Query 014978
Match_columns 415
No_of_seqs 694 out of 1898
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 01:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.4E-61 7.3E-66 460.7 46.5 378 22-403 416-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-60 4.6E-65 455.2 46.7 390 19-414 377-777 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.5E-55 9.8E-60 425.3 38.5 378 20-414 230-612 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-54 3.1E-59 412.3 39.6 357 20-390 166-560 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-54 3.1E-59 412.3 36.3 371 20-406 95-508 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.5E-53 3.3E-58 414.6 38.8 370 21-406 130-503 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-27 8.9E-32 234.1 43.3 381 21-413 508-893 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-27 1.3E-31 233.0 43.2 360 18-387 437-799 (899)
9 PRK11788 tetratricopeptide rep 100.0 6.6E-25 1.4E-29 196.6 32.1 292 56-356 46-348 (389)
10 PRK11788 tetratricopeptide rep 99.9 2E-23 4.4E-28 187.0 34.1 304 84-394 39-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.2E-23 2.6E-28 181.6 29.7 365 18-395 122-491 (966)
12 PRK15174 Vi polysaccharide exp 99.9 3.2E-22 6.9E-27 187.9 40.7 333 16-358 46-384 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-22 1.4E-26 186.3 43.0 368 15-387 130-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 9.5E-21 2.1E-25 178.0 41.7 358 21-387 14-381 (656)
15 PRK11447 cellulose synthase su 99.9 2.5E-20 5.3E-25 186.9 43.2 357 17-387 274-700 (1157)
16 KOG4626 O-linked N-acetylgluco 99.9 2.2E-21 4.7E-26 167.8 26.8 350 15-376 153-506 (966)
17 PRK10049 pgaA outer membrane p 99.9 2.5E-19 5.5E-24 171.9 43.1 376 12-396 15-463 (765)
18 PRK11447 cellulose synthase su 99.9 8.5E-20 1.8E-24 183.1 41.2 366 13-390 304-744 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-19 1.5E-23 166.0 41.1 356 48-413 130-564 (615)
20 PRK14574 hmsH outer membrane p 99.9 1.3E-17 2.7E-22 157.6 41.4 374 14-396 36-486 (822)
21 PRK10049 pgaA outer membrane p 99.9 1.8E-17 4E-22 159.2 39.6 340 15-362 52-463 (765)
22 PRK09782 bacteriophage N4 rece 99.8 3.7E-15 7.9E-20 144.0 43.7 365 14-395 46-678 (987)
23 PRK10747 putative protoheme IX 99.8 3.9E-16 8.5E-21 138.7 32.8 298 16-353 88-388 (398)
24 TIGR00540 hemY_coli hemY prote 99.8 9.2E-16 2E-20 137.1 33.1 132 218-353 262-397 (409)
25 PRK09782 bacteriophage N4 rece 99.8 3.2E-15 6.9E-20 144.4 39.0 339 25-375 355-726 (987)
26 KOG4422 Uncharacterized conser 99.8 6.6E-15 1.4E-19 122.7 34.7 350 33-389 198-592 (625)
27 KOG2002 TPR-containing nuclear 99.8 1.4E-15 2.9E-20 138.8 32.0 363 14-384 309-706 (1018)
28 PRK14574 hmsH outer membrane p 99.8 7.9E-15 1.7E-19 138.9 37.7 361 17-385 73-511 (822)
29 KOG2076 RNA polymerase III tra 99.8 4E-15 8.8E-20 134.8 33.5 359 14-376 141-542 (895)
30 PF13429 TPR_15: Tetratricopep 99.8 4.4E-18 9.4E-23 144.7 14.0 222 88-315 52-274 (280)
31 KOG2003 TPR repeat-containing 99.8 1E-15 2.2E-20 128.6 26.8 351 18-376 282-710 (840)
32 PF13429 TPR_15: Tetratricopep 99.8 8.8E-18 1.9E-22 142.9 13.8 264 13-282 9-276 (280)
33 PRK10747 putative protoheme IX 99.8 1.9E-14 4E-19 128.1 33.5 279 93-383 97-386 (398)
34 TIGR00540 hemY_coli hemY prote 99.7 3E-14 6.5E-19 127.4 32.7 299 15-317 87-398 (409)
35 COG2956 Predicted N-acetylgluc 99.7 8.3E-14 1.8E-18 112.1 30.0 287 59-354 49-346 (389)
36 KOG1126 DNA-binding cell divis 99.7 5.1E-15 1.1E-19 130.1 24.0 290 95-395 334-626 (638)
37 KOG1155 Anaphase-promoting com 99.7 3E-13 6.6E-18 114.0 32.9 372 14-404 166-552 (559)
38 KOG2076 RNA polymerase III tra 99.7 2.2E-13 4.7E-18 123.8 34.0 326 55-385 149-510 (895)
39 KOG2002 TPR-containing nuclear 99.7 5.9E-14 1.3E-18 128.3 30.2 362 21-389 279-677 (1018)
40 KOG1126 DNA-binding cell divis 99.7 1.6E-14 3.5E-19 127.0 25.6 289 19-317 326-619 (638)
41 KOG0547 Translocase of outer m 99.7 1.4E-13 3.1E-18 116.7 28.9 363 17-386 120-565 (606)
42 COG3071 HemY Uncharacterized e 99.7 8.8E-13 1.9E-17 109.4 32.4 284 58-353 97-388 (400)
43 KOG0495 HAT repeat protein [RN 99.7 2E-12 4.4E-17 113.7 35.6 350 23-386 527-879 (913)
44 COG2956 Predicted N-acetylgluc 99.7 2.7E-13 5.9E-18 109.2 27.1 272 94-372 49-327 (389)
45 KOG4422 Uncharacterized conser 99.7 9.8E-13 2.1E-17 110.0 30.5 321 47-374 118-482 (625)
46 COG3071 HemY Uncharacterized e 99.7 2.7E-12 5.9E-17 106.5 32.0 291 19-317 91-389 (400)
47 KOG2003 TPR repeat-containing 99.6 2.2E-13 4.8E-18 114.7 24.4 374 23-406 248-708 (840)
48 KOG0495 HAT repeat protein [RN 99.6 7E-11 1.5E-15 104.2 38.0 350 17-376 411-769 (913)
49 KOG1915 Cell cycle control pro 99.6 3.1E-11 6.7E-16 102.5 34.4 355 23-388 152-537 (677)
50 PRK12370 invasion protein regu 99.6 5.3E-13 1.2E-17 124.0 26.2 265 43-317 254-534 (553)
51 KOG1155 Anaphase-promoting com 99.6 8.7E-12 1.9E-16 105.4 30.3 312 51-372 233-552 (559)
52 KOG1129 TPR repeat-containing 99.6 1.7E-13 3.7E-18 110.5 18.4 232 148-386 222-457 (478)
53 PF12569 NARP1: NMDA receptor- 99.6 2.8E-11 6E-16 108.9 33.9 294 17-318 9-334 (517)
54 KOG1173 Anaphase-promoting com 99.6 1.1E-11 2.4E-16 107.4 29.4 380 15-404 144-534 (611)
55 PRK12370 invasion protein regu 99.6 7E-12 1.5E-16 116.6 28.8 184 96-282 277-469 (553)
56 KOG1173 Anaphase-promoting com 99.6 1.9E-11 4.2E-16 105.9 28.7 281 46-335 245-531 (611)
57 TIGR02521 type_IV_pilW type IV 99.6 4.4E-12 9.4E-17 105.3 24.0 197 46-245 32-229 (234)
58 KOG1129 TPR repeat-containing 99.6 3.7E-13 8.1E-18 108.6 16.5 267 12-283 185-458 (478)
59 TIGR02521 type_IV_pilW type IV 99.5 6.4E-12 1.4E-16 104.2 24.1 200 114-317 31-231 (234)
60 KOG1915 Cell cycle control pro 99.5 1.4E-09 3E-14 92.7 34.3 350 23-386 84-499 (677)
61 KOG1174 Anaphase-promoting com 99.5 1.9E-10 4.2E-15 96.1 28.2 299 58-366 209-511 (564)
62 PF12569 NARP1: NMDA receptor- 99.5 1.6E-10 3.5E-15 104.1 29.1 293 52-354 11-333 (517)
63 KOG0547 Translocase of outer m 99.5 4.1E-10 8.9E-15 96.2 28.1 302 48-358 118-494 (606)
64 KOG2376 Signal recognition par 99.5 3.5E-09 7.7E-14 92.7 34.4 363 4-374 4-506 (652)
65 COG3063 PilF Tfp pilus assembl 99.4 2.8E-10 6.1E-15 87.9 22.9 200 46-248 36-236 (250)
66 COG3063 PilF Tfp pilus assembl 99.4 1.4E-10 3E-15 89.5 20.9 197 14-213 37-236 (250)
67 KOG1156 N-terminal acetyltrans 99.4 3.2E-09 7E-14 93.9 31.9 163 14-178 9-172 (700)
68 KOG1840 Kinesin light chain [C 99.4 1.8E-10 3.9E-15 102.6 24.2 245 110-354 195-478 (508)
69 KOG4318 Bicoid mRNA stability 99.4 5.2E-11 1.1E-15 108.4 20.9 253 67-341 12-286 (1088)
70 PRK11189 lipoprotein NlpI; Pro 99.4 4.5E-10 9.8E-15 95.8 24.1 228 58-294 39-275 (296)
71 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.3E-17 78.0 6.3 49 112-160 1-49 (50)
72 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.9E-17 77.3 6.7 50 147-196 1-50 (50)
73 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-09 2.7E-14 93.2 25.6 227 93-331 39-275 (296)
74 cd05804 StaR_like StaR_like; a 99.4 9.6E-09 2.1E-13 91.1 32.2 305 46-355 7-336 (355)
75 KOG4340 Uncharacterized conser 99.4 2.5E-10 5.4E-15 91.4 18.8 185 23-215 21-209 (459)
76 KOG1174 Anaphase-promoting com 99.4 4.6E-09 1E-13 88.1 26.8 295 15-317 199-499 (564)
77 KOG1840 Kinesin light chain [C 99.3 3.4E-10 7.4E-15 100.8 21.3 232 86-317 205-478 (508)
78 KOG4318 Bicoid mRNA stability 99.3 1.8E-10 3.9E-15 105.1 19.3 258 110-404 21-283 (1088)
79 cd05804 StaR_like StaR_like; a 99.3 1.4E-08 3.1E-13 90.0 31.1 298 17-317 11-335 (355)
80 KOG0548 Molecular co-chaperone 99.3 1.6E-08 3.5E-13 87.7 28.6 347 16-371 6-471 (539)
81 KOG2047 mRNA splicing factor [ 99.3 2.8E-07 6E-12 82.0 35.6 360 21-393 111-584 (835)
82 KOG1125 TPR repeat-containing 99.3 6.3E-10 1.4E-14 97.1 18.3 232 12-247 285-526 (579)
83 KOG2047 mRNA splicing factor [ 99.2 5.2E-07 1.1E-11 80.3 34.7 360 16-385 252-717 (835)
84 KOG3785 Uncharacterized conser 99.2 3.6E-07 7.7E-12 75.5 30.1 358 17-388 27-455 (557)
85 KOG1156 N-terminal acetyltrans 99.2 6.6E-07 1.4E-11 79.7 33.2 225 17-246 46-281 (700)
86 KOG4162 Predicted calmodulin-b 99.2 3E-07 6.5E-12 83.4 31.1 363 18-386 329-782 (799)
87 KOG4162 Predicted calmodulin-b 99.2 2.5E-06 5.3E-11 77.7 36.2 340 43-387 321-749 (799)
88 PF04733 Coatomer_E: Coatomer 99.2 2E-09 4.3E-14 90.5 15.8 251 90-358 11-268 (290)
89 PF04733 Coatomer_E: Coatomer 99.2 3.2E-09 7E-14 89.3 17.0 148 159-317 112-264 (290)
90 KOG0624 dsRNA-activated protei 99.1 6.4E-07 1.4E-11 73.8 28.8 295 15-317 41-369 (504)
91 PRK04841 transcriptional regul 99.1 4.7E-07 1E-11 90.7 34.7 355 20-376 349-747 (903)
92 KOG0624 dsRNA-activated protei 99.1 4.1E-07 8.9E-12 74.9 27.3 307 45-366 38-381 (504)
93 KOG1125 TPR repeat-containing 99.1 2.6E-08 5.6E-13 87.3 20.8 242 125-376 296-558 (579)
94 KOG2376 Signal recognition par 99.1 3.7E-06 8E-11 74.3 33.1 353 50-412 17-512 (652)
95 PRK04841 transcriptional regul 99.1 1.5E-06 3.2E-11 87.1 35.7 339 20-358 382-763 (903)
96 KOG4340 Uncharacterized conser 99.1 3.2E-07 6.9E-12 74.0 23.7 292 48-351 13-335 (459)
97 PLN02789 farnesyltranstransfer 99.1 9.4E-07 2E-11 75.6 28.1 212 84-300 41-266 (320)
98 PLN02789 farnesyltranstransfer 99.0 6.6E-07 1.4E-11 76.5 26.3 213 49-266 41-267 (320)
99 KOG3785 Uncharacterized conser 99.0 4.4E-06 9.4E-11 69.3 29.5 352 52-413 29-450 (557)
100 TIGR03302 OM_YfiO outer membra 99.0 4.4E-08 9.5E-13 81.2 18.3 181 14-214 35-233 (235)
101 KOG0548 Molecular co-chaperone 99.0 2.9E-06 6.2E-11 74.2 29.3 341 53-403 10-470 (539)
102 KOG1070 rRNA processing protei 99.0 6.6E-07 1.4E-11 86.3 26.4 203 111-317 1455-1662(1710)
103 KOG1128 Uncharacterized conser 99.0 8.5E-08 1.8E-12 86.4 19.5 236 81-337 399-634 (777)
104 PRK14720 transcript cleavage f 99.0 6.5E-07 1.4E-11 85.3 25.5 170 186-392 118-289 (906)
105 KOG1070 rRNA processing protei 99.0 1.1E-06 2.3E-11 84.9 26.8 238 130-376 1441-1687(1710)
106 TIGR03302 OM_YfiO outer membra 99.0 3.7E-07 8E-12 75.7 21.2 191 147-357 31-234 (235)
107 KOG1128 Uncharacterized conser 98.9 2.3E-07 5E-12 83.7 19.6 237 111-371 395-634 (777)
108 PRK10370 formate-dependent nit 98.9 4.8E-07 1.1E-11 72.0 18.7 149 52-214 23-174 (198)
109 COG5010 TadD Flp pilus assembl 98.9 1.6E-07 3.5E-12 74.5 15.2 165 44-212 66-230 (257)
110 KOG3081 Vesicle coat complex C 98.9 7.3E-06 1.6E-10 65.3 23.8 234 125-376 19-257 (299)
111 KOG0985 Vesicle coat protein c 98.8 2.2E-05 4.8E-10 73.9 29.4 261 42-349 981-1243(1666)
112 COG5010 TadD Flp pilus assembl 98.8 2.1E-06 4.5E-11 68.4 19.8 153 87-242 73-225 (257)
113 PRK15179 Vi polysaccharide bio 98.8 3.7E-07 8.1E-12 85.9 18.6 143 44-189 85-227 (694)
114 PRK10370 formate-dependent nit 98.8 9.3E-08 2E-12 76.1 12.6 161 19-193 23-186 (198)
115 KOG1914 mRNA cleavage and poly 98.8 6.9E-05 1.5E-09 65.9 35.7 365 14-384 21-498 (656)
116 PRK14720 transcript cleavage f 98.8 3.3E-06 7.2E-11 80.6 24.3 127 44-176 30-176 (906)
117 PRK15359 type III secretion sy 98.8 1.4E-07 3.1E-12 71.0 12.6 93 85-178 29-121 (144)
118 PF12854 PPR_1: PPR repeat 98.8 7.3E-09 1.6E-13 55.6 4.0 32 144-175 2-33 (34)
119 KOG2053 Mitochondrial inherita 98.8 0.00014 3.1E-09 67.8 39.1 78 329-406 439-521 (932)
120 KOG3617 WD40 and TPR repeat-co 98.8 2.6E-05 5.6E-10 72.0 27.1 135 24-174 740-883 (1416)
121 KOG3060 Uncharacterized conser 98.8 7E-06 1.5E-10 65.0 20.6 189 58-249 25-221 (289)
122 PRK15179 Vi polysaccharide bio 98.8 2.2E-06 4.9E-11 80.8 21.2 152 59-213 66-217 (694)
123 PRK15359 type III secretion sy 98.8 3.9E-07 8.6E-12 68.6 13.2 92 119-212 29-120 (144)
124 KOG0985 Vesicle coat protein c 98.7 0.00012 2.5E-09 69.4 30.9 269 80-386 1104-1380(1666)
125 KOG1127 TPR repeat-containing 98.7 1.6E-05 3.4E-10 74.8 25.3 351 25-385 471-877 (1238)
126 COG4783 Putative Zn-dependent 98.7 8.6E-07 1.9E-11 76.6 16.1 121 53-175 314-434 (484)
127 PF12854 PPR_1: PPR repeat 98.7 2.5E-08 5.5E-13 53.5 4.4 32 284-315 2-33 (34)
128 COG4783 Putative Zn-dependent 98.7 1.4E-05 3E-10 69.4 23.1 145 117-283 309-454 (484)
129 TIGR02552 LcrH_SycD type III s 98.7 2.1E-06 4.6E-11 64.2 15.1 100 111-212 14-113 (135)
130 KOG3081 Vesicle coat complex C 98.7 4.5E-05 9.7E-10 61.0 22.2 237 53-305 16-257 (299)
131 TIGR02552 LcrH_SycD type III s 98.7 6.2E-07 1.3E-11 67.2 11.7 95 48-143 20-114 (135)
132 KOG1127 TPR repeat-containing 98.6 4.3E-05 9.4E-10 71.9 24.5 348 19-375 499-899 (1238)
133 KOG3616 Selective LIM binding 98.6 4.5E-05 9.8E-10 69.6 23.0 165 126-315 744-908 (1636)
134 KOG1914 mRNA cleavage and poly 98.6 0.00041 8.8E-09 61.3 32.0 357 43-406 18-486 (656)
135 KOG3060 Uncharacterized conser 98.6 8.8E-05 1.9E-09 58.9 21.6 195 162-362 25-227 (289)
136 KOG3616 Selective LIM binding 98.5 0.00024 5.2E-09 65.1 24.2 196 18-244 712-907 (1636)
137 KOG3617 WD40 and TPR repeat-co 98.5 3.5E-05 7.7E-10 71.1 18.9 149 44-210 725-884 (1416)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.6E-06 2.1E-10 70.9 14.4 119 87-210 176-294 (395)
139 PF09976 TPR_21: Tetratricopep 98.4 1.4E-05 3.1E-10 60.4 13.6 21 122-142 56-76 (145)
140 KOG2053 Mitochondrial inherita 98.4 0.0022 4.9E-08 60.3 36.5 62 293-357 440-504 (932)
141 PF09976 TPR_21: Tetratricopep 98.3 1.2E-05 2.6E-10 60.8 11.7 123 49-175 16-144 (145)
142 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.6E-05 7.9E-10 56.0 13.9 108 256-363 4-113 (119)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.2E-05 2.7E-10 70.2 12.9 128 46-178 170-297 (395)
144 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 47.4 4.6 35 46-80 1-35 (35)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.3E-05 2.8E-10 58.4 10.2 95 16-112 6-108 (119)
146 PRK10866 outer membrane biogen 98.3 0.00013 2.7E-09 60.2 16.6 179 15-211 35-239 (243)
147 PF07079 DUF1347: Protein of u 98.2 0.0027 5.9E-08 55.1 32.0 145 13-161 7-179 (549)
148 PF13812 PPR_3: Pentatricopept 98.2 2.6E-06 5.6E-11 46.1 4.3 33 46-78 2-34 (34)
149 TIGR00756 PPR pentatricopeptid 98.2 2.5E-06 5.5E-11 46.5 4.0 33 116-148 2-34 (35)
150 PF13812 PPR_3: Pentatricopept 98.2 3.7E-06 8E-11 45.5 4.1 32 116-147 3-34 (34)
151 PF10037 MRP-S27: Mitochondria 98.2 5E-05 1.1E-09 66.8 13.1 124 144-267 61-186 (429)
152 cd00189 TPR Tetratricopeptide 98.2 4.3E-05 9.3E-10 52.8 10.5 19 121-139 41-59 (100)
153 cd00189 TPR Tetratricopeptide 98.1 2.9E-05 6.3E-10 53.7 9.5 95 48-143 3-97 (100)
154 KOG0550 Molecular chaperone (D 98.1 0.00086 1.9E-08 57.3 19.2 207 184-397 168-395 (486)
155 PLN03088 SGT1, suppressor of 98.1 2.9E-05 6.3E-10 68.1 11.0 104 15-119 5-109 (356)
156 PF10037 MRP-S27: Mitochondria 98.1 0.00011 2.3E-09 64.9 13.8 121 77-197 63-186 (429)
157 KOG0553 TPR repeat-containing 98.1 3.4E-05 7.4E-10 62.9 9.8 96 55-153 91-186 (304)
158 PRK10866 outer membrane biogen 98.1 0.0017 3.8E-08 53.6 20.1 180 154-353 37-239 (243)
159 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.4E-09 61.3 13.5 131 46-178 2-136 (280)
160 PF14938 SNAP: Soluble NSF att 98.0 0.0014 3.1E-08 55.7 18.9 23 259-281 160-182 (282)
161 PLN03088 SGT1, suppressor of 98.0 0.00019 4E-09 63.1 13.7 89 54-143 11-99 (356)
162 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3.1E-09 50.1 10.0 76 120-195 31-115 (120)
163 PRK15363 pathogenicity island 98.0 5.7E-05 1.2E-09 56.1 8.8 99 44-143 34-132 (157)
164 PRK15363 pathogenicity island 98.0 0.00016 3.5E-09 53.8 11.0 92 86-178 41-132 (157)
165 COG4700 Uncharacterized protei 98.0 0.0012 2.5E-08 50.2 15.3 157 49-209 60-218 (251)
166 PF13432 TPR_16: Tetratricopep 98.0 2.3E-05 4.9E-10 49.9 5.7 59 17-75 2-61 (65)
167 PRK02603 photosystem I assembl 98.0 0.00035 7.5E-09 54.6 13.5 85 222-307 38-124 (172)
168 KOG0550 Molecular chaperone (D 98.0 0.0049 1.1E-07 53.0 20.5 265 13-283 50-350 (486)
169 PRK02603 photosystem I assembl 98.0 0.00041 8.9E-09 54.2 13.4 92 44-135 34-127 (172)
170 PF08579 RPM2: Mitochondrial r 98.0 0.00019 4E-09 49.6 9.7 79 153-231 29-116 (120)
171 PF01535 PPR: PPR repeat; Int 98.0 1.5E-05 3.2E-10 42.0 3.7 31 46-76 1-31 (31)
172 COG3898 Uncharacterized membra 97.9 0.0097 2.1E-07 50.8 28.1 284 58-355 97-392 (531)
173 PF05843 Suf: Suppressor of fo 97.9 0.0003 6.5E-09 59.6 13.1 128 83-212 4-135 (280)
174 PF12895 Apc3: Anaphase-promot 97.9 1.5E-05 3.1E-10 53.9 4.0 78 94-173 3-82 (84)
175 PRK10153 DNA-binding transcrip 97.9 0.0011 2.5E-08 60.9 17.3 61 185-247 421-481 (517)
176 PRK10153 DNA-binding transcrip 97.9 0.0011 2.3E-08 61.1 17.0 64 148-213 419-482 (517)
177 PF12895 Apc3: Anaphase-promot 97.9 3.9E-05 8.5E-10 51.7 6.0 47 163-209 3-50 (84)
178 CHL00033 ycf3 photosystem I as 97.9 0.0011 2.4E-08 51.5 14.9 81 114-195 35-117 (168)
179 PF01535 PPR: PPR repeat; Int 97.9 2E-05 4.2E-10 41.5 3.3 25 152-176 3-27 (31)
180 CHL00033 ycf3 photosystem I as 97.9 0.00028 6.1E-09 54.9 11.0 81 45-125 35-117 (168)
181 COG4235 Cytochrome c biogenesi 97.9 0.00049 1.1E-08 56.6 12.5 114 77-193 153-269 (287)
182 PF14938 SNAP: Soluble NSF att 97.8 0.007 1.5E-07 51.6 19.9 160 154-315 80-263 (282)
183 PF12688 TPR_5: Tetratrico pep 97.8 0.0011 2.4E-08 47.6 12.6 87 53-139 9-100 (120)
184 PF14559 TPR_19: Tetratricopep 97.8 5.2E-05 1.1E-09 48.7 5.0 50 127-177 4-53 (68)
185 KOG0553 TPR repeat-containing 97.8 0.00034 7.3E-09 57.3 10.5 176 28-218 31-220 (304)
186 COG4105 ComL DNA uptake lipopr 97.8 0.01 2.2E-07 48.1 18.5 81 12-92 34-118 (254)
187 PF06239 ECSIT: Evolutionarily 97.8 0.00082 1.8E-08 52.6 12.0 51 111-161 44-99 (228)
188 PF12688 TPR_5: Tetratrico pep 97.8 0.0031 6.8E-08 45.3 14.2 109 260-371 7-117 (120)
189 COG3898 Uncharacterized membra 97.8 0.02 4.2E-07 49.1 27.8 292 13-317 85-391 (531)
190 PF13525 YfiO: Outer membrane 97.8 0.0026 5.5E-08 51.2 15.2 61 14-74 7-71 (203)
191 COG4235 Cytochrome c biogenesi 97.7 0.0027 5.8E-08 52.5 15.0 117 107-227 149-268 (287)
192 KOG2796 Uncharacterized conser 97.7 0.006 1.3E-07 49.2 16.2 128 154-282 182-314 (366)
193 PF03704 BTAD: Bacterial trans 97.7 0.0013 2.8E-08 49.8 12.5 74 328-401 64-144 (146)
194 PF13432 TPR_16: Tetratricopep 97.7 0.00027 5.9E-09 44.8 7.4 58 297-357 5-62 (65)
195 PF14559 TPR_19: Tetratricopep 97.7 0.0002 4.4E-09 45.9 6.4 55 301-358 3-57 (68)
196 PRK10803 tol-pal system protei 97.7 0.0019 4E-08 53.9 13.3 102 257-360 146-251 (263)
197 KOG1130 Predicted G-alpha GTPa 97.7 0.0011 2.5E-08 56.6 12.0 134 221-354 197-343 (639)
198 PF13414 TPR_11: TPR repeat; P 97.6 0.00036 7.8E-09 44.9 7.2 65 289-356 3-68 (69)
199 KOG2796 Uncharacterized conser 97.6 0.022 4.8E-07 46.1 18.1 132 116-248 179-315 (366)
200 PF13525 YfiO: Outer membrane 97.6 0.012 2.5E-07 47.4 17.3 59 156-214 12-72 (203)
201 COG4700 Uncharacterized protei 97.6 0.017 3.7E-07 44.1 18.9 133 216-352 86-219 (251)
202 PF06239 ECSIT: Evolutionarily 97.6 0.0014 3E-08 51.4 10.7 51 146-196 44-99 (228)
203 PF13414 TPR_11: TPR repeat; P 97.6 0.00056 1.2E-08 44.0 7.3 58 152-210 6-64 (69)
204 KOG1130 Predicted G-alpha GTPa 97.6 0.0022 4.8E-08 54.9 12.3 265 17-281 22-342 (639)
205 PRK10803 tol-pal system protei 97.5 0.0025 5.5E-08 53.0 11.9 99 115-215 144-248 (263)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.068 1.5E-06 46.9 30.6 128 255-386 398-530 (660)
207 PF13512 TPR_18: Tetratricopep 97.4 0.0017 3.8E-08 47.5 9.1 83 12-94 10-96 (142)
208 PF03704 BTAD: Bacterial trans 97.3 0.014 3.1E-07 44.1 13.7 57 84-140 66-122 (146)
209 PF13281 DUF4071: Domain of un 97.3 0.094 2E-06 45.7 20.0 35 324-358 303-337 (374)
210 PF04840 Vps16_C: Vps16, C-ter 97.3 0.089 1.9E-06 45.4 27.6 109 221-351 179-287 (319)
211 PF07079 DUF1347: Protein of u 97.3 0.11 2.4E-06 45.7 29.6 349 13-369 80-539 (549)
212 KOG1538 Uncharacterized conser 97.3 0.059 1.3E-06 49.4 18.3 90 255-357 748-848 (1081)
213 PRK15331 chaperone protein Sic 97.3 0.002 4.4E-08 48.3 7.9 93 50-143 42-134 (165)
214 PF13371 TPR_9: Tetratricopept 97.3 0.0015 3.2E-08 42.6 6.6 51 91-141 6-56 (73)
215 COG1729 Uncharacterized protei 97.3 0.0033 7.1E-08 51.3 9.6 100 15-115 144-250 (262)
216 KOG2041 WD40 repeat protein [G 97.2 0.17 3.7E-06 47.1 24.2 51 12-69 734-784 (1189)
217 COG3118 Thioredoxin domain-con 97.2 0.039 8.4E-07 45.7 14.9 125 16-141 138-263 (304)
218 PF13371 TPR_9: Tetratricopept 97.2 0.0049 1.1E-07 40.1 8.3 60 298-360 4-63 (73)
219 PF13281 DUF4071: Domain of un 97.1 0.15 3.3E-06 44.5 21.1 163 153-317 145-333 (374)
220 PF13424 TPR_12: Tetratricopep 97.1 0.0038 8.2E-08 41.2 7.2 65 290-354 6-74 (78)
221 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.049 1.1E-06 47.7 15.2 129 47-177 399-530 (660)
222 PF12921 ATP13: Mitochondrial 97.0 0.019 4E-07 41.8 10.5 100 254-375 2-103 (126)
223 PF04840 Vps16_C: Vps16, C-ter 96.9 0.23 4.9E-06 42.9 27.2 82 258-351 181-262 (319)
224 COG3118 Thioredoxin domain-con 96.9 0.19 4.1E-06 41.8 16.5 52 124-176 144-195 (304)
225 KOG1585 Protein required for f 96.9 0.15 3.2E-06 41.1 15.3 23 86-108 37-59 (308)
226 PF08631 SPO22: Meiosis protei 96.9 0.22 4.8E-06 42.3 22.4 121 23-143 4-150 (278)
227 KOG2041 WD40 repeat protein [G 96.9 0.38 8.3E-06 44.9 25.1 332 20-376 671-1073(1189)
228 PRK15331 chaperone protein Sic 96.8 0.017 3.6E-07 43.5 9.3 88 89-177 46-133 (165)
229 PF13424 TPR_12: Tetratricopep 96.8 0.0044 9.4E-08 40.9 5.8 60 116-175 7-72 (78)
230 PF13428 TPR_14: Tetratricopep 96.8 0.0055 1.2E-07 35.1 5.3 42 327-368 2-43 (44)
231 KOG1258 mRNA processing protei 96.8 0.43 9.2E-06 43.7 32.7 335 29-376 62-491 (577)
232 COG0457 NrfG FOG: TPR repeat [ 96.7 0.25 5.3E-06 40.5 23.4 223 59-283 37-265 (291)
233 KOG0543 FKBP-type peptidyl-pro 96.7 0.018 3.9E-07 49.7 9.8 141 17-177 213-354 (397)
234 COG1729 Uncharacterized protei 96.7 0.079 1.7E-06 43.5 12.9 104 256-360 144-249 (262)
235 KOG0543 FKBP-type peptidyl-pro 96.7 0.032 7E-07 48.2 11.1 94 290-386 258-354 (397)
236 PF12921 ATP13: Mitochondrial 96.6 0.037 8.1E-07 40.2 9.8 98 218-336 1-98 (126)
237 KOG4555 TPR repeat-containing 96.6 0.024 5.1E-07 40.5 8.3 93 15-107 46-142 (175)
238 KOG1585 Protein required for f 96.6 0.17 3.8E-06 40.7 13.5 207 45-277 31-250 (308)
239 KOG2610 Uncharacterized conser 96.6 0.19 4.1E-06 42.4 14.4 115 58-174 116-234 (491)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.044 9.6E-07 48.5 11.2 59 47-107 77-139 (453)
241 KOG2610 Uncharacterized conser 96.5 0.25 5.4E-06 41.8 14.8 154 90-244 113-272 (491)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.12 2.6E-06 45.9 13.6 67 110-178 71-141 (453)
243 PF10300 DUF3808: Protein of u 96.5 0.33 7.1E-06 44.7 17.3 176 169-354 177-375 (468)
244 PF04053 Coatomer_WDAD: Coatom 96.5 0.12 2.5E-06 46.9 14.1 23 221-243 349-371 (443)
245 PF10300 DUF3808: Protein of u 96.5 0.22 4.7E-06 45.8 16.0 178 63-247 175-375 (468)
246 smart00299 CLH Clathrin heavy 96.5 0.23 5E-06 37.1 16.0 125 223-371 11-136 (140)
247 KOG1538 Uncharacterized conser 96.5 0.13 2.8E-06 47.3 13.8 182 18-212 638-845 (1081)
248 PF04053 Coatomer_WDAD: Coatom 96.4 0.04 8.6E-07 49.8 10.8 156 21-209 270-427 (443)
249 COG4105 ComL DNA uptake lipopr 96.4 0.4 8.6E-06 39.2 20.7 181 159-358 44-236 (254)
250 COG4649 Uncharacterized protei 96.4 0.25 5.3E-06 37.5 12.6 59 15-73 61-122 (221)
251 KOG1941 Acetylcholine receptor 96.4 0.15 3.2E-06 43.6 12.7 233 14-246 8-273 (518)
252 KOG1941 Acetylcholine receptor 96.3 0.26 5.7E-06 42.1 14.0 227 90-317 16-274 (518)
253 COG4785 NlpI Lipoprotein NlpI, 96.3 0.36 7.9E-06 38.2 13.8 92 15-109 68-162 (297)
254 PF08631 SPO22: Meiosis protei 96.3 0.58 1.3E-05 39.8 27.0 225 125-353 4-273 (278)
255 PRK11906 transcriptional regul 96.3 0.22 4.8E-06 44.4 14.0 158 15-174 258-432 (458)
256 KOG4555 TPR repeat-containing 96.2 0.21 4.5E-06 35.9 10.9 92 88-179 51-145 (175)
257 KOG2280 Vacuolar assembly/sort 96.2 1.1 2.5E-05 42.3 24.7 306 49-376 441-786 (829)
