pred cCeEEEEEcCCcce--EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC--
Q 014977 196 RGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-- 271 (415)
Q Consensus 196 dg~v~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-- 271 (415)
|+.|++|+...... ..+..|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+... |...|++++|+|
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAE 543 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC
T ss_pred CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCcc
Confidence 56666666554433 445678899999999999999999999999 999999999998777643 677999999999
Q ss_pred --------CCCEEEEEeCCCeEEEEEceecc-cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccccc
Q 014977 272 --------NVQWLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342 (415)
Q Consensus 272 --------dg~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (415)
++++|++++.||.|++||++++. ...
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------------------- 578 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------------------------------------- 578 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEE---------------------------------------------
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceech---------------------------------------------
Confidence 99999999999999999998874 211
Q ss_pred CcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
.+..+...+..++|++++.|++++.||.|++|+++.
T Consensus 579 -----------~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 -----------ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp -----------ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred -----------hhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 111122456778999996688888899999999864
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.1e-30 Score=242.45 Aligned_cols=275 Identities=15% Similarity=0.139 Sum_probs=223.3
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
.++.|+|+++ .+||+|.|+.|+|||..+++......++.+...|.+++|++++.++++|+.| +.|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCc
Confidence 3567999976 5899988999999999998766666666788899999999999999999988 999999999999
Q ss_pred EEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977 126 CIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202 (415)
Q Consensus 126 ~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~ 202 (415)
.+..+. |...+.++.+++.-.... .|+.+++||.... ..+..+..|.. .+..+.+.+++.++++ ++.|+.+++|
T Consensus 181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--~~~~~~~~~~g~~l~s-~~~D~~v~i~ 257 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLAS-GGNDNLVNVW 257 (420)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc--ceeeeeecCCCCeeee-eeccccceEE
Confidence 999888 899999999876543333 7999999998764 45566777776 4556666667778876 6689999998
Q ss_pred EcCCc-----ceEEEecCccceEEEEeCCCCC-EEEE--EeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 203 HFGLN-----MIKLINAHDSHIACFTLTLDGL-LLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 203 ~~~~~-----~~~~~~~~~~~i~~l~~sp~g~-~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
+.... .+.....|...|.+++|+|++. ++++ |+.|+. |++||+.+++.+..+.. ...+.++.|+|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~ 333 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSPHYK 333 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEETTTT
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecCCCC
Confidence 87542 3566778999999999999664 5555 457999 99999999999988875 35789999999999
Q ss_pred EEEEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977 275 WLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF 352 (415)
Q Consensus 275 ~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (415)
.|++++ .|+.|+|||+.+++...
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~------------------------------------------------------- 358 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVA------------------------------------------------------- 358 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEE-------------------------------------------------------
T ss_pred eEEEEEecCCCEEEEEECCCCcEEE-------------------------------------------------------
Confidence 988765 78999999998877542
Q ss_pred EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.++-+.+.+..++|+|+ ..|++++.||.|++|++..
T Consensus 359 -~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 359 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp -EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 22223356777899998 6788888899999999865
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-30 Score=258.36 Aligned_cols=240 Identities=11% Similarity=0.117 Sum_probs=203.5
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCC----ceeEEEeccCCCee-EEEEeeeC--CeEEEEecCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPF----KETFRRDLKSGGFR-IVEMLFRC--NILALVGAGDNSQYP 112 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~----~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~s~~~d~~~~ 112 (415)
...|.+.|.+++|+|++++|++++++.|+||++++. +.... +..|... +.++.|+| ++.++++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~sp~~~~~~l~s~~~d---- 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ--FTGHGSSVVTTVKFSPIKGSQYLCSGDES---- 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEE--ECTTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred CCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceE--EecCCCceEEEEEECcCCCCCEEEEecCC----
Confidence 346889999999999999999999999999999876 44333 4578888 99999999 99999999988
Q ss_pred CCeEEEEECCCC--------CEEEEEE-ccCceeEEEEcCCeEEEE---eC----CeEEEEEcCCceeeeEEeccCCCcc
Q 014977 113 PTKVIIWDDHQS--------RCIGEFA-FRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 113 ~~~i~vwd~~~~--------~~~~~~~-~~~~i~~l~~~~~~~~~~---~d----~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
+.|++||+.++ +.+..+. |...|.+++|+|++.+++ .+ +.|++|| .++.+..+..|...
T Consensus 88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-- 162 (615)
T 1pgu_A 88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-- 162 (615)
T ss_dssp -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC--
T ss_pred -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc--
Confidence 99999999754 5666666 889999999999999888 23 5788887 56777788877774
Q ss_pred eEEEecCCCce-EEEEeCCccCeEEEEEcCC-cceEEEecCcc---ceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCc
Q 014977 177 LCCLSHHSSTS-VLACPGLQRGQVRIEHFGL-NMIKLINAHDS---HIACFTLTLD-GLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 177 ~~~~~~~~~~~-~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~---~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
+.++.+++++. .++ +++.|+.|++|+... +.+..+..|.. .|.+++|+|+ +++|++++.|+. |++||+.+++
T Consensus 163 v~~~~~~~~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~ 240 (615)
T 1pgu_A 163 INACHLKQSRPMRSM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGE 240 (615)
T ss_dssp EEEEEECSSSSCEEE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCC
T ss_pred EEEEEECCCCCcEEE-EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCC
Confidence 55555566665 444 477899999998654 56677888998 9999999999 999999999999 9999999999
Q ss_pred EEEEE-e---cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 251 RLQEV-R---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 251 ~~~~~-~---~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.+..+ . . |...|.+++|+ ++++|++++.||.|++||+++++.
T Consensus 241 ~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 241 FLKYIEDDQEP--VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEECCBTTBC--CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EeEEecccccc--cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 99888 4 4 78899999999 999999999999999999988764
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=8.3e-31 Score=243.94 Aligned_cols=238 Identities=13% Similarity=0.169 Sum_probs=198.6
Q ss_pred CCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCe
Q 014977 42 VDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 42 ~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~ 115 (415)
.|...|++++|+|+ +.+|++|+ |+.|++||+.+.+.... +..+...+.++.|++ ++..+++++.| +.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~ 139 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD-----HA 139 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT-----SC
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC-----Ce
Confidence 47889999999999 67999999 99999999998665444 447888999999999 88889998887 99
Q ss_pred EEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec------------------
Q 014977 116 VIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET------------------ 170 (415)
Q Consensus 116 i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~------------------ 170 (415)
|++||+.+++.+..+ .|...|.+++|+|++..++ .|+.|++||+.+++....+..
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 999999999999988 3899999999999998877 689999999988765544432
Q ss_pred ----------cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---------------cceEEEecCccceEEEEeC
Q 014977 171 ----------LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACFTLT 225 (415)
Q Consensus 171 ----------~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---------------~~~~~~~~~~~~i~~l~~s 225 (415)
|...+..+++. +.++++ ++.|+.|++|+... ..+..+..|...|.+++|+
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~----~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL----GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE----TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred ccCccccccCCcceEEEEEEc----CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 56555555554 335655 67899999998764 2366778899999999999
Q ss_pred CC--CCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 226 LD--GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 226 p~--g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
|+ +++|++++.||. |++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus 295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 295 MDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99 999999999999 9999999875 445677643478999999999999999999999999999864
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=4.1e-30 Score=233.24 Aligned_cols=247 Identities=12% Similarity=0.119 Sum_probs=193.0
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--CCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI 154 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i 154 (415)
+.+|...|.+++|++++..|++++.| +.|++||+.. .+.+..+. |...|.+++|+++ +.+++ .|++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 44788899999999999999999988 9999999874 36677777 9999999999863 66666 69999
Q ss_pred EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCC--
Q 014977 155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLD-- 227 (415)
Q Consensus 155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~-- 227 (415)
++||+.+++ .+..+..|...+..++++++..+.+|++ ++.|+.|++|+.... ....+.+|...|.+++|+|+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 999998764 4556666777555555555433667765 678999999987653 24667899999999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCC---CEEEEEeCCCeEEEEE
Q 014977 228 -----------GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNV---QWLAVASDKGTVHIFS 289 (415)
Q Consensus 228 -----------g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s~dg~i~vwd 289 (415)
+++|++|+.|+. |+|||+++++ ....+.+ |...|.+++|+|++ .+|++++.|++|+|||
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -----------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 579999999999 9999998776 5566776 88899999999985 8999999999999999
Q ss_pred ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS 369 (415)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (415)
++++.... . ...+. . .-....+..++|++
T Consensus 236 ~~~~~~~~-----------------------------------~-----~~~~~----~-------~~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 236 QDNEQGPW-----------------------------------K-----KTLLK----E-------EKFPDVLWRASWSL 264 (297)
T ss_dssp ESSTTSCC-----------------------------------E-----EEESS----S-------SCCSSCEEEEEECS
T ss_pred eCCCCCcc-----------------------------------c-----eeeee----c-------ccCCCcEEEEEECC
Confidence 97753210 0 00000 0 00124566789999
Q ss_pred C-CEEEEEEeCCcEEEEEEec
Q 014977 370 Q-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 370 ~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+ +.|++++.||.|++|+...
T Consensus 265 ~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCEEEEETTSCEEEEEECT
T ss_pred CCCEEEEEcCCCcEEEEEECC
Confidence 8 6778888899999999875
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=6.7e-30 Score=241.85 Aligned_cols=246 Identities=12% Similarity=0.117 Sum_probs=196.7
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..|...|.+++|+|++++|++|+ ||.|++|++++.+.... +..+...+.++.|+++ .+++++.| +.|++|
T Consensus 131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~~~~d-----g~i~i~ 201 (401)
T 4aez_A 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT--MAGHQARVGCLSWNRH--VLSSGSRS-----GAIHHH 201 (401)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEETT--EEEEEETT-----SEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE--ecCCCCceEEEEECCC--EEEEEcCC-----CCEEEE
Confidence 34889999999999999999999 99999999988665444 4478888999999654 66677776 999999
Q ss_pred ECC-CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe-C
Q 014977 120 DDH-QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP-G 193 (415)
Q Consensus 120 d~~-~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g 193 (415)
|+. .+..+..+. |...|.+++|+|++.+++ .|+.|++||+.+++.+..+..|...+..++++++... ++++. |
T Consensus 202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-ll~~~~g 280 (401)
T 4aez_A 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN-LLATGGG 280 (401)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT-EEEEECC
T ss_pred ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC-EEEEecC
Confidence 998 456666666 899999999999998887 5899999999999999888888876666666654433 33332 3
Q ss_pred CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE--eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
+.|+.|++|+...........+...|.+++|+|++++|+++ +.||. |++||+.+++.........|...|.+++|+|
T Consensus 281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence 48999999997654443334577899999999999999985 48999 9999999876655433222788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccCC
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
++++|++++.||.|++|++.+++...
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCEEEEEeCCCcEEEEECCCCcccc
Confidence 99999999999999999999987653
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=2e-29 Score=240.03 Aligned_cols=245 Identities=12% Similarity=0.141 Sum_probs=199.5
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|...|++|+|+|+|++||+|+ |+.|+|||+++.+.+.. +..|...+.++.+++ ..+++++.| +.+++
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~--~~l~sgs~d-----~~i~~ 213 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLSWNS--YILSSGSRS-----GHIHH 213 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEET--TEEEEEETT-----SEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeCCCCceEEEeeCC--CEEEEEeCC-----CceeE
Confidence 357888999999999999999999 99999999998765544 447888888887765 467777777 99999
Q ss_pred EECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee----eeEEeccCCCcceEEEecCCCceEE
Q 014977 119 WDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL----LHQIETLANLRGLCCLSHHSSTSVL 189 (415)
Q Consensus 119 wd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 189 (415)
||.... ..+..+. |...+..+.+++++..++ .|+.+++|+..+++. +.....+...+..+++.+.....+.
T Consensus 214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 998765 4555566 899999999999999888 699999999977643 3455566665555666665544444
Q ss_pred EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
..+|+.|++|++|+...........+...+.++.|+|+++.|++++ .|+. |+|||+.+++++.++.+ |.+.|+++
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l 370 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSL 370 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEE
Confidence 4457789999999987655544445567889999999999888765 7899 99999999999999998 88899999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|+|||++|++|+.|++|+|||+.+..+.
T Consensus 371 ~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 371 TMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 99999999999999999999999876543
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=2.8e-30 Score=243.53 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=202.6
Q ss_pred ccCCCCCCceEEEEEeCC----C---CEEEEEe-CCcEEEEEccCCce-----eEEEeccCC-----CeeEEEEeee---
Q 014977 38 AFSDVDEIELISVSWNQD----Y---GCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSG-----GFRIVEMLFR--- 96 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~----g---~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~--- 96 (415)
....+|...|.+++|+|+ + ++|++++ |+.|++|++.+.+. ... +..+ ...+.++.|+
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeecc
Confidence 345689999999999999 9 9999999 99999999987553 333 3345 4889999999
Q ss_pred -CCeEE-EEecCCCCCCCCCeEEEEECCC------CCEEE-----EEE--------ccCceeEEEEcCCeEEEE---eCC
Q 014977 97 -CNILA-LVGAGDNSQYPPTKVIIWDDHQ------SRCIG-----EFA--------FRSDVRSVKLSRDRIVVV---LEH 152 (415)
Q Consensus 97 -~~~~~-l~s~~~d~~~~~~~i~vwd~~~------~~~~~-----~~~--------~~~~i~~l~~~~~~~~~~---~d~ 152 (415)
+++.. +++++.| +.|++||+.+ ++.+. .+. |...|.+++|+|++ +++ .|+
T Consensus 134 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg 207 (397)
T 1sq9_A 134 DRLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG 207 (397)
T ss_dssp ----CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred CCCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence 99988 8888887 9999999988 65554 553 68899999999999 666 689
Q ss_pred eEEEEEcCCceeeeEEec---c---CCCcceEEEecCCCceEEEEeCCcc---CeEEEEEcC-CcceEEEec--------
Q 014977 153 KIYVYSFVDLKLLHQIET---L---ANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFG-LNMIKLINA-------- 214 (415)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~-~~~~~~~~~-------- 214 (415)
.|++||+++++.+..+.. | .. .+.++.+++++.+|++ ++.| +.|++|+.. .+.+..+..
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~--~i~~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 284 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSN--SIRSVKFSPQGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCC--CEEEEEECSSTTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred cEEEEECCCCceeEEEeccccccccCC--ccceEEECCCCCEEEE-EecCCCCceEEEEECCCCcccceeccCccccccc
Confidence 999999999999998887 6 55 4556666667778876 6678 999999865 566777887
Q ss_pred -----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe------cCCC---------------cccEEEEE
Q 014977 215 -----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR------RGVD---------------RAEIYSIA 268 (415)
Q Consensus 215 -----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~------~~~~---------------~~~v~~l~ 268 (415)
|...|.+++|+|++++|++++.|+. |++||+++++.+..+. . | ...|.+++
T Consensus 285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~~~~ 361 (397)
T 1sq9_A 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDVK 361 (397)
T ss_dssp -CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCEEEEE
T ss_pred ccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCccc--chhhhhccccccccccCCceeEEE
Confidence 9999999999999999999999999 9999999999999998 5 5 78999999
Q ss_pred eCCCC----------CEEEEEeCCCeEEEEEceecc
Q 014977 269 LSPNV----------QWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 269 ~spdg----------~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|+|++ ++|++++.||.|++|++++++
T Consensus 362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 362 FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred eccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99998 799999999999999998864
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.7e-29 Score=240.32 Aligned_cols=279 Identities=11% Similarity=0.216 Sum_probs=217.3
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|...|.+++| ++++|++|+ |+.|++||+.+.+.... +..|...+.++.| ++..+++++.| +.|++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~~~l~sg~~d-----g~i~v 197 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSD-----STVRV 197 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETT-----SCEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CCCEEEEEcCC-----CeEEE
Confidence 4567788998877 789999999 99999999988665444 4478888999988 55677888877 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee---eEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
||+.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++.. ..+..|.. .+.++.++ +.++++ |
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s-~ 272 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFD--DKYIVS-A 272 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEE--TTEEEE-E
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC--cEEEEEeC--CCEEEE-E
Confidence 9999999999887 899999999987633333 7999999999887655 45566666 44555553 446665 6
Q ss_pred CccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977 194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (415)
Q Consensus 194 ~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (415)
+.||.|++|+.. ++.+..+.+|...|.++++ ++.+|++|+.||. |++||+++++.+..+.+ |...|.+++| +
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~ 345 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--D 345 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--C
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--c
Confidence 689999999865 4667888999999999999 5689999999999 99999999999999988 8889999999 7
Q ss_pred CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF 352 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (415)
+.+|++|+.||.|++||+.+++....... ....
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------------------------------------------~~~~ 378 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAG-----------------------------------------------TLCL 378 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTT-----------------------------------------------TTEE
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcccccc-----------------------------------------------chhe
Confidence 89999999999999999998764310000 0001
Q ss_pred EEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 353 AQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
..+....+.+..++| ....+++++.||.|++|++..
T Consensus 379 ~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 379 RTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred eeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence 122223344555677 337788888999999999976
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.6e-30 Score=235.73 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=191.1
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE-ccCceeEEEEcC--CeEEEE---eCCeE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKI 154 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i 154 (415)
+.+|...|.++.|++++..|++++.| +.|++||+.+++ .+..+. |...|.+++|++ ++.+++ .|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 45788899999999999999999988 999999998875 355666 899999999986 356665 69999
Q ss_pred EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCccceEEEEeCCC-
Q 014977 155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLD- 227 (415)
Q Consensus 155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~~sp~- 227 (415)
++||+++++ .+..+..|...+..++++++.++.+|++ |+.|+.|++|+..... ...+.+|...+.+++|+|+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 999998763 5566777887777777776655677776 7799999999887542 2345678899999999997
Q ss_pred ----------------CCEEEEEeCCCcEEEEEECCCC---cEEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCe
Q 014977 228 ----------------GLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGT 284 (415)
Q Consensus 228 ----------------g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~ 284 (415)
+++|++++.|+. |++||++.+ +.+..+.+ |...|.+++|+|++ .+|++++.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred CCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 478999999999 999999765 35566666 88899999999987 89999999999
Q ss_pred EEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 014977 285 VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI 364 (415)
Q Consensus 285 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (415)
|+||++++..... ... ..+.-....+..
T Consensus 240 v~iw~~~~~~~~~-------------------------------------------~~~---------~~~~~~~~~v~~ 267 (316)
T 3bg1_A 240 VFIWTCDDASSNT-------------------------------------------WSP---------KLLHKFNDVVWH 267 (316)
T ss_dssp EEEEECSSTTCCC-------------------------------------------CBC---------CEEEECSSCEEE
T ss_pred EEEEEccCccccc-------------------------------------------hhh---------hhhhcCCCcEEE
Confidence 9999998743210 000 011112356778
Q ss_pred EEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 365 AAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 365 ~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
++|+|+ +.|++++.||.|++|....
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 899998 6788888899999999875
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=3.2e-28 Score=234.60 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=194.6
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee--CCeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.|.+++|+|++ +|++|+ |+.|++||+++.+.... +..|...+.++.+. +++..+++++.| +.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s~d-----~~ 228 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRD-----NT 228 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEEESSSCEEEEEEETT-----SC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE--ECCCCCccEEEEEecCCCCCEEEEEcCC-----Cc
Confidence 346899999999999988 888888 99999999998665443 44677778777777 678899999988 99
Q ss_pred EEEEECCCCCE-----------------------EEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec
Q 014977 116 VIIWDDHQSRC-----------------------IGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET 170 (415)
Q Consensus 116 i~vwd~~~~~~-----------------------~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~ 170 (415)
|++||+.+++. +..+. |...+.++....+-...+ .|+.|++||+.+++.+..+..
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99999987753 23333 677777775443333333 699999999999999999988
Q ss_pred cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
|... +.++.+++++.++++ |+.||.|++|+.. ++.+..+.+|...|.+++|+ +.+|++++.||. |++||+.++
T Consensus 309 ~~~~--v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~ 382 (464)
T 3v7d_B 309 HTDR--IYSTIYDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY 382 (464)
T ss_dssp CSSC--EEEEEEETTTTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC
T ss_pred CCCC--EEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC
Confidence 8774 455555566667776 6789999999974 67788899999999999997 579999999999 999999998
Q ss_pred cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+....+. +...+..++|++++++|++++ ||.|++||+++++..
T Consensus 383 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 383 SRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp CEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred ceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 8776665 455678889999999999998 899999999998754
No 80
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=236.69 Aligned_cols=239 Identities=11% Similarity=0.102 Sum_probs=190.9
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc---eeEEEec-------------------------------------
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK---ETFRRDL------------------------------------- 83 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~---~~~~~~~------------------------------------- 83 (415)
..++.+++|+++|++|+++.++.|++||+.+++ .+.....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357899999999998888789999999998766 2222110
Q ss_pred ---------------cCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECC--CCCEEEEEE---ccCceeEEEEc
Q 014977 84 ---------------KSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDH--QSRCIGEFA---FRSDVRSVKLS 142 (415)
Q Consensus 84 ---------------~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~---~~~~i~~l~~~ 142 (415)
..+...+.++.|++++..| ++++.| +.|++||+. +++.+..+. +...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 0122258899999999875 888777 999999998 888888874 67899999999
Q ss_pred CCeEEEE---eCCeEEEEEcCCceeee----EEeccCCCcceEEEecC-CCceEEEEeCCccCeEEEEEcCC-cceEE-E
Q 014977 143 RDRIVVV---LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHH-SSTSVLACPGLQRGQVRIEHFGL-NMIKL-I 212 (415)
Q Consensus 143 ~~~~~~~---~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~dg~v~i~~~~~-~~~~~-~ 212 (415)
|++.+++ .++.|++|++.+++... .+..|...+..++++++ ..+.+|++ |+.|+.|++|+... ..+.. +
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeee
Confidence 9998887 57999999998876554 66777765554444443 11667765 67899999998765 44555 4
Q ss_pred ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-----------------------CCcccEEEEEe
Q 014977 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----------------------VDRAEIYSIAL 269 (415)
Q Consensus 213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~l~~ 269 (415)
.+|...|.+++|+ ++++|++++.|+. |++||+.+++.+..+..+ .....|.+++|
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 5899999999999 9999999999999 999999999998888631 12346899999
Q ss_pred CCCCCEEEEEe-CCCeEEEEEc
Q 014977 270 SPNVQWLAVAS-DKGTVHIFSL 290 (415)
Q Consensus 270 spdg~~l~s~s-~dg~i~vwd~ 290 (415)
+|++++|++++ .|+.|+||++
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999 8999999999
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=7.1e-29 Score=228.69 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=196.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++++ |+.|++|+........... .+...+....+.+++..+++++.| +.++
T Consensus 81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~ 153 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRD-----KTIK 153 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEeecCccceeecCC-----CeEE
Confidence 3478999999999999999999999 9999999998766554433 566667778888988889998887 9999
Q ss_pred EEECCCCCEEEEEE--ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 118 IWDDHQSRCIGEFA--FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 118 vwd~~~~~~~~~~~--~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+||+.......... |...+..++|++++ .+++ .|+.|++||+.+++.+..+..|... +.++.++|++.+|+
T Consensus 154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY--LNTVTVSPDGSLCA 231 (340)
T ss_dssp EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEE
T ss_pred EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc--EEEEEECCCCCEEE
Confidence 99987665443322 78899999998764 3333 6899999999999999999888874 45556666777887
Q ss_pred EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-------CCCccc
Q 014977 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-------GVDRAE 263 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-------~~~~~~ 263 (415)
+ |+.|+.|++|+...........+...+.++.|+|++.++ +++.|+. |++||++++..+..+.. ..|...
T Consensus 232 s-~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 232 S-GGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp E-EETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCC
T ss_pred E-EeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 6 678999999998765544444566789999999998755 5566899 99999998877766542 136778
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
|++++|+|||++|++|+.||.|+|||+++|+
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999999999986
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=255.01 Aligned_cols=201 Identities=10% Similarity=0.059 Sum_probs=163.6
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
..+|...|++++|+|++++||+|+ ||.|+||+....+.... + .+...|.++.|++ +.+|++++.| +.|++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~~L~S~s~D-----~~v~l 83 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GIYLVVINAK-----DTVYV 83 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TTEEEEEETT-----CEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CCEEEEEECc-----CeEEE
Confidence 357999999999999999999999 99999999876544332 3 4677899999999 6688888887 99999
Q ss_pred EECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-----------eEEeccCCCcceEEEecCC
Q 014977 119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-----------HQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 184 (415)
||+.+++++..+.+...|++++|+|++.+++ .|+.|++||+.+++.. ..+..|..++. +++++|
T Consensus 84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~--sl~~sp 161 (902)
T 2oaj_A 84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV--SIQWNP 161 (902)
T ss_dssp EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC--EEEEET
T ss_pred EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE--EEEEcc
Confidence 9999999999999889999999999999888 6999999999887753 12234555444 445555
Q ss_pred Cc-eEEEEeCCccCeEEEEEcCCc-ceEEEecC------------------ccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977 185 ST-SVLACPGLQRGQVRIEHFGLN-MIKLINAH------------------DSHIACFTLTLDGLLLATASTRGTLIRIF 244 (415)
Q Consensus 185 ~~-~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (415)
++ ..++ +|+.|+.| +|+.... .+..+..| ...|.+++|+|+|++|++++.|+. |++|
T Consensus 162 ~~~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lW 238 (902)
T 2oaj_A 162 RDIGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFW 238 (902)
T ss_dssp TEEEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEE
T ss_pred CCCCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEE
Confidence 43 3454 47799999 9997754 45555544 477999999999999999999999 9999
Q ss_pred ECCCCcEEEE
Q 014977 245 NTVDGTRLQE 254 (415)
Q Consensus 245 d~~~~~~~~~ 254 (415)
|+++++++..
T Consensus 239 d~~~g~~~~~ 248 (902)
T 2oaj_A 239 DANSGHMIMA 248 (902)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCcEEEE
Confidence 9999987653
No 83
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-29 Score=256.20 Aligned_cols=296 Identities=13% Similarity=0.154 Sum_probs=206.6
Q ss_pred CCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCceeEEEecc----------------CCCeeEEEEeeeCCeEE
Q 014977 40 SDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILA 101 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 101 (415)
..+|.+.|.+++|+|+ +..|++|+ |+.| |||+.+.+.......+ .|...+.++.|+|++..
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 4679999999999996 47888888 9999 9999986554433221 12367999999999999
Q ss_pred EEecCCCCCCCCCeEEEEECCCCCEEEEEE------c-------------cCceeEEEEc----CCe-EEEE---eC---
Q 014977 102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFA------F-------------RSDVRSVKLS----RDR-IVVV---LE--- 151 (415)
Q Consensus 102 l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~------~-------------~~~i~~l~~~----~~~-~~~~---~d--- 151 (415)
+++++.| +.|++||+++++++.... | ...|.+++|+ |++ .+++ .+
T Consensus 226 lasgs~D-----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 226 IITIHED-----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp EEEEETT-----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred EEEEECC-----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 9999988 999999999998876421 2 3368899984 443 3333 11
Q ss_pred --CeEEEEEc----------------------------------------------------------------------
Q 014977 152 --HKIYVYSF---------------------------------------------------------------------- 159 (415)
Q Consensus 152 --~~i~iwd~---------------------------------------------------------------------- 159 (415)
..+.+|++
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~ 380 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML 380 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence 25556552
Q ss_pred -CCceeeeE-------EeccCCCcceEE--------------------------------EecCCCceEEEEeCCccCeE
Q 014977 160 -VDLKLLHQ-------IETLANLRGLCC--------------------------------LSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 160 -~~~~~~~~-------~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~g~~dg~v 199 (415)
.++..... +..+...+..++ +++++++.+|++ |+.|++|
T Consensus 381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS-gs~DgtV 459 (902)
T 2oaj_A 381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT-GHSNGSV 459 (902)
T ss_dssp TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE-EETTSEE
T ss_pred CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE-ecCCCcE
Confidence 22211000 000001111111 233567777775 7799999
Q ss_pred EEEEcCCcceE---EEe---------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-----------------
Q 014977 200 RIEHFGLNMIK---LIN---------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT----------------- 250 (415)
Q Consensus 200 ~i~~~~~~~~~---~~~---------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~----------------- 250 (415)
++|+.....+. .+. +|...|.+++|+|+|++||+|+.||. |+|||+.+++
T Consensus 460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------C
T ss_pred EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcccceee
Confidence 99998754321 121 78899999999999999999999999 9999997662
Q ss_pred ----------------------------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977 251 ----------------------------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (415)
Q Consensus 251 ----------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 302 (415)
++..+.+ |.+.|++++|+||| +||+|+.|++|+|||++++.....
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~---- 611 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM---- 611 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE----
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE----
Confidence 3556666 88899999999999 999999999999999876542100
Q ss_pred CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEec-----CC----CEE
Q 014977 303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG-----SQ----NTV 373 (415)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~i 373 (415)
. .+..+ . .-+...+..++|+ ++ ..|
T Consensus 612 ------------------------------------~-~~~~~-~--------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 612 ------------------------------------E-NIREI-S--------GAQSACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp ------------------------------------E-EGGGT-C--------SSCCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred ------------------------------------e-ehhHh-c--------cccccceEEEEEEEEecCCCCCcceEE
Confidence 0 00000 0 0112346678888 87 478
Q ss_pred EEEEeCCcEEEEEEecCCCCcEE
Q 014977 374 VIVSMDGSFYRCSFDPVHGGEML 396 (415)
Q Consensus 374 ~~~~~dg~~~~~~~~~~~~~~~~ 396 (415)
++++.||+|++|++.+.+.|++.
T Consensus 646 ~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 646 VCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp EEEETTSEEEEEEEEECGGGCEE
T ss_pred EEEecCCcEEEEEEecCCCCcEE
Confidence 88888999999999776555554
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.5e-29 Score=235.22 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=189.6
Q ss_pred CCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 41 ~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.+|...|.+++|+| ++.+|++++ |+.|++||+.............+...+.++.|++++..+++++.| +.|++
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 189 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLL 189 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEE
Confidence 47999999999999 789999999 999999999863322222223345779999999999999999988 99999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEecCC-CceE
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHS-STSV 188 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (415)
||+ +++.+..+. |...|.+++|+|++. +++ .|+.|++||+.+ ++.+..+ .|.. .+.++.+++ ++.+
T Consensus 190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK--PVNAAYFNPTDSTK 265 (383)
T ss_dssp EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS--CEEEEEECTTTSCE
T ss_pred EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC--ceEEEEEcCCCCCE
Confidence 998 677787777 899999999999987 555 699999999987 5566555 4555 556666677 7777
Q ss_pred EEEeCCccCeEEEEEcCC-cceEEEecCc-----------------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977 189 LACPGLQRGQVRIEHFGL-NMIKLINAHD-----------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~-----------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
|++ ++.|+.|++|+... .....+..|. ..+..++|+|+|++ +++.|+. |++||+.+++
T Consensus 266 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~~ 341 (383)
T 3ei3_B 266 LLT-TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSGG 341 (383)
T ss_dssp EEE-EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTCC
T ss_pred EEE-EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCCc
Confidence 776 66899999998764 3445555442 23444666777766 7778999 9999999999
Q ss_pred EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
.+..+..+.+...+..++|+|++++|++++ ||.|+|||+++
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999998765667788889999999999997 99999999975
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=3.7e-28 Score=250.28 Aligned_cols=244 Identities=13% Similarity=0.134 Sum_probs=207.6
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++|+ |+.|+||++.+.+..... ..|...+.++.|++++..+++++.| +.|+
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~ 122 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD-----LTVK 122 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT-----SEEE
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC-----CEEE
Confidence 4457999999999999999999999 999999999987665543 4788889999999999989998887 9999
Q ss_pred EEECCCC-CEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccC-CCcceEEEecCCCceEEE
Q 014977 118 IWDDHQS-RCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 118 vwd~~~~-~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 190 (415)
+||+.++ .....+. |...|.+++|+| ++..++ .|+.|++||+.+++....+..+. ..+..+++++.+++.+++
T Consensus 123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 9999887 5556666 889999999999 777776 68999999998888877776554 666777777766888887
Q ss_pred EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+ ++.||.|++|+.. ++.+..+.+|...|.+++|+|+|.+|++++.||. |++||+.+++.+..+.. +...+.+++|
T Consensus 203 ~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~~~~~ 278 (814)
T 3mkq_A 203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIAT 278 (814)
T ss_dssp E-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEEEEEE
T ss_pred E-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEEEEEE
Confidence 6 6789999999865 4567778899999999999999999999999999 99999999999999887 6779999999
Q ss_pred CCCCC--EEEEEeCCCeEEEEEceecc
Q 014977 270 SPNVQ--WLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 270 spdg~--~l~s~s~dg~i~vwd~~~~~ 294 (415)
+|++. ++++++ ++.+.+|++..+.
T Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 279 HPTGRKNYIASGF-DNGFTVLSLGNDE 304 (814)
T ss_dssp CTTCGGGEEEEEE-TTEEEEEECSCCS
T ss_pred ccCCCceEEEEEe-CCCEEEEEcCCCC
Confidence 99987 455554 6669999987654
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.2e-28 Score=232.65 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=219.4
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|.+.|.. ++++++++|++|+ |+.|++||+.+.+... .+..|...+.++.++++ .+++++.| +.|
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~--~l~s~~~d-----g~i 181 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDN--IIISGSTD-----RTL 181 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEETT--EEEEEETT-----SCE
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCCCCEEEEEecCC--EEEEEeCC-----CeE
Confidence 346789887643 3555789999999 9999999999866544 35578888999999854 66677776 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+ .++.++ +.++++ |+
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~~-~~ 256 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYD--GRRVVS-GA 256 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEEC--SSCEEE-EE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE--EEEEEC--CCEEEE-Ec
Confidence 999999999998888 899999999987664444 79999999999999999998887744 445553 445655 66
Q ss_pred ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
.||.|++|+.. .+.+..+.+|...|.+++| ++.+|++++.|+. |++||+++++.+..+.. |...+.++.+ ++
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--~~ 329 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--KD 329 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--ET
T ss_pred CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--eC
Confidence 89999998865 4667788899999999999 8899999999999 99999999999999887 7778888887 46
Q ss_pred CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceE
Q 014977 274 QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFA 353 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (415)
.+|++++.||.|++||+++++.......+
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------------------------------------- 358 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGP--------------------------------------------------- 358 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECST---------------------------------------------------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccC---------------------------------------------------
Confidence 79999999999999999887643211100
Q ss_pred EEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 354 QFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
......+..++|.+ +.+++++.||.|++|++..
T Consensus 359 --~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 359 --NKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp --TSCSSCEEEEEECS-SEEEEEETTSEEEEEETTT
T ss_pred --CCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCC
Confidence 00113455567753 7889999999999998864
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-28 Score=227.56 Aligned_cols=248 Identities=9% Similarity=0.096 Sum_probs=204.8
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++++ |+.|++||+.+.+..... .+...+.++.|++++..++++..+....++.|.
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 4567999999999999999999999 999999999987655543 366778999999999888877653222348999
Q ss_pred EEECCCCCE-----------EEEEE-ccC--ceeEEEEcCCeEEEE---eCCeEEEEEcCC-ceeeeEEeccCCCcceEE
Q 014977 118 IWDDHQSRC-----------IGEFA-FRS--DVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCC 179 (415)
Q Consensus 118 vwd~~~~~~-----------~~~~~-~~~--~i~~l~~~~~~~~~~---~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 179 (415)
+||+..+.. +..+. +.. .+.+++|+|++..++ .|+.|++||+.+ ++.+..+..+.. .+.+
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~ 223 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK--SISD 223 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS--CEEE
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC--ceeE
Confidence 999876532 22222 344 899999999998877 689999999988 788888888776 4555
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEEE
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--------------TLIRIFN 245 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--------------~~I~vwd 245 (415)
+.+++++.+|++ ++.|+.|++|+...........+...+..++|+|+++++++++.++ . +++||
T Consensus 224 ~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~d 301 (369)
T 3zwl_B 224 MQFSPDLTYFIT-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFYH 301 (369)
T ss_dssp EEECTTSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEEE
T ss_pred EEECCCCCEEEE-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEEe
Confidence 666667778776 6689999999987655444444889999999999999999999988 7 99999
Q ss_pred CCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.+++.+..+.. |...|.+++|+|++++|++++.||.|++|+++++..
T Consensus 302 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 302 KIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 999999999988 788999999999999999999999999999998764
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.2e-28 Score=265.24 Aligned_cols=281 Identities=14% Similarity=0.133 Sum_probs=224.9
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~ 115 (415)
...+|...|.+++|+|++++|++++ |+.|+|||+.+.+.... +..|...+.++.|++ +..++++++.| +.
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~d-----~~ 724 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSND-----FF 724 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSCCEEEEEETT-----SC
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE--EcCCCCcEEEEEEecCCCceEEEEEeCC-----Ce
Confidence 3468999999999999999999999 99999999998765544 447888899999998 66788888887 99
Q ss_pred EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe----------------------
Q 014977 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---------------------- 169 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~---------------------- 169 (415)
|++||+.+++++..+. |...|.+++|+|++..++ .|+.|++||+.+++....+.
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 9999999999998887 899999999999998877 68999999997766544432
Q ss_pred ---------------------------------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecC
Q 014977 170 ---------------------------------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAH 215 (415)
Q Consensus 170 ---------------------------------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~ 215 (415)
.|.. .+.++.+++++.++++ ++.++.|++|+... ..+..+.+|
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSPYDHLAVI-ALSQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS--CCCEEEECSSTTEEEE-ECSSSCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC--ceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeeecCCC
Confidence 2222 3344555666777776 66899999998764 456677889
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC------------------------------------------------
Q 014977 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTV------------------------------------------------ 247 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~------------------------------------------------ 247 (415)
...|.+++|+|+|++|++++.|+. |++||+.
T Consensus 882 ~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred ccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence 999999999999999999998888 8888743
Q ss_pred -------------------------------CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 248 -------------------------------DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 248 -------------------------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+++.+..+.+ |...|.+++|+|+|++|++++.||.|++||+.+++..
T Consensus 961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 2223333333 6778999999999999999999999999999887643
Q ss_pred CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEE
Q 014977 297 EDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIV 376 (415)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 376 (415)
.. .........+.|++++.++++
T Consensus 1039 ~~---------------------------------------------------------~~~~~~v~~~~~~~~~~l~~~ 1061 (1249)
T 3sfz_A 1039 FL---------------------------------------------------------QAHQETVKDFRLLQDSRLLSW 1061 (1249)
T ss_dssp CC---------------------------------------------------------BCCSSCEEEEEECSSSEEEEE
T ss_pred EE---------------------------------------------------------ecCCCcEEEEEEcCCCcEEEE
Confidence 10 001234556788999999999
Q ss_pred EeCCcEEEEEEec
Q 014977 377 SMDGSFYRCSFDP 389 (415)
Q Consensus 377 ~~dg~~~~~~~~~ 389 (415)
+.||.+++|++..
T Consensus 1062 ~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1062 SFDGTVKVWNVIT 1074 (1249)
T ss_dssp ESSSEEEEEETTT
T ss_pred ECCCcEEEEECCC
Confidence 9999999998864
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.1e-29 Score=234.08 Aligned_cols=247 Identities=10% Similarity=0.048 Sum_probs=202.2
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++++ |+.|++|++++.+......+..+...+.++.|++++..+++++.+ +.|+
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~ 121 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVIS 121 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEE
Confidence 3467999999999999999999999 999999999886655555555788889999999999999998887 9999
Q ss_pred EEECCCCCE---EEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEc------------------CCceeeeEEecc
Q 014977 118 IWDDHQSRC---IGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSF------------------VDLKLLHQIETL 171 (415)
Q Consensus 118 vwd~~~~~~---~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~------------------~~~~~~~~~~~~ 171 (415)
+||+..++. ...+. |...|.+++|+|++.+++ .|+.|++||+ ..++.+..+..|
T Consensus 122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 999988763 33333 688999999999998777 5899999995 356777777777
Q ss_pred CCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--
Q 014977 172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-- 248 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-- 248 (415)
.. .+.++.+++++.+|++ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++++|+++ .|+. |++||+.+
T Consensus 202 ~~--~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~ 276 (372)
T 1k8k_C 202 CG--WVHGVCFSANGSRVAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAA 276 (372)
T ss_dssp SS--CEEEEEECSSSSEEEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTT
T ss_pred CC--eEEEEEECCCCCEEEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcC
Confidence 66 4555666667777776 6689999999875 56778889999999999999999988887 8999 99999987
Q ss_pred CcEE--------------------------------------EEEecCCCcccEEEEEeC-CCC---CEEEEEeCCCeEE
Q 014977 249 GTRL--------------------------------------QEVRRGVDRAEIYSIALS-PNV---QWLAVASDKGTVH 286 (415)
Q Consensus 249 ~~~~--------------------------------------~~~~~~~~~~~v~~l~~s-pdg---~~l~s~s~dg~i~ 286 (415)
++.. ..+.. .|...|++++|. ++| .+|++++.||.|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS-LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS-SSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc-cccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 4210 12221 278899999966 677 9999999999999
Q ss_pred EEEceecccC
Q 014977 287 IFSLRVRVVG 296 (415)
Q Consensus 287 vwd~~~~~~~ 296 (415)
+|++++++..
T Consensus 356 ~W~~~~~~~~ 365 (372)
T 1k8k_C 356 IWDVRSLESA 365 (372)
T ss_dssp EEEHHHHHHH
T ss_pred EEEecChhHh
Confidence 9999987653
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=5.6e-29 Score=252.06 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=194.3
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++|+|++++|++|+ |+.|+|||+.+...... +..|...+.++.|++++..+++++.| +.|+
T Consensus 425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~ 497 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRD-----RTIK 497 (694)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CEEE
Confidence 3568999999999999999999999 99999999988655443 44888899999999999999999988 9999
Q ss_pred EEECCCCCEEEEE----EccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 118 vwd~~~~~~~~~~----~~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+||+......... .|...|.+++|+|++ ..++ .|+.|++||+.+++....+..|.. .+.++.+++++.+
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~ 575 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSL 575 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSE
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCE
Confidence 9997654333222 167789999999986 3344 699999999999999989988887 4555666667778
Q ss_pred EEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC---------
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--------- 259 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--------- 259 (415)
|++ |+.||.|++|+...........+...|.+++|+|++.+|++++ ++. |+|||+++++.+..+....
T Consensus 576 l~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 576 CAS-GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EEE-EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC--------
T ss_pred EEE-EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccccc
Confidence 876 6789999999986544333234567899999999999887765 566 9999999998887765321
Q ss_pred --------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 260 --------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 260 --------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+...+++++|+|+|++|++|+.||+|+||++..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 011378999999999999999999999999863
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.1e-27 Score=229.60 Aligned_cols=237 Identities=16% Similarity=0.249 Sum_probs=194.8
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....+|...|.+++|+ +.+|++|+ |+.|++||+++.+.... +..|...+.++.++++. +++++.| +.|
T Consensus 153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~--l~s~s~d-----g~i 221 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKR--VVSGSRD-----ATL 221 (445)
T ss_dssp EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTE--EEEEETT-----SEE
T ss_pred EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCE--EEEEeCC-----CEE
Confidence 3456899999999998 56999999 99999999998665443 44788888899887654 6666666 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
++||+.+++.+..+. |...|.++.+..+....+ .|+.|++||+.+++.+..+..|... +.++.+ ++.++++ |+
T Consensus 222 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~--~~~~l~~-~~ 296 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQF--DGIHVVS-GS 296 (445)
T ss_dssp EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--EEEEEE--CSSEEEE-EE
T ss_pred EEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc--eEEEEE--CCCEEEE-Ee
Confidence 999999999998887 899999999943332222 6999999999999999999888774 455555 3456665 66
Q ss_pred ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-CCcccEEEEEeCCC
Q 014977 195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSPN 272 (415)
Q Consensus 195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~spd 272 (415)
.|+.|++|+.. ++.+..+.+|...+.++.+ ++.+|++++.||. |++||+++++.+..+... .|...|.+++|+
T Consensus 297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence 89999999875 5667788899999998887 4679999999999 999999999999888753 266789999995
Q ss_pred CCEEEEEeCCCeEEEEEceeccc
Q 014977 273 VQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+++|++++.||.|++||+.+++.
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCeEEEEECCCCce
Confidence 58999999999999999998874
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.7e-30 Score=259.85 Aligned_cols=248 Identities=14% Similarity=0.133 Sum_probs=198.7
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCe
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTK 115 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~ 115 (415)
...+|.+.|++++|+|++++|++|+ ||.|+||++..........+..|...|.++.|+++ +..+++++.| |.
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~ 78 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK 78 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SC
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----Ce
Confidence 4678999999999999999999999 99999999985444444556688899999999987 8899999988 99
Q ss_pred EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC-
Q 014977 116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS- 184 (415)
Q Consensus 116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~- 184 (415)
|++||+.+++ .+..+. |...|.+++|+|+ +..++ .|+.|++||+.++.. ...+..|.. .+.++.++|
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~ 156 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA 156 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS--CEEEEEECCC
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC--ceEEEEecCc
Confidence 9999999886 455555 8899999999998 77766 689999999987733 334455655 455555555
Q ss_pred ------------CceEEEEeCCccCeEEEEEcCC-----cceEEEecCccceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 014977 185 ------------STSVLACPGLQRGQVRIEHFGL-----NMIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIF 244 (415)
Q Consensus 185 ------------~~~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vw 244 (415)
++.++++ |+.||.|++|+... .....+.+|...|.+++|+|+ +.+|++++.||. |++|
T Consensus 157 ~~~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iw 234 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW 234 (753)
T ss_dssp C---------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEE
T ss_pred ccccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEe
Confidence 4666665 66899999998764 345667889999999999999 899999999999 9999
Q ss_pred ECCCCcEE---EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 245 NTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 245 d~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
|+.+++.. .......|...|++++|+|+|++|++++.||.|++|++..+.+
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 99887421 1112222677899999999999999999999999999997554
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.8e-29 Score=237.60 Aligned_cols=246 Identities=15% Similarity=0.200 Sum_probs=198.7
Q ss_pred cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccC----------CceeEEEeccCCCeeEEEEeeeCCeE-EEEec
Q 014977 39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNIL-ALVGA 105 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~ 105 (415)
....|.+.|++++|+|+ +.+||+++ +|.|+||++.. ...... +..|...+.++.|++++. .++++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCCeEEEE
Confidence 34679999999999997 67899998 99999999976 233333 347778889999999887 88888
Q ss_pred CCCCCCCCCeEEEEECCCCCE-------EEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc---eeeeEEec
Q 014977 106 GDNSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIET 170 (415)
Q Consensus 106 ~~d~~~~~~~i~vwd~~~~~~-------~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~---~~~~~~~~ 170 (415)
+.| +.|++|++.++.. ...+. |...|.+++|+| ++.+++ .|+.|++||++++ +.+..+..
T Consensus 201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 887 9999999987422 23343 888999999999 555555 6999999999876 56667777
Q ss_pred cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECC
Q 014977 171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTV 247 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~ 247 (415)
|... +.++.+++++..++++|+.||.|++|+.+. ..+..+..|...|.+++|+|+++ +|++++.|+. |+|||+.
T Consensus 276 ~~~~--v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~ 352 (430)
T 2xyi_A 276 HTAE--VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS 352 (430)
T ss_dssp CSSC--EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred CCCC--eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence 7764 555556666654344577899999999875 56788899999999999999995 7999999999 9999997
Q ss_pred C--------------CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccC
Q 014977 248 D--------------GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 248 ~--------------~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
. .+.+..+.+ |...|.+++|+|+++ +|++++.||.|+||++......
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 6 356666666 778999999999999 8999999999999999876543
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=8e-29 Score=229.80 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=191.5
Q ss_pred CCCCCceEEEEEeCC---CCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEE------eeeCCeEEEEecCCCC
Q 014977 41 DVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEM------LFRCNILALVGAGDNS 109 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~---g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l~s~~~d~ 109 (415)
.+|...|.+++|+|+ +.+|++|+ |+.|++|++.+.+ .... +..|...+.++ .|++++..+++++.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d- 138 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD- 138 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CCCEEEEEETT-
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCccEEEEEeCC-
Confidence 378999999999998 69999999 9999999998766 3333 44677778887 456788889999887
Q ss_pred CCCCCeEEEEECCCCC-EEEEEE-cc----CceeEEE----EcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977 110 QYPPTKVIIWDDHQSR-CIGEFA-FR----SDVRSVK----LSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~-~~~~~~-~~----~~i~~l~----~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
+.|++||+.+++ .+..+. +. ..+.++. |++++.+++ .|+.|++||+++++.... ..+.. .
T Consensus 139 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~ 211 (357)
T 3i2n_A 139 ----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKN--G 211 (357)
T ss_dssp ----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSS--C
T ss_pred ----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCC--c
Confidence 999999999887 666665 33 3788888 678888887 579999999999887544 34454 4
Q ss_pred eEEEecCC---CceEEEEeCCccCeEEEEEcCC-cceEE-----EecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEEC
Q 014977 177 LCCLSHHS---STSVLACPGLQRGQVRIEHFGL-NMIKL-----INAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNT 246 (415)
Q Consensus 177 ~~~~~~~~---~~~~l~~~g~~dg~v~i~~~~~-~~~~~-----~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~ 246 (415)
+.++.++| ++.++++ ++.||.|++|+... +.... +.+|...|.+++|+|+++ +|++++.||. |++||+
T Consensus 212 v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~ 289 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKY 289 (357)
T ss_dssp EEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEE
T ss_pred eEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeec
Confidence 55566665 6667766 66899999988654 23333 348999999999999998 8999999999 999999
Q ss_pred CCC-------------------cEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecc
Q 014977 247 VDG-------------------TRLQEVRRGVDRAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRV 294 (415)
Q Consensus 247 ~~~-------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~ 294 (415)
+++ +.+..+.. |...|.+++|+|++++|+ +++.||.|+|||+.+.+
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 754 35666776 788999999999999998 89999999999998765
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=244.79 Aligned_cols=243 Identities=12% Similarity=0.061 Sum_probs=186.9
Q ss_pred CCCCCceEEEEEeCC------CCEEEEEe-CCcEEEEEccCCcee---------EEEeccCCCeeEEEEeeeCCeEEEEe
Q 014977 41 DVDEIELISVSWNQD------YGCFAAGT-SCGFRIYNCEPFKET---------FRRDLKSGGFRIVEMLFRCNILALVG 104 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~------g~~la~g~-d~~v~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s 104 (415)
..|.+.|.+++|+|+ +.+||+++ |+.|+||++...... ....+..|...+.++.|+++. .|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 467889999999997 57999999 999999999764321 011344677889999998876 5788
Q ss_pred cCCCCCCCCCeEEEEECCCCC-EEEEEE-ccCceeEE--EEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977 105 AGDNSQYPPTKVIIWDDHQSR-CIGEFA-FRSDVRSV--KLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 105 ~~~d~~~~~~~i~vwd~~~~~-~~~~~~-~~~~i~~l--~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
++.| |+|++||+.++. +...+. |...|.++ .|++++ .+++ .|++|++||+++++++..+.+|.....
T Consensus 283 gs~D-----gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 283 GFKN-----GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp EETT-----SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred EeCC-----CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 8877 999999998764 444555 89999999 578887 6666 699999999999888777776654222
Q ss_pred eEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------
Q 014977 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------ 249 (415)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------ 249 (415)
+.+++++|++..+++ ++.|++|++|+.+. ..+..+.+|...|++++|+|+|++|++|+.|+. |++||+..+
T Consensus 358 v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~ 435 (524)
T 2j04_B 358 LVPVVYCPQIYSYIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIK 435 (524)
T ss_dssp CCCEEEETTTTEEEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC-
T ss_pred ccceEeCCCcCeEEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccc
Confidence 334455555666765 56899999998664 556788899999999999999999999999999 999985321
Q ss_pred --------------------------------------cEEEEEecCCCcccEEEEEeCCCCC---EEEEEeCCCeEEEE
Q 014977 250 --------------------------------------TRLQEVRRGVDRAEIYSIALSPNVQ---WLAVASDKGTVHIF 288 (415)
Q Consensus 250 --------------------------------------~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~vw 288 (415)
..+..+.+ |...|.+++|+|++. +||+|+.||.|+||
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 01112222 567899999999964 99999999999999
Q ss_pred Eceec
Q 014977 289 SLRVR 293 (415)
Q Consensus 289 d~~~~ 293 (415)
+++-.
T Consensus 514 ~l~~~ 518 (524)
T 2j04_B 514 YLSLE 518 (524)
T ss_dssp ECSCC
T ss_pred Ecccc
Confidence 98753
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.8e-28 Score=232.09 Aligned_cols=248 Identities=13% Similarity=0.149 Sum_probs=201.2
Q ss_pred ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce-----eEEEeccCCCeeEEEEeeeCCe-EEEEecCCCC
Q 014977 38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNS 109 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~ 109 (415)
....+|.+.|++++|+| ++.+|++|+ |+.|+||++.+.+. .....+..|...+.++.|++++ .++++++.|
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d- 153 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD- 153 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-
Confidence 34678999999999999 999999999 99999999987531 1112344788899999999998 688888887
Q ss_pred CCCCCeEEEEECCCCCEEEEE--E-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE-eccCCCcceEEEec
Q 014977 110 QYPPTKVIIWDDHQSRCIGEF--A-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSH 182 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~--~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~ 182 (415)
+.|++||+.+++.+..+ . |...|.+++|+|++.+++ .|+.|++||+++++.+..+ ..|... .+..+.+
T Consensus 154 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~ 228 (402)
T 2aq5_A 154 ----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVF 228 (402)
T ss_dssp ----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SCCEEEE
T ss_pred ----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cceEEEE
Confidence 99999999999999998 4 899999999999998777 6999999999999998888 555542 2455566
Q ss_pred CCCceEEEEeC---CccCeEEEEEcCCcc--eEEEe-cCccceEEEEeCCCCCEEEE-EeCCCcEEEEEECCCCcE-EEE
Q 014977 183 HSSTSVLACPG---LQRGQVRIEHFGLNM--IKLIN-AHDSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDGTR-LQE 254 (415)
Q Consensus 183 ~~~~~~l~~~g---~~dg~v~i~~~~~~~--~~~~~-~~~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~~~-~~~ 254 (415)
++++.++++ | +.|+.|++|+..... +.... .|...+.+++|+|++++|++ ++.|+. |++||+.+++. +..
T Consensus 229 ~~~~~~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 229 VSEGKILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHY 306 (402)
T ss_dssp CSTTEEEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEE
T ss_pred cCCCcEEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEe
Confidence 677777766 5 689999999987632 33333 57788999999999999865 557999 99999998884 556
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+....+...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 655335678999999999998864 567999999998653
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=223.36 Aligned_cols=245 Identities=12% Similarity=0.122 Sum_probs=194.1
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI 154 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i 154 (415)
+.+|...|.++.|++++.++++++.| +.|++||+. +++.+..+. |...|.+++|+++ +.+++ .|+.|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 44788899999999999999999887 999999987 556666666 8999999999876 67666 68999
Q ss_pred EEEEcCCce--eeeEEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCC-
Q 014977 155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL- 226 (415)
Q Consensus 155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp- 226 (415)
++||+.+++ .+..+..|... +.++.++++ +.++++ ++.|+.|++|+.... ....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSAS--VNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSC--EEEEEECCGGGCSEEEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEcCCCceeEeeeecCCCcc--eEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 999999887 56666666664 455555555 667766 668999999998764 4556778999999999999
Q ss_pred ------------CCCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCeEEE
Q 014977 227 ------------DGLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHI 287 (415)
Q Consensus 227 ------------~g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~v 287 (415)
++.+|++++.|+. |++||+++++ .+..+.. |...|.+++|+|+ +++|++++.||.|++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp C----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 6999999999999 9999998765 3445555 7889999999999 899999999999999
Q ss_pred EEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEe
Q 014977 288 FSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAF 367 (415)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (415)
||+++++..... .. +. . .-.......++|
T Consensus 236 wd~~~~~~~~~~------------------------------------~~----~~-~----------~~~~~~v~~~~~ 264 (379)
T 3jrp_A 236 WTQDNEQGPWKK------------------------------------TL----LK-E----------EKFPDVLWRASW 264 (379)
T ss_dssp EEESSTTSCCEE------------------------------------EE----SS-S----------SCCSSCEEEEEE
T ss_pred EeCCCCCcccee------------------------------------ee----ec-c----------ccCCCcEEEEEE
Confidence 999887532100 00 00 0 001245667899
Q ss_pred cCC-CEEEEEEeCCcEEEEEEec
Q 014977 368 GSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 368 ~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+++ ..|++++.||.|++|++..
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEeCCC
Confidence 998 6688888899999999985
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-28 Score=231.27 Aligned_cols=240 Identities=14% Similarity=0.115 Sum_probs=190.9
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEcc---CCceeE--------EEeccC--CCeeEEEEe--eeCCeEEEEec
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE---PFKETF--------RRDLKS--GGFRIVEML--FRCNILALVGA 105 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~---~~~~~~--------~~~~~~--~~~~~~~~~--~~~~~~~l~s~ 105 (415)
+|...|.+++|+|++.+|++|+ |+.|++||++ ..+... ...+.. +...+.++. +++++..++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 6999999999999999999999 9999999995 222211 111211 344455555 66789999999
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe-ccCCCcceE
Q 014977 106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLC 178 (415)
Q Consensus 106 ~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~ 178 (415)
+.| +.|++||+.+++.+..+. |...|.+++|+|++.+++ .|+.|++||+++++.+..+. .+..++..+
T Consensus 189 ~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 189 TNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV 263 (437)
T ss_dssp ETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred eCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence 988 999999999999999887 689999999999998887 69999999999999988875 454433334
Q ss_pred EE--ecCCCceEEEEeCCccCeEEEEEcC-CcceEEEec--------------------------CccceEEEEeCCCCC
Q 014977 179 CL--SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA--------------------------HDSHIACFTLTLDGL 229 (415)
Q Consensus 179 ~~--~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~--------------------------~~~~i~~l~~sp~g~ 229 (415)
++ .+++++.++++ |+.||.|++|+.. ++.+..+.+ |...|.+++|+ +++
T Consensus 264 ~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 264 EVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 33 34467777776 7789999999986 444555543 55668888998 778
Q ss_pred EEEEEeCCCcEEEEEECCCCcEEEEEecCC-----------------------------------CcccEEEEEeCCC--
Q 014977 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------------------------------DRAEIYSIALSPN-- 272 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~l~~spd-- 272 (415)
+|++++.|+. |++||+.+++.+..+..+. |...|++++|+++
T Consensus 342 ~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 342 ILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred EEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 9999999999 9999999988777666531 6778999999988
Q ss_pred CCEEEEEeCCCeEEEEE
Q 014977 273 VQWLAVASDKGTVHIFS 289 (415)
Q Consensus 273 g~~l~s~s~dg~i~vwd 289 (415)
+.+|++|+.||.|+||+
T Consensus 421 ~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SEEEEEEETTSCEEEEC
T ss_pred ceEEEEEcCCceEEEeC
Confidence 78999999999999995
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=215.88 Aligned_cols=239 Identities=14% Similarity=0.185 Sum_probs=193.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
....|...|.+++|+|++++|++++ |+.+++|++.... ......+..+...+.++.|.++ .+++++.| +.|
T Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d-----~~i 126 (313)
T 3odt_A 54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWD-----KTA 126 (313)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETT--EEEEEETT-----SEE
T ss_pred EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCC--EEEEEeCC-----CCE
Confidence 3457899999999999999999999 9999999987532 1112234578888899999544 56666666 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCceEEE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 190 (415)
++|| .++.+..+. |...+.++.+.+ ++..++ .|+.|++|| ..+....+.. +.. .+.++.+++++. ++
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND--VVRHLAVVDDGH-FI 199 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS--CEEEEEEEETTE-EE
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc--cEEEEEEcCCCe-EE
Confidence 9999 677777777 899999999987 666665 689999999 4456666655 555 445555555666 44
Q ss_pred EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++ .|++++.|+. |++||+++++.+..+.. |...|.+++|
T Consensus 200 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~~~ 274 (313)
T 3odt_A 200 S-CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSVDC 274 (313)
T ss_dssp E-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEEEE
T ss_pred E-ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEEEE
Confidence 4 6689999999876 56778888999999999999999 5889999999 99999999999999987 7779999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 270 SPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 270 spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
+|+++ +++++.||.|++||+++++...
T Consensus 275 ~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 275 MSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp CTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred ccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 99998 5679999999999999887543
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.3e-27 Score=224.46 Aligned_cols=276 Identities=11% Similarity=0.013 Sum_probs=218.4
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE---eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR---DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
...+.+++|+|++.+++++. ++.|++||+++.+..... .+..+...+.++.|++++.++++++.+ +.|++|
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~ 196 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF 196 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence 34566899999777777777 889999999986654322 223667788999999999999999887 999999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
|+.+++.+..+. +...+.+++|+|++..++ .++.|++||+.+++.+..+..+. .+..+.+++++..+++++.
T Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEE
T ss_pred ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEEC
Confidence 999999998887 788999999999987664 47999999999998887776543 4667777778877776442
Q ss_pred -------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEE-EEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 195 -------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 195 -------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
.|+.|++|+...........|...+..++|+|+++.+ ++++.++. |++||+.+++.+..+. +...+.+
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~ 349 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNT 349 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCe
Confidence 4789999998766555555677789999999999754 66688998 9999999999888776 4567999
Q ss_pred EEeCCCCCEEEEEeC---------------CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977 267 IALSPNVQWLAVASD---------------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP 331 (415)
Q Consensus 267 l~~spdg~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (415)
++|+|+|++|++++. ||.|++||+.+++...
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~---------------------------------- 395 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE---------------------------------- 395 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE----------------------------------
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE----------------------------------
Confidence 999999999988876 5799999998776321
Q ss_pred CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe-CCcEEEEEEe
Q 014977 332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFD 388 (415)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-dg~~~~~~~~ 388 (415)
.+.. ......++|+++ +.+++++. ||.+++|+++
T Consensus 396 ----------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 ----------------------FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ----------------------EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ----------------------EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 1222 134566889998 56677776 9999999985
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.4e-28 Score=231.17 Aligned_cols=239 Identities=8% Similarity=0.133 Sum_probs=190.6
Q ss_pred ceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCcee--EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEE
Q 014977 46 ELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
....++++|+...++. ++ +|.|+||+++..+.. ....+.+|...+.++.|++ ++.++++++.| +.|++||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw~ 110 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-----CTVMVWE 110 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-----SEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEEE
Confidence 3456889998766554 55 999999999754332 1123457888999999999 88899999988 9999999
Q ss_pred CCCC-------CEEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEE--eccCCCcceEEEecCCCc
Q 014977 121 DHQS-------RCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSST 186 (415)
Q Consensus 121 ~~~~-------~~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 186 (415)
+.++ +.+..+. |...|.+++|+|++ .+++ .|+.|++||+.+++.+..+ ..|.. .+.++.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 188 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD--TIYSVDWSRDG 188 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS--CEEEEEECTTS
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC--ceEEEEECCCC
Confidence 9887 5667776 89999999999998 4555 6899999999999999888 56666 55666666677
Q ss_pred eEEEEeCCccCeEEEEEcCC-cceEEE-ecCccc-eEEEEeCCCCCEEEEE---eCCCcEEEEEECCCCcE-EEEEecCC
Q 014977 187 SVLACPGLQRGQVRIEHFGL-NMIKLI-NAHDSH-IACFTLTLDGLLLATA---STRGTLIRIFNTVDGTR-LQEVRRGV 259 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~-~~~~~~-~~~~~~-i~~l~~sp~g~~l~s~---s~dg~~I~vwd~~~~~~-~~~~~~~~ 259 (415)
.+|++ ++.|+.|++|+... +.+..+ ..|... +.++.|+|++++|++| +.|+. |++||+++++. +......
T Consensus 189 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~~- 265 (402)
T 2aq5_A 189 ALICT-SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELD- 265 (402)
T ss_dssp SCEEE-EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEECC-
T ss_pred CEEEE-EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEecc-
Confidence 77776 66899999999764 556666 678766 8999999999999999 78999 99999988764 3333321
Q ss_pred CcccEEEEEeCCCCCEEEE-EeCCCeEEEEEceecc
Q 014977 260 DRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVRV 294 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~~ 294 (415)
+...+.+++|+|++++|++ ++.||.|++||+.+++
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 5668999999999999975 5579999999998876
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-28 Score=222.77 Aligned_cols=228 Identities=8% Similarity=0.013 Sum_probs=173.3
Q ss_pred EEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-------
Q 014977 51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH------- 122 (415)
Q Consensus 51 ~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~------- 122 (415)
.+.+++.+|++|+ |+.|++||+++.+...... ...+..+.++|+ +++++.| +.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITILD 110 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEee
Confidence 3446788999999 9999999999876554432 233445667777 7788877 999999654
Q ss_pred --CCCEEEEEE--ccCceeEEEEcC--CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 123 --QSRCIGEFA--FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 123 --~~~~~~~~~--~~~~i~~l~~~~--~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
+++.+..+. |...|.+++|+| ++.+++ .|+.|++||+++++.+.....+.. ..+.++.++|++.++++ |
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~las-g 188 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLAL-Y 188 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEE-E
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEE-E
Confidence 666666665 567899999999 888887 699999999999888666543322 23556666777778876 7
Q ss_pred CccCeEEEEEcCCcc-e-EEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-CcccE--EEE
Q 014977 194 LQRGQVRIEHFGLNM-I-KLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEI--YSI 267 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~-~-~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v--~~l 267 (415)
+.||.|++|+.+... + ..+.. |..+|.+++|+|+|.+|++++ ++. |++||+++++.+..+.... +...+ .++
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcceeecccccccccccceEE
Confidence 799999999987644 3 56777 999999999999999999999 458 9999999887654443200 11223 469
Q ss_pred EeCCCCCEEEEEeC-CCeEEEEEceecc
Q 014977 268 ALSPNVQWLAVASD-KGTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~-dg~i~vwd~~~~~ 294 (415)
+|+|+|++|++++. |+.|+||++++..
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 99999999999998 9999999997665
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.1e-29 Score=234.87 Aligned_cols=240 Identities=13% Similarity=0.101 Sum_probs=186.5
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC--CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEc
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSF 159 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~ 159 (415)
+...+.++.|++++.++++++.| +.|++||+.++ +.+..+. |...|.+++|+|++.+++ .|+.|++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 44568889999999999999887 99999999988 5666666 899999999999988777 5899999999
Q ss_pred CCce---eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEec-CccceEEEEeCCCCCEE
Q 014977 160 VDLK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINA-HDSHIACFTLTLDGLLL 231 (415)
Q Consensus 160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~-~~~~i~~l~~sp~g~~l 231 (415)
.+++ ....+..|.. .+.++.+++++.+|++ ++.|+.|++|+..... ...+.. |...|.+++|+|++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNR--AATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ----CCCCEEECCCCSS--CEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred CCCCceeeeeEecccCC--ceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 8876 4555566665 5666777777777776 6689999999887653 677777 99999999999999999
Q ss_pred EEEeCCCcEEEEEECC------------------CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 232 ATASTRGTLIRIFNTV------------------DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 232 ~s~s~dg~~I~vwd~~------------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
++++.|+. |++||+. .++.+..+ . |...|.+++|+|++++|++++.||.|++||++++
T Consensus 162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999 9999985 24455555 4 8889999999999999999999999999999988
Q ss_pred ccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEE
Q 014977 294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTV 373 (415)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 373 (415)
+.... ....+..+...+..++|++++.+
T Consensus 238 ~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~ 265 (377)
T 3dwl_C 238 EQPPR----------------------------------------------------ALITVKLSQLPLRSLLWANESAI 265 (377)
T ss_dssp TSCEE----------------------------------------------------ECCCEECSSSCEEEEEEEETTEE
T ss_pred CCcce----------------------------------------------------eeEeecCCCCceEEEEEcCCCCE
Confidence 74100 00122233345677899999999
Q ss_pred EEEEeCCcEEEEEEec
Q 014977 374 VIVSMDGSFYRCSFDP 389 (415)
Q Consensus 374 ~~~~~dg~~~~~~~~~ 389 (415)
++++.++.+.+|....
