BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014978
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/384 (60%), Positives = 305/384 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE++PD+MRG C++LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML++YI
Sbjct: 149 EKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYI 208
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S GQ +KVP +++ELK TSPD+VTYNLWL A AS ND E AEK +L+ K+ K++PDW++
Sbjct: 209 SRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVT 268
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS LT+LY K + EKA LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+
Sbjct: 269 YSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVK 328
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++
Sbjct: 329 SSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVL 388
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
+ E FY R+V KGI P Y+TWE+LTW YLK+ MEKVL+CF KAI SV+KW + RL+
Sbjct: 389 LGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKG 448
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
A +LEEQG++ GAE L+ L+ AG+V+T++YNSLLRTYAKAG+M LI+ ERM KDNV++
Sbjct: 449 ACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVEL 508
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET++++++TS+M V+E+SS S
Sbjct: 509 DEETKELIRLTSQMRVTEISSTIS 532
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 217/389 (55%), Gaps = 7/389 (1%)
Query: 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82
A+A + A EN+F +LP+ + T +LL+ Y + + +AE L+ KM E +
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMS 160
Query: 83 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
YN ++ LY G+ +KVP M+QELK +N PD TYN+W+ A A+ ND E+ E+
Sbjct: 161 YNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMN 220
Query: 142 KT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200
+ ++ PDW +YS + S+Y+ L +KA L+E+E + +++ AY L++LY +G
Sbjct: 221 RDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
Query: 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
EV RIW+ + K ++ Y +I LVKL + AE ++ EW++ T D R+ N+L
Sbjct: 281 TEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVL 340
Query: 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---- 316
+ AY ++ A + +G K TWE+ Y+K G M + LEC KA+
Sbjct: 341 IGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGK 400
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGK 375
G KW+P + A + E++ D++GAE+LL L+N ++ EI+ L+RTYA AGK
Sbjct: 401 GDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGK 460
Query: 376 MPLIIVERMQKDNVQMDAETQKVLKITSE 404
+ R++ +NV+++ T+K+L S+
Sbjct: 461 SHPAMRRRLKMENVEVNEATKKLLDEVSQ 489
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 200/340 (58%), Gaps = 4/340 (1%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FF LP+ + +LL++YV+ K +AEAL+ M + G+ PLP+N M+ LY+
Sbjct: 156 EEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYM 215
Query: 92 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDW 149
+ + DKV M+ E+K K+ D+ +YN+WL++C S E E + ++K I P+W
Sbjct: 216 NLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNW 275
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++ST+ ++YIKM EKA L+++E R +NR+ Y LLSLY ++G K E+ R+W
Sbjct: 276 TTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHV 335
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
S+ + + Y ++SSLV++G+ E AE +Y+EW + + DPR+PN+L+ AY+ +Q
Sbjct: 336 YKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQ 395
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPDHR 327
LE AE ++ +V G KP +TWE+L G+ +K + + L C + A + W P
Sbjct: 396 LETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVL 455
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367
+++ + EE+ D+ E +L LR +G + + Y +L+
Sbjct: 456 MLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 4/343 (1%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 110
LL +YV+NK EAEALMEK++ GFL P P+N M+ LY ++GQ +KV ++ +K N
Sbjct: 149 LLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNK 208
Query: 111 SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168
P +V++YNLW+ AC + E + E+ K ++ W S TL ++YIK EKA
Sbjct: 209 IPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKA 268
Query: 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 228
L++ EK R NR+ Y L++LY ++G K+ V+R+W+ S+ +++ Y CV+SS
Sbjct: 269 RLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSS 328
Query: 229 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288
LVK G+ E+AE ++ EWE+ D RV N+LL AY+ ++ AES + ++ +G P
Sbjct: 329 LVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPN 388
Query: 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAE 346
Y TWE+L G++K MEK ++ + +R+ W P H ++ A E++ I+ A
Sbjct: 389 YKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEAT 448
Query: 347 HLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNV 389
+ L G S +Y LLR + A + I E M+ D +
Sbjct: 449 AYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 204/378 (53%), Gaps = 6/378 (1%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E +FENL ++ + T ALL+ YV+ + ++ EKM E GF+ L YN+++ LY
Sbjct: 113 EEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYT 172
Query: 92 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDW 149
+ GQ +KVP++L+E+K+ N +PD +Y + + A + D E ++ ++ I DW
Sbjct: 173 NIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDW 232
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y+ YI ++A LK E R +K+ Y+ L++LY +G K EVLR+W
Sbjct: 233 NTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDL 292
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
+ + + +Y V+ SLVK+ +AE + EW+S D RVPN ++ YI ++
Sbjct: 293 EKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSM 352
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRKWVPDH 326
E AE+ L +G +WEL+ Y +KG +E +C K A+G RKW P
Sbjct: 353 EEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGL 412
Query: 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-IIVERMQ 385
L+T+ + + ++G + E + +LRN V+ ++Y++L++ + G + +++RM+
Sbjct: 413 TLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMK 472
Query: 386 KDNVQMDAETQKVLKITS 403
D +++D ET +L S
Sbjct: 473 DDKIEIDEETTVILSTRS 490
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 195/362 (53%), Gaps = 15/362 (4%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE +P + R ALL+ Y K +AE + ++M E GFLK LPYN MLNLY+
Sbjct: 126 EKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYV 185
Query: 92 SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDW 149
G+ V ++L+E++ T PD+ T N L A + +D E EK + + + + DW
Sbjct: 186 RTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDW 245
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+Y+ + YIK L EKA L++ E+ +K + AY L+S Y G K+EV R+W
Sbjct: 246 RTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLW- 304
Query: 209 KMMSLFAKMN---DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 265
SL+ +++ + Y VIS+L+K+ + E+ E I +EWE+ D R+P++L+ Y
Sbjct: 305 ---SLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYC 361
Query: 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVP 324
+ +E AE N LV K +TWE L GY G+MEK +E +K+AI S W P
Sbjct: 362 KKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRP 421
Query: 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 384
++ + + LE Q D++G +L L GH+S Y+ LL AG + IV+ M
Sbjct: 422 HQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS---YDQLLYDMNGAG-LSWKIVDAM 477
Query: 385 QK 386
K
Sbjct: 478 GK 479
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 206/383 (53%), Gaps = 5/383 (1%)
Query: 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79
+A+++ L+ A E +F +L D ++ T +LL+ Y K+ +A+A E M + +
Sbjct: 117 IAKSKGLE--AAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSN 174
Query: 80 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 138
LP+N+++ +Y+ GQ +KVP ++ +K K+ +P +TY++W+ +C S D + EK
Sbjct: 175 SLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLD 234
Query: 139 ELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197
E+K + + W +++ L ++YIK+ L KA LK +E R Y L++LYT +
Sbjct: 235 EMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGI 294
Query: 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257
EV R+W + + +N++ Y ++ +L KL + + + ++ EWES T D R+
Sbjct: 295 ANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMA 354
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI- 316
N+ +++Y+ +N E AE+ +N + K +LL LK Q + L+ F+ A+
Sbjct: 355 NVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVL 414
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ W LI++ + EE D+DGAE TL +S+E Y L++TY AGK
Sbjct: 415 DQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKA 474
Query: 377 PLIIVERMQKDNVQMDAETQKVL 399
+ +R+++ + +D E + +L
Sbjct: 475 CPDMKKRLEEQGILVDEEQECLL 497
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 193/378 (51%), Gaps = 7/378 (1%)
Query: 30 ARENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 88
A EN+F NL P T AL++ Y + +A+A E M E F+ LP+N+M++
Sbjct: 156 AAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMS 215
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKID 146
+Y+ Q +KVP ++ +K + SP VTY++W+ +C S ND + EK E+ K ++
Sbjct: 216 MYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAK 275
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206
W ++S L ++Y K L EKA + LK ME++ NR ++ L+SLY + EV R+
Sbjct: 276 TTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRV 335
Query: 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266
W+ + ++N+ Y ++ ++ KLG+ + + I+ EWES D R+ NI + Y+
Sbjct: 336 WESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLK 395
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV----RKW 322
N E AE + + K P +LL L+ + + ++ + A+ +W
Sbjct: 396 GNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEW 455
Query: 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVE 382
L++ + E+ D+DGAE L N + +E L++TYA A K + E
Sbjct: 456 GWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRE 515
Query: 383 RMQKDNVQMDAETQKVLK 400
R+ + +++ E Q +LK
Sbjct: 516 RLSQQQIEVSEEIQDLLK 533
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 141/257 (54%), Gaps = 5/257 (1%)
Query: 30 ARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLN 88
A E +FE L + +T ++LLH+Y +K++ AEAL +++ E L + YN M+
Sbjct: 141 AAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMT 200
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKID 146
LY+S GQ++KVP++++ LK K SPD+ TYNLWL++CA+ + + K E++ +
Sbjct: 201 LYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSN 260
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLK-EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
W+ Y LTS+YI A +TL E EK ++ + Y L+ L+T +G K + +
Sbjct: 261 EGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQ 320
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAY 264
IWK + + ++ Y CV+SS + LG +AE I +W ES + D +L A+
Sbjct: 321 IWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASACLRILNAF 380
Query: 265 INRNQLEMAESFYNRLV 281
+ +A F+ LV
Sbjct: 381 RDVGLEGIASGFHLILV 397
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM----GYKDEVLRIWKKM 210
L S ++ LP+++ATT+ +EK N++ + L + + YK L + + M
Sbjct: 57 LKSRIFRLRLPKRSATTV--LEKWIGEGNQMTINELREISKELRRTRRYK-HALEVTEWM 113
Query: 211 MSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
+ +K++DA+Y I + K+ + AE ++ + S T + LL AY Q
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTS--LLHAYAASKQ 171
Query: 270 LEMAESFYNRLV-TKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 313
E AE+ + R++ + + T+ + Y+ GQ+EKV E +
Sbjct: 172 TERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIE 216
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 191/400 (47%), Gaps = 38/400 (9%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKCPLPYNHMLNLY 90
E FFE++P RG ++LL+SY ++ K+ +AEA +KM + G L P+PYN M++LY
Sbjct: 124 EKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLY 183
Query: 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPD 148
+ +KV ++L E+K N D VT N L ++ D EK + + I +
Sbjct: 184 SALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLE 243
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIW 207
W + + Y++ KA L+ E+ +K+ + AY L+ LY G ++EVLR+W
Sbjct: 244 WHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVW 303
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267
K S + ++ Y VI SL+K+ + AE IY WES+ D R+P +L + Y +R
Sbjct: 304 KLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDR 363
Query: 268 NQLEMAESFYN------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVL-------ECFKK 314
E AE N R + K + P L WG K K L + F K
Sbjct: 364 GMTEKAEKLMNSKTIKDRRMNKPVTPL-----LEQWGDQMKPSDLKCLIKNLRDSKQFSK 418
Query: 315 AIGSVRKWVPDHRLIT------AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE--IYNSL 366
A+ V +W+ + ++ AA L E ++ G E N + +Y +L
Sbjct: 419 AL-QVSEWMGEKQVCNLYLEDYAARLYLTE--NVLGLEEAEKYFENIPENMKDYSVYVAL 475
Query: 367 LRTYAKA----GKMPLIIVERMQKDNVQMDAET-QKVLKI 401
L +YAK+ G M I+ M+++NV D T VLK+
Sbjct: 476 LSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKV 515
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 174/361 (48%), Gaps = 8/361 (2%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 101
PD T S+LL+ Y +K+ ++A AL+++M E G+ + +++ L++ N + V
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL 210
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ Q +++ PD+VTY + + D + A +++K KI+ D + Y+T+ K
Sbjct: 211 VDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 270
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+ + A EM+ + R + YSSL+S N G + R+ M+ N
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
++ +I + VK G+ +AE +YDE S D + L+ + ++L+ A+ + ++
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341
+K P T+ L G+ K ++E+ +E F++ S R V + T + + D
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYTTLIHGFFQARD 448
Query: 342 IDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKV 398
D A+ + + + G H + YN LL K GK+ +++ E +Q+ ++ D T +
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508
Query: 399 L 399
+
Sbjct: 509 M 509
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 146/328 (44%), Gaps = 4/328 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 107
+ ++ + K +A L +M G Y+ +++ + G+ ++L ++ +
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE 321
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
+ +P+VVT++ + A + AEK + E+ K IDPD +YS+L + + + ++
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + M + C N V YS+L+ + +E + ++++M N YT +I
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ + + A+ ++ + S+ + NILL +L A + L ++P
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ ++ G K G++E E F S++ P+ + +G + A+
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNL--SLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 348 LLVTLRNAGHV-STEIYNSLLRTYAKAG 374
LL ++ G + ++ YN+L+R + G
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDG 587
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 100/287 (34%), Gaps = 37/287 (12%)
Query: 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156
D V +K P +V +N L+A A N E +++ I D +YS
Sbjct: 66 DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125
Query: 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----------------MGYK 200
+ + + A L +M K + V SSLL+ Y + MGYK
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185
Query: 201 DEVLRIWKKMMSLFAKMNDAE-------------------YTCVISSLVKLGEFEKAENI 241
+ + LF +E Y V++ L K G+ + A ++
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245
Query: 242 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301
+ E D + N ++ ++ A + + + KGI+P T+ L
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305
Query: 302 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348
G+ I RK P+ +A + ++G + AE L
Sbjct: 306 YGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEKL 350
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 5/247 (2%)
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ A F ++ K++ P + ++ L S KM E + ++M+ + YS
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
++ + L + KMM L + + + +++ A + D+ +
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
D L+ N+ A + +++V +G +P T+ + G K+G ++ L
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 311 CFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 368
KK G + V + I K + +D A +L + N G Y+SL+
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKH---MDDALNLFTEMDNKGIRPDVFTYSSLIS 301
Query: 369 TYAKAGK 375
G+
Sbjct: 302 CLCNYGR 308
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 168/351 (47%), Gaps = 8/351 (2%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 105
T S+LL+ Y K+ ++A AL+++M E G+ + + +++ L++ N + V + +
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+++ P++VTY + + + D + A +++ KI+ D + ++T+ K
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 276
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A KEME + R N V YSSL+S + G + ++ M+ N + +
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I + VK G+F +AE +YD+ S D N L+ + ++L+ A+ + +V+K
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
P T+ L G+ K ++E E F++ S R V D T L GD D A
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 346 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 392
+ + + + G V +I Y+ LL GK+ L + + MQK +++D
Sbjct: 455 QKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 125/285 (43%), Gaps = 3/285 (1%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F+ + K P+ T S+L+ + ++A L+ M E + +N +++ +
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+ G+ + ++ + +K++ PD+ TYN + + + A++ F + PD
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDV 400
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++Y+TL + K + E +EM R + V Y++L+ + G D +++K+
Sbjct: 401 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M+S + Y+ ++ L G+ EKA ++D + D + ++ +
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
++ + L KG+KP T+ + G K +++ KK
Sbjct: 521 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 7/245 (2%)
Query: 35 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
FE + K PD T + L+ + ++K+ + L +MS G + + Y ++
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 93 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
+G D ++ +++ PD++TY++ L + E A + F ++K++I D
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
Y+T+ K + + + + N V Y++++S + E + KKM
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNILLAAYINR 267
N Y +I + ++ G+ + + E S GD V N+L +++
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDK 627
Query: 268 NQLEM 272
+ L+M
Sbjct: 628 SFLDM 632
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 177/360 (49%), Gaps = 12/360 (3%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 105
T S+LL+ Y +K+ +EA AL+++M G+ + +N +++ L++ N + + + +
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+ K PD+VTY + + + D + A ++++ K++P + Y+T+ K +
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A KEME + R N V YSSL+S N G + R+ M+ + ++ +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTK 283
I + VK G+ +AE +YDE + + DP + L+ + ++L+ A+ + +V+K
Sbjct: 333 IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Query: 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 343
P T+ L G+ K ++E+ +E F++ S R V + L + GD D
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM--SQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 344 GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 399