258 smart00299 CLH Clathrin heavy 96.2 0.36 7.8E-06 36.1 14.5 20 225-244 75-94 (140)
259 PF09205 DUF1955: Domain of un 96.1 0.31 6.7E-06 35.1 11.7 63 117-180 89-151 (161)
260 PF04184 ST7: ST7 protein; In 96.1 0.6 1.3E-05 41.9 15.8 57 259-315 264-321 (539)
261 PRK11906 transcriptional regul 96.1 1 2.2E-05 40.4 18.6 114 97-212 275-400 (458)
262 PF13170 DUF4003: Protein of u 96.1 0.8 1.7E-05 39.1 18.9 130 61-192 78-225 (297)
263 PF13512 TPR_18: Tetratricopep 96.1 0.13 2.8E-06 38.0 9.7 54 90-143 20-76 (142)
264 PF13428 TPR_14: Tetratricopep 96.0 0.014 2.9E-07 33.4 3.6 25 49-73 5-29 (44)
265 KOG3941 Intermediate in Toll s 95.9 0.087 1.9E-06 43.2 9.1 90 111-200 64-174 (406)
266 PRK11619 lytic murein transgly 95.6 2.4 5.1E-05 40.9 28.3 319 13-353 34-373 (644)
267 COG3629 DnrI DNA-binding trans 95.6 0.19 4.2E-06 41.9 10.1 76 327-402 154-236 (280)
268 COG0457 NrfG FOG: TPR repeat [ 95.5 1.1 2.3E-05 36.6 28.6 204 150-358 60-268 (291)
269 KOG1920 IkappaB kinase complex 95.5 3.1 6.6E-05 41.8 23.9 130 12-142 677-820 (1265)
270 KOG2280 Vacuolar assembly/sort 95.5 2.4 5.1E-05 40.3 25.5 304 21-351 446-795 (829)
271 PF10602 RPN7: 26S proteasome 95.2 0.95 2.1E-05 35.4 12.5 95 151-245 38-139 (177)
272 PF09205 DUF1955: Domain of un 95.0 0.94 2E-05 32.8 13.1 140 195-358 13-152 (161)
273 COG3629 DnrI DNA-binding trans 95.0 0.25 5.5E-06 41.3 9.0 81 113-194 152-237 (280)
274 KOG3941 Intermediate in Toll s 94.9 0.35 7.6E-06 39.9 9.3 99 147-245 65-185 (406)
275 PF09613 HrpB1_HrpK: Bacterial 94.8 1.3 2.8E-05 33.5 11.9 17 160-176 55-71 (160)
276 KOG2114 Vacuolar assembly/sort 94.7 1.3 2.8E-05 42.5 13.7 181 83-281 337-517 (933)
277 TIGR02561 HrpB1_HrpK type III 94.7 1.3 2.8E-05 32.9 11.9 23 336-358 54-76 (153)
278 PF13431 TPR_17: Tetratricopep 94.3 0.055 1.2E-06 28.8 2.6 29 106-134 5-33 (34)
279 KOG2114 Vacuolar assembly/sort 94.3 2.5 5.5E-05 40.6 14.6 179 116-315 336-516 (933)
280 COG2909 MalT ATP-dependent tra 94.3 5.7 0.00012 38.8 27.5 297 14-314 349-684 (894)
281 PF09613 HrpB1_HrpK: Bacterial 94.2 1.8 4E-05 32.7 12.9 42 336-377 54-95 (160)
282 PF10602 RPN7: 26S proteasome 94.2 1.1 2.4E-05 35.0 10.7 95 115-211 37-140 (177)
283 COG4785 NlpI Lipoprotein NlpI, 94.1 2.5 5.4E-05 33.7 15.3 172 103-285 88-268 (297)
284 KOG0890 Protein kinase of the 94.0 11 0.00024 41.2 26.7 149 18-173 1389-1542(2382)
285 KOG1920 IkappaB kinase complex 94.0 7.7 0.00017 39.2 17.6 26 48-73 793-820 (1265)
286 PF13431 TPR_17: Tetratricopep 93.9 0.026 5.7E-07 30.0 0.8 27 39-65 6-33 (34)
287 KOG4570 Uncharacterized conser 93.9 1.5 3.2E-05 37.0 11.0 98 218-317 63-163 (418)
288 KOG1550 Extracellular protein 93.9 6 0.00013 37.5 23.9 280 61-358 228-541 (552)
289 PF13176 TPR_7: Tetratricopept 93.8 0.13 2.8E-06 27.8 3.5 23 187-209 2-24 (36)
290 PF13176 TPR_7: Tetratricopept 93.8 0.16 3.5E-06 27.3 3.9 26 47-72 1-26 (36)
291 COG3947 Response regulator con 93.7 3.6 7.8E-05 34.5 13.3 60 152-212 282-341 (361)
292 PF04184 ST7: ST7 protein; In 93.6 5.5 0.00012 36.2 17.9 62 222-283 262-324 (539)
293 PF02259 FAT: FAT domain; Int 93.4 5.3 0.00011 35.3 23.6 65 183-247 145-212 (352)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 93.4 1.1 2.3E-05 30.4 7.7 34 320-353 36-69 (103)
295 PF02259 FAT: FAT domain; Int 93.3 5.5 0.00012 35.2 20.8 55 86-143 4-58 (352)
296 PF00515 TPR_1: Tetratricopept 93.0 0.31 6.7E-06 25.6 4.2 26 292-317 4-29 (34)
297 PF11207 DUF2989: Protein of u 93.0 1.6 3.4E-05 34.5 9.4 81 264-346 117-198 (203)
298 PF02284 COX5A: Cytochrome c o 92.9 2.1 4.5E-05 29.4 9.4 59 308-368 29-87 (108)
299 PF07719 TPR_2: Tetratricopept 92.9 0.42 9.2E-06 25.0 4.7 28 329-356 4-31 (34)
300 COG4649 Uncharacterized protei 92.9 3.4 7.3E-05 31.7 13.7 123 125-247 69-195 (221)
301 PF13174 TPR_6: Tetratricopept 92.8 0.12 2.7E-06 26.9 2.4 30 15-44 3-32 (33)
302 PF00515 TPR_1: Tetratricopept 92.7 0.46 9.9E-06 25.0 4.6 32 327-358 2-33 (34)
303 COG1747 Uncharacterized N-term 92.4 8.6 0.00019 35.1 24.9 180 183-371 65-250 (711)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.8 3.9E-05 29.4 7.6 49 269-317 22-70 (103)
305 PF13170 DUF4003: Protein of u 92.2 6.8 0.00015 33.6 20.3 128 131-260 79-223 (297)
306 KOG1258 mRNA processing protei 92.1 10 0.00022 35.3 29.2 316 17-340 84-489 (577)
307 PF07035 Mic1: Colon cancer-as 91.9 4.6 0.0001 31.0 13.2 32 67-98 16-47 (167)
308 COG3947 Response regulator con 91.7 7.2 0.00016 32.8 16.9 72 328-399 281-359 (361)
309 KOG4234 TPR repeat-containing 91.6 1.5 3.2E-05 34.4 7.6 89 54-143 104-197 (271)
310 PF02284 COX5A: Cytochrome c o 91.6 1.5 3.3E-05 30.0 6.7 46 272-317 28-73 (108)
311 PF07719 TPR_2: Tetratricopept 91.5 0.6 1.3E-05 24.4 4.2 27 291-317 3-29 (34)
312 KOG4570 Uncharacterized conser 91.1 2.6 5.6E-05 35.6 9.0 104 73-178 57-164 (418)
313 PRK15180 Vi polysaccharide bio 91.0 3.6 7.7E-05 37.0 10.3 124 122-249 297-421 (831)
314 KOG2471 TPR repeat-containing 90.8 13 0.00027 33.9 15.7 305 57-373 29-382 (696)
315 KOG0276 Vesicle coat complex C 90.5 4.1 8.8E-05 37.8 10.4 151 22-209 596-746 (794)
316 KOG1550 Extracellular protein 90.3 17 0.00037 34.6 24.9 273 27-317 227-537 (552)
317 KOG4648 Uncharacterized conser 90.2 2.5 5.4E-05 36.2 8.4 55 226-281 104-158 (536)
318 PF00244 14-3-3: 14-3-3 protei 90.2 7.9 0.00017 31.9 11.3 51 305-355 142-198 (236)
319 PF11207 DUF2989: Protein of u 90.2 3.9 8.5E-05 32.3 8.9 72 166-238 123-197 (203)
320 KOG4234 TPR repeat-containing 90.1 8 0.00017 30.6 10.8 94 264-362 105-204 (271)
321 KOG4648 Uncharacterized conser 89.9 1.4 3E-05 37.7 6.7 56 18-73 103-159 (536)
322 PF13174 TPR_6: Tetratricopept 89.7 0.85 1.8E-05 23.5 3.7 27 331-357 5-31 (33)
323 TIGR02561 HrpB1_HrpK type III 89.6 7 0.00015 29.2 11.4 17 126-142 56-72 (153)
324 PF13374 TPR_10: Tetratricopep 89.5 1.1 2.4E-05 24.7 4.4 26 151-176 4-29 (42)
325 PF07035 Mic1: Colon cancer-as 89.4 8.2 0.00018 29.7 16.1 134 134-281 14-147 (167)
326 PF13374 TPR_10: Tetratricopep 89.3 1 2.3E-05 24.8 4.2 29 114-142 2-30 (42)
327 PF07575 Nucleopor_Nup85: Nup8 88.8 23 0.00049 33.9 18.1 61 254-316 405-465 (566)
328 COG4455 ImpE Protein of avirul 88.4 5.6 0.00012 31.8 8.5 77 221-298 3-81 (273)
329 PF13181 TPR_8: Tetratricopept 88.3 1.3 2.8E-05 23.1 3.8 26 329-354 4-29 (34)
330 COG1747 Uncharacterized N-term 87.9 22 0.00047 32.7 20.7 165 44-214 65-235 (711)
331 PF10579 Rapsyn_N: Rapsyn N-te 87.9 1.9 4.2E-05 28.0 4.8 55 14-68 8-66 (80)
332 PF00637 Clathrin: Region in C 87.8 0.24 5.1E-06 37.2 0.9 50 124-173 17-66 (143)
333 KOG0276 Vesicle coat complex C 87.8 11 0.00025 35.1 11.3 44 161-210 649-692 (794)
334 PF13181 TPR_8: Tetratricopept 87.8 1.2 2.7E-05 23.2 3.6 27 291-317 3-29 (34)
335 KOG4507 Uncharacterized conser 87.6 9.2 0.0002 35.6 10.5 86 92-178 619-705 (886)
336 COG4455 ImpE Protein of avirul 87.1 4.9 0.00011 32.2 7.6 74 49-123 5-81 (273)
337 PRK15180 Vi polysaccharide bio 86.8 24 0.00053 32.1 25.5 88 20-108 331-419 (831)
338 KOG1586 Protein required for f 86.6 16 0.00035 29.8 18.3 56 198-253 128-188 (288)
339 PF06552 TOM20_plant: Plant sp 86.4 4.5 9.7E-05 31.3 6.9 42 130-179 96-137 (186)
340 PF13929 mRNA_stabil: mRNA sta 86.4 19 0.00041 30.4 14.7 61 182-242 200-261 (292)
341 PF10579 Rapsyn_N: Rapsyn N-te 86.3 1.6 3.5E-05 28.3 3.9 47 301-348 18-65 (80)
342 PF07721 TPR_4: Tetratricopept 86.1 1.3 2.8E-05 21.6 2.8 19 50-68 6-24 (26)
343 PF06552 TOM20_plant: Plant sp 85.9 9.2 0.0002 29.7 8.3 72 132-213 53-136 (186)
344 PF00637 Clathrin: Region in C 85.8 0.59 1.3E-05 35.1 2.1 83 155-244 13-95 (143)
345 PF07163 Pex26: Pex26 protein; 85.7 14 0.0003 31.0 9.7 86 155-242 89-181 (309)
346 KOG4507 Uncharacterized conser 85.3 7.2 0.00016 36.2 8.8 104 267-373 620-723 (886)
347 PF09477 Type_III_YscG: Bacter 85.3 9.4 0.0002 26.6 7.3 80 59-144 20-99 (116)
348 PF10345 Cohesin_load: Cohesin 85.1 38 0.00083 32.8 29.7 194 44-247 29-253 (608)
349 KOG0890 Protein kinase of the 84.8 72 0.0016 35.7 24.0 152 50-208 1388-1542(2382)
350 PF10345 Cohesin_load: Cohesin 84.6 40 0.00087 32.6 31.0 184 28-212 37-253 (608)
351 PF13934 ELYS: Nuclear pore co 84.4 15 0.00032 30.1 9.7 104 47-160 78-183 (226)
352 KOG4077 Cytochrome c oxidase, 83.9 12 0.00025 27.1 7.5 43 311-355 71-113 (149)
353 TIGR03504 FimV_Cterm FimV C-te 83.6 3.1 6.7E-05 23.6 3.8 24 120-143 5-28 (44)
354 PF08424 NRDE-2: NRDE-2, neces 83.6 30 0.00064 30.3 18.0 139 110-250 15-185 (321)
355 PRK09687 putative lyase; Provi 83.2 28 0.0006 29.7 29.2 222 111-357 34-265 (280)
356 smart00386 HAT HAT (Half-A-TPR 83.2 3.5 7.6E-05 20.9 4.0 30 340-369 1-30 (33)
357 KOG2396 HAT (Half-A-TPR) repea 83.2 37 0.00081 31.2 20.6 240 101-354 303-558 (568)
358 KOG2396 HAT (Half-A-TPR) repea 83.0 38 0.00082 31.1 28.9 90 30-120 89-180 (568)
359 KOG2063 Vacuolar assembly/sort 83.0 55 0.0012 32.9 25.7 188 186-373 506-745 (877)
360 TIGR03504 FimV_Cterm FimV C-te 82.7 3.2 7E-05 23.6 3.7 20 192-211 7-26 (44)
361 COG2909 MalT ATP-dependent tra 82.4 55 0.0012 32.5 26.6 227 125-351 426-684 (894)
362 PHA02875 ankyrin repeat protei 82.3 31 0.00067 31.4 12.1 210 20-253 7-229 (413)
363 PF07163 Pex26: Pex26 protein; 81.8 26 0.00056 29.5 9.8 87 121-207 90-181 (309)
364 TIGR02508 type_III_yscG type I 81.7 9.9 0.00021 26.1 6.2 14 91-104 50-63 (115)
365 KOG2422 Uncharacterized conser 81.5 47 0.001 31.1 15.3 160 197-357 251-450 (665)
366 COG2976 Uncharacterized protei 81.2 25 0.00054 27.8 14.0 88 228-317 98-187 (207)
367 KOG1464 COP9 signalosome, subu 80.8 32 0.00069 28.7 20.3 50 127-176 40-92 (440)
368 KOG2066 Vacuolar assembly/sort 80.3 61 0.0013 31.7 24.7 145 22-176 366-532 (846)
369 PRK09687 putative lyase; Provi 80.0 37 0.0008 29.0 28.9 49 43-95 35-83 (280)
370 PF13929 mRNA_stabil: mRNA sta 79.7 37 0.0008 28.8 22.0 98 182-279 162-263 (292)
371 KOG4521 Nuclear pore complex, 79.4 49 0.0011 34.0 12.3 178 12-205 920-1123(1480)
372 COG2976 Uncharacterized protei 79.4 29 0.00063 27.4 14.9 126 221-358 56-191 (207)
373 PF08424 NRDE-2: NRDE-2, neces 79.0 44 0.00095 29.2 16.8 118 239-358 51-186 (321)
374 PF14853 Fis1_TPR_C: Fis1 C-te 78.9 3.6 7.9E-05 24.5 3.2 31 15-45 4-34 (53)
375 smart00028 TPR Tetratricopepti 78.9 5.8 0.00013 19.4 4.0 25 292-316 4-28 (34)
376 KOG4077 Cytochrome c oxidase, 77.5 24 0.00053 25.5 7.4 46 272-317 67-112 (149)
377 PF11846 DUF3366: Domain of un 77.4 17 0.00036 28.9 7.7 36 322-357 140-175 (193)
378 KOG2471 TPR repeat-containing 77.1 61 0.0013 29.8 12.8 307 16-338 21-381 (696)
379 TIGR02508 type_III_yscG type I 76.4 22 0.00049 24.5 7.6 52 122-179 47-98 (115)
380 PHA02875 ankyrin repeat protei 76.0 34 0.00073 31.2 10.3 138 123-276 8-154 (413)
381 PRK11619 lytic murein transgly 75.8 82 0.0018 30.8 36.5 312 22-351 109-464 (644)
382 PF03745 DUF309: Domain of unk 75.5 17 0.00036 22.6 5.9 53 16-68 3-62 (62)
383 KOG1308 Hsp70-interacting prot 74.6 2.6 5.7E-05 36.1 2.4 96 90-187 124-220 (377)
384 PF11846 DUF3366: Domain of un 74.3 7.2 0.00016 31.0 4.9 65 47-111 110-175 (193)
385 KOG4642 Chaperone-dependent E3 74.3 48 0.001 27.3 10.7 6 287-292 228-233 (284)
386 COG0735 Fur Fe2+/Zn2+ uptake r 74.3 22 0.00049 26.7 7.2 59 348-406 8-69 (145)
387 PF10366 Vps39_1: Vacuolar sor 73.4 29 0.00064 24.5 7.2 27 186-212 41-67 (108)
388 KOG1586 Protein required for f 73.4 50 0.0011 27.1 15.4 17 24-40 26-42 (288)
389 PF14689 SPOB_a: Sensor_kinase 73.3 12 0.00027 23.1 4.7 21 155-175 29-49 (62)
390 PF14853 Fis1_TPR_C: Fis1 C-te 72.8 13 0.00028 22.2 4.5 29 332-360 7-35 (53)
391 KOG0991 Replication factor C, 72.7 52 0.0011 27.0 10.3 155 224-389 135-301 (333)
392 KOG4642 Chaperone-dependent E3 72.7 53 0.0011 27.1 11.2 112 93-206 23-139 (284)
393 PF09670 Cas_Cas02710: CRISPR- 71.9 76 0.0016 28.6 11.2 56 53-109 139-198 (379)
394 PF12862 Apc5: Anaphase-promot 71.6 23 0.00051 24.1 6.3 21 52-72 48-68 (94)
395 KOG0991 Replication factor C, 71.5 56 0.0012 26.9 12.6 155 189-358 135-302 (333)
396 PF04097 Nic96: Nup93/Nic96; 70.9 1.1E+02 0.0023 29.8 18.4 43 50-93 116-158 (613)
397 COG0735 Fur Fe2+/Zn2+ uptake r 70.8 30 0.00064 26.0 7.1 60 173-233 10-69 (145)
398 PF07575 Nucleopor_Nup85: Nup8 70.5 40 0.00086 32.3 9.6 96 113-212 371-466 (566)
399 KOG4814 Uncharacterized conser 70.3 1E+02 0.0023 29.5 17.0 98 11-109 353-457 (872)
400 COG5108 RPO41 Mitochondrial DN 69.8 33 0.0007 32.8 8.2 48 294-341 33-80 (1117)
401 KOG1308 Hsp70-interacting prot 69.4 3.7 8E-05 35.2 2.2 96 124-222 124-220 (377)
402 KOG0686 COP9 signalosome, subu 68.3 90 0.002 28.0 12.4 174 46-227 151-352 (466)
403 PRK10941 hypothetical protein; 67.6 54 0.0012 27.8 8.7 75 84-158 185-260 (269)
404 PF14689 SPOB_a: Sensor_kinase 67.5 17 0.00037 22.5 4.4 23 294-316 28-50 (62)
405 KOG0376 Serine-threonine phosp 67.4 21 0.00045 32.4 6.4 104 17-122 9-113 (476)
406 COG4259 Uncharacterized protei 67.3 38 0.00082 23.3 6.6 58 61-118 53-110 (121)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 67.1 35 0.00077 24.9 6.7 45 96-140 79-125 (126)
408 PRK10941 hypothetical protein; 66.4 64 0.0014 27.3 8.9 78 117-195 184-262 (269)
409 PF04762 IKI3: IKI3 family; I 66.2 1.2E+02 0.0026 31.2 12.2 213 12-244 694-926 (928)
410 PF09477 Type_III_YscG: Bacter 66.1 43 0.00094 23.5 8.1 30 181-212 68-97 (116)
411 PF09454 Vps23_core: Vps23 cor 65.1 20 0.00042 22.5 4.3 49 324-372 6-54 (65)
412 PF09986 DUF2225: Uncharacteri 65.1 74 0.0016 25.9 9.5 69 291-359 120-198 (214)
413 KOG2659 LisH motif-containing 65.1 75 0.0016 25.9 9.8 99 215-315 22-129 (228)
414 KOG2908 26S proteasome regulat 64.8 60 0.0013 28.2 8.2 50 93-142 88-143 (380)
415 PRK10564 maltose regulon perip 64.7 18 0.00038 30.8 5.2 37 116-152 259-295 (303)
416 PRK11639 zinc uptake transcrip 64.2 47 0.001 25.8 7.3 53 354-406 19-74 (169)
417 PF14561 TPR_20: Tetratricopep 64.1 42 0.00092 22.7 8.9 56 109-164 17-73 (90)
418 COG0790 FOG: TPR repeat, SEL1 64.0 93 0.002 26.6 21.9 150 57-214 53-221 (292)
419 PF12862 Apc5: Anaphase-promot 63.9 43 0.00094 22.8 7.9 21 334-354 49-69 (94)
420 cd08819 CARD_MDA5_2 Caspase ac 63.8 42 0.00091 22.5 7.0 34 232-270 49-82 (88)
421 PRK12798 chemotaxis protein; R 63.6 1.2E+02 0.0025 27.5 19.1 49 198-246 126-175 (421)
422 PF11848 DUF3368: Domain of un 62.4 28 0.00062 20.1 5.1 32 337-368 13-45 (48)
423 PF11663 Toxin_YhaV: Toxin wit 62.3 8.8 0.00019 28.0 2.7 28 198-227 109-136 (140)
424 KOG0686 COP9 signalosome, subu 62.0 1.2E+02 0.0026 27.3 13.3 63 81-143 151-216 (466)
425 KOG0889 Histone acetyltransfer 61.6 3.5E+02 0.0075 32.4 18.5 155 14-177 2484-2660(3550)
426 PF10366 Vps39_1: Vacuolar sor 61.4 54 0.0012 23.1 6.5 27 82-108 41-67 (108)
427 PRK13342 recombination factor 59.7 1.4E+02 0.0031 27.3 16.3 54 162-215 243-301 (413)
428 KOG0376 Serine-threonine phosp 59.2 17 0.00038 32.9 4.5 107 52-162 11-118 (476)
429 PF13762 MNE1: Mitochondrial s 59.2 74 0.0016 23.9 9.8 25 276-300 102-126 (145)
430 PRK10564 maltose regulon perip 57.7 30 0.00065 29.5 5.4 41 146-186 253-294 (303)
431 KOG2908 26S proteasome regulat 57.6 1.3E+02 0.0029 26.3 10.1 85 119-203 80-176 (380)
432 PF11838 ERAP1_C: ERAP1-like C 57.5 1.3E+02 0.0028 26.2 21.0 110 130-243 146-261 (324)
433 PRK09462 fur ferric uptake reg 56.9 78 0.0017 23.8 7.2 55 352-406 8-66 (148)
434 cd00280 TRFH Telomeric Repeat 55.1 1E+02 0.0022 24.3 11.7 20 123-142 120-139 (200)
435 PRK09857 putative transposase; 54.6 1.2E+02 0.0027 26.0 8.8 65 118-183 210-274 (292)
436 PF01475 FUR: Ferric uptake re 54.3 28 0.00061 25.0 4.3 46 361-406 8-56 (120)
437 KOG4567 GTPase-activating prot 53.7 1.2E+02 0.0026 26.2 8.0 42 101-142 264-306 (370)
438 smart00777 Mad3_BUB1_I Mad3/BU 53.5 59 0.0013 23.7 5.7 41 133-173 82-123 (125)
439 PF11848 DUF3368: Domain of un 53.3 43 0.00094 19.4 5.1 25 163-187 16-40 (48)
440 PRK09462 fur ferric uptake reg 52.9 97 0.0021 23.3 7.3 59 175-234 8-67 (148)
441 PRK11639 zinc uptake transcrip 52.3 1.1E+02 0.0024 23.7 7.6 59 176-235 18-76 (169)
442 PF04910 Tcf25: Transcriptiona 52.1 1.8E+02 0.0038 26.1 17.7 165 188-357 14-224 (360)
443 KOG1839 Uncharacterized protei 52.1 2.1E+02 0.0046 30.1 10.9 151 90-240 942-1120(1236)
444 COG5108 RPO41 Mitochondrial DN 52.0 2.4E+02 0.0051 27.5 11.1 47 224-270 33-81 (1117)
445 KOG1839 Uncharacterized protei 51.2 1.7E+02 0.0037 30.7 10.2 125 18-142 938-1085(1236)
446 COG5187 RPN7 26S proteasome re 51.2 1.6E+02 0.0034 25.2 13.1 22 151-172 117-138 (412)
447 PF11817 Foie-gras_1: Foie gra 50.9 63 0.0014 27.0 6.4 79 131-211 162-245 (247)
448 PF11817 Foie-gras_1: Foie gra 50.8 1E+02 0.0022 25.8 7.6 56 294-349 183-241 (247)
449 PF03745 DUF309: Domain of unk 50.8 58 0.0013 20.2 5.1 47 195-241 10-61 (62)
450 COG5187 RPN7 26S proteasome re 50.8 1.6E+02 0.0035 25.2 12.2 114 114-229 115-237 (412)
451 KOG2062 26S proteasome regulat 50.2 2.6E+02 0.0057 27.6 20.2 26 222-247 213-238 (929)
452 PRK09857 putative transposase; 49.9 1.7E+02 0.0037 25.2 9.2 65 222-287 209-273 (292)
453 COG0790 FOG: TPR repeat, SEL1 49.5 1.7E+02 0.0036 25.0 23.7 17 199-215 128-144 (292)
454 KOG1464 COP9 signalosome, subu 49.3 1.6E+02 0.0035 24.8 22.4 270 74-353 20-330 (440)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 49.3 1E+02 0.0022 22.5 9.2 43 132-174 81-124 (126)
456 PF04090 RNA_pol_I_TF: RNA pol 49.0 1.4E+02 0.003 24.0 9.1 62 46-108 42-104 (199)
457 PF09670 Cas_Cas02710: CRISPR- 48.7 2.1E+02 0.0045 25.9 12.3 57 191-248 138-198 (379)
458 smart00101 14_3_3 14-3-3 homol 46.9 1.7E+02 0.0037 24.4 16.6 51 305-355 144-200 (244)
459 KOG3364 Membrane protein invol 46.7 1.2E+02 0.0026 22.6 9.7 71 287-359 30-104 (149)
460 KOG4521 Nuclear pore complex, 46.3 3.8E+02 0.0082 28.2 13.3 122 114-242 983-1125(1480)
461 COG5191 Uncharacterized conser 46.3 67 0.0014 27.6 5.6 25 338-362 154-178 (435)
462 KOG0687 26S proteasome regulat 45.9 2.1E+02 0.0045 25.1 16.5 96 150-247 105-209 (393)
463 KOG2063 Vacuolar assembly/sort 45.6 3.5E+02 0.0076 27.6 17.0 116 116-231 506-638 (877)
464 PF09454 Vps23_core: Vps23 cor 45.6 76 0.0016 19.9 5.1 48 112-160 6-53 (65)
465 PF13934 ELYS: Nuclear pore co 45.6 1.7E+02 0.0037 24.0 14.0 20 260-279 114-133 (226)
466 PRK14700 recombination factor 44.5 2.1E+02 0.0045 24.7 14.5 44 190-233 129-175 (300)
467 cd00280 TRFH Telomeric Repeat 44.0 1.6E+02 0.0035 23.3 11.0 22 156-177 118-139 (200)
468 KOG2582 COP9 signalosome, subu 43.6 2.4E+02 0.0051 25.1 13.7 119 59-177 73-211 (422)
469 PF10255 Paf67: RNA polymerase 43.5 2.6E+02 0.0056 25.5 12.5 218 78-295 70-318 (404)
470 KOG4567 GTPase-activating prot 43.3 2.2E+02 0.0048 24.7 10.2 43 240-282 264-306 (370)
471 KOG3807 Predicted membrane pro 42.9 2.3E+02 0.005 24.8 13.6 56 260-317 281-339 (556)
472 PF15297 CKAP2_C: Cytoskeleton 42.9 1.7E+02 0.0037 25.8 7.6 64 97-160 120-186 (353)
473 COG5159 RPN6 26S proteasome re 42.0 2.2E+02 0.0048 24.3 16.6 214 51-264 9-308 (421)
474 PF10475 DUF2450: Protein of u 41.8 2.3E+02 0.0049 24.4 10.6 52 155-212 104-155 (291)
475 PF00244 14-3-3: 14-3-3 protei 41.0 2.1E+02 0.0045 23.7 12.5 59 119-177 6-65 (236)
476 cd07153 Fur_like Ferric uptake 40.8 72 0.0016 22.6 4.7 44 191-234 7-50 (116)
477 PRK12798 chemotaxis protein; R 39.8 2.9E+02 0.0064 25.1 20.4 151 162-317 125-285 (421)
478 COG4003 Uncharacterized protei 39.8 1.1E+02 0.0024 20.2 5.4 39 332-370 37-75 (98)
479 COG4976 Predicted methyltransf 39.7 60 0.0013 26.6 4.3 53 91-143 6-58 (287)
480 PF14929 TAF1_subA: TAF RNA Po 39.6 3.5E+02 0.0076 25.9 15.0 99 92-196 321-423 (547)
481 COG4976 Predicted methyltransf 39.3 68 0.0015 26.3 4.5 53 264-317 5-57 (287)
482 PF09868 DUF2095: Uncharacteri 39.2 1.4E+02 0.003 21.2 5.5 25 120-144 67-91 (128)
483 PF09868 DUF2095: Uncharacteri 38.4 1.4E+02 0.0031 21.2 5.8 43 332-374 67-109 (128)
484 cd08310 Death_NFkB-like Death 38.4 42 0.00091 21.6 2.7 47 364-415 25-72 (72)
485 KOG3364 Membrane protein invol 38.4 1.7E+02 0.0036 21.9 8.4 66 78-143 30-100 (149)
486 PF14669 Asp_Glu_race_2: Putat 38.4 2.1E+02 0.0045 22.9 14.7 28 323-350 178-205 (233)
487 PRK13184 pknD serine/threonine 38.3 4.8E+02 0.01 27.1 23.6 275 88-371 483-849 (932)
488 PF02847 MA3: MA3 domain; Int 38.2 1.4E+02 0.003 21.0 5.9 19 156-174 9-27 (113)
489 COG2178 Predicted RNA-binding 37.6 2.1E+02 0.0046 22.8 8.8 107 62-177 20-149 (204)
490 PF11663 Toxin_YhaV: Toxin wit 37.4 26 0.00056 25.7 1.8 32 57-90 107-138 (140)
491 cd08819 CARD_MDA5_2 Caspase ac 37.4 1.3E+02 0.0028 20.3 7.3 37 196-237 48-84 (88)
492 KOG2297 Predicted translation 37.2 2.8E+02 0.006 24.1 17.5 236 112-386 109-347 (412)
493 PF02184 HAT: HAT (Half-A-TPR) 36.9 42 0.00091 17.5 2.0 24 60-85 2-25 (32)
494 KOG1114 Tripeptidyl peptidase 36.7 4.9E+02 0.011 26.8 14.4 29 253-281 1230-1258(1304)
495 PF12926 MOZART2: Mitotic-spin 36.2 1.3E+02 0.0029 20.1 8.1 42 170-211 29-70 (88)
496 PF13762 MNE1: Mitochondrial s 35.1 2E+02 0.0043 21.7 12.0 48 289-338 79-127 (145)
497 KOG2300 Uncharacterized conser 35.0 3.8E+02 0.0083 25.0 30.6 325 23-356 58-475 (629)
498 cd08791 DED_DEDD2 Death Effect 34.9 93 0.002 21.5 4.0 56 341-396 48-104 (106)
499 cd07153 Fur_like Ferric uptake 34.6 1.2E+02 0.0027 21.4 5.1 33 166-198 17-49 (116)
500 PRK13341 recombination factor 34.6 4.9E+02 0.011 26.1 17.2 149 129-282 169-360 (725)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-61 Score=460.69 Aligned_cols=378 Identities=16% Similarity=0.222 Sum_probs=358.1
Q ss_pred HHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 22 QAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
+.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 416 ~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4566777777777777766 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--c
Q 014978 102 MLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK--R 178 (415)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 178 (415)
+|++|.+. ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999877 88999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .++.||..+|+.||.+|++
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~--~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS--IKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 014978 339 QGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKITS 403 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~l~~~~ 403 (415)
.|++++|.++|++|.+.|.. +..+|+.++.+|++.|++ +..++..|.+.|+.||..+++.|..++
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999887 568999999999999998 699999999999999999997555543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-60 Score=455.18 Aligned_cols=390 Identities=13% Similarity=0.201 Sum_probs=370.3
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCC---CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 19 RVAQAQALQTRARENFFENLPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
...+.+.|++++|+++|+.|...+ ++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 346678999999999999999864 4566778899999999999999999999975 899999999999999999
Q ss_pred cCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++.|.++|+.|.+. ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999887 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH--cccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+ .++.||..+|+.|
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k--~G~~pd~~tynsL 690 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK--QGIKLGTVSYSSL 690 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-c
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-V 407 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~ 407 (415)
+.+|++.|++++|.++|++|.+.+.. +..+||.||.+|++.|++ |..+|++|...|+.||..|| .++.+|++.+ .