T Consensus 266 l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 266 VAAGYNYSPILLQGNE 281 (377)
T ss_dssp EEEESSSSEEEECCCC
T ss_pred EEEEcCCcEEEEEeCC
Confidence 9999998888998763
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=228.35 Aligned_cols=305 Identities=12% Similarity=0.089 Sum_probs=211.4
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-----------
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----------- 131 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----------- 131 (415)
++.+++|+++...... .+..|...+.++.|+| ++.++++++.| +.|++||+.+++....+.
T Consensus 22 ~~~~~v~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD--VERIHGGGINTLDIEPVEGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHHTEEECTTEE--ECCCCSSCEEEEEECTTTCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred cCcceeeccccCccee--eeeccCCcEEEEEEecCCCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccc
Confidence 4456778777644433 3447889999999999 99999999988 999999998876655443
Q ss_pred ---ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-CceEEEEeCCccCeEEEEE
Q 014977 132 ---FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEH 203 (415)
Q Consensus 132 ---~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~ 203 (415)
|...|.+++|+| ++.+++ .|+.|++||+.+++.+..+.. ...+..+.+.+.. ++.++++ ++.++.|++|+
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d 172 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAV-GTRGPKVQLCD 172 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEE-EESSSSEEEEE
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEE-EcCCCeEEEEe
Confidence 888999999999 655555 599999999999988887763 3434444555433 3445655 67899999988
Q ss_pred cC-CcceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCc-EEEEEec-------------CCCcccEEEE
Q 014977 204 FG-LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGT-RLQEVRR-------------GVDRAEIYSI 267 (415)
Q Consensus 204 ~~-~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~-~~~~~~~-------------~~~~~~v~~l 267 (415)
.. .+.+..+..|...|.+++|+|++. +|++++.||. |++||++++. .+..+.. ..|...|.++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 76 456778889999999999999998 6999999999 9999998775 3434311 1267789999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (415)
+|+|++++|++++.||.|++||+.+++.......+............. ..+....-.+..... .-.+|+
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~i~v~d 320 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV----------SCGCSSEFVFVPYGS-TIAVYT 320 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE----------CCSSSSCEEEEEETT-EEEEEE
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE----------ecCCCceEEEEecCC-EEEEEE
Confidence 999999999999999999999999887643222110000000000000 000000000000000 001111
Q ss_pred --cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 348 --SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 348 --~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.......+..+...+..++|+++ ..|++++.||.|++|++..
T Consensus 321 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred CcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 12233344445567788999998 7788888899999999986
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.4e-28 Score=235.38 Aligned_cols=245 Identities=11% Similarity=0.062 Sum_probs=185.4
Q ss_pred cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...+|.+.|++|+|+| ++.+|++|+ |+.|+|||+++.........+.....+.++.|++++.++++++.| +.|
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i 233 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNV 233 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBE
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcE
Confidence 3468999999999998 688999999 999999999875433333333455667889999999999999988 999
Q ss_pred EEEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCceE
Q 014977 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 188 (415)
++||+.. +.+..+. |...|.+++|+|++. +++ .|+.|++||+++.+....+ ..|.. .+.++.+++++.+
T Consensus 234 ~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~ 310 (435)
T 4e54_B 234 ILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGAR 310 (435)
T ss_dssp EEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSE
T ss_pred eeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc--cccceeECCCCCe
Confidence 9999864 4455555 899999999999875 444 5899999999876654433 34554 5667778888888
Q ss_pred EEEeCCccCeEEEEEcCC-cceEEEecCcc------ceEEEEeCCCCCEEEEEe------------CCCcEEEEEECCCC
Q 014977 189 LACPGLQRGQVRIEHFGL-NMIKLINAHDS------HIACFTLTLDGLLLATAS------------TRGTLIRIFNTVDG 249 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~------~i~~l~~sp~g~~l~s~s------------~dg~~I~vwd~~~~ 249 (415)
|++ ++.||.|++|+... .....+..|.. .+....|+|++.+++++. .++. |++||..++
T Consensus 311 l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-i~iwd~~~g 388 (435)
T 4e54_B 311 LLT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT-IDVFDGNSG 388 (435)
T ss_dssp EEE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC-EEEECSSSC
T ss_pred eEE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE-EEEEECCCC
Confidence 876 66899999998764 44555554432 233456777777666654 2356 999999999
Q ss_pred cEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 250 TRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.+..+..+ |...|.++ +|+|+|++|++|+ |++|+||++++++.
T Consensus 389 ~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 389 KMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred cEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 999888654 66778877 6999999999876 78999999998874
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=221.09 Aligned_cols=245 Identities=13% Similarity=0.109 Sum_probs=199.4
Q ss_pred ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEee--eCCeEEEEecCCCCCCCCC
Q 014977 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF--RCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~~~~~ 114 (415)
....+|...|.+++|+|++++|++++ |+.|++||+++.+.... ..+...+.++.| ++++..+++++.| +
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g 151 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWD-----K 151 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETT-----S
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCC-----C
Confidence 34567999999999999999999999 99999999998654432 267778888888 8999999999988 9
Q ss_pred eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEe--ccCCCcceEEEecCCCc--eEE
Q 014977 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE--TLANLRGLCCLSHHSST--SVL 189 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l 189 (415)
.|++||+.+++.+..+.....+.++.+.++..+++ .++.+++|++.......... ..........+.+.... ..+
T Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 99999999999999999778889999988866666 79999999997754433322 22233345555554432 225
Q ss_pred EEeCCccCeEEEEEcCC----cceEEEecCcc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 190 ACPGLQRGQVRIEHFGL----NMIKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 190 ~~~g~~dg~v~i~~~~~----~~~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
++ ++.||.|++|+... ..+..+..|.. .|.+++|+|++++|++++.||. |++||+.+++.+.
T Consensus 232 ~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 232 AL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLK 309 (368)
T ss_dssp EE-EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEE
T ss_pred EE-ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEE
Confidence 44 67899999999876 45677778876 7999999999999999999999 9999999999999
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+.. |...|.+++|+|+|++|++++.|+..+.|++...+
T Consensus 310 ~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 310 TSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp ECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred EecC--CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 9887 78899999999999999999999876666655444
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.7e-26 Score=212.74 Aligned_cols=286 Identities=12% Similarity=0.124 Sum_probs=193.8
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE-ccCceeEEEEcC--CeEEEE---eCC
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-FRSDVRSVKLSR--DRIVVV---LEH 152 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~ 152 (415)
+.+|...|.++.|++++.++++++.| +.|++||+.++ +.+..+. |...|.+++|+| ++.+++ .|+
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CcccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 34788899999999999999999988 99999999876 3555555 899999999999 476666 699
Q ss_pred eEEEEEcCCc---------eeeeEEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc-ceEEE--------
Q 014977 153 KIYVYSFVDL---------KLLHQIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN-MIKLI-------- 212 (415)
Q Consensus 153 ~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~-~~~~~-------- 212 (415)
.|++||+.++ +.+..+..|... +.++.++++ +.++++ ++.||.|++|+.... .+..+
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGS--LYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSC--EEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCc--eeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhccccccccccc
Confidence 9999999876 556677777764 445555555 677776 668999999986542 22211
Q ss_pred -----ecCccceEEEEeCCC---CCEEEEEeCCCcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCC----CEEEE
Q 014977 213 -----NAHDSHIACFTLTLD---GLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNV----QWLAV 278 (415)
Q Consensus 213 -----~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg----~~l~s 278 (415)
..|...+.+++|+|+ +.+|++++.++. +.+|+...++. +..+.. |...|.+++|+|++ ++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPG--HKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCC--CCSCEEEEEECCCSSCSSEEEEE
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCC--CCcceeEEEECCCCCCcceEEEE
Confidence 157788999999997 899999999999 98888877765 445555 88899999999998 89999
Q ss_pred EeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc--ccceEEEE
Q 014977 279 ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS--EWSFAQFH 356 (415)
Q Consensus 279 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 356 (415)
++.||.|++||++++........... .......+.............+.. .....+.. ......++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLT----NSNMFDNSADVDMDAQGRSDSNTE--------EKAELQSNLQVELLSEHD 303 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------------------CCSEEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCccc----ceeccCCCcccccccccccccccc--------eeeeecccccccEEEEEe
Confidence 99999999999998764332111100 000000000000000000000000 00001110 11122233
Q ss_pred eCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977 357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH 391 (415)
Q Consensus 357 ~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~ 391 (415)
-....+..++|+++ +.|++++.||.|++|++...+
T Consensus 304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 34467888999998 668888889999999998743
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2.6e-27 Score=218.44 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=190.0
Q ss_pred CCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEc-cCCceeEEEeccC--CCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 40 SDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC-EPFKETFRRDLKS--GGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
..+|...|.+++|+|+++ +|++|+ |+.|++|++ ++... ..+.. +...+.++.|++ +..+++++.| +
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-----~ 122 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWD-----G 122 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETT-----S
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCC-----C
Confidence 457999999999999999 999999 999999999 76543 23446 888999999999 7778888877 9
Q ss_pred eEEEEECCC---------CCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecC
Q 014977 115 KVIIWDDHQ---------SRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 115 ~i~vwd~~~---------~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (415)
.|++||+.+ ++++..+.+...|.+++|++++.+++ .++.|++||+.+ +..............+.++.++
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence 999999887 77666667889999999999993333 789999999987 5543222222222356677777
Q ss_pred C-CceEEEEeCCccCeEEEEEcCC-------cceEEEecCcc---------ceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 184 S-STSVLACPGLQRGQVRIEHFGL-------NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 184 ~-~~~~l~~~g~~dg~v~i~~~~~-------~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
+ ++.++++ ++.||.|++|+.+. .....+..|.. .|.+++|+|++++|++++.||. |++||+
T Consensus 203 ~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~ 280 (342)
T 1yfq_A 203 PKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNL 280 (342)
T ss_dssp SGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEET
T ss_pred CCCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcC
Confidence 7 7777776 66899999988754 55677888765 9999999999999999999999 999999
Q ss_pred CCCcEEEEEecCCC-cccEEEEEeCCCCCEEEEEeCCCe
Q 014977 247 VDGTRLQEVRRGVD-RAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 247 ~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
.+++.+..+.. | ...|.+++ |++++|++++.||.
T Consensus 281 ~~~~~~~~~~~--~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 281 QTRKKIKNFAK--FNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TTTEEEEECCC--CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccHhHhhhhhc--ccCCCceEec--CCCCeEEEEecCCc
Confidence 99999988887 5 88999999 99999999999997
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.5e-27 Score=222.25 Aligned_cols=252 Identities=11% Similarity=0.135 Sum_probs=188.9
Q ss_pred CCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCC----------CCEEEEEE-ccCceeEEEEcCCeE-EEE--
Q 014977 85 SGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ----------SRCIGEFA-FRSDVRSVKLSRDRI-VVV-- 149 (415)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~----------~~~~~~~~-~~~~i~~l~~~~~~~-~~~-- 149 (415)
.|...+.++.|+++ ..++++++.+ |.|++||+.+ .+.+..+. |...|.+++|+|++. +++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 56777888999997 6788888887 9999999876 56666666 899999999999876 555
Q ss_pred -eCCeEEEEEcCCcee-------eeEEeccCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCC----cceEEEecCc
Q 014977 150 -LEHKIYVYSFVDLKL-------LHQIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGL----NMIKLINAHD 216 (415)
Q Consensus 150 -~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~~~~ 216 (415)
.||.|++||+.++.. ...+..|... +.++.+++ ++.++++ ++.|+.|++|+.+. ..+..+..|.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~l~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAV--VEDVAWHLLHESLFGS-VADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSC--EEEEEECSSCTTEEEE-EETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCC--EeeeEEeCCCCCEEEE-EeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 689999999987322 3445566664 44455555 3445554 66899999999875 3677788999
Q ss_pred cceEEEEeCCCCC-EEEEEeCCCcEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceec
Q 014977 217 SHIACFTLTLDGL-LLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 217 ~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~ 293 (415)
..|++++|+|++. +|++|+.||. |++||+++ +..+..+.. |...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999987 7899999999 99999998 566778887 788999999999985 6899999999999999885
Q ss_pred ccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-C-
Q 014977 294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-N- 371 (415)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 371 (415)
........ .....+. .+..+......+..++|+++ .
T Consensus 355 ~~~~~~~~------------------------------------~~~~~~~------~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 355 GEEQSTED------------------------------------AEDGPPE------LLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp TCCCCHHH------------------------------------HHHCCTT------EEEECCCCSSCEEEEEECSSSTT
T ss_pred ccccCccc------------------------------------cccCCcc------eEEEcCCCCCCceEEEECCCCCC
Confidence 43210000 0000000 00111112345677899998 3
Q ss_pred EEEEEEeCCcEEEEEEec
Q 014977 372 TVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 372 ~i~~~~~dg~~~~~~~~~ 389 (415)
.+++++.||.|++|+++.
T Consensus 393 ~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 393 IICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEEETTSEEEEEEECH
T ss_pred EEEEEECCCCEEEeEccc
Confidence 677788899999999975
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=7.4e-26 Score=212.96 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=179.6
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
.++++++ ++.|++||+++.+...... +...+.++.|++++..+ ++++.+ +.|++||+.+++.+..+.+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP---VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee---cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC
Confidence 3566777 9999999999866544432 33457899999998654 666666 999999999999999998777
Q ss_pred ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cce
Q 014977 135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI 209 (415)
Q Consensus 135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~ 209 (415)
.+.+++|+|++..++ .++.|++||+.+++.+..+..+. .+..+.+++++..++++++.++.|++|+... +.+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 999999999998765 46999999999999888777554 4566777777877766677899999998765 444
Q ss_pred EEEecCccceEEEEeCCCCCEE-EEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeE
Q 014977 210 KLINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTV 285 (415)
Q Consensus 210 ~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i 285 (415)
..+..+ ..+..++|+|+|++| ++++.++. |++||+++++.+..+. +...+.+++|+|++++|++++ .++.|
T Consensus 152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred EEEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 555544 566999999999987 56778888 9999999998887776 345789999999999999888 68999
Q ss_pred EEEEceeccc
Q 014977 286 HIFSLRVRVV 295 (415)
Q Consensus 286 ~vwd~~~~~~ 295 (415)
++||+++++.
T Consensus 227 ~~~d~~~~~~ 236 (391)
T 1l0q_A 227 SMIDTGTNKI 236 (391)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCeE
Confidence 9999987753
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=6.9e-27 Score=218.24 Aligned_cols=279 Identities=12% Similarity=0.071 Sum_probs=205.8
Q ss_pred CCceEEEEEeCCCCEEEEEe-C-------CcEEEEEccCCce--------eEEEeccCCCeeEEEEeeeCCeEEEE----
Q 014977 44 EIELISVSWNQDYGCFAAGT-S-------CGFRIYNCEPFKE--------TFRRDLKSGGFRIVEMLFRCNILALV---- 103 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d-------~~v~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~---- 103 (415)
.-+|++++|+||+++|++|+ + +.|++|+++.... .....+..+...+.++.++.+..+..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45799999999999999986 3 2499999975432 12234556777777887776644332
Q ss_pred -----ecCCCCCCCCCeEEEEECCCCCE-EEEEE---------ccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCce
Q 014977 104 -----GAGDNSQYPPTKVIIWDDHQSRC-IGEFA---------FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLK 163 (415)
Q Consensus 104 -----s~~~d~~~~~~~i~vwd~~~~~~-~~~~~---------~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~ 163 (415)
+++.+ +.+++|++.+... +.... +...+..++|+|||++++ .|+.|+|||+.+++
T Consensus 94 ~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 94 STKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp HHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred ccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 23334 8999999766532 22221 234588999999998865 47999999999999
Q ss_pred eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE--EecCccceEEEEeCCCCCEEEEEeCCC---
Q 014977 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL--INAHDSHIACFTLTLDGLLLATASTRG--- 238 (415)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg--- 238 (415)
.+..+. +.. .+.+++++|++.++++ ++.++.+.+|...+..+.. ...|...|.+++|+|+|+++++++.|+
T Consensus 169 ~~~~~~-~~~--~V~~v~fspdg~~l~s-~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 169 EKFEIE-TRG--EVKDLHFSTDGKVVAY-ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEEEE-CSS--CCCEEEECTTSSEEEE-ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred EEEEeC-CCC--ceEEEEEccCCceEEe-ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 988886 444 3556666778888876 5555554446666655433 356888999999999999999999887
Q ss_pred -cEEEEEECCCCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccc
Q 014977 239 -TLIRIFNTVDGTR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELL 313 (415)
Q Consensus 239 -~~I~vwd~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (415)
. +++||+..+.. ...+.. |...|++++|+|||++||+|+.|++|+|||+++++...+..
T Consensus 245 ~~-i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~------------- 308 (365)
T 4h5i_A 245 IV-LTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK------------- 308 (365)
T ss_dssp EE-EEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------------
T ss_pred eE-EeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------------
Confidence 5 88899877653 234555 77899999999999999999999999999999887432100
Q ss_pred cCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 314 NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+.....+..++|+|+ ..|++++.||+|+||.++.
T Consensus 309 ------------------------------------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 309 ------------------------------------------QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ------------------------------------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ------------------------------------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 112356778999999 6677788899999999975
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=8.7e-27 Score=222.85 Aligned_cols=235 Identities=13% Similarity=0.269 Sum_probs=188.8
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+|...|.+++| ++++|++|+ ||.|++||+++.+.... +..|...+.++.|+++ .+++++.| +.|+
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~--~l~s~s~d-----g~i~ 236 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNG--MMVTCSKD-----RSIA 236 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTT--EEEEEETT-----SCEE
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCC--EEEEeeCC-----CcEE
Confidence 35689999999999 788999999 99999999998765444 4478888999999865 56677776 9999
Q ss_pred EEECCCCCEE---EEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 118 IWDDHQSRCI---GEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 118 vwd~~~~~~~---~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
+||+.+++.+ ..+. |...|.++++..+....+ .|+.|++||+.+++.+..+..|...+ .++.+++ .++++
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~--~~l~~- 311 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD--RLVVS- 311 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEEET--TEEEE-
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE--EEEEeCC--CEEEE-
Confidence 9999888755 3333 889999999954433333 69999999999999999998887744 4555543 45655
Q ss_pred CCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc---------EEEEEecCCCcc
Q 014977 193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT---------RLQEVRRGVDRA 262 (415)
Q Consensus 193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~---------~~~~~~~~~~~~ 262 (415)
|+.||.|++|+.. ++.+..+.+|...|.+++| ++.+|++|+.||. |++||+.+++ .+..+.. |.+
T Consensus 312 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~ 386 (435)
T 1p22_A 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSG 386 (435)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSS
T ss_pred EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC--CCC
Confidence 6789999999876 5678889999999999999 7889999999999 9999997766 7888877 888
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.|.+++| ++.+|++++.||+|++||+.++...
T Consensus 387 ~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 387 RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 9999999 7889999999999999999987654
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-28 Score=232.90 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=177.6
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+-...|.+++|+|||+++|+++ |++|+ +....+. +.+|...+..+.|+|++ .+ +.+.
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~-----~~~~ 70 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FE-----NKLD 70 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CC-----CTTT
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------Cc-----ceEE
Confidence 3456678899999999999999999 99999 6544332 34788999999999988 23 6666
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC---CcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN---LRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 191 (415)
+|+.+ +..+..+.+...|.+++|+|+|..++ .||.|++||.+. ++..+. |.. ...+.+++++|++++|++
T Consensus 71 ~~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 71 FELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp TSCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred EEeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 77643 22233334678999999999999888 699999999543 555555 443 124678888888999987
Q ss_pred eCCccCeEEEEEcCCcc--------eEEE----ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE---EEEEe
Q 014977 192 PGLQRGQVRIEHFGLNM--------IKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---LQEVR 256 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~--------~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---~~~~~ 256 (415)
|+.||+|+||+..... +..+ .+|...|.+++|+|+| |++++.|+. |++||+..++. ..++.
T Consensus 147 -gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 147 -GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp -EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEE
T ss_pred -EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeec
Confidence 6689999999988764 4666 5677899999999999 788899999 99999988773 35664
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
.+ |...|.+++|+ |+.||+++ +++|++||+.+++.
T Consensus 223 ~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 223 NA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp CC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred cc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 32 67789999999 68999887 69999999998764
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.2e-25 Score=208.59 Aligned_cols=238 Identities=10% Similarity=0.035 Sum_probs=194.3
Q ss_pred CCceEEEEEeCCCCEE-EEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd 120 (415)
...+.+++|+|++++| ++++ ++.|++||+.+.+...... . ...+.++.|++++..+ +++..+ +.|++||
T Consensus 31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~-~~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d 102 (391)
T 1l0q_A 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--A-GSSPQGVAVSPDGKQVYVTNMAS-----STLSVID 102 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--C-CCCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence 3458999999999987 5665 9999999998866554433 2 2378899999988655 555555 9999999
Q ss_pred CCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+.+++.+..+.+...+.+++|+|++..++ .++.|++||+.+++.+..+..+.. ...+.+++++..+++++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTT
T ss_pred CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeCCC
Confidence 99999999888878899999999988663 589999999999998888876543 45666777777776667789
Q ss_pred CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
+.|++|+...........+...+.+++|+|+|++|++++ .++. |++||+.+++.+..+.. + ..+.+++|+|++
T Consensus 180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg 255 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV--G-PDPAGIAVTPDG 255 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC--C-SSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEec--C-CCccEEEEccCC
Confidence 999999987765555555677899999999999998888 6888 99999999999888886 3 357899999999
Q ss_pred CEE-EEEeCCCeEEEEEceecccC
Q 014977 274 QWL-AVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 274 ~~l-~s~s~dg~i~vwd~~~~~~~ 296 (415)
++| ++++.|+.|++||+.+++..
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEE
Confidence 987 56788999999999987754
No 115
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=221.88 Aligned_cols=199 Identities=11% Similarity=0.149 Sum_probs=157.4
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----------EEEEEE-cc------------CceeEEE
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFA-FR------------SDVRSVK 140 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----------~~~~~~-~~------------~~i~~l~ 140 (415)
.+...|.++.|++++.+|++++.| +.|++||+.+++ .+..+. |. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 346789999999999999999988 999999998876 466666 76 8899999
Q ss_pred EcCCe--EEEE---eCCeEEEEEcCCceee---------------------------------------eE-EeccCCCc
Q 014977 141 LSRDR--IVVV---LEHKIYVYSFVDLKLL---------------------------------------HQ-IETLANLR 175 (415)
Q Consensus 141 ~~~~~--~~~~---~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~~ 175 (415)
|+|++ ..++ .|+.|++||+.+++.. .. ...|..
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-- 178 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-- 178 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS--
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc--
Confidence 99997 4444 7999999998764432 11 234555
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcC-Cc-ceE-------EEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEE
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LN-MIK-------LINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFN 245 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~-~~~-------~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd 245 (415)
.+.++.+++++.+|++ | .|+.|++|+.. .. .+. .+..|...|.+++|+|++ ++|++++.||. |++||
T Consensus 179 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd 255 (447)
T 3dw8_B 179 HINSISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCD 255 (447)
T ss_dssp CCCEEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEE
T ss_pred ceEEEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEE
Confidence 4455556667778876 5 69999999987 32 233 245789999999999998 99999999999 99999
Q ss_pred CCCCcE----EEEEecCCCcc------------cEEEEEeCCCCCEEEEEeCCCeEEEEEcee-cccC
Q 014977 246 TVDGTR----LQEVRRGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRV-RVVG 296 (415)
Q Consensus 246 ~~~~~~----~~~~~~~~~~~------------~v~~l~~spdg~~l~s~s~dg~i~vwd~~~-~~~~ 296 (415)
+++++. +..+.. |.. .|.+++|+|+|++|++++. +.|+|||+++ ++..
T Consensus 256 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 256 MRASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp TTTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred CcCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 999886 677776 444 8999999999999999999 9999999987 5433
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.5e-26 Score=218.30 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=162.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE---EeccCCCeeEEEEeeeC--------CeEEEEecCCCC
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR---RDLKSGGFRIVEMLFRC--------NILALVGAGDNS 109 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~l~s~~~d~ 109 (415)
.|...+....+++++.+||+++ |++|+||+.++.+.... ..+.+|...|.++.|+| ++.+|++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D- 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD- 165 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-
Confidence 3444455555566777899999 99999999987654332 23568899999999987 78999999998
Q ss_pred CCCCCeEEEEECCCCCEEEEE-EccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEe---------------
Q 014977 110 QYPPTKVIIWDDHQSRCIGEF-AFRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIE--------------- 169 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~--------------- 169 (415)
++|+|||+.++..+..+ .|...+.+++|+|++. +++ .|+.|++||+.+++......
T Consensus 166 ----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 166 ----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp ----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred ----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 99999999887766555 4899999999999875 455 69999999998776543322
Q ss_pred ----------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEecCccceEEE----------------
Q 014977 170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACF---------------- 222 (415)
Q Consensus 170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l---------------- 222 (415)
.+...+..+.+. .+++..+++ ++.|+++++|+.... ....+..|...+..+
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s-~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWI-GSDGSGILA-MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp GGGC------CCSSSCSEEEEE-TTTTCEEEE-ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred ccceeeeecccccccceeeeee-cCCCCEEEE-EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 222222333332 256667765 678999999987542 233333333333322
Q ss_pred --EeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 223 --TLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 223 --~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
.++| ++.++++|+.||. |+|||+.+++.+..+.. |..+|.+++|+|||++||+++.+| +.+|++..
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred eEEEccCCCCEEEEEECCCCE-EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 2332 3446778889999 99999999988877776 677999999999999999999877 77777653
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.8e-25 Score=199.47 Aligned_cols=241 Identities=9% Similarity=0.104 Sum_probs=163.0
Q ss_pred ceEEEEEeCCCC---EEEEEeCCcEEEEEccCC---ceeEEEeccC-----------------------CCeeEEEEeee
Q 014977 46 ELISVSWNQDYG---CFAAGTSCGFRIYNCEPF---KETFRRDLKS-----------------------GGFRIVEMLFR 96 (415)
Q Consensus 46 ~V~~l~~sp~g~---~la~g~d~~v~iw~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~~ 96 (415)
.+.++-|-..|- .++++++..|++|+.... ++.+...++. +...+..++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 355666655443 666777999999999876 4444433311 11245567777
Q ss_pred CC----eEEEEecCCCC---------------CCCCCeEEEEEC-CCCCEEEEEE-ccCceeEEEEcC---CeEEEE---
Q 014977 97 CN----ILALVGAGDNS---------------QYPPTKVIIWDD-HQSRCIGEFA-FRSDVRSVKLSR---DRIVVV--- 149 (415)
Q Consensus 97 ~~----~~~l~s~~~d~---------------~~~~~~i~vwd~-~~~~~~~~~~-~~~~i~~l~~~~---~~~~~~--- 149 (415)
|+ +..+++++.+. ...++.|++|++ .+|+.+..+. |...+..++|++ ++.+++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 88 66666654210 012488888887 4477766666 777888888887 567777
Q ss_pred eCCeEEEEEcCCceeeeEEeccCC-CcceEEEecCCCceEEE-----------EeCCccCeEEEEEcCCcce-EEE----
Q 014977 150 LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLA-----------CPGLQRGQVRIEHFGLNMI-KLI---- 212 (415)
Q Consensus 150 ~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-----------~~g~~dg~v~i~~~~~~~~-~~~---- 212 (415)
.|++|+|||+.++++++++.++.. ...+.+++++|++.+++ .+|+.|++|++|+...... ..+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 599999999999999999976543 22344445555666652 4578999999998765443 333
Q ss_pred -ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc-EEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 213 -NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 213 -~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
.+|...+.+..+ ++.++++++.|++ |+|||+.+++.+.++.+ |... +..++|+|||++|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 255555444444 3788999999999 99999999999999987 5554 446899999999999999999999996
Q ss_pred e
Q 014977 291 R 291 (415)
Q Consensus 291 ~ 291 (415)
.
T Consensus 356 ~ 356 (356)
T 2w18_A 356 S 356 (356)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=6.5e-25 Score=209.39 Aligned_cols=237 Identities=10% Similarity=0.077 Sum_probs=193.4
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVII 118 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~v 118 (415)
.+|...|.+++|+++++++++++ ++.|++||+++.+..... ..+...+..+.|++++..+ +++..+ +.|++
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~ 238 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWIS-----EDISV 238 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCC-----CcEEE
Confidence 47888999999999999999999 999999999876655443 3667788899999987555 565566 99999
Q ss_pred EECCCCCEEEEEEccCceeEEEEcCCeEEEE--e---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
||+.+++.+..+.....+.+++|+|++..++ . |+.|++||+.+++.+..+.... ....+.+++++.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~ 315 (433)
T 3bws_A 239 IDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTEN 315 (433)
T ss_dssp EETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTT
T ss_pred EECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCC
Confidence 9999999888888777899999999997666 2 6799999999988877663322 345566677776
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---------------CCcEEEEEECCCCcEE
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---------------RGTLIRIFNTVDGTRL 252 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---------------dg~~I~vwd~~~~~~~ 252 (415)
.++++++.++.|++|+...........+...+.+++|+|+|++|++++. ||. |++||+.+++.+
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~ 394 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVK 394 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEE
Confidence 6666677899999999876544444457788999999999998888876 468 999999999998
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEce
Q 014977 253 QEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLR 291 (415)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~ 291 (415)
..+.. ...+.+++|+|+|++|++++. |+.|++|+++
T Consensus 395 ~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 88875 346899999999999998875 9999999986
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=236.38 Aligned_cols=247 Identities=12% Similarity=0.108 Sum_probs=192.4
Q ss_pred ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI 154 (415)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i 154 (415)
+.+|...|.++.|++++..+++++.| |.|++||+. +++.+..+. |...|.+++|+++ +.+++ .||.|
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred cccCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 45888999999999999999999888 999999987 445666666 8999999999987 77776 69999
Q ss_pred EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCC---
Q 014977 155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL--- 226 (415)
Q Consensus 155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp--- 226 (415)
++||+.+++ .+..+..|...+..++++++.++.++++ |+.||.|++|+.... ....+..|...|.+++|+|
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 999998886 5666667776544444444422667766 668999999998664 4566788999999999999
Q ss_pred ----------CCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCeEEEEE
Q 014977 227 ----------DGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHIFS 289 (415)
Q Consensus 227 ----------~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd 289 (415)
++.+|++|+.||. |++||++++ .....+.. |...|.+++|+|+ +++|++++.||.|++||
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999999999 999999877 44556666 7889999999999 89999999999999999
Q ss_pred ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS 369 (415)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (415)
+.+++........ .. ......+..++|++
T Consensus 236 ~~~~~~~~~~~~~-----------------------------------------~~----------~~~~~~v~~l~~sp 264 (753)
T 3jro_A 236 QDNEQGPWKKTLL-----------------------------------------KE----------EKFPDVLWRASWSL 264 (753)
T ss_dssp ESSSSSCCBCCBS-----------------------------------------SS----------SCCSSCCCCEEECT
T ss_pred CCCCCCcceeEEe-----------------------------------------cc----------CCCCCceEEEEEcC
Confidence 9987532100000 00 00113445578999
Q ss_pred C-CEEEEEEeCCcEEEEEEec
Q 014977 370 Q-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 370 ~-~~i~~~~~dg~~~~~~~~~ 389 (415)
+ ..+++++.||.|++|++..
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 8 6677788899999999874
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.7e-25 Score=211.74 Aligned_cols=241 Identities=8% Similarity=0.003 Sum_probs=187.2
Q ss_pred CCCCCCceEEEEEeCCCCEE-EEEe-CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 40 SDVDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
..+|.+.|.+++|+|++++| ++|+ |+.|+||++. +.+.......+.+...+.++.|++++..+++++.+ +.
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~ 172 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GD 172 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----Cc
Confidence 35788899999999999996 7887 9999999998 65544433323566789999999999999998887 99
Q ss_pred EEEEECCCCCEEE----EEE-ccCceeEEEEcCC---eEEEE---eCCeEEEEEcCCceeeeE-EeccCCCcceEEEecC
Q 014977 116 VIIWDDHQSRCIG----EFA-FRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHH 183 (415)
Q Consensus 116 i~vwd~~~~~~~~----~~~-~~~~i~~l~~~~~---~~~~~---~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 183 (415)
|++|++.+++... .+. |...|.+++|+|+ +.+++ .|+.|++||+.+++.+.. +.+|...+ .++.++
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v--~~~~~s 250 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV--SSICCG 250 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCE--EEEEEC
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCce--EEEEEC
Confidence 9999998876543 444 8899999999999 88777 689999999999888877 44676644 444555
Q ss_pred CCceEEEEeCCccCeEEEEEcCC-cceEEEec-------------------------CccceEEEEeCCCCCEEEEEe-C
Q 014977 184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------------------------HDSHIACFTLTLDGLLLATAS-T 236 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-------------------------~~~~i~~l~~sp~g~~l~s~s-~ 236 (415)
++.+|++ ++.|+.|++|+... +.+..+.. ....+..++|+|++++|++++ .
T Consensus 251 -d~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 251 -KDYLLLS-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp -STTEEEE-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred -CCCEEEE-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 6677776 66899999999765 44555542 235688999999999999998 8
Q ss_pred CCcEEEEEEC--CCC---cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC------CCeEEEEEceec
Q 014977 237 RGTLIRIFNT--VDG---TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVR 293 (415)
Q Consensus 237 dg~~I~vwd~--~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~ 293 (415)
++. |+|||+ .++ +.+..+.. + ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 329 d~~-i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 329 TKC-IIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSE-EEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCe-EEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 888 999999 565 66667776 4 68999999996544444443 456899988754
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.4e-24 Score=204.64 Aligned_cols=228 Identities=12% Similarity=0.110 Sum_probs=156.0
Q ss_pred eeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE-----E-ccCceeEEEEcC--------CeEEEE---eCCeEEEE
Q 014977 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF-----A-FRSDVRSVKLSR--------DRIVVV---LEHKIYVY 157 (415)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~-----~-~~~~i~~l~~~~--------~~~~~~---~d~~i~iw 157 (415)
+.++..++++++.| ++|++||+.+++..... . |...|++++|+| |+++++ .|++|+||
T Consensus 97 ~~~~~~~las~~~d-----~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 97 SPVYSLFLACVCQD-----NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp CCEEEEEEEEEETT-----SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cCCCCCEEEEEeCC-----CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 34566789999988 99999999888765432 2 889999999997 788888 69999999
Q ss_pred EcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce--------------------------EE
Q 014977 158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI--------------------------KL 211 (415)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~--------------------------~~ 211 (415)
|+.++..+..+..+..+ +.++.++|++..++++|+.|++|++|+...... ..
T Consensus 172 d~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSP--GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEETTEEEEEEEECSSC--EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred ECCCCceeeeecCCCCC--cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 99888887777777774 455556666654344578999999998764221 11
Q ss_pred EecCccceEEEEeC-CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe------------------CC-
Q 014977 212 INAHDSHIACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL------------------SP- 271 (415)
Q Consensus 212 ~~~~~~~i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~------------------sp- 271 (415)
..+|...+.++.|+ |+|+.|++++.|+. +++||+.+++....+.. +...+..+.+ +|
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC---------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEccC
Confidence 24577788899986 89999999999999 99999988876666554 3333333333 22
Q ss_pred -CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977 272 -NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (415)
Q Consensus 272 -dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (415)
++.++++|+.||+|+|||+.+++...
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~----------------------------------------------------- 353 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNS----------------------------------------------------- 353 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCE-----------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEE-----------------------------------------------------
Confidence 34467788899999999998876431
Q ss_pred ceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEe
Q 014977 351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD 388 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~ 388 (415)
...-....+..++|+|+++.+++++++.+.+|.+.
T Consensus 354 ---~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 354 ---IPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ---EEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred ---EecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 11112345677899999666666677777777764
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8e-25 Score=202.48 Aligned_cols=189 Identities=18% Similarity=0.214 Sum_probs=148.1
Q ss_pred eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcC---------Cc
Q 014977 94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFV---------DL 162 (415)
Q Consensus 94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~---------~~ 162 (415)
.+..++..+++++.| +.|++||+.+++.+..+. ...|.++.++|+ ++. .|+.|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445678889999988 999999999999888877 456777788887 333 68888888654 44
Q ss_pred eeeeEEe-ccCCCcceEEEecCC--CceEEEEeCCccCeEEEEEcCCcce-EEEe-cCccceEEEEeCCCCCEEEEEeCC
Q 014977 163 KLLHQIE-TLANLRGLCCLSHHS--STSVLACPGLQRGQVRIEHFGLNMI-KLIN-AHDSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~g~~dg~v~i~~~~~~~~-~~~~-~~~~~i~~l~~sp~g~~l~s~s~d 237 (415)
+.+..+. .|.. .+.++.++| ++.++++ ++.||+|++|+...... .... .|...+.+++|+|+|.+|++|+.|
T Consensus 115 ~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 115 KVLREIEVDSAN--EIIYMYGHNEVNTEYFIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp CEEEEEECCCSS--CEEEEECCC---CCEEEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred ceeEEeecCCCC--CEEEEEcCCCCCCCEEEE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 5444443 3333 566777777 7888876 66899999999876544 3332 455689999999999999999999
Q ss_pred CcEEEEEECCCCcEE-EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 238 GTLIRIFNTVDGTRL-QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 238 g~~I~vwd~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
|. |++||+++++.+ ..+... |...|.+++|+|++.+|++++ |+.|++||+++++..
T Consensus 192 g~-i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 192 GI-LDVYNLSSPDQASSRFPVD-EEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp SC-EEEEESSCTTSCCEECCCC-TTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred CE-EEEEECCCCCCCccEEecc-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 99 999999999877 667652 678999999999999999999 459999999987653
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=6.1e-24 Score=193.69 Aligned_cols=230 Identities=13% Similarity=0.173 Sum_probs=173.2
Q ss_pred EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee
Q 014977 91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL 164 (415)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~ 164 (415)
..+.|++++ +|+.+. | ++|+|||+.+++++..+. |...|.+++|+|++++++ .|+.|++||+++++.
T Consensus 29 ~~l~WS~~~-~lAvg~-D-----~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL-D-----NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp BCEEECTTS-EEEEEE-T-----TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEECCCC-EEEEEe-C-----CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 447788887 445443 4 999999999999998886 677899999999999888 699999999999999
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIR 242 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~ 242 (415)
+..+..|.. .+.++++.+. ++++ ++.++.+++|.... ..+..+.+|...+..+.+++++++|++++.|+. |+
T Consensus 102 ~~~~~~h~~--~~~~~~~~~~--~l~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~ 175 (318)
T 4ggc_A 102 LRNMTSHSA--RVGSLSWNSY--ILSS-GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VN 175 (318)
T ss_dssp EEEEECCSS--CEEEEEEETT--EEEE-EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EE
T ss_pred EEEecCccc--eEEEeecCCC--EEEE-EecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-ee
Confidence 999988876 4556666543 5554 77899999977654 456678899999999999999999999999999 99
Q ss_pred EEECCCCcEE----EEEec------------------------------------------CCCcccEEEEEeCCCCCEE
Q 014977 243 IFNTVDGTRL----QEVRR------------------------------------------GVDRAEIYSIALSPNVQWL 276 (415)
Q Consensus 243 vwd~~~~~~~----~~~~~------------------------------------------~~~~~~v~~l~~spdg~~l 276 (415)
+||+++++.. ..... ..+...+..+.|+|++..+
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccce
Confidence 9999765311 11111 0012245566667766666
Q ss_pred EEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEE
Q 014977 277 AVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQ 354 (415)
Q Consensus 277 ~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (415)
++++ .|+.|+|||+++++... .
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~--------------------------------------------------------~ 279 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVA--------------------------------------------------------E 279 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEE--------------------------------------------------------E
T ss_pred EEEEEcCCCEEEEEECCCCcEEE--------------------------------------------------------E
Confidence 6544 57777777776665332 2
Q ss_pred EEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 355 FHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
++-+.+.+..++|+++ ..|++++.||.|++|++.+
T Consensus 280 l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 3333456778899998 6788888899999998865
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-25 Score=213.02 Aligned_cols=224 Identities=8% Similarity=-0.015 Sum_probs=176.1
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
...+|...|++++|+|+| .++.+.+|+.+. .....+ .+...|.++.|+|++..+++++.| |.|++
T Consensus 47 ~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~---~~~~~~-~~~~~V~~vawSPdG~~LAs~s~d-----g~V~i 111 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE------FENKLDFELAQQ---NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSV 111 (588)
T ss_dssp CCSSBGGGTEEEEEECCC------CCCTTTTSCCCS---SCSSTT-SCSCCEEEEEECSSSSCEEEEETT-----SCEEE
T ss_pred eecCCCccEEEEEECCCC------CcceEEEEeCCC---ceEeec-CCCCcEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence 346899999999999999 455555555432 122223 447789999999999999999998 99999
Q ss_pred EECCCCCEEEEEEccC-----ceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-------eeEE----eccCCCcceEE
Q 014977 119 WDDHQSRCIGEFAFRS-----DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-------LHQI----ETLANLRGLCC 179 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~-----~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-------~~~~----~~~~~~~~~~~ 179 (415)
||... ++..+.|.. .+.+++|+|||++++ .||+|++||+.+++. +..+ .+|.. .+.+
T Consensus 112 wd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~--~V~s 187 (588)
T 2j04_A 112 FKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD--WVTH 187 (588)
T ss_dssp EETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC--CEEE
T ss_pred EeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc--cEEE
Confidence 99544 555555443 599999999999998 699999999988753 5565 33444 6777
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCCcce----EEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMI----KLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~----~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
++++|++ +++ ++.|++|++|+...... +.+ .+|...|.+++|+ |+.||+++ ++. |++||+.+++....
T Consensus 188 VawSPdg--Laa-ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~ 260 (588)
T 2j04_A 188 IVWYEDV--LVA-ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSL 260 (588)
T ss_dssp EEEETTE--EEE-EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEE
T ss_pred EEEcCCc--EEE-EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEE
Confidence 7777887 444 45799999999877653 346 4788999999999 68999988 688 99999987776433
Q ss_pred EecCCCcccEEEEEe--CCCCCEEEEEeCCCeEEEEEce
Q 014977 255 VRRGVDRAEIYSIAL--SPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~--spdg~~l~s~s~dg~i~vwd~~ 291 (415)
..+ |.+.|.+++| +||+..|++++.||+ ++|.++
T Consensus 261 ~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 261 KTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 334 8889999999 999999999999999 999986
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=2.8e-23 Score=186.57 Aligned_cols=234 Identities=12% Similarity=0.140 Sum_probs=160.8
Q ss_pred eEEEEeeeCCe---EEEEecCCCCCCCCCeEEEEECCCC---CEEEEEE-ccC-------------------------ce
Q 014977 89 RIVEMLFRCNI---LALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFA-FRS-------------------------DV 136 (415)
Q Consensus 89 ~~~~~~~~~~~---~~l~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~-------------------------~i 136 (415)
.+..+.|-..+ ..+++++. ..|++|+..++ +.+++.. |.. .|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~------~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v 114 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE------DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREI 114 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES------SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred EEeeeeeccCCCCccEEEEecc------ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccce
Confidence 34455554433 36666666 79999998888 6666665 332 56
Q ss_pred eEEEEcCC----eEEEEe-----------------------CCeEEEEEc-CCceeeeEEeccCCCcceEEEec-CCCce
Q 014977 137 RSVKLSRD----RIVVVL-----------------------EHKIYVYSF-VDLKLLHQIETLANLRGLCCLSH-HSSTS 187 (415)
Q Consensus 137 ~~l~~~~~----~~~~~~-----------------------d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (415)
+.++++|+ ++.++. |+.|++|++ .+++.+..+..|...+.+++|++ .+++.
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp EEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred EEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 67777777 555541 677778887 44777777777777777788887 55666
Q ss_pred EEEEeCCccCeEEEEEcC-CcceEEEecCcc---ceEEEEeCCCCCEE------------EEEeCCCcEEEEEECCCCcE
Q 014977 188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDS---HIACFTLTLDGLLL------------ATASTRGTLIRIFNTVDGTR 251 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~---~i~~l~~sp~g~~l------------~s~s~dg~~I~vwd~~~~~~ 251 (415)
+|++ |+.|++|+||+.. ++.++++.+|.. .+.+++|+|+|+++ ++|+.|++ |++||..+++.
T Consensus 195 ~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~ 272 (356)
T 2w18_A 195 ALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS 272 (356)
T ss_dssp EEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEE
T ss_pred eEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE
Confidence 7765 7799999999987 567888886543 57778999999876 56788899 99999999998
Q ss_pred EEEEe---cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977 252 LQEVR---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG 328 (415)
Q Consensus 252 ~~~~~---~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (415)
+..+. ...|...+.+..++ +.++++++.|++|+|||+.+++...++..|
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH-------------------------- 324 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV-------------------------- 324 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--------------------------
T ss_pred EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC--------------------------
Confidence 77653 11144444444443 789999999999999999999865432222
Q ss_pred CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977 329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (415)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~ 387 (415)
.......++|+|+ ..|++++.||+|++|++
T Consensus 325 -----------------------------~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 -----------------------------SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----------------------------CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 0122335799999 56777888999999986
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.2e-22 Score=188.75 Aligned_cols=233 Identities=11% Similarity=0.068 Sum_probs=175.7
Q ss_pred ceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 46 ELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
.+..+++.+++..++. ++ ++.|+|||..+.+...... +...+.++.++++...++. + +.|++||+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~---~-----~~i~i~d~~~ 128 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSY---G-----DVISVFKFGN 128 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEE---T-----TEEEEEESST
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEE---c-----CEEEEEECCC
Confidence 5788899999888864 44 8899999999877655543 4457889999998876654 3 8999999988
Q ss_pred C-CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce----------------eeeEEeccCCCcceEEEecC
Q 014977 124 S-RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK----------------LLHQIETLANLRGLCCLSHH 183 (415)
Q Consensus 124 ~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 183 (415)
+ +.+..+.. ....+++++....+. .+|.|++||+.+++ .+..+..|.. .+.+++++
T Consensus 129 ~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s 204 (355)
T 3vu4_A 129 PWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLN 204 (355)
T ss_dssp TCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--CEEEEEEC
T ss_pred CceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--ceEEEEEC
Confidence 8 66555544 444456666433332 58999999998765 2667788877 45556666
Q ss_pred CCceEEEEeCCccCe-EEEEEcC-CcceEEEe-c-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE--EE---
Q 014977 184 SSTSVLACPGLQRGQ-VRIEHFG-LNMIKLIN-A-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL--QE--- 254 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~-v~i~~~~-~~~~~~~~-~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~--- 254 (415)
|++.+|++ |+.|++ |++|+.. ++.+..+. + |...|.+++|+|+|++|++++.|+. |+|||++.+... ..
T Consensus 205 ~~g~~l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 205 RKSDMVAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp TTSSEEEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTT
T ss_pred CCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccc
Confidence 67778876 678998 9999976 56777787 5 9999999999999999999999999 999999765311 11
Q ss_pred -----------------EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 255 -----------------VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 255 -----------------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+... .......++|++|+++|++++.||.+++|++..++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred eeeccccccccceeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 1110 1122366899999999999999999999999987754
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=4.8e-23 Score=195.51 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=175.9
Q ss_pred CCCceEEEEEeCCCC-EEEEEe-----CC----cEEEEEc--cCCceeEEEeccCCCeeEEEEeeeC-------------
Q 014977 43 DEIELISVSWNQDYG-CFAAGT-----SC----GFRIYNC--EPFKETFRRDLKSGGFRIVEMLFRC------------- 97 (415)
Q Consensus 43 h~~~V~~l~~sp~g~-~la~g~-----d~----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------- 97 (415)
+...+....|.+.|. ++++|+ +| .++|||+ .+.+.+....+..+...+..+.+.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788889998885 555665 46 7999999 8777655544545544444444432
Q ss_pred --CeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC---CeEEEEEcCCceeeeEE
Q 014977 98 --NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE---HKIYVYSFVDLKLLHQI 168 (415)
Q Consensus 98 --~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d---~~i~iwd~~~~~~~~~~ 168 (415)
... ++++.... .-..+.|++||+..+.......|...+.+++|+|+++.++ .+ ..|++||+.+++.. .+
T Consensus 141 ~~~~~l~~~s~~~~-~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp CTTCEEEEEEECSS-SSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred cCCCEEEEEEecCC-CCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 223 33332211 0011699999987555444444889999999999998887 34 49999999988775 34
Q ss_pred eccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-C--cEEEE
Q 014977 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-G--TLIRI 243 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~~I~v 243 (415)
..+.. .+.++.++|++..|+++++.++. |++|+........+..|...+.+++|+|||++|++++.+ + . |++
T Consensus 219 ~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~ 295 (415)
T 2hqs_A 219 ASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYK 295 (415)
T ss_dssp ECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEE
T ss_pred ecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEE
Confidence 44444 56677778888888866666554 777888777777888899999999999999998888764 4 5 888
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEceeccc
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVV 295 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~ 295 (415)
||+.+++.. .+.. +...+..++|+|||++|++++.+ ..|++||+.+++.
T Consensus 296 ~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 296 VNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred EECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 899887743 3443 45678999999999999988764 5899999987763
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=3.6e-21 Score=188.36 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=176.5
Q ss_pred EeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC--CCCCEEE
Q 014977 52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--HQSRCIG 128 (415)
Q Consensus 52 ~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~--~~~~~~~ 128 (415)
|+|++.+++++. ++.|.+||..+++.+..... ++. +..+.++|++.++++++.+ +.|.+||+ .+++.+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcEEE
Confidence 789998888888 99999999998776544332 233 6788899999999888887 99999999 8899999
Q ss_pred EEEccCceeEEEEcC----CeEEEE----eCCeEEEEEcCCceeeeEEeccCC---------CcceEEEecCCCceEEEE
Q 014977 129 EFAFRSDVRSVKLSR----DRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 129 ~~~~~~~i~~l~~~~----~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~ 191 (415)
++.+...+..++|+| ++++++ .+++|.+||..+++++..+..+.. ...+..+.+++++..+++
T Consensus 217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 998878899999999 988776 489999999999999988865321 114455666665555656
Q ss_pred eCCccCeEEEEEcCCc-ceE--EEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCC--CcccEE
Q 014977 192 PGLQRGQVRIEHFGLN-MIK--LINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV--DRAEIY 265 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~-~~~--~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~--~~~~v~ 265 (415)
+...++.|.+|+.... .+. .+ .+...+..+.|+|+|++|++++ .++. |.+||+.+++++..+..+. |.+...
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 6778999999887542 222 33 3566788999999999876655 5778 9999999999988887532 332233
Q ss_pred EEEeCCC-CCEEEEEe-CCCeEEEEEceec
Q 014977 266 SIALSPN-VQWLAVAS-DKGTVHIFSLRVR 293 (415)
Q Consensus 266 ~l~~spd-g~~l~s~s-~dg~i~vwd~~~~ 293 (415)
.+ ++|+ +.+++++. .|++|.|||+.+.
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 33 4677 66666665 5899999999874
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=3.4e-22 Score=203.73 Aligned_cols=238 Identities=11% Similarity=0.003 Sum_probs=176.1
Q ss_pred CCceEEEEEeCCCCEEEEEe--CC-----cEEEEEccCCceeEEEeccCCC----------------------eeEEEEe
Q 014977 44 EIELISVSWNQDYGCFAAGT--SC-----GFRIYNCEPFKETFRRDLKSGG----------------------FRIVEML 94 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~-----~v~iw~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 94 (415)
...|.+++|+|||++|++++ ++ .|++||+++.+.......+... ..+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 56799999999999999887 66 7999999886654433322222 3467889
Q ss_pred eeCCeEEEEecCCCCCCCCCeEEEEECCCC---CEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEe
Q 014977 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE 169 (415)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~ 169 (415)
|+|++..++.++. +.|.+||+.++ +......+...+..++|+|||+.++ .++.|++||+.+++......
T Consensus 116 ~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence 9999988887765 89999999988 5444334778899999999999887 78899999998887665443
Q ss_pred ccCCCc--------------ceEEEecCCCceEEEEeCCccC---------------------------------eEEEE
Q 014977 170 TLANLR--------------GLCCLSHHSSTSVLACPGLQRG---------------------------------QVRIE 202 (415)
Q Consensus 170 ~~~~~~--------------~~~~~~~~~~~~~l~~~g~~dg---------------------------------~v~i~ 202 (415)
.+...+ ....+.++|+++.|+++. .|+ .|.+|
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 322211 024456677777777743 332 56667
Q ss_pred EcCC-cceEEEe---cCccceEEEEeCCCCCEEEEEeC-----CCcEEEEEECCCCcEEEEEecCCCcc---cEEEEEeC
Q 014977 203 HFGL-NMIKLIN---AHDSHIACFTLTLDGLLLATAST-----RGTLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALS 270 (415)
Q Consensus 203 ~~~~-~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~-----dg~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~s 270 (415)
+... .....+. .|...+..++| |||++|++++. +.. |++||+.+++....+..+ ... .+..++|+
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSLRFL 345 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCCEEC
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCceEEC
Confidence 7665 5544443 47788999999 99999887654 456 999999999887666542 111 34688999
Q ss_pred CCCCEEEEEeCCCeEEEEEce
Q 014977 271 PNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 271 pdg~~l~s~s~dg~i~vwd~~ 291 (415)
|||+++++++.||.++||.++
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999999999999988888876
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.9e-21 Score=183.24 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=171.1
Q ss_pred CCEEEEEe-C------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977 56 YGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (415)
Q Consensus 56 g~~la~g~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~ 128 (415)
+..++.++ + +.|++||++... ... +..+...+.++.|+|++..++.++.+. ....|++||+.+++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~--l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFV--VHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQ 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEE--EEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEE--EeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEE
Confidence 55666555 3 689999998533 222 225667889999999998888777640 01499999999998876
Q ss_pred EEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEE
Q 014977 129 EFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVR 200 (415)
Q Consensus 129 ~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~ 200 (415)
...+...+.+++|+||++.++ . +..|++||+.+++. ..+..+.. .+..+.++|++..|++++..++ .|+
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC--cccceEECCCCCEEEEEECCCCCcEEE
Confidence 555888999999999998766 2 34699999988765 44544544 4566777788888887665556 555
Q ss_pred EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977 201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
+|+........+..+...+..++|+|+|++|++++.+ .. |++||+.+++.. .+.. +. .+.+++|+|||++|+
T Consensus 295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--TF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--SS-SCEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--CC-CcCCeEEcCCCCEEE
Confidence 6777766666677778889999999999999988765 46 999999988874 4544 33 789999999999999
Q ss_pred EEeCCC---eEEEEEceecc
Q 014977 278 VASDKG---TVHIFSLRVRV 294 (415)
Q Consensus 278 s~s~dg---~i~vwd~~~~~ 294 (415)
+++.++ .|++||+..+.
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEETTEEEEEEEETTSCC
T ss_pred EEEcCCCccEEEEEECCCCc
Confidence 888877 79999987443
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.4e-20 Score=171.11 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=165.3
Q ss_pred EEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 50 VSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 50 l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
..|.+++.+ ++++. ++.|.+||.++.+...... .+.... .+.|++++. ++++...+ +.|.+||+.+++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence 356666666 44555 8999999999876655444 334444 899999886 44444445 8999999999987
Q ss_pred -EEEEEccCceeE-EEEcCCeEEEE--e-C-C--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 127 -IGEFAFRSDVRS-VKLSRDRIVVV--L-E-H--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 127 -~~~~~~~~~i~~-l~~~~~~~~~~--~-d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
...+........ ++|+|++.+++ . + + .|.+||+.+++.+..+..+. ....+.++|+++++++++..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTT
T ss_pred eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCc
Confidence 666664444455 99999998777 2 3 3 89999999999888776544 34566777777656555555677
Q ss_pred -EEEEEcCCcc-e----EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE---EEEEecCCCcccEEEEE
Q 014977 199 -VRIEHFGLNM-I----KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIA 268 (415)
Q Consensus 199 -v~i~~~~~~~-~----~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~ 268 (415)
|.+|+..... + ............++|+|+|++|++++ .++. |++||+.+++. +..+.. ...+..++
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~ 227 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIV 227 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEE
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEE
Confidence 9988765321 1 12223455678999999999665554 5777 99999999988 777774 34678899
Q ss_pred eCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977 269 LSPNVQWLAVAS-DKGTVHIFSLRVRVV 295 (415)
Q Consensus 269 ~spdg~~l~s~s-~dg~i~vwd~~~~~~ 295 (415)
|+|||++|+++. .++.|.+||+++++.
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 999999877655 477899999988764
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.1e-19 Score=167.03 Aligned_cols=227 Identities=11% Similarity=0.107 Sum_probs=151.4
Q ss_pred CEEEEE-e-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCE--EEE
Q 014977 57 GCFAAG-T-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRC--IGE 129 (415)
Q Consensus 57 ~~la~g-~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~--~~~ 129 (415)
++++++ . ++.|++|+++..+ ......+ .+...+..+.|++++..++.++.+ ++.|.+|++. +++. +..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~----~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC----CCeEEEEEecCCCCceeeccc
Confidence 344444 5 9999999996322 2222222 445566778899988755554432 2899999987 5553 344
Q ss_pred EEccCceeEEEEcCCeEEEE----eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977 130 FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202 (415)
Q Consensus 130 ~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~ 202 (415)
+.....+..++|+|++..++ .++.|.+||+. ..+.+..+..+. .+..+.+++++.++++++..++.|.+|
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCCCCEEEEE
Confidence 55455889999999998665 37899999994 334444444333 344455666777776655578999998
Q ss_pred EcCC-cceE-----EEec-CccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCC--CcE--EEEEecC----CCcccEEE
Q 014977 203 HFGL-NMIK-----LINA-HDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVD--GTR--LQEVRRG----VDRAEIYS 266 (415)
Q Consensus 203 ~~~~-~~~~-----~~~~-~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~--~~~--~~~~~~~----~~~~~v~~ 266 (415)
+... ..+. .+.. ....+..++|+|+|++|++++ .++. |.+||+.. ++. ...+... .....+..
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 8765 3332 2232 345788899999999776555 7788 99999953 433 3333311 01235778
Q ss_pred EEeCCCCCEEEEE-eCCCeEEEEEcee
Q 014977 267 IALSPNVQWLAVA-SDKGTVHIFSLRV 292 (415)
Q Consensus 267 l~~spdg~~l~s~-s~dg~i~vwd~~~ 292 (415)
++|+|+|++|+++ ..++.|.+|+++.
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 9999999988754 4789999999974
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.2e-19 Score=167.79 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=176.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEe--------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCC
Q 014977 42 VDEIELISVSWNQDYGCFAAGT--------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYP 112 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~--------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~ 112 (415)
.....+..++|+|+++++++++ ++.|.+||.++.+....... ......+.+++++. ++++...+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~---- 110 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVN---- 110 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTT----
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCC----
Confidence 3456788999999999998877 35799999988765544433 22355677888875 55565555
Q ss_pred CCeEEEEECCCCCEEEEEEccC----------ceeEEEEcCCeEEEE--e---CCeEEEEEcCCceeeeEEeccCCCcce
Q 014977 113 PTKVIIWDDHQSRCIGEFAFRS----------DVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLANLRGL 177 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~~~----------~i~~l~~~~~~~~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (415)
+.|.+||..+++.+..+.... .+.++.|+|++..++ . ++.|.+||+.+++.+..+..+......
T Consensus 111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 899999999999988887321 278899999987655 2 688999999999988887644432333
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec----CccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA----HDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTR 251 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~----~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~ 251 (415)
+. +++++..++++ ..++.|.+|+... +....+.. +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus 190 ~~--~s~dg~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~ 265 (353)
T 3vgz_A 190 LA--LDSEGKRLYTT-NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI 265 (353)
T ss_dssp CE--EETTTTEEEEE-CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred EE--ECCCCCEEEEE-cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence 44 45556666664 4688999987655 34444443 45567889999999987777655 77 99999999999
Q ss_pred EEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977 252 LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVV 295 (415)
Q Consensus 252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~ 295 (415)
+..+..+ . ...++|+|+|++|+++. .++.|.+||+.+++.
T Consensus 266 ~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 266 LAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 8888753 2 25699999999766655 689999999987763
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=6e-20 Score=179.75 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=189.3
Q ss_pred CCCceEEEEEeC----CCCEEEEEe--CCcEEEEEccCCceeEEEeccC---------CCeeEEEEeeeCC-eEEEEecC
Q 014977 43 DEIELISVSWNQ----DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---------GGFRIVEMLFRCN-ILALVGAG 106 (415)
Q Consensus 43 h~~~V~~l~~sp----~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~s~~ 106 (415)
+...+..++|+| ||++|++++ ++.|.|||..+.+.+....... ....+..+.++++ ..++++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 455689999999 999999887 8999999998877655543311 1236778888885 46667766
Q ss_pred CCCCCCCCeEEEEECCCCCEEE--EEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCC--cceE
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIG--EFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL--RGLC 178 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~ 178 (415)
.+ +.|.+||+.+.+.+. .+.+...+.++.|+|++++++ .+++|.+||+.+++++..+.....+ ....
T Consensus 300 ~~-----g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 300 ET-----GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp TT-----TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred CC-----CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 66 999999998876544 555777889999999998655 4789999999999999888753221 1233
Q ss_pred EEecCCC-ceEEEEeCCccCeEEEEEcC--------CcceEEEecCccceEEEEeCCCCCEEEEEe-------CCCcEEE
Q 014977 179 CLSHHSS-TSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATAS-------TRGTLIR 242 (415)
Q Consensus 179 ~~~~~~~-~~~l~~~g~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-------~dg~~I~ 242 (415)
.+. +|+ +.++++....+++|.+|+.. .+.++.+..|...+..++++|+|++|++++ .++. |.
T Consensus 375 ~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~ 452 (543)
T 1nir_A 375 NFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VA 452 (543)
T ss_dssp EEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EE
T ss_pred ccC-CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EE
Confidence 342 444 55555533368999998875 467889999998899999999999999987 2668 99
Q ss_pred EEECCCCcEE-EEEec------CCCcccEEEEEeCCCCCEEEEEe-----CCCeEEEEEceecccCC
Q 014977 243 IFNTVDGTRL-QEVRR------GVDRAEIYSIALSPNVQWLAVAS-----DKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 243 vwd~~~~~~~-~~~~~------~~~~~~v~~l~~spdg~~l~s~s-----~dg~i~vwd~~~~~~~~ 297 (415)
|||+.+++.. ..+.. ..+...+..+.|+|+|+.|+++. .|+.|.|||.++++...
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 9999999876 44421 11456899999999999988763 47999999999998764
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.7e-20 Score=172.05 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=176.3
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccC---CCeeEEEEeeeCCeEEEEecCC-----CCCC--CC
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---GGFRIVEMLFRCNILALVGAGD-----NSQY--PP 113 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~-----d~~~--~~ 113 (415)
.+..++|+|+|++++++. ++.|.+||+.+.+......+.. +...+..+.|++++..++.+.. ...+ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998776554 7899999998866554443322 1124456789998855555430 0000 12
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
+.|.+||+.+++.+..+.....+.+++|+|++..++ .++.|++||+.+++.+..+..+..... . .+++++..++++
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~--~~s~dg~~l~~~ 191 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE-T--YAQPDVLAVWNQ 191 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT-T--BCCCBCCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCC-c--eeCCCccEEeee
Confidence 899999999999888888777788999999998666 789999999999988877765431111 2 345555555544
Q ss_pred CCccCe-----------------------EEEEEcCCcceE--EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977 193 GLQRGQ-----------------------VRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 193 g~~dg~-----------------------v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
+..++. |.+|+....... .+..+...+..++|+|+|++|+++ ++. |++||+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~ 268 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLE 268 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECC
Confidence 444443 456666554432 234566678899999999999888 678 9999999
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+++++..
T Consensus 269 ~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 269 KNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 99988887742 35789999999999999999999999999988754
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=4.3e-20 Score=169.85 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=168.2
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-C-CcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCeEEEE-ecCCCCCCCCCeE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-S-CGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDNSQYPPTKV 116 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d-~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~~~~~~i 116 (415)
.|...+.+++|+|+|++|+++. + +.|.+|+++ +........+..+. .+..+.|++++..++ ++..+ +.|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~-----~~i 108 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNA-----GNV 108 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCC-----CeE
Confidence 4667789999999999988888 4 899999998 43332222332223 677888999987554 44444 899
Q ss_pred EEEECC---CCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeee----EEeccCCCcceEEEecCC
Q 014977 117 IIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLH----QIETLANLRGLCCLSHHS 184 (415)
Q Consensus 117 ~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~~ 184 (415)
.+||+. +.+.+..+.....+.+++|+|++..++ .++.|++||+.+ ++... .+..+. ......+.+++
T Consensus 109 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p 187 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHP 187 (343)
T ss_dssp EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECT
T ss_pred EEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECC
Confidence 999984 334455555566799999999987655 479999999987 54432 222221 12455677778
Q ss_pred CceEEEEeCCccCeEEEEEcCC--cc---eEEEecC------ccceEEEEeCCCCCEEEEE-eCCCcEEEEEECC--CC-
Q 014977 185 STSVLACPGLQRGQVRIEHFGL--NM---IKLINAH------DSHIACFTLTLDGLLLATA-STRGTLIRIFNTV--DG- 249 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~i~~~~~--~~---~~~~~~~------~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~--~~- 249 (415)
++.++++++..++.|.+|+... .. ...+... ...+..++|+|+|++|+++ ..++. |.+||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~ 266 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV 266 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCc
Confidence 8887766676889999998753 22 2222211 2356689999999987754 46888 9999998 33
Q ss_pred -cEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977 250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV 292 (415)
Q Consensus 250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~ 292 (415)
+.+..+.. +. .+..++|+|+|++|++++ .++.|.+|+++.
T Consensus 267 ~~~~~~~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 267 LSKEGFQPT--ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEEEEC--SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eEEeeeecC--CC-ccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 34444554 22 388999999999988887 579999997763
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=4e-21 Score=195.31 Aligned_cols=240 Identities=10% Similarity=0.032 Sum_probs=168.9
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCCeEEEEecCCCCCC----CCCeEE
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNSQY----PPTKVI 117 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~~----~~~~i~ 117 (415)
..+.+++|+|||++++++.|+.|++||+++++..... ..+.. .+..+.|+|++..++.+..+... .++.|.