A+ + + + G V I YN+LL K GK+ +++ E +Q+ ++ T ++
Sbjct: 449 MAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 163/382 (42%), Gaps = 13/382 (3%)
Query: 1 MERRRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMR------GPDTCSALLHS 54
++R G Q +Y V L R + NL +KM G + ++
Sbjct: 209 IDRMVAKGCQPDLVTYGVVV---NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPD 113
+ K +A L ++M G + Y+ +++ + G+ ++L ++ ++ +PD
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Query: 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173
V T++ + A + AEK + E+ K IDP ++YS+L + + + ++A +
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385
Query: 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233
M + C + V Y++L+ + +E + ++++M N Y +I L + G
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Query: 234 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 293
+ + A+ I+ E S + N LL +LE A + L ++P T+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 505
Query: 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353
++ G K G++E + F S++ PD + +G + A+ L ++
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 354 NAGHV-STEIYNSLLRTYAKAG 374
G + ++ YN+L+R + G
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDG 585
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 120/305 (39%), Gaps = 77/305 (25%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PD T SAL+ ++V+ K EAE L ++M + + Y+ ++N + + +LD+ QM
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 103 LQEL-KKNTSPDVVTYN-----------------------------------LWLAACAS 126
+ + K+ PDVVTYN + +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-------- 178
D + A++ F E+ + P+ ++Y+TL K EKA + +++
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503
Query: 179 -------TCRKNR--------------------VAYSSLLSLYTNMGYKDEVLRIWKKMM 211
C+ + VAY++++S + G K+E ++K+M
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNILLAAYINR 267
N Y +I + ++ G+ E + + E S GD V N+L +++
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDK 623
Query: 268 NQLEM 272
+ L+M
Sbjct: 624 SFLDM 628
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 1/225 (0%)
Query: 91 ISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+S +LD + E+ K+ P ++ ++ L+A A N + +++ I +
Sbjct: 57 LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+YS L + + + A L +M K N V SSLL+ Y + E + + +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M + N + +I L + +A + D + D +++ R
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
++A + N++ ++P + + G K M+ L FK+
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 168/351 (47%), Gaps = 8/351 (2%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 105
T S+LL+ Y K+ ++A AL+++M E G+ + + +++ L++ N + V + +
Sbjct: 82 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 141
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+++ P++VTY + + + D + A +++ KI+ D + ++T+ K
Sbjct: 142 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 201
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A KEME + R N V YSSL+S + G + ++ M+ N + +
Sbjct: 202 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 261
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I + VK G+F +AE ++D+ S D N L+ + ++L+ A+ + +V+K
Sbjct: 262 IDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 321
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
P T+ L G+ K ++E E F++ S R V D T L GD D A
Sbjct: 322 FPDLDTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 346 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 392
+ + + + G V +I Y+ LL GK+ L + + MQK +++D
Sbjct: 380 QKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 124/285 (43%), Gaps = 3/285 (1%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F+ + K P+ T S+L+ + ++A L+ M E + +N +++ +
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+ G+ + ++ + +K++ PD+ TYN + + + A++ F + PD
Sbjct: 266 VKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDL 325
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y+TL + K + E +EM R + V Y++L+ + G D +++K+
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 385
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M+S + Y+ ++ L G+ EKA ++D + D + ++ +
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
++ + L KG+KP T+ + G K +++ KK
Sbjct: 446 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 131/329 (39%), Gaps = 6/329 (1%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 109
LL + + KK +L EKM G YN ++N + Q+ +L ++ K
Sbjct: 16 LLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLG 75
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
P +VT + L A ++ + PD I+++TL +A
Sbjct: 76 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
+ M +R C+ N V Y +++ G D + KM + + + + +I SL
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 195
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
K + A N++ E E+ + + L++ + + A + ++ K I P
Sbjct: 196 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 255
Query: 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHL 348
T+ L ++K+G K +E K +++ + PD + N +D A+ +
Sbjct: 256 VTFNALIDAFVKEG---KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 349 L-VTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ + YN+L++ + K+ ++
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRV 341
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 5/232 (2%)
Query: 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 105
DT + L+ + ++K+ + L +MS G + + Y ++ +G D ++ ++
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 385
Query: 106 L-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164
+ PD++TY++ L + E A + F ++K++I D Y+T+ K
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445
Query: 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224
+ + + + N V Y++++S + E + KKM + Y
Sbjct: 446 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNT 505
Query: 225 VISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNILLAAYINRNQLEM 272
+I + ++ G+ + + E S GD V N+L ++++ L+M
Sbjct: 506 LIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDM 557
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 39 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98
PD M T S LL N K +A + + M + Y M+ G++D
Sbjct: 393 PDIM----TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Query: 99 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID---PDWISYST 154
+ L K P+VVTYN ++ S K ++A+ LKK K D PD +Y+T
Sbjct: 449 GWDLFCSLSLKGVKPNVVTYNTMISGLCS---KRLLQEAYALLKKMKEDGPLPDSGTYNT 505
Query: 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212
L +++ +A ++EM R+CR V +S + L NM + + + + M+S
Sbjct: 506 LIRAHLRDGDKAASAELIREM--RSCR--FVGDASTIGLVANMLHDGRLDKSFLDMLS 559
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
++ LLS M D V+ + +KM L N Y +I+ + + A + +
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306
+ + LL Y + ++ A + +++V G +P T+ L G +
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 365
+ + + + R P+ N L ++GDID A +LL + A I+N+
Sbjct: 133 EAVALVDRMVQ--RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 190
Query: 366 LLRTYAK 372
++ + K
Sbjct: 191 IIDSLCK 197
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 42/79 (53%)
Query: 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 280
E+ ++S++ K+ +F+ ++ ++ + + + + NIL+ + R+Q+ +A + ++
Sbjct: 12 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 71
Query: 281 VTKGIKPCYTTWELLTWGY 299
+ G +P T L GY
Sbjct: 72 MKLGYEPSIVTLSSLLNGY 90
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 164/363 (45%), Gaps = 13/363 (3%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY- 90
E + +P +G LL + V ++E + KM + GF + ML L+
Sbjct: 216 EACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHK 275
Query: 91 -ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
I ++ V +++ K+N P ++TY + + + ND E+ +K ++ D+
Sbjct: 276 RIDRKKIADVLLLME--KENIKPSLLTYKILIDVKGATNDISGMEQILETMKDEGVELDF 333
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+ + Y L +KA LKEME + NR A+ LLS+Y ++G +DEV RIWK
Sbjct: 334 QTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGREDEVKRIWKI 393
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
S K E I + KL + ++AE I+++ + ++LL Y++
Sbjct: 394 CES---KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKM 450
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHR 327
L + R+ G + TTW+ L Y++ G++EK KA + +
Sbjct: 451 LSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFM 510
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLIIVERMQK 386
I Y+K +GD+ E + + +R AG+ S + +L++ Y A + +R++
Sbjct: 511 YIMDEYSK---RGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKA 567
Query: 387 DNV 389
DN+
Sbjct: 568 DNI 570
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 170/357 (47%), Gaps = 6/357 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 105
T S+LL+ Y K+ ++A AL+++M E G+ + + +++ L++ N + V + +
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+++ P++VTY + + + D + A +++ KI+ + + YST+ K
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A EME + R N + YSSL+S N + R+ M+ N + +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I + VK G+ +AE +YDE S D + L+ + ++L+ A+ + +++K
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
P T+ L G+ K ++++ +E F++ S R V + T + + D D A
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREM--SQRGLVGNTVTYTTLIHGFFQARDCDNA 454
Query: 346 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 399
+ + + + G H + YN+LL K GK+ +++ E +Q+ ++ T ++
Sbjct: 455 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 129/285 (45%), Gaps = 3/285 (1%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F + +K P+ T S+L+ ++ ++A L+ M E + +N +++ +
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+ G+L + ++ E +K++ PD+ TY+ + + + A+ F + P+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++Y+TL + + K + ++ +EM +R N V Y++L+ + D ++K+
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M+S N Y ++ L K G+ EKA +++ + NI++ +
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
+E + L KG+KP + + G+ +KG E+ F+K
Sbjct: 521 VEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRK 565
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 4/328 (1%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 109
LL + + KK +L EKM G YN ++N + Q+ +L ++ K
Sbjct: 91 LLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLG 150
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
P +VT + L A ++ + PD I+++TL +A
Sbjct: 151 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
+ M +R C+ N V Y +++ G D + KM + + N Y+ VI SL
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSL 270
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
K + A N++ E E+ + + L++ N + A + ++ + I P
Sbjct: 271 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNV 330
Query: 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349
T+ L ++K+G++ + + + + I R PD ++ N +D A+H+
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHMF 388
Query: 350 -VTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ + + YN+L+ + KA ++
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRI 416
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 36/138 (26%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+H + Q + A+ + ++M G + YN +L+ NG+L+K + + L
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Query: 107 K------------------------------------KNTSPDVVTYNLWLAACASQNDK 130
+ K PDV+ YN ++ + K
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 131 ETAEKAFLELKKTKIDPD 148
E A+ F ++++ PD
Sbjct: 557 EEADALFRKMREDGPLPD 574
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 3/187 (1%)
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
++ LLS M D V+ + +KM L N Y +I+ + + A + +
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306
+ + LL Y + ++ A + +++V G +P T+ L G +
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207
Query: 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 365
+ + + + R P+ N L ++GDID A +LL + A + IY++
Sbjct: 208 EAVALVDRMVQ--RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST 265
Query: 366 LLRTYAK 372
++ + K
Sbjct: 266 VIDSLCK 272
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 42/79 (53%)
Query: 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 280
E+ ++S++ K+ +F+ ++ ++ + + + + NIL+ + R+Q+ +A + ++
Sbjct: 87 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 146
Query: 281 VTKGIKPCYTTWELLTWGY 299
+ G +P T L GY
Sbjct: 147 MKLGYEPSIVTLSSLLNGY 165
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 171/363 (47%), Gaps = 12/363 (3%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 101
PD T ++LL+ + + ++A AL+++M E G+ + + +++ L++ N + V
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVAL 205
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ + +++ PD+VTY + + D + A +++ KI+ + + YST+ K
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+ A EME + R N + YSSL+S N G + R+ M+ N
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVT 325
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNR 279
++ +I + VK G+ KAE +Y+E I + DP + L+ + ++L A+
Sbjct: 326 FSALIDAFVKKGKLVKAEKLYEEM--IKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLEL 383
Query: 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339
++ K P T+ L G+ K +++K +E F++ S R V + T + +
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM--SQRGLVGNTVTYTTLIHGFFQA 441
Query: 340 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 396
D D A+ + + + G H + YN LL K GK+ +++ E +Q+ ++ D T
Sbjct: 442 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 501
Query: 397 KVL 399
++
Sbjct: 502 NIM 504
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 136/311 (43%), Gaps = 10/311 (3%)
Query: 1 MERRRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDT------CSALLHS 54
++R G Q +Y A L R + NL +KM S ++ S
Sbjct: 206 IDRMVQRGCQPDLVTYG---AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262
Query: 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPD 113
+ + +A L +M G + Y+ +++ + G+ ++L + +++ +P+
Sbjct: 263 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPN 322
Query: 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173
+VT++ + A + AEK + E+ K IDP+ +YS+L + + ++ +A L+
Sbjct: 323 LVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE 382
Query: 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233
M ++ C N V Y++L++ + D+ + ++++M N YT +I +
Sbjct: 383 LMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442
Query: 234 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 293
+ + A+ ++ + S+ + NILL +L A + L ++P T+
Sbjct: 443 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 502
Query: 294 LLTWGYLKKGQ 304
++ G K G+
Sbjct: 503 IMIEGMCKAGK 513
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 139/330 (42%), Gaps = 4/330 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 108
S LL + + K + EKM G YN ++N + +L +L ++ K
Sbjct: 82 SKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMK 141
Query: 109 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
PD+VT N L N A ++ + PD ++++TL +
Sbjct: 142 LGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASE 201
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + M +R C+ + V Y ++++ G D L + KM + + N Y+ VI
Sbjct: 202 AVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVID 261
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
SL K + A N++ E E+ + + L++ N + A + ++ + I P
Sbjct: 262 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAE 346
T+ L ++KKG++ K + +++ I S+ + + + + L+ G+
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQML 381
Query: 347 HLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376
L++ +V T YN+L+ + KA ++
Sbjct: 382 ELMIRKDCLPNVVT--YNTLINGFCKAKRV 409
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F + +K P+ T S+L+ + ++A L+ M E + ++ +++ +
Sbjct: 274 NLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAF 333
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYN-LWLAACASQNDKETAEKAFLELKKTKIDPD 148
+ G+L K ++ +E +K++ P++ TY+ L C E + L ++K + P+
Sbjct: 334 VKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL-PN 392
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
++Y+TL + + K + +K +EM +R N V Y++L+ + D ++K
Sbjct: 393 VVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 452
Query: 209 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268
+M+S+ N Y ++ L K G+ KA +++ + + D NI++
Sbjct: 453 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512
Query: 269 QLEMAESFY 277
+ +M ++
Sbjct: 513 KWKMGGIYF 521
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 3/189 (1%)
Query: 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 244
+ +S LLS M D V+ +KM L N Y +I+ + A + +
Sbjct: 79 IEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGK 138
Query: 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 304
+ D N LL + + N++ A + +++V G KP T+ L G +
Sbjct: 139 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198
Query: 305 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIY 363
+ + + + R PD A N L ++GD D A +LL + A + IY
Sbjct: 199 ASEAVALIDRMVQ--RGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 364 NSLLRTYAK 372
++++ + K
Sbjct: 257 STVIDSLCK 265
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%)
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ A F + +++ P I +S L S KM + + ++ME N Y+ L
Sbjct: 60 DDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNIL 119
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
++ + L + KMM L + + +++ A + D+ +
Sbjct: 120 INCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGY 179
Query: 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
D L+ N+ A + +R+V +G +P T+ + G K+G + L
Sbjct: 180 KPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239
Query: 311 CFKK 314
K
Sbjct: 240 LLNK 243
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 169/364 (46%), Gaps = 12/364 (3%)
Query: 44 GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVP 100
GP T ++LL+ + + +EA AL+++M E G+ + + +++ L+ N + V
Sbjct: 132 GPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVA 191
Query: 101 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160
+ + + K PD+VTY + + + + A +++K KI+ D + YST+
Sbjct: 192 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLC 251
Query: 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 220
K + A EM+ + R + YSSL+S N G + R+ M+ N
Sbjct: 252 KYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVV 311
Query: 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 278
+ +I + K G+ +AE ++DE I + DP + N L+ + ++L+ A+ +
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEM--IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369
Query: 279 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338
+V+K P T+ L G+ K ++ +E F+ S R V + T + +
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM--SRRGLVGNTVTYTTLIHGFFQ 427
Query: 339 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 395
D D A+ + + + G H + YN+LL K GK+ +++ E +QK ++ D T
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT 487
Query: 396 QKVL 399
++
Sbjct: 488 YNIM 491
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F + +K PD T S+L+ + ++A L+ M E + +N +++ +
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
G+L + ++ E ++++ P++VTYN + + + A++ F + PD
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDV 380
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++Y+TL + + K + ++M +R N V Y++L+ + D ++K+