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998877 568999999999999999 69999999999999999999 6888888877 6
Q ss_pred ccccccc
Q 014978 408 SEVSSIF 414 (415)
Q Consensus 408 ~~~~~~~ 414 (415)
+++.++|
T Consensus 771 e~A~~l~ 777 (1060)
T PLN03218 771 DVGLDLL 777 (1060)
T ss_pred HHHHHHH
Confidence 6666554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-55 Score=425.26 Aligned_cols=378 Identities=19% Similarity=0.150 Sum_probs=315.7
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
..+++.|++++|.++|+.|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 367899999999999999987 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 100 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+++..+.+. ..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999887 89999999999999999999999999999986 478899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
|+.||..+|+.++.+|++.|+++.|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999885 46788999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+ .++.+|..+++.|+.+|++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~--~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR--TGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH--hCCCccceechHHHHHHHH
Confidence 999999999999999999999986 4889999998888888888888777777777776 5666655555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-cccccccc
Q 014978 339 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-VSEVSSIF 414 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~~~~~~~~ 414 (415)
.|++++|.++|+.+ .++..+||++|.+|++.|+. |..+|++|.+.|+.||..|| .+|.+|++.+ ++++.++|
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 55555555555554 23445555555555555555 35555555555555555555 3455555544 44444433
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=412.29 Aligned_cols=357 Identities=17% Similarity=0.258 Sum_probs=216.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH-------------
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM------------- 86 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 86 (415)
..+++.|++++|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 367899999999999999987 89999999999999999999999999999888777766655554
Q ss_pred ----------------------HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 87 ----------------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 87 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+|++.|++++|.++|+.|. ++|..+||.++.+|++.|++++|.++|++|.+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 455555555555555555553 3455555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHH
Q 014978 145 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224 (415)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (415)
+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555552 244555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCCCHhHHHHHHHHHHhcC
Q 014978 225 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKPCYTTWELLTWGYLKKG 303 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~ 303 (415)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 5555555555555555555555555555555555555555555555555555555543 355555555555555555555
Q ss_pred CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHH
Q 014978 304 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIV 381 (415)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~ 381 (415)
++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+|.+..+|+.|+++|++.|++ |.+++
T Consensus 477 ~~~eA~~~~~~~-----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA-----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 555555555442 34455555555555555555555555555555554444445555555555555555 35555
Q ss_pred HHHHhCCCC
Q 014978 382 ERMQKDNVQ 390 (415)
Q Consensus 382 ~~m~~~~~~ 390 (415)
+.|++.|++
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 555555543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=412.28 Aligned_cols=371 Identities=17% Similarity=0.228 Sum_probs=336.0
Q ss_pred HHHHHhhhhHHHHHHHHhcCcC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 20 VAQAQALQTRARENFFENLPDK---MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
..+.+.|++++|+++|+.|... .|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 3568899999999999999764 3688999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--------------------------
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------------------------- 150 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------------------------- 150 (415)
++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 175 ~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 175 IDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999996 5799999999999999999999999999998777666544
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh
Q 014978 151 ---------SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221 (415)
Q Consensus 151 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (415)
+|+.|+++|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55778888999999999999999986 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
|+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 688999999999999
Q ss_pred cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCC--c
Q 014978 302 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVS-TEIYNSLLRTYAKAGKM--P 377 (415)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~--a 377 (415)
.|+.++|.++|++|.+ .++.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.| ..+|+.++.+|++.|++ |
T Consensus 404 ~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999998 79999999999999999999999999999999986 46654 48899999999999998 4
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 378 LIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 378 ~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
.++++ +.++.|+..+| .++.+|...+
T Consensus 482 ~~~~~---~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 482 YAMIR---RAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHH---HCCCCCCHHHHHHHHHHHHHcC
Confidence 55554 45789999999 5888887766
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-53 Score=414.59 Aligned_cols=370 Identities=14% Similarity=0.123 Sum_probs=347.0
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 21 AQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 46899999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 101 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
+++..+.+. ..||..+|+.++.+|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999998877 89999999999999999999999999999986 4688999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
+.||..||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 578899999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ .++.|+..+++.|+.+|++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~--~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER--KGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
|++++|.++|++|.+. +..+|+.++.+|++.|+. |..+|.+|.. +++||..|+ .+|.+|++.+
T Consensus 438 g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 438 KCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred CCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 9999999999998653 456799999999999998 6889999975 699999999 6888888776
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.1e-27 Score=234.10 Aligned_cols=381 Identities=15% Similarity=0.088 Sum_probs=228.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.+...|++++|.+.|+.+....| +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 33444455555555554444333 33444455555555555555555555554433 23344444555555555556666
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+++.+.+..+.+..+|..++.++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+..
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666655555555555566666666666666666666666665543 3344455556666666666666666666665542
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
+.+..++..++..+...|++++|..+++.+.+..+ .+...+..+...+...|++++|...++.+.... |+..++..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 33455566666666666666666666666655532 244555666666666777777777777666543 33355566
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
++.++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+ ..+++...+..+...+...
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 6667777777777777777766643 23556666777777777777777777777766 2345566677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-ccccccc
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~~~~~~~ 413 (415)
|+ .+|+..++++.+..+.++..+..+...+.+.|++ |...++.+.+.+-. +..++ .+...+...+ .+++.++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 77 6677777777777666666777777777777777 56777777776543 55555 4555555555 5455443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.9e-27 Score=232.99 Aligned_cols=360 Identities=13% Similarity=0.089 Sum_probs=243.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+..+.+.|++++|+++++.+....| ++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 34455666777777777776665544 55667777777777777777777777776653 33455566666777777777
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|.+.|+++.+..|.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..|.+.|++++|.++++.+.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777766666677777777777777777777777777776653 4455566667777777777777777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
+.. +.+...|..+..++...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..+
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 552 45566777777777777777777777777766532 244556667777777777777777777776653 335566
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.. ..|+..++..++.++
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK----RAPSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCchHHHHHHHHH
Confidence 6677777777777777777777776654 23555666666677777777777777777665 234445666666667
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.+.|++++|.+.++.+.+..+.+...+..+...|.+.|++ |...|+.+.+.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777777777777766666666677777777777766 45566666554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=6.6e-25 Score=196.64 Aligned_cols=292 Identities=15% Similarity=0.084 Sum_probs=131.3
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC----HhHHHHHHHHHHhcCCHH
Q 014978 56 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD----VVTYNLWLAACASQNDKE 131 (415)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 131 (415)
...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+....+.+ ..++..++..+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 1223334444444444444444444444443321000 123444444444555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN----RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544431 23334444455555555555555555554444321111 112333444444555555555555
Q ss_pred HHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 287 (415)
+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 555443211 233444444555555555555555555544322211233444555555555555555555555443 23
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcC
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 356 (415)
+...+..++..+.+.|++++|..+++++++ ..|+..++..++..+.. .|+.+++..+++++.+.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 334444555555555555555555555544 23555555544444432 235555555555555433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2e-23 Score=187.04 Aligned_cols=304 Identities=15% Similarity=0.123 Sum_probs=253.4
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYI 160 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~ 160 (415)
......+...|++++|+..|.++.+..|.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445667889999999999999988888888999999999999999999999999987642222 246788999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh----hhHHHHHHHHHhcCChH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND----AEYTCVISSLVKLGEFE 236 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 236 (415)
+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998763 456788999999999999999999999999887544322 23556777888999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
+|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 335667888899999999999999999999976433234578889999999999999999999998
Q ss_pred hcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---cCCC--cHHHHHHHHhCCCCC
Q 014978 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK---AGKM--PLIIVERMQKDNVQM 391 (415)
Q Consensus 317 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~--a~~~~~~m~~~~~~p 391 (415)
+ ..|+...+..++..+.+.|++++|..+++++.+..|. ...++.++..+.. .|+. +..+++.|.+.+++|
T Consensus 277 ~----~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 E----EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred H----hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 7 3577777788999999999999999999999987554 4467777777765 3455 588899999988888
Q ss_pred CHH
Q 014978 392 DAE 394 (415)
Q Consensus 392 ~~~ 394 (415)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 876
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-23 Score=181.57 Aligned_cols=365 Identities=16% Similarity=0.176 Sum_probs=314.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYISNGQ 95 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 95 (415)
.+..+-..|++++|+.+++.+.+..| ..++|..+..++...|+.+.|.+.|.+.++.+ |+.... ..+...+...|+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc
Confidence 56677889999999999999999877 57899999999999999999999999998864 654443 445566667899
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+++|...|.+..+..|.-...|..|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.+++|...|.+
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 999999999988877777889999999999999999999999999987 444 45899999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 254 (415)
..... +.....+..+...|...|..+-|+..|++.++..+. -...|+.+..++-..|++.+|.+.+++..... +...
T Consensus 278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 88762 345677888999999999999999999999985432 34589999999999999999999999998875 3367
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAA 332 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l 332 (415)
...+.|...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|+..++++++ +.|+. ..++.+
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fAda~~Nm 428 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchHHHHHHhc
Confidence 78889999999999999999999999874 454 35788999999999999999999999987 77875 689999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t 395 (415)
...|-..|+.+.|.+.+.+.+..+|.-.++++.|...|-.+|+...++-..-....++||...
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999999999998888899999999999999996666555555667777554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=3.2e-22 Score=187.89 Aligned_cols=333 Identities=11% Similarity=0.026 Sum_probs=276.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
....+.+.+.|++++|+.+++......| ++..+..++.+....|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3445677899999999999999888877 56777888888889999999999999999875 446677888889999999
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++++|...++++.+..|.+...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999887664 2333344333 347889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH----HHHHHHHHHhccC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK----AENIYDEWESISG 250 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 250 (415)
+.+....++...+..+..++...|++++|+..++++.+..+. +...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 887643344455566678889999999999999999987543 56678889999999999986 899999998865
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHH
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLI 329 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~ 329 (415)
+.+...+..+...+...|++++|...+++...... .+...+..+...+.+.|++++|+..++.+.. ..|+. ..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~----~~P~~~~~~ 355 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAR----EKGVTSKWN 355 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccchHHH
Confidence 34677889999999999999999999999998642 2456777888999999999999999999987 34554 334
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 330 TAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..+..++...|++++|...|+++.+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 44567789999999999999999988776
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.7e-22 Score=186.30 Aligned_cols=368 Identities=13% Similarity=0.043 Sum_probs=289.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
....|..+.+.|++++|+..|+.+....|++..|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4466788899999999999999999988998999999999999999999999999999875 345678888999999999
Q ss_pred CcCcHHHHHHHHhhc------------------------------CCCCHhHHHHHHHHH--------------------
Q 014978 95 QLDKVPQMLQELKKN------------------------------TSPDVVTYNLWLAAC-------------------- 124 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~-------------------- 124 (415)
++++|+..|..+... .+++...+..+...+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998766543211 111111111111100
Q ss_pred ----------------HhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 125 ----------------ASQNDKETAEKAFLELKKTK-I-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 125 ----------------~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +.+...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 12357889999999998765 2 3345678888999999999999999999998863 334668
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888999999999999999999999886433 56788889999999999999999999998875 3366778888999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCC---CHH-HHHHHHHHHHHcCCh
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP---DHR-LITAAYNKLEEQGDI 342 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p---~~~-~~~~l~~~~~~~g~~ 342 (415)
.|++++|...|++.++.. +.+...++.+...+...|++++|+..|++++.......+ +.. .+...+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999999998753 225678899999999999999999999999873211111 111 122222334457999
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 343 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
++|..++++....++.+..++..+...+.+.|++ |...|++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998888888999999999999999 56667766554
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=9.5e-21 Score=177.99 Aligned_cols=358 Identities=11% Similarity=0.068 Sum_probs=292.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 21 AQAQALQTRARENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+.+..+|+.-.-+|...++... +......++..+.+.|++++|..+++...... +-+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 45677888888888888777633 23344566778889999999999999998864 33455666777788889999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|...|+++....|.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999873 4566788899999999999999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 663 2334444343 3478899999999999998876544445555666778899999999999999998875 446778
Q ss_pred HHHHHHHHHhcCcHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 257 PNILLAAYINRNQLEM----AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..+...+...|++++ |...|++..+..+ .+...+..+...+...|++++|+..+++++.. -+.+...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 8889999999999986 8999999988642 25678899999999999999999999999882 23345677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
..++...|++++|...++++...++.+...+..+..++...|+. |...+....+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999998887666666677889999998 46667766543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.5e-20 Score=186.89 Aligned_cols=357 Identities=14% Similarity=0.099 Sum_probs=238.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---cHH--------
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYN-------- 84 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~-------- 84 (415)
..+..+...|++++|+..|+.+....| ++.++..+...+.+.|++++|+..|++..+.. |+.. .|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhH
Confidence 346778889999999999999988877 77899999999999999999999999998764 3321 121
Q ss_pred ----HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 85 ----HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 85 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
.....+.+.|++++|+..|+++.+..|.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 224467789999999999999998888888999999999999999999999999998763 334445555555443
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 161 KMELPEKAATTLKEMEKRTCR--------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
.++.++|..+++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...+.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23445555444433211000 00112233334444445555555555554443222 233344444445555
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHH--------------------------------------------HHHHHHHhcC
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPN--------------------------------------------ILLAAYINRN 268 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~g 268 (415)
|++++|...++++.+.. +.+...+. .+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555444322 11222211 2334455556
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
+.++|..+++. .+++...+..+...+.+.|++++|+..|+++++ .-+.+...+..++..+...|++++|+..
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666665551 123455666777888888888888888888887 2344567788888888888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 349 LVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
++.+.+..+.+...+..+..++...|++ |.++++.....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8888877777777778888888888888 56677776654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.2e-21 Score=167.78 Aligned_cols=350 Identities=16% Similarity=0.142 Sum_probs=299.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+.++...|+.+.|.+.|..+.+..|+.... +-+...+-..|+.++|...|.+..+.. +-=...|..|...+-.+
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQ 231 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhc
Confidence 4566778899999999999999999987765443 344555566899999999999998864 22367899999999999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
|+...|+..|++..+..|.-...|-.|...|...+.++.|...|.+..... +.....+..+...|...|.++.|+..|+
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHH
Confidence 999999999999998878888999999999999999999999999988763 4456688889999999999999999999
Q ss_pred HHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 174 EMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 174 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
+..+. .|+ ...|+.|..++-..|+..+|...|.+.....+. .....+.|...+...|.+++|..+|....+.. +.
T Consensus 311 ral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~ 386 (966)
T KOG4626|consen 311 RALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PE 386 (966)
T ss_pred HHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hh
Confidence 99986 454 678999999999999999999999999886433 45678889999999999999999999988754 22
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLIT 330 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~ 330 (415)
-...++.|...|-+.|++++|...+++.+. +.|+. ..|+.+...|...|+.+.|++.+.+++. +.|.. +.++
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~AeAhs 460 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTFAEAHS 460 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHHHHHHh
Confidence 466789999999999999999999999988 56764 5899999999999999999999999987 56654 6789
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 331 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.|...|...|++.+|++-|++..+..|..+.+|..++.+..--.+|
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999999999999777777777666544444
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.5e-19 Score=171.94 Aligned_cols=376 Identities=11% Similarity=-0.021 Sum_probs=253.3
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
..++........-.|+.++|+++++......| +...+..+...+...|++++|.++|++..+.. +.+...+..+..++
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455556667788888888888888775323 44567888888888888888888888887753 34455666777778
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
...|++++|+..++++.+..|.+.. +..+..++...|++++|+..++++.+.. +.+...+..+..++...+..++|++
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 8888888888888888777777777 8888888888888888888888888763 3344555556666666666555554
Q ss_pred HHH----------------------------------------------HHHhc-CCCCCHH-HHH----HHHHHHHcCC
Q 014978 171 TLK----------------------------------------------EMEKR-TCRKNRV-AYS----SLLSLYTNMG 198 (415)
Q Consensus 171 ~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~ 198 (415)
.++ .+.+. ...|+.. .+. ..+.++...|
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 444 33321 0112111 111 1122345667
Q ss_pred ChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCcHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
++++|+..|+++.+.+.+ |+. ....+..++...|++++|...|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 888888888888776532 222 22224667788888888888888876543211 1233455666777888888888
Q ss_pred HHHHHHHhCCC-----------CCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 275 SFYNRLVTKGI-----------KPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 275 ~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.+++.+..... .|+. ..+..+...+...|++++|++.++++.. ..+.+...+..+...+...|
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 88888776421 1221 2345566677788888888888888876 34455677777888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 396 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 396 (415)
++++|++.++++....|.+...+..+...+...|++ +..+++.+.+ ..|+....
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 888888888888888877777777777788888887 4666776665 34555544
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=8.5e-20 Score=183.06 Aligned_cols=366 Identities=10% Similarity=-0.008 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcc---hHH------------HHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGPD---TCS------------ALLHSYVQNKKSAEAEALMEKMSECGFL 77 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (415)
...+..+..+.+.|++++|+..|+.+.+..|+.. .|. .....+.+.|++++|++.|+++.+.. +
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-N 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3456677788899999999999999887766432 121 22446778999999999999998874 3
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH--------------------------------
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA-------------------------------- 125 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------- 125 (415)
.+...+..+..++...|++++|++.|+++.+..|.+...+..+...+.
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 456677778889999999999999999988776777766666655543
Q ss_pred ----------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014978 126 ----------SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195 (415)
Q Consensus 126 ----------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (415)
..|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3344444444444444432 2223334444444444444444444444444321 122222323333333
Q ss_pred cCCChHHHHHHHHHHHHcccccCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMND---------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
..++.++|+..++.+......++. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 444444444444433211111000 0112234456667777777777662 24566778889999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
.|++++|...|++..+..+ .+...+..++..+...|++++|++.++.+.. .-+.+...+..+..++...|++++|.
T Consensus 616 ~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998642 3677899999999999999999999998876 22335566777888899999999999
Q ss_pred HHHHHHHHcCCC-CH-----HHHHHHHHHHHhcCCC--cHHHHHHH-HhCCCC
Q 014978 347 HLLVTLRNAGHV-ST-----EIYNSLLRTYAKAGKM--PLIIVERM-QKDNVQ 390 (415)
Q Consensus 347 ~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~--a~~~~~~m-~~~~~~ 390 (415)
++++.+....+. ++ .++..+...+...|++ |...++.- ...|+.
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 999999886554 22 4567778889999998 45555544 444554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6.7e-19 Score=166.05 Aligned_cols=356 Identities=15% Similarity=0.070 Sum_probs=269.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+..|.+...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456678889999999999999999875 478888999999999999999999999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHHHH---------------------
Q 014978 128 NDKETAEKAFLELKKTKI-----------------------------DPDWISYSTLTS--------------------- 157 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~-----------------------------~~~~~~~~~l~~--------------------- 157 (415)
|++++|+..|......+- +++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432210 000000000000
Q ss_pred ---------HH------HhcCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh
Q 014978 158 ---------LY------IKMELPEKAATTLKEMEKRT-CRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 220 (415)
Q Consensus 158 ---------~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (415)
.+ ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..+++..+..+. ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 00 11257889999999988764 223 4566888888999999999999999999886432 355
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.++... .+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 78888889999999999999999998875 44678899999999999999999999999998642 25667888888999
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhc
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-------IYNSLLRTYAKA 373 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 373 (415)
+.|++++|+..|++++. ..+.+...+..+..++...|++++|...|++.....+.... .++..+..+...
T Consensus 445 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999987 34456788899999999999999999999999987765221 122233334445
Q ss_pred CCC--cHHHHHHHHhCCCCCCHHH-H-HHHHHhccCC-ccccccc
Q 014978 374 GKM--PLIIVERMQKDNVQMDAET-Q-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 374 g~~--a~~~~~~m~~~~~~p~~~t-~-~~l~~~~~~~-~~~~~~~ 413 (415)
|++ |..+++..... .|+... + .+...+...+ .+++.+.
T Consensus 522 ~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 522 QDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 777 46666665554 455543 2 3444444444 4555443
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.3e-17 Score=157.60 Aligned_cols=374 Identities=13% Similarity=0.041 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH--HHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM--LNL 89 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~ 89 (415)
..+..++..++.|+++.|+..|+++.+..|+. ..+ .++..+...|+.++|+..+++.... -+...+..+ ...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHH
Confidence 46778888999999999999999999887764 244 8888888999999999999998831 123333333 557
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
+...|++++|+++|+++.+..|.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 888899999999999999988888889989999999999999999999999877 566666655555555567776799
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHH-----------------------------------------------
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE----------------------------------------------- 202 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------------- 202 (415)
+.++++.+.. +.+...+..+..++.+.|-...
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998873 3345555555555544443322
Q ss_pred -HHHHHHHHHHc-ccccChhh-----HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 203 -VLRIWKKMMSL-FAKMNDAE-----YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 203 -a~~~~~~~~~~-~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
|+.-++.+... +..|.... ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 23333333331 12232211 223345677788888888888888876654445566778888888888888888
Q ss_pred HHHHHHhCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc-----------CCCCCHH-HHHHHHHHHHH
Q 014978 276 FYNRLVTKG-----IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR-----------KWVPDHR-LITAAYNKLEE 338 (415)
Q Consensus 276 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~p~~~-~~~~l~~~~~~ 338 (415)
++..+.... ..++......|..++...+++++|..+++.+.+... ...||-. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 888876532 122334456778888888888888888888876211 1122333 33445666778
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH
Q 014978 339 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 396 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 396 (415)
.|+..+|++.++.+....|.+......+...+...|.+ |...++..... .|+....
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~ 486 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLIL 486 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHH
Confidence 88888888888888888888888888888888888887 46566443333 5665554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.8e-17 Score=159.23 Aligned_cols=340 Identities=11% Similarity=0.005 Sum_probs=261.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+..+...|++++|.++|+.+....| ++..+..++..+...|++++|+..+++..+.. +.+.. +..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHC
Confidence 45667788999999999999999888766 56778888999999999999999999998874 44555 88888899999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH-----------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL----------------------------------- 138 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------- 138 (415)
|+.++|+..++++.+..|.+...+..+..++...+..+.|+..++
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 999999999999998888888888888887777776665554443
Q ss_pred -----------HHHhC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCCh
Q 014978 139 -----------ELKKT-KIDPDWI-SYS----TLTSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 139 -----------~~~~~-g~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 200 (415)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. .-..+..++...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 33322 1122211 111 1133456779999999999999887522 332 222357789999999
Q ss_pred HHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC-----------CCC---CchHHHHHHH
Q 014978 201 DEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----------TGD---PRVPNILLAA 263 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 263 (415)
++|+..|+++.+..... .......+..++...|++++|...++.+....+ .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 99999999987754221 123456667788999999999999999887532 112 1244567788
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCCh
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDI 342 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 342 (415)
+...|+.++|.++++++.... +.+...+..+...+...|++++|++.+++++. ..|+ ...+...+..+...|++
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCH
Confidence 899999999999999998763 23677888999999999999999999999987 3454 67777778889999999
Q ss_pred hHHHHHHHHHHHcCCCCHHH
Q 014978 343 DGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~ 362 (415)
++|+.+++++.+..|.+..+
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 99999999999998886543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=3.7e-15 Score=144.03 Aligned_cols=365 Identities=12% Similarity=0.037 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..|..+..+...|++++|+..|+.+.+..| ++.++..|...|.+.|++++|+..+++..+.. |+...|..++..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i-- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh--
Confidence 355666666777999999999999999877 56788899999999999999999999999864 5444444433222
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHH---------------------------------------HH-HHHHHhcCCHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYN---------------------------------------LW-LAACASQNDKET 132 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------------------------~l-~~~~~~~~~~~~ 132 (415)
+++++|..+++++.+..|.+..++. .. ..+|.+.+++++
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 7788888888877665444433332 22 556677888888
Q ss_pred HHHHHHHHHhCCCCC------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 133 AEKAFLELKKTKIDP------------------------------DWISYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 133 a~~~~~~~~~~g~~~------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
|+.++.++.+.+... +...+..+...|.+.|+.++|.+++.++...
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999887764211 1222234555566666666666666554321
Q ss_pred --------------------------------------------------------CC----------------------
Q 014978 179 --------------------------------------------------------TC---------------------- 180 (415)
Q Consensus 179 --------------------------------------------------------~~---------------------- 180 (415)
++
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 014978 181 -------------------------------------------------------------------------------- 180 (415)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (415)
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence
Q ss_pred -------------------------------CC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 181 -------------------------------RK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 181 -------------------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
++ +...|..+..++.. +++++|+..+.+..... |+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 00 11111111111111 22233333333333221 22222222233
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 307 (415)
.+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+... ++...+..+.....+.|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHH
Confidence 334667777777777665443 33334455556666677777777777777766431 122223333334445588888
Q ss_pred HHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIVERMQ 385 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a--~~~~~~m~ 385 (415)
|...++++++ ..|+...+..+..++.+.|++++|...+++.....|.+...++.+...+...|+++ ...+++..
T Consensus 595 Al~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888776 45677778888888888888888888888888888888888888888888888873 44555444
Q ss_pred hCCCCCCHHH
Q 014978 386 KDNVQMDAET 395 (415)
Q Consensus 386 ~~~~~p~~~t 395 (415)
+ ..|+...
T Consensus 671 ~--l~P~~~~ 678 (987)
T PRK09782 671 K--GLPDDPA 678 (987)
T ss_pred H--hCCCCHH
Confidence 4 3455443
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=3.9e-16 Score=138.71 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHH-HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHH--HHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSAL-LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN--HMLNLYIS 92 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 92 (415)
+..|+...-.|+++.|.+.+....+..+++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+..
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 334444444455555555555444432223222222 22224555555555555555443 23332221 12334445
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.|+++.|...++++.+..|.+......+...|.+.|++++|..++..+.+.+..++. ....+-
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------- 228 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------- 228 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------
Confidence 555555555555555444555555555555555555555555555555544322111 111000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
..+|..++.......+.+...++++..... .+.+......+...+...|+.++|.+++++..+. ++
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 011222222222223333333333333221 1123334444444555555555555555444442 22
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+... .++.+....++.+++.+..+...+..+ -|...+..+...|.+.+++++|.+.|+.+.+ ..|+...+..+
T Consensus 295 ~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~L 367 (398)
T PRK10747 295 DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWL 367 (398)
T ss_pred CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 2211 112222233455555555555444321 1333444445555555555555555555544 34555555555
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..++.+.|+.++|.+++++..
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555443
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=9.2e-16 Score=137.12 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch-HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CH--hHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGIKP-CY--TTWE 293 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~--~~~~ 293 (415)
+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+. .| |+ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHH
Confidence 334444445555555555555555555544321111100 011111112234455555555555543 22 22 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
++...+.+.|++++|.+.|+.+.. ....|+...+..+...+.+.|+.++|.+++++..
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555566666666666666663222 2245566555566666666666666666666543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=3.2e-15 Score=144.42 Aligned_cols=339 Identities=14% Similarity=0.039 Sum_probs=229.6
Q ss_pred hhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-CCCCcccHHHHHHHHHhcCC------
Q 014978 25 ALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-G-FLKCPLPYNHMLNLYISNGQ------ 95 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~------ 95 (415)
.+...+|...+..+....| +......+.-...+.|+.++|.++|+..... + -.++......++..|.+.+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 3455555555555555433 5555555555556677777777777766542 1 11122223345555555444
Q ss_pred -------------------cCcHHHHHHHHhh---cCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 014978 96 -------------------LDKVPQMLQELKK---NTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151 (415)
Q Consensus 96 -------------------~~~a~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 151 (415)
+.++...+..... ..|+ +...|..+..++.. +++++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222222222222 2355 77788888888876 7888899988887766 466554
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
...+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+..+. +...+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444555567889999999999887654 455555667778888899999999999988876422 22233333444455
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 232 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
.|++++|...+++..+.. |+...+..+..++.+.|+.++|...+++.....+ .+...++.+...+...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999999999888754 4577888888899999999999999999888642 2556777888888899999999999
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
++++++ ..+-+...+..+..++...|++++|+..++++.+..|.+..+.-.......+..+
T Consensus 666 l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 666 LERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 999887 2344667888888899999999999999999988887765554444444444433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=6.6e-15 Score=122.69 Aligned_cols=350 Identities=13% Similarity=0.141 Sum_probs=251.4
Q ss_pred HHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CC
Q 014978 33 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TS 111 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 111 (415)
-+|+..++ ...+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-+-... .+++.+|... ..
T Consensus 198 L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 44444433 7789999999999999999999999999887778899999999876544322 7888888877 99
Q ss_pred CCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC
Q 014978 112 PDVVTYNLWLAACASQNDKET----AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEMEK----RTCRK 182 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 182 (415)
||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998865 56788999999999999999999999999888754 5555555543 22222
Q ss_pred ----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc----ccccChh---hHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 183 ----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 183 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
|...|...+..|.+..+.+-|.++..-.... .+.|+.. -|..+....|.....+.....|+.+.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 4455777888888889998888877665432 1233322 3566777788889999999999999877778
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CH--------HH-----HHHHHH---H
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QM--------EK-----VLECFK---K 314 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~---~ 314 (415)
|+..+...++++....|.++-.-++|..+...|...+...-..++..+++.+ .. .. |..+++ .