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~--~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLI--EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEE--CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEe--ccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3467889999999887744999999999886654332 23332 37889999999888877553111 237899
Q ss_pred EEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc----------------
Q 014977 118 IWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR---------------- 175 (415)
Q Consensus 118 vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~---------------- 175 (415)
+||+.+++. ..+. +...+..++|+|||+.++ .++.|++||+.+++.......+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 999999876 3333 233488999999998877 78999999998887766554433222
Q ss_pred ceEEEecCCCceEEEEeCCcc---------------------------------CeEEEEEcCCcc-eEEEecC------
Q 014977 176 GLCCLSHHSSTSVLACPGLQR---------------------------------GQVRIEHFGLNM-IKLINAH------ 215 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~d---------------------------------g~v~i~~~~~~~-~~~~~~~------ 215 (415)
....+.++|+++.|+++...+ ..|++|+..... ...+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 125677888888888754221 267778876654 3555544
Q ss_pred ccceEEEEeCCCCCEEEEEeCC----CcEEEEEECCCCcEEEEEecCCCcccE----EEEEeCCCCCEEEE--EeCCC--
Q 014977 216 DSHIACFTLTLDGLLLATASTR----GTLIRIFNTVDGTRLQEVRRGVDRAEI----YSIALSPNVQWLAV--ASDKG-- 283 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~d----g~~I~vwd~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~l~s--~s~dg-- 283 (415)
...+..++|+|||++|++.... .. |++||+.+++....+... +...+ ..++|+|||+.|+. ...++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 5678999999999988776532 45 999999999877665432 22333 37899999998775 45666
Q ss_pred ----eEEEEE
Q 014977 284 ----TVHIFS 289 (415)
Q Consensus 284 ----~i~vwd 289 (415)
.|++||
T Consensus 332 ~~~~~l~~~d 341 (723)
T 1xfd_A 332 GKFYHITVSS 341 (723)
T ss_dssp SCEEEEEEEC
T ss_pred cceeEEEEEe
Confidence 455666
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.2e-19 Score=166.48 Aligned_cols=244 Identities=10% Similarity=0.097 Sum_probs=170.7
Q ss_pred CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC--eEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT--KVI 117 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~--~i~ 117 (415)
+...+ .++|+|+|++++++. ++.|.+||.++.+. ... +..+......+.|++++..+++...+ .+ .|.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~~~i~ 111 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITPDDQFAVTVTGL----NHPFNMQ 111 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECTTSSEEEECCCS----SSSCEEE
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECCCCCEEEEecCC----CCcccEE
Confidence 34556 999999999776665 88999999988664 322 22333333338899998877744432 12 899
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCe-EEEEEcCCceeeeEE--eccCCCcceEEEecCCCceEEE
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK-IYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~-i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+||+.+++.+..+.......+++|+|+++.++ .++. |.+|++.....+... ...........+.+++++.+++
T Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 112 SYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp EEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred EEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEE
Confidence 99999999998888777789999999997444 3467 999998754332111 1001112456677788887776
Q ss_pred EeCCccCeEEEEEcCC-cc---eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcE--EEEEecC--CCc
Q 014977 191 CPGLQRGQVRIEHFGL-NM---IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR--LQEVRRG--VDR 261 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~-~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~--~~~~~~~--~~~ 261 (415)
+++..++.|.+|+... +. +..+. ....+..++|+|+|++|++++. ++. |.+||+.+++. +..+... .+.
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeecccccccccCC
Confidence 6677789999988764 44 45555 3466789999999997776654 666 99999998877 4444432 112
Q ss_pred c---cEEEEEeCCCCCEEEEEeC-CCeEEEEEceeccc
Q 014977 262 A---EIYSIALSPNVQWLAVASD-KGTVHIFSLRVRVV 295 (415)
Q Consensus 262 ~---~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~ 295 (415)
. ....++|+|||++|++++. ++.|.+||+..+..
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 2 2355899999998876655 56999999987664
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=9.8e-21 Score=187.65 Aligned_cols=230 Identities=10% Similarity=0.069 Sum_probs=164.7
Q ss_pred CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCC-eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE-
Q 014977 44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW- 119 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw- 119 (415)
..+|++++|+|||++||.++ ++.++||++++.+. .. +..+. ..+..+.|+|+ .+++++..+. .+....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSK--GAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECST--TSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCC--CCcceEEEE
Confidence 45699999999999999876 99999999865432 22 22444 57888999999 5655444200 01444554
Q ss_pred -EC-CCCCEEEEEEccCceeEEEEcCCeE--EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977 120 -DD-HQSRCIGEFAFRSDVRSVKLSRDRI--VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 120 -d~-~~~~~~~~~~~~~~i~~l~~~~~~~--~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (415)
+. ..+... .+.....+...+|+|++. .++ .++.+.+||+.+++.......+. ..+.++|+|++|++++
T Consensus 95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEE
T ss_pred EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEE
Confidence 44 123332 343333444667777764 444 45666699998887655444332 4555666778888644
Q ss_pred Ccc----CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 194 LQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 194 ~~d----g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
.+ +.|++|+........+..|...+..++|+|||++|+++..++ . |++||+.+++.. .+.. +...+..+
T Consensus 169 -~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~ 243 (582)
T 3o4h_A 169 -FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY 243 (582)
T ss_dssp -EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred -EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence 34 678888887777778888999999999999999999888888 7 999999998877 5554 55556556
Q ss_pred E--------eCCCCCEEEEEeCCCeEEEEEc
Q 014977 268 A--------LSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 268 ~--------~spdg~~l~s~s~dg~i~vwd~ 290 (415)
+ |+|||.++++++.|+++++|++
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 6 9999999999999999999999
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.3e-20 Score=169.30 Aligned_cols=234 Identities=7% Similarity=-0.110 Sum_probs=171.2
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccC-CceeEEEeccCC-CeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP-FKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...|...|.+++|+|+|++|+++.++.|.+|++++ .+.... ...+ ...+.++.|++++..++.+..+.. ....|.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~ 113 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEF-GKSAIY 113 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEE
T ss_pred eccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCC-CcceEE
Confidence 45678899999999999999999999999999987 554322 2233 356677899999887777663200 114555
Q ss_pred EEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (415)
+|+..+++ ...+.....+..++|+|++..++ .++.+++|++ .+++ ...+..+.. .+..+.+++++..+++
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEG--RNDGPDYSPDGRWIYF 189 (297)
T ss_dssp EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSS--CEEEEEECTTSSEEEE
T ss_pred EEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCC--ccccceECCCCCEEEE
Confidence 66656555 34455455689999999998665 5888888886 3333 334444443 4566777778888877
Q ss_pred eCCccCeEEEEEc--CCcceEEEecCccceEEEEeCCCCCEEEEEeCC-----------CcEEEEEECCCCcEEE--EEe
Q 014977 192 PGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATASTR-----------GTLIRIFNTVDGTRLQ--EVR 256 (415)
Q Consensus 192 ~g~~dg~v~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-----------g~~I~vwd~~~~~~~~--~~~ 256 (415)
++..++.+.+|.. .......+..|...+..++|+|+|++|++++.+ +. |++||+.+++... .+.
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~ 268 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF 268 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred EecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence 6666888888765 456677778888889999999999999888765 56 9999998886543 333
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
. +...+..++|+|++++|++++.+.
T Consensus 269 ~--~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 269 G--GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp E--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred C--CCcccccceECCCCCEEEEEEecc
Confidence 4 666889999999999998887654
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.1e-19 Score=168.02 Aligned_cols=240 Identities=13% Similarity=0.145 Sum_probs=162.3
Q ss_pred CCCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCCCeEEE
Q 014977 43 DEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVII 118 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~~~i~v 118 (415)
+...+..++|+|||++++++. ++.|.+|++++........+..+...+..++|++++..++.++ .+ +.|.+
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~v 112 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK-----GTAEV 112 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC-----CEEEE
Confidence 446677899999999444443 4789999997654333222223455567788999987555554 44 89999
Q ss_pred EECCC-CC--EEEEEEcc----------CceeEEEEcCCeEEEE---eCCeEEEEEcC-CceeeeE--EeccCCCcceEE
Q 014977 119 WDDHQ-SR--CIGEFAFR----------SDVRSVKLSRDRIVVV---LEHKIYVYSFV-DLKLLHQ--IETLANLRGLCC 179 (415)
Q Consensus 119 wd~~~-~~--~~~~~~~~----------~~i~~l~~~~~~~~~~---~d~~i~iwd~~-~~~~~~~--~~~~~~~~~~~~ 179 (415)
|++.. +. .+..+.+. ..+.+++|+|++++++ .++.|++|++. +++.... +.... ......
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~ 191 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRH 191 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCce
Confidence 99853 33 23333322 2478899999998555 47899999998 5543322 22211 123455
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCC--cc---eEEEecCc------cceEEEEeCCCCCEEE-EEeCCCcEEEEEECC
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NM---IKLINAHD------SHIACFTLTLDGLLLA-TASTRGTLIRIFNTV 247 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~---~~~~~~~~------~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~ 247 (415)
+.++|+++++++++..++.|.+|+... .. +..+.... ..+..++|+|+|++|+ +...++. |.+||+.
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~ 270 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVT 270 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEEC
Confidence 777778887777677789999987653 22 22333222 3578899999999875 5556788 9999997
Q ss_pred C-C--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-CeEEEEEce
Q 014977 248 D-G--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-GTVHIFSLR 291 (415)
Q Consensus 248 ~-~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~ 291 (415)
. + +.+..+.. +...+..++|+|||++|++++.+ +.|.+|+++
T Consensus 271 ~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3 2 44445554 34467899999999998888765 899999665
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=5.3e-20 Score=165.20 Aligned_cols=215 Identities=10% Similarity=0.007 Sum_probs=162.9
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-CCEEEEEE-c-cCceeEEE
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGEFA-F-RSDVRSVK 140 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~~~~~-~-~~~i~~l~ 140 (415)
++.|++||+.+.+.... ..+...+.++.|+|++..++.+.. +.|.+||+.+ ++...... + ...+.+++
T Consensus 21 ~~~i~~~d~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVV---WQTPELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp CEEEEEEETTTTEEEEE---EEESSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred ceeEEEEeCCCCceeee---ccCCcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceE
Confidence 88999999987654322 245667889999999988888763 8999999999 87766555 3 46789999
Q ss_pred EcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--CCcceEE
Q 014977 141 LSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKL 211 (415)
Q Consensus 141 ~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~~~~~~~ 211 (415)
|+|++..++ . ...|.+|++.+++ ...+..+. ....+.++|++..+++++..++.++||.. .......
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 999998887 2 2455556655544 33343332 25556777788888766778898999774 4456667
Q ss_pred EecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-------
Q 014977 212 INAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK------- 282 (415)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d------- 282 (415)
+..+...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+.. +...+..++|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 777888999999999999887766 5888 9999886 5556666665 56789999999999999988776
Q ss_pred ----CeEEEEEceecc
Q 014977 283 ----GTVHIFSLRVRV 294 (415)
Q Consensus 283 ----g~i~vwd~~~~~ 294 (415)
+.|++||+++++
T Consensus 245 ~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SSEEEEEEEEETTSCS
T ss_pred ccCceEEEEEecCCCC
Confidence 569999998765
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1e-19 Score=166.86 Aligned_cols=260 Identities=11% Similarity=0.053 Sum_probs=181.8
Q ss_pred CEEEEEe-CCcEEEEEccCCceeEEEeccCCCe-eEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR 133 (415)
Q Consensus 57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 133 (415)
++|+++. ++.|.+||..+.+......+ .+.. .+..+.|++++ .++++...+ +.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEcC
Confidence 4677777 99999999988665544433 2211 35678899988 455666655 89999999999998888744
Q ss_pred C------ceeEEEEcCCeEEEE-e--------------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 134 S------DVRSVKLSRDRIVVV-L--------------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 134 ~------~i~~l~~~~~~~~~~-~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
. .+..++|+|++..++ . ++.|.+||+.+++.+..+..... ...+.+++++.+++++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGL 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEE
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---cceeEECCCCCEEEEe
Confidence 3 788999999996655 3 48999999999888877765332 3334455666666664
Q ss_pred CCccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCc-----------------------EEEEEECCC
Q 014977 193 GLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGT-----------------------LIRIFNTVD 248 (415)
Q Consensus 193 g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-----------------------~I~vwd~~~ 248 (415)
++.|.+|+.... ....+..+.. ...+.|+|+|++|+..+..+. .|.+||+.+
T Consensus 153 ---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 ---GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp ---SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred ---CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 578999887654 3444443331 113378999987765554332 168999999
Q ss_pred CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG 328 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (415)
++.. .+....+...+.+++|+|||++|+++ ++.|++||+++++...
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~------------------------------- 274 (337)
T 1pby_B 229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK------------------------------- 274 (337)
T ss_dssp CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE-------------------------------
T ss_pred CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc-------------------------------
Confidence 8875 33322255578899999999999888 7899999998765321
Q ss_pred CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.+..+. ....++|+++ +.+++++.+|.|++|.+..
T Consensus 275 -------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 275 -------------------------RVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp -------------------------EEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred -------------------------eecCCC-ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 222221 2345789998 5688887799999998754
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.1e-19 Score=184.28 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=168.3
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ- 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~- 123 (415)
..|.+++|+|| +.++.+.++.+++||+.+.+.... . .+...+..+.|+|++..++... + +.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l-~--~~~~~~~~~~~SpdG~~la~~~-~-----~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYL-F--DTNEETASLDFSPVGDRVAYVR-N-----HNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEE-E--CCTTCCTTCEECTTSSEEEEEE-T-----TEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEc-c--CCcccccCCcCCCCCCEEEEEE-C-----CeEEEEecCcc
Confidence 57999999999 777777889999999987543222 1 3444566788999998877753 3 8999999988
Q ss_pred ----CCEEEEEEc-cCc--------------eeEEEEcCCeEEEE--e-C------------------------------
Q 014977 124 ----SRCIGEFAF-RSD--------------VRSVKLSRDRIVVV--L-E------------------------------ 151 (415)
Q Consensus 124 ----~~~~~~~~~-~~~--------------i~~l~~~~~~~~~~--~-d------------------------------ 151 (415)
++....... ... +.++.|+|||+.++ . |
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 776654432 222 58999999999887 2 1
Q ss_pred ---CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC-----eEEEEEcCCc-ceEEEe--cCcc---
Q 014977 152 ---HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-----QVRIEHFGLN-MIKLIN--AHDS--- 217 (415)
Q Consensus 152 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-----~v~i~~~~~~-~~~~~~--~~~~--- 217 (415)
..|++||+.+++.............+..+.++|++..|+++. .++ .|++|+.... ....+. .+..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 579999999887654433222223566778888888777643 343 7888887665 444443 2222
Q ss_pred ceEEEEeCC--CCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeCC-C----eEEEE
Q 014977 218 HIACFTLTL--DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDK-G----TVHIF 288 (415)
Q Consensus 218 ~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~d-g----~i~vw 288 (415)
.+..++|+| +|++|++++.++. ++||++. +++.+..+.. +...+.. ++|+|||+.|+.++.+ + .|+.|
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred ccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 246789999 9999999999998 9999876 6777777766 5556776 7999999988765554 3 56666
Q ss_pred Eceecc
Q 014977 289 SLRVRV 294 (415)
Q Consensus 289 d~~~~~ 294 (415)
|+.+++
T Consensus 388 d~~~~~ 393 (706)
T 2z3z_A 388 DIKGGK 393 (706)
T ss_dssp ETTCCC
T ss_pred EcCCCC
Confidence 655543
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=8.3e-20 Score=186.14 Aligned_cols=234 Identities=10% Similarity=0.051 Sum_probs=168.9
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
.|.+++|+|||++|++++++.|.+|++.+.. ... .+..+...+..+.|+|++..++.+.. +.|++||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKGGFVSFIRG------RNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTSSEEEEEET------TEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEE--EcccCCcccccccCCCCCCEEEEEeC------CcEEEEecCC
Confidence 4889999999999999999999999998752 222 23355667889999999998887764 7999999988
Q ss_pred CCEEEEEEc-cCc----------------eeEEEEcCCeEEEE---eCC-------------------------------
Q 014977 124 SRCIGEFAF-RSD----------------VRSVKLSRDRIVVV---LEH------------------------------- 152 (415)
Q Consensus 124 ~~~~~~~~~-~~~----------------i~~l~~~~~~~~~~---~d~------------------------------- 152 (415)
++....... ... +..+.|+|||+.++ .|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 876554432 221 47899999998777 343
Q ss_pred --eEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceEEEEeCC----ccCeEEEEEcCCcceE-EEecCcc----ceE
Q 014977 153 --KIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGL----QRGQVRIEHFGLNMIK-LINAHDS----HIA 220 (415)
Q Consensus 153 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~dg~v~i~~~~~~~~~-~~~~~~~----~i~ 220 (415)
.|++||+.+ ++.............+..+.+ +++..|++.+. .+..|++|+....... .+..+.. .+.
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 889999988 775543322122235566777 77888876432 3567888887654433 3443332 456
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEE-EeCCCCCEEEE-EeCCC--eEEEEEcee
Q 014977 221 CFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAV-ASDKG--TVHIFSLRV 292 (415)
Q Consensus 221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s-~s~dg--~i~vwd~~~ 292 (415)
.++|+|||+++++++.++. ++||.+. +++ ...+.. +...+..+ .|+|||+.|+. ++.++ .++||++..
T Consensus 341 ~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8999999999999999997 7887765 445 666665 55678787 59999998765 44454 899999875
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=2.8e-19 Score=188.88 Aligned_cols=237 Identities=10% Similarity=0.071 Sum_probs=179.6
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.+|...+.++.|+++ .+++++. ++.++||.++........ +..+. .+....|++++..++.+. + +.|.+|
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~-l~~~~-~~~~~~~SpDG~~la~~~-~-----~~i~~~ 270 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFSK-G-----GSIYIF 270 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEEE-T-----TEEEEE
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE-ecCCC-CcceeeEcCCCCEEEEEe-C-----CEEEEe
Confidence 678999999999998 5666666 889999988643222221 21222 234558889988777664 3 899999
Q ss_pred ECCCCCEEEEEEc------------cCceeEEEEc-CCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977 120 DDHQSRCIGEFAF------------RSDVRSVKLS-RDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS 184 (415)
Q Consensus 120 d~~~~~~~~~~~~------------~~~i~~l~~~-~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (415)
++...+. ..+.. ...+.+++|+ |+++.++ .++.|++|++.+++... +..+.. ..+..+.++
T Consensus 271 d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s- 346 (1045)
T 1k32_A 271 NPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR-IRYVRRGGD- 346 (1045)
T ss_dssp CTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC-EEEEEECSS-
T ss_pred cCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc-ceEEeeeEc-
Confidence 9854443 33332 2368999999 9998777 78999999998776443 333322 245677778
Q ss_pred CceEEEEeCCccCeEE-EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc
Q 014977 185 STSVLACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (415)
Q Consensus 185 ~~~~l~~~g~~dg~v~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (415)
++..+++.+ .++.+. +|+........+..|...+..++|+|||++|++++.++. |++||+.+++....+.. |...
T Consensus 347 dg~~l~~~s-~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~~~ 422 (1045)
T 1k32_A 347 TKVAFIHGT-REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--REAM 422 (1045)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SSSC
T ss_pred CCCeEEEEE-CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CCCC
Confidence 888888755 477787 888777766666678889999999999999999999999 99999999998777766 6778
Q ss_pred EEEEEeCCCCCEEEEEeCCC----------eEEEEEceecc
Q 014977 264 IYSIALSPNVQWLAVASDKG----------TVHIFSLRVRV 294 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg----------~i~vwd~~~~~ 294 (415)
+..++|+|||++|++++.++ .|++||+.+++
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 89999999999999887654 89999998765
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=1.4e-19 Score=183.57 Aligned_cols=233 Identities=13% Similarity=0.124 Sum_probs=162.3
Q ss_pred eEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccC--------------CCeeEEEEeeeCCeEEEEecCCCC
Q 014977 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKS--------------GGFRIVEMLFRCNILALVGAGDNS 109 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~l~s~~~d~ 109 (415)
+..+.|. |..++++. ++ | +||+.+++. ........ ....+..+.|+++..++++. +
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~--~- 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFT--Q- 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEE--T-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEE--C-
Confidence 4557788 66666666 66 8 999988665 22221100 01457889999996555553 2
Q ss_pred CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCC-----ceeeeEEeccCCCc-------
Q 014977 110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-----LKLLHQIETLANLR------- 175 (415)
Q Consensus 110 ~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~-----~~~~~~~~~~~~~~------- 175 (415)
+.|++||+.+++......+...+.+++|+|||+.++ .++.|++||+.+ ++.......+...+
T Consensus 101 ----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 101 ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp ----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred ----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 899999999887766666778899999999998887 799999999988 76654433322211
Q ss_pred -----ceEEEecCCCceEEEEeCC--------------------------------ccCeEEEEEcCCcceEEEe---cC
Q 014977 176 -----GLCCLSHHSSTSVLACPGL--------------------------------QRGQVRIEHFGLNMIKLIN---AH 215 (415)
Q Consensus 176 -----~~~~~~~~~~~~~l~~~g~--------------------------------~dg~v~i~~~~~~~~~~~~---~~ 215 (415)
....+.++|+++.|+++.. .+..|++|+........+. .|
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 1245667777888887531 3456778888765544433 46
Q ss_pred ccceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCcEEEEEecCCCcc---cEEEEEeCC--CCCEEEEEeCCCeE
Q 014977 216 DSHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALSP--NVQWLAVASDKGTV 285 (415)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp--dg~~l~s~s~dg~i 285 (415)
...+..++|+|||++|++++.++ . |++||+.+++....+....+.. .+..++|+| ||++|++++.|+.+
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 67899999999999999887765 6 9999999984444443211221 246789999 99999999999999
Q ss_pred EEEEce
Q 014977 286 HIFSLR 291 (415)
Q Consensus 286 ~vwd~~ 291 (415)
+||+++
T Consensus 336 ~l~~~~ 341 (706)
T 2z3z_A 336 HLYLYD 341 (706)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999987
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=4e-19 Score=163.88 Aligned_cols=229 Identities=8% Similarity=-0.018 Sum_probs=163.5
Q ss_pred EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
.+++++++.+++++. ++.|.+||..+.+....... ........+.+++++. ++++...+ +.|.+||+.+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcE
Confidence 346788888899888 99999999988665544433 2211355778899875 45555555 8999999999998
Q ss_pred EEEEEcc-------CceeEEEEcCCeEEEE---e------------CCeEEEEEcCCceee---eEEeccCCCcceEEEe
Q 014977 127 IGEFAFR-------SDVRSVKLSRDRIVVV---L------------EHKIYVYSFVDLKLL---HQIETLANLRGLCCLS 181 (415)
Q Consensus 127 ~~~~~~~-------~~i~~l~~~~~~~~~~---~------------d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~ 181 (415)
+..+... ..+..++|+|+++.++ . ++.|.+||+.+++.. ..+..+. .+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~ 154 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMR 154 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEE
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---ccccee
Confidence 8877742 2378999999998776 2 389999999885443 3333222 344455
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCc--------------------------------------------
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD-------------------------------------------- 216 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~-------------------------------------------- 216 (415)
+++++. +++.+ +.|.+|+... +.+..+..+.
T Consensus 155 ~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 155 AADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp ECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred ECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 666666 43322 3387777643 3333332221
Q ss_pred ------------------------cceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 217 ------------------------SHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 217 ------------------------~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
..+..++|+| +|++|+++ ++. |.+||+.+++.+..+.. ...+.+++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~s~ 304 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANL---DHTYYCVAFDK 304 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEEC---SSCCCEEEECS
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcC---CCCccceEECC
Confidence 1345678889 99999888 778 99999999998888774 23467899999
Q ss_pred CCCEEEEEeCCCeEEEEEceecccC
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|++|++++.++.|++||+++++..
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCCEEEEecCCCeEEEEecccccee
Confidence 9999998888999999999887754
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.2e-17 Score=154.39 Aligned_cols=281 Identities=13% Similarity=0.056 Sum_probs=174.8
Q ss_pred EEEEEe-----CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE--EEE
Q 014977 58 CFAAGT-----SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE 129 (415)
Q Consensus 58 ~la~g~-----d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~ 129 (415)
.+++|+ ++.|.+|.++.. +.........+......+.|+|++.++++...+ .++.|.+|++.+++. +..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence 455553 567888888652 222221111333455668899999855444320 128999999977653 333
Q ss_pred EE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcC-Cc--eeeeEEeccCC-------CcceEEEecCCCceEEEEeCC
Q 014977 130 FA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DL--KLLHQIETLAN-------LRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 130 ~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~-~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~ 194 (415)
+. +...+..++|+|++++++ .++.|.+|++. ++ +.+..+..... ...+..+.++|++. +++++.
T Consensus 81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~ 159 (347)
T 3hfq_A 81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL 159 (347)
T ss_dssp EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC
Confidence 22 677889999999998666 46899999995 33 33333322111 11345566677777 445566
Q ss_pred ccCeEEEEEcC-CcceEE---EecC-ccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCC--CcE--EEEEecCCC----
Q 014977 195 QRGQVRIEHFG-LNMIKL---INAH-DSHIACFTLTLDGLLLATA-STRGTLIRIFNTVD--GTR--LQEVRRGVD---- 260 (415)
Q Consensus 195 ~dg~v~i~~~~-~~~~~~---~~~~-~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~--~~~--~~~~~~~~~---- 260 (415)
.++.|.+|+.. ...+.. +..+ ...+..++|+|||++|+++ ..++. |.+|++.. ++. +..+.....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 78899998876 222222 2222 3367789999999976665 55677 99999874 543 223332111
Q ss_pred cccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977 261 RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (415)
Q Consensus 261 ~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (415)
...+..++|+|||++|+ +...++.|.+|++.......
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------------ 276 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT------------------------------------------ 276 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE------------------------------------------
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE------------------------------------------
Confidence 13588999999999874 55668999999997432110
Q ss_pred cccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeC-CcEEEEEEecCCCCcEEE
Q 014977 340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMD-GSFYRCSFDPVHGGEMLQ 397 (415)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d-g~~~~~~~~~~~~~~~~~ 397 (415)
....+.........++|+++ +.|++++.+ +.+.+|.++...+ +...
T Consensus 277 -----------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg-~l~~ 324 (347)
T 3hfq_A 277 -----------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG-KLSL 324 (347)
T ss_dssp -----------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEE
T ss_pred -----------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC-eEEe
Confidence 01122222223446789999 457777765 8999999987544 4443
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=1.9e-18 Score=182.45 Aligned_cols=238 Identities=12% Similarity=-0.014 Sum_probs=179.0
Q ss_pred CCCceEEEEEe-CCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe-eEEEEeeeCCeEEEEecCCCCCCCCCeEE-EE
Q 014977 43 DEIELISVSWN-QDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNILALVGAGDNSQYPPTKVI-IW 119 (415)
Q Consensus 43 h~~~V~~l~~s-p~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~~~~~~i~-vw 119 (415)
|...+.+++|+ |||++|+++.++.+.+|+....... . +..+.. .+..+.|+ ++..++.++.+ +.+. +|
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~~~~~s-dg~~l~~~s~~-----~~l~~~~ 364 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-K--VPEPLRIRYVRRGGD-TKVAFIHGTRE-----GDFLGIY 364 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-E--CSCCSCEEEEEECSS-SEEEEEEEETT-----EEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-E--ccCCCcceEEeeeEc-CCCeEEEEECC-----CceEEEE
Confidence 44579999999 9999999988999999998865432 2 334554 78899999 99888877665 8898 99
Q ss_pred ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-
Q 014977 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ- 195 (415)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~- 195 (415)
++.+++......+...+..++|+||++.++ .++.|++||+.+++....+..+...+ ..++++|++++|++++..
T Consensus 365 d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v--~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 365 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECTTSCEEEEEEEEC
T ss_pred ECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc--cceEECCCCCeEEEEecCc
Confidence 988877554334668899999999999887 57899999999988877776666544 445556677788775432
Q ss_pred --------cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE----------------
Q 014977 196 --------RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---------------- 251 (415)
Q Consensus 196 --------dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---------------- 251 (415)
++.|++|+........+..|...+..++|+|||++|++++.++. ..+|+......
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred cccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCC
Confidence 25899999887777778888888999999999999999998877 77776433221
Q ss_pred ---------------------------EEEEecCCCcccEEEEEeCCCCCEEEE-------------EeCCCeEEEEEce
Q 014977 252 ---------------------------LQEVRRGVDRAEIYSIALSPNVQWLAV-------------ASDKGTVHIFSLR 291 (415)
Q Consensus 252 ---------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s-------------~s~dg~i~vwd~~ 291 (415)
+..+.. +.+.+..++++|||+++++ ......|++||+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~ 599 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 599 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC
Confidence 111111 4456889999999987775 1224578888887
Q ss_pred ecc
Q 014977 292 VRV 294 (415)
Q Consensus 292 ~~~ 294 (415)
+++
T Consensus 600 ~~~ 602 (1045)
T 1k32_A 600 TRK 602 (1045)
T ss_dssp TCC
T ss_pred CCc
Confidence 765
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=1.8e-17 Score=153.00 Aligned_cols=228 Identities=10% Similarity=0.063 Sum_probs=169.4
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCC-------eeEEEEeeeCCeEEEE-ec-CCCCCCCC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-------FRIVEMLFRCNILALV-GA-GDNSQYPP 113 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~-s~-~~d~~~~~ 113 (415)
..+..++|+|+|++++++. ++.|.+||.++.+........... .....+.+++++..++ +. +.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~----- 163 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE----- 163 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-----
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-----
Confidence 4467899999999776655 799999999887765554442211 2367789999865433 33 344
Q ss_pred CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--CcceEEEecCCCce
Q 014977 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LRGLCCLSHHSSTS 187 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 187 (415)
+.|.+||+.+++.+..+. +...+.++.|+|++..++ .++.|.+||+.+++.+..+..... ......+.+++++.
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 899999999999998888 666789999999987666 578999999999998887765221 22344566666676
Q ss_pred EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
.+++++..++.|.+|+... +.+..+.... ...++|+|+|+++++++ .++. |.+||+.+++.+..+.. ...+.
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~---~~~~~ 317 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDT---PTHPN 317 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---CSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEec---CCCCC
Confidence 6666666678999988754 4455555433 25799999999766555 6788 99999999999888875 33689
Q ss_pred EEEeCCCCCEEEEEeCCC
Q 014977 266 SIALSPNVQWLAVASDKG 283 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg 283 (415)
+++|+|||++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999887776654
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.7e-17 Score=154.18 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=158.7
Q ss_pred CCCceEEEEEeCCCCEEEEEe-C----CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 43 DEIELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
+...+..++|+|||++|++++ + +.|.+|+++.. ..........+......+.+ ....++++...+ +.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~-----~~ 121 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSG-----GS 121 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTT-----TE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCC-----CE
Confidence 566778899999999999888 4 69999999763 22222222234445566666 333344444444 89
Q ss_pred EEEEECCCCCEEE----EEEc-----------cCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee------e-----
Q 014977 116 VIIWDDHQSRCIG----EFAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL------L----- 165 (415)
Q Consensus 116 i~vwd~~~~~~~~----~~~~-----------~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~------~----- 165 (415)
|.+|++.....+. .+.+ ...+.+++|+|++++++ .++.|++|++..... +
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 9999987543322 1222 22357899999998554 378999999865331 1
Q ss_pred -eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEe---cCccceEEEEeCCCCCEEEEEeCC-
Q 014977 166 -HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLIN---AHDSHIACFTLTLDGLLLATASTR- 237 (415)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~---~~~~~i~~l~~sp~g~~l~s~s~d- 237 (415)
...... .......+.++|+++++++++..++.|.+|+.....+ ..+. .+......++|+|||++|+++..+
T Consensus 202 ~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVA-PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECC-TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 112211 1224556777888887777666789999988764333 2222 223456799999999998776655
Q ss_pred -CcEEEEEECC--CCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977 238 -GTLIRIFNTV--DGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV 292 (415)
Q Consensus 238 -g~~I~vwd~~--~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~ 292 (415)
+. |.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|+++.
T Consensus 281 ~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 281 ADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 77 9999985 455 3334432 23578999999999998887 678999987753
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=9.1e-18 Score=156.41 Aligned_cols=242 Identities=11% Similarity=0.084 Sum_probs=163.7
Q ss_pred CCCceEEEEEeCCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCeE--EEEecC-------------
Q 014977 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAG------------- 106 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~------------- 106 (415)
....+..++|+|+|++|++++.+.|.+|+++ +++.........+. ....+.++|++. +++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3346788999999999998883399999997 54432221111111 133477899988 344543
Q ss_pred CCCCCCCCeEEEEECC-CCCEEEEEE-----ccCceeEEEEcCCeEEEE----eCCeEEEEEcC-Cceee--eEEeccCC
Q 014977 107 DNSQYPPTKVIIWDDH-QSRCIGEFA-----FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DLKLL--HQIETLAN 173 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~-~~~~~~~~~-----~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~-~~~~~--~~~~~~~~ 173 (415)
.+ +.+.+|++. +++....+. +...+.+++|+|+|++++ .++.|++|++. +++.. ..+.....
T Consensus 117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 34 899999987 466654443 356799999999998665 25799999998 67643 22332111
Q ss_pred CcceEEEecCCCceEEEEeCCccCeEEEEEcC---Ccce---EEEec-------Ccc------ceEEEE-eCCCCCEEEE
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG---LNMI---KLINA-------HDS------HIACFT-LTLDGLLLAT 233 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~---~~~~---~~~~~-------~~~------~i~~l~-~sp~g~~l~s 233 (415)
......+.++|+++++++++..++.|.+|+.+ ++.. ..+.. |.. .+..++ |+|||++|++
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 22466677788888877766667899997654 2221 12221 121 478999 9999998887
Q ss_pred EeCCC------cEEEEEECC-CCcEEEE---EecCCCcccEEEEEeCC---CCCEEEEEeCC-CeEEEEEceec
Q 014977 234 ASTRG------TLIRIFNTV-DGTRLQE---VRRGVDRAEIYSIALSP---NVQWLAVASDK-GTVHIFSLRVR 293 (415)
Q Consensus 234 ~s~dg------~~I~vwd~~-~~~~~~~---~~~~~~~~~v~~l~~sp---dg~~l~s~s~d-g~i~vwd~~~~ 293 (415)
++.+. . |.+|++. +++.... +.. +...+..++|+| ||++|++++.+ +.|.+|+++..
T Consensus 272 ~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 272 SSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEESSTTSCCE-EEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 66432 7 9999996 6665432 222 333456789999 89999998865 89999999865
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=8.8e-18 Score=170.65 Aligned_cols=240 Identities=8% Similarity=-0.030 Sum_probs=163.3
Q ss_pred ceEEEEEeCCCCEEEEEe-C---------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977 46 ELISVSWNQDYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~ 115 (415)
.|.+++|||||++|+++. + +.+.+||+++.+.........+...+..+.|+|++..++.++. +.
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~ 135 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NN 135 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------Ce
Confidence 499999999999999987 3 6788999987654211111223334677899999988887765 79
Q ss_pred EEEEECCCCCEEEEEE-ccCc------------------eeEEEEcCCeEEEE---eCC---------------------
Q 014977 116 VIIWDDHQSRCIGEFA-FRSD------------------VRSVKLSRDRIVVV---LEH--------------------- 152 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~------------------i~~l~~~~~~~~~~---~d~--------------------- 152 (415)
|++||+.+++...... +... +.++.|+|||+.++ .++
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence 9999999888766554 2332 37899999998877 222
Q ss_pred -------------eEEEEEcCCceeeeEEeccC----CCcceEEEecCCCceEEEEeC---CccCeEEEEEcCCcce-EE
Q 014977 153 -------------KIYVYSFVDLKLLHQIETLA----NLRGLCCLSHHSSTSVLACPG---LQRGQVRIEHFGLNMI-KL 211 (415)
Q Consensus 153 -------------~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~-~~ 211 (415)
.|++||+.+++....+..+. ....+..+.++|+++++++.. ..+..|++|+...... ..
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 79999998887655555431 123456677888888876542 2345677888765443 33
Q ss_pred Eec-CccceE----EEEeCCCCCEEEE--EeCCC------cEEEEEE-CCCCcE--EEEEecCCCcccEEE-EEeCCCCC
Q 014977 212 INA-HDSHIA----CFTLTLDGLLLAT--ASTRG------TLIRIFN-TVDGTR--LQEVRRGVDRAEIYS-IALSPNVQ 274 (415)
Q Consensus 212 ~~~-~~~~i~----~l~~sp~g~~l~s--~s~dg------~~I~vwd-~~~~~~--~~~~~~~~~~~~v~~-l~~spdg~ 274 (415)
+.. +...+. .++|+|||+.|+. +..++ . |++|| ...++. ...+.. ....+.. ++|+|||+
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~ 372 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGN 372 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTT
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCC
Confidence 333 344443 7899999997664 45566 4 77777 344441 444443 2234444 69999999
Q ss_pred EEEEEeCC---CeEEEEEceecc
Q 014977 275 WLAVASDK---GTVHIFSLRVRV 294 (415)
Q Consensus 275 ~l~s~s~d---g~i~vwd~~~~~ 294 (415)
+|+..+.+ +.++||++....
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECSST
T ss_pred EEEEEEcCCCCcceEEEEEeCCC
Confidence 99876655 789999997643
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=7.9e-18 Score=157.81 Aligned_cols=245 Identities=9% Similarity=-0.065 Sum_probs=158.6
Q ss_pred CCCCCCceEE-----EEEeCCCCEEEEEe--CCc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977 40 SDVDEIELIS-----VSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (415)
Q Consensus 40 ~~~h~~~V~~-----l~~sp~g~~la~g~--d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (415)
...|...... .+|+|||++|+.++ ++. |.+|++++.+... ....+...+....|+|++..|+....+
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~spdg~~l~~~~~~-- 101 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--LTEGRGDNTFGGFLSPDDDALFYVKDG-- 101 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE--CCCSSCBCSSSCEECTTSSEEEEEETT--
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE--eeeCCCCCccceEEcCCCCEEEEEeCC--
Confidence 3445544554 78999999999887 453 7777877654322 222333333356799999888877766
Q ss_pred CCCCeEEEEECCCCCEEEEEEc-cCceeEE--EEcCCeEEEE-------------------------eCCeEEEEEcCCc
Q 014977 111 YPPTKVIIWDDHQSRCIGEFAF-RSDVRSV--KLSRDRIVVV-------------------------LEHKIYVYSFVDL 162 (415)
Q Consensus 111 ~~~~~i~vwd~~~~~~~~~~~~-~~~i~~l--~~~~~~~~~~-------------------------~d~~i~iwd~~~~ 162 (415)
+.|++||+.+++....+.. ...+... .+++++..++ .+..|++||+.++
T Consensus 102 ---~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 102 ---RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ---TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred ---CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 8999999999988776663 3334333 3488888776 1267999999988
Q ss_pred eeeeEEeccCCCcceEEEecCC-CceEEEEeCCc-----cCeEEEEEcCCcceEEEecCc--cceEEEEeCCCCCEEEEE
Q 014977 163 KLLHQIETLANLRGLCCLSHHS-STSVLACPGLQ-----RGQVRIEHFGLNMIKLINAHD--SHIACFTLTLDGLLLATA 234 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~-----dg~v~i~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~ 234 (415)
+...... +.. .+..+.++| ++..|++.... ...|.+++..+.....+..+. ..+..++|+|||+.|+..
T Consensus 179 ~~~~l~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 179 ESTVILQ-ENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CEEEEEE-ESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred ceEEeec-CCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence 6554433 333 345666777 77777765432 236677777666666665554 357789999999977654
Q ss_pred eC-C----CcEEEEEECCCCcEEEEEecCCCccc---EEEEEeCCCCCEEEEE---------eCCCeEEEEEceeccc
Q 014977 235 ST-R----GTLIRIFNTVDGTRLQEVRRGVDRAE---IYSIALSPNVQWLAVA---------SDKGTVHIFSLRVRVV 295 (415)
Q Consensus 235 s~-d----g~~I~vwd~~~~~~~~~~~~~~~~~~---v~~l~~spdg~~l~s~---------s~dg~i~vwd~~~~~~ 295 (415)
+. + .. |++||+.+++.........+... ...+.|+|||+.|+.. ..+..|++||+.+++.
T Consensus 256 ~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 256 SYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred ecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 43 2 24 99999999875332221101100 1123699999988854 4466899999988653
No 156
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=3.2e-16 Score=140.60 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=178.0
Q ss_pred CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec----cCCCeeEEEEee-eCCeEEEEecCC-CCCCC
Q 014977 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLF-RCNILALVGAGD-NSQYP 112 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~s~~~-d~~~~ 112 (415)
..++-..+.++++++++.++++.. ++.|.+|+.+. +....... ..+......+++ .+++.++++... +
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~---- 99 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT---- 99 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence 356677899999999999888877 89999999873 33222211 012245677888 467777777642 4
Q ss_pred CCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 113 PTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
+.|.+|| .+++.+..+. ....+.++++++++.+++ .++.|++||. +++.+..+...........+..++++.
T Consensus 100 -~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 100 -HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp -CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred -CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence 8999999 6788777775 345789999999998776 3688999995 456666654322222456777777777
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEecCCCcccE
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVDRAEI 264 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (415)
++++ ...++.|++|+..++.+..+..+ ...+..++++++|+++++...++ . |.+||. +++.+..+..+.....+
T Consensus 177 l~v~-~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 177 IFIS-DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEEE-EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCE
T ss_pred EEEE-ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCCcc
Confidence 6554 55688999999888777766543 35788999999999888887775 8 999995 67777777653333357
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+++++|+|+++++ +.|++|++|++....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 89999999987766 679999999986543
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=181.74 Aligned_cols=241 Identities=11% Similarity=0.005 Sum_probs=159.4
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCCeEEEEecCCCC-CC---CCCeEEEEEC
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNS-QY---PPTKVIIWDD 121 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~-~~---~~~~i~vwd~ 121 (415)
.++|+|||++++++.++.|++|++.+++...... .+.. .+..+.|+||+..++.++... .| .++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6799999976666559999999998866543321 2222 267889999998887765410 00 0289999999
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEe-ccCCCc---------------ceEEEecC
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE-TLANLR---------------GLCCLSHH 183 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~---------------~~~~~~~~ 183 (415)
.+++.+........+..++|+|||+.++ .++.|++||+.+++...... ++...+ ....+.++
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 9887632122346788999999998887 79999999998877654321 111100 11356777
Q ss_pred CCceEEEEeCCccC---------------------------------eEEEEEcCCcceE---E------EecCccceEE
Q 014977 184 SSTSVLACPGLQRG---------------------------------QVRIEHFGLNMIK---L------INAHDSHIAC 221 (415)
Q Consensus 184 ~~~~~l~~~g~~dg---------------------------------~v~i~~~~~~~~~---~------~~~~~~~i~~ 221 (415)
|+++.|++....++ .|++|+....... . +..|...+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 78888887542211 6667877665431 1 2357788999
Q ss_pred EEeCCCCCEEEEEeCC----CcEEEEEE----CCCCcEEEEE----ecCCCcccEE-----EEEeCCCCCEEEE--EeCC
Q 014977 222 FTLTLDGLLLATASTR----GTLIRIFN----TVDGTRLQEV----RRGVDRAEIY-----SIALSPNVQWLAV--ASDK 282 (415)
Q Consensus 222 l~~sp~g~~l~s~s~d----g~~I~vwd----~~~~~~~~~~----~~~~~~~~v~-----~l~~spdg~~l~s--~s~d 282 (415)
++|+||++++++.... .. |.+|| +.+++....+ .. +...+. .+.|+|||+.|+. ...+
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred eEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEeccccc--CCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999998877764322 24 88899 7777654333 23 444555 7899999996654 4455
Q ss_pred C--eEEEEEceecc
Q 014977 283 G--TVHIFSLRVRV 294 (415)
Q Consensus 283 g--~i~vwd~~~~~ 294 (415)
| .|++|++.+++
T Consensus 335 g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 335 GYKHIHYIKDTVEN 348 (719)
T ss_dssp SCEEEEEESSCSTT
T ss_pred CceEEEEEECCCCc
Confidence 5 46666665543
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=2.5e-16 Score=146.21 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=146.5
Q ss_pred CCCEEEEEe-----CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--CC
Q 014977 55 DYGCFAAGT-----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SR 125 (415)
Q Consensus 55 ~g~~la~g~-----d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--~~ 125 (415)
...++++|+ ++.|.+|.++. ++......+ +......+.|+|++..+++++.+. ..++.|.+|++.. ++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCc
Confidence 344566664 56899998864 332222222 344455678999987666655420 0127999998765 43
Q ss_pred E--EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEE---eccCC---------CcceEEEecCCCc
Q 014977 126 C--IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI---ETLAN---------LRGLCCLSHHSST 186 (415)
Q Consensus 126 ~--~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~ 186 (415)
. +.... +......+++ ++..++ .++.|.+|++.....+..+ ..+.. ......+.++|++
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3 22233 4556777888 554444 4789999999654332211 11110 1123556777788
Q ss_pred eEEEEeCCccCeEEEEEcCCcc-------e-------EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE
Q 014977 187 SVLACPGLQRGQVRIEHFGLNM-------I-------KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR 251 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~-------~-------~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~ 251 (415)
+++++++..++.|.+|+..... + .....+...+..++|+|+|++|++++ .++. |.+||+.+++.
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~~ 245 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGML 245 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCce
Confidence 8777667678899998765322 1 11223455678999999999888777 5778 99999987754
Q ss_pred --EEEEecC-CCcccEEEEEeCCCCCEEEEEeCC--CeEEEEEcee
Q 014977 252 --LQEVRRG-VDRAEIYSIALSPNVQWLAVASDK--GTVHIFSLRV 292 (415)
Q Consensus 252 --~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~ 292 (415)
+..+... .+...+..++|+|||++|+++..+ +.|.+|++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 3333321 122356899999999998776654 8999999963
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=2.8e-17 Score=151.43 Aligned_cols=228 Identities=9% Similarity=0.022 Sum_probs=162.3
Q ss_pred EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC--ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee
Q 014977 93 MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH 166 (415)
Q Consensus 93 ~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~ 166 (415)
+.+.+++.++++++.+ +.|.+||+.+++.+..+.... .+..++|+|+++.++ .++.|++||+.+++.+.
T Consensus 5 ~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 4567788888888777 999999999999988888555 788999999987543 47899999999998887
Q ss_pred EEeccCC----CcceEEEecCCCceEEEEeCCc-----------cCeEEEEEcCCc----ceEEEecCccceEEEEeCCC
Q 014977 167 QIETLAN----LRGLCCLSHHSSTSVLACPGLQ-----------RGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD 227 (415)
Q Consensus 167 ~~~~~~~----~~~~~~~~~~~~~~~l~~~g~~-----------dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~ 227 (415)
.+..... ...+..+.++++++++++++.. ++.|.+|+.... .+..+. +...+.+++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence 7764321 1123445566677777764422 388999887642 223333 3446889999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-----------------------------------------------
Q 014977 228 GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD----------------------------------------------- 260 (415)
Q Consensus 228 g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~----------------------------------------------- 260 (415)
|+ +++++ +. |++||+.+++.+..+..+..
T Consensus 159 g~-l~~~~--~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 159 GS-LYVAG--PD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp SC-EEEES--SS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred Cc-EEEcc--Cc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 99 55554 45 99999999988777654210
Q ss_pred -------------------cccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977 261 -------------------RAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD 320 (415)
Q Consensus 261 -------------------~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (415)
...+..++|+| |+++|+++ ++.|.+||+++++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~----------------------- 289 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK----------------------- 289 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-----------------------
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-----------------------
Confidence 01345677889 99999888 8899999998776321
Q ss_pred ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.+..+. ....++|+++ +.|++++.+|.|++|....
T Consensus 290 ---------------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 290 ---------------------------------AANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp ---------------------------------EEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred ---------------------------------EEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 122221 2335789998 6788877789999998753
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=2.8e-16 Score=149.54 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=160.9
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----------eeEE----EeccCCCeeEEEEeeeCCeEEEE----ec
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----------ETFR----RDLKSGGFRIVEMLFRCNILALV----GA 105 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~l~----s~ 105 (415)
...++.+++++++.++++++...++||+..... .... ..+ .+...+.++.|++++..++ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEecc
Confidence 446899999999999999993349998764211 0000 011 2344689999999998888 78
Q ss_pred CCCCCCCCCeEEEEECCCC--------CEE---EEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEe
Q 014977 106 GDNSQYPPTKVIIWDDHQS--------RCI---GEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIE 169 (415)
Q Consensus 106 ~~d~~~~~~~i~vwd~~~~--------~~~---~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~ 169 (415)
+.| +.|++||+.++ +.+ ..+. |...|.+++|+|+ +.+++ .|++|++||++++..+....
T Consensus 115 s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 877 99999997654 222 2233 7899999999997 56555 69999999999887665555
Q ss_pred ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCc-------cceEEEEeCCCCCEEEEEe-CCCc--
Q 014977 170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD-------SHIACFTLTLDGLLLATAS-TRGT-- 239 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~s-~dg~-- 239 (415)
.|.. .+.++++++++.+|++ |+.||.|++|+.++.....+..|. ..+.+++|++++.++++.+ .+|.
T Consensus 190 ~~~~--~v~~v~wspdg~~las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 190 PSTV--AVTSVCWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp CGGG--CEEEEEECTTSSCEEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCCC--ceeEEEEcCCCCEEEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 5555 5666677777888876 668999999998866555555442 3789999999988775533 3321
Q ss_pred ---EEEEEECCCCc-----EEEEEecC-----CCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEc
Q 014977 240 ---LIRIFNTVDGT-----RLQEVRRG-----VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSL 290 (415)
Q Consensus 240 ---~I~vwd~~~~~-----~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~ 290 (415)
.+++|++...+ ....+... ....+-..+.+-++.+++++++. .+.|.|+..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 28899997642 12222211 12222233444466676665544 455777764
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=4.9e-17 Score=154.79 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=124.5
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCce----------eeeEEe---ccCCCcceE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK----------LLHQIE---TLANLRGLC 178 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~----------~~~~~~---~~~~~~~~~ 178 (415)
+.+++|+... . .....++.+++++++.+++ ....+++|+..... .+.... .......+.
T Consensus 23 ~~vri~~~~~-~-----~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPE-E-----LPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCS-S-----CCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCcc-c-----cCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 5677776321 1 1234578889998776666 44458998763210 000000 001122467
Q ss_pred EEecCCCceEEEE---eCCccCeEEEEEcCCc---------c---eEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEE
Q 014977 179 CLSHHSSTSVLAC---PGLQRGQVRIEHFGLN---------M---IKLINAHDSHIACFTLTLD-GLLLATASTRGTLIR 242 (415)
Q Consensus 179 ~~~~~~~~~~l~~---~g~~dg~v~i~~~~~~---------~---~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~ 242 (415)
++++++++.+|++ +|+.|+.|++|+.... . +..+.+|...|.+++|+|+ +.+|++++.||. |+
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~ 175 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IA 175 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EE
Confidence 7788888888885 6889999999986532 1 3445679999999999998 889999999999 99
Q ss_pred EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+||++++..+..... |...|.+++|+|+|++|++|+.||+|++||++
T Consensus 176 iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 176 VLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 999999877666655 77899999999999999999999999999998
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=2.4e-17 Score=167.88 Aligned_cols=244 Identities=12% Similarity=0.085 Sum_probs=163.2
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe-----eEEEEeeeCCeEEEEecCCCCC-C---CCCe
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-----RIVEMLFRCNILALVGAGDNSQ-Y---PPTK 115 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~-~---~~~~ 115 (415)
....+++|+|||++++++ ++.|++|++.+++...... .+.. ....+.|+||+..++.+..+.. + ..+.
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 346689999999999987 9999999999876543322 3221 2234678999987777654300 0 1146
Q ss_pred EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEE-eccCCCc---------------ce
Q 014977 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQI-ETLANLR---------------GL 177 (415)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~---------------~~ 177 (415)
+.+||+.+++......+...+...+|+|||+.++ .++.|++|++.+++..+.. .++...+ ..
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 7799999987654334677899999999999888 7999999999887654321 1211100 11
Q ss_pred EEEecCCCceEEEEeCCcc---------------------------------C--eEEEEEcCC---c---ceEEEec--
Q 014977 178 CCLSHHSSTSVLACPGLQR---------------------------------G--QVRIEHFGL---N---MIKLINA-- 214 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~d---------------------------------g--~v~i~~~~~---~---~~~~~~~-- 214 (415)
..+.|+|+++.||+....+ . .|++|+... . ....+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 2356777888888743111 1 456677766 4 4445543
Q ss_pred ----CccceEEEEeCCCCCEEEEEeC----CCcEEEEEECCCCc----EE--EEE--ecCCCcccEE-----EEEeCCCC
Q 014977 215 ----HDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDGT----RL--QEV--RRGVDRAEIY-----SIALSPNV 273 (415)
Q Consensus 215 ----~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~~----~~--~~~--~~~~~~~~v~-----~l~~spdg 273 (415)
|...+..++|+|||++++.... +.. |++||+.+++ +. ..+ .. +...|. .+.|+|||
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~--~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMS--TTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEEC--SSSCSSSSSCCCCEECTTS
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeecc--CCceEccCcCCCceEcCCC
Confidence 7778999999999997665433 235 9999999887 21 122 22 333333 68899999
Q ss_pred CEEE-EEeC-CC--eEEEEEceecc
Q 014977 274 QWLA-VASD-KG--TVHIFSLRVRV 294 (415)
Q Consensus 274 ~~l~-s~s~-dg--~i~vwd~~~~~ 294 (415)
+.|+ ..+. +| .|++|++..++
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CEEEEEEEcCCCceEEEEEECCCCc
Confidence 9887 6654 33 68888887655
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=2.4e-15 Score=140.01 Aligned_cols=227 Identities=11% Similarity=0.072 Sum_probs=147.5
Q ss_pred EEEEEe---CCcEEEEEccC--CceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 014977 58 CFAAGT---SCGFRIYNCEP--FKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEF 130 (415)
Q Consensus 58 ~la~g~---d~~v~iw~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-~~~~~~~~ 130 (415)
+|++|+ ++.|.+|+++. +......... .+...+..+.+++++..+++++. +.|.+|++. +++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEee
Confidence 455666 25788887753 2222111111 22335667889999987776655 489999987 77765544
Q ss_pred Ecc--CceeEEEEcCCeEE--EE----------------eCCeEEEEEcC-CceeeeEEec--cCCCcceEEEecCCCce
Q 014977 131 AFR--SDVRSVKLSRDRIV--VV----------------LEHKIYVYSFV-DLKLLHQIET--LANLRGLCCLSHHSSTS 187 (415)
Q Consensus 131 ~~~--~~i~~l~~~~~~~~--~~----------------~d~~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 187 (415)
.+. +.+..++|+|+++. ++ .++.+.+|++. +++....+.. +........+.++|+++
T Consensus 78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 432 44667899999984 32 26789999996 4665444432 11222456677777887
Q ss_pred EEEEeCCccCeEEEEEcC-Ccce---EEEe--cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECC--CCcEE---EEE
Q 014977 188 VLACPGLQRGQVRIEHFG-LNMI---KLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTV--DGTRL---QEV 255 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~-~~~~---~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~--~~~~~---~~~ 255 (415)
+++++...++.|++|+.. .... ..+. .|...+..++|+|+|++|++++. ++. |.+|++. +++.. ..+
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceE
Confidence 777655456789998875 3222 2233 23567899999999999888775 567 9999865 56643 223
Q ss_pred ecCC-----Ccc------cEEEEE-eCCCCCEEEEEeCC-C-----eEEEEEce
Q 014977 256 RRGV-----DRA------EIYSIA-LSPNVQWLAVASDK-G-----TVHIFSLR 291 (415)
Q Consensus 256 ~~~~-----~~~------~v~~l~-~spdg~~l~s~s~d-g-----~i~vwd~~ 291 (415)
.... +.. .+..++ |+|||++|+++..+ + +|.+|+++
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 2210 111 488999 99999998876543 2 89999997
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=3e-16 Score=147.16 Aligned_cols=234 Identities=9% Similarity=-0.077 Sum_probs=151.3
Q ss_pred CCceEEEEEeCCCCEEEEEe--CC--cEEEEEccCCceeEEEeccCCCeeEE-EEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFRIV-EMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
...+..++|+|||++|+... ++ .|.+|++++.+. .. +..+..... .+.|+|++..|+....+ +.|.+
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~~--l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~ 106 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-VQ--LTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMK 106 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-EE--CCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEE
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-EE--eecCCCCccccceECCCCCEEEEEEcC-----CcEEE
Confidence 34477889999999988776 23 577778876543 22 212222222 26689999888777665 78999
Q ss_pred EECCCCCEEEEEE-ccCceeE-------------------EEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977 119 WDDHQSRCIGEFA-FRSDVRS-------------------VKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET 170 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~-------------------l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~ 170 (415)
||+.+++...... +...... +.++|++..++ .+..|++||+.+++......
T Consensus 107 ~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~- 185 (396)
T 3c5m_A 107 VDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ- 185 (396)
T ss_dssp EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-
T ss_pred EECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-
Confidence 9999888766555 2222222 23456665543 23579999998877654443
Q ss_pred cCCCcceEEEecCC-CceEEEEeCCcc-----CeEEEEEcCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCC-----
Q 014977 171 LANLRGLCCLSHHS-STSVLACPGLQR-----GQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTR----- 237 (415)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~l~~~g~~d-----g~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~d----- 237 (415)
+.. .+..+.++| ++..|++..... ..|.+++..+.....+..+ ...+..++|+|+|++|+.++.+
T Consensus 186 ~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 186 DTA--WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp ESS--CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CCc--ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 333 344555566 566555543211 3577777766555554443 2357889999999987776544
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CCCEEEEEe----------------CCCeEEEEEceecc
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWLAVAS----------------DKGTVHIFSLRVRV 294 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s----------------~dg~i~vwd~~~~~ 294 (415)
+. |++||+.+++....... . ... +.|+| ||++|++++ .+..|++||+.+++
T Consensus 264 ~~-l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 264 RV-IYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EE-EEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred ce-EEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 45 99999988876543322 1 123 88999 999888765 34689999988765
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=5.9e-15 Score=135.27 Aligned_cols=242 Identities=11% Similarity=0.017 Sum_probs=173.6
Q ss_pred CCCceEEEEEeCCCCEEEEEe-C------------------------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-S------------------------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC 97 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (415)
.-+.+.+++++|+|+++++.. + +.|.+||.++++.... .-..+-.....+++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEECT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEECC
Confidence 356799999999999998887 5 3689999877554322 1113334677888999
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCC-EEEEEE----------ccCceeEEEEcC-CeEEEE-e---CCeEEEEEcCC
Q 014977 98 NILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----------FRSDVRSVKLSR-DRIVVV-L---EHKIYVYSFVD 161 (415)
Q Consensus 98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~-~~~~~~----------~~~~i~~l~~~~-~~~~~~-~---d~~i~iwd~~~ 161 (415)
++.++++...+ +.|++||..... .+..+. +-.....++++| ++.+++ . ++.|++|+ .+
T Consensus 101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence 99888887766 899999965442 455552 123688999999 777776 2 57899999 56
Q ss_pred ceeeeEEeccCCC--------cceEEEecCCC-ceEEEEeCCccCeEEEEEcC-CcceEEEe--cCccceEEEEeCCCCC
Q 014977 162 LKLLHQIETLANL--------RGLCCLSHHSS-TSVLACPGLQRGQVRIEHFG-LNMIKLIN--AHDSHIACFTLTLDGL 229 (415)
Q Consensus 162 ~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~l~~~g~~dg~v~i~~~~-~~~~~~~~--~~~~~i~~l~~sp~g~ 229 (415)
++.+..+...... .....++.+++ +.+++ +...++.|++|+.. ++.+..+. .+...+..++|+| +.
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF 252 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence 7777666432211 12456666666 55544 46678899999887 77777764 4566788999999 43
Q ss_pred EEEEE-------eCCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 230 LLATA-------STRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 230 ~l~s~-------s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+++. ..+.. |++||+.+++.+..+.. ..+...+.+|+++|+|.++++...++.|++|++....
T Consensus 253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 33333 33457 99999999999888742 1144578999999999888888889999999998654
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=3.8e-16 Score=154.68 Aligned_cols=230 Identities=9% Similarity=0.055 Sum_probs=164.8
Q ss_pred CCCCC-CceEEEEEeCCCCEEEEEe----CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 40 SDVDE-IELISVSWNQDYGCFAAGT----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 40 ~~~h~-~~V~~l~~sp~g~~la~g~----d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
...|. ..+..++|+|| ++++++. +...+||.++. .+..... .......+.++.++++..+++++..
T Consensus 59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~s~dg~~~~~~s~~~----- 131 (582)
T 3o4h_A 59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPMRILSGVDTGEAVVFTGATE----- 131 (582)
T ss_dssp CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-TTSCSBEEEEEEECSSCEEEEEECS-----
T ss_pred eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc-cCCCCceeeeeCCCCCeEEEEecCC-----
Confidence 34444 68999999999 6666655 34567776654 3332322 2233444556666666678887766
Q ss_pred CCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977 113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
+.+.+||+.+++......+.. .+++|+|||+.++ .+ ..|++||+.+++.. .+..+.. ......++|+
T Consensus 132 -~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpD 205 (582)
T 3o4h_A 132 -DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG--SFSSASISPG 205 (582)
T ss_dssp -SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC--EEEEEEECTT
T ss_pred -CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC--ccccceECCC
Confidence 445599999887766555544 8899999999888 34 67999999887755 4555544 4567778888
Q ss_pred ceEEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEE--------eCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 186 TSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFT--------LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 186 ~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~--------~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
++.|+. +..++ .|++|+..+.....+..|...+..++ |+|||.++++++.++. +++|++ |+.+.
T Consensus 206 G~~l~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~-- 279 (582)
T 3o4h_A 206 MKVTAG-LETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVE-- 279 (582)
T ss_dssp SCEEEE-EECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEEC--
T ss_pred CCEEEE-ccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeec--
Confidence 888884 55677 78888887665556667777777777 9999999999999999 999999 66543
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCe---EEEEEcee
Q 014977 256 RRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLRV 292 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~---i~vwd~~~ 292 (415)
. ..+.+.+++|+ +++++++++.+.+ +++|++..
T Consensus 280 -~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 -A--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -C--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -c--CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 2 34578999999 9999998887753 66666543
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=1.6e-15 Score=142.02 Aligned_cols=248 Identities=10% Similarity=0.039 Sum_probs=158.1
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC----------
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS---------- 109 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---------- 109 (415)
.++...+..+.|+|||+.|+.+. ++.+++||+++.+.......+........+.+++++..++....+.
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 34445555778999999999998 8899999999876554444323222223344578877666311000
Q ss_pred -------CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--e-------CCeEEEEEcCCceeeeEEeccC
Q 014977 110 -------QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--L-------EHKIYVYSFVDLKLLHQIETLA 172 (415)
Q Consensus 110 -------~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~-------d~~i~iwd~~~~~~~~~~~~~~ 172 (415)
.-.+..|.+||+.+++......+...+..+.|+| |+..++ . ...|.++|+..++. ..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~ 235 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA 235 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence 0012789999999998776666778899999999 998877 2 23788888765443 3333332
Q ss_pred CCcceEEEecCCCceEEEEeCCccC----eEEEEEcCCcceEEEecCccc------eEEEEeCCCCCEEEEE--------
Q 014977 173 NLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLNMIKLINAHDSH------IACFTLTLDGLLLATA-------- 234 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~~~~~~~~~~~~~------i~~l~~sp~g~~l~s~-------- 234 (415)
....+....++|+++.|++.+..++ .|++|+........+...... ...++|+|||+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 2123455667778876765443322 388888776554444322210 1223689999987754
Q ss_pred -eCCCcEEEEEECCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEeC-CCeEEEEEceec
Q 014977 235 -STRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVASD-KGTVHIFSLRVR 293 (415)
Q Consensus 235 -s~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~ 293 (415)
..+.. |++||+.+++.. .+.. +.. .+..++|+|||++|+..+. +|...||.++-.
T Consensus 316 ~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 316 IENDPF-LYVFNMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp -CCCCE-EEEEETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cCCCCE-EEEEeccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 44556 999999887654 4444 333 4678899999998887664 666666665543
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=2.9e-14 Score=131.39 Aligned_cols=222 Identities=9% Similarity=0.002 Sum_probs=145.3
Q ss_pred CCceEEEEEeCCCCEEEEEe----------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 44 EIELISVSWNQDYGCFAAGT----------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
-..+..+++ ||++++... ++.|.+|++++.+... + ..+..+.|+|++..++....+..-..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 356788888 899888642 4568888888754321 2 34667889999876665543200001
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-C---------------------------CeEEEEEcCCce
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-E---------------------------HKIYVYSFVDLK 163 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-d---------------------------~~i~iwd~~~~~ 163 (415)
..|.+|++.+++......... +..+.|+||++.++ . + ..|++||+.+++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 358888988887766665555 99999999998776 2 2 579999998887
Q ss_pred eeeEEeccCCCcceEEEecCCCceEEEEeCCcc------C-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQR------G-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d------g-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
.+..+.. . .+..+.++|++ ++++ +..+ . ...||..+......+..+ ..+..+ +|+|++|+.++.
T Consensus 164 ~~~~l~~-~---~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 164 VIEEFEK-P---RFSSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEEEEEE-E---TTCEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred EEeeecC-C---CcccccCCCCe-EEEE-EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEc
Confidence 7455544 2 33445555677 5444 3222 1 334433224344555544 555544 999998887764
Q ss_pred C--------CcEEEEEECCCCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 237 R--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 237 d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+ .. |.+|| +++....... +...+.. +.|+ |+ ++++++.++.++|| +.+
T Consensus 235 ~~~~~~~~~~~-l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 235 PEKKYMSEHNK-LYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSSSCCCSSCE-EEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred cccCCccccce-EEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 4 35 88888 5654433332 4567876 9999 88 88999999999999 883
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.1e-13 Score=123.81 Aligned_cols=235 Identities=13% Similarity=0.140 Sum_probs=169.5
Q ss_pred CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-------cCceeEEEE-cCCeEEEE-e---CCeE
Q 014977 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-------RSDVRSVKL-SRDRIVVV-L---EHKI 154 (415)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------~~~i~~l~~-~~~~~~~~-~---d~~i 154 (415)
-.....+++++++.++++...+ +.|.+||.. ++.+..+.. ...+..+++ .+++.+++ . ++.|
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred cCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 3457788889988888776655 899999976 777666642 246889999 57777766 3 7899
Q ss_pred EEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEE
Q 014977 155 YVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLA 232 (415)
Q Consensus 155 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~ 232 (415)
++|| .+++.+..+.... ......+..++++.++++ ...++.|.+|+..++.+..+. .+...+..++++++|++++
T Consensus 103 ~~~d-~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEEC-TTSCEEEEECTTT-CSCEEEEEECTTSCEEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEEC-CCCcEEEEecCcc-CCCceEEEEeCCCCEEEE-ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 9999 6677766664321 124566777777776654 456788999988877766664 3445689999999999888
Q ss_pred EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecccCCCCCCCCCCCCcccc
Q 014977 233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRVVGEDSSSSLSTPSQSTE 311 (415)
Q Consensus 233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 311 (415)
+...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+|+.. ++..