Sbjct: 381 VTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ 440
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M+S N Y ++ L K G+ EKA +++ + D NI+ +
Sbjct: 441 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
+E + L KG+KP + + G+ KKG E+ F K
Sbjct: 501 VEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 148/369 (40%), Gaps = 8/369 (2%)
Query: 14 QSYRQRVAQAQALQTRARE--NFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALME 69
YR+++++ L + E + F + P S LL + + KK + E
Sbjct: 30 DGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGE 89
Query: 70 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQN 128
KM G YN M+N QL +L ++ K P +VT N L N
Sbjct: 90 KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 149
Query: 129 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 188
A ++ + PD ++++TL + +A ++ M + C+ + V Y
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248
++++ G D L + KM + + Y+ VI SL K + A N++ E ++
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 308
D + L++ N + A + ++ + I P T+ L + K+G++ +
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEA 329
Query: 309 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 367
+ F + I R P+ + N +D A+ + + + + + YN+L+
Sbjct: 330 EKLFDEMIQ--RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 368 RTYAKAGKM 376
+ KA K+
Sbjct: 388 NGFCKAKKV 396
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 111/261 (42%), Gaps = 11/261 (4%)
Query: 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 76
R+ +AQ + T + LPD + T + L++ + + KK + L MS G
Sbjct: 358 HDRLDEAQQIFTLMVSK--DCLPDVV----TYNTLINGFCKAKKVVDGMELFRDMSRRGL 411
Query: 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 135
+ + Y +++ + D + +++ P+++TYN L E A
Sbjct: 412 VGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 471
Query: 136 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195
F L+K+K++PD +Y+ ++ K E + + + + +AY++++S +
Sbjct: 472 VFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFC 531
Query: 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 255
G K+E ++ KM + Y +I + ++ G+ + + E S GD
Sbjct: 532 KKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDAS 591
Query: 256 ----VPNILLAAYINRNQLEM 272
V ++L +++ LE+
Sbjct: 592 TYGLVTDMLHDGRLDKGFLEV 612
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 168/355 (47%), Gaps = 10/355 (2%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 101
PD T S+LL+ Y +K+ ++A AL+++M E G+ + +++ L++ N + V
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL 210
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ Q +++ PD+VTY + + D + A +++ +I + + ++T+ K
Sbjct: 211 VDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCK 270
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
E A EME + R N V Y+SL++ N G + R+ M+ N
Sbjct: 271 YRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVT 330
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
+ +I + K G+ +AE +++E S D N+L+ + N+L+ A+ + +V
Sbjct: 331 FNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMV 390
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341
+K P T+ L G+ K ++E +E F++ S R V + T + GD
Sbjct: 391 SKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM--SQRGLVGNTVTYTTIIQGFFQAGD 448
Query: 342 IDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 392
D A+ + + + V T+I Y+ LL GK+ L+I + +QK ++++
Sbjct: 449 CDSAQMVFKQMV-SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELN 502
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 23/330 (6%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
+ ++ S + + A L +M G + YN ++N + G+ ++L L+
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLE 321
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
K +P+VVT+N + A + AEK E+ + IDPD I+Y+ L + + ++
Sbjct: 322 KKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDE 381
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A K M + C N Y++L++ + ++ + ++++M N YT +I
Sbjct: 382 AKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQ 441
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ G+ + A+ ++ + S D +ILL + +L+ A + L ++
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL 501
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNK--LEEQGDI-- 342
+ + G K G++ + + F S++ V + +I+ +K L+E D+
Sbjct: 502 NIFIYNTMIEGMCKAGKVGEAWDLFCSL--SIKPDVVTYNTMISGLCSKRLLQEADDLFR 559
Query: 343 ----DGAEHLLVTLRNAGHVSTEIYNSLLR 368
DG TL N+G YN+L+R
Sbjct: 560 KMKEDG------TLPNSG-----TYNTLIR 578
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 35/234 (14%)
Query: 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156
D V +K P +V +N L+A A N E +++ I D +YS
Sbjct: 66 DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125
Query: 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----------------MGYK 200
+ + + A L +M K + V SSLL+ Y + MGYK
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185
Query: 201 DEVLRIWKKMMSLFAKMNDAE-------------------YTCVISSLVKLGEFEKAENI 241
+ + LF +E Y V++ L K G+ + A N+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL 245
Query: 242 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 295
++ E+ + + N ++ + +E+A + + TKGI+P T+ L
Sbjct: 246 LNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/184 (17%), Positives = 71/184 (38%)
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ A F ++ K++ P + ++ L S KM E + ++M+ + YS
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
++ + L + KMM L + + + +++ A + D+ +
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
D L+ N+ A + +++V +G +P T+ + G K+G ++ L
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 311 CFKK 314
K
Sbjct: 245 LLNK 248
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 14/347 (4%)
Query: 68 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACAS 126
M+KM E G+ L YN ++ + G+ + + L +K + +P V TY++ + A+
Sbjct: 189 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 248
Query: 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186
+++ + KAF +KK ++P+ +SY L + L A +E+EK N
Sbjct: 249 EHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWST 308
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
L+ LY +G + E+ R W ++ F + Y + ++G ++AE ++ E +
Sbjct: 309 LDILMILYGRLGKEKELARTW-NVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMK 367
Query: 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306
++ G + N LL+ Y +E A + + G KP T+ L G K M+
Sbjct: 368 NVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMK 427
Query: 307 KVLECFK--------KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358
+ L+ + K+IGS W+ I + E+GD++ +E L ++NA +
Sbjct: 428 EALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECF---AEKGDVENSEKLFEEVKNAKYN 484
Query: 359 STE-IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 404
+YN+L + Y KA + +RM + DAE+ +LK+ +
Sbjct: 485 RYAFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQ 531
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 170/362 (46%), Gaps = 10/362 (2%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 101
PD T S+LL+ Y K+ +EA AL+++M + + +N +++ L++ N + V
Sbjct: 148 PDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL 207
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ + + + PD+ TY + + D + A +++K KI+ D + Y+T+
Sbjct: 208 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN 267
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+ A EM+ + R N V Y+SL+ N G + R+ M+ N
Sbjct: 268 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
++ +I + VK G+ +AE +YDE S D + L+ + ++L+ A+ + ++
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341
+K P T+ L G+ K ++E+ +E F++ S R V + L + GD
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 342 IDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQK 397
D A+ + + + G V +I Y+ LL K GK+ L++ E +QK ++ D T
Sbjct: 446 CDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504
Query: 398 VL 399
++
Sbjct: 505 IM 506
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 147/332 (44%), Gaps = 9/332 (2%)
Query: 33 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
N F + +K P+ T ++L+ + ++A L+ M E + ++ +++ +
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335
Query: 91 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+ G+L + ++ E +K++ PD+ TY+ + + + A+ F + P+
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 395
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++Y+TL + K + E+ +EM +R N V Y++L+ G D +I+KK
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M+S + Y+ ++ L K G+ EKA +++ + D NI++ +
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHR 327
+E + L KG+KP + + G+ +KG E+ F+ K G++ +
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNT 575
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359
LI A GD + L+ +R+ G V
Sbjct: 576 LIRARL----RDGDKAASAELIKEMRSCGFVG 603
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 42/296 (14%)
Query: 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140
L N +L+L + + +D +M+Q P +V +N L+A A N + +
Sbjct: 51 LSRNVLLDLKLDDA-VDLFGEMVQS---RPLPSIVEFNKLLSAIAKMNKFDLVISLGERM 106
Query: 141 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200
+ +I D SY+ L + + + A L +M K + V SSLL+ Y +
Sbjct: 107 QNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRI 166
Query: 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
E + + +M + + N + N L
Sbjct: 167 SEAVALVDQMFVMEYQPNTVTF-----------------------------------NTL 191
Query: 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 320
+ N+ A + +R+V +G +P T+ + G K+G ++ L KK
Sbjct: 192 IHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM--EKG 249
Query: 321 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 375
K D + T + L +++ A +L + N G + YNSL+R G+
Sbjct: 250 KIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 305
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 11/362 (3%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E + + +P+ RG LL ++V AEA+ KM + GF N ML LY
Sbjct: 214 EAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYK 273
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
+ +L K+N P++ TY + + S ND E+ +K ++ D +
Sbjct: 274 RVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEGVELDLRA 333
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
+ + Y L EKA LKEME + +NR LLS+Y + +DEV R+WK
Sbjct: 334 RALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQREDEVRRVWKIC- 392
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEK---AENIYDEWESISGTGDPRVPNILLAAYINRN 268
+ Y V+++++ G+ +K AE ++++ +S V ++LL Y++
Sbjct: 393 -----EENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHK 447
Query: 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328
+ + ++ G TW+ + Y++ G++EK KAI S ++ P
Sbjct: 448 MVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQS-KQIKPLMSS 506
Query: 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKMPLIIVERMQKD 387
++ +GD+ E + ++ AG+ S Y +L++ Y A + ERM+ D
Sbjct: 507 FMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKAD 566
Query: 388 NV 389
N+
Sbjct: 567 NI 568
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 17/364 (4%)
Query: 26 LQTRARENFF--ENLPDKMR---------GPDTCS--ALLHSYVQNKKSAEAEALMEKMS 72
L T+ + FF N+P +R PD + AL++ + + + +A ++++M
Sbjct: 126 LCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMR 185
Query: 73 ECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKE 131
F + YN M+ S G+LD ++L Q L N P V+TY + + A + +
Sbjct: 186 SKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVD 245
Query: 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191
A K E+ + PD +Y+T+ K + ++A ++ +E + C + ++Y+ LL
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251
N G +E ++ KM S N Y+ +I++L + G+ E+A N+ + T
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365
Query: 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311
D + L+AA+ +L++A F +++ G P + + K G+ ++ LE
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425
Query: 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 370
F K +G V P+ ++ L GD A H+++ + + G EI YNS++
Sbjct: 426 FGK-LGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483
Query: 371 AKAG 374
+ G
Sbjct: 484 CREG 487
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 140/329 (42%), Gaps = 9/329 (2%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 110
+ H ++ E+ L+E M G+ + ++ + + + K ++++ L+K
Sbjct: 95 IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154
Query: 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170
PDV YN + N + A + ++ PD ++Y+ + + A
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230
L ++ C+ + Y+ L+ G DE L++ +M+S K + Y +I +
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 231 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290
K G ++A + E D NILL A +N+ + E E ++ ++ P
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEH 347
T+ +L + G++E+ + K + + PD + + AA+ + +G +D A
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLK--LMKEKGLTPDAYSYDPLIAAFCR---EGRLDVAIE 389
Query: 348 LLVTLRNAGHVSTEI-YNSLLRTYAKAGK 375
L T+ + G + + YN++L T K GK
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGK 418
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 115/249 (46%), Gaps = 1/249 (0%)
Query: 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 121
EA LM++M G YN ++ G +D+ +M++ L+ K PDV++YN+ L
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 122 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181
A +Q E EK ++ K DP+ ++YS L + + E+A LK M+++
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365
Query: 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 241
+ +Y L++ + G D + + M+S + Y V+++L K G+ ++A I
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425
Query: 242 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301
+ + + + + N + +A + A +++ GI P T+ + +
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485
Query: 302 KGQMEKVLE 310
+G +++ E
Sbjct: 486 EGMVDEAFE 494
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 12/294 (4%)
Query: 24 QALQTRARENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP 80
+ + RA E NL K PD S LL + + K E E LM KM SE KC
Sbjct: 276 EGMVDRAFE-MVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE----KCD 330
Query: 81 ---LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKA 136
+ Y+ ++ +G++++ +L+ +K K +PD +Y+ +AA + + A +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196
+ PD ++Y+T+ + K ++A ++ + C N +Y+++ S +
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256
G K L + +MMS ++ Y +IS L + G ++A + + S
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
NI+L + +++E A + +V G +P TT+ +L G G + +E
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 104/239 (43%), Gaps = 1/239 (0%)
Query: 81 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 139
+ YN +L ++ G+ ++ +++ ++ + P+VVTY++ + E A
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+K+ + PD SY L + + + + A L+ M C + V Y+++L+ G
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
D+ L I+ K+ + N + Y + S+L G+ +A ++ E S D N
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318
+++ ++ A + + P T+ ++ G+ K ++E + + +G+
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 3/185 (1%)
Query: 34 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
F E + PD + +L + +N K+ +A + K+ E G YN M +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 92 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150
S+G + M+ E+ N PD +TYN ++ + + A + ++++ + P +
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
+Y+ + + K E A L+ M CR N Y+ L+ GY+ E + + +
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
Query: 211 MSLFA 215
+ + A
Sbjct: 570 VRIDA 574
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 7/332 (2%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 107
SAL+ +Y ++ EA ++ M E G + YN +++ G + +V + E++
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331
Query: 108 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166
+N PD +T+N LA C+ E A F E+ +I+ D SY+TL K +
Sbjct: 332 RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMD 391
Query: 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226
A L +M + N V+YS+++ + G DE L ++ +M L ++ Y ++
Sbjct: 392 LAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLL 451
Query: 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286
S K+G E+A +I E S+ D N LL Y + + + + + + + +
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511
Query: 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346
P T+ L GY K G ++ +E F++ + + D L +A + L + G + A
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLR--ADVVLYSALIDALCKNGLVGSAV 569
Query: 347 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 376
L+ + G +S + YNS++ + ++ M
Sbjct: 570 SLIDEMTKEG-ISPNVVTYNSIIDAFGRSATM 600
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 128/277 (46%), Gaps = 3/277 (1%)
Query: 34 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
FF+ + PD T ++LL + A L ++M+ + YN +L+
Sbjct: 326 FFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385
Query: 92 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150
GQ+D ++L ++ K P+VV+Y+ + A + A F E++ I D +
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
SY+TL S+Y K+ E+A L+EM +K+ V Y++LL Y G DEV +++ +M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270
N Y+ +I K G +++A I+ E++S D + + L+ A +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307
A S + + +GI P T+ + + + M++
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 1/193 (0%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 108
S ++ + + + EA L +M G + YN +L++Y G+ ++ +L+E+
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMAS 472
Query: 109 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
DVVTYN L Q + +K F E+K+ + P+ ++YSTL Y K L ++
Sbjct: 473 VGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKE 532
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A +E + R + V YS+L+ G + + +M N Y +I
Sbjct: 533 AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 228 SLVKLGEFEKAEN 240
+ + +++ +
Sbjct: 593 AFGRSATMDRSAD 605
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 32/225 (14%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +ALL Y + K E + + +M L L Y+ +++ Y G + ++ +E
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 540
Query: 107 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK---- 161
K DVV Y+ + A +A E+ K I P+ ++Y+++ + +
Sbjct: 541 KSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATM 600
Query: 162 -----------MELPEKAATTLKEMEKRTCRKNRVA--YSSLLSLYTNMGYKD------- 201
+ A + L E E NRV + L + N KD
Sbjct: 601 DRSADYSNGGSLPFSSSALSALTETE-----GNRVIQLFGQLTTESNNRTTKDCEEGMQE 655
Query: 202 --EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 244
+L +++KM L K N ++ ++++ + FE A + +E
Sbjct: 656 LSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEE 700
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 151/332 (45%), Gaps = 11/332 (3%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELK 107
++L+ ++ + + EA + +KM E G + YN +LN++ G +K+ +++++K
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271
Query: 108 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166
+ +PD TYN + C + + A + F E+K D ++Y+ L +Y K P+
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226
+A L EM + V Y+SL+S Y G DE + + +M K + YT ++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286
S + G+ E A +I++E + + N + Y NR + ++ + G+
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 287 PCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344