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999988775444444444444444433 11 10 111111 1
Q ss_pred hHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-HHHHHHH---HHHHHhcCCC--cHHHHHHHHhC
Q 014978 315 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-S-TEIYNSL---LRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 315 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l---~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.....+.........+.+...+.+.|..++|.+++..+.+.+-. | ....|++ ++.-.+.... |...++-|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 11111223445566777788899999999999999999665433 2 2344544 4444444444 56666767655
Q ss_pred CC
Q 014978 388 NV 389 (415)
Q Consensus 388 ~~ 389 (415)
++
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 54
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.4e-15 Score=138.79 Aligned_cols=363 Identities=13% Similarity=0.116 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
..|..|-++-..|++++|...|.......++. ..+-.|.+.+.+.|+++.+...|+...+.. +.+..+...+...|.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHH
Confidence 45666777788888888888888877776654 344567788888888888888888888763 345566666666666
Q ss_pred hcC----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcC
Q 014978 92 SNG----QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK----KTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 92 ~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..+ ..++|..++.+..+..+.|...|-.+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 654 45667777777766677888888888887766555544 66655443 4455577788888888888889
Q ss_pred CHHHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh-hHHHHHHHHHhcC
Q 014978 164 LPEKAATTLKEMEKR---TCRKNR------VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLG 233 (415)
Q Consensus 164 ~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 233 (415)
++++|...|...... ...++. .+-..+...+-..++++.|.+.|..+.... |.-. .|..++......+
T Consensus 467 ~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 467 NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhcc
Confidence 988888888887654 111222 223345555666677777778777776643 2222 2333332223345
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHh-----------
Q 014978 234 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLK----------- 301 (415)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----------- 301 (415)
...+|...++.+...+ ..++..++.+...+.....+..|.+-|....+.- ..+|..+...|...|.+
T Consensus 545 ~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 5566666666555433 2244444444444444444444444333333211 11233333333332221
Q ss_pred -cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cH
Q 014978 302 -KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PL 378 (415)
Q Consensus 302 -~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~ 378 (415)
.+..++|+++|.+++. .-+-|...-+.+.-.++..|++..|..+|.++++.......+|..+.++|..+|+| |.
T Consensus 624 ~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 1223444444444443 12223344444444444444444444444444444333334444444444444444 34
Q ss_pred HHHHHH
Q 014978 379 IIVERM 384 (415)
Q Consensus 379 ~~~~~m 384 (415)
++|+..
T Consensus 701 qmYe~~ 706 (1018)
T KOG2002|consen 701 QMYENC 706 (1018)
T ss_pred HHHHHH
Confidence 444433
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=7.9e-15 Score=138.91 Aligned_cols=361 Identities=13% Similarity=0.030 Sum_probs=266.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-hHHHH--HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPD-TCSAL--LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
..+..+...|+.++|+..+++... |++. .+..+ ...+...|++++|+++|+++.+.. +.++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 445556677999999999998884 5333 33333 557778899999999999998875 34566677777888888
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL- 172 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~- 172 (415)
++.++|++.++++.+..+ +...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|+++.
T Consensus 150 ~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999988877644 34445555555555666666999999998874 445556666666666655444333332
Q ss_pred -----------------------------------------------HHHHhc-CCCCC-HHHH----HHHHHHHHcCCC
Q 014978 173 -----------------------------------------------KEMEKR-TCRKN-RVAY----SSLLSLYTNMGY 199 (415)
Q Consensus 173 -----------------------------------------------~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~ 199 (415)
+.+... +..|. ...| .-.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 332221 11132 1222 234567788899
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHhcCcHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----TGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
+.++++.|+.+...+.+....+-..+..+|...+++++|..++..+..... +++......|..+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888665667888999999999999999999999876432 223344578999999999999999
Q ss_pred HHHHHHHhCCC-------------CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 275 SFYNRLVTKGI-------------KPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 275 ~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.+++.+.+..+ .||-. .+..++..+...|++.+|++.++++.. .-+-|......+...+...|
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 99999987322 22333 344566778899999999999999987 45668899999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ 385 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~ 385 (415)
.+.+|+..++......|.+..+.......+...|++ +..+.+...
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999888888888999999999999998 445554443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=4e-15 Score=134.79 Aligned_cols=359 Identities=14% Similarity=0.078 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+.++..+.-.|++++|.+++.++.++.| ++.+|..|...|-+.|+.+++...+-..-... +.|...|..+.....+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 456666666666999999999999999876 78899999999999999999998877665543 4577889999999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS----YSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~l~~~~~~~~~~~~a 168 (415)
.|.++.|.-+|.+..+..|++...+-.-+..|-+.|+...|...|.++.....+.|..- --.+++.+...++.+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999899999888899999999999999999999998743222222 23356667778888999
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc----------------------ChhhHH--
Q 014978 169 ATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----------------------NDAEYT-- 223 (415)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~~-- 223 (415)
.+.++.....+ -..+...++.++..+.+...++.+......+......+ +...|.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887632 23455678889999999999999998888776611111 111111
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 014978 224 --CVISSLVKLGEFEKAENIYDEWESIS--GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 299 (415)
Q Consensus 224 --~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 299 (415)
.+.-++.+....+....+.....+.+ +.-+...|..+..+|.+.|++.+|..+|..+......-+...|-.+..+|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 22234455555555555555555555 33456788899999999999999999999999865555677999999999
Q ss_pred HhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---------CHHHHHHHHHHH
Q 014978 300 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---------STEIYNSLLRTY 370 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~ 370 (415)
...|.++.|++.|..++.. .+-+...-..|...+.+.|+.++|.+.++.+...+.. .....-.....+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999882 2334456667777899999999999999997644421 123344555666
Q ss_pred HhcCCC
Q 014978 371 AKAGKM 376 (415)
Q Consensus 371 ~~~g~~ 376 (415)
...|+.
T Consensus 537 ~~~gk~ 542 (895)
T KOG2076|consen 537 FQVGKR 542 (895)
T ss_pred HHhhhH
Confidence 667765
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=4.4e-18 Score=144.71 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
......++++.|.+.++++....+.+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.+++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHH
Confidence 333344444444444444443333333334444443 3444444444444433332 1233333444444444444444
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 168 AATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 168 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+.++++.+.... .+++...|..+...+.+.|++++|++.+++..+..+. +......++..+...|+.+++..++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 444444433211 1223334444444444444444444444444443221 23334444444444444444444444443
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
+.. +.++..+..+..+|...|+.++|..+|++..... +.|+.....+..++...|+.++|.++.+++
T Consensus 208 ~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 208 KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 332 2333444444444444444444444444444321 113344444444444444444444444443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1e-15 Score=128.56 Aligned_cols=351 Identities=16% Similarity=0.073 Sum_probs=241.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc--------HHHHHHH
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP--------YNHMLNL 89 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~ 89 (415)
.|+.+.+.|++++|+.-|+...+..|+..+-..|+-++..-|+-++..+.|.+|...-..||..- ...|+.-
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 34556789999999999998888778876655555566667899999999999976432333221 1122221
Q ss_pred HHhc--------CCcCcHHHHHHHHhhc----CCCCHhH-------------HH--------HHHHHHHhcCCHHHHHHH
Q 014978 90 YISN--------GQLDKVPQMLQELKKN----TSPDVVT-------------YN--------LWLAACASQNDKETAEKA 136 (415)
Q Consensus 90 ~~~~--------~~~~~a~~~~~~~~~~----~~~~~~~-------------~~--------~l~~~~~~~~~~~~a~~~ 136 (415)
..+. .+-..|.+..-...+. +.|+-.. +. .-..-+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 1111 1112222222221111 2222110 00 112357888999998888
Q ss_pred HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 137 FLELKKTKIDPDWISYSTLT------------------------------------SLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
+.-+.+..-+.-...-+.|. +.....|++++|.+.|.+....+-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88776553221111111111 111224788999999988886532
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
......| .+.-.+-..|+.++|++.|-++... ..-+..+...+.+.|....+..+|++++.+.... ++.|+.+..-|
T Consensus 522 sc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 2222223 3344566789999999999887654 2336667788888999999999999999887654 46678889999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH-HHHc
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK-LEEQ 339 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 339 (415)
...|-+.|+-..|.+.+-+--.. ++.+..+...|..-|....-+++++.+|+++.- ++|+..-|..++.. +.+.
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal----iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHhc
Confidence 99999999999998876655443 344778888888889999999999999999854 89999999988865 5678
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
|+++.|..+|+...+.-|.+..+...|++.+...|-.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999888999999999999888855
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=8.8e-18 Score=142.86 Aligned_cols=264 Identities=15% Similarity=0.140 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhc-CcC-CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENL-PDK-MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (415)
...+..+..+.+.|++++|+++++.. ... +| ++..|..+.......++++.|++.++++...+. -++..+..++..
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 34456677888999999999999654 443 24 566677777788889999999999999998762 356677777777
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
...+++++|.+++...-+. .++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|
T Consensus 88 -~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred -ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7899999999999876544 4667788889999999999999999999987543 356778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.+.+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|...+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999873 4467888899999999999999999999887764 346667888999999999999999999999887
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
. +.|+.....+..++...|+.++|.++..++..
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp S-TT-HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccccc
Confidence 5 55888899999999999999999999887654
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.9e-14 Score=128.06 Aligned_cols=279 Identities=11% Similarity=0.061 Sum_probs=209.0
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS--TLTSLYIKMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~ 170 (415)
.|+++.|.+.+....+..+.....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 689999988877765432222333444455668899999999999998876 55554332 34678888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-------hhHHHHHHHHHhcCChHHHHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-------AEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998874 456777888889999999999999999999887654222 134444544455566677777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 244 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCC
Confidence 76543 2457778889999999999999999999999884 4455322 33444566999999999999887 345
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc--HHHHHH
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIVER 383 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a--~~~~~~ 383 (415)
-|...+..+...|.+.|++++|.+.|+.+.+..|. ...+..+...+.+.|+.+ ..++.+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677889999999999999999999999988655 455778999999999984 444443
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=3e-14 Score=127.43 Aligned_cols=299 Identities=10% Similarity=0.056 Sum_probs=209.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYI 91 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 91 (415)
.+..|+.....|+++.|.+.+....+..|++..+ -....+..+.|+++.|.+.+.+..+.. |+.. ........+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 4566777788889999999988887776665443 344566778899999999998887643 5543 3333467788
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH---HhcCCHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY-STLTSLY---IKMELPEK 167 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~---~~~~~~~~ 167 (415)
..|+++.|...++.+.+..|.+...+..+...+...|++++|.+.+..+.+.+.. +...+ ..-..++ ...+..++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999888887888888888889999999999999999988888643 33333 2222222 33333344
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhH-HHHHHHHHhcCChHHHHHHHH
Q 014978 168 AATTLKEMEKRTC---RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-TCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 168 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 243 (415)
+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+..++.....+ ..........++.+.+.+.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 4445555554421 136777888888888999999999999888886443221111 111122234577788888888
Q ss_pred HHHhccCCCCC--chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 244 EWESISGTGDP--RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 244 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 324 ~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777653 3344 556678888888999999999888543333467888888888888899999999988888765
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=8.3e-14 Score=112.07 Aligned_cols=287 Identities=14% Similarity=0.081 Sum_probs=133.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCC--HhHHHHHHHHHHhcCCHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD--VVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~ 134 (415)
.++++|.++|-+|.+.+ +.+..+.-+|.+.|-+.|..++|+++.+.+.++ .+.+ ..+...|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44455555555555432 222333344445555555555555555554432 0000 112334444555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555555443 222334445555555555555555555555544322221 23444555555555555555555555
Q ss_pred HHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 290 (415)
.+.+.+ .+..-..+.+.....|++..|.+.++.+.+.++..-+.+...|..+|...|+.++...++..+.+.. ++..
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 554322 2223333444555555555555555555555444344445555555555555555555555555432 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRN 354 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 354 (415)
.-..+...-....-.+.|..++.+-+. -+|+...+..++..-.. .|...+....++.|..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~----r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR----RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh----hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 222222222233334444444433333 24555555555554332 2334444445555444
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.1e-15 Score=130.08 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=228.5
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
+..+|+..|.++.+...........+..+|...+++++|+++|+.+.+.. ...+..+|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788999999766666666788889999999999999999999998763 123667888877766432 223333
Q ss_pred -HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 173 -KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 173 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
+.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+....++|.|...|+...... +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 233333 2456889999999999999999999999999985432 67789999888999999999999999887653 2
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
.+-..|-.+...|.+.++++.|.-.|+...+-++. +.+....+...+-+.|+.++|+.+++++... -+-|+-.-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHH
Confidence 24455666788999999999999999999985432 5667777888889999999999999999872 2234444445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t 395 (415)
-+..+...+++++|+..++++++.-|....++-.+...|.+.|+..+++...-...++.|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5666778899999999999999998888899999999999999998887777777777776554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3e-13 Score=114.02 Aligned_cols=372 Identities=16% Similarity=0.104 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHH--HHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--MLNLY 90 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~ 90 (415)
..+..|+..-+.|....|+..|.......| .-.+|..|..... +. +....... |.+.+...... +..++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DI----EILSILVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hH----HHHHHHHh-cCcccchHHHHHHHHHHH
Confidence 356778888889999999999988776534 4445544443332 22 22222222 22222111111 23455
Q ss_pred HhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 014978 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
....+.+++.+-...+... .+.+...-+..+.+.....+++.|+.+|+++.+... -.|..+|+.++-. +..+-.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk- 314 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH-
Confidence 5556777777777777666 555555555566666777888888888888887631 1245566665533 222211
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+.++.+-...--+--+.|...+.+-|.-.++.++|..+|++..+.++. ....|+.+.+-|....+...|..-++...+
T Consensus 315 -Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 -LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred -HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111111000223345666777777788888888888888876543 455788888888888888888888888887
Q ss_pred ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 248 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
.+ +.|-..|-.|.++|.-.+.+.=|+-.|++.... +| |...|.+|..+|.+.++.++|++.|+++.. .-..+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~ 466 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEG 466 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccch
Confidence 75 447788888888888888888888888888774 34 677888888888888888888888888877 234466
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH-HH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHVST---EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ-KV 398 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t~-~~ 398 (415)
..+..|...|-+.++.++|...|++.++. |..++ .+..-|...+.+.+++..+-.-.+......+...-- .+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence 77888888888888888888888776662 23322 333446667777788765554444444335555544 45
Q ss_pred HHHhcc
Q 014978 399 LKITSE 404 (415)
Q Consensus 399 l~~~~~ 404 (415)
++.+..
T Consensus 547 lReir~ 552 (559)
T KOG1155|consen 547 LREIRK 552 (559)
T ss_pred HHHHHH
Confidence 555543
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.2e-13 Score=123.82 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=257.4
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
....|++++|.+++.+.++.. +.....|..|...|-+.|+.+++...+-......|.|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444599999999999999875 5678899999999999999999999988877778889999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
-+|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.|. .....+++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999885 666666677788999999999999999999987422222 22334566777788889999999888
Q ss_pred HHcc-cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---------------------------CCchHHHHHH
Q 014978 211 MSLF-AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---------------------------DPRVPNILLA 262 (415)
Q Consensus 211 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~ 262 (415)
...+ -..+...++.++..+.+...++.+.............+ +..+ .-++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7732 23355578888899999999999988887766521111 1222 12233
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
++.+....+....+...+.+.++.| +...|.-+..+|...|++.+|+.+|..+.. ....-+...|..+..+|...|
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHHHHh
Confidence 3444455555555555555555333 556888999999999999999999999988 344456779999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ 385 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~ 385 (415)
.+++|.+.|+.++...|.+..+-.+|...+.+.|+. |++.++.+.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999998 466666543
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.9e-14 Score=128.32 Aligned_cols=362 Identities=14% Similarity=0.076 Sum_probs=244.5
Q ss_pred HHHHhhhhHHHHHHHHhcCcCC----CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcC
Q 014978 21 AQAQALQTRARENFFENLPDKM----RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNG 94 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 94 (415)
-+.-.|+++.+..+.+.+.... --..+|-.+.++|-..|++++|...|.+..+.. ++. ..+--+.+.+.+.|
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhc
Confidence 3445567777777666655542 123457777777777777777777777766553 333 23344567777777
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN----DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
+++.+...|+.+.+..|.+..+...|...|+..+ ..+.|..++.+..+.- +.|...|-.+...+.....+. ++.
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHH
Confidence 7777777777777777777777777777776664 4456666666665542 455666666666655544333 355
Q ss_pred HHHHHH----hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccCh------hhHHHHHHHHHhcCChHH
Q 014978 171 TLKEME----KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMND------AEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 171 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~ 237 (415)
+|..+. ..+.++.+...|.+...+...|.++.|...|+..... ...++. .+-..+.......++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 554433 3444566777888888888888888888888877654 122232 122335556667778888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|.+.|..+.+.. +.-...|..+.......+...+|...++.....+ ..++..+..+...+.....+..|.+-|....+
T Consensus 515 A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 515 AEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 888888887753 2233344444433344577888888888887643 34566677777788888888888887777766
Q ss_pred cccCCCCCHHHHHHHHHHHH------------HcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 014978 318 SVRKWVPDHRLITAAYNKLE------------EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVER 383 (415)
Q Consensus 318 ~~~~~~p~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~ 383 (415)
. ....+|..+...|...|. ..+..+.|+++|.++++..|.+..+-|-+.-.++..|++ |..+|..
T Consensus 593 ~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 K-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred h-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 4 223367777777777554 235678999999999999999999999999999999999 6889999
Q ss_pred HHhCCC
Q 014978 384 MQKDNV 389 (415)
Q Consensus 384 m~~~~~ 389 (415)
.++...
T Consensus 672 VrEa~~ 677 (1018)
T KOG2002|consen 672 VREATS 677 (1018)
T ss_pred HHHHHh
Confidence 887654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-14 Score=126.95 Aligned_cols=289 Identities=17% Similarity=0.114 Sum_probs=184.8
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCC
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGF--LKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 95 (415)
+......=+..+|+..|+..+...++. .+...+.++|...+++++|.++|+.+.+... ..+...|.+.+.-+-+
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--- 402 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--- 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---
Confidence 333445556778888888766555543 4445677778888888888888887776420 1134555555543322
Q ss_pred cCcHHHHHHH-HhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+-++.++.+ +....+....+|-++..+|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+.
T Consensus 403 -~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 403 -EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred -hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 223333332 333356667777777777777777777777777777663 22566777777777777777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 254 (415)
..... +-+-..|..+.-.|.+.++++.|+-.|+++.+.++. +......+...+.+.|+.++|+.+++++...+.. |+
T Consensus 481 Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 481 ALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 76532 223344555666777777777777777777765433 4445555666667777777777777777665533 44
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..--..+..+...++.++|+..++++.+. .| +...|..+...|.+.|+.+.|+.-|..|.+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44445566666677777777777777764 34 345666667777777777777777777655
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-13 Score=116.71 Aligned_cols=363 Identities=13% Similarity=0.071 Sum_probs=253.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNG 94 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 94 (415)
..|..+.++|++++|++.+.++.+..|+ +..|.....+|...|+++++.+.-.+.++.+ |+ +..+..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 4456678999999999999999999898 8889999999999999999999888887753 43 233433444555555
Q ss_pred CcCcHHH----------------------HHHH---------Hhhc---CCCCHhHHHHHHHHHHhc--------C----
Q 014978 95 QLDKVPQ----------------------MLQE---------LKKN---TSPDVVTYNLWLAACASQ--------N---- 128 (415)
Q Consensus 95 ~~~~a~~----------------------~~~~---------~~~~---~~~~~~~~~~l~~~~~~~--------~---- 128 (415)
++++|+. ++++ +.++ .-|+.....+....+... +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 5555432 2211 1211 223333333333322110 0
Q ss_pred ----------------CHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 129 ----------------DKETAEKAFLELKKT---KIDPD---------WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 129 ----------------~~~~a~~~~~~~~~~---g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
.+..|.+.+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 122222222221110 00111 11222222334446888899999999988743
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
. +...|--+..+|....+.++....|.+....++. +..+|..-.+...-.+++++|..-|++..... +-+...|..+
T Consensus 358 ~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 358 A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 3 3333777888999999999999999999887654 67788888888888999999999999998865 3367777778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccC---C--CCCHHHHHHHHHH
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---W--VPDHRLITAAYNK 335 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~p~~~~~~~l~~~ 335 (415)
..+..+.+++++++..|++..++ ++-.+..|+.....+..++++++|.+.|+.+++.... + .+.+.+.-.++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 88888899999999999999987 3346789999999999999999999999999873211 1 1112222333333
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
- -.+++..|..++++..+.+|....+|.+|...-.+.|+. |+++|+.-..
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 348999999999999999999999999999999999998 5777765443
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=8.8e-13 Score=109.42 Aligned_cols=284 Identities=14% Similarity=0.094 Sum_probs=133.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
.|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544443111 122333334444455555555555555443 333444444445555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
+.++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55554443 233344455555555555555555555555554433322 2344444444444444444444444
Q ss_pred HHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 014978 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289 (415)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 289 (415)
.-.. .+-+...-..++.-+...|+.++|.++..+..+.+..|+ -...-.+.+-++...-.+..+.-.... .-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3322 222333444444555555555555555555555444433 111112233444444444444433321 1133
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..+..|...|.+.+.|.+|...|+.+++ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555555555555555555443 45555555555555555555555555555543
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2e-12 Score=113.66 Aligned_cols=350 Identities=10% Similarity=0.042 Sum_probs=198.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
.+.+.++-|+.+|..+.+..| +...|...+..--..|..++...+|++.... ++.....|-.....+-..|++..|..
T Consensus 527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 344445555555555554433 3444555544444555555555555555543 22233334434444445566666666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
++...-+..|.+...|-..+........++.|..+|.+.... .|+...|..-++.---.++.++|.+++++..+. ++
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp 682 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP 682 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence 665555555555555655555555666666666666555543 344445544444444455556666666555554 12
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (415)
.-...|..+.+.+-+.++.+.|.+.|..-.+. .+.....|..+...=.+.|.+-.|..+++...-.+ +.+...|-..|
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~I 760 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESI 760 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHH
Confidence 22334555555555555555555555544332 11122344444444455555666666666555444 33555555566
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC
Q 014978 262 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341 (415)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 341 (415)
++-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-....+.+++ ...|+.....+...+....+
T Consensus 761 r~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-------ce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-------CEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-------ccCCchhHHHHHHHHHHHHH
Confidence 6666666666666555555543 222334555555555554443333333332 34566677778888888999
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 342 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
++.|++.|.+..+.++..-.+|..+...+.+.|.- ..+++.....
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999889999999999999965 3666666554
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.7e-13 Score=109.15 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=150.7
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPD--WISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
++.++|.+.|-+|.+..+.+..+--+|.+.+.+.|..+.|+++.+.+.++. .+-+ ......|..=|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 556666666666666555555566666666666666666666666665542 1101 1233445555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh----hHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+... .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666666543 2233445566666666666666666666666554443322 35555666666666666666666666
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++...++.++.+ ..++.
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~----~~~g~ 282 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME----TNTGA 282 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----ccCCc
Confidence 554 2244444555666666666666666666666654333334555666666666666666666666655 22333
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
..-..+...-....-.+.|...+.+-....| +...+..|+..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence 3333333333333344455554444444332 23445555554443
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=9.8e-13 Score=109.99 Aligned_cols=321 Identities=13% Similarity=0.137 Sum_probs=239.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH--hcCCcCcH-HHHHHHH-----------------
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI--SNGQLDKV-PQMLQEL----------------- 106 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~----------------- 106 (415)
+=+.|+.. ...|....+.-+|+.|.+.|++.+...-..|++.-+ .+.++--| ++.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44555543 457888999999999999998777766655554322 22221111 1111111
Q ss_pred ---hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 014978 107 ---KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 107 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (415)
.+..|.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-+-. ...+++.+|.+..+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 11246778899999999999999999999999998887788999999998775533 33788999999989999
Q ss_pred HHHHHHHHHHHHcCCChHH----HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCCC--
Q 014978 184 RVAYSSLLSLYTNMGYKDE----VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK-AENIYDEWES----ISGTG-- 252 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~~-- 252 (415)
..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++.. ..+.|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998864 67788999999999999999999999999887744 4455555433 22222
Q ss_pred --CCchHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 253 --DPRVPNILLAAYINRNQLEMAESFYNRLVTK----GIKPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 253 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
+...|..-+..|.+..+.+.|.++-.-+... -+.|+. .-|..+....++....+.....|+.|+. .-.-
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP--~~y~ 430 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP--SAYF 430 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ceec
Confidence 3445566778888888999888877665432 123332 2456677788888999999999999998 6778
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 374 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 374 (415)
|+..+...++++....|.++-..+++..++..|.. ....-.-++..+++..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988855 4444555555555544
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=2.7e-12 Score=106.55 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=150.7
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
|+.-.-.|+|..|+++.....+..+.+ ..|-.-+.+--+.|+.+.+-..+.+..+..-.++...+-.........|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 333345566666666655544433322 2333334444455666666666666555421233333444445555566666
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 170 (415)
.|..-.+++.+..|.+.........+|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-..
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 66666666555555556666666666666666666666666666655433322 33344443333333444344
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
.++....+ .+.++..-..++.-+.+.|+.++|.++.++..+.+.+|+ ... .-.+.+-++...-.+..+...+..
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h- 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH- 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-
Confidence 44444333 233444444555555666666666666666655554443 111 113344555555555555444332
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+-++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 223455555666666666666666666655543 45566666666666666666666666655543
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.2e-13 Score=114.72 Aligned_cols=374 Identities=14% Similarity=0.120 Sum_probs=230.4
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCc------chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 23 AQALQTRARENFFENLPDKMRGP------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+...+.+|+++++-+.++.|+. ...+.+...+.+.|.++.|+..|+...+.. |+..+--.|+-++..-|+-
T Consensus 248 ~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcH
Confidence 44556666777766666654432 234444455667777777777777766643 5544433344445555666
Q ss_pred CcHHHHHHHHhhc-------------CCCCHhHHHHHHH-----HHHhcCC--HHHHHHHHHHHHhCCCCCCHH------
Q 014978 97 DKVPQMLQELKKN-------------TSPDVVTYNLWLA-----ACASQND--KETAEKAFLELKKTKIDPDWI------ 150 (415)
Q Consensus 97 ~~a~~~~~~~~~~-------------~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~g~~~~~~------ 150 (415)
++..+.|.+|... ..|+....+..+. -.-+.++ -++++-.--+++.--+.|+-.
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 6677777666432 1122222222211 1111111 111111111111111112110
Q ss_pred -------HH--------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH------------------------
Q 014978 151 -------SY--------STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL------------------------ 191 (415)
Q Consensus 151 -------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------ 191 (415)
.+ ..-..-|.+.|+++.|.+++.-..+.+-+.-...-+.|-
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 00 112345889999999999998776643221111111110
Q ss_pred ------------HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 192 ------------SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 192 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
......|++++|.+.|++.+.....-....|+ +.-.+...|++++|++.|-++... +..+..+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 01124578899999999987764432333344 344677889999999998876543 2336677778
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
+...|-...+...|.+++.+.... ++.|+.....|...|-+.|+-..|.+++-+--+ -++.+..+..-|...|...
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhh
Confidence 888999999999999999887764 444788899999999999999999998877544 5777899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCC--cHHHHHHHHhCCCCCCHHHHHHH-HHhccCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA-KAGKM--PLIIVERMQKDNVQMDAETQKVL-KITSEMP 406 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~--a~~~~~~m~~~~~~p~~~t~~~l-~~~~~~~ 406 (415)
.-++.++.+|++..-..| +..-|..++..|. +.|++ +..++... ...++-|...+..| +.+..++
T Consensus 640 qf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHHHHhcccc
Confidence 999999999998865433 3456877776665 57888 56666554 34566777777644 4444454
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=7e-11 Score=104.21 Aligned_cols=350 Identities=12% Similarity=0.072 Sum_probs=272.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCCCCcccHHHHHHHHH
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKM----SECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 91 (415)
..-+++++.--++.|..+++++.+.-| ++.+|-+-...--.+|+.+...+++.+- ...|+..+...|-.=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344566777788888888888877755 6778877777777788888888877654 34566667777777777777
Q ss_pred hcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 92 SNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
..|..-.+..+......- ...-..||+.-...|.+.+.++-|..+|...++- .+-+...|......=-..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 777777777777665543 2334567888888888888899899999888876 344556677666666667888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
..+|+++... ++.....|-.....+-..|+...|..++....+..+. +...|..-+..-....+++.|..+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8999988877 4556777877778888889999999999998887544 6667888888888899999999999887663
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 327 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~ 327 (415)
.|+...|.--+...--.++.++|.+++++.++. .|+. ..|..+.+.+-+.++.+.|.+.|..-.+ ..+....
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ip 720 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIP 720 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCch
Confidence 567778877777777788999999999888875 4554 4777788888888999999888887655 3444556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.|..|...=.+.|.+..|..++++.+-.+|.+...|...|++-.+.|+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 7777777777888999999999999999999999999999999999986
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.1e-11 Score=102.49 Aligned_cols=355 Identities=10% Similarity=0.069 Sum_probs=248.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
...|++..|.++|+...+-.|+..+|.+.|..-.+-+..+.|..+|+...-. .|++.+|......=.+.|....|..+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4567777777777777777777777777777777777777777777777654 47777777777777777777777777
Q ss_pred HHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH------
Q 014978 103 LQELKKNTS---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATT------ 171 (415)
Q Consensus 103 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 171 (415)
|....+... .+...+.+.+..-.++..++.|.-+|+-.++. ++.+ ...|......=-+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 777655422 22334555555556666777777777776665 2222 23444444443444554333222
Q ss_pred --HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh-------hHHHHHHHH---HhcCChHHHH
Q 014978 172 --LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSL---VKLGEFEKAE 239 (415)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g~~~~a~ 239 (415)
++.+.+.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-.. .|..+--++ ....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444443 557778888888888889999999999999876 444221 222222222 3467899999
Q ss_pred HHHHHHHhccCCCCCchHHH----HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 240 NIYDEWESISGTGDPRVPNI----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
++++...+. ++....||.- ....-.++.++..|.+++...+. ..|-..+|...|..-.+.++++.+..++++-
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999988874 3444555543 34444567889999999988775 4678889999999889999999999999999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCC
Q 014978 316 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 316 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~ 388 (415)
++ --+.+..+|......=...|+.+.|..+|+.+++.... |...|.+.|..-...|.+ +.++++++.+..
T Consensus 464 le---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 464 LE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred Hh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 87 22446788888888888899999999999999887655 557899999988888888 577888777643
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.62 E-value=5.3e-13 Score=123.97 Aligned_cols=265 Identities=14% Similarity=0.019 Sum_probs=186.9
Q ss_pred CCcchHHHHHHHHH-----hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---------cCCcCcHHHHHHHHhh
Q 014978 43 RGPDTCSALLHSYV-----QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS---------NGQLDKVPQMLQELKK 108 (415)
Q Consensus 43 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 108 (415)
.+..+|...+++-. ..+++++|.+.|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 46677766666532 2356899999999998865 2244556555554432 2347889999999988
Q ss_pred cCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH
Q 014978 109 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAY 187 (415)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 187 (415)
..|.+..++..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.. |+ ...+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 888899999999999999999999999999999885 4456678888999999999999999999998864 33 3333
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34455566688999999999998765422244456777788889999999999998876542 22344455666677777
Q ss_pred CcHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 268 NQLEMAESFYNRLVTK-GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
| +.|...++.+.+. ...|....+..+ .+.-.|+.+.+..+ +++.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 7 4777777776542 112322333333 34445666666555 76665
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.7e-12 Score=105.40 Aligned_cols=312 Identities=16% Similarity=0.144 Sum_probs=213.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCC---CCHhHHHHHHHHHHhc
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS---PDVVTYNLWLAACASQ 127 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 127 (415)
+..++-.....+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+..| .|..+|..++-+--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667888888888888888765555555555556667888888888888887743 3555666655443222
Q ss_pred CCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
.+. .++.+-. ..+ +-.+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++.
T Consensus 313 skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 1221111 111 3345677788888888888888888888888764 44567788888888888888888888
Q ss_pred HHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 014978 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286 (415)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 286 (415)
|+..++..+. |-..|..+.++|.-.+...-|.-.|++..+-. +.|...|.+|..+|.+.+++++|.+.|......| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 8888876443 66788888888888888888888888887764 4578888888888888888888888888887765 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc--ccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
.+...+..+...|-+.++..+|...|.+-++. ..+...+ .....-|..-+.+.+++++|..........+ ....-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~-~e~ee 542 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE-TECEE 542 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC-chHHH
Confidence 35577888888888888888888888776651 1222222 2222334555777888888887776666552 22233
Q ss_pred HHHHHHHHHh
Q 014978 363 YNSLLRTYAK 372 (415)
Q Consensus 363 ~~~l~~~~~~ 372 (415)
-+.|++.+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=110.47 Aligned_cols=232 Identities=16% Similarity=0.202 Sum_probs=199.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
|..--+-+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-++|.+..+++.|+.++.+-.+..+ .++....-+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHH
Confidence 3344467899999999999999999998876 57788899999999999999999999999888632 24444556778
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 307 (415)
.+...++.++|.++++...+.. +.++.....+...|.-.++++.|+++++++++.|+. ++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8889999999999999998875 557888888888999999999999999999999975 88999999999999999999
Q ss_pred HHHHHHHhHhcccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVER 383 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~ 383 (415)
++..|.++.+. .-.|+ ...|..+.......|++..|.+.|+.....++.....+|.|.-.-.+.|+. |..++..