T Consensus 180 ~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~--------------- 241 (286)
T 1q7f_A 180 SDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI--------------- 241 (286)
T ss_dssp EEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---------------
T ss_pred EECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE---------------
Confidence 8777888 999997 667776765421235689999999999888887776 99999853 2211
Q ss_pred cccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC--CCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977 312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP--EVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~ 389 (415)
..+..+ ......+++.+++++++++.++.|++|.+..
T Consensus 242 -----------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 -----------------------------------------SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp -----------------------------------------EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred -----------------------------------------EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 111111 1224467888998899988899999998754
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=2.6e-14 Score=131.02 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=159.1
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
..|.+++|++++..++... ++.++.|.- +... .+..+......+.|++++.+++++..+ +.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWL--EISKKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEE--EEESSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCccccc---ceeE--EEeccCccccCcEECCCCCEEEEECCC-----CEEEEEeCCC
Confidence 3477788899887776655 888889832 2222 222455566788899999887776665 8999999988
Q ss_pred CCEEEEEE-ccCceeEEEEcCCeEEEE--e-C----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 124 SRCIGEFA-FRSDVRSVKLSRDRIVVV--L-E----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
++...... +...+.++++++++.+++ . + +.|.+||..+++....+........+..+..++++.++++....
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 88765553 567899999999998776 2 2 48999998876654333322222345667777788776653211
Q ss_pred -----cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCC-CcEEEEE-----ecCCCccc
Q 014977 196 -----RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVD-GTRLQEV-----RRGVDRAE 263 (415)
Q Consensus 196 -----dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~-~~~~~~~-----~~~~~~~~ 263 (415)
.+.|..++.....+..+..+...+..++|+|+|+.|+.+ +.++. |.+||+.+ +..+..+ ........
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCCCC
Confidence 244555555544444444444567899999999866544 55777 99999864 4333221 11001136
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+..++++++|+++++...++.|.+||.+
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 7889999999988888788899999873
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=6.2e-15 Score=148.16 Aligned_cols=240 Identities=10% Similarity=-0.045 Sum_probs=159.6
Q ss_pred cCCCCCCceEEEEEeCCCCEEEEE--e-CCcEEEEEccCCceeEEEeccCCCeeEE---------EEeee--CCeEE-EE
Q 014977 39 FSDVDEIELISVSWNQDYGCFAAG--T-SCGFRIYNCEPFKETFRRDLKSGGFRIV---------EMLFR--CNILA-LV 103 (415)
Q Consensus 39 ~~~~h~~~V~~l~~sp~g~~la~g--~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~-l~ 103 (415)
...+|...|..++|++++-+++.. . ++...||.....+.... +..+...+. .+.|+ ||+.. ++
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--eCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 345688899999999987777777 4 77899999754343332 323333333 34444 87765 55
Q ss_pred ecCCCCCCCCCeEEEEECC--C-CCEEEEEE-----ccCceeEEEEcCCeEEEE---eC----------CeEEEEEcCC-
Q 014977 104 GAGDNSQYPPTKVIIWDDH--Q-SRCIGEFA-----FRSDVRSVKLSRDRIVVV---LE----------HKIYVYSFVD- 161 (415)
Q Consensus 104 s~~~d~~~~~~~i~vwd~~--~-~~~~~~~~-----~~~~i~~l~~~~~~~~~~---~d----------~~i~iwd~~~- 161 (415)
..... +..|.++++. . ++...... +...+..++|+|||+.++ .+ ..|++||+.+
T Consensus 96 ~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 96 FTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44331 2778888876 3 44332222 345788999999998877 33 4899999987
Q ss_pred -----ceeeeEEe-ccCCCcceEEEecCCCceEEEEeCCcc-------CeEEEEEcCC-c---ceEEE-ecCccceEEEE
Q 014977 162 -----LKLLHQIE-TLANLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGL-N---MIKLI-NAHDSHIACFT 223 (415)
Q Consensus 162 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d-------g~v~i~~~~~-~---~~~~~-~~~~~~i~~l~ 223 (415)
++.. .+. .+.. ....+.++|+++.|++++... ..|++|+... . ....+ ..|...+..++
T Consensus 172 ~~~~~~~~~-~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 172 AAADRSAVR-ELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp TTTCGGGSE-ESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred ccccCCcee-EEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 5443 333 3222 445566777888887754222 4788888762 3 33444 44578899999
Q ss_pred eCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCccc--------EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 224 LTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAE--------IYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 224 ~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~--------v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
|+|||+++++++.++ . |.+||+.+++....... +... +..++|+|+++++++++. +.++||.++
T Consensus 249 ~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp ECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred ECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 999999888888887 5 77777767765433332 2111 567899999999999998 999999655
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=3e-13 Score=121.78 Aligned_cols=233 Identities=8% Similarity=-0.062 Sum_probs=162.8
Q ss_pred CCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 40 SDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 40 ~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...+.....+++|+|+|+ +++++. ++.|..|+.++. ... +......+..+.+++++.++++...+ +.|.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~l~~~~dg~l~v~~~~~-----~~i~ 93 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP--EMHPSHHQNGHCLNKQGHLIACSHGL-----RRLE 93 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE--EESSCSSEEEEEECTTCCEEEEETTT-----TEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE--EECCCCCcceeeECCCCcEEEEecCC-----CeEE
Confidence 344566788999999998 677777 899999998875 222 22445567889999999888877655 8999
Q ss_pred EEECCCCCEEEEEEc-----cCceeEEEEcCCeEEEEe--------------------CCeEEEEEcCCceeeeEEeccC
Q 014977 118 IWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVL--------------------EHKIYVYSFVDLKLLHQIETLA 172 (415)
Q Consensus 118 vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~ 172 (415)
+||..+++....... ...+.+++++|+|.+++. .+.|+.++.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999888876544331 235678999999988873 2356666654 443 3333332
Q ss_pred CCcceEEEecCCCceEEEEeCCccCeEEEEEcC--Ccc---eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
. ....+.+++++..+ ++...++.|.+|+.. +.. ...+..+...+..++++++|+++++. ++. |.+||..
T Consensus 172 ~--~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~ 245 (296)
T 3e5z_A 172 V--KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD 245 (296)
T ss_dssp S--SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT
T ss_pred C--CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC
Confidence 2 34556677777777 556678899998764 222 22333345567789999999976665 777 9999975
Q ss_pred CCcEEEEEecCCCcccEEEEEe-CCCCCEEEEEeCCCeEEEEEceecc
Q 014977 248 DGTRLQEVRRGVDRAEIYSIAL-SPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
++.+..+.. +.. +.+++| +|+++.|++++.++ +.-++.++++
T Consensus 246 -g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 246 -GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp -SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred -CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 888878876 444 889999 68999999888764 4445554443
No 173
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=155.58 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=135.0
Q ss_pred EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC----ceeEEEEcCCeEEEE---e---------CCeEE
Q 014977 92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS----DVRSVKLSRDRIVVV---L---------EHKIY 155 (415)
Q Consensus 92 ~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~----~i~~l~~~~~~~~~~---~---------d~~i~ 155 (415)
.+.|++++.+++++. + +.|++||+.+++....+.+.. .+.+++|+|||+.++ . ++.|+
T Consensus 20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 567899997776654 5 999999999999887776432 489999999999887 2 48999
Q ss_pred EEEcCCceee--eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccce------------
Q 014977 156 VYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI------------ 219 (415)
Q Consensus 156 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i------------ 219 (415)
+||+.+++.+ ..+. . .+..+.++|+|+.|+++ .++.|++|+........+. ++...+
T Consensus 94 ~~d~~~g~~~~~~~l~---~--~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 94 IYDLSNGEFVRGNELP---R--PIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp EEETTTTEECCSSCCC---S--SBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred EEECCCCccccceecC---c--ccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 9999988763 2221 2 23445666677788875 4789999987654443332 222212
Q ss_pred -----EEEEeCCCCCEEEEEeCCC----------------------------------cEEEEEECCCCcEE--EEEec-
Q 014977 220 -----ACFTLTLDGLLLATASTRG----------------------------------TLIRIFNTVDGTRL--QEVRR- 257 (415)
Q Consensus 220 -----~~l~~sp~g~~l~s~s~dg----------------------------------~~I~vwd~~~~~~~--~~~~~- 257 (415)
.+++|+|||++|++++.|. . |++||+.+++.. ..+..
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence 4899999999999987652 5 889999887642 12211
Q ss_pred ---CCCcccEEEEEeCCCCCEEEEEeCC----CeEEEEE----ceecccC
Q 014977 258 ---GVDRAEIYSIALSPNVQWLAVASDK----GTVHIFS----LRVRVVG 296 (415)
Q Consensus 258 ---~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd----~~~~~~~ 296 (415)
..+...+..++|+||++++++.... ..|.+|| +.+++..
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 0156689999999998877774432 2488888 6666543
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=1.4e-13 Score=126.01 Aligned_cols=206 Identities=9% Similarity=0.084 Sum_probs=145.0
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCC-------------------CCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeE
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQY-------------------PPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRI 146 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~-------------------~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~ 146 (415)
..+..+++++++.++++...+... .++.|.+||..+++.+..+. +-.....+++++++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 347778888988887776654110 12479999999999877665 335788999999998
Q ss_pred EEE---eCCeEEEEEcCCce-eeeEEec-------cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCCcceEEEec
Q 014977 147 VVV---LEHKIYVYSFVDLK-LLHQIET-------LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINA 214 (415)
Q Consensus 147 ~~~---~d~~i~iwd~~~~~-~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~ 214 (415)
+++ .++.|++||..... .+..+.. .........+++++ ++.++++.+..++.|++|+.++..+..+..
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~ 183 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGE 183 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEecc
Confidence 776 46899999975432 4444421 11122456677777 566665532258899999888877776643
Q ss_pred C----------ccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-----
Q 014977 215 H----------DSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV----- 278 (415)
Q Consensus 215 ~----------~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s----- 278 (415)
. -.....|+++|+ |.++++...++. |++||..+++.+..+....+...+..++|+| +..+++
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 2 234789999998 777777777888 9999998899998886544566788999999 433333
Q ss_pred --EeCCCeEEEEEceeccc
Q 014977 279 --ASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 279 --~s~dg~i~vwd~~~~~~ 295 (415)
...+..|++|++.+++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp TTCSCCCCEEEEETTTCCE
T ss_pred eccCCCcEEEEEEcCCCeE
Confidence 33445899999887763
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=9.4e-12 Score=111.62 Aligned_cols=234 Identities=10% Similarity=-0.019 Sum_probs=162.2
Q ss_pred CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
.+...+.++++.++|.++++.. ++.|.+|+.+ .. .....+......+..+.+++++.++++...+ +.|..||
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~ 84 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRIT 84 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEEC
Confidence 3456799999999999888776 7889999987 33 2332332345667888899988877776654 8899999
Q ss_pred CCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 121 DHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 121 ~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
.. ++. ..+. ....+.++++.+++.+.+ .++.|.+||. +++... +...........+..++++.++++ ..
T Consensus 85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~ 159 (299)
T 2z2n_A 85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFT-EN 159 (299)
T ss_dssp TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEE-ET
T ss_pred CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEE-eC
Confidence 75 443 3333 345788999999887776 3678999998 554432 222222234566777777766654 44
Q ss_pred ccCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 195 QRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 195 ~dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
.++.|..++.+++.... +......+..++++++|+++++...++. |.+||. +++.. .+........+.+++++++|
T Consensus 160 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 160 QNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECSTT
T ss_pred CCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECCCC
Confidence 56778877764433322 2234456889999999997777666788 999998 77644 34322234578999999999
Q ss_pred CEEEEEeCCCeEEEEEc
Q 014977 274 QWLAVASDKGTVHIFSL 290 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~ 290 (415)
+++++...++.|.+||.
T Consensus 237 ~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CEEEEETTTTEEEEEET
T ss_pred CEEEeccCCceEEEECC
Confidence 97766657788999997
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=4e-13 Score=119.66 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=145.6
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR 175 (415)
Q Consensus 99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 175 (415)
+.++++++.+ +.|.+||.++|+.+.++... ..+.++.+.|+|++++ .++.|+.||. +++.+..+..+.. .
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~-~ 77 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG-C 77 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT-C
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC-c
Confidence 4566677766 99999999999999999843 4789999999999888 7888999998 8999988876421 2
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
.+....+.+++.++++.+..++.|..++.+++.+..+.. +......+++.++|++|++...++. |.+||.. |
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-C
Confidence 445666777888887643226667667778877766652 2234556778999999999999999 9999987 9
Q ss_pred cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+.+.++... ..+.++.+.++|++++++..++.|..+|.++++.
T Consensus 156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 999998863 3456678889999999998888999999888774
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=7.8e-14 Score=141.32 Aligned_cols=246 Identities=11% Similarity=0.015 Sum_probs=165.4
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ---- 110 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---- 110 (415)
.+|...+..++|||||++||.+. .| .|++||+++++.... .+ ....+..+.|+||+..|+.+..+..
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE--EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc--cCcccceEEEEeCCCEEEEEEECCccccc
Confidence 34555789999999999999776 33 799999988654332 22 1122456889999876665554411
Q ss_pred -------CCCCeEEEEECCCCCE--EEEEE---ccCceeEEEEcCCeEEEE---e-----CCeEEEEEcCC------ce-
Q 014977 111 -------YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---L-----EHKIYVYSFVD------LK- 163 (415)
Q Consensus 111 -------~~~~~i~vwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~~~---~-----d~~i~iwd~~~------~~- 163 (415)
.....|++|++.+++. ...+. +...+..+.|+||+++++ . +..|++||+.+ ++
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 1124599999988762 22223 344578999999999877 2 56899999976 43
Q ss_pred eeeEEeccCCCcceEEEecCCCceEEEEeCCcc---CeEEEEEcCCc---ceEEEecCcc--ceEEEEeCCCCCEEEEEe
Q 014977 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLN---MIKLINAHDS--HIACFTLTLDGLLLATAS 235 (415)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~~~---~~~~~~~~~~--~i~~l~~sp~g~~l~s~s 235 (415)
....+..+..... ..+.+ ++..|++.+..+ +.|.+++.... ..+.+..|.. .+..++|++++.++++..
T Consensus 278 ~~~~l~~~~~~~~-~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 278 KWVKLIDNFEGEY-DYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp CCEEEECSSSSCE-EEEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ceEEeeCCCCcEE-EEEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3455555444322 23444 444454444333 36777776653 2355655544 678899998888888888
Q ss_pred CCCc-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-e---CCCeEEEEEceecc
Q 014977 236 TRGT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-S---DKGTVHIFSLRVRV 294 (415)
Q Consensus 236 ~dg~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s---~dg~i~vwd~~~~~ 294 (415)
.++. .|++||+.+|+.+..+.. +.+.+..+.++|++..|+.. + ..++|++||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8874 166778878887777776 56678999999999866633 2 34789999998776
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.1e-12 Score=118.25 Aligned_cols=245 Identities=9% Similarity=-0.029 Sum_probs=161.7
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
.++...+.+++|+++|++++++. ++.|.+|+.++.+...... .....+..+.+++++.++++...+. ...+.|.+|
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~ 117 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAA 117 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEE
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEEE
Confidence 44566789999999999888887 8899999988755332221 3445688899999987777654310 011489999
Q ss_pred ECCCCCEEEEEE---ccCceeEEEEcCCeEEEEe---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977 120 DDHQSRCIGEFA---FRSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (415)
Q Consensus 120 d~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (415)
|..+++....+. ....+.++.++|++.+++. .+.|+.+|..+++...... ... ....+.+++++.
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~i~~~~dg~ 194 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS--VANGIALSTDEK 194 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES--SEEEEEECTTSS
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC--cccceEECCCCC
Confidence 988877654443 3457899999999987772 2456666665544433222 212 345566677776
Q ss_pred EEEEeCCccCeEEEEEcC--CcceEEE-----ecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 188 VLACPGLQRGQVRIEHFG--LNMIKLI-----NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~--~~~~~~~-----~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
.++++...++.|.+|+.. +.....+ ... ...+..++++++|+++++...++. |.+||. +++.+..+...
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEcC
Confidence 555545567889888773 3333221 111 136788999999998888777888 999998 67777777642
Q ss_pred CC----cccEEEEEeCCCCCEEEEEeCCC----eEEEEEceec
Q 014977 259 VD----RAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVR 293 (415)
Q Consensus 259 ~~----~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~ 293 (415)
.. ...+.+++|+||++.|+.++.++ .-.||.++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 11 11588999999988777666553 3455555544
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=4.2e-14 Score=131.28 Aligned_cols=234 Identities=12% Similarity=0.041 Sum_probs=153.6
Q ss_pred EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccC----CCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKS----GGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
.++|+|||++|+++. ++.|.+||..+.+......+.. +......+.+++++.+++.+... .+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~ 130 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PA 130 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CC
Confidence 899999999998874 4569999998876655444321 12334567899998777655421 12
Q ss_pred CeEEEEECCCCCEEEE-EEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCC-ceeeeEE------eccCCCcceEEEe
Q 014977 114 TKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQI------ETLANLRGLCCLS 181 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~-~~~~~~~------~~~~~~~~~~~~~ 181 (415)
+.|.+||+.+++.+.. +..... ..+.+.|++ .++. .||.+.+|++.. ++..... .....+. .....
T Consensus 131 ~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPA 208 (361)
T ss_dssp EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCE
T ss_pred CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEec
Confidence 8999999999988877 554332 235566654 3333 688888888864 5544221 1111111 11122
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCCcceEEEe---cCc----------cceEEEEeCCCCCEEEEEeC-----------C
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN---AHD----------SHIACFTLTLDGLLLATAST-----------R 237 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~---~~~----------~~i~~l~~sp~g~~l~s~s~-----------d 237 (415)
++ +..+++.. .++.|.+++........+. ... .....++|+|+++.++++.. .
T Consensus 209 ~~--g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 209 LD--KDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp EC--SSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred cc--CCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 33 33444433 5788888776543322211 100 11123789999888776643 3
Q ss_pred CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec--ccC
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR--VVG 296 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~--~~~ 296 (415)
+. |.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.+||.+++ +..
T Consensus 286 ~~-v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 286 AE-IWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp SE-EEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred ce-EEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 46 99999999999999987 33 899999999999998887 99999999998 654
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=2.1e-12 Score=118.20 Aligned_cols=216 Identities=9% Similarity=0.002 Sum_probs=151.6
Q ss_pred CCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEE
Q 014977 64 SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV 139 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l 139 (415)
++.|.+||.++.+....... ..-......+.+..+..+++.. .+ +.|.+||..+++.+.++........+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~-----~~v~viD~~t~~~~~~i~~~~~p~~i 89 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NS-----HVIFAIDINTFKEVGRITGFTSPRYI 89 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GG-----TEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CC-----CEEEEEECcccEEEEEcCCCCCCcEE
Confidence 67899999987553221100 0112234556666666555554 33 89999999999999999877788999
Q ss_pred EEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccC------CCcceEEEecCCCceEEEEeCC-ccCeEEEEEcC-Ccc
Q 014977 140 KLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLA------NLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFG-LNM 208 (415)
Q Consensus 140 ~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~-~dg~v~i~~~~-~~~ 208 (415)
++++++++.+ . ++.|.+||..+++....+.... .+. .+++ + ++.++++ .. .++.|.+++.. .+.
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~--~-~~~lyv~-~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ--Y-GKYVYVN-CWSYQNRILKIDTETDKV 164 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE--E-TTEEEEE-ECTTCCEEEEEETTTTEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE--E-CCEEEEE-cCCCCCEEEEEECCCCeE
Confidence 9988886665 3 7899999999998887776544 222 2333 3 3444443 33 47889887765 444
Q ss_pred eEEEecCccceEEEEeCCCCCEEEEEeCC----------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977 209 IKLINAHDSHIACFTLTLDGLLLATASTR----------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (415)
+..+.. ......++++|+|++++++..+ +. |.++|..+++....+... .......++|+|++++|++
T Consensus 165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEE
Confidence 555554 3345788999999977776654 67 999999999887777642 1236789999999999988
Q ss_pred EeCCCeEEEEEceeccc
Q 014977 279 ASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 279 ~s~dg~i~vwd~~~~~~ 295 (415)
+.. .|.+||+.+++.
T Consensus 242 ~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 242 INN--DIWRMPVEADRV 256 (328)
T ss_dssp ESS--SEEEEETTCSSC
T ss_pred Ecc--EEEEEECCCCce
Confidence 765 799999987763
No 181
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=2.5e-13 Score=138.27 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=136.8
Q ss_pred EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccC-----ceeEEEEcCCeEEEE--eC----------
Q 014977 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS-----DVRSVKLSRDRIVVV--LE---------- 151 (415)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~-----~i~~l~~~~~~~~~~--~d---------- 151 (415)
...+.|++++.+++++ + +.|++||+.+++....+. +.. ...++.|+|||+.++ .+
T Consensus 19 ~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 4467899999999886 5 999999999999877766 321 234589999999887 22
Q ss_pred CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccce----------
Q 014977 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI---------- 219 (415)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i---------- 219 (415)
+.+++||+.+++... +..+.. ......++|+|+.||++ .++.|++|+........+. ++...+
T Consensus 92 ~~~~~~d~~~~~~~~-l~~~~~--~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EERIPN--NTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEEETTTTEECC-SSCCCT--TEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred eEEEEEECCCCcEEE-cccCCC--cceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 678899999987653 433333 45667777888888885 5789999887665444433 222222
Q ss_pred -------EEEEeCCCCCEEEEEeCCC------------------------------------cEEEEEECCC---Cc--E
Q 014977 220 -------ACFTLTLDGLLLATASTRG------------------------------------TLIRIFNTVD---GT--R 251 (415)
Q Consensus 220 -------~~l~~sp~g~~l~s~s~dg------------------------------------~~I~vwd~~~---~~--~ 251 (415)
..+.|||||++||.++.|. . |++||+.+ ++ .
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCCC
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcce
Confidence 3489999999999875321 4 88899988 73 2
Q ss_pred EEEEecC----CCcccEEEEEeCCCCCEEEEEeC----CCeEEEEEceecc
Q 014977 252 LQEVRRG----VDRAEIYSIALSPNVQWLAVASD----KGTVHIFSLRVRV 294 (415)
Q Consensus 252 ~~~~~~~----~~~~~v~~l~~spdg~~l~s~s~----dg~i~vwd~~~~~ 294 (415)
...+... .+...+..++|+|||++++.... +..|++||+.+++
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 2334321 15567999999999997765543 3379999999887
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=5.4e-13 Score=124.87 Aligned_cols=229 Identities=11% Similarity=-0.023 Sum_probs=145.2
Q ss_pred EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-------------------EeeeCCeEEEEec---
Q 014977 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-------------------MLFRCNILALVGA--- 105 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~s~--- 105 (415)
.+.|+|||++|+... ++.|.+|++++.+.......+.. .... ..++|++..++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 478999999999888 77899999987654333222111 1111 1233333322221
Q ss_pred --CCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--eC-------CeEEEEEcCCceeeeEEeccCC
Q 014977 106 --GDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--LE-------HKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 106 --~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~d-------~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
.. +..|.+||+.+++......+...+..+.|+| ++..++ .+ ..|++||+..++.. .+..+..
T Consensus 163 ~~~~-----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 163 HTNP-----TCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp HTCC-----CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred cCCC-----cceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 22 2789999999988776666778899999999 777555 21 47899998665433 2222221
Q ss_pred CcceEEEecCCCceEEEEeCCcc----CeEEEEEcCCcceEEEecCccceEEEEeCC-CCCEEEEEe-------------
Q 014977 174 LRGLCCLSHHSSTSVLACPGLQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLATAS------------- 235 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~d----g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s------------- 235 (415)
...+..+.++|++..|++.+..+ +.|++|+........+..... .. +.|+| +|++|++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 22355566777777666643221 448888876655544443322 23 88999 999888754
Q ss_pred ---CCCcEEEEEECCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEeC-CCeEEEEEce
Q 014977 236 ---TRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVASD-KGTVHIFSLR 291 (415)
Q Consensus 236 ---~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s~-dg~i~vwd~~ 291 (415)
.+.. |++||+.+++.. .+.. +.. .+..++|+|||+.|+.++. ++...||.++
T Consensus 315 ~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 315 NIENDPF-LYVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCCCE-EEEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCc-EEEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2356 999999887653 3443 222 2566789999999887765 4555555554
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=4e-13 Score=123.64 Aligned_cols=223 Identities=15% Similarity=0.146 Sum_probs=145.9
Q ss_pred CceEEEEEeCCCCEEEEEe-C---Cc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC-C-------
Q 014977 45 IELISVSWNQDYGCFAAGT-S---CG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-Q------- 110 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d---~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~------- 110 (415)
..+..++|+|||++|+... + +. |.+|++++.+..... .... +..+.|+|++..|+....+. .
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 4578899999999999877 3 34 666677664433222 2233 78899999986665543210 0
Q ss_pred --------------CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-e--C------C---eEEEEEcCCcee
Q 014977 111 --------------YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-L--E------H---KIYVYSFVDLKL 164 (415)
Q Consensus 111 --------------~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~--d------~---~i~iwd~~~~~~ 164 (415)
.....|.+||+.+++.+..+... .+..+.|+|++ +++ . + . .|+++| +++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence 00257999999888774555444 88899999999 555 2 1 2 355555 5543
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCc-------cCeEEEEEcCCcceEEEecCccceEE-EEeCCCCCEEEEEeC
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------RGQVRIEHFGLNMIKLINAHDSHIAC-FTLTLDGLLLATAST 236 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------dg~v~i~~~~~~~~~~~~~~~~~i~~-l~~sp~g~~l~s~s~ 236 (415)
. .+..+ . ....+ +|++..|++.+.. ...|.+++ .++.......+...+.. +.|+ +| ++++++.
T Consensus 211 ~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 211 E-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp E-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred E-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEec
Confidence 3 33333 2 33444 5566667665433 24677776 44443334455677886 9999 88 8999999
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE-EEEEce
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV-HIFSLR 291 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i-~vwd~~ 291 (415)
++. ++|| +.+++.. .+.. +...|.+++|+| .++++++.++.. .||.++
T Consensus 282 ~~~-~~l~-~~~g~~~-~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 282 EGS-VNLY-IWDGEIK-PIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TTE-EEEE-EESSSEE-EEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCc-EEEE-EcCCceE-EEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 998 9999 8766654 3433 456799999999 677777777654 778776
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=3.9e-13 Score=119.09 Aligned_cols=236 Identities=8% Similarity=-0.071 Sum_probs=157.7
Q ss_pred ceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 46 ELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 46 ~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
...+++++++|++++ +.. ++.|.+|+..+..... .. ..+...+..+.+++++.++++.. + +.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP-FNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC-CCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee-eCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence 688999999999777 434 7889999876533211 11 12234456788888877777655 5 8999999765
Q ss_pred CCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977 124 SRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 124 ~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
... ..+. ....+.++++++++.+++ .++.|.+|+..+............ ....+..++++.++++ ...++.
T Consensus 97 ~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~l~v~-~~~~~~ 172 (270)
T 1rwi_B 97 NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVT-DTDNNR 172 (270)
T ss_dssp SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCC--SCCCEEECTTCCEEEE-EGGGTE
T ss_pred ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCC--CceeEEEeCCCCEEEE-ECCCCE
Confidence 543 2332 235788999999988766 367899998655433222111112 2344555556665544 445678
Q ss_pred EEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977 199 VRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 199 v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
|.+++..+....... .+...+..++++++|.++++...++. |.+||....... .+... +...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~-~~~~~-~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTST-VLPFT-GLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCE-ECCCC-SCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcce-eeccC-CCCCceeEEECCCCCEEE
Confidence 888887765544332 23366889999999987777777888 999998655433 22211 234689999999999888
Q ss_pred EEeCCCeEEEEEceecccC
Q 014977 278 VASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 278 s~s~dg~i~vwd~~~~~~~ 296 (415)
+...++.|++|++...+..
T Consensus 250 ~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEGGGTEEEEECCCGGGSC
T ss_pred EECCCCEEEEEcCCCcccc
Confidence 8888999999999887643
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=2.4e-12 Score=114.57 Aligned_cols=213 Identities=10% Similarity=0.009 Sum_probs=158.7
Q ss_pred CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-
Q 014977 55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF- 132 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~- 132 (415)
.+++|++++ ++.|.+||.++++.+.+...+ ....+.++.+.+++.++++. + +.|..||. +++.+.++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-~~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-KGWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC-TTCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEECC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC-ccCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcCC
Confidence 457888888 999999999888877765542 11356677788999888853 3 78999998 8999999984
Q ss_pred -cCceeEEEEcCCeEEEE-e---CCeEEEEEcCCceeeeEEeccCC---C-cceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977 133 -RSDVRSVKLSRDRIVVV-L---EHKIYVYSFVDLKLLHQIETLAN---L-RGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (415)
Q Consensus 133 -~~~i~~l~~~~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~g~~dg~v~i~~ 203 (415)
...+.++.+.++|.+++ . ++.|..+|. +++.+..+..... . .....+.+.+++.++++ ...++.|..++
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d 152 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVREIA 152 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEEEC
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEEEC
Confidence 35788999999999888 2 456777774 7787777653211 0 11222344566777765 56789999999
Q ss_pred cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC----cccEEEEEeCCCCCEEEEE
Q 014977 204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD----RAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~s~ 279 (415)
..++.+..+... ..+.++.+.++|++++++..++. |..+|..+|+.+.++..... -..+..+...++|.++++.
T Consensus 153 ~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 153 PNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 888888887765 45567788899999998888888 99999999999999874211 1237888899999988877
Q ss_pred e
Q 014977 280 S 280 (415)
Q Consensus 280 s 280 (415)
.
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=5.6e-12 Score=115.28 Aligned_cols=233 Identities=12% Similarity=-0.012 Sum_probs=160.7
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
.....+.+. +++++++.. ++.|.+||..+.+.+.... .......+.+++++.++++...+ +.|.+||..+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~t 114 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPKT 114 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETTT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECCC
Confidence 446777774 344555555 8999999999876654432 33456677887777777776455 9999999999
Q ss_pred CCEEEEEEccC------ceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 124 SRCIGEFAFRS------DVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 124 ~~~~~~~~~~~------~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
++....+.... ....+++..+..+++ . ++.|.++|+.+++.+..+.....+ ..+..+++++++++ +.
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---~~i~~~~dG~l~v~-~~ 190 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---TSLVMDKYNKMWTI-TD 190 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB---CCCEECTTSEEEEE-BC
T ss_pred CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc---cceEEcCCCCEEEE-EC
Confidence 99888887544 667788844444444 2 789999999999988887654432 33445667776655 33
Q ss_pred cc----------CeEEEEEcCC-cceEEEecC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-EecCCCc
Q 014977 195 QR----------GQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDR 261 (415)
Q Consensus 195 ~d----------g~v~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~ 261 (415)
.+ +.|.+++... +....+... ......++|+|++++|+++.. . |.+||..+++.... +... ..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~-~~ 266 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEF-RD 266 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCC-CS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecC-CC
Confidence 33 6788877654 444455432 246789999999999888765 7 99999988875321 1110 13
Q ss_pred ccEEEEEeCC-CCCEEEEE----eCCCeEEEEEceeccc
Q 014977 262 AEIYSIALSP-NVQWLAVA----SDKGTVHIFSLRVRVV 295 (415)
Q Consensus 262 ~~v~~l~~sp-dg~~l~s~----s~dg~i~vwd~~~~~~ 295 (415)
.....++++| +++++++. ..++.|.+||.+ ++.
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 4688999999 45555555 568899999988 654
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.6e-12 Score=130.17 Aligned_cols=239 Identities=7% Similarity=-0.068 Sum_probs=151.4
Q ss_pred CCCCEEEEEe--CCc--EEEEEcc--CCceeEEEe---c-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 54 QDYGCFAAGT--SCG--FRIYNCE--PFKETFRRD---L-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 54 p~g~~la~g~--d~~--v~iw~~~--~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
|+|++++... .+. -.||..+ ..+...... + ..+...+..+.|+|++..++.+..+.......|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899888655 222 2556554 222221111 1 1234567789999999877754432000113899999999
Q ss_pred CCEEEEEEccCceeEEEEcCCeEEEE---eCCe----------------EEEEEcCCceee--eEEeccCCCcceEEEec
Q 014977 124 SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHK----------------IYVYSFVDLKLL--HQIETLANLRGLCCLSH 182 (415)
Q Consensus 124 ~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~ 182 (415)
++.+........+..++|+||++.++ .++. |++|++.+++.. ..+.....+.....+.+
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 240 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence 98776443333477899999998777 3333 999999876532 22333323334566777
Q ss_pred CCCceEEEEeCCc----cCeEEEEEcCC------c--ceEEEecCccceEEEEeCCCCCEEEEEeCC----CcEEEEEEC
Q 014977 183 HSSTSVLACPGLQ----RGQVRIEHFGL------N--MIKLINAHDSHIACFTLTLDGLLLATASTR----GTLIRIFNT 246 (415)
Q Consensus 183 ~~~~~~l~~~g~~----dg~v~i~~~~~------~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----g~~I~vwd~ 246 (415)
++++++|++.... +..|++++... . ....+..+...+.. .|+|+|..|+..+.. +. |.+||+
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~ 318 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF 318 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence 8888888765421 56788887764 2 46677777666655 488999877766542 35 999999
Q ss_pred CCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe--EEEEEceecc
Q 014977 247 VDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT--VHIFSLRVRV 294 (415)
Q Consensus 247 ~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--i~vwd~~~~~ 294 (415)
.+++ ....+..+.....+..++|++++.++++...|+. |++|++.+++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 8774 2334444212236888999988888888888885 4555554444
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=1.9e-11 Score=119.48 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=157.6
Q ss_pred CCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEE
Q 014977 54 QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEF 130 (415)
Q Consensus 54 p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~ 130 (415)
+.+.++++.. ++.|.++|.++.+.+..... ......+.+++++.++..++.+ +.|.+||+. +++.+.++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEEE
Confidence 4444555555 89999999998766554432 2244578899999877777766 999999995 88888888
Q ss_pred EccCceeEEEEc----CCeEEEE----eCCeEEEEEcCCceeeeEEeccCC---------CcceEEEecCCCceEEEEeC
Q 014977 131 AFRSDVRSVKLS----RDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPG 193 (415)
Q Consensus 131 ~~~~~i~~l~~~----~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g 193 (415)
........++|+ |||++++ .++.|.++|..+.+.+..+..... ...+..+..++++..+++.-
T Consensus 237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 866678899999 6987766 689999999999999887754211 11233444444444444445
Q ss_pred CccCeEEEEEcCCcc---eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEec-CC--CcccEEE
Q 014977 194 LQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRR-GV--DRAEIYS 266 (415)
Q Consensus 194 ~~dg~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~-~~--~~~~v~~ 266 (415)
...|.|.+.+..... +..+ ........+.|+|+|++|+++.. ++. |.++|+.+++.+..+.. +. |.+.-..
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred cCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 677888886654321 2222 23445678899999998877664 566 99999999998877765 32 3221222
Q ss_pred EEeCCCCCEEE-EEe-CCCeEEEEEceecc
Q 014977 267 IALSPNVQWLA-VAS-DKGTVHIFSLRVRV 294 (415)
Q Consensus 267 l~~spdg~~l~-s~s-~dg~i~vwd~~~~~ 294 (415)
+ ++|++..+. +.. .+++|.++|..+.+
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 2 578755444 443 46899999998743
No 189
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.54 E-value=3.9e-13 Score=135.00 Aligned_cols=236 Identities=11% Similarity=-0.005 Sum_probs=146.7
Q ss_pred EEEEe--CCCCE-EEEEeC--CcEEEEEcc--CCceeEEEeccC-----CCeeEEEEeeeCCeEEEEecCCCCC-----C
Q 014977 49 SVSWN--QDYGC-FAAGTS--CGFRIYNCE--PFKETFRRDLKS-----GGFRIVEMLFRCNILALVGAGDNSQ-----Y 111 (415)
Q Consensus 49 ~l~~s--p~g~~-la~g~d--~~v~iw~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~d~~-----~ 111 (415)
...|+ |||+. |+.+.+ ..|.+++++ ..+.... +.. +...+..+.|+|++..|+..+.+.. .
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 56565 99998 887774 445555544 1022222 223 5677889999999977776554200 0
Q ss_pred CCCeEEEEECCC------CCEEEEE-EccCceeEEEEcCCeEEEE---eC--------CeEEEEEcC-Cc---eeeeEEe
Q 014977 112 PPTKVIIWDDHQ------SRCIGEF-AFRSDVRSVKLSRDRIVVV---LE--------HKIYVYSFV-DL---KLLHQIE 169 (415)
Q Consensus 112 ~~~~i~vwd~~~------~~~~~~~-~~~~~i~~l~~~~~~~~~~---~d--------~~i~iwd~~-~~---~~~~~~~ 169 (415)
....|.+||+.+ ++..... .+...+..+.|+|||+.++ .+ ..|++||+. ++ +......
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred ceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 114899999988 6654444 4456788899999998887 23 379999998 56 3333333
Q ss_pred ccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCccc---------eEEEEeCCCCCEEEEEeCCC
Q 014977 170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSH---------IACFTLTLDGLLLATASTRG 238 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~---------i~~l~~sp~g~~l~s~s~dg 238 (415)
.+.. ....+.++|+++++ +++..++...| ++........+..+... +..++|+|+++++++++. +
T Consensus 239 ~~~~--~~~~~~~spdg~l~-~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 239 GPEE--AIAQAEWAPDGSLI-VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp ETTB--CEEEEEECTTSCEE-EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred CCCc--eEcceEECCCCeEE-EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 3333 45566677777754 44667784445 55434444443333222 467899999999999998 8
Q ss_pred cEEEEE--ECCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCe--EEEEEceecc
Q 014977 239 TLIRIF--NTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGT--VHIFSLRVRV 294 (415)
Q Consensus 239 ~~I~vw--d~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~--i~vwd~~~~~ 294 (415)
. ++|| |+.+++ +..+.. +...+..+ +++++.-++++++.+.. |++||+.+++
T Consensus 315 ~-~~l~~~d~~~~~-~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 315 A-AVLGILDPESGE-LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp S-CEEEEEETTTTE-EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred c-cEEEEEECCCCc-EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8 8888 655554 566665 55567766 55444334445566654 4444554554
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=5.8e-12 Score=113.31 Aligned_cols=194 Identities=8% Similarity=0.002 Sum_probs=133.4
Q ss_pred CCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-e--CCeEEEEEc
Q 014977 85 SGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSF 159 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~ 159 (415)
.+......+.|++++. +++++..+ +.|..|+..++ ...+. +...+.++++++++.+++ . ++.|.+||.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred cCCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 3444566788999885 56665555 89999998877 55555 567789999999998877 3 578999999
Q ss_pred CCceeeeEEeccCC--CcceEEEecCCCceEEEEe---CC-------------ccCeEEEEEcCCcceEEEecCccceEE
Q 014977 160 VDLKLLHQIETLAN--LRGLCCLSHHSSTSVLACP---GL-------------QRGQVRIEHFGLNMIKLINAHDSHIAC 221 (415)
Q Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---g~-------------~dg~v~i~~~~~~~~~~~~~~~~~i~~ 221 (415)
.+++.......... ...+..+..++++.++++. |. ..+.|..++.. ..+..+..+......
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 77775443322111 1123345666777776642 11 12345545544 445555666677889
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEECC-CCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 222 FTLTLDGLLLATASTRGTLIRIFNTV-DGTR---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 222 l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
++|+|+|++|++.+.++. |++||+. +++. ...+ .. +...+.+++++++|+++++. ++.|.+|+.+
T Consensus 177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 999999998877777788 9999987 5554 3344 21 44567789999999876655 7889999975
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=9.3e-12 Score=112.69 Aligned_cols=235 Identities=9% Similarity=0.010 Sum_probs=157.5
Q ss_pred CCceEEEEEeCCCCEEEE-------Ee-CCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977 44 EIELISVSWNQDYGCFAA-------GT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN-ILALVGAGDNSQY 111 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~-------g~-d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~s~~~d~~~ 111 (415)
-....+++|+++|.++++ +. ++.|.+|+..+.+.... .. ......+..+.++++ +.++++...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---- 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQLFVADMR---- 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSEEEEEETT----
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-EecccCCCCCCCceEEEecCCCcEEEEECC----
Confidence 345689999999988887 45 88999999876543221 11 012345778889998 876666543
Q ss_pred CCCeEEEEECCCCCEEEE-EEc-----cCceeEEEEcCCeEEEE-e--C---------------CeEEEEEcCCceeeeE
Q 014977 112 PPTKVIIWDDHQSRCIGE-FAF-----RSDVRSVKLSRDRIVVV-L--E---------------HKIYVYSFVDLKLLHQ 167 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~-~~~-----~~~i~~l~~~~~~~~~~-~--d---------------~~i~iwd~~~~~~~~~ 167 (415)
+.|.+||.. ++.... ... ...+.++++++++.+.+ . + +.|..||.. ++....
T Consensus 92 --~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 92 --LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp --TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred --CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 579999987 765433 221 23588999999998777 2 2 467777765 544332
Q ss_pred EeccCCCcceEEEecC----CCceEEEEeCCccCeEEEEEcC--Cc-----ceEEEecCc-cceEEEEeCCCCCEEEEEe
Q 014977 168 IETLANLRGLCCLSHH----SSTSVLACPGLQRGQVRIEHFG--LN-----MIKLINAHD-SHIACFTLTLDGLLLATAS 235 (415)
Q Consensus 168 ~~~~~~~~~~~~~~~~----~~~~~l~~~g~~dg~v~i~~~~--~~-----~~~~~~~~~-~~i~~l~~sp~g~~l~s~s 235 (415)
... .. ....+.++ +++..+.++...++.|.+|+.. +. ....+..+. ..+..++++++|+++++..
T Consensus 168 ~~~-~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTA-FQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEE-ES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccC-CC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 222 11 22344445 7776555555567888887654 22 112222333 5678899999999888877
Q ss_pred CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEceec
Q 014977 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLRVR 293 (415)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~~ 293 (415)
.++. |.+||..+++.+..+.. +...+.+++|+++|+.|+++ ..++.|..|++...
T Consensus 245 ~~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 245 GSSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 7888 99999887877666665 44578999999999955544 45678999998754
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=2.5e-10 Score=102.32 Aligned_cols=232 Identities=7% Similarity=-0.048 Sum_probs=160.9
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
....+.++++.++|+++++.. ++.|.+|+.+ .+ .....+......+..+.+++++.++++...+ +.|..+|.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d~ 90 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLSK 90 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEEecCC-----CeEEEECC
Confidence 456789999999999888776 8899999987 33 2233333344667888888888777776554 88999997
Q ss_pred CCCCEEEEEE---ccCceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
. ++.. .+. ....+.++++.+++.+.+ . ++.|..||.. ++.. .+...........+..++++.+.++ ...
T Consensus 91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~ 165 (300)
T 2qc5_A 91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQ 165 (300)
T ss_dssp T-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred C-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecC
Confidence 7 6553 333 246789999999887766 2 6789999976 5544 2322212235566777777775544 444
Q ss_pred cCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 196 RGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
++.|..++..++... +. .+...+..++++++|++.++....+. |.+||. +++... +........+.+++++++|
T Consensus 166 ~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 166 NNSIGRITNTGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGKNS 241 (300)
T ss_dssp TTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECSTT
T ss_pred CCeEEEECCCCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECCCC
Confidence 677877776544333 32 33456889999999987777666778 999998 565543 2221134568899999999
Q ss_pred CEEEEEeCCCeEEEEEc
Q 014977 274 QWLAVASDKGTVHIFSL 290 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~ 290 (415)
++.++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 97766666788999987
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=2.4e-13 Score=137.36 Aligned_cols=244 Identities=8% Similarity=-0.075 Sum_probs=156.7
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ---- 110 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---- 110 (415)
.+|...+..++|||||++||.+. +..|++||+++++......+.. .....+.|++++..|+....+..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence 45667899999999999999554 3579999999866430111211 11146789999877777665411
Q ss_pred ----CCCCeEEEEECCCCCE--EEEEE---ccCceeEEEEcCCeEEEE---eCC----eEEEEEcCCceeeeEEeccCCC
Q 014977 111 ----YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---LEH----KIYVYSFVDLKLLHQIETLANL 174 (415)
Q Consensus 111 ----~~~~~i~vwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~~~---~d~----~i~iwd~~~~~~~~~~~~~~~~ 174 (415)
.....|++|++.+++. ...+. +...+..+.|+|||++++ .++ .|++|+..+++. ..+..+...
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~ 273 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA 273 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence 0123499999988762 22232 345788999999998877 344 677777655543 334333332
Q ss_pred cceEEEecCCCceEEEEeCC---ccCeEEEEEcCCcc---eEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 175 RGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLNM---IKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~~---~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
.. ...+ +++.+++. +. .++.|.+|+..... ...+..+ ...+..++|+ ++.++++...|+. .+||.+
T Consensus 274 ~~--~~~~-~~g~l~~~-s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~ 347 (695)
T 2bkl_A 274 KY--EVHA-WKDRFYVL-TDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVA 347 (695)
T ss_dssp CE--EEEE-ETTEEEEE-ECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEE
T ss_pred eE--EEEe-cCCcEEEE-ECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEE
Confidence 22 2222 23444433 33 25778888775533 2444444 4567888888 7778888888987 777755
Q ss_pred C-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCeEEEEEceecc
Q 014977 247 V-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRV 294 (415)
Q Consensus 247 ~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~i~vwd~~~~~ 294 (415)
. +++....+... ..+.+..++++|++..|+... ..++|++||+.+++
T Consensus 348 ~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 348 TLKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eCCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4 46666666542 255788899999998776333 34689999998775
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=2.5e-12 Score=119.23 Aligned_cols=222 Identities=9% Similarity=-0.012 Sum_probs=137.7
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC-----CCCCCeEEEEECCCCCEEEEEEc------
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-----QYPPTKVIIWDDHQSRCIGEFAF------ 132 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~~~~~~i~vwd~~~~~~~~~~~~------ 132 (415)
|+.|.+||.++.+.... +..+. .. .+.+++++..+..+.... .-.++.|.+||..+++.+.++..
T Consensus 30 d~~v~v~D~~t~~~~~~--i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGM--VPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCEEEE--EECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeEEEE--ecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 56899999988765443 32333 33 889999987666543100 00126799999999999988872
Q ss_pred -cCceeEEEEcCCeEEEE---e--CCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977 133 -RSDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG 205 (415)
Q Consensus 133 -~~~i~~l~~~~~~~~~~---~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~ 205 (415)
......++++|++++++ . ++.|.+||+.+++.+.. +..... ....+.+++...+++ .+.||.+.++...
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~--~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMT--ICGDGGLLTINLG 181 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEE--EETTSSEEEEEEC
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEE--ECCCCcEEEEEEC
Confidence 24567899999998876 2 57899999999988877 543221 113344444333333 3357777765543
Q ss_pred --CcceEEE------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE--EEEEecCC----C----cccEEEE
Q 014977 206 --LNMIKLI------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGV----D----RAEIYSI 267 (415)
Q Consensus 206 --~~~~~~~------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~----~----~~~v~~l 267 (415)
++..... ..+..++ .+.+++++..++..+.++. |.++|+..... ...+.... . ......+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 3322111 1122222 2334577777777888898 99999875542 22222100 0 0111237
Q ss_pred EeCCCCCEEEEEeC-----------CCeEEEEEceeccc
Q 014977 268 ALSPNVQWLAVASD-----------KGTVHIFSLRVRVV 295 (415)
Q Consensus 268 ~~spdg~~l~s~s~-----------dg~i~vwd~~~~~~ 295 (415)
+|+|+++.++++.. .+.|.+||+.+++.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~ 298 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR 298 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence 89999888877643 34899999988774
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=9.9e-13 Score=132.86 Aligned_cols=231 Identities=11% Similarity=-0.006 Sum_probs=147.9
Q ss_pred eCCCCEEEEEe-CC---cEEEEEcc--CCceeEEEec----cCCCeeEEEEeeeCCeEEEE-----ecCCCCCCCCCeEE
Q 014977 53 NQDYGCFAAGT-SC---GFRIYNCE--PFKETFRRDL----KSGGFRIVEMLFRCNILALV-----GAGDNSQYPPTKVI 117 (415)
Q Consensus 53 sp~g~~la~g~-d~---~v~iw~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~-----s~~~d~~~~~~~i~ 117 (415)
+|+|++++... ++ .-.||..+ ..+....... .++...+..+.|+||+..++ +++.+ ..|+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~ 150 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH 150 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence 47899888766 33 35566654 2222221111 13445688899999998887 44444 7999
Q ss_pred EEECCCCCEE-EEEEccCceeEEEEcCCeEEEE---eCCe-------------EEEEEcCCcee--eeEEeccCCCcceE
Q 014977 118 IWDDHQSRCI-GEFAFRSDVRSVKLSRDRIVVV---LEHK-------------IYVYSFVDLKL--LHQIETLANLRGLC 178 (415)
Q Consensus 118 vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~---~d~~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~ 178 (415)
+||+.+++.+ ...........++|+||++.++ .+.. |++|++.+++. ...+..........
T Consensus 151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 9999999864 2111111126899999998777 3443 99999987763 22333333333566
Q ss_pred EEecCCCceEEEEeCCcc-C--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcE-
Q 014977 179 CLSHHSSTSVLACPGLQR-G--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTR- 251 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~d-g--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~- 251 (415)
.+.+++++++|+++...+ + .|.+++........+..+...+....+ ++|.+++... .++. |.+||+.+++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~ 308 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARA 308 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGG
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCcc
Confidence 777788888887754333 3 455554444456667777666677767 5666444444 2467 99999987753
Q ss_pred -EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 252 -LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 252 -~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
...+..+.....+..++|+ ++.++++...|+..+||.+.
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2334332124568888998 77888899999998888776
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=2.9e-10 Score=111.11 Aligned_cols=237 Identities=15% Similarity=0.068 Sum_probs=160.2
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeee----CCeEEEEecCCCCCCCCCeEE
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFR----CNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~~~~~~i~ 117 (415)
..+..+.|+|||+++++++ ++.|.+||+. +.+...... . ......+.++ |++.+++.+... ++.|.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~-G~~P~~ia~s~~~~pDGk~l~v~n~~----~~~v~ 269 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I-GSEARSIETSKMEGWEDKYAIAGAYW----PPQYV 269 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C-CSEEEEEEECCSTTCTTTEEEEEEEE----TTEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c-CCCCceeEEccccCCCCCEEEEEEcc----CCeEE
Confidence 4567999999999999988 9999999995 554443322 2 3345678888 587555444332 38999
Q ss_pred EEECCCCCEEEEEEcc------------CceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977 118 IWDDHQSRCIGEFAFR------------SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~------------~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (415)
|+|..+.+.+..+... ..+..+..++++..++ .+|.|.++|..+.+.+....... ......+.
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~ 348 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGG 348 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEE
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCce
Confidence 9999999999887621 2577888888755444 57999999987754333222111 11344566
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-----CccceEEEEeCCCCCEE-EEEe-CCCcEEEEEECCC-----
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-----HDSHIACFTLTLDGLLL-ATAS-TRGTLIRIFNTVD----- 248 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-----~~~~i~~l~~sp~g~~l-~s~s-~dg~~I~vwd~~~----- 248 (415)
+++++++++++...++.|.+++... +.+..+.. |.+.-..+ ++|++..+ +++. .++. |.++|..+
T Consensus 349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~~~~ 426 (567)
T 1qks_A 349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDPEGHPD 426 (567)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTT
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCCCCCcc
Confidence 7778888776666778899866554 44444443 22212122 57875544 4443 3577 99999987
Q ss_pred --CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-------CCeEEEEEceec
Q 014977 249 --GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD-------KGTVHIFSLRVR 293 (415)
Q Consensus 249 --~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-------dg~i~vwd~~~~ 293 (415)
.+.++++... ...-..+..+|++++|.+... .++|.|+|+.+.
T Consensus 427 ~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 427 NAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6788888762 223345778999999998763 358999999987
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=1.4e-10 Score=107.67 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=152.1
Q ss_pred EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.++++|||++|+++. ++.|.+||..+.+......+... ......+.++|++..+..+... .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---A 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---C
Confidence 899999999998874 46799999987766554443200 1234478899998877765431 1
Q ss_pred CCeEEEEECCCCCEEEE-EEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCCceeeeEEe-----ccCCCcce-EEEe
Q 014977 113 PTKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIE-----TLANLRGL-CCLS 181 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~-~~~~ 181 (415)
.+.|.++| .+++.+.. +..... +.+.+++ .++. .|+.+.++|. +++.+.... ....++.. ..+.
T Consensus 147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 27899999 99999888 664433 3344443 2233 6899999999 877664332 11111100 1222
Q ss_pred cCCCceEEEEeCCccCeEEEEEcCCcc---eEEEec----------CccceEEEEeCCCCCEEEEEeC----------CC
Q 014977 182 HHSSTSVLACPGLQRGQVRIEHFGLNM---IKLINA----------HDSHIACFTLTLDGLLLATAST----------RG 238 (415)
Q Consensus 182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~---~~~~~~----------~~~~i~~l~~sp~g~~l~s~s~----------dg 238 (415)
.+.. .++ +.. ..+.+.+.+..... +..+.. .......+.++|+++.|+++.. .+
T Consensus 222 ~~~~-~~~-~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 222 NKSG-RIV-WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred ecCC-EEE-EEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 3322 233 323 46677775554322 122211 1122344789999998777653 34
Q ss_pred cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecccCC
Q 014977 239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~~~~ 297 (415)
. |.++|+.+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++...
T Consensus 299 ~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 299 E-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred e-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 6 999999999999999753 3578999999999 777776 48999999999988653
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.3e-10 Score=104.67 Aligned_cols=222 Identities=11% Similarity=0.049 Sum_probs=148.0
Q ss_pred CCCceEEEEEeCCCCEE-EEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 43 DEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
+..-..+..|++++..| ++.. ++.|..|+.++.... .. .....+..+.+++++.++++. + +.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~dG~l~v~~--~-----~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQSGGYVATI--G-----TKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBTTSSEEEEE--T-----TEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECCCCCEEEEE--C-----CeEEEEE
Confidence 33456688999965554 4554 889999998875432 22 223457788899988876664 2 7899999
Q ss_pred CCCCCEEEEEEc-----cCceeEEEEcCCeEEEEeC------------CeEEEEEcC-CceeeeEEeccCCCcceEEEec
Q 014977 121 DHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE------------HKIYVYSFV-DLKLLHQIETLANLRGLCCLSH 182 (415)
Q Consensus 121 ~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~d------------~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (415)
..+++....... ...+++++++|+|++.+.+ ....+|.+. +++...... ... ....+.+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~--~pngi~~ 156 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-QVD--ISNGLDW 156 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-EES--BEEEEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-ccc--cccceEE
Confidence 888765443332 2357889999999877721 233455443 233332222 222 3345666
Q ss_pred CCCceEEEEeCCccCeEEEEEcC---Ccc-----eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFG---LNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~---~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (415)
++++..++++.+.++.|.+++.+ +.. ...+..+......++++++|++.++....+. |.+||..+++.+..
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQT 235 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEE
Confidence 67776666556667888887653 221 1122233456789999999998887777788 99999988999988
Q ss_pred EecCCCcccEEEEEeC-CCCCEEEEEeC
Q 014977 255 VRRGVDRAEIYSIALS-PNVQWLAVASD 281 (415)
Q Consensus 255 ~~~~~~~~~v~~l~~s-pdg~~l~s~s~ 281 (415)
+.. ....+++++|. |+++.|++.+.
T Consensus 236 i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 886 44579999998 88887765554
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.45 E-value=6.4e-10 Score=99.55 Aligned_cols=235 Identities=8% Similarity=-0.047 Sum_probs=158.6
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+...+.++++.++|.++++.. ++.|..|+.+. ......+......+..+.+.+++.++++...+ +.|.+||.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~ 127 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD 127 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC
Confidence 446799999999999888877 78899998762 22222232345567888899988777776554 89999997
Q ss_pred CCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
+++...... ....+..+++.+++.+.+ .++.|.+||. +++... +...........+..++++.+.++ ...+
T Consensus 128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~~~ 203 (299)
T 2z2n_A 128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFV-EIIG 203 (299)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETTT
T ss_pred -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEE-ccCC
Confidence 665443222 345789999999987776 2578999998 665443 222222224566777777776554 3456
Q ss_pred CeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 197 GQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
+.|.+++.++. +..+ ..+...+..++++++|+++++...++. |.+||. +++ +..+....+...+.++++ ++|+
T Consensus 204 ~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 204 NKIGRITTSGE-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGET 278 (299)
T ss_dssp TEEEEECTTCC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSC
T ss_pred ceEEEECCCCc-EEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCCC
Confidence 77888777444 3333 234567889999999997776657788 999998 554 334432223457899999 8888
Q ss_pred EEEEEeCCCeEEEEEceecc
Q 014977 275 WLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 275 ~l~s~s~dg~i~vwd~~~~~ 294 (415)
+.++.. .+.|..++.++++
T Consensus 279 l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 279 IWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEET-TTEEEEEEEC---
T ss_pred EEEEec-CCcEEEEEcCccc
Confidence 766655 5668888877653
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=9.7e-11 Score=110.30 Aligned_cols=236 Identities=8% Similarity=-0.010 Sum_probs=155.7
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
-.....++|+++++++++.. ++.|++|+.++........ .... .. +.+++++..++.+..+ ....|.+++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~~~~-~~-ia~~~~g~~l~~~d~~---~~~~I~~~d~~ 202 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--GFKG-GK-PAVTKDKQRVYSIGWE---GTHTVYVYMKA 202 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--TCCB-CB-CEECTTSSEEEEEBSS---TTCEEEEEEGG
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--cCCC-Cc-eeEecCCCcEEEEecC---CCceEEEEEcC
Confidence 34688999999999777777 7899999998644332222 2222 22 7788887655554443 00289999987
Q ss_pred CCCEEEEE----E-ccCceeEEEEcC-CeEEEE--eCCeEEEEEcCCceeeeE----EeccCCCcceE-EEecCCC-ceE
Q 014977 123 QSRCIGEF----A-FRSDVRSVKLSR-DRIVVV--LEHKIYVYSFVDLKLLHQ----IETLANLRGLC-CLSHHSS-TSV 188 (415)
Q Consensus 123 ~~~~~~~~----~-~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~-~~~~~~~-~~~ 188 (415)
.+.....+ . ....+.+++++| ++.+++ .++.|+.||..++..... ...... .... .+.++++ +.+
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-TNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-CSSCCEEEEETTTTEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-CCccccEEEeCCCCEE
Confidence 76654454 2 346678899999 676666 567899999877653222 111111 1111 4555553 444
Q ss_pred EEEeCCccCeEEEEEcCCcceEEEecCc---------------cceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEE
Q 014977 189 LACPGLQRGQVRIEHFGLNMIKLINAHD---------------SHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRL 252 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------------~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~ 252 (415)
+ ++...++.|+.++.++. +..+.++. .....++++++|+++++-. .++. |+.||+.+++..
T Consensus 282 y-v~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~ 358 (409)
T 3hrp_A 282 Y-MSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVS 358 (409)
T ss_dssp E-EEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEE
T ss_pred E-EEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEE
Confidence 4 44567788888887765 33343332 3478999999999777766 6777 999998787654
Q ss_pred EEEecC-C------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 253 QEVRRG-V------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 253 ~~~~~~-~------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.+.+. . .-.....++++++|.++++-..++.|+.++++
T Consensus 359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 44331 0 01358899999999888888888889888763
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.2e-10 Score=105.29 Aligned_cols=195 Identities=7% Similarity=-0.012 Sum_probs=128.3
Q ss_pred eEEEEeeeCCeEEEEe-------cCCCCCCCCCeEEEEECCCCCEEEEEE-----ccCceeEEEEcCC-eEEEE--eCCe
Q 014977 89 RIVEMLFRCNILALVG-------AGDNSQYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRD-RIVVV--LEHK 153 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s-------~~~d~~~~~~~i~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~-~~~~~--~d~~ 153 (415)
....+.|++++.++++ ...+ +.|.+||..+++...... +...+.++.++++ +.+++ ..+.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred CccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 3456778888877776 4444 899999988887654332 3467899999999 87655 3568
Q ss_pred EEEEEcCCceeeeE-EeccC--CCcceEEEecCCCceEEEEeCCcc---------------CeEEEEEcCCcceEEEecC
Q 014977 154 IYVYSFVDLKLLHQ-IETLA--NLRGLCCLSHHSSTSVLACPGLQR---------------GQVRIEHFGLNMIKLINAH 215 (415)
Q Consensus 154 i~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d---------------g~v~i~~~~~~~~~~~~~~ 215 (415)
|.+||.. ++.... ..... ....+..+..++++.++++.. .+ +.|..++..++ ...+..+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec-CcccccccccccccCCCCeEEEECCCCC-EEEeccC
Confidence 9999987 665432 22111 112345666777777665533 33 45555655533 3333334
Q ss_pred ccceEEEEeC----CCCCEEEEE-eCCCcEEEEEECC-CCcE-----EEEEecCCCc-ccEEEEEeCCCCCEEEEEeCCC
Q 014977 216 DSHIACFTLT----LDGLLLATA-STRGTLIRIFNTV-DGTR-----LQEVRRGVDR-AEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 216 ~~~i~~l~~s----p~g~~l~s~-s~dg~~I~vwd~~-~~~~-----~~~~~~~~~~-~~v~~l~~spdg~~l~s~s~dg 283 (415)
......++++ |+|+.|+.+ ..++. |.+||+. +++. ...+.. +. ..+..++++++|+++++...++
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCCEEEEEcCCC
Confidence 4556889999 999766555 45677 9999986 4542 222222 22 4678899999999888887888
Q ss_pred eEEEEEceecc
Q 014977 284 TVHIFSLRVRV 294 (415)
Q Consensus 284 ~i~vwd~~~~~ 294 (415)
.|.+||.++++
T Consensus 248 ~i~~~d~~~g~ 258 (314)
T 1pjx_A 248 HIEVFGPDGGQ 258 (314)
T ss_dssp EEEEECTTCBS
T ss_pred EEEEEcCCCCc
Confidence 99999987654
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=9.4e-10 Score=98.93 Aligned_cols=198 Identities=11% Similarity=0.033 Sum_probs=131.9
Q ss_pred eEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeee
Q 014977 89 RIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLH 166 (415)
Q Consensus 89 ~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~ 166 (415)
..-...|++ ++.++++.... +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVV 87 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEE
T ss_pred cccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEE
Confidence 344677887 45566665554 8999999887765 4556778899999999998777 78899999998876543
Q ss_pred EEeccC--CCcceEEEecCCCceEEEEeCC----------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE-
Q 014977 167 QIETLA--NLRGLCCLSHHSSTSVLACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT- 233 (415)
Q Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~l~~~g~----------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s- 233 (415)
...... .......+..++++.+++.+.. ..+.|...+..++ ...+..+....+.++|+|+++.|+.
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEe
Confidence 332211 1224566777888876654311 1123333443333 3333344455688999999987654
Q ss_pred EeCCCcEEEEEEC--CCCcEE--EEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 234 ASTRGTLIRIFNT--VDGTRL--QEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 234 ~s~dg~~I~vwd~--~~~~~~--~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+.++. |.+||+ .++... ..+.. ......+..++++++|++.++....+.|.+||.++++
T Consensus 167 ~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 167 DSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred cCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 455677 999987 456532 12221 1133567899999999988887788899999988776
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=3.3e-11 Score=106.55 Aligned_cols=194 Identities=8% Similarity=-0.031 Sum_probs=127.0
Q ss_pred eEEEEeeeCCeEEEE-ecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCcee
Q 014977 89 RIVEMLFRCNILALV-GAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL 164 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~-s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~ 164 (415)
....+.+++++.+++ +...+ +.|.+|+..++....... ....+.++++++++.+++ .++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence 567788888887777 64554 899999965544321111 235688999999988666 368999999765443
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
..+.... ......+..++++.++++ ...++.|.+++......... ......+..++++++|+++++...++. |.+
T Consensus 100 -~~~~~~~-~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~ 175 (270)
T 1rwi_B 100 -TVLPFDG-LNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVK 175 (270)
T ss_dssp -EECCCCS-CSSEEEEEECTTCCEEEE-EGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEE
T ss_pred -eeeecCC-cCCCcceEECCCCCEEEE-ECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEE
Confidence 2222111 124566667777766554 44577888875443322221 223346788999999997777777788 999
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
||............ ....+.+++++++|.++++...++.|.+|+....
T Consensus 176 ~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 176 LEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp ECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99876665432222 2256889999999987777777888999997554
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=2.7e-11 Score=123.30 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=151.6
Q ss_pred CCCCceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC----
Q 014977 42 VDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY---- 111 (415)
Q Consensus 42 ~h~~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~---- 111 (415)
+|...+..++|||||++||.+. +| .|++||+++++... ..+ ....+..+.|+++ ..|+.+..+...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-DEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-EEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-ccC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 3445788999999999999876 33 59999999866432 221 1222246778998 555554443110
Q ss_pred -----CCCeEEEEECCCCCE--EEEEEc---cCceeEEEEcCCeEEEE---eC-----CeEEEEEcCCc--eeeeEEecc
Q 014977 112 -----PPTKVIIWDDHQSRC--IGEFAF---RSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDL--KLLHQIETL 171 (415)
Q Consensus 112 -----~~~~i~vwd~~~~~~--~~~~~~---~~~i~~l~~~~~~~~~~---~d-----~~i~iwd~~~~--~~~~~~~~~ 171 (415)
....|++|++.+++. ...+.. ...+..+.|+|||++++ .+ ..|++||+.++ +....+..+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 024699999887752 223332 23588999999998777 33 38999999876 314445444
Q ss_pred CCCcceEEEecCCCceEEEEeCCc---cCeEEEEEcCC--cceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 172 ANLRGLCCLSHHSSTSVLACPGLQ---RGQVRIEHFGL--NMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~g~~---dg~v~i~~~~~--~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
..... ..+. +++..|++.... ++.|.+++... .....+ ..+...+..++++ ++.++++...|+. .+||.