P TW L + + G +V FK K G +VP+ + G +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG----FVPERETFNTLISAYSRCGSFEQ 507
Query: 345 AEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 374
A + + +AG V+ ++ YN++L A+ G
Sbjct: 508 AMTVYRRMLDAG-VTPDLSTYNTVLAALARGG 538
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 32 ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E F L ++ PD T ++++ Y + + A+A +++ M E GF YN ++ +
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYM 673
Query: 90 YISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148
+ + K ++L+E L K PD+++YN + A A + F E++ + I PD
Sbjct: 674 HSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 202
I+Y+T Y + E+A ++ M K CR N+ Y+S++ Y + KDE
Sbjct: 734 VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDE 787
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 123/277 (44%), Gaps = 36/277 (12%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +ALL Y ++ + EA ++ +M GF + YN +++ Y +G LD+ ++ ++
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK--------------------- 144
+K T PDV TY L+ E+A F E++
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKF 435
Query: 145 --------------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ PD ++++TL +++ + + + + KEM++ R +++L
Sbjct: 436 TEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL 495
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
+S Y+ G ++ + ++++M+ + + Y V+++L + G +E++E + E E
Sbjct: 496 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 555
Query: 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ LL AY N ++ + S + + I+P
Sbjct: 556 KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEP 592
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191
+A F L++ D SY++L S + +A K+ME+ C+ + Y+ +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250
Query: 192 SLYTNMGYKDEVLRIWKKMMSLFAKMN------DA-EYTCVISSLVKLGEFEKAENIYDE 244
+++ MG W K+ SL KM DA Y +I+ + ++A +++E
Sbjct: 251 NVFGKMGTP------WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304
Query: 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 304
++ + D N LL Y ++ + A N +V G P T+ L Y + G
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364
Query: 305 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HVSTE 361
+++ +E + K PD T + E G ++ A + +RNAG ++ T
Sbjct: 365 LDEAMELKNQMAEKGTK--PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICT- 421
Query: 362 IYNSLLRTYAKAGKM 376
+N+ ++ Y GK
Sbjct: 422 -FNAFIKMYGNRGKF 435
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 7/225 (3%)
Query: 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLE 139
L Y +L+ Y + ++ + + +E+ P V + C+ + AE+AF E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT---N 196
LK+ PD + +++ S+Y + ++ KA L M++R + Y+SL+ +++ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679
Query: 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256
G +E+LR ++++ K + Y VI + + A I+ E + D
Sbjct: 680 FGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVIT 736
Query: 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301
N + +Y + E A ++ G +P T+ + GY K
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 62/342 (18%)
Query: 33 NFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
+ FE + + P+ C+ A + Y K E + ++++ CG + +N +L ++
Sbjct: 405 SIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVF 464
Query: 91 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
NG +V + +E+K+ P+ T+N ++A + E A + + + PD
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y+T+ + + + E++ L EME C+ N + Y SLL Y N K
Sbjct: 525 STYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN-----------GK 573
Query: 210 MMSLFAKMNDAEYTCVIS-------SLV----KLGEFEKAENIYDEWESISGTGDPRVPN 258
+ L + + Y+ VI +LV K +AE + E + + D N
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633
Query: 259 ILLAAYINRNQLEMAESF---------------YNRL--------------------VTK 283
+++ Y R + A YN L + K
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 325
GIKP ++ + + Y + +M F + S VPD
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNS--GIVPD 733
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 5/196 (2%)
Query: 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 121
EAE ++ E GF N M+++Y + K +L +K + +P + TYN +
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671
Query: 122 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181
+ D +E+ E+ I PD ISY+T+ Y + A+ EM
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIV 731
Query: 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 241
+ + Y++ + Y +E + + + M+ + N Y ++ KL ++A+
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLF 791
Query: 242 YDEWESISGTGDPRVP 257
++ ++ DP P
Sbjct: 792 VEDLRNL----DPHAP 803
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 167/361 (46%), Gaps = 8/361 (2%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 101
PD T ++LL+ + + ++A +L+ +M E G+ +N +++ L+ N + V
Sbjct: 149 PDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVAL 208
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ + + K PD+VTY + + + D + A ++++ KI+P + Y+T+
Sbjct: 209 VDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+ A EM+ + R N V Y+SL+ N G + R+ M+ N
Sbjct: 269 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
++ +I + VK G+ +AE +YDE S D + L+ + ++L+ A+ + ++
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341
+K P T+ L G+ K ++++ +E F++ S R V + T + + +
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM--SQRGLVGNTVTYTTLIHGFFQARE 446
Query: 342 IDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKV 398
D A+ + + + G + Y+ LL GK+ L++ E +Q+ ++ D T +
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 399 L 399
+
Sbjct: 507 M 507
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 147/328 (44%), Gaps = 4/328 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
+ ++ + K +A L +M G + YN ++ + G+ ++L + ++
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
+ +P+VVT++ + A + AEK + E+ K IDPD +YS+L + + + ++
Sbjct: 320 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 379
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + M + C N V Y++L+ + DE + ++++M N YT +I
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIH 439
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ E + A+ ++ + S D +ILL N ++E A + L ++P
Sbjct: 440 GFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ ++ G K G++E + F S++ P+ T + +G + A+
Sbjct: 500 DIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 348 LLVTLRNAGHV-STEIYNSLLRTYAKAG 374
L ++ G + + YN+L+R + + G
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 132/330 (40%), Gaps = 4/330 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 108
S LL + + K +L E+M G Y+ ++N + QL +L ++ K
Sbjct: 85 SKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMK 144
Query: 109 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
PD+VT N L N A ++ + PD +++TL + +
Sbjct: 145 LGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASE 204
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + M + C+ + V Y +++ G D L + KKM + Y +I
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+L A N++ E ++ + N L+ N + A + ++ + I P
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ L ++K+G++ + + + + I R PD ++ N +D A+H
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 348 LL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ + + + YN+L++ + KA ++
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKRV 412
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 104/231 (45%), Gaps = 5/231 (2%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+ + + K+ E L +MS+ G + + Y +++ + + D + +++
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
PD++TY++ L + ETA F L+++K++PD +Y+ + K
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
E + + + N V Y++++S + G K+E ++++M + Y +
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNILLAAYINRNQLEM 272
I + ++ G+ + + E S GD V N+L ++++ L+M
Sbjct: 578 IRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRLDKSFLKM 628
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 5/247 (2%)
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ A F ++ K++ P + +S L S KM + + ++M+ N YS L
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
++ + L + KMM L + + +++ A ++ + +
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
D N L+ N+ A + +R+V KG +P T+ ++ G K+G ++ L
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 311 CFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 368
KK G + V + I A L +++ A +L + N G + YNSL+R
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDA---LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 369 TYAKAGK 375
G+
Sbjct: 300 CLCNYGR 306
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 167/380 (43%), Gaps = 10/380 (2%)
Query: 24 QALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 83
+A+Q ++ F P K R +C+ LLH + + K+ + + + M G Y
Sbjct: 210 EAIQCFSKMKRFRVFP-KTR---SCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 265
Query: 84 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142
N M++ G ++ + +E+K + PD VTYN + + F E+K
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 325
Query: 143 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 202
+PD I+Y+ L + + K +EM+ + N V+YS+L+ + G +
Sbjct: 326 MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ 385
Query: 203 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262
++ + M + N+ YT +I + K+G A + +E + + L+
Sbjct: 386 AIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALID 445
Query: 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 322
+ +++ AE + ++ T G+ P ++ L G++K M++ LE + G R
Sbjct: 446 GLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG--RGI 503
Query: 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LI 379
PD L L I+ A+ ++ ++ G ++ IY +L+ Y K+G L
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 563
Query: 380 IVERMQKDNVQMDAETQKVL 399
+++ M++ ++++ T VL
Sbjct: 564 LLDEMKELDIEVTVVTFCVL 583
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 4/304 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +AL+ ++ EAE L KM G + YN +++ ++ +D+ ++L EL
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 498
Query: 107 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
K + PD++ Y ++ S E A+ E+K+ I + + Y+TL Y K P
Sbjct: 499 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-KMNDAEYTC 224
+ L EM++ V + L+ + + + ++ + F + N A +T
Sbjct: 559 TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 618
Query: 225 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284
+I L K + E A ++++ D L+ + + A + +++ G
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678
Query: 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344
+K + L WG Q++K ++ IG PD L + K E G ID
Sbjct: 679 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIH--PDEVLCISVLKKHYELGCIDE 736
Query: 345 AEHL 348
A L
Sbjct: 737 AVEL 740
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 121/301 (40%), Gaps = 14/301 (4%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
++ + ++ I G L++ Q ++K+ P + N L A + ++ F ++
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 142 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201
P +Y+ + K E A +EM+ R + V Y+S++ + +G D
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314
Query: 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-- 259
+ + +++M + + + Y +I+ K G+ Y E + G+ PN+
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK-----GNGLKPNVVS 369
Query: 260 ---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316
L+ A+ ++ A FY + G+ P T+ L K G + + +
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK 375
+W + TA + L + + AE L + AG + + YN+L+ + KA
Sbjct: 430 QVGVEW--NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 376 M 376
M
Sbjct: 488 M 488
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 75/431 (17%), Positives = 162/431 (37%), Gaps = 49/431 (11%)
Query: 8 GAQVRAQSYRQRV---AQAQALQTRARENFFENLPDKMRG--PDTCS--ALLHSYVQNKK 60
GA R + + + A FE + K RG PDT + +++ + + +
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM--KFRGLVPDTVTYNSMIDGFGKVGR 312
Query: 61 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNL 119
+ E+M + + YN ++N + G+L + +E+K N P+VV+Y+
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----------------- 162
+ A + + A K ++++++ + P+ +Y++L K+
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432
Query: 163 ------------------ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204
E ++A +M+ N +Y++L+ + D L
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 264
+ ++ K + Y I L L + E A+ + +E + + + L+ AY
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 265 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 324
+ + I+ T+ +L G K + K ++ F + I +
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR-ISNDFGLQA 611
Query: 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIV 381
+ + TA + L + ++ A L + G V Y SL+ K G + L +
Sbjct: 612 NAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 671
Query: 382 ERMQKDNVQMD 392
++M + +++D
Sbjct: 672 DKMAEIGMKLD 682
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 184/435 (42%), Gaps = 56/435 (12%)
Query: 27 QTRARENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP--L 81
Q + E+ ++P PD S +L+ + +N A ++E + + GF+ P +
Sbjct: 71 QVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIV 130
Query: 82 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
+N + N + LD+V + + K SP+VVTY+ W+ + + A K+F +K
Sbjct: 131 SFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMK 190
Query: 142 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS--------- 192
+ + P+ ++++ L Y K E A + KEM + N V Y++L+
Sbjct: 191 RDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQ 250
Query: 193 ----LYTNM----------------------GYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226
+Y+ M G D ++ KM++ +++ Y +I
Sbjct: 251 RAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVII 310
Query: 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286
S L G+ ++A I ++ E D + ++ AY +++ A + Y++L+ +G +
Sbjct: 311 SGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFE 370
Query: 287 PCYTTWELLTWGYLKKGQMEK--VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344
P + G K GQ+ + V C +KA + + T + L ++GD
Sbjct: 371 PDVVALSTMIDGIAKNGQLHEAIVYFCIEKA---------NDVMYTVLIDALCKEGDFIE 421
Query: 345 AEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM--PLIIVERMQKDNVQMD--AETQKVL 399
E L + AG V + +Y S + K G + + RM ++ + +D A T +
Sbjct: 422 VERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIY 481
Query: 400 KITSEMPVSEVSSIF 414
+ S+ + E +F
Sbjct: 482 GLASKGLMVEARQVF 496
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 8/314 (2%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 105
T +AL+ + + + AE + +M E L Y +++ + G D + L +
Sbjct: 235 TYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
L + D+ Y + ++ + A + +++K+ + PD + ++T+ + Y K
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRM 354
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A ++ +R + VA S+++ G E + + K ND YT +
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF-----CIEKANDVMYTVL 409
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I +L K G+F + E ++ + D + +A + L A R+V +G+
Sbjct: 410 IDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGL 469
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
+ L +G KG M + + F + + S PD + E++G++ A
Sbjct: 470 LLDLLAYTTLIYGLASKGLMVEARQVFDEMLNS--GISPDSAVFDLLIRAYEKEGNMAAA 527
Query: 346 EHLLVTLRNAGHVS 359
LL+ ++ G V+
Sbjct: 528 SDLLLDMQRRGLVT 541
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 139/284 (48%), Gaps = 10/284 (3%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-- 106
+A++ Y ++ K ++A+ L++ M + G + + +N ++N + +G L P + EL
Sbjct: 229 NAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGL--TPNLAVELLD 286
Query: 107 ---KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163
PD +TYN L+AC+ ++ + A K F +++ + PD +Y+ + S+Y +
Sbjct: 287 MVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCG 346
Query: 164 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 223
L +A E+E + + V Y+SLL + ++V ++++M + ++ Y
Sbjct: 347 LAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYN 406
Query: 224 CVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVT 282
+I K G+ + A +Y + + +SG D +L+ + N+ A + + ++
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLD 466
Query: 283 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326
GIKP T+ L GY K G+ E+ + F + S K PD+
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTK--PDN 508
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 4/234 (1%)
Query: 32 ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E F L K PD T ++LL+++ + + + + + + ++M + GF K + YN ++++
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 90 YISNGQLDKVPQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 147
Y GQLD Q+ +++K +PD +TY + + + N A E+ I P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471
Query: 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 207
+YS L Y K E+A T M + + + +AYS +L + + ++
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261
+ M+S + Y +I L+K + + + E + G + ++L+
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLV 585
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 44/345 (12%)
Query: 35 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
FE++ PD T +A++ Y + +AEAE L ++ GF + YN +L +
Sbjct: 320 FEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFAR 379
Query: 93 NGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWI 150
+KV ++ Q+++K D +TYN + Q + A + + ++K + +PD I
Sbjct: 380 ERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAI 439
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
+Y+ L K +AA + EM + YS+L+ Y G ++E + M
Sbjct: 440 TYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM 499
Query: 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270
+ K ++ Y+ ++ L++ E KA W
Sbjct: 500 LRSGTKPDNLAYSVMLDVLLRGNETRKA------W------------------------- 528
Query: 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 330
Y +++ G P YT +EL+ G +K+ + + + +K I + + + L
Sbjct: 529 ----GLYRDMISDGHTPSYTLYELMILGLMKENRSDDI----QKTIRDMEELCGMNPLEI 580
Query: 331 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375
++ E D+ A L V + N + + S+L +Y+ +G+
Sbjct: 581 SSVLVKGECFDL-AARQLKVAITNGYELENDTLLSILGSYSSSGR 624
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 6/266 (2%)
Query: 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--LPEKAATT 171
V YN + + A++ +++ PD IS++TL + +K P A
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231
L + R + + Y++LLS + D +++++ M + + + Y +IS +
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344
Query: 232 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 291
G +AE ++ E E D N LL A+ E + Y ++ G T
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMT 404
Query: 292 WELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 350
+ + Y K+GQ++ L+ +K G S R PD T + L + A L+
Sbjct: 405 YNTIIHMYGKQGQLDLALQLYKDMKGLSGRN--PDAITYTVLIDSLGKANRTVEAAALMS 462
Query: 351 TLRNAGHVST-EIYNSLLRTYAKAGK 375
+ + G T + Y++L+ YAKAGK
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGK 488
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/285 (18%), Positives = 122/285 (42%), Gaps = 11/285 (3%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 109
+L ++ + E + + M G+L Y M+ L ++ M+ E+++ N
Sbjct: 863 MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