T Consensus 377 ~L~sf~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999983 34444 467888988889999999999999999999999999999999999999998 5666665
Q ss_pred HHh
Q 014978 384 MQK 386 (415)
Q Consensus 384 m~~ 386 (415)
-..
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 443
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=2.8e-11 Score=108.94 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=209.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH-HHHHhc-
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML-NLYISN- 93 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~- 93 (415)
-....+...|++++|++.++.-...-+|.. ........+.+.|+.++|..+|..+++++ |+...|...+ .+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 334466889999999999998777666654 45677889999999999999999999987 6655554444 444222
Q ss_pred ----CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 94 ----GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 94 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+.+...++|+++....|.....-..-+.. .....+ ..+..++..+...|+| .+|+.+-..|.......-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 245667888888877654333222222222 222233 3566677778888864 4566666667655555555
Q ss_pred HHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 169 ATTLKEMEKR----T----------CRKNRV--AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 169 ~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
.+++...... + -+|+.. ++..+...|...|++++|++++++.++..+. ....|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555555432 1 134443 4466678888999999999999999986432 356788889999999
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHH--------HHHHHHHHhcCC
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW--------ELLTWGYLKKGQ 304 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~~~ 304 (415)
|++.+|...++.....+. .|...-+-.+..+.+.|++++|.+++......+..|....+ .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988763 37777778889999999999999999999876654422222 244578899999
Q ss_pred HHHHHHHHHHhHhc
Q 014978 305 MEKVLECFKKAIGS 318 (415)
Q Consensus 305 ~~~a~~~~~~~~~~ 318 (415)
+..|++.|....+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777663
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-11 Score=107.37 Aligned_cols=380 Identities=12% Similarity=0.039 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL----KCPLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 90 (415)
++..+-.+....+.++|...|..+.. .|+..|..+...-.. ..-.+.+.|+.+...+.. .+......+....
T Consensus 144 c~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 144 CYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred eeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 44555566667778888888888776 355444443222111 112233333333332211 1122222222211
Q ss_pred HhcCCcCcHHHHHH-HHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 91 ISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 91 ~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
.....-+.....-. .-......+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-.
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHH
Confidence 11111111111111 0011134566667777788888899999999999888774 666667777777888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
.+=.++.+. .|....+|-++.--|...|..++|.++|.+....+.. =...|.....+|...|.-++|...+....+.-
T Consensus 299 ~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 299 LLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 888888876 3556778888888888889999999999887664322 23468888888888999999988888776641
Q ss_pred CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC----C
Q 014978 250 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV----P 324 (415)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----p 324 (415)
+....-+-.+.--|.+.++.+.|.++|.+.... .| |+...+-+.-.....+.+.+|..+|+..+....... .
T Consensus 377 -~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 -PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred -cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 222233344556677889999999999888764 34 667788887777788889999999988874211111 2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH-HHHHHhc
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ-KVLKITS 403 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t~-~~l~~~~ 403 (415)
-..+++.|..+|.+.+.+++|+..+++.....+.+..++.++.-.|...|+++.++-.--+...+.|+..+. .+|..+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345678888899999999999999999999888888999999999999999866665556777888988766 5665443
Q ss_pred c
Q 014978 404 E 404 (415)
Q Consensus 404 ~ 404 (415)
+
T Consensus 534 e 534 (611)
T KOG1173|consen 534 E 534 (611)
T ss_pred H
Confidence 3
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=7e-12 Score=116.56 Aligned_cols=184 Identities=12% Similarity=0.024 Sum_probs=92.3
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+++|...|++..+..|.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 3455566665555555555555555444332 123455666666555553 334445555555555556666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+|...|+++.+.+ +.+...+..+..++...|++++|+..+++..+..+. +...+..++..+...|++++|...++++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6666666555542 233444555555555566666666666665554322 11122222333444555555655555554
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+...+.+...+..+..++...|+.++|...+.++..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 432122233344455555555666666655555443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-11 Score=105.88 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=188.5
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.-.|.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 334444555667788888888888877764 5666677777777777787777777777777777778888888888887
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
-.|+.++|.++|.+....+ +.=...|-...+.|.-.|..++|...+..+.+. ++-..-.+--+.--|.+.+....|.+
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 7888888888887766542 112346777777788888888888777766553 11121122223445666777888888
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc--CCC----CCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS--GTG----DPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
+|.+.....+ -|+...+-+.-.....+.+.+|..+|+.....- ..+ -..+++.|.++|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 8877766432 255566666655566777888888777655211 011 223467777778888888888888887
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 280 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+... +.+..++.++.-.|...|+++.|++.|.+++- +.|+-.+...++..
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKL 531 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHH
Confidence 77653 23667777777777778888888888887765 66776666655543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=4.4e-12 Score=105.26 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=100.9
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..+.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666655543 2234445555555555666666666666555544445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
..|++++|...+++..+... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666655554321 1122334444555555555555555555555432 223344444555555555555555
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
..+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555443 1222333334444444555555555544443
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.7e-13 Score=108.57 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
..+.|-....--+....-.+..-.+.....+. |-.--+.+.++|.+.|-+.+|.+.++.-++. .|-+.||..|
T Consensus 185 Fey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllL 262 (478)
T KOG1129|consen 185 FEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLL 262 (478)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHH
Confidence 33444444444444444444444444444322 1112257888999999999999999888775 4677788888
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
-..|.+-.++..|+.++.+-....|.|+.......+++-..++.++|.++|+...+.. +.++.....+...|.-.++++
T Consensus 263 skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChH
Confidence 8999999999999999999888888888888888999999999999999999988773 456667777788888889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh--hhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
-|+.+++++.+.|+. +...|+.+.-+|.-.++++-++..|.+....-..|+. .+|..+.......||+..|.+.|+.
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 999999999999854 7788888888888889999999999988876554543 3577788888889999999999998
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
....+ ..+...+|.|.-.-.+.|+++.|..+++.....
T Consensus 421 aL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88765 446778888888888999999999999988764
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=6.4e-12 Score=104.25 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=111.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555442 2334455555556666666666666666555542 2334455555555
Q ss_pred HHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655432111 22344445555666666666666666665543 2234455566666666666666
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 273 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|...+++.... ...+...+..+...+...|+.++|..+++.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666554 122444555555666666666666666665543
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.4e-09 Score=92.67 Aligned_cols=350 Identities=11% Similarity=0.090 Sum_probs=206.2
Q ss_pred HHhhhhHHHHHHHHhcCcCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHH
Q 014978 23 AQALQTRARENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 100 (415)
...+++..|..+|+.+.... .+...|-..+.+-.++..+..|..+++.....- |- ...|--.+..=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHH
Confidence 45566666666666655542 344555555555555555555555555554431 21 112222233333345555555
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM----- 175 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----- 175 (415)
++|+...+ ..|+..+|++.+..-.+.+.++.|..+|++.+-. .|++.+|-.....=.+.|....|..+|+..
T Consensus 162 qiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 162 QIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55555333 2455555555555555555555555555555432 355555544444444445544444444444
Q ss_pred --------------------------------HhcCCCCC--HHHHHHHHHHHHcCCChHHHHHH--------HHHHHHc
Q 014978 176 --------------------------------EKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRI--------WKKMMSL 213 (415)
Q Consensus 176 --------------------------------~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~ 213 (415)
..+ ++.+ ...|..+...=-+-|+....... |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 333 1212 22233333222233433322221 2333333
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc-------hHHHH---HHHHHhcCcHHHHHHHHHHHHhC
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-------VPNIL---LAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
+ +-|-.+|--.++.-...|+.+...++|+..... ++|-.. +|..+ +..-....+.+.+.++|+..++
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 2 225556777777777889999999999988765 344221 11111 1122346788899999998887
Q ss_pred CCCC-CHhHHHHHHHH----HHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 284 GIKP-CYTTWELLTWG----YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 284 ~~~p-~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+.| ...||.-+--. -.++.++..|.+++..++ |.-|...+|...|..=.+.++++....++++.++.+|.
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 344 33455544333 357889999999999885 57899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 359 STEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
+-.+|......-...|+. +.++|+--..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 989999888888888887 4667765544
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.9e-10 Score=96.08 Aligned_cols=299 Identities=12% Similarity=0.076 Sum_probs=223.3
Q ss_pred cCcHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
.++...+...+-.+... -++.|+.....+..++...|+..+|+..|++.....|.++.........+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444444444433322 24456777788888888999999999999887766666677777777777888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
...+.... +-+...|-.-+......++++.|+.+-++.++.+ +.+...|-.-...+...+++++|.-.|+..+...+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap- 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP- 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-
Confidence 87776552 2344445555556667788999999988888764 34566676667888899999999999999887543
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH-HHHH-hcCcHHHHHHHHHHHHhCCCCCCHh-HHH
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAYI-NRNQLEMAESFYNRLVTKGIKPCYT-TWE 293 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~-~~~ 293 (415)
-+...|..|+.+|...|.+.+|..+-+...+. ++.+..+...+. ..+. ...--++|.++++..+.. .|+.. ..+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 36778999999999999999998887776654 244555555442 2222 233457888998887764 56653 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 366 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 366 (415)
.+...|...|...+++.++++.+. ..||....+.|.+.+...+.+++|...|....+.+|.+..+...|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 777888899999999999999876 689999999999999999999999999999999999876655444
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=1.6e-10 Score=104.07 Aligned_cols=293 Identities=14% Similarity=0.048 Sum_probs=213.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC---
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN--- 128 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 128 (415)
...+...|++++|++.+++-... +.............+.+.|+.++|..+|..+.+..|.|...|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 45667889999999999886554 33345556677789999999999999999999999999999999988874333
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 129 --DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP-EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 129 --~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
+.+....+|+++... -|.......+.-.+.....+ ..+..++..+..+|+|+ +|+.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 577888899988766 34444443333333332233 34556667777888653 56666666665555555555
Q ss_pred HHHHHHHc----c----------cccCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCc
Q 014978 206 IWKKMMSL----F----------AKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269 (415)
Q Consensus 206 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 269 (415)
++...... + -+|+. .++..+...|-..|++++|...+++..++. +..+..|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 55555432 1 12333 245667788889999999999999999874 3347788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH------H--HHHHHHHHHHcCC
Q 014978 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR------L--ITAAYNKLEEQGD 341 (415)
Q Consensus 270 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~------~--~~~l~~~~~~~g~ 341 (415)
+.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++..-.+ .+..|-.. . ......+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr--~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR--EDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC--CCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999987543 666777788888999999999999988776 33333222 1 2445678999999
Q ss_pred hhHHHHHHHHHHH
Q 014978 342 IDGAEHLLVTLRN 354 (415)
Q Consensus 342 ~~~a~~~~~~~~~ 354 (415)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877665
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.1e-10 Score=96.17 Aligned_cols=302 Identities=15% Similarity=0.064 Sum_probs=206.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
+-....-|.++|++++|++.|.+.++.. |+ +..|.....+|...|+|+++.+.-.+..+..|.-+..+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 3445667889999999999999999864 77 78889999999999999999999888887767777788888888888
Q ss_pred cCCHHHHHHHH----------------------HH---------HHhCC--CCCCHHHHHHHHHHHHhc--------CC-
Q 014978 127 QNDKETAEKAF----------------------LE---------LKKTK--IDPDWISYSTLTSLYIKM--------EL- 164 (415)
Q Consensus 127 ~~~~~~a~~~~----------------------~~---------~~~~g--~~~~~~~~~~l~~~~~~~--------~~- 164 (415)
.|++++|+.=. +. +.+.+ +-|+.....+....+-.. ++
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 88887765321 11 11011 123333322222222110 00
Q ss_pred ----HHHHHHHHHH------------HHhc----CCCC--C---------HHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 165 ----PEKAATTLKE------------MEKR----TCRK--N---------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 165 ----~~~a~~~~~~------------~~~~----~~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++.+.+.. +.+. -..+ + ..+.......+.-.|+.-.|.+-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 1111111111 1110 0001 1 111222222334557778888888888876
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTW 292 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 292 (415)
...++. .|-.+..+|....+.++.+..|+...+.+ +-++.+|-.-.+.+.-.+++++|..=|++.+.. .| +...|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHH
Confidence 554332 36667778888888888899998888876 347778888888888888889999888888875 34 44566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 293 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 293 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..+..+..+.+.+++++..|++... .++.-++.|+.....+..+++++.|.+.|+..++..+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 6666667788889999999999887 57777788888888888899999999999888876655
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.5e-09 Score=92.65 Aligned_cols=363 Identities=14% Similarity=0.085 Sum_probs=207.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc
Q 014978 4 RRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (415)
..+.|...-...+.....+...|++++|.+....+....| +..++..=+-++.+.++|++|+.+.+.-... ..+...
T Consensus 4 ~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~ 81 (652)
T KOG2376|consen 4 EKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSF 81 (652)
T ss_pred cccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchh
Confidence 3444555545677777788999999999999999998877 5677777778889999999999666543211 111111
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP--------------- 147 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--------------- 147 (415)
+-.-..+..+.+..++|+..++.. .+.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 111123344678888888888733 24455566777788888888888888888886553220
Q ss_pred ------------CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcC-------------CCCCHHH-HHHHHHHHHcCC
Q 014978 148 ------------DWISYSTL---TSLYIKMELPEKAATTLKEMEKRT-------------CRKNRVA-YSSLLSLYTNMG 198 (415)
Q Consensus 148 ------------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~-~~~l~~~~~~~~ 198 (415)
...+|..+ .-.+...|++.+|+++++...+.+ +.....+ -.-+..++-..|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 01123222 234556788888888888873211 0001111 123445566778
Q ss_pred ChHHHHHHHHHHHHcccccChhh----HHHHH------------------------------------------------
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAE----YTCVI------------------------------------------------ 226 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~------------------------------------------------ 226 (415)
+.++|..+|...++.... |... -|.++
T Consensus 239 qt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777665332 2211 01111
Q ss_pred -----------------------------HHHH--hcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 227 -----------------------------SSLV--KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 227 -----------------------------~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
..+. +......+..++....+........+.-.++......|+++.|.+
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 0000 000111222222222221111112233344555666777777777
Q ss_pred HHH--------HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH----HHHHHHcCChh
Q 014978 276 FYN--------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA----YNKLEEQGDID 343 (415)
Q Consensus 276 ~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~ 343 (415)
++. .+.+.+..| .+...+...+.+.++.+.|..++.+++.....-.+.......+ ...-.+.|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 777 444433333 3344455556666666666666666555322223333333332 23334568888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 344 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+|...++++.+.++.+..+...++.+|++..
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 8888888888887878888888888887654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2.8e-10 Score=87.88 Aligned_cols=200 Identities=16% Similarity=0.039 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
.+...|.-.|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+..|.+..+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 345567778888888888888888888876 4456678888888888888888888888888877888888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 126 SQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
..|++++|.+.|++..... ...-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887653 22334578888888888888888888888888764 334455667778888888888888
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.+++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877765 67777777788888888888877766666553
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=1.4e-10 Score=89.55 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.-+.+++.+.+.|++..|..-++++.+..| +..+|..+...|-+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 345677889999999999999999999877 46789999999999999999999999999875 4577889999999999
Q ss_pred cCCcCcHHHHHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
.|++++|...|++.... .+.-..+|..+.-+..+.|+++.|...|++.++.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999998876 66667899999999999999999999999999884 4455678889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.++.....+. ++..+.-..|+.-...|+.+.+-++=..+...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988864 78888878888888899999988887777664
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=3.2e-09 Score=93.89 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..|+.++.....+++...+++.+.+....| .+.+.....-.+...|+-++|........+.+ ..+.++|+.+.-.+-.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 456777777777777777777777776544 34555555555566677777777777666544 3456677777666666
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
..++++|++.|.......+.|...|.-+.-.-++.++++.....-.+..+.. +.....|..++.++.-.|++..|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666666666655566666665555555555441 222334555555555556666666665
Q ss_pred HHHHhc
Q 014978 173 KEMEKR 178 (415)
Q Consensus 173 ~~~~~~ 178 (415)
++..+.
T Consensus 167 ~ef~~t 172 (700)
T KOG1156|consen 167 EEFEKT 172 (700)
T ss_pred HHHHHh
Confidence 555543
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=1.8e-10 Score=102.59 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=177.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-----K-IDPDWI-SYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
.|.-..+...+...|...|+++.|+.++++..+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444557777999999999999999999988755 2 133333 3345778899999999999999988752
Q ss_pred -C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----ccc-cChh-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 179 -T--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FAK-MNDA-EYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 179 -~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
| .+.-..+++.|..+|.+.|++++|...++...+. +.. |... .++.+...++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 1112456778888999999999998888876543 111 1222 3667777888999999999998865542
Q ss_pred ---cCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 249 ---SGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK-----G-IKP-CYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 249 ---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
-+.++ ..+++.|...|...|++++|.++++..+.. | ..+ ....++.|...|.+.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 347888999999999999999999887642 1 122 234677888889999999989888887
Q ss_pred hHhcccCCC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 315 AIGSVRKWV---PD-HRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 315 ~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
......... |+ ..+|..|..+|.+.|+++.|.++.+.+..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 655321222 23 36788899999999999999999887763
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=5.2e-11 Score=108.41 Aligned_cols=253 Identities=11% Similarity=0.120 Sum_probs=142.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014978 67 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 145 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 145 (415)
++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-. .+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566666666666666666666666666665 66666544 5556666666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCCCHHH--------------HHHHHHHHHcCCChHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEK---AATTLKEME----KRTCRKNRVA--------------YSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~ 204 (415)
.|.+.||..|..+|...||+.. +.+.+..+. ..|+.....- -...+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666543 111111111 1121100100 111222223334444444
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 284 (415)
+++..+-..... . .+..+++-+.. +....+++........-.|++.++...++.-...|+.+.|..++.+|.+.|
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 444333211100 0 11112332222 223333444433332225788888888888888888888888888888888
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC
Q 014978 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341 (415)
Q Consensus 285 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 341 (415)
+..+.+.|..++-+ .++...++.+++.|.. .|+.|+..|+...+..+..+|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe--~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQE--KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHH--hcCCCCcchhHHHHHhhhcchh
Confidence 87777777777766 6777777788888877 6888888888777766666444
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=4.5e-10 Score=95.84 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=150.4
Q ss_pred cCcHHHHHHHHHHHHhcC-CCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 58 NKKSAEAEALMEKMSECG-FLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+..|.+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 356677777777777532 1121 2446677777888888888888888888777788888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
..|++..+.. +.+..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888763 3345677778888888888888888888888753 433222222233445677888888887655432
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---cC---CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 014978 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI---SG---TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 288 (415)
.|+...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|...|++..+.++ ||
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 2232222 22 22345555443 244444321 11 11345788888888889999999999988887643 35
Q ss_pred HhHHHH
Q 014978 289 YTTWEL 294 (415)
Q Consensus 289 ~~~~~~ 294 (415)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 544443
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.5e-12 Score=78.04 Aligned_cols=49 Identities=39% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555555443
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.2e-12 Score=77.33 Aligned_cols=50 Identities=34% Similarity=0.455 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=1.2e-09 Score=93.16 Aligned_cols=227 Identities=11% Similarity=-0.029 Sum_probs=159.9
Q ss_pred cCCcCcHHHHHHHHhhcCC--C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTS--P--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+..+.++.-+.++....+ | ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777765422 2 24568888889999999999999999999874 45678999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
...|++..+.. +-+..+|..+..++...|++++|++.+++..+..+ +..........+...++.++|...+......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998863 33567788888899999999999999999988643 3322222222345577899999999775543
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh---CCC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT---KGI--KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 322 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 322 (415)
. .++...+ .+.. ...|+...+ ..+..+.+ ..+ .| ....|..+...+.+.|++++|...|+++++ .-
T Consensus 195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~---~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA---NN 266 (296)
T ss_pred C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC
Confidence 2 3332222 2333 335555444 34444432 111 11 335788999999999999999999999988 23
Q ss_pred CCCHHHHHH
Q 014978 323 VPDHRLITA 331 (415)
Q Consensus 323 ~p~~~~~~~ 331 (415)
+||..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 446555444
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=9.6e-09 Score=91.06 Aligned_cols=305 Identities=12% Similarity=0.045 Sum_probs=151.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
..|..+...+...|+++.+.+.+....+.. +++... .......+...|++++|.+.+++..+..|.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 445555555556666666655555544432 122211 1112233455667777777777666555555544442 22
Q ss_pred HHH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 014978 123 ACA----SQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 123 ~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (415)
.+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222 233344444444331 111222 2333445556667777777777777776653 33455566666777777
Q ss_pred CChHHHHHHHHHHHHcccc-cCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-CchH-H--HHHHHHHhcCcH
Q 014978 198 GYKDEVLRIWKKMMSLFAK-MND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-PRVP-N--ILLAAYINRNQL 270 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~ 270 (415)
|++++|...+++....... |+. ..|..+...+...|++++|..++++.......+. .... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 7777777777766654321 121 1244566666777777777777777643221111 1111 1 222222333433
Q ss_pred HHHHHH--H-HHHHhCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccC---CCC---CHHHHHHHHHHHHHcC
Q 014978 271 EMAESF--Y-NRLVTKGI-KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVP---DHRLITAAYNKLEEQG 340 (415)
Q Consensus 271 ~~a~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p---~~~~~~~l~~~~~~~g 340 (415)
..+.++ . ........ ............++...|+.+.|...+..+...... ... ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 322222 1 11111100 001112224555667778888888888777652111 000 1112222233456788
Q ss_pred ChhHHHHHHHHHHHc
Q 014978 341 DIDGAEHLLVTLRNA 355 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~ 355 (415)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877654
No 75
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.5e-10 Score=91.44 Aligned_cols=185 Identities=13% Similarity=0.018 Sum_probs=75.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH-HHHHHhcCCcCcHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM-LNLYISNGQLDKVP 100 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 100 (415)
.+..++.+|++++..-.+..| +....+.|..+|....++..|-+.++++-.. .|...-|... ...+-+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 444455555555544444433 3344444445555555555555555555442 2332222221 23334444555555
Q ss_pred HHHHHHhhcCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 101 QMLQELKKNTSPDVV--TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+...|... ++.. +...-.......+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+-
T Consensus 99 rV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 555444321 1111 11111112223444444444444443221 2233333333344445555555555444433
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
+--.....|+..+ +..+.|+++.|++...+++++|+
T Consensus 174 sGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 174 SGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 2222233343222 22333445555555555544444
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-09 Score=88.05 Aligned_cols=295 Identities=13% Similarity=0.037 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcC--CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDK--MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (415)
....+.++.-.++...|...|-.+... -| |......+...+...|+.++|+..|++....+ |+ ........-.+
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHH
Confidence 344444555555555555554443333 23 67788899999999999999999999988754 43 33344444556
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
.+.|+.+....+...+..........|-.-+......++++.|+.+-++.++.. +.+...|-.-...+...+++++|.-
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHH
Confidence 778999888888877765555566667666777778899999999999988774 4455677777788899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH-HHH-HhcCChHHHHHHHHHHHhc
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI-SSL-VKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~ 248 (415)
.|+...... +-+...|..++..|...|.+.+|..+-+...+. .+.+..+...+. ..| ....--++|.+++++..+.
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 999988762 457889999999999999999998887776654 233555655542 222 2233457899999887765
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
. +.-....+.+...+...|..+.+..+++..+.. .||....+.|.+.+...+.+.+|.+.|..+++
T Consensus 434 ~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 N-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred C-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3 223446677888889999999999999998874 68999999999999999999999999999987
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=3.4e-10 Score=100.82 Aligned_cols=232 Identities=19% Similarity=0.220 Sum_probs=130.5
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhc-------CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKN-------TSPDVVT-YNLWLAACASQNDKETAEKAFLELKKT-----K--IDPDWI 150 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~ 150 (415)
+...|...|++++|..+++...+. ..|.+.+ .+.+...|...+++.+|..+|+++... | .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444455555555555555543322 1222222 234556666666666666666666432 2 111123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccC--
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMN-- 218 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 218 (415)
+++.|..+|.+.|++++|...++...+. | ..|.+ ..++.++..+...+++++|..++....+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 5566666677777776666666554321 1 11222 22455666667777777777776655432 11222
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhcc----C---CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh----CCC
Q 014978 219 --DAEYTCVISSLVKLGEFEKAENIYDEWESIS----G---TGDPRVPNILLAAYINRNQLEMAESFYNRLVT----KGI 285 (415)
Q Consensus 219 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~ 285 (415)
..+++.+...|...|++++|.++++++.... . .-....++.|...|.+.+++.+|.++|.+... .|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2357777777777777777777777665421 1 11233556677777777777777777765432 222
Q ss_pred -CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 286 -KPC-YTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 286 -~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|+ ..+|..|...|...|++++|+++......
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 24677777888888888888877776653
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=1.8e-10 Score=105.05 Aligned_cols=258 Identities=15% Similarity=0.158 Sum_probs=140.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
+.|+..||..+|.-|+..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4555555555555555555555555 5555554444445555555555555555544433 344555555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcC
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 268 (415)
+..+|...||... |+...+ ....+...+...|.-..-..++..+.-. +.-|| -...+......|
T Consensus 89 Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd---a~n~illlv~eg 153 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD---AENAILLLVLEG 153 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh---HHHHHHHHHHHH
Confidence 5555555555543 222111 1112222333333333333333322111 11111 122333444556
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
.++.+.+++..+...... . ++..+++-+..... -..++....... .+ .|++.++..++.+-..+|+.+.|..+
T Consensus 154 lwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl-~e-~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSL-VE-APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHh-hc-CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 666666665544321110 1 11112444333322 233333333331 23 79999999999999999999999999
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhcc
Q 014978 349 LVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSE 404 (415)
Q Consensus 349 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~ 404 (415)
+.+|++.|.+ ..+-|-.|+-+ .++. ...++..|+..|+.|+.+|+ ..+..+.+
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9999999988 55555555544 4443 57889999999999999999 45555555
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=1.4e-08 Score=89.98 Aligned_cols=298 Identities=9% Similarity=-0.010 Sum_probs=188.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-Ccch---HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDT---CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+...|+.+.+.+.+.......| +... .......+...|++++|.+.+++..+.. +.+...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHH
Confidence 334455666778887777776555433 3222 2233445677899999999999988764 334434442 222222
Q ss_pred ----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 93 ----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+....+.+.+.......+........+..++...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 4455555555554222245555566677889999999999999999999885 55667888999999999999999
Q ss_pred HHHHHHHHhcCC-CCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC-hhhH-H--HHHHHHHhcCChHHHHHH
Q 014978 169 ATTLKEMEKRTC-RKNR--VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEY-T--CVISSLVKLGEFEKAENI 241 (415)
Q Consensus 169 ~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~~~a~~~ 241 (415)
...+++...... .|+. ..|..+...+...|++++|..++++.......+. .... + .++.-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 999999887531 1232 3455788889999999999999999865432112 1111 1 223333444544333333
Q ss_pred --HHHHHhccCCCCCchH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--------CHhHHHHHHHHHHhcCCHHHHH
Q 014978 242 --YDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP--------CYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 242 --~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
+........+.....+ ...+.++...|+.+.|...++.+......+ ..........++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 2111111111111222 245667778899999999999886532110 1112223334566899999999
Q ss_pred HHHHHhHh
Q 014978 310 ECFKKAIG 317 (415)
Q Consensus 310 ~~~~~~~~ 317 (415)
+.+..++.
T Consensus 328 ~~L~~al~ 335 (355)
T cd05804 328 ELLGPVRD 335 (355)
T ss_pred HHHHHHHH
Confidence 99999876
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.6e-08 Score=87.71 Aligned_cols=347 Identities=14% Similarity=0.021 Sum_probs=216.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhc
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISN 93 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 93 (415)
...+.+....|+++.|+..|..+....| +...|+.-..+|...|++++|++=-.+.++. .|+ +..|.....++.-.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 3567788899999999999999888754 7788999999999999999999877777765 355 56788899999999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-------------------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK------------------------------------------- 130 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------- 130 (415)
|++++|+..|.+-.+..|.|...++.+..++......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999998877787888888777776221000
Q ss_pred -----HHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 014978 131 -----ETAEKAFLELK--------KTK-------IDP------------D----------WISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 131 -----~~a~~~~~~~~--------~~g-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a 168 (415)
....+..-.+. ..| ..| | ..-...+.+...+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00000000000 000 001 0 01123455555666667777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH-------HHHHHHHhcCChHHHHHH
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT-------CVISSLVKLGEFEKAENI 241 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~ 241 (415)
.+.+....... -+..-++....+|...|.+.++...-+...+.|-. ...-|+ .+..++.+.++++.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777666653 34444555666777777777766666665555432 111222 233355556777777777
Q ss_pred HHHHHhccCCCCCchH-------------------------HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 014978 242 YDEWESISGTGDPRVP-------------------------NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 296 (415)
Q Consensus 242 ~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 296 (415)
|.+.......|+...- ..-...+.+.|++..|.+.|.+++... +-|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 7765543333322110 011344556677777777777777664 22566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
-+|.+.|.+..|+.-.+..++. -++....|..=..++....+++.|.+.|++..+.++.+......+.++..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 7777777777777777776661 22233445444555555667777777777777777665555444444444
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2.8e-07 Score=81.99 Aligned_cols=360 Identities=11% Similarity=0.092 Sum_probs=192.8
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 21 AQAQALQTRARENFFENLPDKMR---GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
...++|++..-...|+.+...-| ...+|...+......+-++.+..+++..++.. | ..-+-.+..++..++++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchH
Confidence 44678888888888888776644 45678888888888888888888888887742 3 33566677777888888
Q ss_pred cHHHHHHHHhhc-------CCCCHhH--------------------------------------HHHHHHHHHhcCCHHH
Q 014978 98 KVPQMLQELKKN-------TSPDVVT--------------------------------------YNLWLAACASQNDKET 132 (415)
Q Consensus 98 ~a~~~~~~~~~~-------~~~~~~~--------------------------------------~~~l~~~~~~~~~~~~ 132 (415)
+|.+.+..+... .+.+-.. |.+|++.|.+.|.++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 887777654321 2222222 5555555666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhcC-----------
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMEL----------------------PEKAATTLKEMEKRT----------- 179 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~----------- 179 (415)
|..+|++.... ..+..-|..+.+.|..-.. ++-....|+.+...+
T Consensus 267 arDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 267 ARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 66666555544 2334444444444433110 111122222222110
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
-+.++..|..-.. ...|+..+....|.++.+. +.|.. ..|..+...|...|+.+.|..+|++..+...+.-
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 0112222222222 2234555556666665554 22221 2466667777777777777777777665432211
Q ss_pred ---CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC----------C-------CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 254 ---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK----------P-------CYTTWELLTWGYLKKGQMEKVLECFK 313 (415)
Q Consensus 254 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~ 313 (415)
..+|..-...-.++.+++.|.++.+......-. | +...|...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 123333344444556666777766665432111 0 11223334444445566667777777
Q ss_pred HhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhc-C-CC---cHHHHHHHHh
Q 014978 314 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--EIYNSLLRTYAKA-G-KM---PLIIVERMQK 386 (415)
Q Consensus 314 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-g-~~---a~~~~~~m~~ 386 (415)
++++. .+. ++.........+..+.-++++.+++++-+..-+.|. ..|+..+.-+.+. | .- +..+|+...+
T Consensus 502 riidL--ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 502 RIIDL--RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHH--hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 77662 222 222222222234444556677777766655444432 6777777776652 2 11 4667777776
Q ss_pred CCCCCCH
Q 014978 387 DNVQMDA 393 (415)
Q Consensus 387 ~~~~p~~ 393 (415)
|.+|..
T Consensus 579 -~Cpp~~ 584 (835)
T KOG2047|consen 579 -GCPPEH 584 (835)
T ss_pred -cCCHHH
Confidence 555443
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=6.3e-10 Score=97.08 Aligned_cols=232 Identities=13% Similarity=0.083 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
|.-.|..|..+.+.|++.+|.-.|+.+....| +..+|..|......+++-..|+..+++..+.+ +.+......|.-.|
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 34578999999999999999999999988877 78999999999999999999999999999875 34667777788889
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHH-------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhc
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWL-------AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...|.-..|+..|+......++-...-..-. ........+....++|-++. ..+..+|+.++..|.-.|.-.