T Consensus 316 ~~~~~-~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~ 390 (741)
T 1yr2_A 316 LKAQW-DFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA 390 (741)
T ss_dssp SSSCE-EEEE--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred CCceE-EEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence 33222 2233 344455544332 44577777665 233333 4445556677887 6667888888887 77665
Q ss_pred CC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCeEEEEEceecc
Q 014977 246 TV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRV 294 (415)
Q Consensus 246 ~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~i~vwd~~~~~ 294 (415)
+. +++....+... ..+.+..+.++|+++.|+... ..++|++||+.+++
T Consensus 391 ~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 43 46666666532 356789999999988666332 34789999998765
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=8.9e-11 Score=119.43 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=146.5
Q ss_pred eCCCCEEEEEe-CC---cEEEEEccCC-----ceeEEEe---c-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 53 NQDYGCFAAGT-SC---GFRIYNCEPF-----KETFRRD---L-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 53 sp~g~~la~g~-d~---~v~iw~~~~~-----~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
+|+|++++... ++ .-.||..+.. +...... + .++...+..+.|+||+..++.+..+.......|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999988766 33 3567766432 2211111 1 123346778999999987766543210011469999
Q ss_pred ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC--------------CeEEEEEcCCcee--eeEEeccCCCcceEEE
Q 014977 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE--------------HKIYVYSFVDLKL--LHQIETLANLRGLCCL 180 (415)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d--------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 180 (415)
|+.+++.+........+..++|+|| +.++ .+ ..|++|++.+++. ...+.....+.....+
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999988665333333467899999 7666 22 2499999977653 2233333333346677
Q ss_pred ecCCCceEEEEeCCc----cCeEEEEEcCCc--c-eEEEecCccceEEEEeCCCCCEEEEEeC----CCcEEEEEECCCC
Q 014977 181 SHHSSTSVLACPGLQ----RGQVRIEHFGLN--M-IKLINAHDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDG 249 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~----dg~v~i~~~~~~--~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~ 249 (415)
.+++++++|++.... ...|++++.... . ...+..+...+.... +|+|+.|+..+. ++. |.+||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~ 351 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS 351 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence 788888887765422 337888776554 4 566666665555554 488988877765 456 999999875
Q ss_pred -cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
.....+..+ +...+..++|+ ++.++++...|+..+||.++
T Consensus 352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 233344332 44467778887 66778888899988888766
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=1.4e-10 Score=106.80 Aligned_cols=235 Identities=10% Similarity=-0.032 Sum_probs=150.8
Q ss_pred EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.++++|||++++++. ++.|.+||..+.+......+..+ ......+.+++++..+..+... .
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~ 158 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---P 158 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---S
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---C
Confidence 499999999887654 56799999998776655444221 1234457789988755544321 1
Q ss_pred CCeEEEEECCCCCEEEEEEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCC-ceeeeEEeccC----CCcce-EEEec
Q 014977 113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQIETLA----NLRGL-CCLSH 182 (415)
Q Consensus 113 ~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~-~~~~~~~~~~~----~~~~~-~~~~~ 182 (415)
++.|.++|+.+++.+.++...+. ..+.|.+ .++. .||++.+.++.+ ++......... .++.. ..+.
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~- 234 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS- 234 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-
T ss_pred CCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-
Confidence 28999999999999999875432 1122322 2222 688888888865 55432211111 11110 1222
Q ss_pred CCCceEEEEeCCccCeEEEEEcCCcceE---EEe----------cCccceEEEEeCCCCCEEEEEeC----------CCc
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGLNMIK---LIN----------AHDSHIACFTLTLDGLLLATAST----------RGT 239 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~---~~~----------~~~~~i~~l~~sp~g~~l~s~s~----------dg~ 239 (415)
.+++++++. . .+|.|++.+..+.... .+. ........++++++++.|+.... ...
T Consensus 235 ~~dG~~~~v-s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~ 312 (386)
T 3sjl_D 235 QKAGRLVWP-T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 312 (386)
T ss_dssp TTTTEEEEE-B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred cCCCcEEEE-e-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence 245655443 3 4788998776544322 221 01223345778999988877643 135
Q ss_pred EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCeEEEEEceecccC
Q 014977 240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~i~vwd~~~~~~~ 296 (415)
|.++|+.+++.+..+.. ...+++|++++|++ +|++. ..++.|.++|..+++..
T Consensus 313 -V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 313 -VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp -EEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred -EEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999999999999885 34688999999997 66665 45899999999998864
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=2.1e-09 Score=98.08 Aligned_cols=218 Identities=9% Similarity=0.049 Sum_probs=145.0
Q ss_pred CceEEEEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 45 IELISVSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 45 ~~V~~l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....+..|+|++.. ++++. ++.|..|+.++.... ...+ ...+.++.+.+++.++++.. ..|.+||..
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~ 117 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIASD-------DGLFLRDTA 117 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence 34578899998554 45555 889999998865432 2222 34577888999988877753 459999998
Q ss_pred CCCEEEEEEc-----cCceeEEEEcCCeEEEE-e-C-------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977 123 QSRCIGEFAF-----RSDVRSVKLSRDRIVVV-L-E-------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (415)
Q Consensus 123 ~~~~~~~~~~-----~~~i~~l~~~~~~~~~~-~-d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (415)
+++....... ...+.++.++++|.+.+ . + +.|+.++ +++...... ... ....+.+++++..
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~--~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DIS--IPNSICFSPDGTT 192 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EES--SEEEEEECTTSCE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCc--ccCCeEEcCCCCE
Confidence 8876443332 13588999999998777 2 1 4566666 454433222 211 2345666677766
Q ss_pred EEEeCCccCeEEEEEcC---C-cc--eEEE---ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977 189 LACPGLQRGQVRIEHFG---L-NM--IKLI---NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (415)
Q Consensus 189 l~~~g~~dg~v~i~~~~---~-~~--~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (415)
++++...++.|.+++.. + .. ...+ .........++++++|.+.++...++. |.+||. +++.+..+..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~-- 268 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV-- 268 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--
Confidence 65555567888887753 3 21 1222 223456778999999998777766778 999998 6887777775
Q ss_pred CcccEEEEEeC-CCCCEEEEEeCC
Q 014977 260 DRAEIYSIALS-PNVQWLAVASDK 282 (415)
Q Consensus 260 ~~~~v~~l~~s-pdg~~l~s~s~d 282 (415)
....+.+++|+ ++++.|++++..
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCcEEEEEecCCCCEEEEEecC
Confidence 44569999998 888877655443
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=3.1e-09 Score=95.08 Aligned_cols=232 Identities=9% Similarity=-0.047 Sum_probs=155.9
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
+...+.++++.++|.++++.. ++.|..|+.+ .+. ....+......+..+.+.+++.++++...+ +.|..+|.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~ 132 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTA 132 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTT-----TEEEEECT
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCC-----CeEEEECC
Confidence 346789999999999887776 7889999877 332 233332344667888888888777776544 88999997
Q ss_pred CCCCEEEEEE---ccCceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
. ++.. .+. ....+.++++.+++.+.+ . ++.|..||. +++... +...........+..++++.+.++ ...
T Consensus 133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~-~~~ 207 (300)
T 2qc5_A 133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV-EIM 207 (300)
T ss_dssp T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE-ccC
Confidence 6 6554 332 346788999999887666 2 678999998 555443 332222234566777777766654 334
Q ss_pred cCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977 196 RGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (415)
.+.|.+++..+..... +..+...+.+++++++|++.++...++. |..||. +++.. .+........+.+++++++|+
T Consensus 208 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~ 284 (300)
T 2qc5_A 208 GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGS 284 (300)
T ss_dssp TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTSC
T ss_pred CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCCC
Confidence 6678877765443332 2234566889999999997776666788 999998 55543 333221334688999999998
Q ss_pred EEEEEeCCCeEEEEEce
Q 014977 275 WLAVASDKGTVHIFSLR 291 (415)
Q Consensus 275 ~l~s~s~dg~i~vwd~~ 291 (415)
+.++.. . .|..++.+
T Consensus 285 l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 285 VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECS-S-EEEEEEEC
T ss_pred EEEEcc-C-ceEEeCCC
Confidence 665544 4 67777653
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=5.4e-09 Score=95.29 Aligned_cols=189 Identities=9% Similarity=-0.097 Sum_probs=123.8
Q ss_pred EEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEE
Q 014977 91 VEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQI 168 (415)
Q Consensus 91 ~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~ 168 (415)
....|+++ +.++++...+ +.|..||..+++. ..+.....+.++.+++++.+++ .+..|++||..+++.....
T Consensus 52 egp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred cCCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEe
Confidence 34567774 4555555444 8999999877654 3455667899999999998877 6677999999877654322
Q ss_pred ecc--CCCcceEEEecCCCceEEEEeCC-----ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcE
Q 014977 169 ETL--ANLRGLCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTL 240 (415)
Q Consensus 169 ~~~--~~~~~~~~~~~~~~~~~l~~~g~-----~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~ 240 (415)
... .....+..+..++++.+++.+.. ..+.|..++ .+ .+..+..+......++|+|+|+.|+.+. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~- 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNR- 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-
Confidence 211 11124566777888876654321 123454444 43 3333433445567899999998776554 4677
Q ss_pred EEEEECC--CC-cE-----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 241 IRIFNTV--DG-TR-----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 241 I~vwd~~--~~-~~-----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
|.+||+. ++ +. ...+.. ....+..++++++|.+.++...++.|.+|+.
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 9999986 55 31 222221 2345788999999988777767788999987
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=3.4e-10 Score=106.03 Aligned_cols=229 Identities=12% Similarity=0.010 Sum_probs=150.4
Q ss_pred CCCCEEEEEe--C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCCCeEE
Q 014977 54 QDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVI 117 (415)
Q Consensus 54 p~g~~la~g~--d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~~~i~ 117 (415)
++++.+++.. + +.|.++|..+.+.+..... +... .+.+++++..+..+. .+ +.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--CCCC--ceEECCCCCEEEEEeccccccccCCCC-----CEEE
Confidence 5777777665 3 6899999998777665544 2333 688899886554443 23 7899
Q ss_pred EEECCCCCEEEEEEcc--------CceeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeEEeccCC-------Ccce
Q 014977 118 IWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLAN-------LRGL 177 (415)
Q Consensus 118 vwd~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~~~~~~~-------~~~~ 177 (415)
++|..+++.+.++... .....+.++||++++. . ++.|.+.|+.+++.+..+..... ....
T Consensus 153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~ 232 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF 232 (426)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence 9999999999988743 3456889999998776 2 57899999999998877764211 0001
Q ss_pred EEEecCCCceEEEEeC------------------------------------CccCeEEEEEcCCcceEEE---ec----
Q 014977 178 CCLSHHSSTSVLACPG------------------------------------LQRGQVRIEHFGLNMIKLI---NA---- 214 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g------------------------------------~~dg~v~i~~~~~~~~~~~---~~---- 214 (415)
+.+. +++.+++... ...+.|.+.+.....+..+ ..
T Consensus 233 v~~~--~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 233 YMNC--RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEE--TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEc--CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 1111 1222222111 1233444433322211111 00
Q ss_pred ------CccceEEEEeCCCCCEEEEEeC----------CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEE
Q 014977 215 ------HDSHIACFTLTLDGLLLATAST----------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLA 277 (415)
Q Consensus 215 ------~~~~i~~l~~sp~g~~l~s~s~----------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~ 277 (415)
.......++++|+++.+++... .+. |.++|+.+.+.+..+..+ ....++.|+|||+ +++
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~ly 386 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLY 386 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEE
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEE
Confidence 0011123688999887776642 346 999999999999999752 3588999999999 888
Q ss_pred EEe-CCCeEEEEEceecccCC
Q 014977 278 VAS-DKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 278 s~s-~dg~i~vwd~~~~~~~~ 297 (415)
+.. .++.|.|+|+.+++...
T Consensus 387 v~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp EEETTTTEEEEEETTTCCEEE
T ss_pred EEcCCCCeEEEEECCCCCEEE
Confidence 887 58999999999988653
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=2.4e-10 Score=115.27 Aligned_cols=242 Identities=10% Similarity=0.041 Sum_probs=151.0
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe--C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ---- 110 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~--d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---- 110 (415)
.+|...+..++|||||++||.+. . ..|++||+++++.... .+ .......+.|+ |+..|+....+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL--KDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE--EEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc--CCceeccEEEe-CCCEEEEEEecCccccc
Confidence 44677899999999999999654 2 3589999998664322 22 11112345677 6644444333210
Q ss_pred ----CCCCeEEEEECCCCCE--EEEEEc----cCceeEEEEcCCeEEEE---e----CCeEEEEEcCCce-eeeEEeccC
Q 014977 111 ----YPPTKVIIWDDHQSRC--IGEFAF----RSDVRSVKLSRDRIVVV---L----EHKIYVYSFVDLK-LLHQIETLA 172 (415)
Q Consensus 111 ----~~~~~i~vwd~~~~~~--~~~~~~----~~~i~~l~~~~~~~~~~---~----d~~i~iwd~~~~~-~~~~~~~~~ 172 (415)
.....|++|++.+++. ...+.. ...+..+.++||+++++ . .+.|+++|+.++. ....+..+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 1235699999887653 333332 23467899999999886 1 2589999997763 344454444
Q ss_pred CCcceEEEecCCCceEEEEeCCcc---CeEEEEEcCCcc---eEEEecCccceEEEEeCCCCCEEEEEeCCC---cEEEE
Q 014977 173 NLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRI 243 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~v 243 (415)
.... ..+.++++ .+++. ...+ +.|..++..... .+.+..|...+. .|+++++.|+....++ . |++
T Consensus 281 ~~~~-~~~~~~g~-~l~~~-t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~ 354 (693)
T 3iuj_A 281 DADV-SLVDNKGS-TLYLL-TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQ 354 (693)
T ss_dssp SSCE-EEEEEETT-EEEEE-ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEE
T ss_pred CceE-EEEeccCC-EEEEE-ECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEE
Confidence 3222 22444433 33333 3333 567767765533 356666766665 8899998877665544 5 889
Q ss_pred EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC----CeEEEEEceecc
Q 014977 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRV 294 (415)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~ 294 (415)
||+. +.....+... ..+.+..+.+++++..|+....+ ++|+.||+.+++
T Consensus 355 ~d~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 355 FDYE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECTT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EECC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9986 4444555432 34567888889988877665544 789999987765
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.30 E-value=8.6e-09 Score=95.64 Aligned_cols=232 Identities=6% Similarity=-0.120 Sum_probs=141.1
Q ss_pred EeCCCCEEEEEe---CC---cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-----CCCCCCeEEEEE
Q 014977 52 WNQDYGCFAAGT---SC---GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-----SQYPPTKVIIWD 120 (415)
Q Consensus 52 ~sp~g~~la~g~---d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~~~~~~i~vwd 120 (415)
..|+++++.+.. .+ .|.+||..+++.+.. +..+.. . .+.++|++..+..+... ....++.|.+||
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~--i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--VNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE--ecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 346777665543 11 789999988665433 323333 3 88899998766655420 000127899999
Q ss_pred CCCCCEEEEEEcc--------CceeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCc
Q 014977 121 DHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSST 186 (415)
Q Consensus 121 ~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (415)
..+.+.+..+... .....+.++|||+++. . ++.|.++| .+++.+.. +.... ...+.+.+..
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~ 178 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPS 178 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCc
Confidence 9999888877632 3456899999998877 2 47899999 99988877 54322 2334444444
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEEe-----cCccce-EEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecC
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI-ACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRG 258 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~ 258 (415)
.+++ .+.||.+.+++..++...... ....++ ....+.+++..++..+..+. +.+.|+..+. .+..+...
T Consensus 179 ~~~~--~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 179 TFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDAL 255 (373)
T ss_pred eEEE--EcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeec
Confidence 4443 335777776555444432221 111221 23456666655444456777 9999987653 22222210
Q ss_pred --------CCcccEEEEEeCCCCCEEEEEeC----------CCeEEEEEceeccc
Q 014977 259 --------VDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVV 295 (415)
Q Consensus 259 --------~~~~~v~~l~~spdg~~l~s~s~----------dg~i~vwd~~~~~~ 295 (415)
........+.++||++.|+++.. .+.|.++|+.+++.
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 01123445788999998887654 35799999888774
No 213
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.28 E-value=4.3e-09 Score=97.65 Aligned_cols=227 Identities=12% Similarity=0.092 Sum_probs=147.4
Q ss_pred CCCCEEEEEe--CCcEEEEEccCC--ceeEEEecc-------CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 54 QDYGCFAAGT--SCGFRIYNCEPF--KETFRRDLK-------SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 54 p~g~~la~g~--d~~v~iw~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
+++++|++.+ ++.|.|+|+.+. +......+. .+......+...|++.++...+.......+.|.++|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 8899988877 899999999743 323333331 12224455666788844433222111133789999999
Q ss_pred CCCEEEEEEcc----CceeEEEEcCCeEEEE-e---------------------CCeEEEEEcCCceeeeEEeccCCCcc
Q 014977 123 QSRCIGEFAFR----SDVRSVKLSRDRIVVV-L---------------------EHKIYVYSFVDLKLLHQIETLANLRG 176 (415)
Q Consensus 123 ~~~~~~~~~~~----~~i~~l~~~~~~~~~~-~---------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 176 (415)
+++.+.++... ..-..+.|+|+++.++ . +.+|.+||+.+++.+.++........
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 99999988722 2244688899988776 3 58999999999988888876422112
Q ss_pred e--EEEecCCCceEEEEeCC-----ccCeEEEEEcCCcc---eEEE--ecC----------------ccceEEEEeCCCC
Q 014977 177 L--CCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNM---IKLI--NAH----------------DSHIACFTLTLDG 228 (415)
Q Consensus 177 ~--~~~~~~~~~~~l~~~g~-----~dg~v~i~~~~~~~---~~~~--~~~----------------~~~i~~l~~sp~g 228 (415)
. +.+.++|+++++.+++. .+++|.+|..+... .+.+ ... ......|.+++||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 2 34566888877766555 66778764333221 1111 110 1346789999999
Q ss_pred CEEEEEeCCCcEEEEEECCC---CcEEEEEecCCC------------cccEEEEEeCCCCCEEEEEe
Q 014977 229 LLLATASTRGTLIRIFNTVD---GTRLQEVRRGVD------------RAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~s~s 280 (415)
++|.++......|.+||+.. .+.+..+..+.. .+....++++|||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99988876443399999853 355555554211 01357899999999999888
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=3e-09 Score=95.95 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=149.5
Q ss_pred CCccCCCCCCceEEEEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977 36 QTAFSDVDEIELISVSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (415)
Q Consensus 36 ~~~~~~~h~~~V~~l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~ 113 (415)
................|+|+|+. ++++. ++.|..|+... +. .. +......+..+.+++++.++++...+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~-~~--~~~~~~~~~gl~~d~dG~l~v~~~~~----- 106 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV-DV--LLDATAFTNGNAVDAQQRLVHCEHGR----- 106 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE-EE--EEESCSCEEEEEECTTSCEEEEETTT-----
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE-EE--EeCCCCccceeeECCCCCEEEEECCC-----
Confidence 33444555667789999999994 45555 88899998743 32 21 21344557788899999887776554
Q ss_pred CeEEEEECCCCCEEEEEEc-----cCceeEEEEcCCeEEEEeC--------------------CeEEEEEcCCceeeeEE
Q 014977 114 TKVIIWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE--------------------HKIYVYSFVDLKLLHQI 168 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~d--------------------~~i~iwd~~~~~~~~~~ 168 (415)
+.|.+|+.. ++....... ...+.++.+.++|.+.+.| +.|+.||..+++.....
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 789999975 654332221 2346789999999888732 46788887666554333
Q ss_pred eccCCCcceEEEecCCCceEEEEeCCc-----cCeEEEEEcCCcceE---EE-ecCccceEEEEeCCCCCEEEEEeCCCc
Q 014977 169 ETLANLRGLCCLSHHSSTSVLACPGLQ-----RGQVRIEHFGLNMIK---LI-NAHDSHIACFTLTLDGLLLATASTRGT 239 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~-----dg~v~i~~~~~~~~~---~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (415)
... ....+.+++++..|+++... .+.|.+++.....+. .+ .........++++++|++.+ +. .+.
T Consensus 186 --~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~g 259 (305)
T 3dr2_A 186 --DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-GTG 259 (305)
T ss_dssp --EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-SSE
T ss_pred --cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-CCc
Confidence 222 33455666677656554433 267777665432221 11 11234456789999999544 44 345
Q ss_pred EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
|.+|+. +++.+..+... . .+..++|+++++.|..++.++ ++.++
T Consensus 260 -v~~~~~-~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 260 -VCVFDS-DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -EEEECT-TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -EEEECC-CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 999997 68888787752 2 588999999999898888765 44444
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=7e-09 Score=95.23 Aligned_cols=236 Identities=7% Similarity=-0.026 Sum_probs=148.2
Q ss_pred CceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEE-----eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 45 IELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRR-----DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
..+..++++++|+++++.. ++.++||.++. ...... ....+-..+..+.+++++.+++............|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999998864 34367777763 322211 01123457888999998877665422000001789
Q ss_pred EEEECCCCCEEEEEEcc-------CceeEEEEcCC-eEEEE--e----CCeEEEEEcCCceeeeEEeccCC---------
Q 014977 117 IIWDDHQSRCIGEFAFR-------SDVRSVKLSRD-RIVVV--L----EHKIYVYSFVDLKLLHQIETLAN--------- 173 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~-------~~i~~l~~~~~-~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~--------- 173 (415)
.+||+.+++.+..+... ..+..++++++ +...+ . ++.|.+||+.+++....+..|..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999988777632 34689999974 44444 2 46899999988776554433110
Q ss_pred ------------------CcceEEEecCCCceEEEEeCCccCeEEEEEcC---C-c-----ce--EEEecCccceEEEEe
Q 014977 174 ------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG---L-N-----MI--KLINAHDSHIACFTL 224 (415)
Q Consensus 174 ------------------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~---~-~-----~~--~~~~~~~~~i~~l~~ 224 (415)
......+++++++..|+++......+...+.. . . .. ....++......+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 01234566666776665543333344433221 0 0 00 012234445678999
Q ss_pred CCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
+++|.++++...++. |.+||..+++........ ....+.+++|.++++++++.+..+
T Consensus 256 d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSA-IGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CTTCCEEEEEGGGTE-EEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEECCGG
T ss_pred CCCCCEEEEccCCCe-EEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEeCccc
Confidence 999999888888888 999998567644333321 234689999999998888776544
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=2.3e-08 Score=93.98 Aligned_cols=193 Identities=8% Similarity=0.007 Sum_probs=125.2
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCC--eEEEEEcCCce
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEH--KIYVYSFVDLK 163 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~--~i~iwd~~~~~ 163 (415)
....+++++++.++++...+ +.|++||..+++............ ++|++++..++ .++ .|++|+...+.
T Consensus 132 ~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46778888988888887665 899999988877665555433444 99999987555 223 89999986654
Q ss_pred eeeEE---ec-cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCCcceEEEe-----cCccce--EEEEeCCC-CCE
Q 014977 164 LLHQI---ET-LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI--ACFTLTLD-GLL 230 (415)
Q Consensus 164 ~~~~~---~~-~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~i--~~l~~sp~-g~~ 230 (415)
....+ .. ... ....++.++ ++.++ + +..++.|+.++........+. ++...- ..++|+|+ +.+
T Consensus 206 ~~~~~g~~~~~~~~--~p~~iav~p~~g~ly-v-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 206 APTRIGQLGSTFSG--KIGAVALDETEEWLY-F-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp CEEEEEECCTTSCS--CCCBCEECTTSSEEE-E-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred eeEEeeeccchhcC--CcEEEEEeCCCCeEE-E-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 43333 11 222 233444555 34444 3 345788888887765544441 111222 38999995 555
Q ss_pred EEEEeCCCcEEEEEECCCCcEEEEEecCC-------------CcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceecc
Q 014977 231 LATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV 294 (415)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~ 294 (415)
+++-..++. |+.|+.. ++ +..+.+.. .-.....++++++|+++++-+ .++.|+.|++.+++
T Consensus 282 yv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 555566777 9999874 44 33333311 013478999999999777777 78899999976654
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=8.5e-10 Score=101.94 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=122.4
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc-----------eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK-----------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
.++.+++++...+|++|+...+.+|+++... ...... ... +..+.| ++..|+.+ .+ +
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v~-~~-----~ 106 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLVS-TR-----N 106 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEEE-ES-----S
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEEE-cC-----C
Confidence 6999999999999999996678889976433 112222 233 888888 55555555 54 9
Q ss_pred eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
.|++||+.+........ +...+.++.+.+....++ .||.|.+||+.+++... + .. .+.+++|+++|. +.
T Consensus 107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG~--~v- 177 (388)
T 1xip_A 107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQL--AV- 177 (388)
T ss_dssp EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSEE--EE-
T ss_pred cEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCce--EE-
Confidence 99999988766544444 777888888877653334 79999999998877643 2 12 577888888883 33
Q ss_pred CCccCeEEEEEcCCcc---eEEE------e---cCccceEEEEeCCCCCEEEEE
Q 014977 193 GLQRGQVRIEHFGLNM---IKLI------N---AHDSHIACFTLTLDGLLLATA 234 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~---~~~~------~---~~~~~i~~l~~sp~g~~l~s~ 234 (415)
|..||++++|...+.. ...+ . +|...|.+|.|.+++.+|++-
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 5579999998877766 3445 2 377889999999999988863
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=8.2e-10 Score=102.05 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=120.5
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----------EEEEEEccCceeEEEEcCCeEEEE--eCCeEE
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIY 155 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~ 155 (415)
.+..++.++...++++++. ..+.+|++...+ ......+.. |+.++| ++.+++ .++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASG------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEET------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred cccEEEEcCCCCEEEEeCC------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence 3556777777666666665 577779854322 223445666 999999 555555 899999
Q ss_pred EEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977 156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS 235 (415)
Q Consensus 156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (415)
+||+.+.........+..+ +..+.+.+.. +++ +..||.+.+|+........ +...|.+++|||+| ++.|.
T Consensus 110 v~dv~sl~~~~~~~~~~~~--v~~i~~~~p~--~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKP--VFQLKNVNNT--LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSC--EEEEEECSSE--EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecc--eeeEEecCCC--EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence 9999776655555555443 4455555443 443 4579999999987554433 45689999999999 67899
Q ss_pred CCCcEEEEEECCCCcE--EEEEec-------CCCcccEEEEEeCCCCCEEEEEe
Q 014977 236 TRGTLIRIFNTVDGTR--LQEVRR-------GVDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 236 ~dg~~I~vwd~~~~~~--~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s 280 (415)
.||. +++|+...++. ..++.. ..|...|.++.|.+++.++++-.
T Consensus 180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999 99999877765 556621 01456899999999999988633
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.15 E-value=7.6e-09 Score=95.24 Aligned_cols=230 Identities=11% Similarity=0.025 Sum_probs=143.2
Q ss_pred EEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCC
Q 014977 50 VSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPP 113 (415)
Q Consensus 50 l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~ 113 (415)
....|+++.+.+.. ++.|.++|..+.+.+..... +... .+.++|++..+..+. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~----- 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERT----- 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence 34568898888775 35799999988776555443 3333 388899886554432 23
Q ss_pred CeEEEEECCCCCEEEEEEcc--------CceeEEEEcCCeEEEE---e--CCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQIETLANLRGLCCL 180 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~---~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 180 (415)
+.|.+||..+++.+.++... .....+.++|||+++. . ++.|.++|+.+++.+.++.... +..+
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~ 184 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI 184 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence 68999999999999988732 2567799999998766 2 5789999999999998886432 1222
Q ss_pred ecCCCceEEEEeCCccCeEEEEEcC--CcceEEEecC----ccceE-EEEe-CCCCCEEEEEeCCCcEEEEEECCCCc--
Q 014977 181 SHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAH----DSHIA-CFTL-TLDGLLLATASTRGTLIRIFNTVDGT-- 250 (415)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~----~~~i~-~l~~-sp~g~~l~s~s~dg~~I~vwd~~~~~-- 250 (415)
.+.....+++. +.||.+.+.+.. ++.......+ ..++. ...| .++|++++ .+.+|. |++.|+.++.
T Consensus 185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~ 260 (386)
T 3sjl_D 185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK 260 (386)
T ss_dssp EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence 33333233332 245655553332 2222111111 12221 2355 46886555 555788 9999997654
Q ss_pred EEEEEe--------cCCCcccEEEEEeCCCCCEEEEEeC----------CCeEEEEEceecccC
Q 014977 251 RLQEVR--------RGVDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVVG 296 (415)
Q Consensus 251 ~~~~~~--------~~~~~~~v~~l~~spdg~~l~s~s~----------dg~i~vwd~~~~~~~ 296 (415)
.+..+. .+........++++++++.|+.... .++|.++|+++++..
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 333332 1111223345777999998887653 247999999888743
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=1.9e-08 Score=100.97 Aligned_cols=237 Identities=11% Similarity=0.012 Sum_probs=145.1
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 131 (415)
+..+++++ ++.|..+|.++++.+..............+...| ++.+++..+....-.++.|..||..+|+.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 45677777 9999999999988877765420110000111111 4555554332000023899999999999998876
Q ss_pred cc--C------------------------------ceeEEEEcCCeEEEE---eCC-------------------eEEEE
Q 014977 132 FR--S------------------------------DVRSVKLSRDRIVVV---LEH-------------------KIYVY 157 (415)
Q Consensus 132 ~~--~------------------------------~i~~l~~~~~~~~~~---~d~-------------------~i~iw 157 (415)
.. . ....+.+++++.++. .++ .|..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 0 012467777544444 333 49999
Q ss_pred EcCCceeeeEEeccCCC---------cceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCc-----------
Q 014977 158 SFVDLKLLHQIETLANL---------RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD----------- 216 (415)
Q Consensus 158 d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~----------- 216 (415)
|..+|+.+..++..... .....+..+....-+++.++.+|.+++++.. ++.+.......
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 99999999887653221 1112222222211233347789999996654 44432221100
Q ss_pred ----------------------------cceEEEEeCCCCCEEEEEeC--------------------------------
Q 014977 217 ----------------------------SHIACFTLTLDGLLLATAST-------------------------------- 236 (415)
Q Consensus 217 ----------------------------~~i~~l~~sp~g~~l~s~s~-------------------------------- 236 (415)
..-..++++|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 00113688888887776532
Q ss_pred -------------CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 237 -------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 237 -------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|. |+.||+.+|+.+..+..+ .++..-.+...+.+++.++.||.|+.||.++++..
T Consensus 441 ~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp SSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 367 999999999999888752 22333355567889999999999999999999853
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=2.5e-08 Score=89.91 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=118.5
Q ss_pred CCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-e--CCeEEEEEcC
Q 014977 86 GGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFV 160 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~ 160 (415)
+........|++++. ++++...+ +.|..|+. +++. ..+. ....+..+.+++++++++ . ++.|.+|+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 334455677888775 55565555 89999997 5653 3343 567789999999998877 2 4689999975
Q ss_pred CceeeeEEeccCC--CcceEEEecCCCceEEEEe---CCc-------------cCeEEEEEcCCcceEEEecCccceEEE
Q 014977 161 DLKLLHQIETLAN--LRGLCCLSHHSSTSVLACP---GLQ-------------RGQVRIEHFGLNMIKLINAHDSHIACF 222 (415)
Q Consensus 161 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---g~~-------------dg~v~i~~~~~~~~~~~~~~~~~i~~l 222 (415)
++.......... ......+..++++.++++- |.. .+.|..++.....+..+. .......+
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 543222211110 0123345666777766531 211 234555555333344443 44566889
Q ss_pred EeCCCCCEEEEEeCC------CcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 223 TLTLDGLLLATASTR------GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 223 ~~sp~g~~l~s~s~d------g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+|+|+|+.|+.+... +. |++|++..+.. ...+... .......++++++|++. +++.+| |.+|+.+
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLW-SSSGTG-VCVFDSD 266 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEE-ECCSSE-EEEECTT
T ss_pred EEcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEE-EecCCc-EEEECCC
Confidence 999999988777665 67 99999876541 1122111 22345678999999944 444554 8888863
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.10 E-value=3.9e-09 Score=106.46 Aligned_cols=201 Identities=7% Similarity=0.046 Sum_probs=125.3
Q ss_pred CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC-----------
Q 014977 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE----------- 151 (415)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d----------- 151 (415)
+...+..+.|+||+..++-+.+...-....|++||+.+++.+...........++|+ |++.++ .+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 445677889999998777322110001268999999999976542222224567899 887666 23
Q ss_pred --CeEEEEEcCCcee--eeEEeccC-CCcceEEEecCCCceEEEEeCC---ccCeEEEEEcCCc--ceEEEecCccceEE
Q 014977 152 --HKIYVYSFVDLKL--LHQIETLA-NLRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLN--MIKLINAHDSHIAC 221 (415)
Q Consensus 152 --~~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~--~~~~~~~~~~~i~~ 221 (415)
..|++|++.+... ...+.... .+.....+.+++++++|+++.. ....|++++.... ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 2499999977543 22233222 2334566777888887765432 2347888776543 56667777666655
Q ss_pred EEeCCCCCEEE-EEeCC---CcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEcee
Q 014977 222 FTLTLDGLLLA-TASTR---GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRV 292 (415)
Q Consensus 222 l~~sp~g~~l~-s~s~d---g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~ 292 (415)
. ++++|..|+ ....+ +. |.++|+.++.. ...+.. +...+. .|++++++|+....++ .|++|++..
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred E-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 5 566666554 44433 46 99999987654 234544 333343 8899999887666544 688888774
Q ss_pred c
Q 014977 293 R 293 (415)
Q Consensus 293 ~ 293 (415)
+
T Consensus 360 ~ 360 (693)
T 3iuj_A 360 K 360 (693)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=1.1e-07 Score=88.22 Aligned_cols=219 Identities=10% Similarity=0.031 Sum_probs=132.1
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
+..+.+++ ++.|..+|.++++......+...... ..... ++.+++.. .+ +.|..+|..+|+.+..+....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~--~p~~~-~~~v~v~~-~~-----g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS--RPVVS-DGLVLIHT-SN-----GQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS--CCEEE-TTEEEEEC-TT-----SEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc--CCEEE-CCEEEEEc-CC-----CeEEEEECCCCcEEEEEeCCC
Confidence 44566666 88999999998887776655322111 11122 44444443 33 899999999999998887543
Q ss_pred ce------eEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcc--------e-EEEecCCCceEEEEeCCccC
Q 014977 135 DV------RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRG--------L-CCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 135 ~i------~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~~g~~dg 197 (415)
.+ ...... ++.+++ .++.+..+|..+++.+........... + ...... ++. +.+ ++.++
T Consensus 174 ~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~-v~~-~~~~g 249 (376)
T 3q7m_A 174 PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGV-VFA-LAYNG 249 (376)
T ss_dssp -----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTE-EEE-ECTTS
T ss_pred CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCE-EEE-EecCc
Confidence 33 222333 444454 578999999999988877653321000 0 000011 232 333 44677
Q ss_pred eEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977 198 QVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (415)
Q Consensus 198 ~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (415)
.+..++. +++.+.... ......+.. ++..|+.++.++. |..+|..+|+.+...... ....+..... .+..|
T Consensus 250 ~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~l 321 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGNL 321 (376)
T ss_dssp CEEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTEE
T ss_pred EEEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECCEE
Confidence 7777665 455444433 222334443 3567888888999 999999999988776521 1112222222 35678
Q ss_pred EEEeCCCeEEEEEceeccc
Q 014977 277 AVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 277 ~s~s~dg~i~vwd~~~~~~ 295 (415)
+.++.+|.|+++|.++++.
T Consensus 322 ~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 8899999999999988874
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=2.6e-08 Score=99.83 Aligned_cols=235 Identities=10% Similarity=0.003 Sum_probs=148.2
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEecc-CCC--eeEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLK-SGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF 130 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~ 130 (415)
+..+++++ ++.+..+|..+++.+...... ... ..+. ..... ++.+++.......-.++.|..+|..+|+.+..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 45677777 999999999998888776652 100 1111 11112 445555443200001389999999999999988
Q ss_pred EccCce---------------------------------eEEEEcCCeEEEE---eC-------------------CeEE
Q 014977 131 AFRSDV---------------------------------RSVKLSRDRIVVV---LE-------------------HKIY 155 (415)
Q Consensus 131 ~~~~~i---------------------------------~~l~~~~~~~~~~---~d-------------------~~i~ 155 (415)
...... ..+.+++++..+. .+ +.|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 731111 2467777654444 22 2599
Q ss_pred EEEcCCceeeeEEeccCCC---------cceEEEecCCCc-eEEEEeCCccCeEEEEEc-CCcceEEEecCc--------
Q 014977 156 VYSFVDLKLLHQIETLANL---------RGLCCLSHHSST-SVLACPGLQRGQVRIEHF-GLNMIKLINAHD-------- 216 (415)
Q Consensus 156 iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~-------- 216 (415)
.+|..+++.+..++...+. ..+.....+... ..++ .++.+|.+++++. +++.+..+....
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~-~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL-HAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE-ECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEE-EECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999998887653221 112222222211 3444 4778999999665 455554443211
Q ss_pred ---cce------------------------EEEEeCCCCCEEEEEeCC--------------------------------
Q 014977 217 ---SHI------------------------ACFTLTLDGLLLATASTR-------------------------------- 237 (415)
Q Consensus 217 ---~~i------------------------~~l~~sp~g~~l~s~s~d-------------------------------- 237 (415)
.++ ..++++|++.++++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 011 156889988888775431
Q ss_pred -----------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 238 -----------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 238 -----------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+. |..||+.+++.+..+.. ..++....+..++.+++.++.||.+++||.++++..
T Consensus 446 ~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 446 FNAEPPKSKPFGR-LLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp ECSSCCCSCCEEE-EEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccCCCCCccE-EEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 67 99999999999888874 233445556677888899999999999999999854
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=7.2e-09 Score=94.22 Aligned_cols=219 Identities=13% Similarity=0.009 Sum_probs=133.1
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
.+.++...++|. |.+++++ +..||. +.+....... ........... ++.++++.. + +.|..+|.. ++
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~-l~~~d~-~g~~~~~~~~--~~~~~~~~~~~-~~~l~v~t~-~-----~~l~~~d~~-g~ 127 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK-VYAINP-DGTEKWRFDT--KKAIVSDFTIF-EDILYVTSM-D-----GHLYAINTD-GT 127 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE-TTEEEEECT-T-----SEEEEECTT-SC
T ss_pred cccceEEecCCc-EEEecCc-EEEECC-CCcEEEEEEC--CCCcccCceEE-CCEEEEEec-C-----CEEEEEcCC-CC
Confidence 345666666665 4445544 777775 3232222111 11111111222 555555433 3 889999988 88
Q ss_pred EEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977 126 CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202 (415)
Q Consensus 126 ~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~ 202 (415)
...... ....+.++...+++.+.+ .++.|..+|.. ++.+..+...... +..+..+.++.+.+. + +.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~d~~g~l~v~--t--~~l~~~ 200 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAI--TSAASIGKDGTIYFG--S--DKVYAI 200 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCC--CSCCEECTTCCEEEE--S--SSEEEE
T ss_pred EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCc--eeeeEEcCCCEEEEE--e--CEEEEE
Confidence 777766 444566777887777766 46899999988 7777666544432 233444455555543 3 566666
Q ss_pred EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
+.+++...........+.++...++|. |..++.++. |..+| .+++.+..+.. ....+..+.+.+++. |..++.+
T Consensus 201 d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~ 274 (330)
T 3hxj_A 201 NPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAIN-PDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYD 274 (330)
T ss_dssp CTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEEC-TTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTT
T ss_pred CCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEEC-CCCCEeEEeeC--CCCccccceEcCCCe-EEEecCC
Confidence 666666666665666788888888886 455666777 88887 46777766664 222334455665664 6678888
Q ss_pred CeEEEEEc
Q 014977 283 GTVHIFSL 290 (415)
Q Consensus 283 g~i~vwd~ 290 (415)
|.|..+|.
T Consensus 275 ggl~~~d~ 282 (330)
T 3hxj_A 275 GHLYAINP 282 (330)
T ss_dssp CEEEEECT
T ss_pred CCEEEECC
Confidence 88998884
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=1.6e-08 Score=93.01 Aligned_cols=213 Identities=7% Similarity=-0.067 Sum_probs=131.6
Q ss_pred cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCCCeEEEEECCCCCEEEEEEcc--
Q 014977 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVIIWDDHQSRCIGEFAFR-- 133 (415)
Q Consensus 66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~~~i~vwd~~~~~~~~~~~~~-- 133 (415)
.|.++|.++.+.+-.... +... .+.+++++..+..+. .+ +.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~v--G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG--AFLS--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEE--CTTC--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeC--CCCC--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCCc
Confidence 788999998777665544 2223 688898875554443 23 78999999999999998743
Q ss_pred ------CceeEEEEcCCeEEEE--e---CCeEEE--EEcCCceeeeEEeccCCCcce------EEEecCCCc--------
Q 014977 134 ------SDVRSVKLSRDRIVVV--L---EHKIYV--YSFVDLKLLHQIETLANLRGL------CCLSHHSST-------- 186 (415)
Q Consensus 134 ------~~i~~l~~~~~~~~~~--~---d~~i~i--wd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------- 186 (415)
.....+.++|||+++. . +..+.+ +|+.+ +..+..... ..+ .-+...+++
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 3467899999998776 2 457888 88765 233321100 000 000111111
Q ss_pred -----------------------------eEEEEeCCccCeEEEEEcCCcceEE---Eec-------Cc---cceEEEEe
Q 014977 187 -----------------------------SVLACPGLQRGQVRIEHFGLNMIKL---INA-------HD---SHIACFTL 224 (415)
Q Consensus 187 -----------------------------~~l~~~g~~dg~v~i~~~~~~~~~~---~~~-------~~---~~i~~l~~ 224 (415)
..++++. . +.|.+.+........ +.. +. .....+++
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 1112212 1 444443332211111 100 00 11122689
Q ss_pred CCCCCEEEEEeC-C--------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE-EEEEe-CCCeEEEEEceec
Q 014977 225 TLDGLLLATAST-R--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW-LAVAS-DKGTVHIFSLRVR 293 (415)
Q Consensus 225 sp~g~~l~s~s~-d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s-~dg~i~vwd~~~~ 293 (415)
+|+|+.++.+.. + +. +.++|+.+++.+..+..+ .....|+|+|||++ +++.. .+++|.++|+.++
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred cCCCCEEEEEeccccCcccccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 999998876543 2 35 679999999999888753 36889999999984 55666 5899999999998
Q ss_pred ccCC
Q 014977 294 VVGE 297 (415)
Q Consensus 294 ~~~~ 297 (415)
+...
T Consensus 348 kvv~ 351 (368)
T 1mda_H 348 QDQS 351 (368)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 8654
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=2.9e-07 Score=85.35 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=135.3
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCC-------CeeE-EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG-------GFRI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
+..+.+++ ++.|..+|.++++......+... ...+ ...... ++.+++... + +.|..+|..+|+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~-~-----g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GGHVYIGSE-K-----AQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-TTEEEEEET-T-----SEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-CCEEEEEcC-C-----CEEEEEECCCCCE
Confidence 45666677 88999999998887776655221 1222 223333 444444433 3 8999999999999
Q ss_pred EEEEEccCcee-EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc-----ceEEEecCCCceEEEEeCCccCe
Q 014977 127 IGEFAFRSDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR-----GLCCLSHHSSTSVLACPGLQRGQ 198 (415)
Q Consensus 127 ~~~~~~~~~i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~dg~ 198 (415)
+........+. ...+. ++.+++ .++.|+.+|..+++.+..+....... ....+. ++ .+++ +..++.
T Consensus 126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~-~v~~-g~~~g~ 199 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG-AAVV-GGDNGR 199 (376)
T ss_dssp EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT-EEEE-CCTTTE
T ss_pred EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC-EEEE-EcCCCE
Confidence 98887443332 22333 444444 68899999999999887776533211 111111 23 3333 667888
Q ss_pred EEEEEc-CCcceEEEecCccc----eE---EEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977 199 VRIEHF-GLNMIKLINAHDSH----IA---CFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (415)
Q Consensus 199 v~i~~~-~~~~~~~~~~~~~~----i~---~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (415)
+..++. +++.+......... +. .+...| .+..++.++.++. +..+|..+|+.+...... ....+.
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~~----~~~~~~ 274 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKRELG----SVNDFI 274 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECCC----CEEEEE
T ss_pred EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccCC----CCCCce
Confidence 887665 45555444322110 00 011111 2456777888999 999999999988776532 233444
Q ss_pred eCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 269 LSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 269 ~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
. ++..|+.++.++.|..+|.++++.
T Consensus 275 ~--~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 275 V--DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp E--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred E--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 3 466788888899999999988874
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=1.8e-06 Score=80.22 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=122.5
Q ss_pred CCe-EEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE--------ccCceeEEEEcCCeEEEE--eC------CeEE
Q 014977 97 CNI-LALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA--------FRSDVRSVKLSRDRIVVV--LE------HKIY 155 (415)
Q Consensus 97 ~~~-~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--------~~~~i~~l~~~~~~~~~~--~d------~~i~ 155 (415)
.+. .+++.+..+ +.|.|+|+.+. +.++.++ .......+...|+|.++. .+ +.|.
T Consensus 93 ~~r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence 444 455566655 99999998765 6666663 112456788899994444 23 6899
Q ss_pred EEEcCCceeeeEEeccCCCc-ceEEEecCCCceEEEEeC------------------CccCeEEEEEcCCc-ceEEEecC
Q 014977 156 VYSFVDLKLLHQIETLANLR-GLCCLSHHSSTSVLACPG------------------LQRGQVRIEHFGLN-MIKLINAH 215 (415)
Q Consensus 156 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g------------------~~dg~v~i~~~~~~-~~~~~~~~ 215 (415)
++|..+++.+..+.....+. ....+.+++++..++++. ....+|.+|+.... .+..+...
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 99999999998886443221 222344455666776642 13678999887653 34455442
Q ss_pred --ccceEEEEe--CCCCCEEEEEeC-----C-CcEEEEEECCCCcE--EEEEecCCC----------------cccEEEE
Q 014977 216 --DSHIACFTL--TLDGLLLATAST-----R-GTLIRIFNTVDGTR--LQEVRRGVD----------------RAEIYSI 267 (415)
Q Consensus 216 --~~~i~~l~~--sp~g~~l~s~s~-----d-g~~I~vwd~~~~~~--~~~~~~~~~----------------~~~v~~l 267 (415)
......+.| +|+|++++++++ . +. |.+|....++. ...+..... ......|
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 123345555 999999888775 4 45 88776655432 222211000 1346789
Q ss_pred EeCCCCCEEEEEeC-CCeEEEEEceec
Q 014977 268 ALSPNVQWLAVASD-KGTVHIFSLRVR 293 (415)
Q Consensus 268 ~~spdg~~l~s~s~-dg~i~vwd~~~~ 293 (415)
.+|+||++|.++.. .+.|.+||+...
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999999987765 679999999744
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=2.1e-06 Score=74.84 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=135.8
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC--ceeEEEEcCCeEEEE--eCCeEEEEEcCCce
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLK 163 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~ 163 (415)
.....+.+++++.++++.+.. ..+.|.++|+.+++.+..+.... ....+++..+..+++ .++.+.++|..+++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CCEEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE
T ss_pred CCcccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc
Confidence 345677888877777765531 12899999999999999887433 334567776655555 58999999999999
Q ss_pred eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCc--c---ceEEEEeCCCCCEEEEEeCC
Q 014977 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD--S---HIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~--~---~i~~l~~sp~g~~l~s~s~d 237 (415)
.+.++... .+ ....+++++.. ++++. .++.|.+.+.. .+.+..+.... . .++.+.|. +|++.+....+
T Consensus 98 v~~~i~~g-~~-~g~glt~Dg~~--l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 98 NIKNFTHQ-MK-DGWGLATDGKI--LYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp EEEEEECC-SS-SCCEEEECSSS--EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECC-CC-CeEEEEECCCE--EEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 99988654 12 23456666433 33333 46788886544 45555555322 1 35678887 77655555456
Q ss_pred CcEEEEEECCCCcEEEEEecCCC-----------cccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecc
Q 014977 238 GTLIRIFNTVDGTRLQEVRRGVD-----------RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRV 294 (415)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~-----------~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~ 294 (415)
+. |.+.|..+++.+..+..... ......|+|+|+++.|+ ++...+.|.+.++....
T Consensus 172 ~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 172 DC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp SE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred Ce-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 77 99999999999998874200 12568999999987554 56677889999988764
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.90 E-value=1.1e-07 Score=91.45 Aligned_cols=233 Identities=8% Similarity=-0.007 Sum_probs=149.7
Q ss_pred CCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEee-e-CCeEEEEecCCC-------------CCCCCCeE
Q 014977 54 QDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF-R-CNILALVGAGDN-------------SQYPPTKV 116 (415)
Q Consensus 54 p~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~s~~~d-------------~~~~~~~i 116 (415)
+||++|.+.. ++.|.+.|+++.+......+... .....+.+ . |++.++..++.. +...++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899998877 67799999998775554445322 33455555 3 665554444211 01123689
Q ss_pred EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e--C--------------C-----------------------eEE
Q 014977 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--E--------------H-----------------------KIY 155 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~--d--------------~-----------------------~i~ 155 (415)
.+.|.++.+.+.++.-.+....++++|+|++++ . . . .|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999999999988655677888999887776 1 1 1 255
Q ss_pred EEEcCC--cee-eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-------------eEEEecCccce
Q 014977 156 VYSFVD--LKL-LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-------------IKLINAHDSHI 219 (415)
Q Consensus 156 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-------------~~~~~~~~~~i 219 (415)
|.|..+ ++. +..+.... ....+.++|+++++++++..+.+|.+++..... +..+. -....
T Consensus 258 VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP 333 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP 333 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred EEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence 555555 333 33443322 233455667788888888889999997776431 22222 23456
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEECCC----------CcEEEEEecCCCcccE---EEEEeCCCCCEEEEEeC---CC
Q 014977 220 ACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTRLQEVRRGVDRAEI---YSIALSPNVQWLAVASD---KG 283 (415)
Q Consensus 220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~~~~~~~~~~~~~v---~~l~~spdg~~l~s~s~---dg 283 (415)
..++|+|+|....+.-.|+. |.+||+.+ .+.+.++..+...+.. .++.++|||++|+++.. |.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 78999999944445566777 99999977 5677777763221111 12356899999998754 33
Q ss_pred eE-----------EEEEceec
Q 014977 284 TV-----------HIFSLRVR 293 (415)
Q Consensus 284 ~i-----------~vwd~~~~ 293 (415)
+ .++|+..+
T Consensus 413 -~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 413 -FLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp -SCCCCSSCCEEEEEEECSSS
T ss_pred -cccCCCCCCCcceEEEcCCC
Confidence 3 88998443
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=8e-07 Score=89.03 Aligned_cols=225 Identities=8% Similarity=0.034 Sum_probs=131.8
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCC---------eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---------FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+..+++++ ++.|.-+|..+++.+.+....... .....+... ++.+++. ..+ +.|..+|..+|+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~v~v~-~~d-----g~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVG-AWD-----GRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence 34555556 888999999988888776552211 001112222 3344443 333 899999999999
Q ss_pred EEEEEEcc------CceeE-EEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccCCCc---------------
Q 014977 126 CIGEFAFR------SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLR--------------- 175 (415)
Q Consensus 126 ~~~~~~~~------~~i~~-l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~~~~--------------- 175 (415)
.+..+... ..+.. ..+. ++.+++ . ++.|+.||..+++.+..+.......
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred EEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 99988743 12221 1222 455555 2 6899999999999988776432210
Q ss_pred ---------------ceEEEecCCCceEEEEeCCccC-------------------eEEEEEc-CCcceEEEec--Cc--
Q 014977 176 ---------------GLCCLSHHSSTSVLACPGLQRG-------------------QVRIEHF-GLNMIKLINA--HD-- 216 (415)
Q Consensus 176 ---------------~~~~~~~~~~~~~l~~~g~~dg-------------------~v~i~~~-~~~~~~~~~~--~~-- 216 (415)
....++.++++..+++ +..++ .|..++. +++.+..++. |.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 0012333444444443 33332 3555443 4555555543 21
Q ss_pred -----cceEEEEeCCCC---CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc---------ccE---------------
Q 014977 217 -----SHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR---------AEI--------------- 264 (415)
Q Consensus 217 -----~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~---------~~v--------------- 264 (415)
.....+....+| ..|+.++.+|. |+++|..+|+.+..+...... .++
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 112222333477 67899999999 999999999998877632100 011
Q ss_pred ---------EEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 265 ---------YSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 265 ---------~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
..++|+|++.++++...+-...++..
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 14678898888888776544444443
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=2e-06 Score=74.08 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=129.2
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCce--eEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV 160 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i--~~l~~~~~~~~~~--~d~~i~iwd~~ 160 (415)
........+.|+ ++.++.+.+.+ ..+.|+++|+++++.+..+...... ..+.+..+..+++ .++.+.+||..
T Consensus 40 d~~~ftqGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 40 DTKAFTEGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp CTTCEEEEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCcccceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 334445667787 45666666654 1138999999999999998855554 3467766766666 59999999999
Q ss_pred CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecC--c---cceEEEEeCCCCCEEEEE
Q 014977 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAH--D---SHIACFTLTLDGLLLATA 234 (415)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~--~---~~i~~l~~sp~g~~l~s~ 234 (415)
+.+.+.++..... ...++++. ..|+.+. .++.|.+.+.. .+.+..+... . ..++.+.|. +|++.+..
T Consensus 116 t~~~~~ti~~~~e---G~glt~dg--~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 116 NLRQVRSFNYDGE---GWGLTHND--QYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp TCCEEEEEECSSC---CCCEEECS--SCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cCcEEEEEECCCC---ceEEecCC--CEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 9999999976443 23444543 3444433 35678875544 5556655542 2 234557776 77655555
Q ss_pred eCCCcEEEEEECCCCcEEEEEecCCC----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
-.++. |.+.|.++|+.+..+....- ....+.|+|+|+++.|++.+..= =++|.++
T Consensus 189 w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev~ 253 (262)
T 3nol_A 189 WQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEIT 253 (262)
T ss_dssp TTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred ccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEEE
Confidence 55677 99999999999988875211 13568999999988777666432 3445544
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=5.7e-06 Score=72.69 Aligned_cols=217 Identities=7% Similarity=-0.087 Sum_probs=132.6
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
..+..++|++++..|..+. .+.|.+++.+...... .+.........++++++ +.++++.... +.|.++++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAKM 108 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEECCCCCccEEEEEecCCeEEEEECCC-----CEEEEEEc
Confidence 3567999999877666666 7889999987643221 12122345677888874 5666665544 89999997
Q ss_pred CCCCEEEEEEc-cCceeEEEEcCC-eEEEE-e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 122 HQSRCIGEFAF-RSDVRSVKLSRD-RIVVV-L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 122 ~~~~~~~~~~~-~~~i~~l~~~~~-~~~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
........... ......++++|+ +.+.+ . .+.|..+++.. +....+.. ........++.++++..|.++..
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC-TTCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE-CCCCCCcEEEEcCCCCEEEEEEC
Confidence 64433222222 256789999994 55444 2 36888888753 33333321 11123455666665445555555
Q ss_pred ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 195 ~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
..+.|...+..+.....+.........++.. +..|+.+. ..+. |.++|..+++.+..+..+ .......+++.|++
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g-~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIALSQ 262 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEECSC
T ss_pred CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe-EEEEeCCCCCceEEEccc-cccccceeeecCcc
Confidence 6778888777665444333223334566654 44555555 4567 999999999998888753 11246778888876
Q ss_pred C
Q 014977 274 Q 274 (415)
Q Consensus 274 ~ 274 (415)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=3.5e-06 Score=74.02 Aligned_cols=228 Identities=9% Similarity=-0.029 Sum_probs=133.3
Q ss_pred CCEEEEEeCCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977 56 YGCFAAGTSCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 56 g~~la~g~d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 131 (415)
|.+|..+..+.|+.++++..... ....+.........+.+++ ++.++++.... +.|.++++..+.....+.
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEEC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEEE
Confidence 34566666557888888753321 0011111224566788887 45566665544 899999987665433333
Q ss_pred c-cCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc--cCeEEEEEc
Q 014977 132 F-RSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHF 204 (415)
Q Consensus 132 ~-~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~v~i~~~ 204 (415)
. ......++++++ +.+.+ ..+.|.++++............. .....+..++++..|.++... .+.|...+.
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 2 257789999985 44444 46789999986432222222111 234555666533333333322 467777666
Q ss_pred CCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-C
Q 014977 205 GLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-D 281 (415)
Q Consensus 205 ~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~ 281 (415)
++.....+. ..-.....+++++++..|+.+.. .+. |.++|.........+.. ......++.. +..|+.+. .
T Consensus 154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETT
T ss_pred CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECC
Confidence 665554443 33345788999998776665554 456 99999865443333333 1234567664 44455444 5
Q ss_pred CCeEEEEEceecccC
Q 014977 282 KGTVHIFSLRVRVVG 296 (415)
Q Consensus 282 dg~i~vwd~~~~~~~ 296 (415)
.+.|.++|..+++..
T Consensus 228 ~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 228 TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCeEEEEeCCCCCce
Confidence 689999999887654
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=3.5e-07 Score=82.94 Aligned_cols=219 Identities=9% Similarity=-0.022 Sum_probs=143.6
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-cc
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR 133 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~ 133 (415)
+..+.+++ ++.+..++.+ ++....... ....+..+...+++.++++.. + +.|..+|.. ++.+..+. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~~g~l~vgt~-~-----~~l~~~d~~-g~~~~~~~~~~ 176 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVSEDGTIYVGSN-D-----NYLYAINPD-GTEKWRFKTND 176 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEECTTSCEEEECT-T-----SEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEcCCCEEEEEcC-C-----CEEEEECCC-CCEeEEEecCC
Confidence 44566677 8899999987 555444433 222233445565666655543 3 899999988 88877776 35
Q ss_pred CceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977 134 SDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN 213 (415)
Q Consensus 134 ~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~ 213 (415)
..+.++.+.+++.+.+..+.|..+| .+++.+..+..... .+.++..++++.+.+. +.++.+..++.++..+..+.
T Consensus 177 ~~~~~~~~d~~g~l~v~t~~l~~~d-~~g~~~~~~~~~~~--~~~~~~~~~~g~l~v~--t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGSDKVYAIN-PDGTEKWNFYAGYW--TVTRPAISEDGTIYVT--SLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp CCCSCCEECTTCCEEEESSSEEEEC-TTSCEEEEECCSSC--CCSCCEECTTSCEEEE--ETTTEEEEECTTSCEEEEEE
T ss_pred CceeeeEEcCCCEEEEEeCEEEEEC-CCCcEEEEEccCCc--ceeceEECCCCeEEEE--cCCCeEEEECCCCCEeEEee
Confidence 5677788877887777339999999 77777766654433 2334444556555543 34666777676677666666
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.....+..+.+.++|. |..++.++. |..+|. +++.+..+.. ....+.++...++|+ |..++.+|.+++...+..
T Consensus 252 ~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 252 TGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 5555555666766775 666778888 999995 7887777664 344566777777876 556889999998877665
Q ss_pred cc
Q 014977 294 VV 295 (415)
Q Consensus 294 ~~ 295 (415)
++
T Consensus 326 ~~ 327 (330)
T 3hxj_A 326 HH 327 (330)
T ss_dssp --
T ss_pred cc
Confidence 43
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.86 E-value=1.2e-06 Score=88.05 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------e-EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------R-IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+..+++++ ++.|.-+|.++++.+.+........ . ...+... ++.+++.. .+ +.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~-~d-----g~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGV-LD-----GRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEEEEEc-cC-----CEEEEEECCCCC
Confidence 44566666 8889999999988887765422110 0 0111222 33444443 34 999999999999
Q ss_pred EEEEEEcc-C--ceeEEEEcC---CeEEEE-e-------CCeEEEEEcCCceeeeEEeccC-CCc---------------
Q 014977 126 CIGEFAFR-S--DVRSVKLSR---DRIVVV-L-------EHKIYVYSFVDLKLLHQIETLA-NLR--------------- 175 (415)
Q Consensus 126 ~~~~~~~~-~--~i~~l~~~~---~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~-~~~--------------- 175 (415)
.+..+... . ....+...| ++.+++ . ++.|+.||..+|+.+..+.... .+.
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 99888743 1 111111122 555555 2 5899999999999988775311 000
Q ss_pred -------------ceEEEecCCCceEEEEeCCccCe-------------------EEEEEc-CCcceEEEec--Cc----
Q 014977 176 -------------GLCCLSHHSSTSVLACPGLQRGQ-------------------VRIEHF-GLNMIKLINA--HD---- 216 (415)
Q Consensus 176 -------------~~~~~~~~~~~~~l~~~g~~dg~-------------------v~i~~~-~~~~~~~~~~--~~---- 216 (415)
.....+.+++..++++ +..++. |..++. +++.+..++. |.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 0012334444444444 444442 555554 5666666553 21
Q ss_pred ---cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.++.......+|+ .|+.++.+|. ++++|..+|+.+....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKG 346 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEecccc
Confidence 1111222223565 7888999999 9999999999886544
No 237
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.83 E-value=3.4e-05 Score=68.06 Aligned_cols=257 Identities=14% Similarity=0.167 Sum_probs=175.9
Q ss_pred CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCC
Q 014977 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRD 144 (415)
Q Consensus 65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~ 144 (415)
..|.|.|+.......++.. .....+. +|....++--.. ..+.++|+++.+.++.+.....|.--.|-.+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi-~AdsAIM----nP~~~ViALrag------~~LQiFnletK~klks~~~~e~VvfWkWis~ 117 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI-SADSAIM----NPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 117 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC-CCSEEEE----CSSSSEEEEEET------TEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred CEEEEEECCCCCCcccccc-ccceeee----CCCccEEEEecC------CeEEEechHHhhhhcceecCCccEEEEecCC
Confidence 4688889987666666555 3343333 555544443332 8999999999999999998888888888655
Q ss_pred eEE-EEeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeCC------ccCeEEEEEcCCcceEEEec
Q 014977 145 RIV-VVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLINA 214 (415)
Q Consensus 145 ~~~-~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~v~i~~~~~~~~~~~~~ 214 (415)
..+ ++.+..|+-|++.. ..+.+.+..|. ....++.+..+++.++++..|- -.|.+.++..+.+.-+.+++
T Consensus 118 ~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 197 (365)
T 2xzh_A 118 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 197 (365)
T ss_dssp SEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred CeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee
Confidence 544 44999999999964 45666665543 2356788888888888877653 35778889999999999999
Q ss_pred CccceEEEEeCCC---CCEEEEEeC--C-CcEEEEEECCCC---c-----EEEEEe--cCCCcccEEEEEeCCCCCEEEE
Q 014977 215 HDSHIACFTLTLD---GLLLATAST--R-GTLIRIFNTVDG---T-----RLQEVR--RGVDRAEIYSIALSPNVQWLAV 278 (415)
Q Consensus 215 ~~~~i~~l~~sp~---g~~l~s~s~--d-g~~I~vwd~~~~---~-----~~~~~~--~~~~~~~v~~l~~spdg~~l~s 278 (415)
|......+.+.-+ ..+++.+.. . +. ++|-++... . ....+. ......-..++..++.-..+..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-LhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 9877665554322 124444433 2 45 899988432 1 111111 1111234557788888888999
Q ss_pred EeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC
Q 014977 279 ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP 358 (415)
Q Consensus 279 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (415)
.+.-|.|++||++++.+. | .-++.
T Consensus 277 iTK~G~ihlyDleTgt~i----------------------------------------~----------------~nrIS 300 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCI----------------------------------------Y----------------MNRIS 300 (365)
T ss_dssp EETTSEEEEEETTTCCEE----------------------------------------E----------------EEECC
T ss_pred EeCCcEEEEEEcccCcEE----------------------------------------E----------------EeccC
Confidence 999999999999999854 1 23344
Q ss_pred CCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 359 EVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 359 ~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
.+...+.+...+ +-+++....|.|+-..+++
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 455555555444 8899999999888888876
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.81 E-value=4.9e-07 Score=82.84 Aligned_cols=199 Identities=8% Similarity=0.012 Sum_probs=121.9
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--------ccCceeEEEEcCCeEEEE-e-------C
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV-L-------E 151 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~~-~-------d 151 (415)
.....+.+++++.++++.... .++.++||.+.+++. ..+. +-..+.++++++++++.+ . +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 457778889888887774310 113245555445542 2221 235789999999987766 2 3
Q ss_pred CeEEEEEcCCceeeeEEeccCC----CcceEEEecCCCceEEEEeCC---ccCeEEEEEcCCc-ceEEEecC--------
Q 014977 152 HKIYVYSFVDLKLLHQIETLAN----LRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLN-MIKLINAH-------- 215 (415)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~-~~~~~~~~-------- 215 (415)
..|.+||+.+++.+..+..... ......+..++++..+.++.. .++.|.+++.... ..+.+..|
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 7999999999987777654311 012234444443223333344 5678888776533 22222221
Q ss_pred ---------------------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC---CCc--------EEEEEecCCCccc
Q 014977 216 ---------------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTV---DGT--------RLQEVRRGVDRAE 263 (415)
Q Consensus 216 ---------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~---~~~--------~~~~~~~~~~~~~ 263 (415)
...+..|+|+|+|+.|+.+...+..|..++.. .+. .+..+ + +...
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g--~~g~ 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S--EKPI 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E--ECCS
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c--cCCC
Confidence 02357899999999888888776436666532 111 01111 1 2224
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
...++++++|.++++...++.|.+||.+++
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 567999999999999888999999998444
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.81 E-value=7.6e-10 Score=102.75 Aligned_cols=170 Identities=11% Similarity=-0.027 Sum_probs=93.3
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (415)
+.|..||..+|+.+..+.. ..+.+..+..++..++ .|+.|+.||..+++.+..+..+.............++ .++
T Consensus 19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~-~v~ 96 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDG-ILY 96 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CC
T ss_pred CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCC-EEE
Confidence 9999999999999998887 5555555556664444 5899999999888877655432110000000111122 333
Q ss_pred EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977 191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (415)
+|+.++.++.++.. ++.+..+..+. ...++|++..|++++.|+. |+.||.++|+.+..+... ......+
T Consensus 97 -~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~----~~~~~~~ 166 (369)
T 2hz6_A 97 -MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYF----DYAASLP 166 (369)
T ss_dssp -CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCEEEEE----EECCBCC
T ss_pred -EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEeEecc----cccCccc
Confidence 46678889887755 55555555443 2345678888999999999 999999999887666531 1223334
Q ss_pred CCCC---CEEEEEeCCCeEEEEEceeccc
Q 014977 270 SPNV---QWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 270 spdg---~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
+++. ..+++++.||.|+.||.++++.
T Consensus 167 ~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 167 EDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred cCCccccceEEEECCCCEEEEEECCCCcE
Confidence 4432 4577788999999999998875
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.81 E-value=4.5e-06 Score=75.60 Aligned_cols=235 Identities=10% Similarity=-0.025 Sum_probs=140.7
Q ss_pred ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccC-----------------CCeeEEEEeeeC-CeEEEEecC
Q 014977 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS-----------------GGFRIVEMLFRC-NILALVGAG 106 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~l~s~~ 106 (415)
...+++|.++|+++.++. ++.|..|+.++........... .......+.+.+ ++.++++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 356778899998777777 8889989876533221110000 012467788886 777666644
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEE---c---cCceeEEEEcC-CeEEEEeC--------------------CeEEEEEc
Q 014977 107 DNSQYPPTKVIIWDDHQSRCIGEFA---F---RSDVRSVKLSR-DRIVVVLE--------------------HKIYVYSF 159 (415)
Q Consensus 107 ~d~~~~~~~i~vwd~~~~~~~~~~~---~---~~~i~~l~~~~-~~~~~~~d--------------------~~i~iwd~ 159 (415)
. +.|..+|..+++. ..+. . ......+++.+ +|.+.+.| +.|..||.
T Consensus 100 ~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 100 Y------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp T------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred C------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 3 4588888665532 2222 1 13578899999 88776621 56888887
Q ss_pred CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977 160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (415)
.+++......... ....+++++++..|.++....+.|..++..+. ....+....+ ...+++.++|++.++...