++ +N L + D + + + +K+T ++PD +Y+TL +Y + PE+
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
+++M Y SL+S + ++ +++++++S K++ + Y ++
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
G KAE + ++ ++L+ +Y + + AE + L ++
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTT 1102
Query: 290 TTWELLTWGYLKK----GQMEKVLECFKKAIGSVRKWVPDHRLIT 330
+ + YL+ +E++LE K+ + PDHR+ T
Sbjct: 1103 LPYSSVIDAYLRSKDYNSGIERLLEMKKEGLE------PDHRIWT 1141
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 155/355 (43%), Gaps = 24/355 (6%)
Query: 32 ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E+ NL R PD T ++L+ +Y Q A A+ M G N +L+
Sbjct: 772 ESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHA 831
Query: 90 YISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 145
+G+L+++ +++EL+ K + ++ L L A A + +K + +K
Sbjct: 832 LCVDGRLEELYVVVEELQDMGFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAGY 888
Query: 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
P Y + L K + A + EME+ + ++S+L +YT + + ++
Sbjct: 889 LPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQ 948
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI--LLA 262
+++++ + ++ Y +I + + E Y + + G DP++ L++
Sbjct: 949 VYQRIKETGLEPDETTYNTLI---IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLIS 1005
Query: 263 AYINRNQLEMAESFYNRLVTKGIK---PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319
A+ + LE AE + L++KG+K Y T ++ + EK+L+ K A +
Sbjct: 1006 AFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA--GI 1063
Query: 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 373
+ L+ +Y+ G+ AE +L L++ ++T Y+S++ Y ++
Sbjct: 1064 EPTLATMHLLMVSYSS---SGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Query: 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 105
DT +L+ ++ + K +AE L E++ G Y+ M+ + +G K ++LQ
Sbjct: 998 DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057
Query: 106 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164
+K P + T +L + + +S + + AEK LK T+++ + YS++ Y++ +
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKD 1117
Query: 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
L EM+K + ++ + + K EV+ + K +
Sbjct: 1118 YNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKAL 1163
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/324 (19%), Positives = 133/324 (41%), Gaps = 29/324 (8%)
Query: 86 MLNLYISNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLELKKT 143
+L Y S+G+ + ++L+ LK++ S ++T L + C N ++ F
Sbjct: 615 ILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYF------ 668
Query: 144 KIDP---DW-----ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195
DP W Y TL + E +A+ ++ C + S++ +Y
Sbjct: 669 -ADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYC 727
Query: 196 NMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254
+G+ + ++ + + F YT +I + K ++KAE++ T D
Sbjct: 728 KLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDL 787
Query: 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLEC 311
+ N L++AY E A + +N ++ G P + +L G++E+ V+E
Sbjct: 788 KTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEE 847
Query: 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTY 370
+ + K I + G+I + + +++ AG++ T +Y ++
Sbjct: 848 LQDMGFKISK-----SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902
Query: 371 AKAGKM--PLIIVERMQKDNVQMD 392
K ++ I+V M++ N +++
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVE 926
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 1/264 (0%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +LL+ + Q + EA +L++ M GF+ + YN ++N N L+ ++ +
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
KK D VTYN ++ ++ A + ++ K KIDP+ I ++ L ++K
Sbjct: 211 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 270
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+A KEM +R+ N Y+SL++ + G + ++ M+S + Y +
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 330
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I+ K E ++ E GD N L+ Y +L +A+ +NR+V G+
Sbjct: 331 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390
Query: 286 KPCYTTWELLTWGYLKKGQMEKVL 309
P T+ +L G++EK L
Sbjct: 391 SPDIVTYNILLDCLCNNGKIEKAL 414
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 113/296 (38%), Gaps = 38/296 (12%)
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+K P +VT L N + A + P+ + Y+T+ + K
Sbjct: 141 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 200
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
A MEK+ R + V Y++L+S +N G + R+ + M+ N +T +
Sbjct: 201 NNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTAL 260
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I + VK G +A N+Y E S + N L+ + L A+ ++ +V+KG
Sbjct: 261 IDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGC 320
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
P T+ L G+ K ++E ++ F ++ QG + A
Sbjct: 321 FPDVVTYNTLITGFCKSKRVEDGMKLF---------------------CEMTYQGLVGDA 359
Query: 346 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 399
YN+L+ Y +AGK+ + + RM V D T +L
Sbjct: 360 F---------------TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNIL 400
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+H Y Q K A+ + +M +CG + YN +L+ +NG+++K M+++L
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420
Query: 107 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+K+ D++TYN+ + + + A F L + + PD I+Y T+ S + L
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 480
Query: 166 EKAATTLKEMEK 177
+A + M++
Sbjct: 481 READKLCRRMKE 492
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 1/222 (0%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
+ +++ ++ G L + + +E ++++ P+V TYN + A+ F +
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 142 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201
PD ++Y+TL + + K + E EM + + Y++L+ Y G +
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 376
Query: 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261
+++ +M+ + Y ++ L G+ EKA + ++ + D NI++
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 436
Query: 262 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 303
++L+ A + L KG+KP + + G +KG
Sbjct: 437 QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Query: 35 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
F+ + K PD T + L+ + ++K+ + L +M+ G + YN +++ Y
Sbjct: 312 FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQ 371
Query: 93 NGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
G+L+ ++ + SPD+VTYN+ L + E A +L+K+++D D I+
Sbjct: 372 AGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIIT 431
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
Y+ + + + ++A + + ++ + + +AY +++S G + E ++ ++M
Sbjct: 432 YNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 51/247 (20%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 107
+AL+ ++V+ EA L ++M + YN ++N + +G L M +
Sbjct: 258 TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 317
Query: 108 KNTSPDVVTYN-LWLAACASQNDKE----------------------------------T 132
K PDVVTYN L C S+ ++
Sbjct: 318 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 377
Query: 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192
A+K F + + PD ++Y+ L EKA +++++K + + Y+ ++
Sbjct: 378 AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQ 437
Query: 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG---------------EFEK 237
E +++ + K + Y +IS L + G F
Sbjct: 438 GLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 497
Query: 238 AENIYDE 244
+E IYDE
Sbjct: 498 SERIYDE 504
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190
+ A F E+ +++ P + ++ + ++ KM + +ME + +++ L
Sbjct: 61 DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 120
Query: 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250
+ + L + KMM L + + +++ + F++A ++ D S+ G
Sbjct: 121 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVD---SMDG 177
Query: 251 TGDPRVPNILLAAYI------NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 304
G VPN+++ + NR+ E FY + KGI+ T+ L G G+
Sbjct: 178 FG--FVPNVVIYNTVINGLCKNRDLNNALEVFYC-MEKKGIRADAVTYNTLISGLSNSGR 234
Query: 305 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV-TLRNAGHVSTEIY 363
+ + RK P+ TA + ++G++ A +L +R + + Y
Sbjct: 235 WTDAARLLRDMVK--RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 364 NSLLRTYAKAG 374
NSL+ + G
Sbjct: 293 NSLINGFCIHG 303
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 11/388 (2%)
Query: 34 FFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
F EN+ PD C+ L+ + + K+ +A ++E + G + + YN M++ Y
Sbjct: 124 FLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYC 183
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
G+++ +L + + SPDVVTYN L + + A + + + PD I+
Sbjct: 184 KAGEINNALSVLDRM--SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
Y+ L + A L EM R C + V Y+ L++ G DE ++ M
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S + N + ++ S+ G + AE + + + NIL+ + L
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
A ++ G +P ++ L G+ K+ +M++ +E ++ + R PD
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS--RGCYPDIVTYNT 419
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDN 388
L + G ++ A +L L + G I YN+++ AKAGK + +++ M+ +
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 389 VQMDAETQKVL--KITSEMPVSEVSSIF 414
++ D T L ++ E V E F
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFF 507
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 122/280 (43%), Gaps = 3/280 (1%)
Query: 34 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
F ++P P+ T + +L S + +AE L+ M GF + +N ++N
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 92 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150
G L + +L+++ + P+ ++YN L + + A + + PD +
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
+Y+T+ + K E A L ++ + C + Y++++ G + +++ +M
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270
+ K + Y+ ++ L + G+ ++A + E+E + + N ++ Q
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310
+ A F ++ +G KP T++ +L G +G ++ LE
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Query: 33 NFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
+ E +P P++ S LLH + + KK A +E+M G + YN ML
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
Query: 91 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
+G+++ ++L +L K SP ++TYN + A A K E++ + PD
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT 484
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
I+YS+L + ++A E E+ R N V ++S++ D +
Sbjct: 485 ITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF 544
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245
M++ K N+ YT +I L G ++A + +E
Sbjct: 545 MINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 99/215 (46%), Gaps = 6/215 (2%)
Query: 1 MERRRPHGAQVRAQSYRQRVAQ--AQALQTRARENFFENLPDKMRGPD--TCSALLHSYV 56
+E+ HG Q + SY + + RA E + E + + PD T + +L +
Sbjct: 367 LEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE-YLERMVSRGCYPDIVTYNTMLTALC 425
Query: 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVV 115
++ K +A ++ ++S G + YN +++ G+ K ++L E++ K+ PD +
Sbjct: 426 KDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTI 485
Query: 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175
TY+ + + + + A K F E ++ I P+ ++++++ K ++A L M
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM 545
Query: 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
R C+ N +Y+ L+ G E L + ++
Sbjct: 546 INRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 153/346 (44%), Gaps = 9/346 (2%)
Query: 35 FENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
F+ +P + R + +AL+++Y +N + + L+++M L YN ++N +
Sbjct: 164 FDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINA-CA 222
Query: 93 NGQLD--KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
G LD + + E++ + PD+VTYN L+ACA + + AE F + I PD
Sbjct: 223 RGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDL 282
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+YS L + K+ EK L EM + +Y+ LL Y G E + ++ +
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
M + N Y+ +++ + G ++ ++ E +S + D NIL+ +
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 329
+ + ++ +V + I+P T+E + + K G E + + + VP +
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM--TANDIVPSSKAY 460
Query: 330 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 374
T + + A T+ G + S E ++SLL ++A+ G
Sbjct: 461 TGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG 506
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 128/303 (42%), Gaps = 5/303 (1%)
Query: 32 ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E F + D PD T S L+ ++ + ++ + L+ +M+ G L YN +L
Sbjct: 267 EMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 90 YISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148
Y +G + + + +++ +P+ TY++ L + + FLE+K + DPD
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPD 386
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+Y+ L ++ + ++ T +M + + Y ++ G ++ +I +
Sbjct: 387 AATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQ 446
Query: 209 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268
M + + YT VI + + +E+A ++ + + LL ++
Sbjct: 447 YMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG 506
Query: 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328
++ +E+ +RLV GI T+ Y + G+ E+ ++ + S + PD R
Sbjct: 507 LVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS--RCDPDERT 564
Query: 329 ITA 331
+ A
Sbjct: 565 LEA 567
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 45 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PD S LL +Y ++ EA + +M G Y+ +LNL+ +G+ D V Q+
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 103 LQELK------------------------------------KNTSPDVVTYNLWLAACAS 126
E+K +N PD+ TY + AC
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGK 434
Query: 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186
E A K + I P +Y+ + + + L E+A M + +
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
+ SLL + G E I +++ N + I + + G+FE+A Y + E
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDME 554
Query: 247 SISGTGDPRVPNILLAAY 264
D R +L+ Y
Sbjct: 555 KSRCDPDERTLEAVLSVY 572
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Query: 204 LRIWKKMM-SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262
LR++K M ++ K N+ YT +IS L + G +K ++DE S + L+
Sbjct: 125 LRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALIN 184
Query: 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QMEKVLECFKKAIGSVRK 321
AY + E + +R+ + I P T+ + + G E +L F + +R
Sbjct: 185 AYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE----MRH 240
Query: 322 WVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 372
++T YN L +G D AE + T+ + G V Y+ L+ T+ K
Sbjct: 241 EGIQPDIVT--YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK 294
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 152/345 (44%), Gaps = 5/345 (1%)
Query: 35 FENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
FE+L R P T + ++ Y K EA +L+E+ G + + YN +L
Sbjct: 296 FEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355
Query: 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 152
G++D+ ++ +E+KK+ +P++ TYN+ + +TA + ++K + P+ +
Sbjct: 356 MGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTV 415
Query: 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212
+ + K + ++A +EM+ + C + + + SL+ +G D+ ++++KM+
Sbjct: 416 NIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD 475
Query: 213 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272
+ N YT +I + G E IY + + + + D ++ N + + E
Sbjct: 476 SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEK 535
Query: 273 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332
+ + + + P ++ +L G +K G + E F + V D R
Sbjct: 536 GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM--KEQGCVLDTRAYNIV 593
Query: 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 376
+ + G ++ A LL ++ G T + Y S++ AK ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/311 (18%), Positives = 141/311 (45%), Gaps = 5/311 (1%)
Query: 67 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACA 125
L ++M E G+ + ++ + G++D +L E+K ++ D+V YN+ + +
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 185
+ A K F E++ + PD ++Y+++ + K ++A + +EK
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTY 309
Query: 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245
AY++++ Y + G DE + ++ + + + Y C+++ L K+G+ ++A +++E
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369
Query: 246 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 305
+ + NIL+ +L+ A + + G+ P T ++ K ++
Sbjct: 370 KK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKL 428
Query: 306 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYN 364
++ F++ + PD + + L + G +D A + + ++ ++ +Y
Sbjct: 429 DEACAMFEEM--DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486
Query: 365 SLLRTYAKAGK 375
SL++ + G+
Sbjct: 487 SLIKNFFNHGR 497
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 120/289 (41%), Gaps = 38/289 (13%)
Query: 35 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
FE + + PD + S L+H ++ + E L M E G + YN +++ +
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599
Query: 93 NGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
G+++K Q+L+E+K K P VVTY + A + + A F E K +I+ + +
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Query: 152 YSTLT--------------------------SLY---------IKMELPEKAATTLKEME 176
YS+L +LY +K E +A + M+
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK 719
Query: 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236
+ C N+V Y L++ + ++ W++M K + YT +IS L K G
Sbjct: 720 ELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIA 779
Query: 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
+A ++D +++ G D N ++ N N+ A S + +G+
Sbjct: 780 EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 11/343 (3%)
Query: 79 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 137
CP YN +L + D + Q+L E+ P V T + C N
Sbjct: 97 CPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVV 156
Query: 138 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197
++K K P + +Y+TL + + + T ++M++ +++L+ +
Sbjct: 157 QMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKE 216
Query: 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257
G D L + +M S + Y I S K+G+ + A + E E+ D
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--KKA 315
++ N+L+ A + L PC + + GY G+ ++ ++A
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336
Query: 316 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375
GS+ + + ++T L + G +D A + ++ + YN L+ +AGK
Sbjct: 337 KGSIPSVIAYNCILTC----LRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392
Query: 376 M--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 414
+ + + MQK + + T ++ ++ + E ++F
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 125/282 (44%), Gaps = 3/282 (1%)
Query: 35 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92
FE + K+ PD T +L+ + + +A + EKM + + Y ++ + +
Sbjct: 435 FEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Query: 93 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
+G+ + ++ +++ +N SPD+ N ++ + E F E+K + PD S
Sbjct: 495 HGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS 554
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS L IK + M+++ C + AY+ ++ + G ++ ++ ++M
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
+ + Y VI L K+ ++A +++E +S + + + L+ + +++