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 9999999999999887543222111000000 11112223344455555544 444447788888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-hhHHHHHHHHHhcCChHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
|++++|...|+.+.... |-|...||.|...++...+.++|+..|.+.++. .|+- .+...|.-+|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 89999999998888763 456778898888888888889999999888884 4443 2444455578888888888887
Q ss_pred HHHHHh
Q 014978 242 YDEWES 247 (415)
Q Consensus 242 ~~~~~~ 247 (415)
|-.+..
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 776543
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=5.2e-07 Score=80.32 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=184.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcC----------------------cHHHHHHHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNK----------------------KSAEAEALMEKMSE 73 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~ 73 (415)
..++--|.+.|.++.|..+|++.........-|..+.++|++.. +++-...-|+.+..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 34444567888888888888887765334444444444443211 11222223333332
Q ss_pred cC-----------CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH------hHHHHHHHHHHhcCCHHHHHHH
Q 014978 74 CG-----------FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV------VTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 74 ~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
++ -+.++..|..-+. ...|+..+-...|.+..+.+.|.. ..|..+...|-..|+++.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 21 0112222222221 224556677777777766533322 3477777888888888888888
Q ss_pred HHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCC------CHHHHHHHHHHHHc
Q 014978 137 FLELKKTKIDPD---WISYSTLTSLYIKMELPEKAATTLKEMEKR-----------TCRK------NRVAYSSLLSLYTN 196 (415)
Q Consensus 137 ~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~ 196 (415)
|++..+-..+.- ..+|......=.+..+++.|+++++....- +.++ +...|...+..--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 888776643322 335666666666677777777777665431 0111 23345555666566
Q ss_pred CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHh---cCcHHH
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYIN---RNQLEM 272 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~ 272 (415)
.|-++....+|+++.+..+.......| ....+....-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677777777777776654431111111 111223344455555555543332112221 234443333332 123555
Q ss_pred HHHHHHHHHhCCCCCCHh--------------------------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 273 AESFYNRLVTKGIKPCYT--------------------------------------TWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~--------------------------------------~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
|..+|++.++ |++|... .|+..|.-....=.+.....+|++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 5555555555 3333221 233333222222222233334444
Q ss_pred hHhcccCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 014978 315 AIGSVRKWVPDHRL---ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMPLIIVERMQ 385 (415)
Q Consensus 315 ~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~a~~~~~~m~ 385 (415)
+++ .-|+... .......=.+.|.++.|+.++....+.-.+ ++..|.+.=..-.+.|+ .+.+++|.
T Consensus 648 aIe----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn--edT~keML 717 (835)
T KOG2047|consen 648 AIE----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN--EDTYKEML 717 (835)
T ss_pred HHH----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 443 1233322 122223345678899999998888775444 56788888888888887 44444443
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=3.6e-07 Score=75.55 Aligned_cols=358 Identities=12% Similarity=0.085 Sum_probs=191.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
...-.+....++..|+.+++-....... ..+--.+..++.+.|++++|...|..+.+.. .++...+..+..++.-.|
T Consensus 27 P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 27 PELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred chHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 3455777888888898888876654321 2233445667778899999999888877654 456666666666666667
Q ss_pred CcCcHHHHHHHHhhc--------------------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 95 QLDKVPQMLQELKKN--------------------------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
.+.+|..+-.+..+. ......---+|.......-.+.+|++++.+.... .|+
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 777776655432210 0111122223444444445677788888877765 344
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CChHHH--HH----------HHHHHHHc
Q 014978 149 WISYST-LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM--GYKDEV--LR----------IWKKMMSL 213 (415)
Q Consensus 149 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a--~~----------~~~~~~~~ 213 (415)
-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+. |+..+. .+ ..+.+.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 444443 445566777777777777766654 233344444333222221 211111 00 11111111
Q ss_pred c------------cccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhc-------
Q 014978 214 F------------AKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA--YINR------- 267 (415)
Q Consensus 214 ~------------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~------- 267 (415)
+ +-|. +..-..++-.|.+.+++.+|..+.+++ .|.+ .+..++.+ +...
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----~Ptt-P~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----DPTT-PYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----CCCC-hHHHHHHHHHHHHhhhhcCcH
Confidence 0 0010 011223444567778888887777654 2221 11112221 1222
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
..+.-|.+.|+..-+.+...|.. --.++...+.-..++++.+.++....+ -+..|......+.++.+..|++.+|+
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s---YF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES---YFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchhhhHHHHHHHHhcChHHHH
Confidence 23555666666554444333222 223444555555667777777776655 23344444445677777788888888
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHhcCCCcHHHHHHHHhCC
Q 014978 347 HLLVTLRNAGHVSTEIYN-SLLRTYAKAGKMPLIIVERMQKDN 388 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~a~~~~~~m~~~~ 388 (415)
++|-++....+.+..+|. .|.++|.+++++.++ ++.|.+.+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA-W~~~lk~~ 455 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA-WDMMLKTN 455 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH-HHHHHhcC
Confidence 888777666656665554 445566666665322 33444433
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=6.6e-07 Score=79.73 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=161.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
-.|+.+..-|+-++|...-.......+ +.+.|+.+.-.+....++++|++.|......+ +.|...|.-+.-.-++.++
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 456777888999999988888777654 77889999888888999999999999998876 4566777777777778889
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLT------SLYIKMELPEKA 168 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a 168 (415)
++........+.+..+.....|..++.++.-.|+...|..++++..+.. ..|+...+.... ....+.|.+++|
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 9988888888887777788889999999999999999999999888664 246666654433 334557888888
Q ss_pred HHHHHHHHhcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH-HHHHHhcCChHHHH-HHHHHH
Q 014978 169 ATTLKEMEKRTCRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV-ISSLVKLGEFEKAE-NIYDEW 245 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~-~~~~~~ 245 (415)
++.+..-... ..|... -..-...+.+.+++++|..++..++..+ ||..-|... ..++.+..+.-++. .+|...
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8887765543 123222 2344567778888999999998888754 455544433 33333333333333 455444
Q ss_pred H
Q 014978 246 E 246 (415)
Q Consensus 246 ~ 246 (415)
.
T Consensus 281 s 281 (700)
T KOG1156|consen 281 S 281 (700)
T ss_pred h
Confidence 3
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=3e-07 Score=83.45 Aligned_cols=363 Identities=15% Similarity=0.030 Sum_probs=229.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHH-hcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYI-SNG 94 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~ 94 (415)
..++....|+++.+.+.|+....-. -....|+.+...+...|.-..|+.+++......-.|+ ...+-..-..|. +.+
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 3446678899999999998876542 3567788888888888888888888887654322233 333332233333 355
Q ss_pred CcCcHHHHHHHHhhc-----CCCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKN-----TSPDVVTYNLWLAACASQ-----------NDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
..++++++-.++... ..-....|..+.-+|... ....++++.+++..+.+ +.|+.....+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 666666666665441 222333444444444321 12345777777777664 2233333334445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-c--------------C----h
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-M--------------N----D 219 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~----~ 219 (415)
|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+........ . | .
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 6666778888888887777654567777777777777778888888777766543111 0 0 0
Q ss_pred hhHHHHHHHHH------h---c--------------CChHHHHHHHHHH-----------------HhccCC--CC----
Q 014978 220 AEYTCVISSLV------K---L--------------GEFEKAENIYDEW-----------------ESISGT--GD---- 253 (415)
Q Consensus 220 ~~~~~l~~~~~------~---~--------------g~~~~a~~~~~~~-----------------~~~~~~--~~---- 253 (415)
.|...++...- . . ++..++......+ ...... |+
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 01111111111 0 0 0111111111111 000111 22
Q ss_pred --CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HHHHH
Q 014978 254 --PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLIT 330 (415)
Q Consensus 254 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~ 330 (415)
...|......+.+.++.++|...+.+..... .-....|......+...|.+.+|.+.|..+.. +.|+ +....
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~ 722 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHH
Confidence 2245677788889999999998888877642 23556777777888899999999999999987 5555 46778
Q ss_pred HHHHHHHHcCChhHHHH--HHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 331 AAYNKLEEQGDIDGAEH--LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
++...+.+.|+...|.. ++..+.+.++.+...|-.+...+-+.|+. |...|..-.+
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 89999999999888888 99999999999999999999999999998 3445554433
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=2.5e-06 Score=77.74 Aligned_cols=340 Identities=13% Similarity=0.040 Sum_probs=231.0
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCCHhHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLW 120 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l 120 (415)
.++..|..+.-+....|+++.+.+.|++...-- .-....|+.+...+...|.-..|..+++.-... .+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 578889999999999999999999999887532 345677888988999999999999999886554 35555555555
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCH
Q 014978 121 LAACA-SQNDKETAEKAFLELKKT--KI--DPDWISYSTLTSLYIKM-----------ELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 121 ~~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
...|. +.+..++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.+ +.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 55554 457778888877777662 11 12334455555555432 23467889999998765 2333
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCC-----------
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGTG----------- 252 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~----------- 252 (415)
.....+.--|+..++.+.|.+..++..+.+..-+...|..+...+...+++.+|+.+.+..... +...
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333344556777899999999999999866667888998888889999999999998876542 2100
Q ss_pred -------CCchHHHHHHHHHh---------c--------------CcHHHHHHHHHHH--------HhC---------CC
Q 014978 253 -------DPRVPNILLAAYIN---------R--------------NQLEMAESFYNRL--------VTK---------GI 285 (415)
Q Consensus 253 -------~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~--------~~~---------~~ 285 (415)
...|...++..+-. . .+..++.+....+ ... .+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 01111122221110 0 0111111111110 001 11
Q ss_pred C--CC------HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 286 K--PC------YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 286 ~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
. |+ ...|......+.+.+..++|...+.++.. ..+-....|......+...|..++|.+.|......+|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 2 23 12455667778899999999999998876 3445667777777888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC--cHH--HHHHHHhC
Q 014978 358 VSTEIYNSLLRTYAKAGKM--PLI--IVERMQKD 387 (415)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~--a~~--~~~~m~~~ 387 (415)
..+....++..++.+.|+. +.. ++..+.+.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 9999999999999999977 333 45554443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=2e-09 Score=90.55 Aligned_cols=251 Identities=17% Similarity=0.141 Sum_probs=108.8
Q ss_pred HHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
+.-.|.+..++.-.+ .... .+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334455555554443 1111 1122333444555555666554332 2222222 44444444443333322333334
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 169 ATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333332222121 1222222224444556666665555432 1333444555555666666666666666554
Q ss_pred ccCCCCCchHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 248 ISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
.+ +..+...++.++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.. .-+
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~ 232 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDP 232 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-C
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hcc
Confidence 32 22233334333332 22455666666665443 234555555555556666666666666665544 122
Q ss_pred CCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCC
Q 014978 324 PDHRLITAAYNKLEEQGDI-DGAEHLLVTLRNAGHV 358 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 358 (415)
-+..++..++.+....|+. +.+.+.+.++....|.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3444555555555555555 4455555555555443
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=3.2e-09 Score=89.31 Aligned_cols=148 Identities=16% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH----HhcCC
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL----VKLGE 234 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~ 234 (415)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++ ...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555554444321 133333344445555555555555555554421 11 1222222222 11224
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHH
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFK 313 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 313 (415)
+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+. -++.+...++......|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 233444455555555555555555555555544321 1334444444444444544 34444555
Q ss_pred HhHh
Q 014978 314 KAIG 317 (415)
Q Consensus 314 ~~~~ 317 (415)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=6.4e-07 Score=73.77 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHh
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYIS 92 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 92 (415)
.+-.|-.+...|++.+|+..|..+.+-.|+. .++-.-...|...|+-.-|+.-+...++. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 4555666677788888888888887743322 22333355677788888888888777774 4653221 122345777
Q ss_pred cCCcCcHHHHHHHHhhcCCCC---HhH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPD---VVT------------YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~---~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
+|.++.|..-|+.+....+.+ ... ....+..+...|+...|+.....+++.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 888888888888877653322 111 1223334555677777777777777663 556677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh----HHHH---H----
Q 014978 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE----YTCV---I---- 226 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---~---- 226 (415)
+|...|++..|+.=+....+.. ..++.++.-+-..+...|+.+.++...++.++. .||... |..+ .
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 7777777777777666665543 234555555666677777777777777777663 334321 1111 1
Q ss_pred --HHHHhcCChHHHHHHHHHHHhccCCCCCchH---HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHH
Q 014978 227 --SSLVKLGEFEKAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPC-YTTWELLTWGYL 300 (415)
Q Consensus 227 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 300 (415)
......++|.++..-.+...+..+......+ ..+-.++...+++.+|++.-.+.++- .|| ..++.--..+|.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHh
Confidence 1122334455555555555444322122222 22333344455566666655555553 332 445555555555
Q ss_pred hcCCHHHHHHHHHHhHh
Q 014978 301 KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~ 317 (415)
-...++.|+.-|+.+.+
T Consensus 353 ~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 55566666666666554
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=4.7e-07 Score=90.73 Aligned_cols=355 Identities=13% Similarity=0.037 Sum_probs=176.6
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
..+...|++.+|...+..+.....-..............|++..+...++.+.......++.........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34455666666666555554321011111222233445666666666665542211112222333344455566777777
Q ss_pred HHHHHHHhhcCC-------CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 014978 100 PQMLQELKKNTS-------PD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPE 166 (415)
Q Consensus 100 ~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~ 166 (415)
...+........ +. ......+...+...|++++|...+++..+.-...+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766543311 11 111222334455677777777777776553111111 23345555666677777
Q ss_pred HHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----ccc--c-ChhhHHHHHHHHHhcCC
Q 014978 167 KAATTLKEMEKRTC---RKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK--M-NDAEYTCVISSLVKLGE 234 (415)
Q Consensus 167 ~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~ 234 (415)
+|...+++.....- .+. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 77777776653210 111 223444556666777777777777665543 111 0 11223344455566677
Q ss_pred hHHHHHHHHHHHhccC--CC--CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHH-----HHHHHHHhcCC
Q 014978 235 FEKAENIYDEWESISG--TG--DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWE-----LLTWGYLKKGQ 304 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~-----~l~~~~~~~~~ 304 (415)
+++|...+.+...... .+ ....+..+...+...|+.+.|.+.+......... .....+. ..+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 7777777776544211 11 1223334555666677777777777666431000 0001010 11233344667
Q ss_pred HHHHHHHHHHhHhcccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHhcCC
Q 014978 305 MEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHV--STEIYNSLLRTYAKAGK 375 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~ 375 (415)
.+.|..++...... ...... ..+..+..++...|++++|...++++... +.. ...+...+..++.+.|+
T Consensus 669 ~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 77777776554331 111110 11234555666777777777777766543 222 12345556666667776
Q ss_pred C
Q 014978 376 M 376 (415)
Q Consensus 376 ~ 376 (415)
.
T Consensus 747 ~ 747 (903)
T PRK04841 747 K 747 (903)
T ss_pred H
Confidence 5
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=4.1e-07 Score=74.85 Aligned_cols=307 Identities=13% Similarity=0.090 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHhcCCcCcHHHHHHHHhhcCCCCH-hHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML---NLYISNGQLDKVPQMLQELKKNTSPDV-VTYNLW 120 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l 120 (415)
+.----+...+...|++..|+.-|....+. |+..|..+. ..|...|+...|+.-+.+..+. +||- .+--.-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQR 112 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHh
Confidence 344456778888899999999999988874 334455443 5688889999999988888765 4443 333445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDW----ISY------------STLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
...+.++|.++.|..=|+..++.. |+. ..+ ...+..+...|+...|+.....+.+.. +-|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 567889999999999999999874 321 111 233445666789999999998888762 4467
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc-hHHH---H
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-VPNI---L 260 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~---l 260 (415)
..|..-..+|...|++..|+.=++...+.... +..++..+-..+...|+.+.++..+++..+. .||-. +|.. +
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 77777888999999999998888877665433 5556666777788899999999999888875 34433 2221 1
Q ss_pred ---------HHHHHhcCcHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HH
Q 014978 261 ---------LAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HR 327 (415)
Q Consensus 261 ---------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~ 327 (415)
+......+++.++....+...+........ .+..+-.++...+++.+|++...+.+. +.|+ ..
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~----~d~~dv~ 342 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD----IDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----cCchHHH
Confidence 223344566777777777776654331222 333455566778889999999999887 4554 78
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 366 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 366 (415)
++.--..+|.-...++.|+.-|+...+.+..+..+-.-+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888888889888999999999999998888766554433
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.6e-08 Score=87.26 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34455555555555555442 3334455555555555555555555555555442 223444444555555555555555
Q ss_pred HHHHHHHHcccc-----c---ChhhHHHHHHHHHhcCChHHHHHHHHHHH-hccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 205 RIWKKMMSLFAK-----M---NDAEYTCVISSLVKLGEFEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 205 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
..++.-+...++ + +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555544332110 0 0000000 01111122223333333333 22323555566666666666666666666
Q ss_pred HHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 276 FYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 276 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.|+..+.. +| |..+||.|...++...+.++|+..|+++++ ++|+. .....|.-+|...|.+++|...|-.++
T Consensus 452 cf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666653 23 455666666666666666666666666655 45543 344555556666666666666655444
Q ss_pred HcCCC----------CHHHHHHHHHHHHhcCCC
Q 014978 354 NAGHV----------STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 354 ~~~~~----------~~~~~~~l~~~~~~~g~~ 376 (415)
..... +..+|.+|=.++.-.++.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 32111 124566555555555544
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.7e-06 Score=74.34 Aligned_cols=353 Identities=13% Similarity=0.049 Sum_probs=210.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 129 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (415)
+=+..+...|++++|.+...+++..+ +.+...+..-+-++++.+++++|+.+.+.-... ..+...+-.-+-+..+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHccc
Confidence 33567788999999999999999876 556677778888899999999999665543211 1111111233556678999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------------------------
Q 014978 130 KETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---------------------------- 180 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------- 180 (415)
.++|+..++ |..+ +..+...-...+.+.|++++|+.+|+.+.+++.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 999999998 2233 334666777889999999999999999866421
Q ss_pred CCCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHcc-------cccChh-------hHHHHHHHHHhcCChHHHHHHHH
Q 014978 181 RKNRVAYSS---LLSLYTNMGYKDEVLRIWKKMMSLF-------AKMNDA-------EYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 181 ~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.| ..+|.. ....+...|++.+|+++++...+.+ -.-+.. .-..+.-.+-..|+-.+|..++.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 11 113332 3345667899999999999883211 110011 12234445677899999999999
Q ss_pred HHHhccCCCCCchH----HH-----------------------------------------------HHHHHHhc-----
Q 014978 244 EWESISGTGDPRVP----NI-----------------------------------------------LLAAYINR----- 267 (415)
Q Consensus 244 ~~~~~~~~~~~~~~----~~-----------------------------------------------l~~~~~~~----- 267 (415)
.+.+.++ +|.... |. ++..|...
T Consensus 249 ~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 249 DIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8887653 232110 00 11111100
Q ss_pred ---------------------------CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc-
Q 014978 268 ---------------------------NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV- 319 (415)
Q Consensus 268 ---------------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 319 (415)
.....+.+++...-+....-...+...++......|+++.|++++....+..
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 0112222222222222111112233445556667788888888777221100
Q ss_pred ---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 320 ---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HVS----TEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 320 ---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
..+.-.+.+...+...+.+.++.+.|..++.+..+.- ... ..++..+...-.+.|+- |..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 1233344555666666777777777777776665421 111 12333444444455665 57778888775
Q ss_pred CCCCCHHHH-HHHHHhccCCcccccc
Q 014978 388 NVQMDAETQ-KVLKITSEMPVSEVSS 412 (415)
Q Consensus 388 ~~~p~~~t~-~~l~~~~~~~~~~~~~ 412 (415)
. ++|..+. .++.+++...++.+..
T Consensus 488 n-~~d~~~l~~lV~a~~~~d~eka~~ 512 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARLDPEKAES 512 (652)
T ss_pred C-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 4 3555555 7889999888776553
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.5e-06 Score=87.15 Aligned_cols=339 Identities=10% Similarity=0.052 Sum_probs=218.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCC--CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------CCCc--ccHHHHHHH
Q 014978 20 VAQAQALQTRARENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF------LKCP--LPYNHMLNL 89 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~ 89 (415)
......|+++.+..+++.++... .++.........+...|+++++...+......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456677888888887765331 2333344455566788999999999988754310 0111 111222345
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP-D----VVTYNLWLAACASQNDKETAEKAFLELKKTKI---DP--DWISYSTLTSLY 159 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~l~~~~ 159 (415)
+...|++++|...++......+. + ....+.+...+...|++++|...+++...... .+ ...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56789999999999987654222 2 13456677778889999999999988864311 11 123456677788
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc--cccC--hhhHHHHHHH
Q 014978 160 IKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN--DAEYTCVISS 228 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 228 (415)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 211 1 22334456667778899999999998876531 1111 2244556667
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCC-CchH-----HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHH
Q 014978 229 LVKLGEFEKAENIYDEWESISGTGD-PRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCY---TTWELLTWGY 299 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~ 299 (415)
+...|+.+.|...+........... ...+ ...+..+...|+.+.|..++............ ..+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7889999999999988755311111 1111 11224445678999999998776542211111 1134566778
Q ss_pred HhcCCHHHHHHHHHHhHhccc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 300 LKKGQMEKVLECFKKAIGSVR--KWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
...|++++|...+.++..... +..++ ..+...+..++.+.|+.++|...+.+..+....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999999999998876321 22221 245666777899999999999999998875433
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.2e-07 Score=74.02 Aligned_cols=292 Identities=9% Similarity=-0.016 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+.+++..+.+..+++.|++++....++. +.+......+..+|-...++..|.+.++++....|.-...----...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444555555566666666666555543 224445555555666666666666666665544333332222334455556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLT--SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
+.+..|+++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666555432 1111111111 11233455555666655554322 33333344444455666666666
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC----------------------------chH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP----------------------------RVP 257 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------------~~~ 257 (415)
-|....+.+---....|+..+ +..+.|+++.|.+...++.+.|+...+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 666655542222333444333 344556666666666665554432110 123
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTK-GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
|.-...+.+.|+.+.|.+.+..|.-+ .-..|+.|...+.-.-. .+++.+..+-+.-.+.. -+....||..++-.|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~---nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ---NPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc---CCCChHHHHHHHHHH
Confidence 44444555566666666655555321 11224444443322211 22333333333333331 122345555555555
Q ss_pred HHcCChhHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVT 351 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~ 351 (415)
++..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 555555555554443
No 97
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=9.4e-07 Score=75.56 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
..+-..+...++.++|+.++.++.+..|.+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 333344555666777777777766666666666666666666666 4567777777766653 33444555554445555
Q ss_pred CCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc---CCh--
Q 014978 163 ELP--EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL---GEF-- 235 (415)
Q Consensus 163 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~-- 235 (415)
|+. ++++.+++++.+.. +-+..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 542 45566666666553 345666666666666666677777777776665543 444555444443333 111
Q ss_pred --HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 236 --EKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 236 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
+.......++.... +-|...|+.+...+... ++..+|.+.+.+....++ .+......|+..|+
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 23444444444443 23555555555555442 222344455544443321 13334444444443
No 98
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=6.6e-07 Score=76.50 Aligned_cols=213 Identities=8% Similarity=0.012 Sum_probs=117.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+..|.+..+|+...-++.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 344444555666677777777766643 223345555555555555 456677777666666666666666665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCh--
Q 014978 128 NDK--ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM---GYK-- 200 (415)
Q Consensus 128 ~~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 200 (415)
|+. +++..+++++.+.. +-|..+|+....++.+.|+++++++.++++.+.+ +-+...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 542 55666666666554 3455666666666666677777777777776654 23455555555444433 222
Q ss_pred --HHHHHHHHHHHHcccccChhhHHHHHHHHHhc----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 201 --DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----GEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 201 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
++.+++..+++...+. +...|+-+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555554332 445566555555542 23344555555554432 2244445555555553
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4.4e-06 Score=69.32 Aligned_cols=352 Identities=13% Similarity=0.043 Sum_probs=182.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
+.-+....++..|+.+++.-...+-.....+---+..++.+.|++++|...+..+.....++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 56667788999999998876654422222333345577888999999999999988777788888888888888889999
Q ss_pred HHHHHHHHHHhCCC--------------C-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 132 TAEKAFLELKKTKI--------------D-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 132 ~a~~~~~~~~~~g~--------------~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
+|..+-....+..+ . .+..---+|.......-.+.+|++++.+.... .|+...
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIA 186 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhhh
Confidence 98887654422100 0 00011112233333333456666666666544 234333
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH--------------HhccC-
Q 014978 187 YSSL-LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--------------ESISG- 250 (415)
Q Consensus 187 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------------~~~~~- 250 (415)
.|.. .-+|.+..-++-+.++++-..+..+. +....+....-..+.=.-..|..-.+.+ .++++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 3332 23445555566666666655554221 2223332222111111101111111111 11100
Q ss_pred -----------CC-----CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-------CHHH
Q 014978 251 -----------TG-----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-------QMEK 307 (415)
Q Consensus 251 -----------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~ 307 (415)
-| -+..-..|+-.|.+.+++.+|..+.+++.-. .| .-|..-.-.+...| ...-
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP--~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TP--YEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--Ch--HHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 00 0112223444566677777777666554321 12 22211111222222 2344
Q ss_pred HHHHHHHhHhcccCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERM 384 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m 384 (415)
|.+.|+..-+ .+..-|. .--.++..++.-..++++.+-.+..+...-..+...--.+.++++..|++ +.++|-..
T Consensus 342 AqqffqlVG~--Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 342 AQQFFQLVGE--SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHhcc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 5555554333 2222111 11223444444455678888888887776555555556788889999988 46666555
Q ss_pred HhCCCCCCHHHH-HHHHHhccCC--ccccccc
Q 014978 385 QKDNVQMDAETQ-KVLKITSEMP--VSEVSSI 413 (415)
Q Consensus 385 ~~~~~~p~~~t~-~~l~~~~~~~--~~~~~~~ 413 (415)
....+ -|..+| .+|..|.-.. ++-++++
T Consensus 420 s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 420 SGPEI-KNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred cChhh-hhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 44433 455566 5555554322 5555543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=4.4e-08 Score=81.24 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cc---cHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PL---PYNH 85 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~---~~~~ 85 (415)
..+..+..+...|++++|...|+.+....|+. .++..+..++...|++++|...++++.+.. |+ .. ++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence 34555666666666666666666665554432 345556666666666666666666666543 22 21 2333
Q ss_pred HHHHHHhc--------CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 86 MLNLYISN--------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 86 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
+..++... |++++|.+.|+.+....|.+...+..+.......+ .. ......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----------~~--------~~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----------RL--------AGKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----------HH--------HHHHHHHHH
Confidence 33334332 45556666666655544444333322221110000 00 001124567
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 158 LYIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
.+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78899999999999999887521 1234678888999999999999999988887653
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.9e-06 Score=74.19 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=214.6
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
.+.+..|+++.|+..|.+.+... ++|...|..-..+|...|++++|++=-.+-++..|.-...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45667899999999999999876 55888899999999999999999888777776667778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------------CCH-------HHH-HHHHHHHHhc---------
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKM-----------------ELP-------EKA-ATTLKEMEKR--------- 178 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----------------~~~-------~~a-~~~~~~~~~~--------- 178 (415)
|+..|.+-++.. +.+...++-+..++... +++ +.+ ..++..+.+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999988773 44455566666555211 000 000 0000000000
Q ss_pred -----------------------------CCCC------------C----------HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 179 -----------------------------TCRK------------N----------RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 179 -----------------------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
+..| | ..-...+.++..+..+++.+++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0011 0 011344555666666777777777
Q ss_pred HHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH-------HHHHHhcCcHHHHHHHHHHH
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL-------LAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~ 280 (415)
....+.. -+..-++....++...|.+.++...-....+.|.. ....|+.+ ..+|.+.++.+.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7776654 23334555566677777777766666665554422 22223322 33555566777787777776
Q ss_pred HhCCCCCCHhHHH-------------------------HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 281 VTKGIKPCYTTWE-------------------------LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 281 ~~~~~~p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
+.....|+..+-. .-...+.+.|++..|+..|.+++. ..+-|...|..-.-+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAAC 401 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHH
Confidence 6543333332211 113446677888888888888877 235567778888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhc
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITS 403 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~ 403 (415)
|.+.|.+..|+.-.+...+.++.....|..=..++....+| +.+.|.+-++.+ |+..-+ .-+..|.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 88888888888888888777776655555555555555555 344444433332 444444 3444443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=6.6e-07 Score=86.33 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDP---DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
|.+...|-..|......++.+.|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444444555555555555555555555554432 1110 11133444444444444444555555554431 11223
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHH
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYI 265 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 265 (415)
|..|...|.+.+.+++|.++++.|.+..- -....|...+..+.+..+-+.|..++.+..+.-+. -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 44455555555555555555555554422 23334555555555555555555555544442111 02223333344444
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.|+.+.+..+|+..+...+ --...|+..+..-.+.|+.+.+..+|++++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 45555555555555444321 1233455555555555555555555555555
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=8.5e-08 Score=86.38 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=183.9
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
..-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +||+..|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 334556778888999999999998874 6788899999999999999999988885 889999999998888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.-.-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+..+ .-..+|.....+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 222333334457899999999998777543 255678888888889999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 320 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 320 (415)
.|....... +.+...||.+..+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++....
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~- 617 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR- 617 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh-
Confidence 999887754 3367789999999999999999999999999876 4456677788888889999999999999988742
Q ss_pred CCCCCHHHHHHHHHHHH
Q 014978 321 KWVPDHRLITAAYNKLE 337 (415)
Q Consensus 321 ~~~p~~~~~~~l~~~~~ 337 (415)
...-|......++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 22235555555554443
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=6.5e-07 Score=85.27 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 265 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (415)
.+..+..+|-+.|+.+++..+|+++.+..+. +..+.+.+...+... ++++|..++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444555555555555555555555554422 444455555555555 555555555544332 33
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHH
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 345 (415)
..+++..+.++|.++.... |+ +.+.-..+.+.+..+ .+..--..++..+...|...++++++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGH-REFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4445555555555555432 11 122222222333221 12233345566667778888999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-cHHHHH-HHHhCCCCCC
Q 014978 346 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM-PLIIVE-RMQKDNVQMD 392 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-a~~~~~-~m~~~~~~p~ 392 (415)
..+++.+.+..+.+..+..-++.+|. +.+ +...++ .++..|+.-+
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccccC
Confidence 99999999999998888999999888 555 333333 2333444433
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=1.1e-06 Score=84.94 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcCCChHHHH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-----NRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
++.|.++-+..+.. +-+...|-..|......++.++|.++.+++... +.+ -...|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 34445544444443 445567777888888888888888888887654 211 1245667777666777777888
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 284 (415)
++|+++.+. .-....|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+.++-+.|..++.+.++.=
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 888888774 2133467788888888888888888888887652 3466788888888888888888888888877642
Q ss_pred CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH---
Q 014978 285 IK-PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--- 360 (415)
Q Consensus 285 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 360 (415)
++ -......-.+..-.+.|+.+.+..+|+..+. ..+--...|+..+..-.++|+.+.++.+|+++...+..+-
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 11 1233445555566678888888888888776 3444567888888888888888888888888888777643
Q ss_pred HHHHHHHHHHHhcCCC
Q 014978 361 EIYNSLLRTYAKAGKM 376 (415)
Q Consensus 361 ~~~~~l~~~~~~~g~~ 376 (415)
..|...+..-.+.|+-
T Consensus 1672 fffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHHHHhcCch
Confidence 5577777777776765
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=3.7e-07 Score=75.68 Aligned_cols=191 Identities=14% Similarity=0.025 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh--h
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA--E 221 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 221 (415)
.....+..+...+.+.|++++|...|+++.... +.+. ..+..+..++...|++++|...++++.+..+..... +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455677778888889999999999999887753 2222 456777888889999999999999998765432221 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHH
Q 014978 222 YTCVISSLVKL--------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 293 (415)
Q Consensus 222 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 293 (415)
+..+..++... |+.++|.+.++.+.+..+. +...+..+..... .... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 44455555543 6677888888887765322 2222222211100 0000 00 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
.+...+.+.|++++|+..++.+++.....+.....+..+..++...|++++|..+++.+....+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556678889999999999998873222223456788888889999999999998888876543
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=2.3e-07 Score=83.70 Aligned_cols=237 Identities=14% Similarity=0.119 Sum_probs=184.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
||--..-..+...+...|-..+|..+|++.. .|.-.+.+|...|+.++|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788888999999999998764 3566788999999999999999888874 7899999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888877788888888765332 22222333345799999999999877765 44677888888999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 271 EMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
+.|.+.|...... .| +...||.+-.+|.+.++-.+|...++++.+ .. .-+...|...+....+.|.++.|++.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999998875 45 557999999999999999999999999998 44 445566777777788999999999999
Q ss_pred HHHHHcCCC--CHHHHHHHHHHHH
Q 014978 350 VTLRNAGHV--STEIYNSLLRTYA 371 (415)
Q Consensus 350 ~~~~~~~~~--~~~~~~~l~~~~~ 371 (415)
.++.+.... ++.+...++....