T Consensus 173 ~~~~~~~~~~~~~---~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLLLKELH---VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEEEEEES---CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeccCCc---cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 7665433222212 22335556666555444445678888666542 2222222223 778999999987666544
Q ss_pred ----------CCcEEEEEECCCCcEEEEEecCCC--cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 237 ----------RGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 237 ----------dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+. |..+|. .++.+..+..... ...+..+++ .+++++++....+.|.++++....
T Consensus 249 ~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 249 ELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred cccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 456 888886 5887777764211 234666666 466666665667889999987544
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.80 E-value=3.3e-05 Score=79.01 Aligned_cols=236 Identities=12% Similarity=0.137 Sum_probs=151.3
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
|.++...+++.+.+...++.+..|+..+........ ......+.++....++.+.++... +.|..||..+++.
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKEI 247 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCeE
Confidence 888888888876664336678888876543221101 122445777777777776666543 4588899776654
Q ss_pred EEEEEc---------cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEecc-----CCCcceEEEecCCCceEEEE
Q 014977 127 IGEFAF---------RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL-----ANLRGLCCLSHHSSTSVLAC 191 (415)
Q Consensus 127 ~~~~~~---------~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~ 191 (415)
. .+.+ ...|.++...+++.+.+ .++.|.+||..+++........ .....+.++..+.++.+.+
T Consensus 248 ~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 325 (795)
T 4a2l_A 248 K-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL- 325 (795)
T ss_dssp E-EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-
T ss_pred E-EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-
Confidence 3 3322 35689999998887776 5568999998776543322111 1123567788888877654
Q ss_pred eCCccCeEEEEEcCCcceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------C
Q 014977 192 PGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------G 258 (415)
Q Consensus 192 ~g~~dg~v~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------~ 258 (415)
|..++-|..++........+.. ....|.++...++|. |..|+.++. |..||..+++...-... .
T Consensus 326 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 326 -GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDESARG 402 (795)
T ss_dssp -EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC------C
T ss_pred -EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCcccC
Confidence 3355566666555444444332 235689999999887 445777777 99999877665432211 0
Q ss_pred CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.....|.++...++|+.|..|+.++-|.+||.++++
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 123579999998898856678877779999987765
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=1.2e-06 Score=85.94 Aligned_cols=236 Identities=8% Similarity=-0.039 Sum_probs=138.6
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--eEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 131 (415)
+..+++++ ++.+..+|..+++.+....+..+.. .+. ..... ++.+++.......-.++.|..+|..+|+.+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 44666676 8999999999888877765522110 111 01112 4455555432000012899999999999999887
Q ss_pred ccCce---------------------------------------eEEEEcCC-eEEEE-e-C----------------Ce
Q 014977 132 FRSDV---------------------------------------RSVKLSRD-RIVVV-L-E----------------HK 153 (415)
Q Consensus 132 ~~~~i---------------------------------------~~l~~~~~-~~~~~-~-d----------------~~ 153 (415)
..... ..+++.++ +.+.+ . + +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32211 12455553 33333 2 1 25
Q ss_pred EEEEEcCCceeeeEEeccCCC-------cceEEEecCCCce--EEEEeCCccCeEEEEE-cCCcceEEEecCc-------
Q 014977 154 IYVYSFVDLKLLHQIETLANL-------RGLCCLSHHSSTS--VLACPGLQRGQVRIEH-FGLNMIKLINAHD------- 216 (415)
Q Consensus 154 i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~l~~~g~~dg~v~i~~-~~~~~~~~~~~~~------- 216 (415)
|..+|..+++.+..++...+. ...+.+....+++ .+++.++.+|.+++.+ .+++.+.......
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~ 353 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence 999999999998877643211 1111122112342 2333466788888855 4555544443211
Q ss_pred ------cce--------------------------EEEEeCCCCCEEEEEe-----------------------------
Q 014977 217 ------SHI--------------------------ACFTLTLDGLLLATAS----------------------------- 235 (415)
Q Consensus 217 ------~~i--------------------------~~l~~sp~g~~l~s~s----------------------------- 235 (415)
.++ ..++++|+..+|++..
T Consensus 354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 111 2357788777776653
Q ss_pred --------CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 236 --------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 236 --------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.++. |..||+.+++.+.++... ..+....+...+..++.++.||.|+.||.++++..
T Consensus 434 ~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 434 GPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 2467 999999999998887642 12222222334567778999999999999998853
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=3.9e-06 Score=72.29 Aligned_cols=179 Identities=9% Similarity=0.089 Sum_probs=121.5
Q ss_pred CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCcee--EEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVR--SVKLSRDRIVVV--LEHKIYVYSFVDL 162 (415)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~--~l~~~~~~~~~~--~d~~i~iwd~~~~ 162 (415)
......+.|+.+ .++.+.+.+ +.|+++|+++++.+..+ ...... .+++..+..+++ .++.+.+||..++
T Consensus 54 ~~ftqGL~~~~~-~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFHQG-HFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEETT-EEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEECC-EEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence 344456677754 555555655 88999999999998888 655543 477777766666 5999999999999
Q ss_pred eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecC--cc---ceEEEEeCCCCCEEEEEeC
Q 014977 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--DS---HIACFTLTLDGLLLATAST 236 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~s~ 236 (415)
+.+.++..... ...++++. ..|+.+. .++.|.+.+. +.+.+..+... .. .++.+.|. +|++.+....
T Consensus 127 ~~~~ti~~~~e---GwGLt~Dg--~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 127 QRERTTRYSGE---GWGLCYWN--GKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp EEEEEEECSSC---CCCEEEET--TEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred cEEEEEeCCCc---eeEEecCC--CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 99999976443 23444543 3444433 3777887554 44555555432 22 34567776 7765555545
Q ss_pred CCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s 280 (415)
+.. |.+.|.++|+.+..+.... .....+.|+|+|+++.|++.+
T Consensus 200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 667 9999999999998887420 113578999999876665544
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.77 E-value=1.2e-05 Score=68.56 Aligned_cols=195 Identities=14% Similarity=0.161 Sum_probs=128.1
Q ss_pred CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCce--eEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV 160 (415)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i--~~l~~~~~~~~~~--~d~~i~iwd~~ 160 (415)
........+.|+++ .++.+.+.+ ..+.|+++|+.+++.+..+...... ..+.+..+..+.+ .++.+.+||..
T Consensus 18 d~~~ftqGL~~~~~-~LyestG~~---g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 18 DTTAFTEGLFYLRG-HLYESTGET---GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CTTCCEEEEEEETT-EEEEEECCT---TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCccccccEEEECC-EEEEECCCC---CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 44455667788875 445554442 1259999999999999998855444 3456666666666 59999999999
Q ss_pred CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCc-----cceEEEEeCCCCCEEEEE
Q 014977 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----SHIACFTLTLDGLLLATA 234 (415)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~-----~~i~~l~~sp~g~~l~s~ 234 (415)
+.+.+.++..... ...++++.. .++ .+- .++.|.+.+. +.+.+..+.... ..++.+.+. +|++.+..
T Consensus 94 tl~~~~ti~~~~~---Gwglt~dg~-~L~-vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGE---GWALTSDDS-HLY-MSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTEEEEEEECSSC---CCEEEECSS-CEE-EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cCcEEEEEeCCCC---ceEEeeCCC-EEE-EEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 9999999976543 244555543 333 333 3677887554 445555554322 234556665 67655555
Q ss_pred eCCCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 235 STRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
-.+.. |.+.|.++|+.+..+.... .....+.|+++|+++.|.+.+.- -=++|.++-
T Consensus 167 w~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-wp~~~~v~~ 233 (243)
T 3mbr_X 167 WLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-WPMLYEIRL 233 (243)
T ss_dssp TTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-CSEEEEEEE
T ss_pred CCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-CCcEEEEEE
Confidence 45667 9999999999998887321 12367899999987777665532 124555543
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=1.5e-05 Score=69.39 Aligned_cols=192 Identities=11% Similarity=-0.008 Sum_probs=124.8
Q ss_pred ceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977 46 ELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....+.|++++.++++.+ ++.|+++|+.+++......+. .......+.+..+..+.++ ..+ +.+.++|..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~~fgeGi~~~g~~lyv~t-~~~-----~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DSYFGEGLTLLNEKLYQVV-WLK-----NIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEE-TTC-----SEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CCcceEEEEEeCCEEEEEE-ecC-----CEEEEEECC
Confidence 468999999876555543 578999999998776665552 2233345666665555544 444 999999999
Q ss_pred CCCEEEEEEcc-CceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--Cc-ceEEEecCCCceEEEEeCCc
Q 014977 123 QSRCIGEFAFR-SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LR-GLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 123 ~~~~~~~~~~~-~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~g~~ 195 (415)
+.+.+.++... ..-.. +++|+..+. .++.|.++|..+.+.+..+..... ++ ....+.+. ++.+.+. ...
T Consensus 95 t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn-~~~ 170 (266)
T 2iwa_A 95 TLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN-IWQ 170 (266)
T ss_dssp TTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred CCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe-cCC
Confidence 99999998754 33333 444544333 568999999999988888764322 11 12344444 4555444 334
Q ss_pred cCeEEE-EEcCCcceEEEecCc-------------cceEEEEeCCCCCEEEE-EeCCCcEEEEEECCCC
Q 014977 196 RGQVRI-EHFGLNMIKLINAHD-------------SHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDG 249 (415)
Q Consensus 196 dg~v~i-~~~~~~~~~~~~~~~-------------~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~ 249 (415)
++.|.+ +..+++.+..+.... ...+.|+|+|+++.|++ +...+. |.+.++...
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~ 238 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV 238 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence 667776 555667777765321 34589999999875554 545666 888877543
No 246
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.74 E-value=8.6e-05 Score=68.08 Aligned_cols=258 Identities=13% Similarity=0.171 Sum_probs=176.8
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc-
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS- 142 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~- 142 (415)
...|.|.|+.......++.. .....+ .+|....++--.. ..+.++|+++.+.++.+.....|.--.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi-~AdsAI----MnP~~~iiALrag------~~lQiFnle~K~klks~~~~e~VvfWkWis 115 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI-SADSAI----MNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC-CCSEEE----ECSSSSCEEEEET------TEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred CCeEEEEECCCCCcceeccc-ccceee----eCCCCcEEEEecC------CeEEEEchHHhhhhcceecCCCceEEEecC
Confidence 44688899987666666554 333333 2444433333222 89999999999999999977777777775
Q ss_pred CCeEEEEeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeCC------ccCeEEEEEcCCcceEEEe
Q 014977 143 RDRIVVVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN 213 (415)
Q Consensus 143 ~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~v~i~~~~~~~~~~~~ 213 (415)
++..-++.+..|+-|++.. ..+.+.+..|. ....++.+..+++.++++..|- -.|.+.++....+.-+.+.
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie 195 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE 195 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe
Confidence 4555555999999999964 35666665543 2356788888999888876653 3577888999999999999
Q ss_pred cCccceEEEEeCCCC---CEEEEEeCC---CcEEEEEECCCC--------cEEEEEe--cCCCcccEEEEEeCCCCCEEE
Q 014977 214 AHDSHIACFTLTLDG---LLLATASTR---GTLIRIFNTVDG--------TRLQEVR--RGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 214 ~~~~~i~~l~~sp~g---~~l~s~s~d---g~~I~vwd~~~~--------~~~~~~~--~~~~~~~v~~l~~spdg~~l~ 277 (415)
+|......+.+.-+. .+++.+... +. ++|-++... +....+. ......-..++..++.-..+.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 998877766654322 245545443 56 999998432 1111111 111123455788888888999
Q ss_pred EEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 014977 278 VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI 357 (415)
Q Consensus 278 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (415)
..+.-|.|++||++++.+. | .-++
T Consensus 275 viTK~G~i~lyDleTgt~i----------------------------------------~----------------~nrI 298 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCI----------------------------------------Y----------------MNRI 298 (494)
T ss_dssp EEETTSEEEEEETTTCCEE----------------------------------------E----------------EEEC
T ss_pred EEecCceEEEEecccceee----------------------------------------e----------------eecc
Confidence 9999999999999999854 1 2233
Q ss_pred CCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977 358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (415)
Q Consensus 358 ~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~ 389 (415)
..+...+.+...+ +-+++....|.|+-..+++
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 3445555555444 8899999999888888876
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=2.6e-06 Score=85.23 Aligned_cols=236 Identities=11% Similarity=0.022 Sum_probs=141.5
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCC--eeEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 131 (415)
+..+++++ ++.|..+|.++++.+......... ..+. ..... ++.+++..+....-.++.|..+|..+|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 44667777 999999999998887776542110 1110 00111 4455554332100023899999999999999886
Q ss_pred cc--Cc------------------------------eeEEEEcCCeEEEE---eCC-------------------eEEEE
Q 014977 132 FR--SD------------------------------VRSVKLSRDRIVVV---LEH-------------------KIYVY 157 (415)
Q Consensus 132 ~~--~~------------------------------i~~l~~~~~~~~~~---~d~-------------------~i~iw 157 (415)
.. .+ ...+++.++..++. .++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 00 11357776543333 233 49999
Q ss_pred EcCCceeeeEEeccCC---------CcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCc-----------
Q 014977 158 SFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD----------- 216 (415)
Q Consensus 158 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~----------- 216 (415)
|..+++.+..++.... +.....+..+.....+++.++.+|.+++.+. +++.+.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999999888865321 1122233333332223344778999998654 455443222111
Q ss_pred -cc------------------------eEEEEeCCCCCEEEEEe------------------------------------
Q 014977 217 -SH------------------------IACFTLTLDGLLLATAS------------------------------------ 235 (415)
Q Consensus 217 -~~------------------------i~~l~~sp~g~~l~s~s------------------------------------ 235 (415)
.+ -..++++|+..+++...
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00 01257777766655421
Q ss_pred CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+|. |..||+.+|+.+..+... .+.....+...+.+++.++.||.|+.||.++++..
T Consensus 436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 2377 999999999998877642 22333334456788899999999999999988743
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.73 E-value=1e-08 Score=95.17 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=114.0
Q ss_pred CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977 55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR 133 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 133 (415)
++..+++++ |+.|+.||..+++....... . .+.+..+..++..++.++.| +.|+.||..+|+.+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeecc
Confidence 467888888 99999999999887776554 1 22222233455556665665 99999999999877665421
Q ss_pred --Ccee-EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCc
Q 014977 134 --SDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLN 207 (415)
Q Consensus 134 --~~i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~ 207 (415)
..+. ...+..++.+++ .++.|+.||..+|+.+..+..+.. ..+++ .+..+++ ++.++.|+.|+. +++
T Consensus 79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~-~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYL-GRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEE-EEEEEEEECCCSSSSS
T ss_pred CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEE-EecCCEEEEEECCCCC
Confidence 1111 111113444333 688999999999998877765431 22333 3444544 567888988775 455
Q ss_pred ceEEEecCccceEEEEeCCCC---CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE-EEEEeCCCCCEEEE--EeC
Q 014977 208 MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI-YSIALSPNVQWLAV--ASD 281 (415)
Q Consensus 208 ~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~s--~s~ 281 (415)
.+..+..+. ....++.++. ..+++++.+|. |+.||..+|+.+..+.. ..++ ....++++|...+. ...
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~~ 225 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINVA 225 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEEE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceeec
Confidence 544443221 1223344432 45777888999 99999999999888774 2344 34456677753210 011
Q ss_pred CCeEEEEEceecc
Q 014977 282 KGTVHIFSLRVRV 294 (415)
Q Consensus 282 dg~i~vwd~~~~~ 294 (415)
++.++.+|..+++
T Consensus 226 ~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 226 VETLRYLTFMSGE 238 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccceeeeehhcCC
Confidence 4457777777665
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.72 E-value=1.2e-05 Score=78.91 Aligned_cols=233 Identities=7% Similarity=-0.039 Sum_probs=134.4
Q ss_pred EEEEe-CCcEEEEEccCCceeEEEeccCCC--eeEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977 59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (415)
Q Consensus 59 la~g~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~ 134 (415)
+++++ ++.+.-+|.++++.+.+..+.... ..+.. .... ++.+++..+.+..-.++.|..+|.++|+.+..+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 66776 899999999998887776542210 01110 0111 4555554431000012899999999999999887332
Q ss_pred ce---------------------------------------eEEEEcCCe-EEEE--eC----------------CeEEE
Q 014977 135 DV---------------------------------------RSVKLSRDR-IVVV--LE----------------HKIYV 156 (415)
Q Consensus 135 ~i---------------------------------------~~l~~~~~~-~~~~--~d----------------~~i~i 156 (415)
.. ..+++.++. .+++ .+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 21 123444433 3333 22 38999
Q ss_pred EEcCCceeeeEEeccCCCc-------ceEEEecC-CCc--eEEEEeCCccCeEEEEEc-CCcceEEEecCc---------
Q 014977 157 YSFVDLKLLHQIETLANLR-------GLCCLSHH-SST--SVLACPGLQRGQVRIEHF-GLNMIKLINAHD--------- 216 (415)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~--------- 216 (415)
+|..+++.+..++...+.. ..+-+... .++ ..+++.++.+|.+++.+. +++.+.......
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 362 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD 362 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence 9999999988876543211 11112111 233 123334668898888554 455544433110
Q ss_pred ----cce--------------------------EEEEeCCCCCEEEEEe-------------------------------
Q 014977 217 ----SHI--------------------------ACFTLTLDGLLLATAS------------------------------- 235 (415)
Q Consensus 217 ----~~i--------------------------~~l~~sp~g~~l~s~s------------------------------- 235 (415)
.++ ..++++|+..++++..
T Consensus 363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p 442 (599)
T 1w6s_A 363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP 442 (599)
T ss_dssp TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence 111 2356777666554421
Q ss_pred --------CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 236 --------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 236 --------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
.+|. |..||+.+|+.+.+.... .+...-.+...+.+++.++.||.|+.||.++++..
T Consensus 443 ~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 443 KGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 3467 999999999988877632 11111112235667778999999999999999853
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.68 E-value=4.5e-05 Score=68.38 Aligned_cols=227 Identities=8% Similarity=0.010 Sum_probs=133.9
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
.....++|+++|+++++.. ++.|..|+.+.. ...... .......+.+.+++.++++.... ....|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~---~~~~p~gia~~~dG~l~vad~~~---~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT---VEGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE---CSSEEEEEEECTTSCEEEEEECT---TSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe---CCCCceeEEEcCCCcEEEEeccC---CcceEEEEcCCC
Confidence 4678999999999777765 888888887652 222222 23357778888888766654321 003477778778
Q ss_pred CCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEEec-------cCCCcceEEEecCCCceEEE
Q 014977 124 SRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIET-------LANLRGLCCLSHHSSTSVLA 190 (415)
Q Consensus 124 ~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~ 190 (415)
++....... ......++..+++..++ .++.|+++|...++. +..... .........+++ ++..|.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~ly 182 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLY 182 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEE
T ss_pred CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEE
Confidence 876544332 22334555566665554 368899999765421 111110 011112334444 444454
Q ss_pred EeCCccCeEEEEEcCC--c--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977 191 CPGLQRGQVRIEHFGL--N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (415)
Q Consensus 191 ~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (415)
++....+.|..++... . ....+.. ......++++++|+++++....+. |.++|.. ++..............++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~~ 259 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGSTA 259 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCceE
Confidence 4555677888866553 1 1122211 134567899999987776666778 9999964 665322111112246889
Q ss_pred EEeC---CCCCEEEEEeCCC
Q 014977 267 IALS---PNVQWLAVASDKG 283 (415)
Q Consensus 267 l~~s---pdg~~l~s~s~dg 283 (415)
++|. |+++.|++++..+
T Consensus 260 ~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 260 VAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECCSTTTTTEEEEEECTT
T ss_pred EEEecccCCCCEEEEECCCC
Confidence 9998 8988877766544
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=3e-05 Score=66.84 Aligned_cols=181 Identities=9% Similarity=0.003 Sum_probs=117.2
Q ss_pred CceEEEEEeCCCCEEEEEe-CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
.....+.|+ ++.++.+.+ +| .|+++|+++++......+ ........+....+..+.++.. + +.+.++|.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~-~-----~~v~v~D~ 114 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWK-N-----GLGFVWNI 114 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESS-S-----SEEEEEET
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEee-C-----CEEEEEEC
Confidence 335889998 666555555 55 899999999887776665 3333333455566666666543 3 99999999
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--CCc-ceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--NLR-GLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~g~~ 195 (415)
.+.+.+.++.....=..++. ++..+. .++.|.++|..+.+.+..+.... .++ ....+.+. ++.+.+. ...
T Consensus 115 ~t~~~~~ti~~~~eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan-~w~ 190 (262)
T 3nol_A 115 RNLRQVRSFNYDGEGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN-VWQ 190 (262)
T ss_dssp TTCCEEEEEECSSCCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred ccCcEEEEEECCCCceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE-Ecc
Confidence 99999999986543344554 444333 35679999999999888876532 121 22234443 4555544 334
Q ss_pred cCeEEE-EEcCCcceEEEecC------------ccceEEEEeCCCCCEEEEEeCC
Q 014977 196 RGQVRI-EHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 196 dg~v~i-~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~d 237 (415)
+..|.+ +..+++.+..+... ....+.|+|+|+++.|++.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 556665 55566666666532 1345889999998877776654
No 252
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.64 E-value=2e-06 Score=80.45 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=68.0
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-----------CCeEEEEEcCCceeeeEEecc-CCC----c
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-----------EHKIYVYSFVDLKLLHQIETL-ANL----R 175 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-----------d~~i~iwd~~~~~~~~~~~~~-~~~----~ 175 (415)
+.|.++|..+++.+.++.....- .+.++||++.+. . ++.|.++|..+++.+..+... ... .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 69999999999999999854444 899999998665 2 457999999999998887643 100 1
Q ss_pred ceEEEecCCCceEEEEeCCc-cCeEEEEEc-CCcceEEEe
Q 014977 176 GLCCLSHHSSTSVLACPGLQ-RGQVRIEHF-GLNMIKLIN 213 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~-dg~v~i~~~-~~~~~~~~~ 213 (415)
....+.+++++++++++... ++.|.+.+. ..+.+..+.
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 12234455566666664433 577888554 445555554
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.63 E-value=0.00017 Score=73.81 Aligned_cols=236 Identities=10% Similarity=0.082 Sum_probs=151.9
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc------CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~ 117 (415)
...|.++...++|.+.+...++.+.+|+..+..... .... -....+.++....++.+.++.. +-|.
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-------~Gl~ 285 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-------NDLN 285 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-------SCEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeC-------Chhh
Confidence 457888888888876655446678889977643221 1110 1235678888888777666543 4588
Q ss_pred EEECCCCCEEEEEE--------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEecc-----CCCcceEEEec
Q 014977 118 IWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL-----ANLRGLCCLSH 182 (415)
Q Consensus 118 vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~ 182 (415)
+||..+++...... ....|.++...++|.+.+ .++.|..|+..+.+.. .+... .....+.++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE
T ss_pred eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE
Confidence 89977665433221 135699999999888777 4578999987554322 22111 01224677888
Q ss_pred CCCceEEEEeCCccCeEEEEEcCCcceEEEec---------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINA---------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~---------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
+.++.+.+ |..++-|..++........+.. ....|.++...++|++|..|+.++. |.+||..+++..
T Consensus 365 d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~~~~- 440 (795)
T 4a2l_A 365 DKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSGQVE- 440 (795)
T ss_dssp CTTSCEEE--EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTCCEE-
T ss_pred CCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCCcEE-
Confidence 87776654 4455567766665544444421 2356889999899986677787788 999998877654
Q ss_pred EEecC---CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 254 EVRRG---VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~~~---~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+... .....|.++...++|++.+. +.+| |.+|+.++++
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~ 482 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRS 482 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTE
T ss_pred EeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCe
Confidence 33210 12347999999988885554 4455 8889977654
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=3.3e-05 Score=66.59 Aligned_cols=181 Identities=8% Similarity=-0.003 Sum_probs=116.0
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
.....+.|+. +.++.+.+ +|.|+++|+++++..... + ........+....+..+.++.. + +.+.+||..+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~-~-----~~v~V~D~~T 125 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWT-E-----GLLFTWSGMP 125 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESS-S-----CEEEEEETTT
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEcc-C-----CEEEEEECCc
Confidence 3457888873 44444444 888999999998776665 5 3333333456666666666543 3 9999999999
Q ss_pred CCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCc---ceEEEecCCCceEEEEeCCccCeE
Q 014977 124 SRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR---GLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 124 ~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
.+.+.++.....-..++......++. .++.|+++|..+.+.+..+.....+. ....+.+. ++.+.+. ...+..|
T Consensus 126 l~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw~s~~I 203 (268)
T 3nok_A 126 PQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IWHSSDV 203 (268)
T ss_dssp TEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTCSEE
T ss_pred CcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-ECCCCeE
Confidence 99999999655545666554333333 47889999999999888876533221 22334444 4555544 3345566
Q ss_pred EE-EEcCCcceEEEecC-------------ccceEEEEeCCCCCEEEEEeC
Q 014977 200 RI-EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATAST 236 (415)
Q Consensus 200 ~i-~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~ 236 (415)
.+ +..+++.+..+... ....+.|+++|+++.|++.+.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 55 55566666665432 135688999998765555443
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.54 E-value=2.9e-05 Score=76.06 Aligned_cols=193 Identities=9% Similarity=0.022 Sum_probs=108.9
Q ss_pred CCCEEEEEe-CCcEEEEEc-cCCceeEEEeccCCCe---------eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
++..++... ++.|.-+|. ++++.+.+..+..... ....+... ++.+++.. .+ +.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~-~d-----g~l~alD~~t 134 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQ-AN-----GHLLALDAKT 134 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CCEEEEEe-CC-----CEEEEEECCC
Confidence 444455555 688999999 8888877765422110 00011222 34444443 33 8999999999
Q ss_pred CCEEEEEEccC-----cee-EEEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccCCCcc-------------
Q 014977 124 SRCIGEFAFRS-----DVR-SVKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLRG------------- 176 (415)
Q Consensus 124 ~~~~~~~~~~~-----~i~-~l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~~~~~------------- 176 (415)
|+.+..+.... .+. ...+. ++.+++ . ++.|+.+|..+++.+..+........
T Consensus 135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 99998887322 222 11222 455555 2 68999999999999887754321100
Q ss_pred -----------------------eEEEecCCCceEEEE-eCC----------cc----CeEEE-EEcCCcceEEEecC--
Q 014977 177 -----------------------LCCLSHHSSTSVLAC-PGL----------QR----GQVRI-EHFGLNMIKLINAH-- 215 (415)
Q Consensus 177 -----------------------~~~~~~~~~~~~l~~-~g~----------~d----g~v~i-~~~~~~~~~~~~~~-- 215 (415)
...++.+++...+.+ ++. .+ +.|.. +..+++.+..++..
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 001222332223332 221 01 23444 44455665555432
Q ss_pred c--------cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 216 D--------SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 216 ~--------~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
. .++ -+....+|+ .++.++.+|. ++++|..+|+.+..+..
T Consensus 294 d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 294 DEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV 344 (571)
T ss_dssp CSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred cccccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence 1 111 122224674 5778888999 99999999999887764
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.54 E-value=0.00011 Score=62.70 Aligned_cols=183 Identities=10% Similarity=0.025 Sum_probs=116.6
Q ss_pred CceEEEEEeCCCCEEEEEe-C--CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
.....+.|++ +.++.+.+ . ..|+++|+++++......+.. ......+....+..+.++.. + +.+.++|.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~-~-----~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWR-N-----HEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS-S-----SEEEEEET
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEee-C-----CEEEEEEC
Confidence 4467999987 44444444 3 489999999988777666633 32233445556666665543 3 99999999
Q ss_pred CCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCC--Cc-ceEEEecCCCceEEEEeCCccC
Q 014977 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN--LR-GLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~g~~dg 197 (415)
.+.+.+.++.....-..++......++. .++.|.++|..+.+.+..+....+ ++ ....+.+. ++.+.+..- .+.
T Consensus 93 ~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-~s~ 170 (243)
T 3mbr_X 93 ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-LTS 170 (243)
T ss_dssp TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-TTT
T ss_pred CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-CCC
Confidence 9999999999655545666543323333 567899999999998888765332 11 22334444 455555433 344
Q ss_pred eEEE-EEcCCcceEEEecC-------------ccceEEEEeCCCCCEEEEEeCC
Q 014977 198 QVRI-EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATASTR 237 (415)
Q Consensus 198 ~v~i-~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~d 237 (415)
.|.+ +..+++.+..+... ....+.|+++|+++.|++.+..
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5554 55666666665521 1356889999988776666543
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.49 E-value=4.9e-05 Score=73.19 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=120.3
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEE-c-CCeEEEE-e--------------------CC
Q 014977 98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKL-S-RDRIVVV-L--------------------EH 152 (415)
Q Consensus 98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~-~-~~~~~~~-~--------------------d~ 152 (415)
|+.++.....+ ++.|.+.|+.+.++...+. ....+..+++ + |++.++. . ++
T Consensus 100 DG~~lfVnd~~----~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCC----CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 55544443332 2789999999999888665 4567888887 4 7877766 2 24
Q ss_pred eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc--------------Ce--------------------
Q 014977 153 KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR--------------GQ-------------------- 198 (415)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--------------g~-------------------- 198 (415)
.+.+.|..+.+.+.++....++ ..+.+++ ++.++++++... ..
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~p-d~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGNL-DNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSCC-CCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred eEEEEECCCCeEEEEEEeCCCc-cceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 7999999999998888754443 3344555 455665544322 12
Q ss_pred ---EEEEEcCC---cc-eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCc------------EEEEEecC
Q 014977 199 ---VRIEHFGL---NM-IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT------------RLQEVRRG 258 (415)
Q Consensus 199 ---v~i~~~~~---~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~------------~~~~~~~~ 258 (415)
|.+.+... +. +..+.. .....++.++|||+++++++. +.. |.++|+.+.+ ...++..
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred ECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC-
Confidence 22322221 11 222322 123457899999998877765 556 9999998653 3444442
Q ss_pred CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
......++|+|+|...++.-.|++|.+||+++.
T Consensus 330 --G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 330 --GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp --CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred --CCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence 335789999999944456667999999999883
No 258
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.48 E-value=1.7e-06 Score=79.62 Aligned_cols=210 Identities=9% Similarity=-0.077 Sum_probs=116.1
Q ss_pred EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977 49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP 112 (415)
Q Consensus 49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (415)
.+.++||+++++++. ++.|.+||..+.+......+.+. ......+.++|++..++.+... .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~---~ 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---S 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---S
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC---C
Confidence 799999999888874 57899999999887666544211 1223457788988665554321 0
Q ss_pred CCeEEE--EECCCCCEEEEEEccCce--------eEEEEcCCeE------------------------------------
Q 014977 113 PTKVII--WDDHQSRCIGEFAFRSDV--------RSVKLSRDRI------------------------------------ 146 (415)
Q Consensus 113 ~~~i~v--wd~~~~~~~~~~~~~~~i--------~~l~~~~~~~------------------------------------ 146 (415)
...|.+ +|+.+ +..+...+.+ .-+.+++++.
T Consensus 146 ~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~ 222 (368)
T 1mda_H 146 SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence 167888 88766 3334311100 0011111111
Q ss_pred --EEE--eCCeEEEEEcCCc--eeeeEEecc----------CCCcceEEEecCCCceEEEEe-C-C-----ccCeEEEEE
Q 014977 147 --VVV--LEHKIYVYSFVDL--KLLHQIETL----------ANLRGLCCLSHHSSTSVLACP-G-L-----QRGQVRIEH 203 (415)
Q Consensus 147 --~~~--~d~~i~iwd~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~-g-~-----~dg~v~i~~ 203 (415)
++. . +.+.+.|+... +.+..+... ......+.++++.+..+++.. . . .++.. +++
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~-ViD 300 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS-SVT 300 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE-EEE
T ss_pred CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE-EEE
Confidence 111 2 44555555332 111111110 000112445555433222221 1 1 23444 644
Q ss_pred -cCCcceEEEecCccceEEEEeCCCCC-EEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977 204 -FGLNMIKLINAHDSHIACFTLTLDGL-LLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (415)
Q Consensus 204 -~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (415)
.+.+.+..+.... ....|+|+|||+ ++++.. .++. |.++|+.+++.+.++..+ .....+++.+
T Consensus 301 ~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg---~~P~~i~~~~ 366 (368)
T 1mda_H 301 ASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELD---KGPESLSVQN 366 (368)
T ss_dssp SSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCC---SCCCEEECCC
T ss_pred CCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECC---CCCCEEEeec
Confidence 4455566555433 578999999998 456666 5888 999999999999998853 2345666654
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.46 E-value=9.6e-05 Score=73.86 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=110.4
Q ss_pred CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------e-EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------R-IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
+..+++++ ++.|.-+|..+++.+.+........ . ...+... ++.+++. ..+ +.|..+|..+|+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~-~~d-----g~l~alD~~tG~ 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVG-TLD-----GRLIALDAKTGK 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence 34555555 8889999998888877765421110 0 0011222 2344443 334 999999999999
Q ss_pred EEEEEEcc-----CceeE-EEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccC-CCcc--------------
Q 014977 126 CIGEFAFR-----SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLA-NLRG-------------- 176 (415)
Q Consensus 126 ~~~~~~~~-----~~i~~-l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~-~~~~-------------- 176 (415)
.+..+... ..+.. ..+. ++.+++ . ++.|+.+|..+|+.+..+.... .+..
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred EeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 99888732 11111 1122 455555 2 4899999999999988875321 1100
Q ss_pred --------------eEEEecCCCceEEEEeCCccC-------------------eEEEEE-cCCcceEEEec--Cc----
Q 014977 177 --------------LCCLSHHSSTSVLACPGLQRG-------------------QVRIEH-FGLNMIKLINA--HD---- 216 (415)
Q Consensus 177 --------------~~~~~~~~~~~~l~~~g~~dg-------------------~v~i~~-~~~~~~~~~~~--~~---- 216 (415)
....+.+++...+++ +..++ .|..++ .+++.+..++. |.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~ 296 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF 296 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence 011233443334443 33444 255444 45566655553 22
Q ss_pred ---cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+.....+..+|+ .|+.++.+|. ++++|..+|+.+..+.
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK 341 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence 2222222333665 6888999999 9999999999986554
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=0.00014 Score=65.58 Aligned_cols=181 Identities=10% Similarity=0.040 Sum_probs=105.9
Q ss_pred EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc---------------------cCceeEEEEcC-CeEE
Q 014977 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------------------RSDVRSVKLSR-DRIV 147 (415)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~---------------------~~~i~~l~~~~-~~~~ 147 (415)
...+++++++.++..+..+ +.|..|+..+++.. .+.. ...+..+++.+ ++.+
T Consensus 21 p~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CCCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred ceEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 3446677777634444444 88999987765543 2321 13578899997 7766
Q ss_pred EE--eCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCC-CceEEEEeCC----------------ccCeEEEEEcC
Q 014977 148 VV--LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHS-STSVLACPGL----------------QRGQVRIEHFG 205 (415)
Q Consensus 148 ~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~g~----------------~dg~v~i~~~~ 205 (415)
++ ..+.|..+|..+++. ..+... ........+..++ ++.+.++... .++.|..++..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 66 355688888765543 222111 1111345566677 6666554322 13566666665
Q ss_pred CcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977 206 LNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 206 ~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
...+..+...-.....|+++|+|++|+.+ ...+. |.+|++.... ....+.. ..+ ...++++++|++.++...
T Consensus 174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence 44444333323445679999999866655 45577 9999987421 1222222 223 778999999986666544
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.44 E-value=0.00012 Score=71.83 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=40.3
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~ 296 (415)
+|. |..||+.+|+.+.+..... ++..-.....+.+++.++.||.++.||.++++..
T Consensus 465 ~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGS-LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEE-EEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cce-EEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 577 9999999999987776421 2211111224667888999999999999999853
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.00028 Score=65.44 Aligned_cols=233 Identities=7% Similarity=-0.060 Sum_probs=135.5
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~ 127 (415)
+.+..+ ..+|+.+....|+.++++....... + ........+.|++ ++.++.+.... +.|..+++..+...
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~--~-~~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLL--L-NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSNVE 151 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCCCEEE--E-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCCEE
T ss_pred ECCccc-cceeEeecCccceeeccCCCcEEEE--e-cCCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCCCCcE
Confidence 333334 3455555666777777765433222 2 3334567888885 55555554444 89999998766544
Q ss_pred EEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeEEE
Q 014977 128 GEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRI 201 (415)
Q Consensus 128 ~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i 201 (415)
..+. .......+++.+. +.+.+ ..+.|.+.++........+..... ....++.+|.+..|..+.... +.|..
T Consensus 152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~--~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCS--CEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCC--CCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 4333 2335567888863 43333 456888888764332222222222 344555555444444444344 67777
Q ss_pred EEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 202 EHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
.+.++.....+. ..-.....|+++|++..|+.+.. .+. |..+|+........+.. .......|++ ..+.++++-
T Consensus 230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~--~~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECS--SCSSEEEEEE-ETTEEEEEE
T ss_pred EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEEC--CCCCceEEEE-ECCEEEEee
Confidence 777776555543 33445789999987776666554 455 99999864433323332 2335678888 344555566
Q ss_pred eCCCeEEEEEceecccC
Q 014977 280 SDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 280 s~dg~i~vwd~~~~~~~ 296 (415)
...+.|..++..+++..
T Consensus 306 ~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 306 WHTKSINSANKFTGKNQ 322 (386)
T ss_dssp TTTTEEEEEETTTCCSC
T ss_pred CCCCeEEEEECCCCcce
Confidence 66778888886566543
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.44 E-value=0.00049 Score=62.84 Aligned_cols=234 Identities=7% Similarity=-0.077 Sum_probs=136.5
Q ss_pred eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
..|.+..+ ..+|+.+....|+..+++.... ...+ ........+.|++ ++.++.+.... +.|..+++..+.
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~--~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~ 106 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEY--TLLL-NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSN 106 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCE--EEEE-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCee--EEee-cCCCceEEEEEeccccEEEEEeccC-----CceEEEecCCCC
Confidence 44555555 3456666656677777765332 2222 2334467888885 45555554444 899999987665
Q ss_pred EEEEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeE
Q 014977 126 CIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQV 199 (415)
Q Consensus 126 ~~~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v 199 (415)
....+. .......+++.+. +.+.. ..+.|.+.++........+..... ....++.+|.+..|..+.... +.|
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~--~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS--CEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC--CcceEEEecCcCeEEEeccCCCCEE
Confidence 444333 2345678888863 44433 457899999764433222222222 345555565444444444444 677
Q ss_pred EEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977 200 RIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 200 ~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
...+.++.....+. ..-.....|+++|++..|+.+.. .+. |..+|+........+.. .......|++ .++.+++
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~--~~~~P~giav-~~~~ly~ 260 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYW 260 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECS--SCSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeC--CCCCceEEEE-ECCEEEE
Confidence 77777765554442 23445789999987776666654 455 99999864433323332 2335677888 3445555
Q ss_pred EEeCCCeEEEEEceeccc
Q 014977 278 VASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 278 s~s~dg~i~vwd~~~~~~ 295 (415)
+-...+.|..++..+++.
T Consensus 261 td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EETTTTEEEEEETTTCCS
T ss_pred ecCCCCeEEEEEccCCCc
Confidence 555677788887555554
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00094 Score=60.05 Aligned_cols=226 Identities=7% Similarity=-0.098 Sum_probs=132.1
Q ss_pred EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC----CCEEEEEE-
Q 014977 58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFA- 131 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~- 131 (415)
+|+.+..+.|+..++++...... + ........+.|++ ++.++.+.... +.|..+++.. ......+.
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~--~-~~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEE--E-CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred EEEEECCCeEEEEECCCcceEeh--h-cCCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEeC
Confidence 56666667788889886543222 2 2334567788886 45555555544 8999999775 22222222
Q ss_pred ccCceeEEEEcC-CeEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeEEEEEcCC
Q 014977 132 FRSDVRSVKLSR-DRIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGL 206 (415)
Q Consensus 132 ~~~~i~~l~~~~-~~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i~~~~~ 206 (415)
.-.....+++.+ ++.+ ++ ..+.|.++++........+..... ....++.+|.+..|..+.... +.|...+.++
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC--CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 224567888875 3443 33 467899999865433222332222 345555565444444433333 6777777777
Q ss_pred cceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEe-cCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 207 NMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 207 ~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
.....+. ..-.....|++++++..|+.+.. .+. |..+|+.... ...+. ..........|++. .+.++++-...+
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 6655543 23456789999998777766654 456 9999986433 33332 21122346778875 355555666678
Q ss_pred eEEEEEceecccC
Q 014977 284 TVHIFSLRVRVVG 296 (415)
Q Consensus 284 ~i~vwd~~~~~~~ 296 (415)
.|..++..+++..
T Consensus 230 ~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 230 AIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEETTTCCCC
T ss_pred eEEEEeCCCCcce
Confidence 8999887766643
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00089 Score=68.27 Aligned_cols=235 Identities=10% Similarity=0.033 Sum_probs=141.9
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..|.++...++|.+.+. +.+.+.+|+..+......... ......+.++....++.+.++... +-|.++
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~~ 283 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMIL 283 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEEE
T ss_pred CceeEEEEcCCCCEEEE-eCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEEE
Confidence 56889988888876654 434888998765332111100 012345778888888877776543 568888
Q ss_pred ECCCCCEEEEEE---------------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEec--------cCCC
Q 014977 120 DDHQSRCIGEFA---------------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET--------LANL 174 (415)
Q Consensus 120 d~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~--------~~~~ 174 (415)
|..+++...... ....|.++...+++.+.+ .++.|..++..+.... .+.. ....
T Consensus 284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSN 362 (781)
T ss_dssp ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSS
T ss_pred CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCC
Confidence 877665432111 135688999998887766 4788999997654332 2211 1112
Q ss_pred cceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE----ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (415)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (415)
..+.++..++++.+.+. ..++-+..++........+ ......|.++...++|.+.+ |+.++. |..+|..+++
T Consensus 363 ~~v~~i~~d~~g~lWig--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~ 438 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIG--TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRLKK 438 (781)
T ss_dssp SCEEEEEECTTSCEEEE--EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSSCE
T ss_pred cceEEEEEcCCCCEEEE--eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCCCc
Confidence 24677777777766543 3344566655544332222 12346788999888887544 666677 9999987765
Q ss_pred EEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 251 RLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 251 ~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.. .+.. ......|.++...++|.+. .|+.. -|..||..+++
T Consensus 439 ~~-~~~~~~~~~~~v~~i~~d~~g~lw-igt~~-Gl~~~~~~~~~ 480 (781)
T 3v9f_A 439 FQ-IIELEKNELLDVRVFYEDKNKKIW-IGTHA-GVFVIDLASKK 480 (781)
T ss_dssp EE-ECCSTTTCCCCEEEEEECTTSEEE-EEETT-EEEEEESSSSS
T ss_pred EE-EeccCCCCCCeEEEEEECCCCCEE-EEECC-ceEEEeCCCCe
Confidence 43 3321 1133579999988887644 45554 48889877654
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=0.0018 Score=60.26 Aligned_cols=228 Identities=7% Similarity=-0.101 Sum_probs=134.1
Q ss_pred CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE
Q 014977 57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA 131 (415)
Q Consensus 57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~ 131 (415)
.+|+.+....|+..+++....... + .....+..+.|++ ++.++.+.... +.|..+++... .....+.
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~--~-~~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEE--E-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEEC
T ss_pred ceeEEeccceeEEEccCCcceeEe--c-cccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEEe
Confidence 466666678888888876443222 2 3445677888886 45555554444 88999987652 2222233
Q ss_pred -ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcC
Q 014977 132 -FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFG 205 (415)
Q Consensus 132 -~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~ 205 (415)
.......+++.+ .+.+.+ ..+.|.+.++........+..... ....++.+|.+..|..+. ...+.|...+.+
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~--~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC--CEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC--CcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 345677888886 344333 467899999865443333332222 345555555433444433 234677777777
Q ss_pred CcceEEEec-CccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 206 LNMIKLINA-HDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 206 ~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
+.....+.. .-.....|++++++..|+.+.. .+. |..+|+........+.....-....+|++. .+.++++-...+
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 766555533 3356789999988777777655 455 999998644333233321122345677773 344555666667
Q ss_pred eEEEEEceecccC
Q 014977 284 TVHIFSLRVRVVG 296 (415)
Q Consensus 284 ~i~vwd~~~~~~~ 296 (415)
.|..++..+++..
T Consensus 312 ~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 312 AIFSANRLTGSDV 324 (400)
T ss_dssp SEEEEESSSCCCC
T ss_pred eEEEEEcCCCCce
Confidence 8888887777644
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00055 Score=69.79 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=144.6
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe-------ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-------LKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
....|.++...++|.+- +|+ ++.|..|+........... -......+.++....++.+.++... +
T Consensus 311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~ 383 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------G 383 (781)
T ss_dssp SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------S
T ss_pred CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------C
Confidence 35679999999988755 455 8889998876533211110 0012345778888887766655433 5
Q ss_pred eEEEEECCCCCEEEEE---E-ccCceeEEEEcCCeEEEE-e-CCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCce
Q 014977 115 KVIIWDDHQSRCIGEF---A-FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS 187 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~---~-~~~~i~~l~~~~~~~~~~-~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (415)
-|..|+..+++..... . ....|.++...+++.+.+ . ++.+..+|..+++... +.. ......+.++..++++.
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC
Confidence 6888886654332111 1 246788999888877766 4 5789999987665432 221 11223567788887777
Q ss_pred EEEEeCCccCeEEEEEcCCcceEEEec-C-----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec--CC
Q 014977 188 VLACPGLQRGQVRIEHFGLNMIKLINA-H-----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR--GV 259 (415)
Q Consensus 188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~-~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~ 259 (415)
+.+.+ ..| +..++........+.. . ...|.++...++|.+.+ |+.++. |..||..+++. ..+.. ..
T Consensus 463 lwigt--~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~l 536 (781)
T 3v9f_A 463 IWIGT--HAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEGF 536 (781)
T ss_dssp EEEEE--TTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTTC
T ss_pred EEEEE--CCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCCC
Confidence 66543 344 5555554443333332 1 35789999999998554 455455 88899766543 34432 11
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
....|.++...++|.+.+ ++.+|.|..||.++++
T Consensus 537 ~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 537 CSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD 570 (781)
T ss_dssp SCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC
T ss_pred CCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc
Confidence 234689999999888554 4557744888766543
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.34 E-value=0.00016 Score=70.98 Aligned_cols=192 Identities=8% Similarity=0.001 Sum_probs=108.3
Q ss_pred CCCEEEEEe-CCcEEEEEc-cCCceeEEEeccCCCe---------eEEEEeeeC-CeE----EEEecCCCCCCCCCeEEE
Q 014977 55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFRC-NIL----ALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~----~l~s~~~d~~~~~~~i~v 118 (415)
++.+++.+. ++.|.-+|. ++++.+.+..+..... ....+...+ ++. +++. ..+ +.|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~-t~d-----g~l~A 135 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLD-----GNVAA 135 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTT-----SEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE-cCC-----CEEEE
Confidence 344444444 688888999 8888877765422110 001122311 222 3333 334 89999
Q ss_pred EECCCCCEEEEEEccC-----ceeE-EEEcCCeEEEE-e-------CCeEEEEEcCCceeeeEEeccCCCcc--------
Q 014977 119 WDDHQSRCIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLRG-------- 176 (415)
Q Consensus 119 wd~~~~~~~~~~~~~~-----~i~~-l~~~~~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~-------- 176 (415)
+|..+|+.+....... .+.+ ..+. ++.+++ . ++.|+.+|.++++.+..+........
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 136 LNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 9999999998876322 2221 1222 455555 2 68999999999999887764321100
Q ss_pred ----------------------------eEEEecCCCceEEEEeCCcc----------------CeEEE-EEcCCcceEE
Q 014977 177 ----------------------------LCCLSHHSSTSVLACPGLQR----------------GQVRI-EHFGLNMIKL 211 (415)
Q Consensus 177 ----------------------------~~~~~~~~~~~~l~~~g~~d----------------g~v~i-~~~~~~~~~~ 211 (415)
-...+.+++..++.+ +..+ +.|.. +..+++.+..
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~-g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF-GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE-ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEE-eCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 001222233333333 2222 24444 4445555555
Q ss_pred EecCcc----------ceEEEEeC-CCC---CEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 212 INAHDS----------HIACFTLT-LDG---LLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 212 ~~~~~~----------~i~~l~~s-p~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
++.... ++. +... .+| ..++.++.+|. ++++|..+|+.+....
T Consensus 294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK 350 (599)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence 543211 121 2222 567 46778899999 9999999999987765
No 269
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.26 E-value=0.00091 Score=60.16 Aligned_cols=227 Identities=9% Similarity=-0.068 Sum_probs=131.5
Q ss_pred EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEE-EEEE-ccC
Q 014977 58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEFA-FRS 134 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~-~~~ 134 (415)
+|+.+....|+..+++.........+ ..-.....+.|++ ++.++.+.... +.|..+++..+... ..+. .-.
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECCS
T ss_pred EEEEEccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCCC
Confidence 55565667788888876432222222 2234566788886 34555554444 89999998765321 1222 234
Q ss_pred ceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977 135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI 209 (415)
Q Consensus 135 ~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~ 209 (415)
....+++.+ ++.+.. ..+.|.++++........+..... ....++.++.+..|..+. ...+.|...+.++...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence 567788886 444433 467899999764332222222222 344555555434444433 2356777777777655
Q ss_pred EEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 210 KLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
..+. ..-...+.|++++++..|+.+.. .+. |..+|+..... ..+... .......+++.. +.++.+-...+.|..
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCce-EEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 5443 23345689999997776666655 455 99999854333 333221 233567777753 345555566788999
Q ss_pred EEceecccC
Q 014977 288 FSLRVRVVG 296 (415)
Q Consensus 288 wd~~~~~~~ 296 (415)
++..+++..
T Consensus 234 ~~~~~G~~~ 242 (318)
T 3sov_A 234 CNKYTGEGL 242 (318)
T ss_dssp EETTTCCSC
T ss_pred EECCCCCce
Confidence 998777643
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.25 E-value=0.00031 Score=62.85 Aligned_cols=190 Identities=9% Similarity=-0.034 Sum_probs=111.5
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEEe---C--CeEEEEEcCCc
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVL---E--HKIYVYSFVDL 162 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~---d--~~i~iwd~~~~ 162 (415)
.....+.+++++.++++.... +.|..||... +....+........+++.+++++++. . ..|..+|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence 345567888888777776554 8999999654 55555556677899999999887662 2 24777787777
Q ss_pred eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc--eEEEe---------cCccceEEEEeCCCCCEE
Q 014977 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM--IKLIN---------AHDSHIACFTLTLDGLLL 231 (415)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~--~~~~~---------~~~~~i~~l~~sp~g~~l 231 (415)
+.......... .........+.+..+++ ...++.|+..+..... +.... ..-...+.| +++++.|
T Consensus 106 ~~~~~~~~~~~-~~~~g~~~~~~~~~~v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 106 TVETLLTLPDA-IFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp CEEEEEECTTC-SCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred eEEEEEeCCCc-cccCcccccCCCcEEEE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 65433322111 11112222333444433 4356777776554321 11111 011233455 7888776
Q ss_pred EEEeC-CCcEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977 232 ATAST-RGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 232 ~s~s~-dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~ 291 (415)
+.+.. .+. |..||+.. ++. ...+.. ......++++++|+++++....+.|.+++..
T Consensus 182 yv~d~~~~~-I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 182 YVSNTEKML-LLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEETTTTE-EEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEeCCCCE-EEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 66554 556 99999864 321 112221 1235678899999887776677889998854
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.0014 Score=61.70 Aligned_cols=240 Identities=8% Similarity=-0.043 Sum_probs=137.0
Q ss_pred CceEEEEEeCC--CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~--g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
.....++|.|+ ...|.++. .+.|+.++.++.... . .. ........+++++++.++++..... .....+...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~-~~-~~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-I-KT-TNIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-E-EC-CCCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-E-ee-cCCCCccEEEECCCCCEEEEcCCCC-cccceEEEEEC
Confidence 34678999995 45555555 678888888654332 2 12 3444577888898877666543210 00012333332
Q ss_pred CCCCE-EEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 122 HQSRC-IGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 122 ~~~~~-~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
..+.. ...+........+++++ ++.+.+ .++.|+.+|..++.....+...........+++++++..|.++-...
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 22211 11222334567788998 777666 46789999987776533332211111233466666666555545566
Q ss_pred CeEEEEEcCC--cc---eEEEecC---------------ccceEEEEe---------CCCCCEEEEEeCCCcEEEEEECC
Q 014977 197 GQVRIEHFGL--NM---IKLINAH---------------DSHIACFTL---------TLDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 197 g~v~i~~~~~--~~---~~~~~~~---------------~~~i~~l~~---------sp~g~~l~s~s~dg~~I~vwd~~ 247 (415)
+.|+..+.+. .. ...+.+. -.....+++ .++|.++++-...+. |+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~- 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP- 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT-
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC-
Confidence 7787755442 11 1222221 123567898 777876666666677 999984
Q ss_pred CCcEEEEEecCCC----------------cccEEEEEeC-CCCCEEEEEeCCCeEEEEEce
Q 014977 248 DGTRLQEVRRGVD----------------RAEIYSIALS-PNVQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 248 ~~~~~~~~~~~~~----------------~~~v~~l~~s-pdg~~l~s~s~dg~i~vwd~~ 291 (415)
+|... ++.+... -.....|+++ ++|.++++-...+.|+.++++
T Consensus 373 ~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66443 4432101 1236789999 677666666667788888764
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.00075 Score=63.52 Aligned_cols=238 Identities=8% Similarity=0.032 Sum_probs=132.8
Q ss_pred ceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECC
Q 014977 46 ELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 46 ~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
....++++| ++..|.++. .+.|+.++.+....... . ........+++++++. ++++...... ....+.+.+ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~--~-~~~~~P~~ia~d~~G~~lyvad~~~~~-~~~~v~~~~-~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV--Y-SGLSKVRTICWTHEADSMIITNDQNNN-DRPNNYILT-R 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE--E-CCCSCEEEEEECTTSSEEEEEECCSCT-TSEEEEEEE-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE--e-cCCCCcceEEEeCCCCEEEEEeCCCCc-ccceEEEEe-C
Confidence 467889998 455666666 67788888876432221 2 3445577888888876 4554332100 001344444 3
Q ss_pred CCCEE--EEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 123 QSRCI--GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 123 ~~~~~--~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
.+... ..+........++++| ++.+.+ .++.|+.++..++.......... ......+++++++.+|.++....
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTT
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCC
Confidence 33222 3333344567888999 677666 46889999987665432222211 12345566677777555555567
Q ss_pred CeEEEEEcCCc--c---eEEEecC---------------ccceE-EEEeC--------CCCCEEEEEeCCCcEEEEEECC
Q 014977 197 GQVRIEHFGLN--M---IKLINAH---------------DSHIA-CFTLT--------LDGLLLATASTRGTLIRIFNTV 247 (415)
Q Consensus 197 g~v~i~~~~~~--~---~~~~~~~---------------~~~i~-~l~~s--------p~g~~l~s~s~dg~~I~vwd~~ 247 (415)
+.|..++.++. . +..+.+. -.... .++.. ++|.++++-...+. |+.++ .
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-~ 369 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-P 369 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-T
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-C
Confidence 78887554432 1 2222221 01122 45543 44655555555666 99998 4
Q ss_pred CCcEEEEEecC---CC---c---------ccEEEEEeCCC-CCEEEEEeCCCeEEEEEce
Q 014977 248 DGTRLQEVRRG---VD---R---------AEIYSIALSPN-VQWLAVASDKGTVHIFSLR 291 (415)
Q Consensus 248 ~~~~~~~~~~~---~~---~---------~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~ 291 (415)
+|+.....-.+ .. . .....|+++|+ +.++++-.....|+.++++
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 66544333210 00 1 14789999995 6565565566788888764
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.0015 Score=64.04 Aligned_cols=108 Identities=6% Similarity=0.030 Sum_probs=62.7
Q ss_pred CCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeE-------EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977 55 DYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRI-------VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (415)
Q Consensus 55 ~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~ 127 (415)
++..++.+.++.|.-+|.++++.+.+.......... ..+... ++.+++.. .+ +.|..+|.++|+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~~~v~~~t-~d-----g~l~AlD~~TG~~~ 140 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GDKVFFGT-LD-----ASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TTEEEEEE-TT-----TEEEEEESSSCCEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-CCEEEEEe-CC-----CEEEEEECCCCCEE
Confidence 444444444455888899888887776653221100 111222 33444433 23 89999999999999
Q ss_pred EEEEccC-----cee-EEEEcCC---e--EEEE-e-------CCeEEEEEcCCceeeeEEe
Q 014977 128 GEFAFRS-----DVR-SVKLSRD---R--IVVV-L-------EHKIYVYSFVDLKLLHQIE 169 (415)
Q Consensus 128 ~~~~~~~-----~i~-~l~~~~~---~--~~~~-~-------d~~i~iwd~~~~~~~~~~~ 169 (415)
....... .+. ...+..+ + .+++ . ++.|+.+|..+++.+....
T Consensus 141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 8887321 121 1112222 2 3444 2 6899999999999887654
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.003 Score=58.76 Aligned_cols=205 Identities=7% Similarity=-0.072 Sum_probs=118.6
Q ss_pred CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~v 118 (415)
...+..++|++....|.... .+.|+.++++... ......+.........++++. .+.++++.... +.|.+
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~-----~~I~~ 185 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSV 185 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC-----CeEEE
Confidence 45678999998766666655 7778888876421 011111212333445566664 44444444443 89999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCC-eEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
.++........+. ......+|++.|. +.+... .+.|...++........+..... ....++.++++..|..+
T Consensus 186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~--~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYWV 263 (400)
T ss_dssp ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS--CEEEEEEETTTTEEEEE
T ss_pred EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC--ceEEEEEEeCCCEEEEE
Confidence 9977655444444 3456789999984 444442 36788888754333222222212 44555555444455555
Q ss_pred CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
-...+.|...+.++.....+... ......+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE 329 (400)
T ss_dssp ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence 55677888877777665555332 2344567663 3345555555667 88888778877666654
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.0027 Score=54.76 Aligned_cols=195 Identities=7% Similarity=0.026 Sum_probs=112.8
Q ss_pred CCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977 41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 41 ~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v 118 (415)
.+-...+..++|+|++..|++.. ++.|...|.. ++......+ .+....-.+++.+++.++++...+ +.+.+
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~-----~~l~~ 95 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERD-----YAIYV 95 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTT-----TEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCC-----CcEEE
Confidence 34445799999999877666544 6666666665 343333334 333445567777888877776555 88999
Q ss_pred EECCCCCE---EEEEE-------ccCceeEEEEcCCe-EE-EE-eCC--eEEEEEc-CCceeeeEEec-------cCCCc
Q 014977 119 WDDHQSRC---IGEFA-------FRSDVRSVKLSRDR-IV-VV-LEH--KIYVYSF-VDLKLLHQIET-------LANLR 175 (415)
Q Consensus 119 wd~~~~~~---~~~~~-------~~~~i~~l~~~~~~-~~-~~-~d~--~i~iwd~-~~~~~~~~~~~-------~~~~~ 175 (415)
+++..... +.... .......|+|+|++ ++ ++ ... .|+.|+- .....+..+.. .....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765542 23332 12345899999876 33 33 222 4555551 11112222211 11222
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCc---------cceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (415)
..+++.+.. +.+++. ...+..+.+.+.+++.+..+.-.. .....|+|.++|++.++ ++.+. +++|.-
T Consensus 176 S~l~~dp~t-g~lliL-S~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~-~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQK-NTLLVL-SHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR-FYRFTP 251 (255)
T ss_dssp CEEEEETTT-TEEEEE-ETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE-EEEEEC
T ss_pred eeEEEcCCC-CeEEEE-ECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce-EEEEEe
Confidence 344444443 234433 456777777888887666554332 25678999999985444 66666 777754
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.15 E-value=0.0012 Score=59.42 Aligned_cols=174 Identities=12% Similarity=0.152 Sum_probs=110.9
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeE-------E-EE---e--CCeEEEEEcC-CceeeeEEec-------cC
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI-------V-VV---L--EHKIYVYSFV-DLKLLHQIET-------LA 172 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~-------~-~~---~--d~~i~iwd~~-~~~~~~~~~~-------~~ 172 (415)
+-+.+||+ +|+.++.+.. +.++.+.+-|+-. + ++ . +++|.+|++. ..+.+..+.. ..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~ 127 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI 127 (355)
T ss_dssp TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC
T ss_pred CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC
Confidence 89999998 9999888764 6677777776431 2 22 4 5789999773 2223444411 11
Q ss_pred CCcceEEEecCC-CceEEEEeCCccCeEEEEEcC--------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977 173 NLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (415)
Q Consensus 173 ~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (415)
....-+|+.-++ .+.+.++....+|.+..|... .+.++.+.. .+.+..+...+....|+.+-++.. |..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-IWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-EEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-EEE
Confidence 222335553233 343334445678888775542 244555554 356788889998889999999988 888
Q ss_pred EECC-----CCcEEEEEecCCCcccEEEEEe--CCCCC-EEEEEe-CCCeEEEEEce
Q 014977 244 FNTV-----DGTRLQEVRRGVDRAEIYSIAL--SPNVQ-WLAVAS-DKGTVHIFSLR 291 (415)
Q Consensus 244 wd~~-----~~~~~~~~~~~~~~~~v~~l~~--spdg~-~l~s~s-~dg~i~vwd~~ 291 (415)
++.+ +++.+..+........+..|++ .++++ +|++++ .++++.+||.+
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8855 3445555433323346888887 56666 566555 57799999986
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00018 Score=72.93 Aligned_cols=245 Identities=9% Similarity=-0.007 Sum_probs=126.1
Q ss_pred CCCCC-ceEEEEEe-CCCCEEEEEe--CC----cEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 41 DVDEI-ELISVSWN-QDYGCFAAGT--SC----GFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 41 ~~h~~-~V~~l~~s-p~g~~la~g~--d~----~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
.+|.- .+...+|| |||++||.+. +| .|+++|++++ +.+ ...+ ......+.|++++..|+....+...
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~---~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKV---SGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCE---EEECSCCEECSSTTEEEEEEECTTC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Cccc---cCceeeEEEecCCCEEEEEEECCCC
Confidence 34443 78899999 9999999766 33 3899999886 421 1111 1112357788887444333322111
Q ss_pred CCCeEEEEECCCCCE--EEEEE--ccCceeEEEEcCCeEEEE------eCCeEEEEEcCCce-ee--eEEe-ccCCCcce
Q 014977 112 PPTKVIIWDDHQSRC--IGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLK-LL--HQIE-TLANLRGL 177 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~-~~--~~~~-~~~~~~~~ 177 (415)
....|.++++.+++. ...+. .......+.|+||++.++ ....|+++|+.++. .. ..+. .... ..
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~--~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG--VR 322 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT--CC
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC--ce
Confidence 113688888877642 23333 234566789999998877 24578899987652 12 2232 2222 11
Q ss_pred EEEecCCCceEEEEeCCcc--C--eEEEEEcCC-cceEE-EecCcc--ceEEEEeCCCCCEEEEEeCCCc-EEEEEEC--
Q 014977 178 CCLSHHSSTSVLACPGLQR--G--QVRIEHFGL-NMIKL-INAHDS--HIACFTLTLDGLLLATASTRGT-LIRIFNT-- 246 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~d--g--~v~i~~~~~-~~~~~-~~~~~~--~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~-- 246 (415)
....+...+.+++. ...+ + .|...+... ..... +..+.. .+..+.+. .+.++++...++. .|.++|+
T Consensus 323 ~s~~~~~g~~l~~~-t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~ 400 (751)
T 2xe4_A 323 YDVQMHGTSHLVIL-TNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADS 400 (751)
T ss_dssp EEEEEETTTEEEEE-ECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCT
T ss_pred EEEeeeeCCEEEEE-eCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccc
Confidence 22221222333333 3333 3 444455442 23233 334433 34555554 3345566666664 2556675
Q ss_pred -----CCCcEEEEEecCCCcccEEEEEe----CCCCC-EEEEEeCC---CeEEEEEceecc
Q 014977 247 -----VDGTRLQEVRRGVDRAEIYSIAL----SPNVQ-WLAVASDK---GTVHIFSLRVRV 294 (415)
Q Consensus 247 -----~~~~~~~~~~~~~~~~~v~~l~~----spdg~-~l~s~s~d---g~i~vwd~~~~~ 294 (415)
.+++....+... ....+..+.+ ++++. ++++.+.. ..++.+|+.+++
T Consensus 401 ~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 401 QDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 344413344321 1122445543 44655 44443333 357777776654
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0053 Score=62.14 Aligned_cols=228 Identities=7% Similarity=-0.103 Sum_probs=128.8
Q ss_pred EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE-
Q 014977 58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA- 131 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~- 131 (415)
+|+......|+..+++....... + .....+..+.++. ++.++++.... +.|+.+++... .....+.
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l--~-~~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR 468 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEE--E-CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred ccccccccceeEeeccCCcceee--e-cCCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec
Confidence 55555566677777765432221 1 3344566777876 45555554444 88988887653 2222233
Q ss_pred ccCceeEEEEcCCe-E-EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC-ccCeEEEEEcCC
Q 014977 132 FRSDVRSVKLSRDR-I-VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFGL 206 (415)
Q Consensus 132 ~~~~i~~l~~~~~~-~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~dg~v~i~~~~~ 206 (415)
.......|++.+.+ + +++ ..+.|.+.++........+..... ....++.++.+..|+++-. ..+.|...+.++
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~--~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC--CcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 33556788888654 3 333 467899999865443333332222 3455555554334444332 236787777777
Q ss_pred cceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE
Q 014977 207 NMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285 (415)
Q Consensus 207 ~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i 285 (415)
.....+.. .-.....|++++.+..|+.+......|..+++........+.....-....+|++..+ +++++-...+.|
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I 625 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 625 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence 76665543 3357889999987777766654433399999854444333332112224557776432 344444556778
Q ss_pred EEEEceecccC
Q 014977 286 HIFSLRVRVVG 296 (415)
Q Consensus 286 ~vwd~~~~~~~ 296 (415)
...+..+++..
T Consensus 626 ~~~dk~tG~~~ 636 (791)
T 3m0c_C 626 FSANRLTGSDV 636 (791)
T ss_dssp EEEETTTCCCC
T ss_pred EEEeCCCCcce
Confidence 88877666544
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.09 E-value=0.002 Score=57.86 Aligned_cols=174 Identities=9% Similarity=-0.087 Sum_probs=107.9
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCe-EEEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEecCCC
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHSS 185 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 185 (415)
..|+..|+...+....+.....+.+++|++.+ .+.. .++.|+.+++.. ......+.........+++.+...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 67899998887766656556678899999754 3333 468999999865 222222222212223344444333
Q ss_pred ceEEEEeCCccCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCC--CcEEEEEECCCCcEEEEEecCCCcc
Q 014977 186 TSVLACPGLQRGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 186 ~~~l~~~g~~dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
.|..+....+.|.+.+..+.....+. ........++++|.+..|+.+... +. |..+++. |.....+... .-.