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 313
A L+ KG+ P TW L +K ++ + L CF+
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 3/300 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L++ N K ++A L+++M E GF + Y +LN+ +GQ ++L+++
Sbjct: 195 TLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 107 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+ +N D V Y++ + + A F E++ D I+Y+TL +
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A L++M KR N V +S L+ + G E ++ K+MM N Y +
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I K E+A + D S D NIL+ Y N+++ + + +G+
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
T+ L G+ + G++E + F++ + R+ PD + L + G+++ A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS--RRVRPDIVSYKILLDGLCDNGELEKA 492
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 151/355 (42%), Gaps = 6/355 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
S ++ ++ A L +M GF + YN ++ + + G+ D ++L++ +K
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
+ SP+VVT+++ + + + A++ E+ + I P+ I+Y++L + K E+
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + M + C + + ++ L++ Y D+ L ++++M N Y ++
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ G+ E A+ ++ E S D ILL + +LE A + ++ ++
Sbjct: 447 GFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL 506
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
+ ++ G +++ + F ++ D R ++L + + A+
Sbjct: 507 DIGIYMIIIHGMCNASKVDDAWDLFCSL--PLKGVKLDARAYNIMISELCRKDSLSKADI 564
Query: 348 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 399
L + GH E+ YN L+R + ++E M+ D T K++
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 156/367 (42%), Gaps = 46/367 (12%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + ++ +Y ++ + EA ++M E G + + +N M+++Y +NGQL +V +++ +
Sbjct: 300 TYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM 359
Query: 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166
K + +PD TYN+ ++ ND E A F E+K + PD +SY TL + + E
Sbjct: 360 KLHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVE 419
Query: 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR---IWKKMMSLFAKMNDAEYT 223
+A + EM+ + S+L +Y + E+L W K + M+ Y+
Sbjct: 420 EAEGLIAEMDDDNVEIDEYTQSALTRMYV----EAEMLEKSWSWFKRFHVAGNMSSEGYS 475
Query: 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283
I + + G +AE ++ + ++ N+++ AY E A + +++
Sbjct: 476 ANIDAYGERGYLSEAERVFICCQEVNKRTVIEY-NVMIKAYGISKSCEKACELFESMMSY 534
Query: 284 GIKPCYTTWELLTW-----------------------------------GYLKKGQMEKV 308
G+ P T+ L ++K GQ+
Sbjct: 535 GVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMA 594
Query: 309 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 367
E +K+ + PD + N + G++ A + ++ AG ++ IYNSL+
Sbjct: 595 EEVYKEMVE--YNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLI 652
Query: 368 RTYAKAG 374
+ Y K G
Sbjct: 653 KLYTKVG 659
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 135/285 (47%), Gaps = 13/285 (4%)
Query: 34 FFENLPDKMRGPDTCSALLHSYVQNKKSAE----AEALMEKMSECGFLKCPLPYNHMLNL 89
FE++ PD C+ ++ VQ SA+ +EKM E G++ +PY +++
Sbjct: 527 LFESMMSYGVTPDKCT--YNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISS 584
Query: 90 YISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148
++ GQL+ ++ +E+ + N PDVV Y + + A A + + A +K+ I +
Sbjct: 585 FVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGN 644
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV--AYSS--LLSLYTNMGYKDEVL 204
+ Y++L LY K+ ++A +++ ++C K + Y+S +++LY+ +
Sbjct: 645 SVIYNSLIKLYTKVGYLDEAEAIYRKL-LQSCNKTQYPDVYTSNCMINLYSERSMVRKAE 703
Query: 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 264
I+ M + N+ + ++ K G FE+A I + + DP N +L +
Sbjct: 704 AIFDSMKQR-GEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLF 762
Query: 265 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 309
+ + A + +V+ GI+P +T++ L +K G +K +
Sbjct: 763 ALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAV 807
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 42/298 (14%)
Query: 83 YNHMLNLYISNGQLDKVPQML---QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 139
Y+ ++ Y G L + ++ QE+ K T V+ YN+ + A E A + F
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKRT---VIEYNVMIKAYGISKSCEKACELFES 530
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+ + PD +Y+TL + ++P K L++M + + + Y +++S
Sbjct: 531 MMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVIS------- 583
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
S VKLG+ AE +Y E + D V +
Sbjct: 584 ----------------------------SFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGV 615
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319
L+ A+ + ++ A S+ + GI + L Y K G +++ ++K + S
Sbjct: 616 LINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSC 675
Query: 320 RK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376
K PD N E+ + AE + +++ G + + +L Y K G+
Sbjct: 676 NKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRF 733
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 12/235 (5%)
Query: 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233
EM ++ + Y +L+ +Y+ G K L KM + + ++ V+ K
Sbjct: 212 EMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAR 271
Query: 234 EFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIKP 287
EF+KAE + +W D V N ++ Y Q++ A + R++ +GI P
Sbjct: 272 EFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVP 331
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ + Y GQ+ +V K PD R + + DI+ A
Sbjct: 332 TTVTFNTMIHIYGNNGQLGEVTSLMKTM---KLHCAPDTRTYNILISLHTKNNDIERAGA 388
Query: 348 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 399
+++ G + Y +LL ++ + ++ M DNV++D TQ L
Sbjct: 389 YFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSAL 443
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKM-SECGFLKCPLPY--NHMLNLYISNGQLDKVPQMLQE 105
++L+ Y + EAEA+ K+ C + P Y N M+NLY + K +
Sbjct: 649 NSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDS 708
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+K+ + T+ + L E A + ++++ KI D +SY+++ L+
Sbjct: 709 MKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRF 768
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
++A T KEM + + + SL ++ +G + +R +++ K +
Sbjct: 769 KEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELWIST 828
Query: 226 ISSLVKLGE 234
+SSLV +G+
Sbjct: 829 LSSLVGIGD 837
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 56/339 (16%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
YN +LN G +D++ Q+ E L+ P++ TYN + + E A + ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 142 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201
+ +DPD+ +Y++L Y + + + A EM + CR+N VAY+ L+
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC------ 299
Query: 202 EVLRIWKKMMSLFAKMNDAE-------YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254
V R + M LF KM D E YT +I SL +A N+ E E +
Sbjct: 300 -VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNI 358
Query: 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK- 313
+L+ + ++ + E A +++ KG+ P T+ L GY K+G +E ++ +
Sbjct: 359 HTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVEL 418
Query: 314 --------------------------KAIGSV-----RKWVPDHRLITAAYNKLEE---- 338
KA+G + RK +PD YN L +
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD----VVTYNSLIDGQCR 474
Query: 339 QGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 376
G+ D A LL + + G V + Y S++ + K+ ++
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 513
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 150/345 (43%), Gaps = 11/345 (3%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+ S K +A L+ +M E G + + YN ++N Y G ++ +++ +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 107 K-KNTSPDVVTYN-LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164
+ + SP+ TYN L C S K A ++ + K+ PD ++Y++L +
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKSNVHK--AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477
Query: 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224
+ A L M R ++ Y+S++ +E ++ + N YT
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537
Query: 225 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284
+I K G+ ++A + ++ S + + N L+ +L+ A ++V G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344
++P +T +L LK G + F++ + S K PD T +G +
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK--PDAHTYTTFIQTYCREGRLLD 655
Query: 345 AEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGK--MPLIIVERMQ 385
AE ++ +R G VS ++ Y+SL++ Y G+ +++RM+
Sbjct: 656 AEDMMAKMRENG-VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMR 699
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 133/342 (38%), Gaps = 23/342 (6%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 105
T +AL+H + K EA L EKM + G +++ + +G D Q+
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
L T PD TY ++ + AE ++++ + PD +YS+L Y +
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQT 688
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSL------------------LSLYTNMGYKDEVLRIW 207
A LK M C ++ + SL L +NM D V+ +
Sbjct: 689 NFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELL 748
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-VPNILLAAYIN 266
+KM+ N Y +I + ++G AE ++D + G V N LL+
Sbjct: 749 EKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326
+ A + ++ G P + ++L G KKG+ E+ F+ + + D
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC--GYYEDE 866
Query: 327 RLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLL 367
+ + +QG ++ L V +N S++ Y+ L+
Sbjct: 867 LAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 155/371 (41%), Gaps = 12/371 (3%)
Query: 25 ALQTRARENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82
L ++ + E L DK+ P+ T + +++ Y + EA + K+ E G
Sbjct: 197 GLVDEMKQVYMEMLEDKV-CPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFT 255
Query: 83 YNHMLNLYISNGQLDKVPQMLQE--LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140
Y ++ Y LD ++ E LK +V +L C ++ E A F+++
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE-AMDLFVKM 314
Query: 141 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200
K + P +Y+ L E +A +KEME+ + N Y+ L+ +
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF 374
Query: 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
++ + +M+ N Y +I+ K G E A ++ + ES + + R N L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434
Query: 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 320
+ Y N + A N+++ + + P T+ L G + G + ++ + R
Sbjct: 435 IKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL--SLMNDR 491
Query: 321 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--P 377
VPD T+ + L + ++ A L +L G + + +Y +L+ Y KAGK+
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 378 LIIVERMQKDN 388
+++E+M N
Sbjct: 552 HLMLEKMLSKN 562
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 47/287 (16%)
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNRV-AYSSLLSLYTNMGYKDEVLRIW 207
IS S ++SL+ ++L K A + R K+ V +Y+SLL+L N GY V +I
Sbjct: 88 ISPSHVSSLF-SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIR 146
Query: 208 KKM-------------MSLFAKMNDAE------------YTCVISSLVKLGEFEKAENIY 242
M + L KMN E Y +++SL + G ++ + +Y
Sbjct: 147 LLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206
Query: 243 DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 297
E D PNI ++ Y +E A + +++V G+ P + T+ L
Sbjct: 207 MEMLE-----DKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 298 GYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355
GY ++ ++ + F + G R V LI + L ID A L V +++
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI----HGLCVARRIDEAMDLFVKMKDD 317
Query: 356 GHVST-EIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 399
T Y L+++ + + L +V+ M++ ++ + T VL
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 148/331 (44%), Gaps = 3/331 (0%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 108
+ L+ +++QN + +A ++++M E G YN ++ ++D+ L E+ +
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 109 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
N P+ TY +++ ++ +A+K E+++ + P+ + + L + Y K +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + + M + + Y+ L++ D+ I+++M + Y +I+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
KLG +KA +I+DE T + + N+LL + ++E A+ + + KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ + GY K G + + F + ++ VPD + T + D++ A
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753
Query: 348 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 378
+ T + ST +N+L+ K GK L
Sbjct: 754 IFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 5/333 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T A + Y++ + A A+ +++M ECG L + ++N Y G++ + + +
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+ D TY + + + + AE+ F E++ I PD SY L + + K+
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNM 643
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+KA++ EM + N + Y+ LL + G ++ + +M N Y +
Sbjct: 644 QKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I K G+ +A ++DE + D V L+ N +E A + + KG
Sbjct: 704 IDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGC 762
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWV-PDHRLITAAYNKLEEQGDID 343
+ L K G+ E E + + GS ++ P+ + L ++G+++
Sbjct: 763 ASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822
Query: 344 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 375
A+ L ++NA + T I Y SLL Y K G+
Sbjct: 823 AAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 4/287 (1%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
Y ++ ++ N + ++L+E+K + +PD+ YN + + + A +E+
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 142 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201
+ + P+ +Y S YI+ A +KEM + N+V + L++ Y G
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261
E ++ M+ + YT +++ L K + + AE I+ E D +L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 262 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 321
+ ++ A S ++ +V +G+ P + +L G+ + G++EK E + SV+
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM--SVKG 692
Query: 322 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 367
P+ + + GD+ A L ++ G V + +Y +L+
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 137/330 (41%), Gaps = 4/330 (1%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
++L+ Y + K + L+ +M + + P Y ++ S+G LD +++E +
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
P+VV Y + + A + E+K+ I PD Y++L K + ++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A + L EM + + N Y + +S Y + K+M N T +I+
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLIN 565
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
K G+ +A + Y GD + +L+ ++++ AE + + KGI P
Sbjct: 566 EYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
++ +L G+ K G M+K F + + P+ + G+I+ A+
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVE--EGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 348 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 376
LL + G H + Y +++ Y K+G +
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 135/354 (38%), Gaps = 56/354 (15%)
Query: 32 ENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E F + K PD S L++ + + +A ++ ++M E G + YN +L
Sbjct: 612 EEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGG 671
Query: 90 YISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148
+ +G+++K ++L E+ K P+ VTY + D A + F E+K + PD
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEK------------------------------- 177
Y+TL ++ E+A T +K
Sbjct: 732 SFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791
Query: 178 -------RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230
R + N V Y+ ++ G + ++ +M + YT +++
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 231 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA-----ESFYNRLVTKGI 285
K+G + ++DE + D + ++++ A++ A + F V G
Sbjct: 852 KMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGC 911
Query: 286 KPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVR-KWVPDHRLITAAYNK 335
K +T L G+ K G+M EKV+E VR +++PD + N+
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVME------NMVRLQYIPDSATVIELINE 959
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/415 (18%), Positives = 157/415 (37%), Gaps = 57/415 (13%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T L+ + K+ +A++L+ +M G Y+ +++ + D ++ E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338
Query: 107 KK---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163
N P Y+ + + + E A+ F + + + P +Y++L Y + +
Sbjct: 339 VSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396
Query: 164 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 223
+ L EM+KR + Y +++ + G D I K+M++ + N YT
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456
Query: 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283
+I + ++ F A + E + D N L+ +++ A SF +V
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516
Query: 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKK------------AIGSVRKWVPDHRLITA 331
G+KP T+ GY++ + + K+ G + ++ ++I A
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576
Query: 332 --AYNKLEEQG-------------------DIDGAEHLLVTLRNAGHVSTEI--YNSLLR 368
AY + +QG +D AE + +R G ++ ++ Y L+
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLIN 635
Query: 369 TYAKAGKM----------------PLIIVERMQKDNVQMDAETQKVLKITSEMPV 407
++K G M P +I+ M E +K ++ EM V
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 1/248 (0%)
Query: 60 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYN 118
K AEAE +M G L + Y +++ + G + + E+ ++ +PDV+TY
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390
Query: 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178
++ D A K F E+ ++PD ++++ L + Y K + A M +
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450
Query: 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238
C N V Y++L+ G D + +M + + N Y +++ L K G E+A
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 510
Query: 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 298
+ E+E+ D L+ AY +++ A+ ++ KG++P T+ +L G
Sbjct: 511 VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNG 570
Query: 299 YLKKGQME 306
+ G +E
Sbjct: 571 FCLHGMLE 578
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 5/293 (1%)
Query: 29 RARENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 86
RA FF + + PD T +A++ + Q EA L +M G + + +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 87 LNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 145
+N Y G + D ++ SP+VVTY + + D ++A + E+ K +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487
Query: 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
P+ +Y+++ + K E+A + E E + V Y++L+ Y G D+
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAY 264
I K+M+ + + +++ G E E + + W G + N L+ Y
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN-WMLAKGIAPNATTFNSLVKQY 606
Query: 265 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317
RN L+ A + Y + ++G+ P T+E L G+ K M++ F++ G
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKG 659
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 133/358 (37%), Gaps = 39/358 (10%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-- 108
++H Q + EA L+ M G+ + Y+ ++N Y G+LDKV ++++ +K+
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 109 ----------------------------------NTSPDVVTYNLWLAACASQNDKETAE 134
PD V Y + + D A
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371