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHHH
Confidence 998774433 4444444444443
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=4.8e-07 Score=71.98 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=109.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+..|.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3457788888876544432221 11 0 1112556677777777777777888888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLY-IKMEL--PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (415)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998888875 45677777777764 66676 488999998888874 4467778888888888899999999999
Q ss_pred HHHHcc
Q 014978 209 KMMSLF 214 (415)
Q Consensus 209 ~~~~~~ 214 (415)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 888764
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.88 E-value=1.6e-07 Score=74.47 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=138.1
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
|..+ ..+-..+...|+-+.+..+..+..... +.|....+.++....+.|++..|...+.+.....|+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 5555 677788888899988888888765432 34556667788999999999999999999998899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
|.+.|+++.|..-|.+..+.- +-+...++.|.-.+.-.|+.+.|..++......+ ..|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999999873 4466778889989999999999999999998774 34677777888888999999999
Q ss_pred HHHHHHHHH
Q 014978 204 LRIWKKMMS 212 (415)
Q Consensus 204 ~~~~~~~~~ 212 (415)
..+...-..
T Consensus 222 ~~i~~~e~~ 230 (257)
T COG5010 222 EDIAVQELL 230 (257)
T ss_pred Hhhcccccc
Confidence 998776543
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=7.3e-06 Score=65.34 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=124.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
.-.|++..++..-...... +.+...-.-+.++|...|.+..... ++.... .|.......+......-++.++-.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3345555554444433322 1233333344555555555433222 121111 233333333333333333333332
Q ss_pred -HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 205 -RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 205 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++.|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 233333333333232233333445667777777777665411 2223333345556667777777777777663
Q ss_pred CCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 284 GIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 284 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
-+..|.+.|..++.+ .+.+.+|..+|+++.+ +.+|+..+.+....++...|++++|..+++........+
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 245566655555543 3456777777777755 467777777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhcCCC
Q 014978 360 TEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 360 ~~~~~~l~~~~~~~g~~ 376 (415)
+.+...++.+-...|+.
T Consensus 241 petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666666666665
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.2e-05 Score=73.93 Aligned_cols=261 Identities=15% Similarity=0.159 Sum_probs=166.1
Q ss_pred CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 42 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG--FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
..|+..-+..+.++...+-+.+-+++++++.-.. +.-+...-|.|+-...+ -+..++.++.+++..-..|+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~------ 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD------ 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh------
Confidence 3577777888888888899999999998887432 11122223334333333 45566777777765444443
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++.. .+..|+.+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 3455566777888888887653 24444444444 3356677766665542 44578888888888888
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
..+|++-|-+. .|+..|..+++.+.+.|.+++-.+.+.-..+...+|. .-+.|+-+|++.+++.+..+++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-
Confidence 88887766543 2455688888888888888888888777666544443 34567788888888776655431
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 280 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
-||......+..-|...|.++.|.-+|... ..|..|...+...|+++.|...-
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666677777777777666555543 22455555555555555555443
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=2.1e-06 Score=68.37 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
-..+...|+-+....+........+.|....+.++....+.|++..|...+++..... ++|..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3344444555555554444443334444444445555555555555555555554442 444555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
.|..-|.+..+.. +.+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|+++.
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555554431 223334444444444455555555555554443222 3333444444444555555555443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=3.7e-07 Score=85.90 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.++-.|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++.....|.+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 57888888888888899999999998888864 23455667777888888899999998888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
+.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.- .+....|+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 889999999999999888743 4457788888888888899999988888887652 333344443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=9.3e-08 Score=76.06 Aligned_cols=161 Identities=7% Similarity=-0.002 Sum_probs=125.1
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
...|...|+++......+.... |. ..+...++.+++...++...+.+ +.+...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456788888887555433322 11 12223677788888888888765 5678899999999999999999
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAAC-ASQND--KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|...|++..+..|.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|...++++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999888888999999999874 67777 599999999999885 457778899999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHH
Q 014978 176 EKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~ 193 (415)
.+.. +|+..-+. +|..
T Consensus 171 L~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 171 LDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HhhC-CCCccHHH-HHHH
Confidence 8874 55555443 3343
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=6.9e-05 Score=65.93 Aligned_cols=365 Identities=14% Similarity=0.117 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+...+..++...++++.+.++++...-| ++..|..-|..-...++++....+|.+.+..- .+...|...+..--+
T Consensus 21 ~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~ 98 (656)
T KOG1914|consen 21 DSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRE 98 (656)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHH
Confidence 356677777888899999999999988766 67889999999999999999999999988753 456677766653332
Q ss_pred -cCCcCcHH----HHHHHHhhc---CCCCHhHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCCCHHHHH--
Q 014978 93 -NGQLDKVP----QMLQELKKN---TSPDVVTYNLWLAAC---------ASQNDKETAEKAFLELKKTKIDPDWISYS-- 153 (415)
Q Consensus 93 -~~~~~~a~----~~~~~~~~~---~~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-- 153 (415)
.++...+. +.|+-.... ...+...|+..+..+ ....+++...++|++++...+..=...|+
T Consensus 99 ~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY 178 (656)
T KOG1914|consen 99 TKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY 178 (656)
T ss_pred HccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 34444432 233333332 233444566655543 33345667778888877542211111111
Q ss_pred ----HHHHHH-------HhcCCHHHHHHHHHHHHh--cCCCCC---------------HHHHHHHHHH------------
Q 014978 154 ----TLTSLY-------IKMELPEKAATTLKEMEK--RTCRKN---------------RVAYSSLLSL------------ 193 (415)
Q Consensus 154 ----~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~---------------~~~~~~l~~~------------ 193 (415)
.=++.. -+...+-.|.++++++.. .|+... ...|..+|..
T Consensus 179 ~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 179 EAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 111110 011223344444444332 111000 0012222211
Q ss_pred -------------------------------------HHcCCC-------hHHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 194 -------------------------------------YTNMGY-------KDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 194 -------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
+...|+ .+++..+++.....-..-+..+|..+...-
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~e 338 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYE 338 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 111111 233444444433322222222333322211
Q ss_pred HhcC---ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCH
Q 014978 230 VKLG---EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 230 ~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 305 (415)
...- ..+.....++++...-..--.-+|..+++.-.+..-++.|..+|.++.+.+..+ +...+++++.-++ .++.
T Consensus 339 E~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~ 417 (656)
T KOG1914|consen 339 ESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDK 417 (656)
T ss_pred HHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCCh
Confidence 1111 244555555555543222234577788888888889999999999999987777 6667778887665 4889
Q ss_pred HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCCc--HHH
Q 014978 306 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGKMP--LII 380 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~a--~~~ 380 (415)
..|.++|+.-+. ...-+..-....+.-+...++-..++.+|+++...+.. ...+|..++.--..-|+.+ .++
T Consensus 418 ~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 418 ETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999998776 34445555567788888999999999999999998444 3488999999999999984 444
Q ss_pred HHHH
Q 014978 381 VERM 384 (415)
Q Consensus 381 ~~~m 384 (415)
-+++
T Consensus 495 ekR~ 498 (656)
T KOG1914|consen 495 EKRR 498 (656)
T ss_pred HHHH
Confidence 4443
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.82 E-value=3.3e-06 Score=80.59 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH--------
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV-------- 114 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 114 (415)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+....+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 5678889999999999999999999977765 354 44454455566677776665554 3322222222
Q ss_pred -----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 115 -----------VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 115 -----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
.++..++.+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.+++.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 344445555555555555555555555544 33444555555555555 5555555554443
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.4e-07 Score=70.99 Aligned_cols=93 Identities=9% Similarity=-0.142 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+...|++++|...|+......|.+...|..+..++.+.|++++|...|++....+ +.+...+..+..++.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344445555555555555555554455555555555555555555555555555555543 3344455555555555555
Q ss_pred HHHHHHHHHHHHhc
Q 014978 165 PEKAATTLKEMEKR 178 (415)
Q Consensus 165 ~~~a~~~~~~~~~~ 178 (415)
+++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=7.3e-09 Score=55.64 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 144 KIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 144 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.79 E-value=0.00014 Score=67.80 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 014978 329 ITAAYNKLEEQGDID---GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKITS 403 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~l~~~~ 403 (415)
.+.|+..+.+.++.. +|+-+++......+.+..+--.+|+.|+--|-+ |.++++.|.-..++-|..-+-+++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 466778888887755 566666676777777778888899999988876 578888888888888877776776666
Q ss_pred cCC
Q 014978 404 EMP 406 (415)
Q Consensus 404 ~~~ 406 (415)
..+
T Consensus 519 t~g 521 (932)
T KOG2053|consen 519 TSG 521 (932)
T ss_pred hcc
Confidence 655
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.6e-05 Score=71.97 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=58.2
Q ss_pred HhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-------C-CCCcccHHHHHHHHHhcC
Q 014978 24 QALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC-G-------F-LKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~ 94 (415)
.-|+.|.|.+-.+.+. +..+|..+.+.|.+..+.+-|.-.+-.|... | . .|+ ..-....-.....|
T Consensus 740 tiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 3445555544443332 3345566666666655555555444444321 0 0 011 11111222233445
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
.+++|..+|.+-++ |..|=..|-..|.|++|.++-+.=-+.. =..||......+-..++.+.|++.|++
T Consensus 815 MlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 55555555555442 2333334445555555555543221111 112344444444445555555555543
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=7e-06 Score=64.96 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=134.7
Q ss_pred cCcHHHHHHHHHHHHhc---C-CCCCcc-cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 58 NKKSAEAEALMEKMSEC---G-FLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...+|.+...-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45777888888777642 3 334433 355566677788899999999999888876666666555666667888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
|.++++.+.+.+ +.|..++-.-+-..-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988875 556667776666666777777888888887776 567888888888889888999998888888877
Q ss_pred cccccChhhHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 014978 213 LFAKMNDAEYTCVISSLVK---LGEFEKAENIYDEWESIS 249 (415)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 249 (415)
..+ .+...+..+...+.- ..+...+.+.|.+..+..
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 133344444444332 345666777777776654
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=2.2e-06 Score=80.79 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=129.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
....+++.-...... ..+.++..+..|..+..+.|.+++|..+++...+..|.+......++.++.+.+++++|...++
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 66 HKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333444433333333 3456688899999999999999999999999999899999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 139 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
+..+.. +.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 145 ~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 145 LYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999885 5566788889999999999999999999999843 445788999999999999999999999999876
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.9e-07 Score=68.56 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554442 3344444555555555555555555555555432 334444445555555555
Q ss_pred ChHHHHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMS 212 (415)
Q Consensus 199 ~~~~a~~~~~~~~~ 212 (415)
++++|+..|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00012 Score=69.35 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=170.3
Q ss_pred cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014978 80 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
+..|..+..+-.+.|.+.+|++-|-+. .|...|..++....+.|.|++-.+++...++..-.|... +.|+-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 356777777777777777777766443 366677777888888888888777777766665445443 4577777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHH
Q 014978 160 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 239 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 239 (415)
++.++..+..+++ ..|+......+..-|...+.++.|.-+|... ..|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 7777776655544 2466666777777777777777776655432 33666777777777777776
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 014978 240 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
..-++ ..+..+|-..-.+|...+.+..| +|...++.....-..-++.-|-..|-+++.+.+++..+..
T Consensus 1241 D~aRK------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL- 1308 (1666)
T KOG0985|consen 1241 DAARK------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL- 1308 (1666)
T ss_pred HHhhh------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-
Confidence 55443 23566777776777666555433 3334444445556677888888888888888888776441
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC-------CHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHV-------STEIYNSLLRTYAKAGKMPLIIVERMQK 386 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 386 (415)
-+.....|+.|.-.|++- ++++..+.++..-.. +++ ....|+-|+..|.+-..++-+.+..|..
T Consensus 1309 --ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h 1380 (1666)
T KOG0985|consen 1309 --ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEH 1380 (1666)
T ss_pred --hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhC
Confidence 122334566666666553 355554444433221 111 2356888888888877776555555554
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=1.6e-05 Score=74.78 Aligned_cols=351 Identities=12% Similarity=0.022 Sum_probs=195.2
Q ss_pred hhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 25 ALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
..+...|...|=+..+..++ ..+|..|...|....+...|.+.|++..+.+ ..+...+......|++..+++.|..+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33466677777666665443 4678888888888778888888888888765 346677777888888888888888874
Q ss_pred HHHhhcCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 104 QELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 104 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
-...+..+.- ...|....-.|...++...+..-|+...+.. +.|...|..++.+|.+.|++..|.++|.++... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 4433322222 2234445556677788888888888877764 456668888888888888888888888887764 3
Q ss_pred CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHccc------ccChhhHHHHHHHHHhcCChHHHHHHHHH-------HHh
Q 014978 182 KNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFA------KMNDAEYTCVISSLVKLGEFEKAENIYDE-------WES 247 (415)
Q Consensus 182 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~ 247 (415)
|+.. .-.......+..|.+.+++..+........ ..-..++..+...+...|-...+..++++ ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4322 111222334567788888777776654311 11111222222222222322222222222 221
Q ss_pred ccCCCCCchHHHHHHH-------------------H----HhcCcH---H---HHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 014978 248 ISGTGDPRVPNILLAA-------------------Y----INRNQL---E---MAESFYNRLVTKGIKPCYTTWELLTWG 298 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~-------------------~----~~~g~~---~---~a~~~~~~~~~~~~~p~~~~~~~l~~~ 298 (415)
+....+...|-.+-++ + -..+.. + .+.+.+-.-.+ ...+..+|..++..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 1111111112111111 1 111111 1 01111111111 11223445555544
Q ss_pred HHh--------cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 299 YLK--------KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 299 ~~~--------~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
|.+ ..+...|+..+...++. -..+..+|+.|... ...|++.-|...|-+-+...+....+|..+...+
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence 443 12234677777777762 33455666666554 5556777777777777777777777777777777
Q ss_pred HhcCCC--cHHHHHHHH
Q 014978 371 AKAGKM--PLIIVERMQ 385 (415)
Q Consensus 371 ~~~g~~--a~~~~~~m~ 385 (415)
.+..++ |...|...+
T Consensus 861 l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred EecccHHHhhHHHHhhh
Confidence 766666 344444433
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=8.6e-07 Score=76.61 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=66.0
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
..+...|+++.|+..++.+...- +.|+..+......+.+.++.++|.+.++++....|......-.+..++.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34445566666666666655431 22333333344555666666666666666555544445555555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|..+++...... +.|+..|..|..+|...|+..++.....+.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666555442 445556666666666666655555554443
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=2.5e-08 Score=53.55 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=18.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 284 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.4e-05 Score=69.38 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYT 195 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 195 (415)
.....-.+...|++++|+..++.++.. .+-|+.........+.+.++.++|.+.++.+... .|+ ....-.+..++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333344445666777777777776655 2344445555666677777777777777777665 343 445556667777
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
+.|++.+|+.+++......+. |...|..|.++|...|+..++..-..+. |...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHH
Confidence 777777777777766655333 5666777777777777776666655543 223456666666
Q ss_pred HHHHHHhC
Q 014978 276 FYNRLVTK 283 (415)
Q Consensus 276 ~~~~~~~~ 283 (415)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66555543
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=2.1e-06 Score=64.21 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=51.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+......+...+...|++++|.+.++.+...+ +.+...+..+..++.+.|++++|...++...+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3344444455555555555555555555555443 3344455555555555555555555555554442 3334444445
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
...+...|++++|...|+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=4.5e-05 Score=61.01 Aligned_cols=237 Identities=19% Similarity=0.115 Sum_probs=123.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
+-+.-.|++..++..-+...... -++..-..+.++|...|++..... .++....|.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchhHH
Confidence 44444577777766555544321 233333344566666665544332 2222223344444444444444444333
Q ss_pred HH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AE-KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
-. .+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333444443333333334444555677777777777666521 22222222344455666777777777776
Q ss_pred HcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 014978 212 SLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287 (415)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 287 (415)
+.. +..|.+.|..++.+ .+.+.+|.-+|+++.+. .+|+..+.+..+.++...|++++|..+++..+.+...
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 532 44455545444432 34566677777776653 3556666666666666677777777777766665422
Q ss_pred CHhHHHHHHHHHHhcCCH
Q 014978 288 CYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~ 305 (415)
++.+...++.+-...|..
T Consensus 240 dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKD 257 (299)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 455555555444444444
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=6.2e-07 Score=67.17 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
...+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+..+.+...+..+..++...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444444455555555554444432 223344444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhC
Q 014978 128 NDKETAEKAFLELKKT 143 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~ 143 (415)
|+++.|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4444444444444443
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=4.3e-05 Score=71.95 Aligned_cols=348 Identities=11% Similarity=-0.000 Sum_probs=210.8
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCCc
Q 014978 19 RVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGF-LKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 96 (415)
|.-|...-+...|.+-|+.+-+..+ +..++......|+...+++.|..+.-..-+... ..-...|....-.|.+.++.
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 4444555588889999999888755 678899999999999999999998433322210 00112344455567788999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
..|+.-|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|+.. .---..-.-+..|.+.+|+..+...
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999998876 44432 2122333456678999999888877
Q ss_pred Hhc------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH-------HHHcccccChhhHHHHHHHH-------------
Q 014978 176 EKR------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK-------MMSLFAKMNDAEYTCVISSL------------- 229 (415)
Q Consensus 176 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~------------- 229 (415)
... +...-..++..+...+...|-..++..++++ ........+...|-.+-.+|
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 542 1111122222222222222322333333322 22221111222222222221
Q ss_pred ----------HhcCCh---H---HHHHHHHHHHhccCCCCCchHHHHHHHHHh----c----CcHHHHHHHHHHHHhCCC
Q 014978 230 ----------VKLGEF---E---KAENIYDEWESISGTGDPRVPNILLAAYIN----R----NQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 230 ----------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~~~~~~~~~~~ 285 (415)
...+.. + -+.+.+-.-. ....+..+|..+...|.+ . .+...|...+...++..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~- 813 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC- 813 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-
Confidence 111111 1 0001110000 112234445444444433 1 22346777777776542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHH
Q 014978 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 365 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (415)
..+..+|+.|.-. ...|++.-+...|-+... ..+....+|..+...+....+++.|...|.......|.+...|..
T Consensus 814 ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 814 ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 2356677766555 666888888888877665 345567788888888899999999999999998888877666654
Q ss_pred HHHHHHhcCC
Q 014978 366 LLRTYAKAGK 375 (415)
Q Consensus 366 l~~~~~~~g~ 375 (415)
....-...|+
T Consensus 890 ~Ali~eavG~ 899 (1238)
T KOG1127|consen 890 EALIPEAVGR 899 (1238)
T ss_pred HHHhHHHHHH
Confidence 4444444443
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=4.5e-05 Score=69.61 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
..+.|.+|+.+++.+.+.. ...--|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3444444444444444331 122234444555555555555555543321 12333445555555555555
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 285 (415)
+-++.. |+......|..-..-+-..|++.+|.+++-.+. .|+ ..|.+|-+.|..+...++..+-....
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh-
Confidence 444431 222233334444444444555555555443221 222 13445555555555555444332111
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
-..|...+..-+-..|++..|..-|-++
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1224444555555566666666655544
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.00041 Score=61.31 Aligned_cols=357 Identities=13% Similarity=0.085 Sum_probs=202.3
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
-|..+|+.||+-+... .++++.+.++++... ++-.+..|..-+..-...++++.+..+|.+.... .-+...|...++
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHH
Confidence 3899999999988766 999999999999875 4557788999999999999999999999997654 345777777776
Q ss_pred HHHhcC-CHH----HHHHHHHHHH-hCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 123 ACASQN-DKE----TAEKAFLELK-KTKIDPDW-ISYSTLTSL---------YIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 123 ~~~~~~-~~~----~a~~~~~~~~-~~g~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
.-.+.+ +.. ...+.|+-.. +.|+.+-. ..|+..+.. |....+.+...++++++...-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 554432 222 2333444333 34443322 244444433 2333455666777777764311100111
Q ss_pred HH------HHHHHH-------HcCCChHHHHHHHHHHHHc--ccccChh---------------hHHHHHH---------
Q 014978 187 YS------SLLSLY-------TNMGYKDEVLRIWKKMMSL--FAKMNDA---------------EYTCVIS--------- 227 (415)
Q Consensus 187 ~~------~l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~~--------- 227 (415)
|+ .=|+.. -+..++..|.+++++.... |..-... .|..+|.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 111100 1222344455555444321 1100000 0111111
Q ss_pred ----------------------------------------HHHhcCC-------hHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 228 ----------------------------------------SLVKLGE-------FEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 228 ----------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
.+...|+ -+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 12222233322221111122222222
Q ss_pred HHHHHhc---CcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCC-CHHHHHHHHHH
Q 014978 261 LAAYINR---NQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 335 (415)
Q Consensus 261 ~~~~~~~---g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 335 (415)
...--.. +..+.....++++...- +.| .-+|..++..-.+...+..|..+|.++.+ .+..+ .+...++++.-
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARE--DKRTRHHVFVAAALMEY 411 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhh--ccCCcchhhHHHHHHHH
Confidence 2111111 12444555566555422 233 34677788888888889999999999988 44455 66777777776
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHH--H-HHHHHhccCC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET--Q-KVLKITSEMP 406 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t--~-~~l~~~~~~~ 406 (415)
++ .++.+.|.++|+.-.+.-..++.--...+.-+.+-++- +..+|++....++.|+..- | ++|.-=++.+
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 65 57899999999988887666666666677777777665 6889999988877766543 4 4555444444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=8.8e-05 Score=58.94 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=141.3
Q ss_pred cCCHHHHHHHHHHHHh---cC-CCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 162 MELPEKAATTLKEMEK---RT-CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
..+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+....+. +..+-..-.--+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 4677888888888764 23 4455443 556667777889999999999998887522 3333222233356688999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
+|.++++.+.+.+ +.|..++-.=+...-..|+.-+|.+-+....+. +..|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998876 557777776666777788888888888888775 34588999999999999999999999999987
Q ss_pred hcccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCHHH
Q 014978 317 GSVRKWVPDHRLITAAYNKLEEQG---DIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 317 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
- .-+.++.-+..+...+.-.| +.+.|.+.|.+..+..+.+...
T Consensus 182 l---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 L---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred H---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 6 23345555566666554443 5678888999998877755433
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=0.00024 Score=65.10 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=110.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.|.-+.+.|+++.|+..|-++.. .-.-+.+-.....+.+|+.+++.+.... .-..-|..+..-|+..|+++
T Consensus 712 wg~hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHH
Confidence 34455667777777777654432 1233455556677777777777776543 22334566667777777777
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|.++|.+.. .++-.|..|.+.|+|+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 7777775542 34556677777777777777665543 223444455555555566666666666654332
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
.|+ ..|..|-+.|..+..+++.++-... .-..|...+..-+...|+...|...|-+
T Consensus 852 ---~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 852 ---EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ---Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 233 2345566666666666555443211 1122334444445555555555554433
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.5e-05 Score=71.08 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=94.9
Q ss_pred CcchHHHHHH--HHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---------CCC
Q 014978 44 GPDTCSALLH--SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---------TSP 112 (415)
Q Consensus 44 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 112 (415)
|..+-..+++ .|...|+.+.|.+-++.+.. ...|..+...|.+..+++-|.-.+..|... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 36677888888877766554 346888888888888888887777665421 111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+..+=..........|.+++|+.+|++-.+. ..|=..|...|.+++|+++-+.--+.. =..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 1123333344455678888888888776653 344556667788888887765432221 2345666666
Q ss_pred HHHcCCChHHHHHHHHHH
Q 014978 193 LYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~ 210 (415)
-+-..++.+.|++.|++.
T Consensus 867 ~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 666777888888888775
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=9.6e-06 Score=70.91 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=63.3
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..... +.+..........+.+.++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~-pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD-PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 334444555566666666655432 22 23335555555555556666665555442 334445555555555666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.|+++.+++.... |-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666665541 223445666666666666666666555544
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1.4e-05 Score=60.37 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 014978 122 AACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333334444444444444443
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0022 Score=60.26 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 293 ELLTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 293 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
+.|+..+.+.++.. +|+-+++.... .-+.|..+-..++..|+-.|-+..|...|+.+--..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 46677788887765 45556666554 3344566667788999999999999999887654433
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=1.2e-05 Score=60.83 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCCcCcHHHHHHHHhhcCC-CC--HhHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELKKNTS-PD--VVTYNLWLA 122 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~l~~ 122 (415)
..++..+ ..++...+.+.++.+.+.. +.++. ..-.+...+...|++++|...|+.+....+ ++ ......+..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333333 3666666666666666643 12211 122233556667777777777777665531 11 123444566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++...|++++|+..++..... ......+....++|.+.|+.++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777777777777654332 234445566677777777777777776653
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=3.6e-05 Score=55.99 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIK-P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
++..++..+.+.|++++|.+.|..+...... | ....+..+...+.+.|+++.|...|+.+.....+.+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666666677777766666653211 0 1234455666666777777777777766652111111234556666
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
.++...|++++|...++++.+..|.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 666677777777777777776666554443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=1.2e-05 Score=70.25 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=108.7
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+..|.+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344567777778899999999999999865 44 45567788888888899999999988878888888998999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+.++++.|+.+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999999873 344459999999999999999999999988643
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.5e-06 Score=47.44 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 80 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (415)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999874
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=1.3e-05 Score=58.37 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHH
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHML 87 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 87 (415)
+..+..+.+.|++++|.+.|+.+....|+ ..++..+..++.+.|++++|...|+.+.... |+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHH
Confidence 33444444445555555555444443332 1233344444444455555555554444321 11 22233334
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.++.+.|+.++|...++++.+..|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444444444444443333
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.25 E-value=0.00013 Score=60.21 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-h---HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPD-T---CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
.+..+....+.|++++|++.|+.+....|+.. + .-.++.++.+.+++++|...+++..+.........|...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 45566666667777777777777666655332 1 1344566667777777777777766543111112232333332
Q ss_pred Hh--cC---------------C---cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 014978 91 IS--NG---------------Q---LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150 (415)
Q Consensus 91 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 150 (415)
+. .+ + ..+|+..|+.+.+..|.+ .-..+|...+..+... =..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S--------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS--------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC--------------hhHHHHHHHHHHHHHH----HHH
Confidence 21 00 0 112333444444333322 2223333333322211 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124667788889998888888888875 112234456677888888899988888776554
No 147
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.23 E-value=0.0027 Score=55.15 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-c------hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-D------TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 85 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (415)
.....+|..+.+.+++.+|.++|.++.+...+. . .-+.++++|. .++.+.....+....+.- | ...|-.
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~ 82 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLP 82 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHH
Confidence 345678889999999999999999987763322 2 2245566665 355666666666665542 3 334545
Q ss_pred HHHHH--HhcCCcCcHHHHHHHHhhcC----CC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----
Q 014978 86 MLNLY--ISNGQLDKVPQMLQELKKNT----SP-----------DVVTYNLWLAACASQNDKETAEKAFLELKKTK---- 144 (415)
Q Consensus 86 l~~~~--~~~~~~~~a~~~~~~~~~~~----~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---- 144 (415)
+..++ -+.+.+.+|.+.+....... +| |...=+..+.++...|.+.++..+++++...=
T Consensus 83 LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE 162 (549)
T PF07079_consen 83 LFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRE 162 (549)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh
Confidence 54443 35677778877776654431 11 11123456677778888888888777776442
Q ss_pred CCCCHHHHHHHHHHHHh
Q 014978 145 IDPDWISYSTLTSLYIK 161 (415)
Q Consensus 145 ~~~~~~~~~~l~~~~~~ 161 (415)
..-+..+|+.++-.+++
T Consensus 163 ~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 163 CEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hcccHHHHHHHHHHHhH
Confidence 23566667664444433
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2.6e-06 Score=46.10 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=30.8
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 78 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (415)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999877
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.5e-06 Score=46.49 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444555555555555555555544444443
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.7e-06 Score=45.48 Aligned_cols=32 Identities=41% Similarity=0.661 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDP 147 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (415)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.17 E-value=5e-05 Score=66.83 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh
Q 014978 144 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221 (415)
Q Consensus 144 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (415)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777787777777654 1111223445778888888888888888887777788888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
++.|+..+.+.|++..|.++...|.......+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777666555666665555555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=4.3e-05 Score=52.83 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 014978 121 LAACASQNDKETAEKAFLE 139 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~ 139 (415)
..++...+++++|.+.++.
T Consensus 41 ~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 41 AAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=2.9e-05 Score=53.70 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++......+.+..++..+..++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4445555566666666666666665543 222344555556666666666666666666555455555666666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 014978 128 NDKETAEKAFLELKKT 143 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~ 143 (415)
|+++.|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666665543
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00086 Score=57.34 Aligned_cols=207 Identities=10% Similarity=-0.024 Sum_probs=127.7
Q ss_pred HHHHHHHH-HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch------
Q 014978 184 RVAYSSLL-SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV------ 256 (415)
Q Consensus 184 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------ 256 (415)
-.+|..+- .++...|+.++|...--...+.... +......-..++...++.+.+...|++....+ |+-..
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhh
Confidence 34444332 4556678888887776666554321 22222222233445677888888888776653 22211
Q ss_pred -------HHHHHHHHHhcCcHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 257 -------PNILLAAYINRNQLEMAESFYNRLVTK---GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 257 -------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
+..=..-..+.|++..|.+.|.+.+.. ++.|+...|........+.|+.++|+.-.+++.+ +.|..
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~sy 320 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSY 320 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHH
Confidence 111123456778999999999988753 3355666777777788889999999999988876 22221
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCc-HHHHHHHHhCCCCCCHHHHH
Q 014978 327 -RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMP-LIIVERMQKDNVQMDAETQK 397 (415)
Q Consensus 327 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~a-~~~~~~m~~~~~~p~~~t~~ 397 (415)
..+..-..++...+++++|.+-++...+.... ...++.....++-++.+.+ ..++.--+.....|....|+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYR 395 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHH
Confidence 22333334566778899999999988876554 4466777777777666654 55555444444445555553
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=2.9e-05 Score=68.14 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+..+...|++++|++.|+.+....| +...|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34556667777777777777777777655 45666777777777777777777777777654 33455666666777777
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
|++++|+..|++..+..|.+......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 77777777777776655555444433
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.10 E-value=0.00011 Score=64.85 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (415)
+.+......+++.+....+++.+..++.+.+.. ...-..|..++++.|...|..+.++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555566666666666666666666543 11122344566777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (415)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666555455555555555444443
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=3.4e-05 Score=62.88 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
+.+.+++.+|+..|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+......|....+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 444455555555555555442 2234444444455555555555555555544444444455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~ 153 (415)
+.|++.++. .|+..+|-
T Consensus 170 ~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHhhhcc--CCCcHHHH
Confidence 555555443 34444443
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.09 E-value=0.0017 Score=53.56 Aligned_cols=180 Identities=12% Similarity=0.040 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
.....+.+.|++++|.+.|+++.... +-+... .-.++.++.+.+++++|...+++..+..+.....-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445566777777777777777652 112222 13455677777788888888877777644333333333333322
Q ss_pred h--c---------------CCh---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh
Q 014978 231 K--L---------------GEF---EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290 (415)
Q Consensus 231 ~--~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 290 (415)
. . .|. ..|...|+.+.+. |-...-..+|...+..+... + -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-l--a~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-L--AKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-H--HHH
Confidence 1 1 111 2333444444433 22222233444433333221 0 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
-..+..-|.+.|.+..|+.-++.+++.-.+.+........++.+|...|..++|..+...+.