T Consensus 90 --~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-~~~ 164 (316)
T 1ijq_A 90 --NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ 164 (316)
T ss_dssp --EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred --eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-CCC
Confidence 33333446778888777776555443 344567899999976665555543 56 8888874 5444444321 234
Q ss_pred cEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977 263 EIYSIALSPNVQWLAVAS-DKGTVHIFSLRV 292 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~ 292 (415)
....|++++++..|+.+. ..+.|..+|++.
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 678999999877766554 456899999874
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.09 E-value=0.0019 Score=59.84 Aligned_cols=202 Identities=9% Similarity=-0.087 Sum_probs=114.8
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
..+..++|.+.+..|.... .+.|..++.+....... +.........+++++ .+.++++.... +.|.+.++
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~lY~~d~~~-----~~I~~~~~ 188 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGT-----SRIEVANL 188 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--ECSSCSCCCCEEEETTTTEEEEEETTT-----TEEEECBT
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--EeCCCCCccEEEEEeCCCeEEEEcCCC-----CeEEEEeC
Confidence 4578899998766666555 77888888875432221 112222233455554 34444444433 78888887
Q ss_pred CCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
........+. .-....++++.|.+. +.. .. +.|+.+++.............. ....+++++++..|.++-..
T Consensus 189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~--~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF--WPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS--CEEEEEEEGGGTEEEEEETT
T ss_pred CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC--CeeeEEEeCCCCEEEEEECC
Confidence 6544333333 235678999997543 333 23 7788888754332222222222 34455555444445455556
Q ss_pred cCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 196 RGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
.+.|...+.++.....+. ........|++ ..+.++++-...+. |..+|..+|+.+..+..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEEEcc
Confidence 778888777765544443 23445567777 34445555555666 88888667776666654
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00026 Score=70.63 Aligned_cols=238 Identities=11% Similarity=0.007 Sum_probs=123.6
Q ss_pred EEEEeC-CCCEEEEEe-CC-----------cEEEEEccCCceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 49 SVSWNQ-DYGCFAAGT-SC-----------GFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 49 ~l~~sp-~g~~la~g~-d~-----------~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
++++.+ ++++++.|+ +. .+.+||..+........+. ..........+..++.+++.|+.+ +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~----~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----AK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----TT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC----CC
Confidence 566777 888888886 32 4778888765432211111 122222234556677777777643 26
Q ss_pred eEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEEe----C-----CeEEEEEcCCceeeeEE----eccCCCcceEE
Q 014977 115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVVL----E-----HKIYVYSFVDLKLLHQI----ETLANLRGLCC 179 (415)
Q Consensus 115 ~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~~----d-----~~i~iwd~~~~~~~~~~----~~~~~~~~~~~ 179 (415)
.+.+||..+++....-. ....-.++.+.+++++++. + ..+.+||..+.+-...- .........
T Consensus 266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-- 343 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-- 343 (656)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--
T ss_pred ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc--
Confidence 89999988775443222 1222245566667776662 1 46899998776533210 000000000
Q ss_pred EecCCCceEEEEeCCccCe---------EEEEEcCCcc-eEEEecCc---------cceEEEEeC-CCCCEEEEEeCCC-
Q 014977 180 LSHHSSTSVLACPGLQRGQ---------VRIEHFGLNM-IKLINAHD---------SHIACFTLT-LDGLLLATASTRG- 238 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~---------v~i~~~~~~~-~~~~~~~~---------~~i~~l~~s-p~g~~l~s~s~dg- 238 (415)
.....++..+++ |..+|. +..|+..... ......+. ..-.++.|. .++++++.|+.++
T Consensus 344 ~~~~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 344 GLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp GGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred ceeecCCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 011122233333 333443 3444444322 11111111 122344443 3778888887542
Q ss_pred ----------cEEEEEECCCCcEEEEEecCCCccc-EEEEEeCCCCCEEEEEeCC-----------CeEEEEEceecc
Q 014977 239 ----------TLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALSPNVQWLAVASDK-----------GTVHIFSLRVRV 294 (415)
Q Consensus 239 ----------~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~d-----------g~i~vwd~~~~~ 294 (415)
. |.+||..+.+-............ -.+++..|++++++.|+.+ ..+.+||..+++
T Consensus 423 ~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 423 QDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 5 88888877665433201101111 2344566899999998854 457888877654
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.08 E-value=0.0036 Score=57.07 Aligned_cols=201 Identities=9% Similarity=-0.067 Sum_probs=113.5
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
..+..++|++....|.... .+.|..++++......... ........+++++ ++.++++.... +.|.+.++
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~ 145 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGT-----SRIEVANL 145 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCC-----CeEEEEcC
Confidence 3468899998766666555 7788888887543222111 2222234455554 44444444443 78999997
Q ss_pred CCCCEEEEEE-ccCceeEEEEcCC-eEEEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFA-FRSDVRSVKLSRD-RIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
........+. .-....+++++|. +.+.. .. +.|+.+++.... ...+.. ........+++++++..|..+-..
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD-THLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEE-CCCCCcceEEEeCCCCEEEEEECC
Confidence 6544333332 3356789999984 44444 23 778888875432 222211 111234556666444445454556
Q ss_pred cCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 196 RGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+.|...+.++.....+. ........|++ .++.++++-...+. |..+|..+|+.+..+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCe-EEEEEccCCCccEEec
Confidence 778888777775544433 33345567777 34444444445556 7777766666555554
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.07 E-value=0.0059 Score=55.06 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=119.2
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEe-c--cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD-L--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd 120 (415)
...+.+|.|.+++..+++|..+.| |............ + ......+..+.+.++..+ +.+. . +.|..-
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~-~-----g~i~~S- 104 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGW-IVGE-P-----PIMLHT- 104 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEE-EEEE-T-----TEEEEE-
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEE-EEEC-C-----CeEEEE-
Confidence 346999999988888887767654 3333333333222 1 122446777888775444 4332 2 544432
Q ss_pred CCCCCEEEEEE----ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 121 DHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 121 ~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
...|+.-.... +...+..+.+.+++..++ .++.|+.- ...++.-...... ....+..+.+.+++.++++ +
T Consensus 105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~-g- 180 (327)
T 2xbg_A 105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV-S- 180 (327)
T ss_dssp SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE-E-
T ss_pred CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE-E-
Confidence 23343322222 234567777766665555 34544321 1223222222211 1124556666667777655 4
Q ss_pred ccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeC
Q 014977 195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS 270 (415)
Q Consensus 195 ~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s 270 (415)
.+|.+.. ++..+..-..+ ......+..+.+.+++++++ ++.+|. +++.+...++.-..+... .....+.++.+.
T Consensus 181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 4566655 44323322222 23456788899999987664 455777 777643224433223221 122358899999
Q ss_pred CCCCEEEEEeCCCeE
Q 014977 271 PNVQWLAVASDKGTV 285 (415)
Q Consensus 271 pdg~~l~s~s~dg~i 285 (415)
+++.+++++. +|.|
T Consensus 259 ~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL 272 (327)
T ss_dssp SSSCEEEEES-TTCE
T ss_pred CCCEEEEEeC-CCeE
Confidence 8887766654 6655
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.06 E-value=0.0083 Score=59.23 Aligned_cols=227 Identities=7% Similarity=-0.074 Sum_probs=136.2
Q ss_pred CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-cC
Q 014977 57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-RS 134 (415)
Q Consensus 57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-~~ 134 (415)
.+|+.+..+.|+..++++........+ .+-.....+.|++ ++.++.+.... +.|..+++........+.. ..
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCCC
Confidence 356666778899999986543332222 2334577888887 45555555444 8999999765544333432 24
Q ss_pred ceeEEEEcCC-eEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977 135 DVRSVKLSRD-RIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI 209 (415)
Q Consensus 135 ~i~~l~~~~~-~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~ 209 (415)
....|++.+. +++ ++ ..+.|.+.++........+.... .....++.+|....|..+- ...+.|...+.++...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l--~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL--DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSC--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC--CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence 5778888754 333 33 45789999986433222222222 2345666665433444432 2355677677777666
Q ss_pred EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
..+...-.....|++++++..|+.+......|..+|+..... ..+.. ......+|++.. +.++++-...+.|...|
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 665555567789999998777776665443399999865443 33333 223456787765 44444555577888888
Q ss_pred ceeccc
Q 014977 290 LRVRVV 295 (415)
Q Consensus 290 ~~~~~~ 295 (415)
..+++.
T Consensus 235 k~tg~~ 240 (628)
T 4a0p_A 235 KTSGQN 240 (628)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 666653
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0042 Score=58.93 Aligned_cols=249 Identities=7% Similarity=-0.021 Sum_probs=134.1
Q ss_pred ceEEEEEeC-CCCEEEEEe--CCcEEEEEccCCceeEEEecc-CCCeeEEEEee-------eCCeE-EEEecCCCCC-CC
Q 014977 46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLK-SGGFRIVEMLF-------RCNIL-ALVGAGDNSQ-YP 112 (415)
Q Consensus 46 ~V~~l~~sp-~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~-~l~s~~~d~~-~~ 112 (415)
....|+|.| +...|.++. .+.|++.|.+........... ..-.....++| ++++. ++++...+.. ..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 578999999 455555555 456777777764433222211 12235777888 88775 4444332100 00
Q ss_pred CCeEEEEECCC-CCEE-----EEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcC-------Ccee-----------
Q 014977 113 PTKVIIWDDHQ-SRCI-----GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-------DLKL----------- 164 (415)
Q Consensus 113 ~~~i~vwd~~~-~~~~-----~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~-------~~~~----------- 164 (415)
...|.+.+... ++.. ..+..-.....++++| ++.+.+ .++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 02366665333 2221 2232223456788899 455444 57889999987 5543
Q ss_pred eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ce---EEEecC---c------------cceE-EEE
Q 014977 165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MI---KLINAH---D------------SHIA-CFT 223 (415)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~---~~~~~~---~------------~~i~-~l~ 223 (415)
...+...........+++++++..|.++-.....|+..+.++. .+ ..+-+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1122111111234566667777654444456677777444332 11 223221 0 1233 444
Q ss_pred eC-------CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-------------Cc---------ccEEEEEeCCC-C
Q 014977 224 LT-------LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DR---------AEIYSIALSPN-V 273 (415)
Q Consensus 224 ~s-------p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~---------~~v~~l~~spd-g 273 (415)
.. ++|.++++=..+.. |+.++ .+|.. .++.+.. .. .....|+++++ |
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EccccccccCCCeEEEEECCCCE-EEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 54 45666665556667 99998 56744 4443310 01 24678999997 7
Q ss_pred CEEEEEeCCCeEEEEEceecccCC
Q 014977 274 QWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
.++++=+....|+.++++......
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC---
T ss_pred EEEEEeCCCCEEEEEECCCCcccc
Confidence 766666677899999998776543
No 286
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.99 E-value=0.0074 Score=53.37 Aligned_cols=229 Identities=16% Similarity=0.174 Sum_probs=146.9
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC-CCE
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ-SRC 126 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~ 126 (415)
+.-.+|..+.+|.-....+.|+|+++..++....+ ...+.-+.|-. +...+++. ..|.-|++.. ..+
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~---~e~VvfWkWis~~~L~lVT~--------taVyHWs~~~~s~P 139 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP 139 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC---SSCEEEEEECSSSEEEEEES--------SEEEEEESSTTCCC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec---CCccEEEEecCCCeEEEEcC--------CcEEEEcccCCCCC
Confidence 44568888888877788899999999776665554 34677777755 56667774 7899999864 466
Q ss_pred EEEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC--CC-ceE
Q 014977 127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH--SS-TSV 188 (415)
Q Consensus 127 ~~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~ 188 (415)
++.+. | ...|..-..+++.++++ ..|.+.+|..+. +..+.+++|.. ....+... +. ..+
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa--~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA--SFAQFKMEGNAEESTL 216 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEE--EEEEECCTTCSSCEEE
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeee--eeEEEecCCCCCCceE
Confidence 66666 2 45677778889888776 247888999754 45556666654 22222222 11 123
Q ss_pred EEEe--CCccCeEEEEEcCCc----c---eEEE---e---cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 189 LACP--GLQRGQVRIEHFGLN----M---IKLI---N---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 189 l~~~--g~~dg~v~i~~~~~~----~---~~~~---~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
++++ +...+.++|-..... . .+.. . ...+-..++..++.-..+..-+.-|. |++||+.++.++.
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~-ihlyDleTgt~i~ 295 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcE-EEEEEcccCcEEE
Confidence 3321 111256666443211 1 0111 1 12334457777877778888899999 9999999999998
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.-+- ....|..-+-+.+..=++.....|.|.--.+++..
T Consensus 296 ~nrI--S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 296 MNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEC--CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred Eecc--CCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 7765 44566655555554556666788877776666554
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.96 E-value=0.0071 Score=52.16 Aligned_cols=198 Identities=10% Similarity=0.119 Sum_probs=119.5
Q ss_pred eccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE---eCCeEE
Q 014977 82 DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV---LEHKIY 155 (415)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~---~d~~i~ 155 (415)
.+.+-...+..++++++ +.+++....+ +.|...|.. ++.++.+... .....|++.+++.+++ .++.+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 45455556888999975 4455444444 899999987 9988888743 5788999999988866 467899
Q ss_pred EEEcCCcee---eeEEec----cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC----cceEEEec-------Ccc
Q 014977 156 VYSFVDLKL---LHQIET----LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINA-------HDS 217 (415)
Q Consensus 156 iwd~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~~-------~~~ 217 (415)
++++..... +..... .......-.+++++.+..|.++. ......++..++ ..+..+.. +..
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 998855432 222221 11122345666666553343323 333334433322 12222211 233
Q ss_pred ceEEEEeCCCCCE-EEEEeCCCcEEEEEECCCCcEEEEEecC--CC-----cccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 218 HIACFTLTLDGLL-LATASTRGTLIRIFNTVDGTRLQEVRRG--VD-----RAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 218 ~i~~l~~sp~g~~-l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~-----~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
.+.+++++|.... ++....... +.++|. .|+.+..+.-. .+ -...-.|+|.++|+ |+..++.+.+++|.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~-L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRA-LQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTE-EEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEECCCCe-EEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 5689999996554 444555555 999996 56666555431 11 12568999999998 45557777666654
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.91 E-value=0.0015 Score=65.05 Aligned_cols=233 Identities=9% Similarity=-0.042 Sum_probs=120.3
Q ss_pred CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCCCeEEEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVIIWD 120 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~~~i~vwd 120 (415)
.....++++..+++++++|+ +..+.+||..+..-.....+...... ..+...+++.+++.|+ .+.......+.+||
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 33444677889999999998 56799999876543222222121111 2333445666666666 33222235799999
Q ss_pred CCCCCEEEEE----E-c-----------cCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC-------Cc
Q 014977 121 DHQSRCIGEF----A-F-----------RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-------LR 175 (415)
Q Consensus 121 ~~~~~~~~~~----~-~-----------~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-------~~ 175 (415)
..+++....- . . ...+..+-. .++..+. ....+..||..+............ +.
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred CCCCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence 8887644320 0 0 011111111 1222222 245788899877654333222111 11
Q ss_pred ceEEEec-CCCceEEEEeCCccC-----------eEEEEEcCCcceEEEe---cCccc-eEEEEeCCCCCEEEEEeCC--
Q 014977 176 GLCCLSH-HSSTSVLACPGLQRG-----------QVRIEHFGLNMIKLIN---AHDSH-IACFTLTLDGLLLATASTR-- 237 (415)
Q Consensus 176 ~~~~~~~-~~~~~~l~~~g~~dg-----------~v~i~~~~~~~~~~~~---~~~~~-i~~l~~sp~g~~l~s~s~d-- 237 (415)
...++.+ ..+++++++ |+.++ .|.+++.....-..+. ..... -.+++..|+|++++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp TCEEEEEETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCceEeccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 1222221 224566666 44322 3444554443333322 11222 2355667899999998854
Q ss_pred ---------CcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeC
Q 014977 238 ---------GTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASD 281 (415)
Q Consensus 238 ---------g~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~ 281 (415)
.. +.+||..+.+-.. +.. ...........+.|||++++.|+.
T Consensus 479 ~~~~~~~~~~~-v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccc-eEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45 8999987765432 221 101112234556799999999885
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.91 E-value=0.0066 Score=54.50 Aligned_cols=202 Identities=11% Similarity=-0.015 Sum_probs=113.9
Q ss_pred ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECC
Q 014977 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDH 122 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~ 122 (415)
.+.+++|.+....|.... .+.|..++.+........ +...-.....+++.+ .+.++++-... +.|.++++.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~~~l~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~d 109 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSGLLSPDGLACDWLGEKLYWTDSET-----NRIEVSNLD 109 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-EEECCSCCCEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-EcCCCCCccEEEEEcCCCeEEEEECCC-----CEEEEEECC
Confidence 467889998666665555 778888888754211110 101111233455553 44444444433 889999976
Q ss_pred CCCEEEEEE-ccCceeEEEEcCC-eEEEE-e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 123 QSRCIGEFA-FRSDVRSVKLSRD-RIVVV-L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 123 ~~~~~~~~~-~~~~i~~l~~~~~-~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
.......+. .......+++.|. +.+.. . .+.|+.+++.. .....+.. ........+++++++..|..+-...
T Consensus 110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEE-CCCCCccEEEEeccCCEEEEEECCC
Confidence 543332232 3456789999985 44333 2 46788888753 32222211 1112345566665444555555567
Q ss_pred CeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 197 GQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 197 g~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
+.|...+.++...+.+.. .......+++.. +.++.+-...+. |..+|..+|+....+..
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIHS 247 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEeC
Confidence 888887777755554432 344556777743 334445445566 88888877776655543
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.81 E-value=0.02 Score=52.65 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=147.9
Q ss_pred EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCC-CCE
Q 014977 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQ-SRC 126 (415)
Q Consensus 49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~ 126 (415)
+.-.+|..+.+|.=....+.|||+++..++....+ ...++-+.|- ++...+++. ..|.-|++.. ..+
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~---~e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~P 138 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP 138 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEEEETTEEEEECS--------SEEEEEESSSSCCC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec---CCCceEEEecCCCeEEEEcC--------CeeEEecccCCCCc
Confidence 45567888888876688999999998776665554 2245566664 566677773 7899999864 456
Q ss_pred EEEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEE
Q 014977 127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLA 190 (415)
Q Consensus 127 ~~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 190 (415)
++.+. | ...|..-..+++.++++ ..|.+.+|..+. +..+.+++|........+.-++... +++
T Consensus 139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 217 (494)
T 1bpo_A 139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFC 217 (494)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEE
Confidence 66666 2 45677778889988876 257788998754 4455666665422211121122112 222
Q ss_pred EeC--CccCeEEEEEcCCc-----c--eEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977 191 CPG--LQRGQVRIEHFGLN-----M--IKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (415)
Q Consensus 191 ~~g--~~dg~v~i~~~~~~-----~--~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (415)
++. ...+.++|-..... . .+... ...+-..++..++.-..+..-+.-|. |++||+.++.++..-
T Consensus 218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN 296 (494)
T ss_dssp EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeeee
Confidence 211 12256777443221 1 11111 12334557888887778888899999 999999999999877
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+- ....|..-+-+....=++.....|.|.--.+++..
T Consensus 297 rI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 297 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 65 45567666665555556677788977777766554
No 291
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.80 E-value=0.0014 Score=68.83 Aligned_cols=221 Identities=11% Similarity=0.146 Sum_probs=144.1
Q ss_pred CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC
Q 014977 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR 143 (415)
Q Consensus 64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~ 143 (415)
...|.|.|+.......++.. ..-+...+|...+++--.. ..+.|+|+++.+.++.+.....|.--.|-.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALrag------~~lQiFnl~~k~klks~~~~e~VvfWkWis 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEecC------CeEEEeehHHhhhhcccccCCCceEEEecC
Confidence 44688888887555444333 2222334565555554432 899999999999999888877887777755
Q ss_pred C-eEEEEeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeCC------ccCeEEEEEcCCcceEEEe
Q 014977 144 D-RIVVVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN 213 (415)
Q Consensus 144 ~-~~~~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~v~i~~~~~~~~~~~~ 213 (415)
+ ..-++.+..|+-|++.. ..+.+.+..|. ....++.+..+++.++++..|- -.|.+.++....+..+.+.
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie 195 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE 195 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence 4 44455999999999963 34444444332 2346778888888888876653 4578888888888888888
Q ss_pred cCccceEEEEeCC--C-CCEEEEEeC---CCcEEEEEECCCC---cEE-----EE--EecCCCcccEEEEEeCCCCCEEE
Q 014977 214 AHDSHIACFTLTL--D-GLLLATAST---RGTLIRIFNTVDG---TRL-----QE--VRRGVDRAEIYSIALSPNVQWLA 277 (415)
Q Consensus 214 ~~~~~i~~l~~sp--~-g~~l~s~s~---dg~~I~vwd~~~~---~~~-----~~--~~~~~~~~~v~~l~~spdg~~l~ 277 (415)
+|.+....+.... . ..+++.+.. .+. ++|-++... ... .. +.......-..++..++.-..+.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 8877766555432 1 234443332 245 888888432 111 01 11100112334677788778888
Q ss_pred EEeCCCeEEEEEceecccC
Q 014977 278 VASDKGTVHIFSLRVRVVG 296 (415)
Q Consensus 278 s~s~dg~i~vwd~~~~~~~ 296 (415)
..+.-|.|++||+.++.+.
T Consensus 275 ~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEecCceEEEEecccchhh
Confidence 9999999999999999864
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.69 E-value=0.036 Score=56.12 Aligned_cols=204 Identities=7% Similarity=-0.099 Sum_probs=112.0
Q ss_pred CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEE
Q 014977 44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVII 118 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~v 118 (415)
...+..|+|.+....|.... .+.|+.++++.... .....+...-.....++++.. +.++++-... +.|.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~-----~~I~v 497 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSV 497 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCC-----CeEEE
Confidence 45578899998666665555 67788888764211 111112112222334455532 2444444433 89999
Q ss_pred EECCCCCEEEEEE-ccCceeEEEEcCC-eEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977 119 WDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
.++........+. ......+|++.|. +.+... .+.|.+.++........+..... ....++.++.+..|+++
T Consensus 498 ~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~--~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYWV 575 (791)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--CEEEEEEETTTTEEEEE
T ss_pred EeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC--CceEEEEecCCCeEEEE
Confidence 9976554433333 3456889999986 444442 26788888864433333332222 44455555433344444
Q ss_pred CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEec
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
-...+.|...+..+.....+... -.....|++. +..|+.+. ..+. |...|..+|+.+..+..
T Consensus 576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~-I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA-IFSANRLTGSDVNLLAE 641 (791)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE-EEEEeCCCCcceEEeec
Confidence 45567788877777665555432 2234466663 33455444 4455 88888778876656543
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=0.0074 Score=56.67 Aligned_cols=152 Identities=7% Similarity=-0.008 Sum_probs=92.8
Q ss_pred ceeEEEEcC--CeEEEE-e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC----eEEEEEcCC
Q 014977 135 DVRSVKLSR--DRIVVV-L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGL 206 (415)
Q Consensus 135 ~i~~l~~~~--~~~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~ 206 (415)
....|+++| ++.+.+ . .+.|+.+|+..++...... .. .....+++++++..|+++...++ .+.+....+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 457889997 355444 2 3789999987765443333 22 24566777777775555443222 233344333
Q ss_pred cce--EEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-EeCC
Q 014977 207 NMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-ASDK 282 (415)
Q Consensus 207 ~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-~s~d 282 (415)
... ..+.. ......++++| +|.++++-..++. |..++...+......... .......|+|+|+|++|+. -...
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTT
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCC
Confidence 322 23332 33456788999 7776666666777 999998766543233321 2235678999999995554 4566
Q ss_pred CeEEEEEcee
Q 014977 283 GTVHIFSLRV 292 (415)
Q Consensus 283 g~i~vwd~~~ 292 (415)
+.|..++.+.
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 7899988764
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.65 E-value=0.0094 Score=53.09 Aligned_cols=152 Identities=4% Similarity=0.012 Sum_probs=101.8
Q ss_pred EEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC---------ceeEEEE---cCCeEEEE--e----
Q 014977 90 IVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS---------DVRSVKL---SRDRIVVV--L---- 150 (415)
Q Consensus 90 ~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~---------~i~~l~~---~~~~~~~~--~---- 150 (415)
.-+..|+. ++.++++.-.. +.|..|+...+..... .... .+..|.+ .+++++++ .
T Consensus 15 PE~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CSCEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CcCccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33566765 66777776555 9999999876654433 3221 4578999 68887776 2
Q ss_pred ----------CCeEEEEEcC---CceeeeEEecc--C---------CCcceEEEecCCCceEEEEeCCcc-CeEEEEEcC
Q 014977 151 ----------EHKIYVYSFV---DLKLLHQIETL--A---------NLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFG 205 (415)
Q Consensus 151 ----------d~~i~iwd~~---~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i~~~~ 205 (415)
+..+..||+. +++.+...... . .......+..+++|...++ ++.. +.|...+.+
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCC
Confidence 4779999998 78777655421 1 1124667888888876654 4455 666666666
Q ss_pred CcceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977 206 LNMIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (415)
Q Consensus 206 ~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (415)
++.+..+... ....+.|+++|+|.+|++....+. |..+|+.+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p 216 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP 216 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence 6544433211 223668999999998888877888 999998743
No 295
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.62 E-value=0.0017 Score=65.89 Aligned_cols=198 Identities=9% Similarity=0.029 Sum_probs=106.3
Q ss_pred eEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCCC-CEEEEEEccCceeEEEEcCCeEEEE---eC-----CeEEEEE
Q 014977 89 RIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYS 158 (415)
Q Consensus 89 ~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d-----~~i~iwd 158 (415)
.+..+.|+ ||+..++-..+...-....|+++|+.++ +.+.. ........+.|+||++.++ .+ ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 67788999 9987666332210001146999999998 63211 0111245688999986665 33 3688899
Q ss_pred cCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCc--cCeEEEEEcCCc--ce--EEEe-cCccceEEEEeCCCCC
Q 014977 159 FVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHFGLN--MI--KLIN-AHDSHIACFTLTLDGL 229 (415)
Q Consensus 159 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~v~i~~~~~~--~~--~~~~-~~~~~i~~l~~sp~g~ 229 (415)
+.+++. ...+..... .....+.+++++++|++.... ...|.+.+.... .. ..+. .......++.|+..+.
T Consensus 254 lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred CCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 877642 223332222 234566777888877765422 334555555432 22 3332 3344556666554444
Q ss_pred EEEEEeCC----CcEEEEEECCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977 230 LLATASTR----GTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (415)
Q Consensus 230 ~l~s~s~d----g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~ 290 (415)
+++....+ .. |..+|+.++..... +..+.....+..+.+. .+.++++...++..+||-+
T Consensus 333 l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 333 LVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 44554443 24 77778765322122 2221122245666665 3345566777786554443
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.56 E-value=0.00031 Score=70.42 Aligned_cols=226 Identities=8% Similarity=-0.081 Sum_probs=117.0
Q ss_pred EEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC----CCEEEEEE-c
Q 014977 59 FAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFA-F 132 (415)
Q Consensus 59 la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~-~ 132 (415)
|+....+.|++.++++.... ..+ .....+..+.|++ .+.++++.... +.|..+++.. ......+. .
T Consensus 380 ll~~~~~~I~~id~~~~~~~--~~~-~~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~~~ 451 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYT--SLI-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRD 451 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEE--CCS-CCCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCCSC
T ss_pred EEecCccceEEEeCCCCcce--eee-ccCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEeCC
Confidence 33334556677776653321 111 2222345666776 44555554443 7898998765 12111111 1
Q ss_pred cCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-cCeEEEEEcCCc
Q 014977 133 RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-RGQVRIEHFGLN 207 (415)
Q Consensus 133 ~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-dg~v~i~~~~~~ 207 (415)
......|++.+ .+.+.+ ..+.|.++++........+..... ....++.++.+..|+++... .+.|...+..+.
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~--~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC--CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC--CcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 12345677774 344433 467899999765433322222212 23344555544444443322 256776555555
Q ss_pred ceEEEe-cCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 208 MIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 208 ~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
....+. ..-.....|+|+|++..|+.+. ..+. |.++|+..... ..+.. .........|++..+ .++++....+.
T Consensus 530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~ 606 (699)
T 1n7d_A 530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 606 (699)
T ss_dssp CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence 444442 2234567899999766555544 4556 99999864333 33322 111123445666544 44455556678
Q ss_pred EEEEEceecccCC
Q 014977 285 VHIFSLRVRVVGE 297 (415)
Q Consensus 285 i~vwd~~~~~~~~ 297 (415)
|..++..+++...
T Consensus 607 V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 607 IFSANRLTGSDVN 619 (699)
T ss_dssp EEEEETTTEEEEE
T ss_pred EEEEEccCCCceE
Confidence 9999987766543
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.55 E-value=0.078 Score=52.28 Aligned_cols=200 Identities=9% Similarity=-0.092 Sum_probs=116.1
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD 121 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~ 121 (415)
..+..++|++.+..|..+. ++.|..++++......... ..-.....++++. .+.++++.... +.|.+.++
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--~g~~~P~GlAvD~~~~~LY~tD~~~-----~~I~v~~~ 109 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGT-----NRIEVSKL 109 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--CCCCCcceEEEEeCCCEEEEEECCC-----CEEEEEec
Confidence 4578999999777776665 7888888877533222211 2212233444443 23344444333 88999997
Q ss_pred CCCCEEEEEE-ccCceeEEEEcC-CeEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 122 HQSRCIGEFA-FRSDVRSVKLSR-DRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
........+. .-....+|++.| .|.+... .+.|...++...... .+... ......++.++++..|..+-..
T Consensus 110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~--~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPN--VGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECS--CSSEEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECC--CCCcceEEEccccCEEEEEECC
Confidence 6544322232 345678999998 4555442 467888887543332 22222 2244556666554445555556
Q ss_pred cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+.|...+.++.....+.........+++.. +.++++-...+. |...|..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 187 TNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTIIQ 245 (628)
T ss_dssp TTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEEe
Confidence 7788887777655555554445556777765 444444444666 9999987776544444
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.38 E-value=0.0072 Score=56.82 Aligned_cols=152 Identities=9% Similarity=0.072 Sum_probs=89.1
Q ss_pred ceeEEEEcCC---eEEEEe--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc---Ce-EEEEEcC
Q 014977 135 DVRSVKLSRD---RIVVVL--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQ-VRIEHFG 205 (415)
Q Consensus 135 ~i~~l~~~~~---~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~-v~i~~~~ 205 (415)
....|+++|+ +.+.+. .+.|+.+|..+++...... .. .....+++++++.++++ .... .. +......
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECCCCCEEEE-cCCCCcccceEEEEECC
Confidence 3568999984 666553 3789999987776554333 22 24556666777764433 3211 11 2222222
Q ss_pred Ccce--EEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eC
Q 014977 206 LNMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SD 281 (415)
Q Consensus 206 ~~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~ 281 (415)
.... ..+. .......++++| +|.++++-..++. |+.+|..++.....+...........|+|+|+|++|+.+ ..
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2111 1222 234456788999 7776666556777 999998878763333221122233579999999955544 45
Q ss_pred CCeEEEEEcee
Q 014977 282 KGTVHIFSLRV 292 (415)
Q Consensus 282 dg~i~vwd~~~ 292 (415)
.+.|+.++++.
T Consensus 294 ~~~I~~~~~d~ 304 (433)
T 4hw6_A 294 KHCIYRVDYNR 304 (433)
T ss_dssp TTEEEEEEBCT
T ss_pred CCEEEEEeCCC
Confidence 67888888763
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.37 E-value=0.069 Score=52.56 Aligned_cols=227 Identities=9% Similarity=-0.076 Sum_probs=121.0
Q ss_pred EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCE-EEEEEc-cC
Q 014977 58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC-IGEFAF-RS 134 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~~-~~ 134 (415)
+|.-+..+.|+..+++.......... ..-.....+.|++ ++.++.+-... +.|..+++..... ...+.. -.
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~~~ 84 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLL 84 (619)
T ss_dssp CEEEECSSBEEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSSCS
T ss_pred eEEEeccccEEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCCCC
Confidence 45555677888888875321222222 3334567788886 45555554443 8898888765432 222222 25
Q ss_pred ceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977 135 DVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI 209 (415)
Q Consensus 135 ~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~ 209 (415)
....|++.+. +++.. ..+.|.+.++........+..... ....++.+|.+..|.++. ...+.|.....++...
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~--~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--CCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCC--CCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 7889999874 44433 468899999865332222222222 233444444433344432 2245666666676655
Q ss_pred EEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 210 KLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
..+. ..-.....|++++++..|+.+.. .+. |..+|+.. .....+... ......+|++..+ ...++-...+.|..
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG-~~~~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG-TNRQAVVKG-SLPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSC-CEEC----------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCC-CccEEEEeC-CCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 5543 33456789999997666666554 456 99999854 333333211 1122356777655 44444445677888
Q ss_pred EEceecccC
Q 014977 288 FSLRVRVVG 296 (415)
Q Consensus 288 wd~~~~~~~ 296 (415)
.|..+++..
T Consensus 239 ~d~~tg~~~ 247 (619)
T 3s94_A 239 CNKYTGEGL 247 (619)
T ss_dssp EESSSCCCC
T ss_pred EECCCCccc
Confidence 888777643
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.35 E-value=0.00051 Score=68.86 Aligned_cols=203 Identities=8% Similarity=-0.074 Sum_probs=108.5
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEE
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW 119 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vw 119 (415)
..+..++|.+.+..|.... .+.|+.++++... ......+.........+++.. .+.++++.... +.|.++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~-----~~I~v~ 480 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSVA 480 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT-----SCEEEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC-----CeEEEE
Confidence 3466889998777777666 6788888887410 001111111111223345542 34444443333 789999
Q ss_pred ECCCCCEEEEEE-ccCceeEEEEcCCe-EEEEe----CCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEe
Q 014977 120 DDHQSRCIGEFA-FRSDVRSVKLSRDR-IVVVL----EHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACP 192 (415)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~l~~~~~~-~~~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 192 (415)
++........+. .......|++.|.+ .+++. .+.|+++++... ....+ ..... ....+++++++..|.++
T Consensus 481 d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~--~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 481 DTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQ--WPNGITLDLLSGRLYWV 557 (699)
T ss_dssp BSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCS--SCCCEEECTTTCCEEEE
T ss_pred ecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCC--CccEEEEeccCCEEEEE
Confidence 976544333333 23456788998854 33332 267877776432 22222 11111 22334444433334444
Q ss_pred CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977 193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (415)
Q Consensus 193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (415)
-...+.|...+..+...+.+... ......|++..+ .++++....+. |..+|..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence 45677888877776555544321 123345555443 34444445567 99999888887766654
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.32 E-value=0.041 Score=49.45 Aligned_cols=190 Identities=8% Similarity=-0.050 Sum_probs=105.4
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
...+..+.+.+++..++++.++. ||...................+..+.+.+++.+++.+... +..+-+| ..
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G-----~~~~S~d-~g 192 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG-----SFYSTWE-PG 192 (327)
T ss_dssp SSCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS-----SEEEEEC-TT
T ss_pred CCCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC-----cEEEEeC-CC
Confidence 34578888888888777776664 4444333333333322334467788888888777766542 3333333 21
Q ss_pred CCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccC
Q 014977 124 SRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 124 ~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (415)
++.-..+. ....+..+.+.+++.+++ .+|.+++.+...++.-..+... .....+..+.+.+++.++++ + .++
T Consensus 193 G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g-~~g 270 (327)
T 2xbg_A 193 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-G-GAG 270 (327)
T ss_dssp CSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-E-STT
T ss_pred CCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-e-CCC
Confidence 32222222 456788899988887666 5677777642223332222211 11123556666666666655 4 367
Q ss_pred eEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977 198 QVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (415)
Q Consensus 198 ~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (415)
.+..-...++.-..+.. ....+..+.|.++++ +++++.+|. |.-++
T Consensus 271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~-i~~~~ 319 (327)
T 2xbg_A 271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI-LLRYV 319 (327)
T ss_dssp CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE-EEEEC
T ss_pred eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce-EEEEc
Confidence 67542222333222321 235678888875554 666677888 76665
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.21 E-value=0.12 Score=46.94 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC----eEEEEecCCCCCCCCCeEE
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGDNSQYPPTKVI 117 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~d~~~~~~~i~ 117 (415)
..-..++|.|+|+++++-..+.|.+++ +. .......+ .........++++++ +.++++......-..+.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999966665588888888 32 22111111 123456788899997 4444443211000014677
Q ss_pred EEECCCCCE-----E-EEEEc----cCceeEEEEcCCeEEEE
Q 014977 118 IWDDHQSRC-----I-GEFAF----RSDVRSVKLSRDRIVVV 149 (415)
Q Consensus 118 vwd~~~~~~-----~-~~~~~----~~~i~~l~~~~~~~~~~ 149 (415)
.++...++. + ..+.. ......|+|.|||.+.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv 150 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYV 150 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEE
Confidence 777664421 1 11211 12346899999997766
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.13 Score=46.61 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=104.7
Q ss_pred EEEEeeeCCeEEEEecCCC-CC------CCCCeEEEEECCCC-CEEEEEEc--------cCceeEEEEcC--Ce--EEEE
Q 014977 90 IVEMLFRCNILALVGAGDN-SQ------YPPTKVIIWDDHQS-RCIGEFAF--------RSDVRSVKLSR--DR--IVVV 149 (415)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d-~~------~~~~~i~vwd~~~~-~~~~~~~~--------~~~i~~l~~~~--~~--~~~~ 149 (415)
.-++...+++.++++++.. |. -.+|.|.++|+.+. .....+.. ......|.+.+ ++ .+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3344556778777776310 00 02499999998742 12233332 13667777755 33 2333
Q ss_pred -----eCCeEEEEEcCCc-e---eeeEEeccCCCcceEEEecCCCceEEEEeCC----------------ccCeEEEEEc
Q 014977 150 -----LEHKIYVYSFVDL-K---LLHQIETLANLRGLCCLSHHSSTSVLACPGL----------------QRGQVRIEHF 204 (415)
Q Consensus 150 -----~d~~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----------------~dg~v~i~~~ 204 (415)
.+..|.+|++... + .+..+.. ........+..++++.+.+.... ..|.|.-++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 2567888877442 2 2223332 22234556666677776554210 1233333333
Q ss_pred CCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCC-CCCEEEEE
Q 014977 205 GLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSP-NVQWLAVA 279 (415)
Q Consensus 205 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~sp-dg~~l~s~ 279 (415)
..+..+...-...+.++|+||++.|+.+.. .+. |..|++.. ++. ...+. ..+..-.+++.+ +|++.+++
T Consensus 211 --~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 211 --NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp --TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEE
T ss_pred --CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEe
Confidence 234444434456789999999998777665 455 99999863 432 22342 345678889998 58877766
Q ss_pred eCCC
Q 014977 280 SDKG 283 (415)
Q Consensus 280 s~dg 283 (415)
..++
T Consensus 285 ~~~g 288 (355)
T 3sre_A 285 HPNG 288 (355)
T ss_dssp ESCH
T ss_pred cCCc
Confidence 5443
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.12 E-value=0.026 Score=50.26 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=100.5
Q ss_pred CceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeE-Eec----cCCCcceEEEec---CCCceEEEEeC--------
Q 014977 134 SDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQ-IET----LANLRGLCCLSH---HSSTSVLACPG-------- 193 (415)
Q Consensus 134 ~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~-~~~----~~~~~~~~~~~~---~~~~~~l~~~g-------- 193 (415)
....+++|++ ++.+.+ ..++|..||...+..... +.. .........+.+ +++++++++.-
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3445678876 455555 589999999875543332 221 111224467777 67777776522
Q ss_pred ----CccCeEEEEEcC----CcceEEEe--cC-----------ccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcE
Q 014977 194 ----LQRGQVRIEHFG----LNMIKLIN--AH-----------DSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTR 251 (415)
Q Consensus 194 ----~~dg~v~i~~~~----~~~~~~~~--~~-----------~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~ 251 (415)
+.+..|..++.. ++.+.... .. ......++..++|+..++++.. +. |..++. .|+.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~p-dG~~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSA-DGKT 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECT-TSCC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeC-CCCE
Confidence 014556666766 55554443 11 1247899999999999988888 88 877775 4443
Q ss_pred EEEEec----CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977 252 LQEVRR----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (415)
Q Consensus 252 ~~~~~~----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~ 292 (415)
+..+.. .......+.|+++|+|..|++....|.|..+|+.+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 333321 11122367999999999998887799999999884
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.033 Score=52.83 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=88.7
Q ss_pred ceeEEEEcCC--eEEEE-e--CCeEEEEEcCCceeeeEEeccC-CCcceEEEec-------CCCceEEEEeCCccC----
Q 014977 135 DVRSVKLSRD--RIVVV-L--EHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSH-------HSSTSVLACPGLQRG---- 197 (415)
Q Consensus 135 ~i~~l~~~~~--~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~g~~dg---- 197 (415)
....|+|+|. +.+++ . .+.|++.|+.++.....+.... .......+++ ++++..|+++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568899983 44444 2 3578889988766655443322 1123566666 777765555443331
Q ss_pred e--EEEEEcCC--cce-----EEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECC-------CCcE---------
Q 014977 198 Q--VRIEHFGL--NMI-----KLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTV-------DGTR--------- 251 (415)
Q Consensus 198 ~--v~i~~~~~--~~~-----~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~-------~~~~--------- 251 (415)
. |.+.+... ... ..+... .....++++|+ +.++++-..++. |..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccc
Confidence 2 33433222 211 223222 23457888994 555556667777 9999987 5543
Q ss_pred --EEE-EecCCCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEcee
Q 014977 252 --LQE-VRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLRV 292 (415)
Q Consensus 252 --~~~-~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~ 292 (415)
... +... .......|+|+|+|++|+.+ +....|+.++...
T Consensus 298 g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 298 NTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 222 2221 23456899999999965544 4566788866543
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.01 E-value=0.31 Score=47.96 Aligned_cols=223 Identities=8% Similarity=-0.031 Sum_probs=123.8
Q ss_pred EEEEEeCCcEEEEEccCCcee-EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccC
Q 014977 58 CFAAGTSCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS 134 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~ 134 (415)
+|+.+..+.|+..++++.... ....+ ..-....++.|++ ++.++.+.... +.|..+++........+. .-.
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCCC
Confidence 566666667777777654321 22122 2234467888887 45555554444 889999976544333333 235
Q ss_pred ceeEEEEcC-CeEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977 135 DVRSVKLSR-DRIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI 209 (415)
Q Consensus 135 ~i~~l~~~~-~~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~ 209 (415)
....+++.. .+.+ ++ ..+.|.+.++.... ...+.. ........++.+|....|..+. +....|.....++...
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~ 470 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR 470 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence 677888875 3333 33 45789999876443 333321 1122455666666433343432 2235666666666554
Q ss_pred EEEe-cCccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eCCCeEE
Q 014977 210 KLIN-AHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVH 286 (415)
Q Consensus 210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~ 286 (415)
..+. ..-...+.|++++++..|+.+... +. |..+++........+.. .-....+|+...+ +|+.. ...+.|.
T Consensus 471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~--~l~~P~glav~~~--~ly~tD~~~~~I~ 545 (619)
T 3s94_A 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTGRRVLVED--KIPHIFGFTLLGD--YVYWTDWQRRSIE 545 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEEEC--CCCSSCCEEEETT--EEEEECTTSSCEE
T ss_pred EEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCceEEEecc--CCCCcEEEEEECC--EEEEeecCCCeEE
Confidence 4443 334567899999877777766654 55 99999854333222222 1112345555433 44444 3455677
Q ss_pred EEEceec
Q 014977 287 IFSLRVR 293 (415)
Q Consensus 287 vwd~~~~ 293 (415)
..+..++
T Consensus 546 ~~~k~~g 552 (619)
T 3s94_A 546 RVHKRSA 552 (619)
T ss_dssp EEESSSC
T ss_pred EEEcCCC
Confidence 7776666
No 307
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.00 E-value=0.36 Score=48.71 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=129.6
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~ 123 (415)
...|.+|.-..+|.+ -.|+...+..||-..... +...-......+.++....++.+.++.. .-+..||..+
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~GL~ryDG~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKGLFSYDGYSTQQ-HFTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSCEEEECSSCEEE-CSCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETTT
T ss_pred cceEEEEEECCCCCE-EEEECCCccccCCCceEE-EEccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCCC
Confidence 566999988888754 455645566676432111 1000011234577777777776666543 4578999777
Q ss_pred CCEEEEEE-ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEec---cCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977 124 SRCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (415)
Q Consensus 124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~dg~v 199 (415)
.+...... ....|.++....+..+++..+.+..||..+++.. .+.. ......+.++..+.++.+.+.+ .+| +
T Consensus 92 ~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~G-l 167 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGT--YNG-L 167 (758)
T ss_dssp TEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEE--TTE-E
T ss_pred CEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEe--CCC-H
Confidence 64322101 2335677665444444446668999998765433 2311 1112246677777677666543 344 4
Q ss_pred EEEEcCCcceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977 200 RIEHFGLNMIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (415)
Q Consensus 200 ~i~~~~~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (415)
..++........+... ...|.++...+++..|..|+. +. +..+|..+++.. .+... ....|.++....+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~-~~~~l-~~~~i~~i~~d~~g 243 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIK-QTEAF-HNNSIKSLALDGNG 243 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEE-EEEEE-EEEEEEEEEECTTC
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEE-eccCC-CCCeEEEEEEcCCC
Confidence 4444444333333211 224788888777765555654 46 889998776543 22211 23468888888888
Q ss_pred CEEEEEeCCCeEEEEEceec
Q 014977 274 QWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 274 ~~l~s~s~dg~i~vwd~~~~ 293 (415)
.+.+ |+.+| +.+++..++
T Consensus 244 ~lWi-gT~~G-l~~~~~~~~ 261 (758)
T 3ott_A 244 DLLA-GTDNG-LYVYHNDTT 261 (758)
T ss_dssp CEEE-EETTE-EEEECCTTS
T ss_pred CEEE-EeCCc-eeEEecCCC
Confidence 7554 45555 778876554
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.98 E-value=0.19 Score=45.16 Aligned_cols=186 Identities=13% Similarity=0.171 Sum_probs=101.5
Q ss_pred CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe--------EEEEecCC--CCCCCCCeEEEEEC--
Q 014977 55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--------LALVGAGD--NSQYPPTKVIIWDD-- 121 (415)
Q Consensus 55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~s~~~--d~~~~~~~i~vwd~-- 121 (415)
...+++... .+.+.+||++ ++.+.. +..+.. ..+...++. ..+++... + +.|.+|++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~--~~~g~~--nnVD~r~~~~l~g~~~dla~as~R~~~~-----n~l~vf~iDp 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKMLHS--YNTGKL--NNVDIRYDFPLNGKKVDIAAASNRSEGK-----NTIEIYAIDG 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCEEEE--ECCSCE--EEEEEEEEEEETTEEEEEEEEEECSTTC-----CEEEEEEECT
T ss_pred CccEEEEEcCCCCEEEEcCC-CcEEEE--ccCCCc--ccEEEecccccCCceEeEEEEeCCCCCC-----CeEEEEEECC
Confidence 334544434 8899999994 344433 222322 222222222 34555544 4 89999976
Q ss_pred CCCCEEEEEE-------cc-CceeEEEE--cCC-eE-EEE---eCCeEEEEEcC-------CceeeeEEeccCCCcceEE
Q 014977 122 HQSRCIGEFA-------FR-SDVRSVKL--SRD-RI-VVV---LEHKIYVYSFV-------DLKLLHQIETLANLRGLCC 179 (415)
Q Consensus 122 ~~~~~~~~~~-------~~-~~i~~l~~--~~~-~~-~~~---~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~ 179 (415)
.+++ +..+. .. ..+..+++ ++. +. +++ .++.+..|++. +.+.++++..... .-.
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq---~Eg 184 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ---TEG 184 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC---EEE
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC---cce
Confidence 3443 44442 11 56677887 663 43 233 57899999882 3456677765442 334
Q ss_pred EecCCCceEEEEeCCccCeEEEEEcCC------cceEEEe-cC-ccceEEEEe--CCCCC-EEEEEe-CCCcEEEEEECC
Q 014977 180 LSHHSSTSVLACPGLQRGQVRIEHFGL------NMIKLIN-AH-DSHIACFTL--TLDGL-LLATAS-TRGTLIRIFNTV 247 (415)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~------~~~~~~~-~~-~~~i~~l~~--sp~g~-~l~s~s-~dg~~I~vwd~~ 247 (415)
+..++....|.+ +.++.-|..++... +.+..+. ++ ...+..|++ .++|+ +|++++ .+.. ..+||..
T Consensus 185 cvvDd~~g~Lyv-~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~ 262 (355)
T 3amr_A 185 MAADDEYGRLYI-AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQ 262 (355)
T ss_dssp EEEETTTTEEEE-EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESS
T ss_pred EEEcCCCCeEEE-ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECC
Confidence 444444444544 44553333333221 1222221 12 236777777 56666 666555 5567 9999996
Q ss_pred -CCcEEEEEe
Q 014977 248 -DGTRLQEVR 256 (415)
Q Consensus 248 -~~~~~~~~~ 256 (415)
+.+.+..|.
T Consensus 263 ~~~~~vg~f~ 272 (355)
T 3amr_A 263 GKNKYVADFR 272 (355)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEEEEEE
Confidence 677777775
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.96 E-value=0.072 Score=49.01 Aligned_cols=137 Identities=13% Similarity=0.150 Sum_probs=87.7
Q ss_pred EEeCCeEEEEEcCCceeeeEEeccC--CCcceEEEecCCCceEEEEeCCccCeEEEEEcC-C---c---------ceEEE
Q 014977 148 VVLEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L---N---------MIKLI 212 (415)
Q Consensus 148 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~---~---------~~~~~ 212 (415)
++.++.||.-++......+.+.... ....+..+..+|+|.+||..| +..|.|-... . . ..+.+
T Consensus 37 ~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 37 FIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp EEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred EEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEE
Confidence 3378889988887544455554432 111345577778888999876 4466662222 1 0 11233
Q ss_pred ec------CccceEEEEeCCC---CCEEEEEeCCCcEEEEEECCCC--cEEEEEec-------CCCcccEEEEEeCCCCC
Q 014977 213 NA------HDSHIACFTLTLD---GLLLATASTRGTLIRIFNTVDG--TRLQEVRR-------GVDRAEIYSIALSPNVQ 274 (415)
Q Consensus 213 ~~------~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~-------~~~~~~v~~l~~spdg~ 274 (415)
.- ...+|..+.|+|- +..|++-..|+. |++||+... ++. .+.. ......|.+++|..++-
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence 32 2567999999995 458999999999 999999753 222 3321 11225788999999888
Q ss_pred EEEEEe--CCCeEEEE
Q 014977 275 WLAVAS--DKGTVHIF 288 (415)
Q Consensus 275 ~l~s~s--~dg~i~vw 288 (415)
.|...+ ..|.|+-.
T Consensus 193 TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCCCEEEE
Confidence 777755 77866543
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.78 E-value=0.29 Score=44.27 Aligned_cols=202 Identities=8% Similarity=0.052 Sum_probs=107.8
Q ss_pred ceEEEEEeCCCCEEEEE-------------eCCcEEEEEccCC-ceeEEEeccC-----CCeeEEEEeeeC--Ce--EEE
Q 014977 46 ELISVSWNQDYGCFAAG-------------TSCGFRIYNCEPF-KETFRRDLKS-----GGFRIVEMLFRC--NI--LAL 102 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g-------------~d~~v~iw~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~--~~--~~l 102 (415)
..-.+...|+|..++++ .+|.|.++|.++. .......+.+ .......+.+.. ++ .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34456678888777765 3788999998732 1222222212 223444455433 22 333
Q ss_pred EecCCCCCCCCCeEEEEECCCC-CEEE---EEEc--cCceeEEEEcCCeEEEE-eC-------------------CeEEE
Q 014977 103 VGAGDNSQYPPTKVIIWDDHQS-RCIG---EFAF--RSDVRSVKLSRDRIVVV-LE-------------------HKIYV 156 (415)
Q Consensus 103 ~s~~~d~~~~~~~i~vwd~~~~-~~~~---~~~~--~~~i~~l~~~~~~~~~~-~d-------------------~~i~i 156 (415)
+..... ....|.+|++..+ .... .+.+ -...+++.+.++|.+.+ .+ +.|+.
T Consensus 131 Vvnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 332221 1278888876553 2222 2222 34678999999988766 11 34555
Q ss_pred EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--c--ceEEEecCccceEEEEeCC-CCCEE
Q 014977 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--N--MIKLINAHDSHIACFTLTL-DGLLL 231 (415)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~i~~l~~sp-~g~~l 231 (415)
+|. ++. ..+..... ....++++|+++.+.++.+..+.|..++... . ..+.+ ........+++.+ +|++.
T Consensus 208 ~d~--~~~-~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp ECT--TCC-EEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred EEC--CeE-EEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence 553 332 22221111 3445566667766666566678888866542 1 12233 2345677899999 59987
Q ss_pred EEEeCCCcEEEEEECC--CCcEEEEEe
Q 014977 232 ATASTRGTLIRIFNTV--DGTRLQEVR 256 (415)
Q Consensus 232 ~s~s~dg~~I~vwd~~--~~~~~~~~~ 256 (415)
+++..++..|..|+.. .+..+..+.
T Consensus 282 va~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEecCCceEEEEECCCCCCCCEEEEEE
Confidence 7666554214445543 244555554
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.69 E-value=0.21 Score=46.04 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=68.3
Q ss_pred ccCeEEEEEcC-CcceEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc------------EEEEEec
Q 014977 195 QRGQVRIEHFG-LNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------------RLQEVRR 257 (415)
Q Consensus 195 ~dg~v~i~~~~-~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------------~~~~~~~ 257 (415)
.++.||.-... ....+.+... -..|..+..+|+|++||..+.. . |.|-.+..+. ..+.+.-
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCccccCcccccccccceeEEEc
Confidence 35678874433 4445555543 2367889999999999998765 5 8888887331 1223332
Q ss_pred CC----CcccEEEEEeCCC---CCEEEEEeCCCeEEEEEceecc
Q 014977 258 GV----DRAEIYSIALSPN---VQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 258 ~~----~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd~~~~~ 294 (415)
+. ...+|..+.|+|- +..|++-..|+.|++||+....
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 11 2457999999994 5689999999999999999843
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.68 E-value=0.34 Score=43.65 Aligned_cols=225 Identities=6% Similarity=-0.031 Sum_probs=117.9
Q ss_pred CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeCC----eEEEEe--cCCCCCC
Q 014977 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCN----ILALVG--AGDNSQY 111 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~l~s--~~~d~~~ 111 (415)
.-..-+.++|.|||++|++-. .|.|++++.+.........+ .........++++|+ +.++++ ...+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~--- 106 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD--- 106 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS---
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC---
Confidence 344578999999999888887 88888887654332222111 234566788999884 444443 1222
Q ss_pred CCCeEEEEECCCC----------CEEE-EEE--ccCceeEEEEcCCeEEEEe----------------CCeEEEEEcCCc
Q 014977 112 PPTKVIIWDDHQS----------RCIG-EFA--FRSDVRSVKLSRDRIVVVL----------------EHKIYVYSFVDL 162 (415)
Q Consensus 112 ~~~~i~vwd~~~~----------~~~~-~~~--~~~~i~~l~~~~~~~~~~~----------------d~~i~iwd~~~~ 162 (415)
+.|.-|.+..+ +.+. .+. ....-..|.|.|||.+.+. .+.|.-++.. +
T Consensus 107 --~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G 183 (347)
T 3das_A 107 --NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-G 183 (347)
T ss_dssp --EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-S
T ss_pred --CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-C
Confidence 56666665441 1111 121 1234567999999877662 1445444432 2
Q ss_pred ee--------eeEE-eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CC------------------cceEEEec
Q 014977 163 KL--------LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GL------------------NMIKLINA 214 (415)
Q Consensus 163 ~~--------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~------------------~~~~~~~~ 214 (415)
+. ...+ .++. ....+++++++.+.++--..++.-.|... .+ .++..+..
T Consensus 184 ~ip~~nPf~~~~i~a~G~R---Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~ 260 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHR---NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST 260 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCS---BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred CccCCCCCCCCeEEeeCCC---CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence 20 1112 2232 23445566666665543333332333211 11 11222222
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977 215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR----LQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (415)
+......++|. +|.++...-..+. |....+..... ...+.+ ....+.+++..|||.++++..
T Consensus 261 ~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 261 DEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence 22344566665 4555555545555 65556644322 112222 235789999999997666543
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.66 E-value=0.36 Score=43.74 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=116.7
Q ss_pred CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC----eEEEEecCC--CCCCCCCe
Q 014977 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGD--NSQYPPTK 115 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~--d~~~~~~~ 115 (415)
.....++|.|+|+++++-.++.|++++.+ ....+ ..+ .........++++|+ +.++++... ...-..+.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GKKLV-ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CEEEE-EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEe-eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45789999999986666558888888633 22111 111 123456788899986 555554321 00000035
Q ss_pred EEEEECCCC--CE-----E-EEEE--ccCceeEEEEcCCeEEEEeC----------------CeEEEEEcCCcee-----
Q 014977 116 VIIWDDHQS--RC-----I-GEFA--FRSDVRSVKLSRDRIVVVLE----------------HKIYVYSFVDLKL----- 164 (415)
Q Consensus 116 i~vwd~~~~--~~-----~-~~~~--~~~~i~~l~~~~~~~~~~~d----------------~~i~iwd~~~~~~----- 164 (415)
|..|+...+ .. + ..+. .......|.|.|||.+.+.. +.|..++.. ++.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 666765543 11 1 1122 11235679999999877621 355555543 221
Q ss_pred ---eeEE-eccCCCcceEEEecCC-CceEEEEeCCccC--eEEEEEcCC-----------------cceEEEecCccceE
Q 014977 165 ---LHQI-ETLANLRGLCCLSHHS-STSVLACPGLQRG--QVRIEHFGL-----------------NMIKLINAHDSHIA 220 (415)
Q Consensus 165 ---~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg--~v~i~~~~~-----------------~~~~~~~~~~~~i~ 220 (415)
...+ .++.+ ...+++++ .+.++++-...+. .|.+-.... .++..+........
T Consensus 186 f~~~~i~a~G~rn---p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWSYGHRN---PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp STTCCEEEECCSC---CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCcEEEEccCC---cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1111 22222 33455555 4444443222222 122211100 11122211223466
Q ss_pred EEEeC-------CCCCEEEEEeCCCcEEEEEECCCC-cEE--EEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977 221 CFTLT-------LDGLLLATASTRGTLIRIFNTVDG-TRL--QEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (415)
Q Consensus 221 ~l~~s-------p~g~~l~s~s~dg~~I~vwd~~~~-~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (415)
.++|. .+|.++++.-..+. |...++... +.. ..+... ....+..+++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 78883 46766666555566 888888653 332 233221 234789999999997666654
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.45 E-value=0.11 Score=55.21 Aligned_cols=231 Identities=15% Similarity=0.157 Sum_probs=134.1
Q ss_pred EEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC-CCEE
Q 014977 50 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ-SRCI 127 (415)
Q Consensus 50 l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~ 127 (415)
.-.+|..+.+|.=....+.|||+++..+.....+ ...|+-+.|-. +...+++. ..|.-|++.. ..++
T Consensus 71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQPV 139 (1630)
T ss_pred hccCCCcceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCccH
Confidence 3456777777766688899999998665544433 33566777754 56666763 7899999864 2444
Q ss_pred EEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEEE
Q 014977 128 GEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLAC 191 (415)
Q Consensus 128 ~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 191 (415)
+.+. | ...|..-..+++.++++ ..|.+.+|..+. +..+.+.+|........+.-++... ++++
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 4443 2 45677777888888776 257888998754 3344455554422222222111111 2221
Q ss_pred e--CCccCeEEEEEcCCc----ce------EEEe---cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 192 P--GLQRGQVRIEHFGLN----MI------KLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 192 ~--g~~dg~v~i~~~~~~----~~------~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
+ ....+.++|-..... .. ..+. ....-..++..++.-..+..-+.-|. |.+||+.+|.++..-+
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence 1 111256666333211 11 0111 11233446777777777888888999 9999999999876544
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (415)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~ 295 (415)
- ...+|.-.+-+....=++.....|.|.--.++...-
T Consensus 298 i--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 298 I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred c--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 3 344555544444333344555777666666655543
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.044 Score=49.28 Aligned_cols=108 Identities=9% Similarity=0.093 Sum_probs=65.5
Q ss_pred EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEe---eeCCeEEEEec-CCCCCCCCCeEEEEECCCCCEEEEEEc
Q 014977 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML---FRCNILALVGA-GDNSQYPPTKVIIWDDHQSRCIGEFAF 132 (415)
Q Consensus 58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~-~~d~~~~~~~i~vwd~~~~~~~~~~~~ 132 (415)
++++++ ||.|.-+|.++++........ ......... ...++..++.. ..| |.|..++..+|.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEEH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeecc
Confidence 566666 999888888887777765542 111111111 01133444433 444 9999999988866655552
Q ss_pred cC-----ceeE---EEE------cCCeEEEE--eCCeEEEEEcCCceeeeEEecc
Q 014977 133 RS-----DVRS---VKL------SRDRIVVV--LEHKIYVYSFVDLKLLHQIETL 171 (415)
Q Consensus 133 ~~-----~i~~---l~~------~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~ 171 (415)
.. ++.. ..+ +.++.+++ .++.++..|+.+|+.+..+...
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 21 2221 001 24666666 7999999999999999888643
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.25 E-value=0.54 Score=41.20 Aligned_cols=228 Identities=15% Similarity=0.105 Sum_probs=104.8
Q ss_pred CCEEEEEe-C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977 56 YGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF 130 (415)
Q Consensus 56 g~~la~g~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~ 130 (415)
+.+++.|+ + ..+.+||..+..-.....+....... .+.... +.+++.|+.+.......+.+||..+.+....-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYMA-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET-TEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEEC-CEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 34555655 2 45778887765432222221111111 122223 44444444332222357899998877644332
Q ss_pred E--ccCceeEEEEcCCeEEEE--eC-----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-----
Q 014977 131 A--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR----- 196 (415)
Q Consensus 131 ~--~~~~i~~l~~~~~~~~~~--~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d----- 196 (415)
. ....-.+++...+..+++ .+ ..+.+||+.+.+-...-..........+... ++.++++ |+.+
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAV-GGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEETTTTE
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEE-eCCCCCCCc
Confidence 2 111122333334444444 22 3688899877654322111111111112222 3445555 4332
Q ss_pred --CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecCC-CcccEE
Q 014977 197 --GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRGV-DRAEIY 265 (415)
Q Consensus 197 --g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~~-~~~~v~ 265 (415)
..+.+++.....-..+.. .......+.+ ++++++.|+.+ .. +.+||+.+.+-.. +.... ......
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~~~~r~~~~ 246 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQ-VADMNMCRRNAG 246 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEE-ECCCSSCCBSCE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEee-CCCCCCccccCe
Confidence 235555555433222221 1111122222 56777777754 35 8899998765432 22110 111112
Q ss_pred EEEeCCCCCEEEEEeCCC-----eEEEEEceecc
Q 014977 266 SIALSPNVQWLAVASDKG-----TVHIFSLRVRV 294 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~dg-----~i~vwd~~~~~ 294 (415)
.+.+ ++++++.|+.++ .+.+||+++++
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2222 667777777553 48899987664
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.21 E-value=1.6 Score=46.22 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=120.8
Q ss_pred CCceEEEEEeCC------CCEEEEEe--CCcEEEEEccCCceeEEEeccCC-CeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977 44 EIELISVSWNQD------YGCFAAGT--SCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPT 114 (415)
Q Consensus 44 ~~~V~~l~~sp~------g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~~~ 114 (415)
...|.|+++.|. ++++|+|. |++++|+++.+.+......+... ....+.+.......++..+-.| |
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d-----G 627 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD-----G 627 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT-----S
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC-----C
Confidence 457999999863 36899988 89999999998776666555221 1111222222344555555554 8
Q ss_pred eEEEEE--CCCCCEEEEEE---ccCceeEEEEcCCe--EEEE-eCCeEEEEEcCCceeeeEEeccCCCc-ceEEEecC--
Q 014977 115 KVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV-LEHKIYVYSFVDLKLLHQIETLANLR-GLCCLSHH-- 183 (415)
Q Consensus 115 ~i~vwd--~~~~~~~~~~~---~~~~i~~l~~~~~~--~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~-- 183 (415)
.+.-+. ..+|+....-. ...++.=..+...+ ..++ .+.-..+|.-+ ++.... ......+ ....|+..
T Consensus 628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGY 705 (1158)
T ss_dssp EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSS
T ss_pred eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccC
Confidence 765544 44565543321 23344333333322 2222 45555555432 222211 1111111 23334332
Q ss_pred CCceEEEEeCCccCeEEEEEcC---CcceEEEecCccceEEEEeCCCCCEEEEEeC------------------------
Q 014977 184 SSTSVLACPGLQRGQVRIEHFG---LNMIKLINAHDSHIACFTLTLDGLLLATAST------------------------ 236 (415)
Q Consensus 184 ~~~~~l~~~g~~dg~v~i~~~~---~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~------------------------ 236 (415)
+++ ++++ .++.++|-... .-.++.+. -...+..++++|+.+.++.+..
T Consensus 706 ~~g-~v~~---~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1158)
T 3ei3_A 706 PDS-LALA---NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS 780 (1158)
T ss_dssp TTE-EEEE---CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred CCc-EEEE---cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence 333 3333 24457773332 11222222 2345667777776664433221
Q ss_pred -------------------------CCcEEEEEECCCCcEEEEEecCCCcccEEEE---EeCCC-CCEEEEEe-------
Q 014977 237 -------------------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI---ALSPN-VQWLAVAS------- 280 (415)
Q Consensus 237 -------------------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l---~~spd-g~~l~s~s------- 280 (415)
-+. |++.|-.+.+.+..+.-..+ ..+.++ .|..+ ..+|++|+
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 123 78888888887766654322 234444 45433 46888887
Q ss_pred ---CCCeEEEEEce
Q 014977 281 ---DKGTVHIFSLR 291 (415)
Q Consensus 281 ---~dg~i~vwd~~ 291 (415)
..|.|++|++.
T Consensus 859 ~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYS 872 (1158)
T ss_dssp SSCCCEEEEEEEEE
T ss_pred CCCCceEEEEEEEE
Confidence 34789999987
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.12 E-value=0.63 Score=40.73 Aligned_cols=230 Identities=10% Similarity=0.028 Sum_probs=106.8
Q ss_pred CCCEEEEEe--C-----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--
Q 014977 55 DYGCFAAGT--S-----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-- 125 (415)
Q Consensus 55 ~g~~la~g~--d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-- 125 (415)
++.+++.|+ + ..+.+||..+..-.....+...... ..+....+..+++ |+.+.......+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~l~v~-GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVSLHDRIYVI-GGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEE-CCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEEECCEEEEE-cCCCCCccCceEEEEECCCCCCC
Confidence 345566555 2 3577888776443222122111111 1222233444444 443211223579999988876
Q ss_pred -EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 126 -CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 126 -~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
....-. ....-.++....+..+++ . ...+.+||+.+.+-...-..........+... ++.++++ |+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL-GGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE-CCC
Confidence 433322 111122233333333343 1 24689999877654332222211112222222 3455555 443
Q ss_pred c-----CeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecCCCcc
Q 014977 196 R-----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRGVDRA 262 (415)
Q Consensus 196 d-----g~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~~~~~ 262 (415)
+ ..+.+++.....-..+... ......+.+ ++++++.|+.+ .. +.+||+.+.+-...-.......