Query: 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 194
K F E+ I PD ++Y+ + S + ++ +A EM + + V ++ L++ Y
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Query: 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254
G+ + R+ M+ N YT +I L K G+ + A + E I +
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 491
Query: 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
N ++ +E A G+ T+ L Y K G+M+K E K+
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551
Query: 315 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYA 371
+G + P N G ++ E LL + G + +NSL++ Y
Sbjct: 552 MLG--KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 141/336 (41%), Gaps = 9/336 (2%)
Query: 46 DTCSALLHSYVQN-KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 104
D+C+ L ++ K+A A + + E G YN +++ G++ + +L
Sbjct: 211 DSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLL 270
Query: 105 ELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163
++ K +PDV++Y+ + + + K +K+ + P+ Y ++ L ++
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330
Query: 164 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 223
+A EM ++ + V Y++L+ + G + + +M S + YT
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390
Query: 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283
+IS ++G+ +A ++ E D L+ Y ++ A +N ++
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450
Query: 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKA--IGSVRKWVPDHRLITAAYNKLEEQGD 341
G P T+ L G K+G ++ E + IG P+ + N L + G+
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG----LQPNIFTYNSIVNGLCKSGN 506
Query: 342 IDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 376
I+ A L+ AG + T Y +L+ Y K+G+M
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 542
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 114/273 (41%), Gaps = 3/273 (1%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PD T + L++ Y + +A + M + G + Y +++ G LD ++
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 103 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
L E+ K P++ TYN + + E A K E + ++ D ++Y+TL Y K
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+KA LKEM + + V ++ L++ + G ++ ++ M++ N
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
+ ++ + A IY + S D + L+ + ++ A + +
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
KG +T+ +L G+LK+ + + E F +
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQ 691
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 147/332 (44%), Gaps = 4/332 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +AL++ N K ++A L+++M E GF + Y +L + +GQ ++L+++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
++ D V Y++ + + A F E++ D I Y+TL +
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ A L++M KR + VA+S+L+ + G E + K+M+ + YT +
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I K + +KA ++ D S + R NIL+ Y N ++ + ++ +G+
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345
T+ L G+ + G++E E F++ + R+ PD + L + G+ + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVS--RRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 346 EHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 376
+ + ++ + IYN ++ A K+
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 112/235 (47%), Gaps = 1/235 (0%)
Query: 81 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 139
+ ++ +++ ++ G+L + ++ +E +++ SPD VTY + +N + A
Sbjct: 318 VAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+ P+ +++ L + Y K L + ++M R + V Y++L+ + +G
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
+ ++++M+S + + Y ++ L GE EKA I+++ E D + NI
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
++ N ++++ A + L KG+KP T+ ++ G KKG + + F+K
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/359 (18%), Positives = 142/359 (39%), Gaps = 39/359 (10%)
Query: 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 110
L S + + K +A L ++M+ + ++ + ++ Q D V + ++++ K
Sbjct: 44 LRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI 103
Query: 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI-------KME 163
+ ++ T ++ + C A A ++ K +PD +++STL + +E
Sbjct: 104 AHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALE 163
Query: 164 LPEK----------------------------AATTLKEMEKRTCRKNRVAYSSLLSLYT 195
L ++ A + M + + N V Y +L +
Sbjct: 164 LVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMC 223
Query: 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 255
G + + +KM K++ +Y+ +I L K G + A N+++E E D
Sbjct: 224 KSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 283
Query: 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315
+ L+ + + + ++ + I P + L ++K+G++ + E K+
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 316 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 373
I R PD T+ + ++ +D A H+L + + G + +N L+ Y KA
Sbjct: 344 IQ--RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 38/260 (14%)
Query: 45 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PD SAL+ +V+ K EAE L ++M + G + Y +++ + QLDK M
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 103 LQEL-KKNTSP-----------------------------------DVVTYNLWLAACAS 126
L + K P D VTYN +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186
E A++ F E+ ++ PD +SY L PEKA +++EK +
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
Y+ ++ N D+ ++ + K + Y +I L K G +A+ ++ + E
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Query: 247 SISGTGDPRVPNILLAAYIN 266
+ + NIL+ A++
Sbjct: 555 EDGHSPNGCTYNILIRAHLG 574
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 9/355 (2%)
Query: 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 109
+++SYVQ++ + + +M + GF+ +N++L + + ++ E K
Sbjct: 99 VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSK 158
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
DV ++ + + C + E + +EL + P+ + Y+TL K EKA
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
EM K N Y+ L++ G K + +++KM N Y CV++ L
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
K G + A ++DE + + N L+ +L A +++ + GI P
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 290 TTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
T+ L G+ G++ K L + K+ G V + L++ K GD GA
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRK----GDTSGAAK 394
Query: 348 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDNVQM--DAETQKVL 399
++ + G +++ Y L+ T+A++ M I R+ + + + D T VL
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 127/288 (44%), Gaps = 2/288 (0%)
Query: 29 RARENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87
+A++ FFE + + T + L++ +N + + EKM E G YN ++
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275
Query: 88 NLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 146
N +G+ Q+ E++ + S ++VTYN + + A K ++K I+
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206
P+ I+Y+TL + + KA + ++++ R + V Y+ L+S + G ++
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266
K+M K + YT +I + + EKA + E + D ++L+ +
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
+ Q+ A + +V K +P + + GY K+G + L+ K+
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 11/256 (4%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+ + K EA ++++M G + YN +++ + G+L K + ++L
Sbjct: 305 TYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364
Query: 107 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
K + SP +VTYN+ ++ + D A K E+++ I P ++Y+ L + + +
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
EKA ME+ + YS L+ + G +E R++K M+ + N+ Y +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 280
I K G +A + E E PN+ ++ + + AE ++
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEE-----KELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539
Query: 281 VTKGIKPCYTTWELLT 296
+ GI P + L++
Sbjct: 540 IDSGIDPSTSILSLIS 555
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 35/170 (20%)
Query: 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE-LLT-----------WGYLKK 302
R+ +++ +Y+ L ++ S++N +V G P + LLT W + +
Sbjct: 95 RLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE 154
Query: 303 GQMEKVLECFKKAI--------GSVRK------------WVPDHRLITAAYNKLEEQGDI 342
+ + VL+ + I G + K + P+ + T + ++G+I
Sbjct: 155 NKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEI 214
Query: 343 DGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG--KMPLIIVERMQKDNV 389
+ A+ L + G V+ E Y L+ K G K + E+MQ+D V
Sbjct: 215 EKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGV 264
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 156/360 (43%), Gaps = 10/360 (2%)
Query: 19 RVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 78
RV++A L R E + PD + T + L++ + K AEA L++KM E G
Sbjct: 173 RVSEALELVDRMVE--MGHKPDLI----TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQP 226
Query: 79 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 137
+ Y +LN+ +GQ ++L+++ ++N D V Y++ + + A F
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286
Query: 138 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197
E++ I + I+Y+ L + + A L++M KR N V +S L+ +
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346
Query: 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257
G E + K+M+ + YT +I K +KA + D S + R
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317
NIL+ Y N+++ + ++ +G+ T+ L G+ + G++ E F++ +
Sbjct: 407 NILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466
Query: 318 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 376
RK P+ + L + G+ + A + + ++ + IYN ++ A K+
Sbjct: 467 --RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 129/301 (42%), Gaps = 5/301 (1%)
Query: 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
M + +K P+ +T++ + + A + + + PD I+ +TL +
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+A + +M + C+ N V Y +L++ G + + +KM K++ +
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
Y+ +I L K G + A N+++E E T + NIL+ + N + + ++
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341
+ I P T+ +L ++K+G++ + E K+ I R PD T+ + ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH--RGIAPDTITYTSLIDGFCKENH 383
Query: 342 IDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKV 398
+D A ++ + + G + +N L+ Y KA ++ L + +M V D T
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443
Query: 399 L 399
L
Sbjct: 444 L 444
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T S L+ S+V+ K EAE L ++M G + Y +++ + LDK QM+ +
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
K P++ T+N+ + N + + F ++ + D ++Y+TL + ++
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 210
A +EM R N V Y LL + G ++ L I++K+
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514
Query: 211 ---MSLFAKMNDA-----------------EYTCVISSLVKLGEFEKAENIYDEWESISG 250
M +K++DA Y +I L K G +AE ++ + E
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574
Query: 251 TGDPRVPNILLAAYIN 266
D NIL+ A++
Sbjct: 575 APDGWTYNILIRAHLG 590
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 160/362 (44%), Gaps = 9/362 (2%)
Query: 34 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93
F E+ + C+ +L + K+ EA L+ KM G + YN+++ +
Sbjct: 432 FDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQ 491
Query: 94 GQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 152
+D + L+K P+ TY++ + C +D++ A + + + I+ + + Y
Sbjct: 492 KNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVY 551
Query: 153 STLTSLYIKMELPEKAATTLKEM--EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
T+ + K+ KA L M EKR C + ++Y+S++ + G D + +++M
Sbjct: 552 QTIINGLCKVGQTSKARELLANMIEEKRLC-VSCMSYNSIIDGFFKEGEMDSAVAAYEEM 610
Query: 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270
N YT +++ L K ++A + DE ++ D L+ + R+ +
Sbjct: 611 CGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNM 670
Query: 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 330
E A + ++ L+ +G+ P + L G+ G M L+ +KK + + D T
Sbjct: 671 ESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRC--DLGTYT 728
Query: 331 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKMPLII--VERMQKD 387
+ L + G++ A L ++ G V E IY ++ +K G+ ++ E M+K+
Sbjct: 729 TLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKN 788
Query: 388 NV 389
NV
Sbjct: 789 NV 790
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 1/230 (0%)
Query: 81 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 139
+ YN +++ + G++D +E+ N SP+V+TY + N + A + E
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDE 644
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+K + D +Y L + K E A+ E+ + ++ Y+SL+S + N+G
Sbjct: 645 MKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGN 704
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
L ++KKM+ + + YT +I L+K G A +Y E +++ D + +
Sbjct: 705 MVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTV 764
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 309
++ + Q + + + P + + G+ ++G +++
Sbjct: 765 IVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAF 814
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 128/275 (46%), Gaps = 5/275 (1%)
Query: 28 TRARENFFENLPDKMRGPDTC---SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 84
++ARE N+ ++ R +C ++++ + + + A A E+M G + Y
Sbjct: 565 SKARE-LLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYT 623
Query: 85 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143
++N N ++D+ +M E+K K D+ Y + +++ E+A F EL +
Sbjct: 624 SLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEE 683
Query: 144 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203
++P Y++L S + + A K+M K R + Y++L+ G
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILA 743
Query: 204 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 263
++ +M ++ ++ YT +++ L K G+F K +++E + + T + + N ++A
Sbjct: 744 SELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAG 803
Query: 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 298
+ L+ A ++ ++ KGI P T+++L G
Sbjct: 804 HYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 142/332 (42%), Gaps = 8/332 (2%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYISNGQLDKVPQMLQELKK- 108
LL++Y +++++ A ++ +M E + PY N L+ + L + ++ +
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPF-FPYVNRTLSALVQRNSLTEAKELYSRMVAI 227
Query: 109 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168
D VT L + A + A + + +PD + YS K A
Sbjct: 228 GVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMA 287
Query: 169 ATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
+ L+EM EK+ C ++ Y+S++ G D+ +R+ +M+S MN T +I+
Sbjct: 288 NSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLIT 347
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
K + A ++D+ E + + ++L+ + ++E A FY ++ G+ P
Sbjct: 348 GHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTP 407
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
+ G+LK + E+ L+ F + S + + + + L +QG D A
Sbjct: 408 SVFHVHTIIQGWLKGQKHEEALKLFDE---SFETGLANVFVCNTILSWLCKQGKTDEATE 464
Query: 348 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL 378
LL + + G + YN+++ + + M L
Sbjct: 465 LLSKMESRGIGPNVVSYNNVMLGHCRQKNMDL 496
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/373 (20%), Positives = 154/373 (41%), Gaps = 14/373 (3%)
Query: 38 LPDKMR--GPD----TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
L DKM GP T S L+ + +N + +A +KM G + ++ ++
Sbjct: 361 LFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWL 420
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
+ ++ ++ E + +V N L+ Q + A + +++ I P+ +S
Sbjct: 421 KGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVS 480
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
Y+ + + + + + A + ++ + N YS L+ + L + M
Sbjct: 481 YNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMT 540
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKA-ENIYDEWESISGTGDPRVPNILLAAYINRNQL 270
S ++N Y +I+ L K+G+ KA E + + E N ++ + ++
Sbjct: 541 SSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEM 600
Query: 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLI 329
+ A + Y + GI P T+ L G K +M++ LE + V+ +P + +
Sbjct: 601 DSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGAL 660
Query: 330 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386
+ K + +++ A L L G + S IYNSL+ + G M L + ++M K
Sbjct: 661 IDGFCK---RSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717
Query: 387 DNVQMDAETQKVL 399
D ++ D T L
Sbjct: 718 DGLRCDLGTYTTL 730
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + L+ +++ A L +M G + + Y ++N GQ KV +M +E+
Sbjct: 726 TYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM 785
Query: 107 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
KKN +P+V+ YN +A + + + A + E+ I PD ++ L S + P
Sbjct: 786 KKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQVGNLQP 845
Query: 166 EKAAT 170
+AA+
Sbjct: 846 VRAAS 850
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 1/183 (0%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
AL+ + + A AL ++ E G YN +++ + + G + + ++ LK
Sbjct: 658 GALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
D+ TY + + A + + E++ + PD I Y+ + + K K
Sbjct: 718 DGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVK 777
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
+EM+K N + Y+++++ + G DE R+ +M+ + A + ++S
Sbjct: 778 VVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVS 837
Query: 228 SLV 230
V
Sbjct: 838 GQV 840
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 13/374 (3%)
Query: 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79
VA+ +LQ E F +++P+ RG LL + V +AE + KM E F
Sbjct: 219 VAKVHSLQKA--EIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTS 276
Query: 80 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 139
N +L LY + + +L ++N P TY+ + + D EK
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVET 336
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+K+ I+ D S L YI+ L E+A +KE+E + ++ SLL LY ++G
Sbjct: 337 IKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGD 396
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD--PRVP 257
D V R +S F N Y IS++ G+ ++ E +E + P +P
Sbjct: 397 SDNVRR-----LSRFVDQN-PRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMP 450
Query: 258 NI-LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316
L+ Y L R+ GI +TW L Y+K G++ K +A
Sbjct: 451 YFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRAT 510
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 375
K P A + ++GD+ E + + ++ A + + + Y ++L Y A
Sbjct: 511 KD-NKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKT 569
Query: 376 MPLIIVERMQKDNV 389
++ERM+ DNV
Sbjct: 570 PAYGMIERMKADNV 583
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 7/292 (2%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T +LLH + + +A +L+ M + G+ + YN +++ NG+L+ ++L E+
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEM 202
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
KK DVVTYN L A + ++ K I+PD ++++ L +++K
Sbjct: 203 EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNL 262
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
++A KEM + + N V Y+S+++ G + + + M S N Y +
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTL 322
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
IS K ++ ++ D N L+ Y +L +A + +V++ +
Sbjct: 323 ISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRV 382
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECF------KKAIGSVRKWVPDHRLITA 331
P T +L G G++E L F +K IG V + H L A
Sbjct: 383 TPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 8/213 (3%)