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCccc
Confidence 3 2355566554433333211 111122222 56777777764 45 8999998775432211110111
Q ss_pred cEEEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977 263 EIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV 294 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~ 294 (415)
....+.+ ++++++.|+.+ ..|.+||+++++
T Consensus 246 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 246 YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1222233 66777777655 357888887654
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.01 E-value=0.84 Score=41.25 Aligned_cols=238 Identities=8% Similarity=0.009 Sum_probs=119.8
Q ss_pred ceEEEEEeCCCC-EEEEEeCCcEEEEEccCCcee-EE---EeccCCCeeEEEEeeeCC----eEEEEecCCCCCC--CCC
Q 014977 46 ELISVSWNQDYG-CFAAGTSCGFRIYNCEPFKET-FR---RDLKSGGFRIVEMLFRCN----ILALVGAGDNSQY--PPT 114 (415)
Q Consensus 46 ~V~~l~~sp~g~-~la~g~d~~v~iw~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~----~~~l~s~~~d~~~--~~~ 114 (415)
....++|.|+|+ ++++-..+.|++++.+..... +. ..+.........++++|+ +.++++......- ...
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 468999999999 665555888888875421110 00 001123345678889884 5555543210000 013
Q ss_pred eEEEEECCCC--CE--EEE-EE-cc------CceeEEEEcCCeEEEEe--C--------------CeEEEEEcCCce---
Q 014977 115 KVIIWDDHQS--RC--IGE-FA-FR------SDVRSVKLSRDRIVVVL--E--------------HKIYVYSFVDLK--- 163 (415)
Q Consensus 115 ~i~vwd~~~~--~~--~~~-~~-~~------~~i~~l~~~~~~~~~~~--d--------------~~i~iwd~~~~~--- 163 (415)
.|..+++..+ +. ... +. .. .....|.|.|||.+.+. + +.|.-++.. ++
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCC
Confidence 5666665433 11 111 11 11 22457999999977762 2 466666653 22
Q ss_pred ----------eeeEEe-ccCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcC-C------------------------
Q 014977 164 ----------LLHQIE-TLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG-L------------------------ 206 (415)
Q Consensus 164 ----------~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~-~------------------------ 206 (415)
....+. ++. ....+++++ .+.+.++--..++.=.|.... +
T Consensus 178 ~npf~~~~~~~~~i~a~G~r---np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR---NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS---EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEEEcCc---CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 111121 222 345566666 455544322222111221110 0
Q ss_pred -------cceEEEecCccceEEEEeCC-------CCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-CCcccEEEEEeCC
Q 014977 207 -------NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSP 271 (415)
Q Consensus 207 -------~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~sp 271 (415)
.++..+. +......++|.. +|.++++.-..+. |...++..++......-- .....+..+++.|
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 0111122 223456677753 4666666555666 888887765443322110 0224789999999
Q ss_pred CCCEEEEEe-CCCeEEEEEce
Q 014977 272 NVQWLAVAS-DKGTVHIFSLR 291 (415)
Q Consensus 272 dg~~l~s~s-~dg~i~vwd~~ 291 (415)
||.++++.. .+| +||.+.
T Consensus 333 dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 333 DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TSCEEEEECSTTE--EEEEEE
T ss_pred CCcEEEEEeCCCC--EEEEEe
Confidence 998665433 344 566654
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.95 E-value=1.6 Score=43.94 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc--eeEEEecc-----CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i 116 (415)
...|.++.-..+|.+.+. +.+.+..++..+.. ........ -....+.++....++.+.++. . +-|
T Consensus 323 ~~~v~~i~~D~~g~lWiG-t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~------~GL 394 (758)
T 3ott_A 323 GNQFYSLFRDSKGFYWFG-GANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D------GSI 394 (758)
T ss_dssp CCBEEEEEECTTCCEEEE-ETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T------TEE
T ss_pred CceEEEEEEcCCCCEEEe-eCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C------CcH
Confidence 346888887777775554 44456666654321 11111100 112357777777777655554 2 678
Q ss_pred EEEECCCCCEEEEEE-------ccCceeEEEEcCCeEEEE-e-CCeEEEEEcCCc-----eee---eEEecc--CCCcce
Q 014977 117 IIWDDHQSRCIGEFA-------FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDL-----KLL---HQIETL--ANLRGL 177 (415)
Q Consensus 117 ~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~~~~~~-~-d~~i~iwd~~~~-----~~~---~~~~~~--~~~~~~ 177 (415)
..+|..+++...... ....|.++...+++.+.+ . .+.+.++|..+. +.. ..+... .....+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 474 (758)
T 3ott_A 395 NRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFI 474 (758)
T ss_dssp EEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCE
T ss_pred hhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccccee
Confidence 899987775543221 124578888888877666 4 567889986421 111 111111 111246
Q ss_pred EEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (415)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (415)
.++..+.++.+.+..|...|..+ ++.....+..+... ...+.++....+|.+.+ |+. +. +..||..+++..
T Consensus 475 ~~i~~d~~g~lWi~~~t~~Gl~~-~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~-~G-l~~~~~~~~~~~- 549 (758)
T 3ott_A 475 NQIIPDNEGNVWVLLYNNKGIDK-INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFH-GG-VMRINPKDESQQ- 549 (758)
T ss_dssp EEEEECTTSCEEEEETTCSSEEE-EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EET-TE-EEEECC--CCCC-
T ss_pred eeEEEcCCCCEEEEccCCCCcEE-EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Eec-Cc-eEEEecCCCceE-
Confidence 77778888876653354566444 44444444444321 24577888888888655 444 45 888987665432
Q ss_pred EEe-cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977 254 EVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 254 ~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
.+. .+.....|.++... +| .|..++..| |..||.++.+
T Consensus 550 ~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 550 SISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMD 588 (758)
T ss_dssp BCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCC
T ss_pred EecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCce
Confidence 111 11122357777763 55 456666777 7788876554
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.79 E-value=2.5 Score=44.82 Aligned_cols=169 Identities=9% Similarity=0.045 Sum_probs=99.5
Q ss_pred CCCeEEEEECCCCCEEEE--EEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCce
Q 014977 112 PPTKVIIWDDHQSRCIGE--FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS 187 (415)
Q Consensus 112 ~~~~i~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (415)
..|.|.++++..++.... ...++.+++++--.+ ++++ ...+|++|++...+.+. ... ....+....+.... .
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~--~ 937 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG--D 937 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET--T
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccC--C
Confidence 458999999875543322 236889999886654 5555 89999999997655443 211 11112233443322 3
Q ss_pred EEEEeCCccCeEEE--EEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-------cEE---E
Q 014977 188 VLACPGLQRGQVRI--EHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------TRL---Q 253 (415)
Q Consensus 188 ~l~~~g~~dg~v~i--~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~~~---~ 253 (415)
++++ |..-..|.+ |......+..+-. +...++++.+-.++ .++.+..+|. |.+...... +.+ .
T Consensus 938 ~I~v-gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~~~~~~~~~~~L~~~~ 1014 (1158)
T 3ei3_A 938 FILV-GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDSAATTDEERQHLQEVG 1014 (1158)
T ss_dssp EEEE-EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECTTCCSTTGGGBEEEEE
T ss_pred EEEE-EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCCCCCCccccceeeeEE
Confidence 4554 444445555 6655544444433 45567788876554 6777889998 988876431 222 2
Q ss_pred EEecCCCcccEEEEE---eCCCC---------CEEEEEeCCCeEEEEEc
Q 014977 254 EVRRGVDRAEIYSIA---LSPNV---------QWLAVASDKGTVHIFSL 290 (415)
Q Consensus 254 ~~~~~~~~~~v~~l~---~spdg---------~~l~s~s~dg~i~vwd~ 290 (415)
.|.- ...|+++. +.+.+ ..++.++.+|.|.+.-.
T Consensus 1015 ~fhl---G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1015 LFHL---GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEC---SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred EEeC---CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 2332 23566665 33332 34778889998887753
No 322
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.42 E-value=1.4 Score=39.65 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=43.3
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE--EEEE----ccCceeEEEEcCC----eEEEE--e-C----
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI--GEFA----FRSDVRSVKLSRD----RIVVV--L-E---- 151 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~--~~~~----~~~~i~~l~~~~~----~~~~~--~-d---- 151 (415)
....+.|.+++.++++... +.|.+++ +++.. ..+. .......|+++|+ +.+.+ . .
T Consensus 32 ~P~~ia~~pdG~l~V~e~~------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERP------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECTTSCEEEEETT------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEEcCCCeEEEEeCC------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 4568889999987777543 8999998 44321 1111 1356889999998 44433 2 2
Q ss_pred -CeEEEEEcCCc
Q 014977 152 -HKIYVYSFVDL 162 (415)
Q Consensus 152 -~~i~iwd~~~~ 162 (415)
+.|..|+....
T Consensus 104 ~~~v~r~~~~~~ 115 (352)
T 2ism_A 104 RNQVVRLRHLGE 115 (352)
T ss_dssp EEEEEEEEECSS
T ss_pred ccEEEEEEeCCC
Confidence 67888887643
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.40 E-value=1.3 Score=38.85 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=106.8
Q ss_pred CCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-
Q 014977 56 YGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA- 131 (415)
Q Consensus 56 g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~- 131 (415)
+.+++.|+ ...+.+||..+..-.....+....... .+....+. +++.|+.+ ......+.+||+.+++....-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~-lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFWDNV-VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEETTE-EEEECCBS-SSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEECCE-EEEEeCCC-CCCcceEEEEeCCCCeEEECCCC
Confidence 34555666 356788888764432222221111111 12223344 44444432 2233689999988876543322
Q ss_pred -ccCceeEEEEcCCeEEEE--eC------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-------
Q 014977 132 -FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ------- 195 (415)
Q Consensus 132 -~~~~i~~l~~~~~~~~~~--~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------- 195 (415)
....-.++....+..+++ .+ ..+.+||..+.+-...-.............. ++.++++ |+.
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~ 165 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVC-GGSLGNNVSG 165 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEESCTTTC
T ss_pred CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEE-CCCCCCCCcc
Confidence 111122333334444444 22 4588999877654322111111111122222 3445555 432
Q ss_pred --cCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEec-CCCcccE
Q 014977 196 --RGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRR-GVDRAEI 264 (415)
Q Consensus 196 --dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~-~~~~~~v 264 (415)
-..+.+++.....-..+... ......+.+ ++++++.|+.+ .. +.+||+.+.+-. .+.. .......
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~-~~~~~p~~r~~~ 241 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWK-MVSPMPWKGVTV 241 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCC-EEEEETTTTEEE-ECCCCSCCBSCC
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCce-EEEeeCCCCcEE-ECCCCCCCccce
Confidence 23355566555433333221 111122222 66677776643 35 889998876533 2211 0011122
Q ss_pred EEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977 265 YSIALSPNVQWLAVASDK-----GTVHIFSLRVRV 294 (415)
Q Consensus 265 ~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~ 294 (415)
..+.+ ++++++.|+.+ ..+.+||+++.+
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 23333 66777777754 468888887754
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.35 E-value=1.3 Score=38.83 Aligned_cols=231 Identities=12% Similarity=0.020 Sum_probs=104.4
Q ss_pred CCCCEEEEEe-----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC---CCCCCCCeEEEEECCCCC
Q 014977 54 QDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---NSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 54 p~g~~la~g~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~~~~~~i~vwd~~~~~ 125 (415)
-++.+++.|+ -..+.+||..+..-.....+....... .+....+..++++|.. +.......+.+||+.+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3456666665 245788887764432221221111111 2222334444444331 211112568899988775
Q ss_pred EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 126 ~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
....-. ....-.++....+..+++ . -..+.+||+.+.+-...-..........+... ++.++++ |+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~ 178 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV-GGFD 178 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE-eCCC
Confidence 433221 111112233333434444 1 24688899877643322111111111122222 3455555 4433
Q ss_pred -----CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecC-CCcc
Q 014977 197 -----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRG-VDRA 262 (415)
Q Consensus 197 -----g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~-~~~~ 262 (415)
..+.+++.....-..+.. .......+.+ ++++++.|+.+ .. +.+||+.+.+-.. +... ....
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~~r~ 254 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMKHRRS 254 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCSSCCB
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEE-CCCCCCCcc
Confidence 235555554433222211 1111222333 66777777654 45 8999988765432 2111 0111
Q ss_pred cEEEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977 263 EIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV 294 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~ 294 (415)
....+.+ ++++++.|+.+ ..+.+||+++.+
T Consensus 255 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 255 ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1122222 56777777644 357888887654
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.03 E-value=1.7 Score=38.30 Aligned_cols=158 Identities=8% Similarity=-0.082 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e---C--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (415)
..|+..++..++....... .. ..+++++..+. . + ..|+..++.. .....+..+.. ..+. +.+
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~--~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--PC--IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCN--TSD 156 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--CE--EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSE--EET
T ss_pred CeEEEEeCCCCcceEeecC--Cc--cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEee--EEC
Confidence 5677778766653322222 11 24555555555 3 2 3455666543 33333433221 2233 445
Q ss_pred eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEecCCCcccEE
Q 014977 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (415)
Q Consensus 187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (415)
..|.++......|..-...+...+.+.. +... ..++|++.+|+-....+ ..|..-++..+. ...+.. . .+
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~--~~- 227 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--A--NI- 227 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--S--CE-
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--C--Cc-
Confidence 5676665445677776666655555432 2222 33569998887765443 226666765444 334432 1 23
Q ss_pred EEEeCCCCCEEEEEeCC--CeEEEEEcee
Q 014977 266 SIALSPNVQWLAVASDK--GTVHIFSLRV 292 (415)
Q Consensus 266 ~l~~spdg~~l~s~s~d--g~i~vwd~~~ 292 (415)
..|+|++.+|..++.. +.|..-+++.
T Consensus 228 -~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 -EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 3478889988866433 4455555443
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.84 E-value=2.2 Score=38.54 Aligned_cols=193 Identities=9% Similarity=0.002 Sum_probs=100.9
Q ss_pred eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-EEEEEE----ccCceeEEEEcCC----eEEEE--e----C-
Q 014977 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----FRSDVRSVKLSRD----RIVVV--L----E- 151 (415)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-~~~~~~----~~~~i~~l~~~~~----~~~~~--~----d- 151 (415)
.....+.|.+++.++++... +.|.+++ .+++ .+..+. .......|+++|+ +.+.+ . +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~------g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERP------GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEEEETT------TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEEEeCC------CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 34667889999987777543 8898887 4554 222111 1356889999997 55444 2 2
Q ss_pred ---CeEEEEEcCCc-------eee-eEEeccCCCcceEEEecCCCceEEEEeCCc------------cCeEEEEEcCCc-
Q 014977 152 ---HKIYVYSFVDL-------KLL-HQIETLANLRGLCCLSHHSSTSVLACPGLQ------------RGQVRIEHFGLN- 207 (415)
Q Consensus 152 ---~~i~iwd~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------------dg~v~i~~~~~~- 207 (415)
+.|..|+.... +.+ ..+... .......+.+.+++.++++.|.. .|.|.-.+.+++
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56778887543 111 112211 11122345556667666655431 234443333333
Q ss_pred -------ceEEE-ecCccceEEEEeCC-CCCEEEEEeCCCc--EEEEEECCCCc------------------EEEEEecC
Q 014977 208 -------MIKLI-NAHDSHIACFTLTL-DGLLLATASTRGT--LIRIFNTVDGT------------------RLQEVRRG 258 (415)
Q Consensus 208 -------~~~~~-~~~~~~i~~l~~sp-~g~~l~s~s~dg~--~I~vwd~~~~~------------------~~~~~~~~ 258 (415)
....+ .++ .....++|+| +|+++++-...+. .|.+.. .+. ++..+..
T Consensus 181 p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~- 256 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS- 256 (354)
T ss_dssp CTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-
T ss_pred CCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-
Confidence 11122 233 2346799999 6775554332211 133322 221 1222211
Q ss_pred CCcccEEEEEeC-------CCCCEEEEEeCCCeEEEEEceec
Q 014977 259 VDRAEIYSIALS-------PNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 259 ~~~~~v~~l~~s-------pdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
.......++|. .+|.++++.-..+.|...+++..
T Consensus 257 -~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 257 -ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp -CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred -CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 12356788883 46767766666677877777653
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.37 E-value=3.4 Score=38.72 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=57.1
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc---------cCceeEEEEcC----CeEEEE-e----
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------RSDVRSVKLSR----DRIVVV-L---- 150 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~---------~~~i~~l~~~~----~~~~~~-~---- 150 (415)
....+.|.+++.++++.... +.|++++..+++....... ...+..|+|+| ++.+.+ .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~g-----g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERAT-----GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CceEEEEcCCCcEEEEEcCC-----CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 45688899999888886553 4788887655654322221 24566999998 455444 2
Q ss_pred ----------CCeEEEEEcCCc--e-----eee-EEeccCCCcceEEEecCCCceEEEEeCC
Q 014977 151 ----------EHKIYVYSFVDL--K-----LLH-QIETLANLRGLCCLSHHSSTSVLACPGL 194 (415)
Q Consensus 151 ----------d~~i~iwd~~~~--~-----~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (415)
...|.-|++... + .+. .+.. ........+.+++++.+.++.|.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 135666665321 1 111 1211 11124566777777777776664
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.89 E-value=2.4 Score=35.26 Aligned_cols=148 Identities=12% Similarity=0.018 Sum_probs=86.5
Q ss_pred CceeEEEEcCCeEEEE-eCCeEEEEEcCCcee------eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC
Q 014977 134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKL------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL 206 (415)
Q Consensus 134 ~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~ 206 (415)
..+..++|+|++.+.+ .++.++-.+..+.+. -..+ +...-....++.+++++.+.++ .||.|+-++...
T Consensus 41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~I-G~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKI-GNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEE-ECSCGGGCSEEEECTTSCEEEE---ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEe-cccccccceEEEECCCCCEEEe---CCCEEEEeCCCc
Confidence 4677999999998777 888887777644211 1111 1111112356777888877655 468886544311
Q ss_pred --c------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc------EEEEEe-cCCCcccEEEEEeCC
Q 014977 207 --N------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------RLQEVR-RGVDRAEIYSIALSP 271 (415)
Q Consensus 207 --~------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------~~~~~~-~~~~~~~v~~l~~sp 271 (415)
. ....-..--..+..|.+.|+|.+.++. |+. ++-+...++. ....+- . .-..-..+.|.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~l~f~~ 191 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQG--GWDTFKFLFFSS 191 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESS--SGGGEEEEEECT
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceeccC--CcceEEEEEECC
Confidence 1 111112223567999999999877766 777 6544333221 111222 2 222455677999
Q ss_pred CCCEEEEEeCCCeEEEEEceecc
Q 014977 272 NVQWLAVASDKGTVHIFSLRVRV 294 (415)
Q Consensus 272 dg~~l~s~s~dg~i~vwd~~~~~ 294 (415)
++.+.++. +| ++|.....+
T Consensus 192 ~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 192 VGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp TSCEEEEE--TT--EEEEESCCC
T ss_pred CCcEEEEe--CC--eEEecCCcc
Confidence 99877766 77 666665543
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.72 E-value=2.1 Score=40.84 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-----------eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977 45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-----------TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (415)
.....+.++|||+++++++ +.++.|++++.... ...... .-+.......|++++....+.--|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfid--- 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFID--- 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTT---
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeec---
Confidence 3345788999999999988 99999999984221 112222 345667888999999888887666
Q ss_pred CCCeEEEEECCCC----------CEEEEEEccCceeEEEE------cCCeEEEE
Q 014977 112 PPTKVIIWDDHQS----------RCIGEFAFRSDVRSVKL------SRDRIVVV 149 (415)
Q Consensus 112 ~~~~i~vwd~~~~----------~~~~~~~~~~~i~~l~~------~~~~~~~~ 149 (415)
..|.-|++... ..+..+.-...+-.+.. .++|++++
T Consensus 399 --SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 399 --SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV 450 (638)
T ss_dssp --TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred --ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence 99999997653 45555552223333332 46677766
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.69 E-value=0.38 Score=40.07 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=42.4
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE------EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR------LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (415)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd 289 (415)
..+..++|+|+|.+.++ .+|. ++-.+..+... -..+-...-. .-..+.|.|+|.+.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence 46779999999997766 6777 77666544221 1122110011 1467899999998877 568776554
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.59 E-value=4.8 Score=37.70 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCEEEEEeC-CcEEEEEccCCceeEEEecc------CCCeeEEEEeeeC----CeEEEEecCC------
Q 014977 45 IELISVSWNQDYGCFAAGTS-CGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRC----NILALVGAGD------ 107 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~d-~~v~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~l~s~~~------ 107 (415)
...+.++|.|+|+++++-.. +.|++++..+........+. ........++++| ++.++++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999998887665 46777765443322222221 1345677899998 5555554321
Q ss_pred CCC-CCCCeEEEEECCCC--CE-----EEE-EE--ccCceeEEEEcCCeEEEE
Q 014977 108 NSQ-YPPTKVIIWDDHQS--RC-----IGE-FA--FRSDVRSVKLSRDRIVVV 149 (415)
Q Consensus 108 d~~-~~~~~i~vwd~~~~--~~-----~~~-~~--~~~~i~~l~~~~~~~~~~ 149 (415)
+.. .....|.-+++..+ +. +.. +. .......|.|.|||.+.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv 159 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY 159 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence 000 00135555554322 11 111 11 124578899999987776
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.19 E-value=4.5 Score=36.17 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=27.3
Q ss_pred EEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC------eEEEEEceecccC
Q 014977 241 IRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG------TVHIFSLRVRVVG 296 (415)
Q Consensus 241 I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------~i~vwd~~~~~~~ 296 (415)
+.+||+.+.+- +..+.. ....-..+. .++++++.|+.++ .|.++++++++..
T Consensus 287 ~~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 287 TDIHLWHNGKWDKSGELSQ--GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CEEEECC---CEEEEECSS--CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EEEEecCCCceeeCCCCCC--CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 77899876543 323322 111112222 3677888888653 4667788887754
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.02 E-value=4.1 Score=35.31 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=89.9
Q ss_pred CCCEEEEEe-C-----CcEEEEEccCCc---eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977 55 DYGCFAAGT-S-----CGFRIYNCEPFK---ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (415)
Q Consensus 55 ~g~~la~g~-d-----~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~ 125 (415)
++.+++.|+ + +.+.+||..+.. -.....+........ +... ++.+++.++.+.......+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG-ATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee-EEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 567777776 4 357888887654 322222222211111 2222 3444454443322123579999988876
Q ss_pred EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977 126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (415)
Q Consensus 126 ~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (415)
....-. ....-.++....+..+++ . -..+.+||+.+.+-...-.............. ++.++++ |+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~~ 216 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVV-GGFD 216 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEE-eCCC
Confidence 544332 121222333333444444 1 35688999877654332111111111122222 3445555 4443
Q ss_pred -----CeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCc
Q 014977 197 -----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGT 250 (415)
Q Consensus 197 -----g~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~ 250 (415)
..+.+++.....-..+... ......+.+ ++++++.|+.++ . |.+||+.+.+
T Consensus 217 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~ 280 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSS-IECYDPIIDS 280 (301)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEE-EEEEETTTTE
T ss_pred CCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCccccc-EEEEcCCCCe
Confidence 3466666655443333211 111122222 667777777653 4 7888887664
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.21 E-value=5.6 Score=34.88 Aligned_cols=124 Identities=7% Similarity=-0.063 Sum_probs=70.0
Q ss_pred CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC---CccCeEEEEEcCCcceEEEecCccceEEEEeCCCC
Q 014977 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG 228 (415)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g 228 (415)
..|+..++...+.. .+... ....+++. +..|+++. ..+..|+.-+.++.....+..+.. .+++++|
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~--g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDPD----PCIYASLI--GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEECS----CEEEEEEE--TTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-EeecC----CccEEEEe--CCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence 46777777655432 22211 12345554 44565543 234455556666766666665543 4567888
Q ss_pred CEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--eEEEEEceec
Q 014977 229 LLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVR 293 (415)
Q Consensus 229 ~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~ 293 (415)
+.|+-.+. ... |.+-++..+.....+.+ ... ..++|++.+|+-....+ .|..-+++..
T Consensus 157 ~~iy~t~~g~~~-Iy~~~l~g~~~~~l~~~-----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 157 RYFYYNNPKNGQ-LYRYDTASQSEALFYDC-----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp TEEEEECTTTCC-EEEEETTTTEEEEEECS-----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred CEEEEEeCCCce-EEEEECCCCCEEEEeCC-----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 88886665 556 88888866554433332 122 23559999988765443 4555455443
No 335
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.35 E-value=6.7 Score=34.04 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=88.9
Q ss_pred CCCEEEEEe-C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CCCCCCeEEEEECCCCCEEE
Q 014977 55 DYGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQSRCIG 128 (415)
Q Consensus 55 ~g~~la~g~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~~~~i~vwd~~~~~~~~ 128 (415)
++.+++.|+ + ..+.+||..+..-.....+.......... ... +.+++.|+.+ .......+.+||+.+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC-AAE-GKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE-EET-TEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE-EEC-CEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 667777776 4 55778888765433332332222221222 223 4444444432 12233679999988876443
Q ss_pred EEE--ccCceeEEEEcCCeEEEE--e---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 129 EFA--FRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 129 ~~~--~~~~i~~l~~~~~~~~~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
.-. ....-.++....+..+++ . -..+.+||+.+.+-...-.............. ++.++++ |+.
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~ 209 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAV-GGQ 209 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEE-eCC
Confidence 322 111222333334444444 1 35588999877643322111111111122222 3445555 444
Q ss_pred cC-----eEEEEEcCCcceEEEe---cCccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCc
Q 014977 196 RG-----QVRIEHFGLNMIKLIN---AHDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGT 250 (415)
Q Consensus 196 dg-----~v~i~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~ 250 (415)
++ .+.+++.....-..+. ........+.+ ++++++.|+.+ .. +.+||+.+.+
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~ 274 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK 274 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence 32 3455555443322221 11122223333 66777777754 45 8888987764
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.32 E-value=7.8 Score=34.73 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=44.4
Q ss_pred eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-------ccCceeEEEEcCC----eEEEE-----eCC
Q 014977 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-------FRSDVRSVKLSRD----RIVVV-----LEH 152 (415)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~----~~~~~-----~d~ 152 (415)
....+.|.+++.++++.... |.|++++..+++...... .......|+++|+ +.+.+ .++
T Consensus 33 ~P~~ia~~pdG~llVter~~-----G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDE-----ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp SEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CceEEEEcCCCcEEEEEecC-----CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 45678889999888886644 899999866665422211 2456789999985 44433 245
Q ss_pred eEEEEEcCC
Q 014977 153 KIYVYSFVD 161 (415)
Q Consensus 153 ~i~iwd~~~ 161 (415)
.|.-|.+..
T Consensus 108 ~v~R~~~~~ 116 (347)
T 3das_A 108 RIVRMLYDE 116 (347)
T ss_dssp EEEEEEBCT
T ss_pred EEEEEEeCC
Confidence 666666644
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.88 E-value=7.7 Score=33.88 Aligned_cols=227 Identities=14% Similarity=0.092 Sum_probs=101.2
Q ss_pred EEEEeCCcEEEEEccCCceeEEEeccCC-CeeEEEEeeeCCeEEEEecC-----CCCCCCCCeEEEEECCCCCEEEEEEc
Q 014977 59 FAAGTSCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAG-----DNSQYPPTKVIIWDDHQSRCIGEFAF 132 (415)
Q Consensus 59 la~g~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~-----~d~~~~~~~i~vwd~~~~~~~~~~~~ 132 (415)
++.|+ ..+.+||..+.+-.. ..+... .....++....+..++++|. .........+.+||..+++....-..
T Consensus 8 ~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 33444 678889988755432 223111 22223333344455555552 11000112478889887764322111
Q ss_pred c--CceeEEEEcCCeEEEE--e--------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-c---
Q 014977 133 R--SDVRSVKLSRDRIVVV--L--------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-R--- 196 (415)
Q Consensus 133 ~--~~i~~l~~~~~~~~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-d--- 196 (415)
. ..-.+++...+..+++ . -..+.+||..+.+-...-..........+... ++.++++ |+. +
T Consensus 86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVI-GGKGSDRK 162 (315)
T ss_dssp SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCBCTTSC
T ss_pred CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEE-eCCCCCCc
Confidence 1 1112233333444444 1 14588899877643221111111112222222 3345555 433 2
Q ss_pred --CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977 197 --GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (415)
Q Consensus 197 --g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (415)
..+.+++.....-..+.. .......+.+ ++++++.|+.++. .+.+||+.+.+-...-...........+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 245555554432222211 1111122222 6677777776541 2888998776543221111011112222
Q ss_pred EeCCCCCEEEEEeCCC--------------eEEEEEceecc
Q 014977 268 ALSPNVQWLAVASDKG--------------TVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~dg--------------~i~vwd~~~~~ 294 (415)
.+ ++++++.|+.++ .+.+||+++++
T Consensus 241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 23 567777776532 36778877654
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.73 E-value=0.82 Score=40.97 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=63.3
Q ss_pred eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe-c--CCCceEEEEeCCccCeEEEEEcCCc-ceEEEec----
Q 014977 145 RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS-H--HSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA---- 214 (415)
Q Consensus 145 ~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~---- 214 (415)
+.+++ .||.|+-+|..+|+.+..++.... ...+... + ..++..++.....||.+..++.... ....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 44444 699999999999999988866410 0111111 0 0122333332246888877654332 2222211
Q ss_pred CccceEE---EEe-C----CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977 215 HDSHIAC---FTL-T----LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (415)
Q Consensus 215 ~~~~i~~---l~~-s----p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (415)
...++.. ... . ..+..+++|+.+|. +...|+.+|+.+.++...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence 1112211 001 0 13457889999999 999999999999998753
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.53 E-value=13 Score=35.72 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=62.3
Q ss_pred EEecCCCceEEEEeCCccCeEEEEEcCC-------cc-------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977 179 CLSHHSSTSVLACPGLQRGQVRIEHFGL-------NM-------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (415)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------~~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (415)
.+..+|+|++++++|-.+.++.+.+... +. ..... -.-.....+|.++|....+---|.. |.-|
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq-vvkW 404 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ-VVKW 404 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE-EEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce-EEEE
Confidence 3445677889999898999999977653 10 11112 2334567889999965566668888 9999
Q ss_pred ECCCC----------cEEEEEecCCCcccEEEEEe------CCCCCEEEEEe
Q 014977 245 NTVDG----------TRLQEVRRGVDRAEIYSIAL------SPNVQWLAVAS 280 (415)
Q Consensus 245 d~~~~----------~~~~~~~~~~~~~~v~~l~~------spdg~~l~s~s 280 (415)
++... ..+.++..+ - .+-.+.- .+||++|++..
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~--Y-qpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVH--Y-QPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECS--S-CEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eccHHHHHhcCccCCeeeeccccc--c-CCcccccCCCccCCCCccEEEEec
Confidence 98653 455666653 2 1223322 46788877764
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.76 E-value=9.5 Score=33.17 Aligned_cols=189 Identities=10% Similarity=-0.015 Sum_probs=84.8
Q ss_pred CCCEEEEEe-C---------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977 55 DYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (415)
Q Consensus 55 ~g~~la~g~-d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~ 124 (415)
++.+++.|+ + +.+.+||..+..-.....+........ +... ++.+++.|+.+.......+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG-VGVI-DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE-EEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE-EEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 566666655 2 457778877644222222211111111 1222 344444444321111257889998877
Q ss_pred CEEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977 125 RCIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (415)
Q Consensus 125 ~~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (415)
+....-. ....-.++....+..+++ . -..+.+||+.+.+-...-..........+... ++.++++ |+.
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~ 224 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA-GGY 224 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE-eCC
Confidence 5433222 111122333334444444 1 25688999877643322111111111122222 3455555 443
Q ss_pred c-----CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcE
Q 014977 196 R-----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTR 251 (415)
Q Consensus 196 d-----g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~ 251 (415)
+ ..+.+++.....-..+.. .......+.+ ++++++.|+.+ .. +.+||+.+.+-
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W 290 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDS-VECYDPDTDTW 290 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCE-EEEEETTTTEE
T ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccce-EEEEcCCCCEE
Confidence 3 345666655433222221 1111122222 56677777654 34 77888876543
No 341
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=86.81 E-value=14 Score=31.77 Aligned_cols=188 Identities=14% Similarity=0.106 Sum_probs=86.8
Q ss_pred CCCEEEEEe-C-----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977 55 DYGCFAAGT-S-----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (415)
Q Consensus 55 ~g~~la~g~-d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~ 128 (415)
++.+++.|+ + ..+.+||..+..-.....+....... .+....+..++++|... ......+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEee
Confidence 667777776 3 34778887765433322222211111 12222344444444321 1111468889988776443
Q ss_pred EEE--ccCceeEEEEcCCeEEEE--e-------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977 129 EFA--FRSDVRSVKLSRDRIVVV--L-------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (415)
Q Consensus 129 ~~~--~~~~i~~l~~~~~~~~~~--~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (415)
.-. ....-.++....+..+++ . -..+.+||+.+.+-...-.............. ++.++++ |+.++
T Consensus 139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~ 215 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAV-GGHDG 215 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBSS
T ss_pred cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEE-CCCCC
Confidence 322 112222333334444444 1 24588999877654332111111111122222 3455555 44432
Q ss_pred -----eEEEEEcCCcceEEEecCc---cceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCc
Q 014977 198 -----QVRIEHFGLNMIKLINAHD---SHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGT 250 (415)
Q Consensus 198 -----~v~i~~~~~~~~~~~~~~~---~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~ 250 (415)
.+.+++.....-..+.... .....+.+ ++++++.|+.++ . +.+||+.+.+
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~ 278 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLAS-VEYYNPTTDK 278 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCccccc-EEEEcCCCCe
Confidence 4556665554333332211 11112222 667777776543 4 7888887664
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.77 E-value=26 Score=34.70 Aligned_cols=197 Identities=12% Similarity=-0.003 Sum_probs=91.9
Q ss_pred CCCCEEEEEe-C----CcEEEEEccCCceeEEE-e-----ccCCCeeEEEEeeeCCeEEEEecCCCCCC-CCCeEEEEEC
Q 014977 54 QDYGCFAAGT-S----CGFRIYNCEPFKETFRR-D-----LKSGGFRIVEMLFRCNILALVGAGDNSQY-PPTKVIIWDD 121 (415)
Q Consensus 54 p~g~~la~g~-d----~~v~iw~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~s~~~d~~~-~~~~i~vwd~ 121 (415)
-++.+++.|+ + +.+.+||..+..-.... . +..............++.+++.||.+... .-+.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 5677777776 3 34778888765433222 1 11111222222232144444444433111 2256899998
Q ss_pred CCCCEEEEEE--ccCceeEEEEcCCeEEEEe-----CCeEEEEEcCCceeeeEEe---ccCCCcceEEEecCCC-ceEEE
Q 014977 122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVVL-----EHKIYVYSFVDLKLLHQIE---TLANLRGLCCLSHHSS-TSVLA 190 (415)
Q Consensus 122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~l~ 190 (415)
.+.+....-. ....-.+++...++.+++. ++.+.+||..+.+-...-. .........++..+.+ +.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8865433221 1222223344234544442 2279999988765332211 1111111222332323 45666
Q ss_pred EeCCc--c-----CeEEEEEcCCcc------eEEEecC--cc-ceEEEEeCCCCCEEEEEeC--------CCcEEEEEEC
Q 014977 191 CPGLQ--R-----GQVRIEHFGLNM------IKLINAH--DS-HIACFTLTLDGLLLATAST--------RGTLIRIFNT 246 (415)
Q Consensus 191 ~~g~~--d-----g~v~i~~~~~~~------~~~~~~~--~~-~i~~l~~sp~g~~l~s~s~--------dg~~I~vwd~ 246 (415)
+ |+. + ..+.+++..... -..+... .. .-.+++...++++++.|+. ... |.+||+
T Consensus 556 ~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~yd~ 633 (695)
T 2zwa_A 556 L-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISLDP 633 (695)
T ss_dssp E-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEEET
T ss_pred E-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEEEC
Confidence 5 433 2 346666655443 2222221 11 1112233333777777774 345 899999
Q ss_pred CCCcEE
Q 014977 247 VDGTRL 252 (415)
Q Consensus 247 ~~~~~~ 252 (415)
.+.+-.
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 877644
No 343
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.58 E-value=21 Score=32.40 Aligned_cols=164 Identities=8% Similarity=0.085 Sum_probs=87.6
Q ss_pred CeEEEEECCCC--CEEEEEEc-------cCceeEEEEc---CC----eEEE-E---eCCeEEEEEcCCceeeeEEeccCC
Q 014977 114 TKVIIWDDHQS--RCIGEFAF-------RSDVRSVKLS---RD----RIVV-V---LEHKIYVYSFVDLKLLHQIETLAN 173 (415)
Q Consensus 114 ~~i~vwd~~~~--~~~~~~~~-------~~~i~~l~~~---~~----~~~~-~---~d~~i~iwd~~~~~~~~~~~~~~~ 173 (415)
-+|.+||+.++ +.++.+.. ...+.++.+. ++ +.++ + ....|.|+|+.+++.-+.+.....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 58999999999 99999874 3457788887 22 2222 2 467899999988776554421111
Q ss_pred C----------------cceEEEecCCC----ceEEEEeCCccCeE-EEE--EcC-C---cceEEEecCc---cceEEEE
Q 014977 174 L----------------RGLCCLSHHSS----TSVLACPGLQRGQV-RIE--HFG-L---NMIKLINAHD---SHIACFT 223 (415)
Q Consensus 174 ~----------------~~~~~~~~~~~----~~~l~~~g~~dg~v-~i~--~~~-~---~~~~~~~~~~---~~i~~l~ 223 (415)
+ ..+..++.+++ ++.|.+..-....+ .|- .++ . ..++.+ +.. ..-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 1 12333333333 33444322222122 221 011 1 112222 222 2334566
Q ss_pred eC-CCCCEEEEEeCCCcEEEEEECCC-C---cEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 224 LT-LDGLLLATASTRGTLIRIFNTVD-G---TRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 224 ~s-p~g~~l~s~s~dg~~I~vwd~~~-~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
+. .+|.++++--.... |..|+..+ . +....+.....-..+..+.+.++|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 67877777777778 99999865 1 122333321122356777777666544444
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=85.10 E-value=21 Score=31.94 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=31.5
Q ss_pred eEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE--------ccCceeEEEEcCC
Q 014977 89 RIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRD 144 (415)
Q Consensus 89 ~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~ 144 (415)
....+.|.+++. ++++... +.|++++. .++....+. .......|+++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~------G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRG------GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEEEETT------TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEEEeCC------ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCC
Confidence 356788999988 7776543 88999884 333211111 1345689999995
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.20 E-value=38 Score=33.53 Aligned_cols=177 Identities=7% Similarity=-0.030 Sum_probs=85.9
Q ss_pred CeEEEEECCCCCEEEEE-E-------ccCceeEEEEcC-CeEEE-E--e------CCeEEEEEcCCceeeeEEeccCCCc
Q 014977 114 TKVIIWDDHQSRCIGEF-A-------FRSDVRSVKLSR-DRIVV-V--L------EHKIYVYSFVDLKLLHQIETLANLR 175 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~-~-------~~~~i~~l~~~~-~~~~~-~--~------d~~i~iwd~~~~~~~~~~~~~~~~~ 175 (415)
+.+.+||..+++....- . ....-.+++... ++.++ + . -+.+.+||..+.+-...-.... +.
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-Cc
Confidence 57889998887654433 1 111123344442 44444 3 1 1358889987754332211111 11
Q ss_pred ceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEec------CccceEEEEeCCC-CCEEEEEeC--C-----Cc
Q 014977 176 GLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINA------HDSHIACFTLTLD-GLLLATAST--R-----GT 239 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~------~~~~i~~l~~sp~-g~~l~s~s~--d-----g~ 239 (415)
...+...-.++.++++ |+.++ .+.+++.....-..+.. ......++.+..+ +++++.|+. + ..
T Consensus 491 ~~h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 491 FRHSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp BSCEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred ccceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 1122222114556666 44333 46666665543332221 1122233555555 667777765 2 34
Q ss_pred EEEEEECCCCcE-----EEEEecC--CCcccEEEEEeCCCCCEEEEEeC--------CCeEEEEEceecc
Q 014977 240 LIRIFNTVDGTR-----LQEVRRG--VDRAEIYSIALSPNVQWLAVASD--------KGTVHIFSLRVRV 294 (415)
Q Consensus 240 ~I~vwd~~~~~~-----~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~--------dg~i~vwd~~~~~ 294 (415)
+.+||+.+.+. -..+... ........+.+ .++++++.|+. ...|.+||+.+++
T Consensus 570 -v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 570 -AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp -EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred -EEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 88999987761 1222210 01111222222 33677777764 2458888887764
No 346
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.66 E-value=9 Score=37.10 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=42.3
Q ss_pred eEEEEeCCCCCEEEEEeCC------------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 219 IACFTLTLDGLLLATASTR------------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 219 i~~l~~sp~g~~l~s~s~d------------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
.-.|+|+|.|.+++.-..+ .. +.+.+..+++..+-+... ..+.++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~-~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccce-EEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 3568999999966654322 23 666677778776666554 56799999999999877654
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=78.46 E-value=33 Score=29.76 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=99.4
Q ss_pred EEEEEeCCcEEEEEccCCceeEEEeccC-CCeeEEEEeeeCCeEEEEecCC-CCC----CCCCeEEEEECCCCCEEEEEE
Q 014977 58 CFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGD-NSQ----YPPTKVIIWDDHQSRCIGEFA 131 (415)
Q Consensus 58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~-d~~----~~~~~i~vwd~~~~~~~~~~~ 131 (415)
+++.|+ ..+.+||..+.+-.. ..+.. ......++....+..++++|.. +.. .....+.+||..+++....-.
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 344444 347788887655332 22211 1122233334444555555521 100 011237888987775433211
Q ss_pred --ccCceeEEEEcCCeEEEE--eC-------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-----
Q 014977 132 --FRSDVRSVKLSRDRIVVV--LE-------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ----- 195 (415)
Q Consensus 132 --~~~~i~~l~~~~~~~~~~--~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----- 195 (415)
....-.++....+..+++ .+ ..+.+||+.+.+-...-..........+... ++.++++.|..
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKC 173 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCB
T ss_pred CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCc
Confidence 111122333334444444 22 3578888877653322111111111112222 34555553321
Q ss_pred cCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecC-CCcccEEEE
Q 014977 196 RGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRG-VDRAEIYSI 267 (415)
Q Consensus 196 dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~-~~~~~v~~l 267 (415)
-..+.+++.....-..+... ......+.+ ++++++.|+.++. .+.+||+.+.+-.. +... ........+
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTEFPQERSSISLV 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCCCSSCCBSCEEE
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCCCCCcccceEEE
Confidence 12355566554433332211 111122222 5677777765321 27789988765432 2110 011111222
Q ss_pred EeCCCCCEEEEEeCC--------------CeEEEEEceecc
Q 014977 268 ALSPNVQWLAVASDK--------------GTVHIFSLRVRV 294 (415)
Q Consensus 268 ~~spdg~~l~s~s~d--------------g~i~vwd~~~~~ 294 (415)
. -++++++.|+.+ ..+.+||+++.+
T Consensus 251 ~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 251 S--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp E--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred E--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2 256666666643 347777876654
No 348
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=75.51 E-value=17 Score=34.82 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=42.5
Q ss_pred ceEEEEeCCCCCEEEEEeC------------CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977 218 HIACFTLTLDGLLLATAST------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (415)
....|.|.++|.+.+.... ... |..++..+++....+... ....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~-v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCce-EEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEE
Confidence 4567999999987663321 124 777777778876555432 34579999999999988765
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.24 E-value=25 Score=36.42 Aligned_cols=75 Identities=9% Similarity=0.153 Sum_probs=47.9
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC---cccEEEEEeCC-CCCEEEEE---eCCCeEEEEEc
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD---RAEIYSIALSP-NVQWLAVA---SDKGTVHIFSL 290 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~---~~~v~~l~~sp-dg~~l~s~---s~dg~i~vwd~ 290 (415)
.+.+++..++..++++-+.|+. +|+|++.+++++.+..-... ..........| .+.+|.+- ..+|..++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 4567777788889999999999 99999999998877542100 01111122233 23333332 34678888887
Q ss_pred eec
Q 014977 291 RVR 293 (415)
Q Consensus 291 ~~~ 293 (415)
...
T Consensus 316 ~~~ 318 (950)
T 4gq2_M 316 NAN 318 (950)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.05 E-value=67 Score=29.91 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=34.6
Q ss_pred cceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCC---cEEEEEecC-------CCcccEEEEEeCCC
Q 014977 217 SHIACFTLTLDGL-LLATASTRGTLIRIFNTVDG---TRLQEVRRG-------VDRAEIYSIALSPN 272 (415)
Q Consensus 217 ~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~-------~~~~~v~~l~~spd 272 (415)
.....|+|.|+|. .|+++...|. |++++.... +.+..+... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~-i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGY-VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTE-EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCce-EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4557899999996 4555677898 999975322 122222210 01346789999996
No 351
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=69.31 E-value=55 Score=28.20 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=27.6
Q ss_pred CeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--e------CCeEEEEEcCCcee
Q 014977 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--L------EHKIYVYSFVDLKL 164 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~------d~~i~iwd~~~~~~ 164 (415)
..+.+||+.+++-...-. ....-.++....+..+++ . -..+.+||+.+.+-
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 678999988775432211 111222333344444444 2 24689999877643
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.51 E-value=84 Score=29.26 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=56.6
Q ss_pred ceEEEecCCCce--EEEEeCCccCeEEEEEcCCc----ceEEEe---------cCccceEEEEeCCC----CCEEEEEeC
Q 014977 176 GLCCLSHHSSTS--VLACPGLQRGQVRIEHFGLN----MIKLIN---------AHDSHIACFTLTLD----GLLLATAST 236 (415)
Q Consensus 176 ~~~~~~~~~~~~--~l~~~g~~dg~v~i~~~~~~----~~~~~~---------~~~~~i~~l~~sp~----g~~l~s~s~ 236 (415)
....+++.|++. ++++ ...|.|++.+..+. .+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~--er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFIL--EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEE--ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEE--eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 345666666663 6654 36788888754432 122111 11456788999996 444443322
Q ss_pred --C----------CcEEEEEECCC----------CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977 237 --R----------GTLIRIFNTVD----------GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (415)
Q Consensus 237 --d----------g~~I~vwd~~~----------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (415)
+ .. |.-|.+.. .+.+..+...........|+|.|||.+.++.++.
T Consensus 93 ~~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13 44455532 1234444321122346889999999877766653
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=62.80 E-value=73 Score=27.24 Aligned_cols=220 Identities=12% Similarity=-0.006 Sum_probs=107.1
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS- 124 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~- 124 (415)
.|..++.-....++ .. ||.|..|-.....++-... .....+..+.-.....+++ . + +.|..|-....
T Consensus 25 ~i~~ia~G~~h~~~-l~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~hs~~l--~-~-----G~v~~wG~n~~G 92 (282)
T 3qhy_B 25 GVDAIAGGYFHGLA-LK-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYHSLAL--K-D-----GEVIAWGGNEDG 92 (282)
T ss_dssp SCCEEEECSSEEEE-EE-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSEEEEE--E-T-----TEEEEEECCTTS
T ss_pred CCcEEEeCCCeEEE-EE-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCEEEEE--E-C-----CEEEEeeCCCCC
Confidence 46666655443333 33 8888888765433221100 1112344444444444444 2 4 88888874432
Q ss_pred CEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc
Q 014977 125 RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF 204 (415)
Q Consensus 125 ~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~ 204 (415)
+.-........|..++...+..+++.++.|+.|-......+..-.... ..+..++.-... .++. .+|.|+.|-.
T Consensus 93 qlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~--~~i~~i~~G~~~-~~~l---~~G~v~~wG~ 166 (282)
T 3qhy_B 93 QTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQ--SGVTALDGGVYT-ALAV---KNGGVIAWGD 166 (282)
T ss_dssp TTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGG--SSEEEEEECSSE-EEEE---ETTEEEEEEC
T ss_pred CCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCC--CCeEEEEcccCE-EEEE---ECCEEEEecC
Confidence 211001123567788877776665569999999865422221110111 134444443332 3333 2688888765
Q ss_pred CCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977 205 GLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (415)
Q Consensus 205 ~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (415)
... .+..-..-...|..|+...+.. ++. .||. |+.|-......+. +... ....|..++-... ..++. . ||
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~-v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~-h~~al-~-~g 237 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGK-VIAWGDNRYKQTT-VPTE-ALSGVSAIASGEW-YSLAL-K-NG 237 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTE-EEEEECCTTSTTC-CCGG-GGSSCCEEEECSS-CEEEE-E-TT
T ss_pred CCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCe-EEEEECCCCCCCC-CCcc-cCCCceEEEcCCC-EEEEE-E-CC
Confidence 431 1100011134566776654433 333 4888 9999754321111 1110 1234666665443 33333 3 99
Q ss_pred eEEEEEcee
Q 014977 284 TVHIFSLRV 292 (415)
Q Consensus 284 ~i~vwd~~~ 292 (415)
.|+.|=...
T Consensus 238 ~v~~wG~n~ 246 (282)
T 3qhy_B 238 KVIAWGSSR 246 (282)
T ss_dssp EEEEESTTC
T ss_pred EEEEecCCC
Confidence 898886443
No 354
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=61.93 E-value=83 Score=27.59 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=26.0
Q ss_pred CeEEEEECCCCCEEEEEEc--cCce-eEEEEcCCeEEEE--e------CCeEEEEEc
Q 014977 114 TKVIIWDDHQSRCIGEFAF--RSDV-RSVKLSRDRIVVV--L------EHKIYVYSF 159 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~--~~~i-~~l~~~~~~~~~~--~------d~~i~iwd~ 159 (415)
..+.+||+.+.+....-.. ...- .++....+..+++ . ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 5899999888765443332 2222 3445555555554 1 345777876
No 355
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=58.86 E-value=71 Score=31.38 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=44.1
Q ss_pred ceEEEEe----CCCCC--EEEEEeCCCcEEEEEECCCCc-------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 218 HIACFTL----TLDGL--LLATASTRGTLIRIFNTVDGT-------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 218 ~i~~l~~----sp~g~--~l~s~s~dg~~I~vwd~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
..+.|+. .++|+ .+..|..+|..+++.-...+. .+.++.......+|..|.++++..+|.+++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 3445544 34554 577899999855565433221 2333443335568999999999999999998875
Q ss_pred EEE
Q 014977 285 VHI 287 (415)
Q Consensus 285 i~v 287 (415)
++|
T Consensus 493 ~kV 495 (667)
T 4gz8_A 493 AQL 495 (667)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.19 E-value=67 Score=31.77 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=44.7
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC---C-------CCEEEEEe--CCCeE
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP---N-------VQWLAVAS--DKGTV 285 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp---d-------g~~l~s~s--~dg~i 285 (415)
.|.++.+ +..+|++-+.|.. +|+|++++++++.+..-......... ...| . +.++++=. ..|..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~-LRiWsL~t~~lv~t~DL~~~~~~~~s-~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~F 298 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCH-LKIWDLTSFTLIQDYDMVSQSDSDPS-HFRKVEAVGEYLSLYNNTLVTLLPLENGLF 298 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCE-EEEEETTTTEEEEEEETTTTSCCCSS-CCCCCCSCCCCEEESSSEEEEEETTTTCEE
T ss_pred eEEEecc--CCcEEEEEEcCCe-EEEEEcCCCceEEeeccccCcccccc-ccCcccCcchhHhheeeEEEEEecCCCCeE
Confidence 3454444 4679999999999 99999999998877654211100000 0111 1 24555433 56899
Q ss_pred EEEEceecc
Q 014977 286 HIFSLRVRV 294 (415)
Q Consensus 286 ~vwd~~~~~ 294 (415)
++|++....
T Consensus 299 k~~~l~~~~ 307 (729)
T 3f7f_A 299 QMGTLLVDS 307 (729)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEEcC
Confidence 999997654
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.18 E-value=78 Score=32.69 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec
Q 014977 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL 83 (415)
Q Consensus 44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~ 83 (415)
...|.+++..++..++.+-+ |+.+|||++.+++.+....+
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 34678888888888988877 99999999999877666554
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.63 E-value=18 Score=38.22 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (415)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~ 297 (415)
.+.+++..++..+|++-+.|++++||++.++++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 34455666788999999999999999999997643
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.47 E-value=1.4e+02 Score=26.96 Aligned_cols=83 Identities=6% Similarity=-0.008 Sum_probs=54.9
Q ss_pred CCCceEEEEEeCCCCEEEEEe---C-------------CcEEEEEccCC--ceeEEEeccC----CCeeEEEEeee---C
Q 014977 43 DEIELISVSWNQDYGCFAAGT---S-------------CGFRIYNCEPF--KETFRRDLKS----GGFRIVEMLFR---C 97 (415)
Q Consensus 43 h~~~V~~l~~sp~g~~la~g~---d-------------~~v~iw~~~~~--~~~~~~~~~~----~~~~~~~~~~~---~ 97 (415)
+--.|..+...+++++-+.-+ + -.|.+||+.+. +.+.+..|.. .......+..+ +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 455788999988888666432 2 14678999998 6666666522 23345555555 1
Q ss_pred -----CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977 98 -----NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF 130 (415)
Q Consensus 98 -----~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~ 130 (415)
++.+.++-... ..|.|+|+.+++.-+..
T Consensus 165 ~~~c~~~~aYItD~~~-----~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 165 KGDCSETFVYITNFLR-----GALFIYDHKKQDSWNVT 197 (381)
T ss_dssp TTTSCSEEEEEEETTT-----TEEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEEcCCC-----CcEEEEECCCCcEEEEc
Confidence 45666665544 89999999988766554
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.18 E-value=21 Score=37.85 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=31.7
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (415)
.+.+++..++..++++-+.|+. +|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEeec
Confidence 3445566678889999999999 9999999999988765
No 361
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=40.05 E-value=59 Score=30.65 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=42.9
Q ss_pred ceEEEEeCC----CCC--EEEEEeCCCcEEEEEECCCCc-------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977 218 HIACFTLTL----DGL--LLATASTRGTLIRIFNTVDGT-------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (415)
Q Consensus 218 ~i~~l~~sp----~g~--~l~s~s~dg~~I~vwd~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (415)
..++|+... ++. .+..|..+|..+++.-...+. .+.++.......+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 345555442 243 467788999844555433221 2223333213468999999999999999999885
Q ss_pred EEE
Q 014977 285 VHI 287 (415)
Q Consensus 285 i~v 287 (415)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 362
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=36.59 E-value=2e+02 Score=24.52 Aligned_cols=109 Identities=10% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCCEEEEEe-C-------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977 55 DYGCFAAGT-S-------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (415)
Q Consensus 55 ~g~~la~g~-d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~ 126 (415)
++++++.|+ + ..+.+||..+..-.....+... ..-.++....+..++++|..+.......+.+||+.+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 567777776 3 2366777765443322222111 111122223344444443221111125799999888764
Q ss_pred EEEEE--ccCceeEEEEcCCeEEEE---e----CCeEEEEEcCCcee
Q 014977 127 IGEFA--FRSDVRSVKLSRDRIVVV---L----EHKIYVYSFVDLKL 164 (415)
Q Consensus 127 ~~~~~--~~~~i~~l~~~~~~~~~~---~----d~~i~iwd~~~~~~ 164 (415)
...-. ....-.++....+..+++ . ...+.+||+.+.+-
T Consensus 188 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 43322 112222334444444444 1 24577889876543
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.70 E-value=1.7e+02 Score=28.92 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=28.0
Q ss_pred CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec
Q 014977 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL 83 (415)
Q Consensus 45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~ 83 (415)
..|.++.+ +..++++-+ |..+|+|++.+++.+....+
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45665555 366777777 99999999999887777666
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=34.33 E-value=3.5e+02 Score=26.70 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=87.0
Q ss_pred CeEEEEECCCCCEEEE-EEcc--C------ceeEEEEcC-CeEEEEe------------CCeEEEEEcCCce--eeeEEe
Q 014977 114 TKVIIWDDHQSRCIGE-FAFR--S------DVRSVKLSR-DRIVVVL------------EHKIYVYSFVDLK--LLHQIE 169 (415)
Q Consensus 114 ~~i~vwd~~~~~~~~~-~~~~--~------~i~~l~~~~-~~~~~~~------------d~~i~iwd~~~~~--~~~~~~ 169 (415)
..++++|+.+++.+.. +... . ....++|.. ++.++.. ...|+.|.+.+.. -...+.
T Consensus 156 ~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~ 235 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFE 235 (711)
T ss_dssp EEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEE
T ss_pred eEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEec
Confidence 6899999999887631 1100 0 012346654 3433321 2578999886542 233444
Q ss_pred ccCCCcceEE-EecCCCce---EEEEeC-C-ccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEE-------
Q 014977 170 TLANLRGLCC-LSHHSSTS---VLACPG-L-QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATA------- 234 (415)
Q Consensus 170 ~~~~~~~~~~-~~~~~~~~---~l~~~g-~-~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~------- 234 (415)
.......+.. ...++... .++..+ + ....+.+.+... .....+..... ..+..+.++.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 313 (711)
T 4hvt_A 236 VPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKFK 313 (711)
T ss_dssp CCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEET
T ss_pred cCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc--ceEeeeECCEEEEEECcccccc
Confidence 4444332222 23333332 233322 1 223444433331 22222222211 112334456555532
Q ss_pred ---eCCCcEEEEEECCCC-------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe--EEEEEceecc
Q 014977 235 ---STRGTLIRIFNTVDG-------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT--VHIFSLRVRV 294 (415)
Q Consensus 235 ---s~dg~~I~vwd~~~~-------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--i~vwd~~~~~ 294 (415)
...+. |.+.|+.++ .....+-.+.....+..+.|..+ .++++...++. |.++++.+++
T Consensus 314 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 314 SHNIKAGS-LVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp TEEECTTC-EEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred cccCCCCe-EEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 23567 888888663 12223222224457888999876 56777777774 6677766553
No 365
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=34.07 E-value=1.9e+02 Score=24.31 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (415)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~ 293 (415)
..|.++....++.+|+.++..|.++...+..-
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 35666644345677889999999999887654
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.55 E-value=4.2e+02 Score=26.13 Aligned_cols=238 Identities=12% Similarity=0.076 Sum_probs=114.4
Q ss_pred ceEEEE-EeCCCCEEEEEe--CC----cEEEEEccCCceeEEEecc-CCCe------eEEEEeeeCCeEEEEecCCCC--
Q 014977 46 ELISVS-WNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLK-SGGF------RIVEMLFRCNILALVGAGDNS-- 109 (415)
Q Consensus 46 ~V~~l~-~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~l~s~~~d~-- 109 (415)
....+. ++|++++++.+- .| .++++|+++.+.+ ...+. .... ....+.|..+..++++....+
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~-~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV-KNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC-TTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC-CCCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 456666 899999988754 22 4899999885543 12221 1111 001123433333444321110
Q ss_pred ---CCCCCeEEEEECCCCC--EEEEEE--ccCceeEEEEcCCeE-----EEE------eCCeEEEEEcCC--ceeeeEEe
Q 014977 110 ---QYPPTKVIIWDDHQSR--CIGEFA--FRSDVRSVKLSRDRI-----VVV------LEHKIYVYSFVD--LKLLHQIE 169 (415)
Q Consensus 110 ---~~~~~~i~vwd~~~~~--~~~~~~--~~~~i~~l~~~~~~~-----~~~------~d~~i~iwd~~~--~~~~~~~~ 169 (415)
......|+.|.+-+.. -...+. ....-.....++++. .++ ....+++.+... ++. ..+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEee
Confidence 0123678889876542 233333 222223344455544 233 124567777543 332 2232
Q ss_pred ccCCCcceEEEecCCCceEEEEeCC---------ccCeEEEEEcCC--------cceEE-Ee-cCccceEEEEeCCCCCE
Q 014977 170 TLANLRGLCCLSHHSSTSVLACPGL---------QRGQVRIEHFGL--------NMIKL-IN-AHDSHIACFTLTLDGLL 230 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~g~---------~dg~v~i~~~~~--------~~~~~-~~-~~~~~i~~l~~sp~g~~ 230 (415)
.... ..+.. . .++.+++.+.. ..+.|...+... ...+. +. .....+..+.+..+ .+
T Consensus 288 ~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 288 MPSD-ATLQG-S--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp SCTT-CEEEE-E--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred cCCc-ceEee-e--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 2221 11111 1 13344443221 244455544332 12233 22 22446778888876 56
Q ss_pred EEEEeCCCc-EEEEEECCCCc-EEEE-EecCCCcccEEEEEeCCCCCEE-EEEeC---CCeEEEEEce
Q 014977 231 LATASTRGT-LIRIFNTVDGT-RLQE-VRRGVDRAEIYSIALSPNVQWL-AVASD---KGTVHIFSLR 291 (415)
Q Consensus 231 l~s~s~dg~-~I~vwd~~~~~-~~~~-~~~~~~~~~v~~l~~spdg~~l-~s~s~---dg~i~vwd~~ 291 (415)
+++...++. .|.++|+.+++ .... +... ..+.+..+.+++++..+ ++.+. -+.+..+|+.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 677766664 26777776664 2223 3221 12457677777776544 44333 3578888876
No 367
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.46 E-value=1.3e+02 Score=28.57 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=41.3
Q ss_pred ceEEEEeCCCC--CEEEEEeCCCcEEEEEECCCC----cEEEEEecCCCcccEE-EEEeCCCCCEEEEEeCCCeEE
Q 014977 218 HIACFTLTLDG--LLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIY-SIALSPNVQWLAVASDKGTVH 286 (415)
Q Consensus 218 ~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~-~l~~spdg~~l~s~s~dg~i~ 286 (415)
..++|+....+ ..+..|..+|..++| .+... ..+..+.......+|. .|.+++++.+|++++.++.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV-~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~k 475 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKI-RADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTR 475 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEE-EEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEE-EeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccce
Confidence 35555554433 357788899983343 34322 1233443322245775 899999999999998776444
No 368
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=28.48 E-value=4.3e+02 Score=25.86 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=45.0
Q ss_pred ceEEEEeC----CCCC---EEEEEeCCCcEEEEEECCCCc-EEEEEecCCCcccEEEEEeCCCC--CEEEEEeCCCeEEE
Q 014977 218 HIACFTLT----LDGL---LLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNV--QWLAVASDKGTVHI 287 (415)
Q Consensus 218 ~i~~l~~s----p~g~---~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg--~~l~s~s~dg~i~v 287 (415)
..++|+.. .+|+ .+..|..+|..+++....... .+..+..-....+|..|.++++. .+|++++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 34566652 4443 677899999855665554432 23333332234588899999988 89999988875554
No 369
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=24.63 E-value=4.7e+02 Score=25.02 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=43.3
Q ss_pred ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCcc---ceEEEEeCCCCCEEEEEeC--------------CC
Q 014977 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDS---HIACFTLTLDGLLLATAST--------------RG 238 (415)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~---~i~~l~~sp~g~~l~s~s~--------------dg 238 (415)
..+.+.-.+++.++...| ..+...+..++.+..+....+ .-..+...|+|++|+.+.. +.
T Consensus 208 ~l~~~~g~~nG~l~~g~G---~~i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD 284 (571)
T 3elq_A 208 YLMGIRETPRGTFTAVQG---QHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRD 284 (571)
T ss_dssp CCEEEEECTTSCEEEEEB---TEEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSC
T ss_pred eEEEEEecCCCCEEEecC---cEEEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceecc
Confidence 345566556665554322 235556777777666543221 1234566789998876532 23
Q ss_pred cEEEEEECCCCcEEEEEe
Q 014977 239 TLIRIFNTVDGTRLQEVR 256 (415)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~ 256 (415)
. |...| .+|+.+.++.
T Consensus 285 ~-I~EVD-~tGeVv~eW~ 300 (571)
T 3elq_A 285 H-ILEVD-KSGRVVDVWD 300 (571)
T ss_dssp E-EEEEC-TTSCEEEEEE
T ss_pred E-EEEEC-CCCCEEEEEE
Confidence 4 66667 6777766654
No 370
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=23.78 E-value=2e+02 Score=27.73 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=37.2
Q ss_pred EEEEEeCCCcEEEEEECCCC----c-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977 230 LLATASTRGTLIRIFNTVDG----T-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287 (415)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~----~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v 287 (415)
.+..|+.+|...++.....+ . .+.++.......+|..|.++++...|.+++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 56778889984455544333 1 2223332113457899999999999999888765443
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=20.34 E-value=3.9e+02 Score=22.51 Aligned_cols=181 Identities=9% Similarity=-0.048 Sum_probs=92.0
Q ss_pred ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-C
Q 014977 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-S 124 (415)
Q Consensus 46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-~ 124 (415)
.|..++...+..+++ .||.|..|-.....++-. .. .-...+..+.-..+..++++ + +.|..|-... +
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~-P~-~~~~~v~~ia~G~~hs~al~---~-----G~v~~wG~n~~g 131 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTV-PA-EARSGVDAIAAGAWASYALK---D-----GKVIAWGDDSDG 131 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCC-CG-GGSSSEEEEEEETTEEEEEE---T-----TEEEEEECCTTS
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCC-Cc-ccCCCeEEEECcCCEEEEEe---C-----CeEEEecCCCCC
Confidence 455555443333333 377777776654332211 00 11224566665556555555 3 8899997543 2
Q ss_pred CEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc
Q 014977 125 RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF 204 (415)
Q Consensus 125 ~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~ 204 (415)
+.-........|..++......+++.++.|+.|-......+.. ... ....+..++.-... .++. .+|.|+.|-.
T Consensus 132 qlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~h-s~al---~~G~v~~wG~ 205 (282)
T 3qhy_B 132 QTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTV-PAE-AQSGVDDVAGGIFH-SLAL---KDGKVIAWGD 205 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSC-CGG-GGSSEEEEEECSSE-EEEE---ETTEEEEEEC
T ss_pred cCCCCccCCCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCC-cee-cCCCeEEEEecCCE-EEEE---ECCeEEEEEC
Confidence 2211111345677777777776666899999998654222211 000 01234455544332 2332 4788888765
Q ss_pred CCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977 205 GLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (415)
Q Consensus 205 ~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (415)
... .+-.-......|..|+...+..+++ . ||. |+.|-...
T Consensus 206 n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~--~g~-v~~wG~n~ 246 (282)
T 3qhy_B 206 NRYKQTTVPTEALSGVSAIASGEWYSLAL-K--NGK-VIAWGSSR 246 (282)
T ss_dssp CTTSTTCCCGGGGSSCCEEEECSSCEEEE-E--TTE-EEEESTTC
T ss_pred CCCCCCCCCcccCCCceEEEcCCCEEEEE-E--CCE-EEEecCCC
Confidence 431 1100011123566776655443333 3 888 99996544
Done!