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+K P +VT+ L N A + + K+ +P+ + Y+TL K
Sbjct: 133 MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGEL 192
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
A L EMEK+ + V Y++LL+ G + R+ + MM + +T +
Sbjct: 193 NIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLV 281
I VK G ++A+ +Y E I + DP N+ + IN +L A+ ++ +
Sbjct: 253 IDVFVKQGNLDEAQELYKEM--IQSSVDPN--NVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
+KG P T+ L G+ K +++ ++ F++
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR 341
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 5/323 (1%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106
T + ++++ ++ K + + ++ E G + YN +++ Y S G +++ +++ +
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296
Query: 107 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
K SP V TYN + E A++ F E+ ++ + PD +Y +L K
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV 356
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ +M R + V +SS++SL+T G D+ L + + ++ YT +
Sbjct: 357 VETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 416
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
I + G A N+ +E D N +L R L A+ +N + + +
Sbjct: 417 IQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERAL 476
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWVPDHRLITAAYNKLEEQGDIDG 344
P T +L G+ K G ++ +E F+K +R V + + + K+ GDID
Sbjct: 477 FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKV---GDIDT 533
Query: 345 AEHLLVTLRNAGHVSTEIYNSLL 367
A+ + + + + T I S+L
Sbjct: 534 AKEIWADMVSKEILPTPISYSIL 556
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 3/297 (1%)
Query: 32 ENFFENLPDKMRGPD-TC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89
E F ++ + PD C S+++ + ++ +A + E G + + Y ++
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Query: 90 YISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148
Y G + + E L++ + DVVTYN L + A+K F E+ + + PD
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+ + L + K+ + A ++M+++ R + V Y++LL + +G D IW
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 209 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268
M+S Y+ ++++L G +A ++DE S + + N ++ Y
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599
Query: 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 325
ESF +++++G P ++ L +G++++ M K KK VPD
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN----GQLDKVPQM 102
T + +LH + K EA+ L +M+E + P ++ L + I G L ++
Sbjct: 447 TYNTILHGLCKRKMLGEADKLFNEMTE----RALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 103 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT-SLYI 160
Q++K K DVVTYN L D +TA++ + ++ +I P ISYS L +L
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562
Query: 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 220
K L E A EM + + + +S++ Y G + +KM+S +
Sbjct: 563 KGHLAE-AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621
Query: 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 278
Y +I V+ KA + + E G P V N +L + +NQ++ AE
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681
Query: 279 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328
+++ +G+ P +T+ + G++ + + + + + R + PD +
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ--RGFSPDDKF 729
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/361 (17%), Positives = 137/361 (37%), Gaps = 35/361 (9%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN- 109
L+ +YVQ +K EA + GF N ++ + G ++ + QE+ ++
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG 230
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
+V T N+ + A E ++++ + PD ++Y+TL S Y L E+A
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAF 290
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
+ M + Y+++++ G + ++ +M+ + Y ++
Sbjct: 291 ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 350
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
K G+ + E ++ + S D + +++ + L+ A ++N + G+ P
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 290 TTWELLTWGYLKKGQMEKVLE------------------------CFKKAIGSV------ 319
+ +L GY +KG + + C +K +G
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 320 ---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 375
R PD +T + + G++ A L ++ + YN+LL + K G
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 376 M 376
+
Sbjct: 531 I 531
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 32 ENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSE--CGFLKCPLPYNHML 87
E+F E + + PD S L++ +V+ + ++A L++KM E G + YN +L
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664
Query: 88 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 146
+ + Q+ + +L++ +++ +PD TY + SQ++ A + E+ +
Sbjct: 665 HGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFS 724
Query: 147 PD 148
PD
Sbjct: 725 PD 726
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 121/270 (44%), Gaps = 7/270 (2%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ----MLQ 104
+AL+ SY + K AEA+ +M G + Y +L ++ + + + +L
Sbjct: 178 TALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLD 237
Query: 105 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164
E K PD Y++ + + E A K F + + ++Y++L S +
Sbjct: 238 EKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK- 296
Query: 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224
+ + +M++ + + V+Y+ L+ Y ++E L ++++M+ + Y
Sbjct: 297 --EVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNI 354
Query: 225 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284
++ + G E+A+ ++ D +L+AY+N + +E AE F+ R+ G
Sbjct: 355 LLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDG 414
Query: 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKK 314
+P T+ L GY K +EK++E ++K
Sbjct: 415 FEPNIVTYGTLIKGYAKANDVEKMMEVYEK 444
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 131/309 (42%), Gaps = 19/309 (6%)
Query: 71 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130
SE FL Y + N NG ++V +L K ++P+V++Y + +
Sbjct: 137 FSEIDFLMLITAYGKLGNF---NGA-ERVLSVLS--KMGSTPNVISYTALMESYGRGGKC 190
Query: 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYI---KMELPEKAATTLKEMEKRTCRKNRVAY 187
AE F ++ + +P I+Y + ++ K + E+ TL + +K + ++ Y
Sbjct: 191 NNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMY 250
Query: 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247
++ +Y G ++ +++ M+ + Y ++S E K IYD+ +
Sbjct: 251 HMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQR 307
Query: 248 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307
D +L+ AY + E A S + ++ G++P + + +L + G +E+
Sbjct: 308 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 367
Query: 308 VLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 364
FK S+R + PD T + D++GAE ++ G + Y
Sbjct: 368 AKTVFK----SMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYG 423
Query: 365 SLLRTYAKA 373
+L++ YAKA
Sbjct: 424 TLIKGYAKA 432
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 112/283 (39%), Gaps = 42/283 (14%)
Query: 32 ENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 86
E FE L D+ + P +++ Y + +A + M G + + YN +
Sbjct: 229 EEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSL 288
Query: 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTY----------------------------- 117
++ S ++ K+ +Q + + PDVV+Y
Sbjct: 289 MSFETSYKEVSKIYDQMQ--RSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVR 346
Query: 118 ------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 171
N+ L A A E A+ F +++ +I PD SY+T+ S Y+ E A
Sbjct: 347 PTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKF 406
Query: 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231
K ++ N V Y +L+ Y ++++ +++KM K N T ++ + +
Sbjct: 407 FKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGR 466
Query: 232 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274
F A Y E ES D + N+LL+ +++LE A+
Sbjct: 467 CKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAK 509
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 25/303 (8%)
Query: 45 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PD T SAL+++ + K A L ++M + G + + + +++ + NG++D + +
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367
Query: 103 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
Q+ L K PD+V YN + D A + + + PD I+Y+TL + +
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
E A KEM++ +RV +S+L+ G + R ++M+ K +D
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESF 276
YT ++ + K G+ + + E +S D VP N+LL Q++ A+
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQS-----DGHVPSVVTYNVLLNGLCKLGQMKNADML 542
Query: 277 YNRLVTKGIKPCYTTWELLTWG----------YLKKGQMEKV--LECFKKAIGSVRKWVP 324
+ ++ G+ P T+ L G Y++K ++ V L +K + + +
Sbjct: 543 LDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKSIVNELDRASK 602
Query: 325 DHR 327
DHR
Sbjct: 603 DHR 605
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 137/331 (41%), Gaps = 4/331 (1%)
Query: 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 106
C LL ++ + ++ + GF +N ++N + G + ++ E+
Sbjct: 208 CGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEIT 267
Query: 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166
K++ P VV++N + + + + +++K++ PD +YS L + K +
Sbjct: 268 KRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMD 327
Query: 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226
A EM KR N V +++L+ ++ G D + ++KM+S + + Y ++
Sbjct: 328 GAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLV 387
Query: 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286
+ K G+ A NI D D L+ + +E A + GI+
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIE 447
Query: 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346
+ L G K+G++ ++ + + K PD T + ++GD
Sbjct: 448 LDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK--PDDVTYTMMMDAFCKKGDAQTGF 505
Query: 347 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 376
LL +++ GHV + + YN LL K G+M
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 126/269 (46%), Gaps = 1/269 (0%)
Query: 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 105
T S+L+ + K + ++ +M + + ++ ++++++ G+L + ++ E
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 106 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165
+ + +PD +TYN + +N A + F + +PD ++YS L + Y K +
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225
+ +E+ + N + Y++L+ + G + ++++M+S + Y +
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461
Query: 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285
+ L GE KA I+++ + T + NI++ N ++++ A S + L KG+
Sbjct: 462 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV 521
Query: 286 KPCYTTWELLTWGYLKKGQMEKVLECFKK 314
KP T+ ++ G KKG + + F+K
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRK 550
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 158/357 (44%), Gaps = 16/357 (4%)
Query: 45 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102
PDT S L++ + + +EA AL+++M E + + ++N G++ + +
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 103 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161
+ + + PD VTY L + A F ++++ I + YS + K
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
+ A + EME + + + V YSSL+ N G D+ ++ ++M+ +
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317
Query: 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281
++ +I VK G+ +A+ +Y+E + D N L+ + N L A ++ +V
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE---- 337
+KG +P T+ +L Y K +++ + F++ S + +P+ T YN L
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI--SSKGLIPN----TITYNTLVLGFC 431
Query: 338 EQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQM 391
+ G ++ A+ L + + G S Y LL G++ L I E+MQK + +
Sbjct: 432 QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 132/323 (40%), Gaps = 4/323 (1%)
Query: 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-T 110
L + + + K +A L E M + L P+ +N + + Q D V + ++ N
Sbjct: 42 LRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGI 101
Query: 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170
D+ T + + + A K +PD I++STL + + +A
Sbjct: 102 EHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVA 161
Query: 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230
+ M + R + V S+L++ G E L + +M+ + ++ Y V++ L
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 231 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290
K G A +++ + E + +I++ + + A S +N + KGIK
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 350
T+ L G G+ + + ++ IG R +PD +A + ++G + A+ L
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIG--RNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 351 TLRNAGHVSTEI-YNSLLRTYAK 372
+ G I YNSL+ + K
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCK 362
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 34 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
F + K P+T + L+ + Q+ K A+ L ++M G + Y +L+
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 92 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150
NG+L+K ++ ++++K+ + + YN+ + + + + A F L + PD +
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVV 526
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191
+Y+ + K +A ++M++ C + Y+ L+
Sbjct: 527 TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 127/276 (46%), Gaps = 5/276 (1%)
Query: 39 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98
PD++ T +L++ + + + ++A +L++KM E G+ + YN +++ +++
Sbjct: 153 PDRV----TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVND 208
Query: 99 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157
+E+ +K P+VVTY + + + A + ++ K KI P+ I+YS L
Sbjct: 209 AFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLD 268
Query: 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217
++K +A +EM + + + V YSSL++ DE +++ M+S
Sbjct: 269 AFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 328
Query: 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 277
+ Y +I+ K E ++ E + N L+ + ++ A+ F+
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 388
Query: 278 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 313
+++ GI P T+ +L G G++EK L F+
Sbjct: 389 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 156/356 (43%), Gaps = 13/356 (3%)
Query: 4 RRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCS--ALLHSYVQNKKS 61
R G+ V R RV+ A +L + E ++ PD + A++ S + K+
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK--------PDIVAYNAIIDSLCKTKRV 206
Query: 62 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLW 120
+A +++ G + Y ++N ++ + ++L + +KK +P+V+TY+
Sbjct: 207 NDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSAL 266
Query: 121 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180
L A A++ F E+ + IDPD ++YS+L + + ++A M + C
Sbjct: 267 LDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326
Query: 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240
+ V+Y++L++ + ++ ++++++M N Y +I + G+ +KA+
Sbjct: 327 LADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQE 386
Query: 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300
+ + + + D NILL + +LE A + + + + T+ + G
Sbjct: 387 FFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMC 446
Query: 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 356
K G++E+ F S++ PD T + L +G + E L ++ G
Sbjct: 447 KTGKVEEAWSLFCSL--SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 156/354 (44%), Gaps = 16/354 (4%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 109
LL + V+ KK +L +KM G +N ++N + Q+ +L + LK
Sbjct: 91 LLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLG 150
Query: 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169
PD VT + +N A ++ + PD ++Y+ + K + A
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
KE+E++ R N V Y++L++ N + R+ M+ N Y+ ++ +
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289
VK G+ +A+ +++E +S D + L+ ++++ A ++ +V+KG
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330
Query: 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGA 345
++ L G+ K ++E ++ F++ S R V + T YN L + GD+D A
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREM--SQRGLVSN----TVTYNTLIQGFFQAGDVDKA 384
Query: 346 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 395
+ + G +S +I YN LL G++ L+I E MQK + +D T
Sbjct: 385 QEFFSQMDFFG-ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVT 437
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 40/277 (14%)
Query: 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196
F ++ K++ P + ++ L S +K++ + + K+ME R + ++ +++ +
Sbjct: 73 FSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132
Query: 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256
L I KM+ L + + +++ + A ++ D+ I D
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA 192
Query: 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG------------------ 298
N ++ + ++ A F+ + KGI+P T+ L G
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 299 -----------------YLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQG 340
++K G++ + E F++ VR + PD ++ N L
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEM---VRMSIDPDIVTYSSLINGLCLHD 309
Query: 341 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 376
ID A + + + G ++ + YN+L+ + KA ++
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 129/268 (48%), Gaps = 7/268 (2%)
Query: 45 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVP 100
P+TC + L+ + +N A ++E+M G + P + Y+ +++ ++ + +
Sbjct: 194 PNTCIFNILVKHHCKNGDINFAFLVVEEMKRSG-ISYPNSITYSTLMDCLFAHSRSKEAV 252
Query: 101 QMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158
++ +++ K+ SPD VT+N+ + + E A+K +KK +P+ +YS L +
Sbjct: 253 ELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNG 312
Query: 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 218
+ K+ ++A T E++K + + V Y++L++ + G DE +++ +M + + +
Sbjct: 313 FCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRAD 372
Query: 219 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 278
Y ++ L G E+A + D+W S + I+L A +LE A F +
Sbjct: 373 TLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLS 432
Query: 279 RLVTKGIKPCYTTWELLTWGYLKKGQME 306
+ +GI P + TW L + G E
Sbjct: 433 VMSERGIWPHHATWNELVVRLCESGYTE 460
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 139/298 (46%), Gaps = 23/298 (7%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLE- 139
+N ++ + NG ++ +++E+K++ + P+ +TY+ + + + + A + F +
Sbjct: 199 FNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDM 258
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
+ K I PD ++++ + + + + E+A L M+K C N YS+L++ + +G
Sbjct: 259 ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGK 318
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
E + + ++ K++ YT +++ + GE ++A + E ++ D N+
Sbjct: 319 IQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNV 378
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319
+L + + E A ++ ++G+ ++ ++ G++EK ++ ++ S
Sbjct: 379 ILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFL--SVMSE 436
Query: 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 377
R P H A +N+ L+V L +G+ TEI +L + + G +P
Sbjct: 437 RGIWPHH----ATWNE------------LVVRLCESGY--TEIGVRVLIGFLRIGLIP 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,880,935
Number of Sequences: 539616
Number of extensions: 5805604
Number of successful extensions: 21846
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 17740
Number of HSP's gapped (non-prelim): 1902
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)