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11445568888899999999999888545555566777788888999999999888776654
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00016 Score=61.28 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=88.1
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 357777777777778888888888887543 2234444444444223 45556688888887777777888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888765 33332 36777777777778888777777777764
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.0014 Score=55.72 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=10.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
.+...+.+.|++++|.++|++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444444444443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00019 Score=63.14 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=45.8
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 133 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (415)
.+...|+++.|++.|++.++.+ +.+...|..+..++...|++++|+..++++.+..+.+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555555443 223344444445555555555555555555544444555555555555555555555
Q ss_pred HHHHHHHHhC
Q 014978 134 EKAFLELKKT 143 (415)
Q Consensus 134 ~~~~~~~~~~ 143 (415)
...|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.01 E-value=0.00014 Score=50.08 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKME--------LPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
.|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666555432 122344555555555555555555555
Q ss_pred HHHHH
Q 014978 191 LSLYT 195 (415)
Q Consensus 191 ~~~~~ 195 (415)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=5.7e-05 Score=56.14 Aligned_cols=99 Identities=8% Similarity=-0.108 Sum_probs=76.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+....-.+...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|+..|.......+.|..++-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445556666777888888888888887765 33556667777778888888888888888777777788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 014978 124 CASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00016 Score=53.77 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=59.3
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (415)
+...+...|++++|..+|+.+....+.+...|-.|..++-..|++++|+..|......+ +.|+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 34445556667777777766666566666666666666666677777777776666654 34555666666666666666
Q ss_pred HHHHHHHHHHHhc
Q 014978 166 EKAATTLKEMEKR 178 (415)
Q Consensus 166 ~~a~~~~~~~~~~ 178 (415)
+.|.+.|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.99 E-value=0.0012 Score=50.16 Aligned_cols=157 Identities=9% Similarity=-0.061 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhc
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 127 (415)
..+..+..+.=+++...+-..+-.. ..|++..--.|..++.+.|+..+|...|++...+ +..|....-.+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 3444555555566665544443333 2466666667778888888888888888887777 777778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
+++..|...++.+-+... .-++.+.-.+.+.+...|.+.+|...|+..... .|+...-......+.+.|+.+++..-
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 888888888888776531 112234455677788888888888888888775 45544433344556666766555444
Q ss_pred HHH
Q 014978 207 WKK 209 (415)
Q Consensus 207 ~~~ 209 (415)
+..
T Consensus 216 ~~~ 218 (251)
T COG4700 216 YVA 218 (251)
T ss_pred HHH
Confidence 333
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=2.3e-05 Score=49.90 Aligned_cols=59 Identities=20% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG 75 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 75 (415)
..+..+.+.|++++|++.|+.+....| ++.++..+..++...|++++|...|+++.+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467778888899999999988888877 56788888888888999999998888887753
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00035 Score=54.61 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 299 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 299 (415)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+.+..+... -+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44444455555555555555555544322211 13444455555555555555555555554321 1233344444444
Q ss_pred HhcCCHHH
Q 014978 300 LKKGQMEK 307 (415)
Q Consensus 300 ~~~~~~~~ 307 (415)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 44444333
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0049 Score=52.97 Aligned_cols=265 Identities=11% Similarity=-0.003 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLY 90 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (415)
.-....+..+.+..++..|+..+..+.+..|+ ..-|..-+..+...|++++|.--.+.-.+.. |. ...+...-+++
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 33455666778888999999999998888774 4455566667777788888876665554421 21 12222222333
Q ss_pred HhcCCcCcHHHHHH---------------HHhhc--CCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 014978 91 ISNGQLDKVPQMLQ---------------ELKKN--TSPDVVTYNLW-LAACASQNDKETAEKAFLELKKTKIDPDWISY 152 (415)
Q Consensus 91 ~~~~~~~~a~~~~~---------------~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 152 (415)
...++..+|.+.++ .+... .+|.-.+|..+ ..++.-.|++++|.+.--...+.. ..+....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHH
Confidence 33333333332222 22111 22333445444 356777889999888877777663 2233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHcCCChHHHHHHHHHHHHcc---cc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA-------------YSSLLSLYTNMGYKDEVLRIWKKMMSLF---AK 216 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~ 216 (415)
-.=..++.-.++.+.+...|++....+ |+... +..-..-..+.|.+..|.+.|.+.+... ..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 222334455788899999999888753 44322 2222333467788889999988887743 23
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
|+...|........+.|+.++|+.--+...+.+.. -...+..-..++...+++++|.+-++...+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445666666777888888888887776653210 1122233334455567888888888877654
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00041 Score=54.20 Aligned_cols=92 Identities=15% Similarity=-0.007 Sum_probs=65.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 121 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 121 (415)
....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+..+..+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 345677777788888888888888888876532221 246777777888888888888888887776666777777777
Q ss_pred HHHHhcCCHHHHHH
Q 014978 122 AACASQNDKETAEK 135 (415)
Q Consensus 122 ~~~~~~~~~~~a~~ 135 (415)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776544443
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00019 Score=49.55 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcccccChhhHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMG--------YKDEVLRIWKKMMSLFAKMNDAEYT 223 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (415)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|..|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666666888888889999988888 788888988887776542 2235667777777777888888888
Q ss_pred HHHHHHHh
Q 014978 224 CVISSLVK 231 (415)
Q Consensus 224 ~l~~~~~~ 231 (415)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.5e-05 Score=41.98 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.0
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.94 E-value=0.0097 Score=50.85 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=132.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH--HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNL--YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 135 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (415)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|......-.--...|.-..-+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555555554443321 22333333333322 2335666666666666653211011112222222334566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHH---HcCCChHHHHHHHHH
Q 014978 136 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVA--YSSLLSLY---TNMGYKDEVLRIWKK 209 (415)
Q Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~ 209 (415)
+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .-..++..|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 655554431 2223355556666666666666666665544321 2222211 11111111 111234455554444
Q ss_pred HHHcccccChh-hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCC
Q 014978 210 MMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKP 287 (415)
Q Consensus 210 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p 287 (415)
..+ ..|+.. .-..-..++.+.|+..++-.+++.+-+..+.| .++. +..+.+.|+. +..-+++... ..++|
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGDT--ALDRLKRAKKLESLKP 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCc
Confidence 443 333433 22233455667777777777777766653333 2222 2223344432 2222222211 01233
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHc
Q 014978 288 -CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 288 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 355 (415)
+..+...+..+-...|++..|..--+.+.. ..|....|..|...-.. .|+-.++...+.+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r----~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR----EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh----hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 344555566666667777766666555544 45666666666665433 37777777777776664
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=0.0003 Score=59.60 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
|..+++..-+.+..+.|..+|.+..+....+...|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 44444444444444455555555443322233333333333222 33333455555544443 23344444444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555444433 11111 2444444444444444444444444443
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=1.5e-05 Score=53.86 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=30.7
Q ss_pred CCcCcHHHHHHHHhhcCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 171 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (415)
|+++.|+.+++++.+..+. +...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443221 222333344444445555555444444 1111 11122222334444445555555444
Q ss_pred HH
Q 014978 172 LK 173 (415)
Q Consensus 172 ~~ 173 (415)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.0011 Score=60.92 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444333344455555555555555432 3444455555555555555555555555444
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.0011 Score=61.09 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
+...|..+.-.....|++++|...++++...+ |+...|..+...+...|++++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555444445566666666666655542 45555555566666666666666666655553
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=3.9e-05 Score=51.72 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443210 1222233344444444555555444444
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.0011 Score=51.54 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDP--DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
...|..++..+...|++++|...|++.......+ ...++..+..++...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666666677777777776665442111 12356666666666677777777666666542 22233344444
Q ss_pred HHHH
Q 014978 192 SLYT 195 (415)
Q Consensus 192 ~~~~ 195 (415)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=2e-05 Score=41.47 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00028 Score=54.90 Aligned_cols=81 Identities=14% Similarity=-0.087 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK--CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
...|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++.....+....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455566666666677777777777665442111 12345556666666666666666666665544444455555555
Q ss_pred HHH
Q 014978 123 ACA 125 (415)
Q Consensus 123 ~~~ 125 (415)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00049 Score=56.62 Aligned_cols=114 Identities=10% Similarity=-0.047 Sum_probs=89.8
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN---DKETAEKAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (415)
+-|...|-.|...|...|+++.|..-|.+..+..+++...+..+..++..+. .-.++..+|+++.... +.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 5578889999999999999999999999988888888888888887776554 3467888999998874 45666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
.|...+...|++.+|...++.|.+.. +|+ ..+..++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHH
Confidence 88888999999999999999998873 333 344455443
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.007 Score=51.55 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHHHcccccC-----hhh
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEK----RTCRKN--RVAYSSLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAE 221 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~ 221 (415)
....+|.+. ++++|.+.+++... .| .|+ ...+..+...|... |++++|++.|.+..+.-..-+ ...
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 333333333 66666666655543 22 122 23455666777777 899999999988876421111 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCC--HhH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNRLVTKG--IKPC--YTT 291 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~ 291 (415)
+..+...+.+.|++++|..+|+++.......+.. .+...+-++...|++..|.+.+++..... +..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 6677888899999999999999887653322211 12223345556788888888888887542 2111 224
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHh
Q 014978 292 WELLTWGYLK--KGQMEKVLECFKKA 315 (415)
Q Consensus 292 ~~~l~~~~~~--~~~~~~a~~~~~~~ 315 (415)
...|+.+|-. ...++.++.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4455555532 22344555555443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.83 E-value=0.0011 Score=47.57 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---CHhHHHHHHHHHHhc
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DVVTYNLWLAACASQ 127 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 127 (415)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334444555555555555555443222 122333334444455555555555544433222 222222233344444
Q ss_pred CCHHHHHHHHHH
Q 014978 128 NDKETAEKAFLE 139 (415)
Q Consensus 128 ~~~~~a~~~~~~ 139 (415)
|+.++|...+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 555555444443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=5.2e-05 Score=48.73 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22333333444444444444444444444443
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00034 Score=57.28 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=119.9
Q ss_pred hHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCc-------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 28 TRARENFFENLPDKMR---GPDTCSALLHSYVQNKK-------SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.+.|.+-++..-...+ +......++.++....+ ..+....-++++..| .-+.+.+++.
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eG------------N~~m~~~~Y~ 98 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAESLKNEG------------NKLMKNKDYQ 98 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHHHHHHH------------HHHHHhhhHH
Confidence 4455555555444322 23334445555544433 123555555555554 3456789999
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
+|+..|.+..+..|.|.+.|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|.+.|++..+
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999988763 22345899999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHH-HHcCCChH---HHHHHHHHHHHcccccC
Q 014978 178 RTCRKNRVAYSSLLSL-YTNMGYKD---EVLRIWKKMMSLFAKMN 218 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~-~~~~~~~~---~a~~~~~~~~~~~~~~~ 218 (415)
. .|+-.+|-.=+.. -.+.++.. .+..-++.....|..|+
T Consensus 178 l--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 178 L--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred c--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 5 6766666554443 33344443 33333443333344344
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.79 E-value=0.01 Score=48.08 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-C---cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-G---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (415)
....+..++...+.|++++|.+.|+.+..+.| + ..+--.++.++.+.+++++|+..+++....-.......|...|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 44578899999999999999999999988766 3 3455566778889999999999999988753222334566666
Q ss_pred HHHHh
Q 014978 88 NLYIS 92 (415)
Q Consensus 88 ~~~~~ 92 (415)
.+++.
T Consensus 114 kgLs~ 118 (254)
T COG4105 114 KGLSY 118 (254)
T ss_pred HHHHH
Confidence 66553
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00082 Score=52.63 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 111 SPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4566677777777654 46777778888888888888888888888887654
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.0031 Score=45.26 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++......+-.-+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666655432 2244455566666666666666666665520000001222222334555
Q ss_pred HcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 338 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
..|+.++|...+-...... ...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~---~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET---LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 6666666666655444321 124554444443
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.02 Score=49.09 Aligned_cols=292 Identities=13% Similarity=0.023 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcC-CCCcchHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCccc--HHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDK-MRGPDTCSALLHS--YVQNKKSAEAEALMEKMSECGFLKCPLP--YNHML 87 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 87 (415)
.+.+..|+..+-+|+-..|.++-.+.... ..|....-.|+.+ -.-.|+++.|.+-|+-|... |.... ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 45678888899999999999998776543 2354444444443 34579999999999999863 43322 23333
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWIS--YSTLTSLYIK--- 161 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~--~~~l~~~~~~--- 161 (415)
-...+.|..+.|..+-+.....-|.-...+...+...+..|+|+.|+++++.-+... +.++..- -..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 344568889999999888877767777889999999999999999999999877554 3444432 1223322111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAY-SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
..+...|...-.+..+ +.|+..-- ..-..++.+.|+..++-.+++.+.+..+.|+.. . +....+.|+ .+..
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~d 313 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALD 313 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHH
Confidence 2345566666555554 35664432 234578889999999999999998876666532 1 122344454 3333
Q ss_pred HHHHHHh-ccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhHh
Q 014978 241 IYDEWES-ISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 241 ~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 317 (415)
-++...+ ..++| +......+..+-...|++..|..--+..... .|....|..|...-. ..|+-.++...+.+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3443322 11233 5566677788888899999888777776653 677778877776554 45999999999998887
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0026 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSEC 74 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 74 (415)
..+..|....+.|++.+|++.|+.+....|+ +.+.-.++.++.+.|+++.|...++.+.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678888889999999999999988877653 345667788888899999999999988775
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0027 Score=52.45 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=93.7
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC
Q 014978 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 183 (415)
....|.|...|-.|..+|...|+++.|...|.+..+.. +++...+..+..++.... ...++..+|+++...+ +.|
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ 226 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PAN 226 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Ccc
Confidence 33479999999999999999999999999999999874 667777777777766543 3468899999999874 456
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
+.+...+...+...|++.+|...|+.|.+..+ ....+..++.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp--~~~~rr~~ie 268 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP--ADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CCCchHHHHH
Confidence 77777888999999999999999999999743 3333444443
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.006 Score=49.15 Aligned_cols=128 Identities=10% Similarity=0.092 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH-----HH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI-----SS 228 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~ 228 (415)
.++.++.-.|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3344444444444445555555544333344444455555555555555555555444332222222222221 12
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 229 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+..+.+.+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344444444444444433 22333333322233334445555555555544
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.0013 Score=49.83 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVLK 400 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l~ 400 (415)
....++..+...|+++.|..+++.+....|.+...|..++.+|...|+. |...|..+. +.|+.|+..|-.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999998 466666553 379999999987765
Q ss_pred H
Q 014978 401 I 401 (415)
Q Consensus 401 ~ 401 (415)
.
T Consensus 144 ~ 144 (146)
T PF03704_consen 144 E 144 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00027 Score=44.84 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
..+.+.|++++|...|+++++. .+-+...+..+..++...|++++|...|+++.+..|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444555555555555555441 122334444555555555555555555555554444
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.0002 Score=45.92 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..|++++|+++|+++.. ..+-+...+..+..+|.+.|++++|..+++++....+.
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34445555555555444 12224444444445555555555555555555444444
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.66 E-value=0.0019 Score=53.86 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
|...+..+.+.|++++|...|+.+++.. |+. ..+-.+...|...|++++|...|+.+++....-+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4443444455677777777777777642 332 3555666777777777777777777776322222234455555
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
...+...|+.+.|..+|+.+.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667777778888888777777666543
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.66 E-value=0.0011 Score=56.64 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----hccCC-CCCchHHHHHHHHHhcCcHHHHHHHHHHHH----hCCC-CCCHh
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWE----SISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLV----TKGI-KPCYT 290 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~~ 290 (415)
.|..|...|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666677777766655322 12211 123355566677777777777777666532 2221 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcc---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
+.-+|...|.-..++++|+.++.+-+... ....-....+.+|..++...|..+.|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566667777777777777766543311 11122345667777777777777777777665544
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00036 Score=44.91 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcC
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAG 356 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 356 (415)
...|..+...+...|++++|+..|+++++. .+.+...+..+..++...| ++++|++.+++..+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 345555566666666666666666666551 1223455555556666666 4666666666655543
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.022 Score=46.07 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV-----AYSSL 190 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l 190 (415)
..+.++.++.-.|.+.-....+.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|.. .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555566666666666666655444455555666666666666666666666554332222222 22222
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
...+.-.+++..|...+++....+.. +....|.-.-+..-.|+...|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455666666666666554322 3333333333444456666666666666654
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.012 Score=47.37 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 156 TSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
...+...|++++|.+.|+.+...... --....-.++.++.+.|+++.|...++..++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445556666666666665543110 012223344555556666666666666655543
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.017 Score=44.09 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=74.7
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHHH
Q 014978 216 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWEL 294 (415)
Q Consensus 216 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ 294 (415)
.|+...-..|..+....|+..+|...|++...--...|....-.+.++....+++..|...++++.+.+.. -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566666666666666666666655444445555566666666666666666666666654310 02223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 352 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (415)
+...+...|.+.+|..-|+.+.+ .-|+...-......+.++|+..++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55566666667667776666665 3455444333344455666555554433333
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.59 E-value=0.0014 Score=51.38 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 146 DPDWISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
..|-.+|..+++.|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 45777888888888754 6778888888999999999999999999998764
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00056 Score=44.00 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKM 210 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 210 (415)
|..+...+...|++++|+..|.+..+.. +.+...|..+..++...| ++++|++.+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333344444444444444444443331 222333333334444443 344444444433
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.0022 Score=54.94 Aligned_cols=265 Identities=16% Similarity=0.032 Sum_probs=162.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-C----cchHHHHHHHHHhcCcHHHHHHHHHHH--Hh--cCCC-CCcccHHHH
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-G----PDTCSALLHSYVQNKKSAEAEALMEKM--SE--CGFL-KCPLPYNHM 86 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l 86 (415)
..|-.+.+.|+.+..+.+|+.+.+.+. | ..+|+.|..+|.-.+++++|++.-..= +. .|-+ -...+-..|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345567999999999999999988753 2 346788888888899999998864321 11 1101 022233445
Q ss_pred HHHHHhcCCcCcHHHHHHHHh----hc--CCCCHhHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELK----KN--TSPDVVTYNLWLAACASQND--------------------KETAEKAFLEL 140 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 140 (415)
...+--.|.+++|+-...+-. +. -.....++..+...|...|+ ++.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 555666778888766544311 11 11233455556666655442 23344444332
Q ss_pred H----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 141 K----KTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEME----KRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 141 ~----~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
. +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 2 1110 0112345666677777789999887654422 22211 23456778888899999999999998875
Q ss_pred HHcccc-----cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 211 MSLFAK-----MNDAEYTCVISSLVKLGEFEKAENIYDEWESI-----SGTGDPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 211 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
...-+. ....+..+|...|.-..++++|+..+.+-... +.......+.+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 443221 12335667788888888888888887753221 11224567778888998889888888776654
Q ss_pred H
Q 014978 281 V 281 (415)
Q Consensus 281 ~ 281 (415)
+
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 4
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0025 Score=53.05 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHH
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKNRVAYS 188 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 188 (415)
..|........+.|++++|...|+.+.+. -|+. ..+..+..+|...|++++|...|+.+.+.-. +.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556678888888888888876 3332 4666778888888888888888888876411 11234455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
.+...+...|+.++|..+|+.+.+..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566677778888888888888877543
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.45 E-value=0.068 Score=46.88 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=94.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.+|...+..-.+..-++.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+.-+. .++.+..-....+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHHHH
Confidence 346667777778888999999999999888 4667788888887765 5888999999988765 3333333345566
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
.-+...++-+.|..+|+.....-.. -..+|..+|.--..-|+. +.++-++|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778889999999999966553222 246899999988888887 3444455543
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.45 E-value=0.0017 Score=47.48 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (415)
....+..+....+.|++++|++.|+.+..+.| ...+--.|+.+|.+.++++.|...++..++.........|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44578899999999999999999999999865 34566788999999999999999999999875333345566666
Q ss_pred HHHHhcC
Q 014978 88 NLYISNG 94 (415)
Q Consensus 88 ~~~~~~~ 94 (415)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 6665543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.014 Score=44.07 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (415)
..++..+...|++++|..+.+.+....|-+...|..+|.++...|+...|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555555554
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.33 E-value=0.094 Score=45.75 Aligned_cols=35 Identities=11% Similarity=-0.060 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.+...+..++.++.-.|+++.|.+..+++.+..++
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45555666777777777777777777777766544
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.089 Score=45.36 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..+++++..++... + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4555566677778877777776554 2 45777788888888888888877765432 1 13467788888888
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-------~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-------P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-------C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887777652 1 1 3345557777777777665443
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.28 E-value=0.11 Score=45.68 Aligned_cols=349 Identities=13% Similarity=0.110 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCC-----C--Ccc---------hHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKM-----R--GPD---------TCSALLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
...+..++-+.+.+.+++|++.|....... | +.. .=+..+.++...|++.++..+++++..+=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 345556777788999999999987765541 1 111 114567788899999999999999876533
Q ss_pred C----CCcccHHHHHHHHHhc--------CCcCcHHHHHHH-------Hhhc-------CCCCHhHHHHHHHHHHh----
Q 014978 77 L----KCPLPYNHMLNLYISN--------GQLDKVPQMLQE-------LKKN-------TSPDVVTYNLWLAACAS---- 126 (415)
Q Consensus 77 ~----~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~-------~~~~-------~~~~~~~~~~l~~~~~~---- 126 (415)
+ -+..+|+.++-.++++ ...+-+.+.|+. +... .-|.......++....-
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 3 5777888755554432 222333333332 2110 11222222222211111
Q ss_pred --------------------------------cCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 127 --------------------------------QNDKETAEKAFLELKKTKID----PDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 127 --------------------------------~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
..+.+++..+.+.+....+. .=..++..++....+.++...|.+
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 01233333333333222110 012344555555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHH-------HHHHHHH-cC---CChHHHHHHHHHHHHcccccChhhHHHHH---HHHHhcCC-h
Q 014978 171 TLKEMEKRTCRKNRVAYS-------SLLSLYT-NM---GYKDEVLRIWKKMMSLFAKMNDAEYTCVI---SSLVKLGE-F 235 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~-------~l~~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~ 235 (415)
.+.-+... .|+...-. .+-+..+ .- -+...=+.+|+.....++. .......++ .-+.+.|. -
T Consensus 320 ~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~d 396 (549)
T PF07079_consen 320 YLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCD 396 (549)
T ss_pred HHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCcc
Confidence 66555443 23322111 1111111 11 1122233444444443332 111122222 23445565 8
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHH----HHHHh---cCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHH--HHhc
Q 014978 236 EKAENIYDEWESISGTGDPRVPNILL----AAYIN---RNQLEMAESFYNRLVTKGIKPCY----TTWELLTWG--YLKK 302 (415)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~ 302 (415)
++|..+++.+.+.. +-|..+-|.+. .+|.+ ...+.+-.++-+-+.+.|+.|-. ..-|.+.++ +...
T Consensus 397 ekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq 475 (549)
T PF07079_consen 397 EKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ 475 (549)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence 89999999998764 33444444322 23333 34566666666667788887633 344444443 4578
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 369 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 369 (415)
|++.++.-.-....+ +.|++.+|..+.-++....++++|..++..+.-..-. +..+-.+++-+
T Consensus 476 gey~kc~~ys~WL~~----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTK----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALC 539 (549)
T ss_pred ccHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 999999887777655 8899999999999999999999999999998542222 33444444433
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.059 Score=49.42 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH-------
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR------- 327 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~------- 327 (415)
.+...+..-+.+...+..|-++|..|-+ ...+++.....++|++|..+-+..- .+.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc----cccccccchHHHHh
Confidence 3444444444455666667777766543 2245556667777777777766543 2444432
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 328 ----LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 328 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
-|...-.+|.+.|+..+|.++++++....+
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 233444678888888999999888876543
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.002 Score=48.32 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=56.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 129 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (415)
....-+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|.......+.|...+-....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33444556677777777777666554 23444455555566666677777777666544444555556666667777777
Q ss_pred HHHHHHHHHHHHhC
Q 014978 130 KETAEKAFLELKKT 143 (415)
Q Consensus 130 ~~~a~~~~~~~~~~ 143 (415)
.+.|...|......
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777666653
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0015 Score=42.55 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=19.8
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
.+.+++++|.++++.+.+..|.+...|.....++.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333344444443333333
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0033 Score=51.27 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---cccHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHML 87 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 87 (415)
.|..++.+.+.|++..|...|....+..|+ +.++-.|..++...|+++.|..+|..+.+.- +.+ +..+--|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHHHH
Confidence 566667777777777777777766666552 4566667777777777777777776666531 111 23444455
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHh
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVV 115 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (415)
.+..+.|+.++|..+|+++.+..|.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5666666677777777776666554443
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.17 Score=47.05 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 69 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 69 (415)
|.....++-..+--|++++|.+++-.+.++ ..-|..+.+.|++-.+.++++
T Consensus 734 ~s~~~q~aei~~~~g~feeaek~yld~drr-------DLAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 734 HSKEQQRAEISAFYGEFEEAEKLYLDADRR-------DLAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred hhHHHHhHhHhhhhcchhHhhhhhhccchh-------hhhHHHHHhhhhHHHHHHHHH
Confidence 333444444445567888888888776663 223455556666666655554
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.039 Score=45.68 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+..+......|++.+|...|..+....| +..+--.++.+|...|+++.|..++..+....-.........-+..+.+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 3444444555566666665555555433 344445555555566666666666555543321111111112233444444
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
...+...+-..+.. .|.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 218 ~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 218 ATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred cCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433332 24455555555555555555555555444443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0049 Score=40.05 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|.+.+++++|.++++.++.. .+.+...+......+...|++++|...|+...+.+|.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 455666666666666666651 233445555555666666666666666666666655543
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.15 Score=44.48 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRT---CRKNRVAYSSLLSLYTN---MGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
..++-+|....+++...++++.+.... +..+...-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344555777777777777777776531 11112222233444555 677777777777755555556666777666
Q ss_pred HHHHh---------cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH----HHHHHHH---HH-HHhCCC---C
Q 014978 227 SSLVK---------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL----EMAESFY---NR-LVTKGI---K 286 (415)
Q Consensus 227 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~~~~---~ 286 (415)
+.|-. ....++|...|.+.-+. .|+...--.++..+.-.|.. .+..++- .. +.++|. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65532 12356666666655443 24433322333333333321 1222222 22 222332 3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.+...+..++.++.-.|+.++|.+..++|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4666777888999999999999999999987
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.08 E-value=0.0038 Score=41.23 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+++.+...|...|++++|+..|+++++......++ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777776532122222 34566677777778888888887777654
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.049 Score=47.71 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+|+..+..-.+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+--....+.+...-+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444444444444555555555555444 3344445554444333 244455555554433333333333344444445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 126 SQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..++-+.|..+|+..+.+ +..+ ...|..++.-=..-|+...+..+=+.+..
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555555555555533322 1111 22444444444444444444444444433
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.00 E-value=0.019 Score=41.76 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=66.9
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
..++..++.++++.|+++....+++..-. +.++... ..+. ........|+..+..+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~-----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD-----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc-----------cCCCCCCCCCHHHHHHHH
Confidence 45666777777777777777766655432 2211100 0000 112256789999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHhcCC
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNA-GHV-STEIYNSLLRTYAKAGK 375 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~ 375 (415)
.+|+..|++..|.++.+.+.+. +++ |..+|..|++-....-+
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999988774 333 67889999887765544
No 223
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.23 Score=42.91 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... . -++.-|..++.+|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------K--KSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------C--CCCCChHHHHHHHH
Confidence 333444555566555555544442 25556666666666666666655544321 1 11244555566666
Q ss_pred HcCChhHHHHHHHH
Q 014978 338 EQGDIDGAEHLLVT 351 (415)
Q Consensus 338 ~~g~~~~a~~~~~~ 351 (415)
+.|+..+|..+..+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 66666666655555
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.19 Score=41.80 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555554442 2223344445555555555555555555544
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.15 Score=41.05 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhh
Q 014978 86 MLNLYISNGQLDKVPQMLQELKK 108 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~ 108 (415)
...+|-...++++|...+.+..+
T Consensus 37 AAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 33444555555555555555443
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.89 E-value=0.22 Score=42.31 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=63.8
Q ss_pred HHhhhhHHHHHHHHhcCcCC--CCcch-------HHHHHHHHHhcC-cHHHHHHHHHHHHhc----C----CCCCc----
Q 014978 23 AQALQTRARENFFENLPDKM--RGPDT-------CSALLHSYVQNK-KSAEAEALMEKMSEC----G----FLKCP---- 80 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~--~~~~~-------~~~li~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~~---- 80 (415)
.+.|+.+.|..++.++.... .++.. +-.+.......+ +++.|...+++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876642 13322 222333334455 777776666654332 1 11111
Q ss_pred -ccHHHHHHHHHhcCCcC---cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 81 -LPYNHMLNLYISNGQLD---KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 81 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.++..++.++...+..+ +|..+++.+....+.....+..-+.++.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23344455555544433 3444444444444444455555555555566666666666666654
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.38 Score=44.87 Aligned_cols=332 Identities=11% Similarity=0.098 Sum_probs=151.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH----------HH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML----------NL 89 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~ 89 (415)
..+...-.+++|.++.+ ..|.+..|..+...-...-.++.|...|-+.... +.......|- ..
T Consensus 671 ~~Lve~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 671 MNLVEAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhH
Confidence 34455556677776654 3477777877777777766777777666554432 1111111111 11
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
-.--|++++|.++|-.+.++ ...+....+.|+|-...++++.--... -..-...++.+...+.....|++|
T Consensus 744 ~~~~g~feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhhhcchhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11236666666666554322 112333334444433333332110000 000011223333333322222222
Q ss_pred HHHHHH-------------------HH--hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 169 ATTLKE-------------------ME--KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 169 ~~~~~~-------------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
.+.|.. +. ...++.+....-.+..++.+.|.-++|.+.+-+.- .|. ..+.
T Consensus 816 ~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~ 886 (1189)
T KOG2041|consen 816 AKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVH 886 (1189)
T ss_pred HHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHH
Confidence 222211 11 01234455666677788888888888777664431 121 2345
Q ss_pred HHHhcCChHHHHHHHHHHHhccC-----------CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh----CCCCCCHh--
Q 014978 228 SLVKLGEFEKAENIYDEWESISG-----------TGDPRVPNILLAAYINRNQLEMAESFYNRLVT----KGIKPCYT-- 290 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-- 290 (415)
.|...++|.+|.++-+...-..+ -.+..+ .--|..+.+.|+.-.|.+++.+|.+ ++.+|-..
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kk 965 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKK 965 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHH
Confidence 66666677666665543211000 001111 1235566677776667777766643 23322111
Q ss_pred HH--HH-HHHHH----------HhcCCHHHHHHHHHHhHhcc-cCCC------CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 291 TW--EL-LTWGY----------LKKGQMEKVLECFKKAIGSV-RKWV------PDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 291 ~~--~~-l~~~~----------~~~~~~~~a~~~~~~~~~~~-~~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
.| .+ |+.-+ -..|..++|..+++...... ..+. .....|-.|.+--...|.++.|.+.--
T Consensus 966 lYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 966 LYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 11 11 11111 12355555555443322100 0000 112233444444556788888887665
Q ss_pred HHHHc-CCC-CHHHHHHHHHHHHhcCCC
Q 014978 351 TLRNA-GHV-STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 351 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 376 (415)
.+.+. ++. |.++|..|.-+-|....+
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 55542 233 447777766665555444
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.017 Score=43.53 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=63.5
Q ss_pred HHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 89 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
-+-..|++++|..+|.-+.-..+.+...|..|..++-..+++++|...|......+ .-|+..+-....+|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34557888888888887766666677777777788888888888888887766554 23444555667777778888888
Q ss_pred HHHHHHHHh
Q 014978 169 ATTLKEMEK 177 (415)
Q Consensus 169 ~~~~~~~~~ 177 (415)
...|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777765
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0044 Score=40.94 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKT----KI-DPD-WISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
+++.+..+|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555544422 10 011 224444455555555555555555443
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.81 E-value=0.0055 Score=35.09 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
.++..+..+|...|++++|+++|+++.+..|.+...|..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888877776653
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.77 E-value=0.43 Score=43.74 Aligned_cols=335 Identities=10% Similarity=0.078 Sum_probs=186.7
Q ss_pred HHHHHHHHhcCcCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCCcCcHHHHHHHH
Q 014978 29 RARENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQMLQEL 106 (415)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 106 (415)
+.+...+..+....|-.. -|......-.+.|..+.+.++|++.+. |++.+...|......+. ..|+.+...+.|+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555566666665556543 455666666788889999999998886 46666667766665443 356677777778777
Q ss_pred hhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---c------CCHHHHHHHHHH
Q 014978 107 KKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK---M------ELPEKAATTLKE 174 (415)
Q Consensus 107 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~ 174 (415)
... .-.+...|...|..-..++++.....++++.++... ..|+..-.-|.+ . ...+++.++-..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 654 233456788888888888899999999998876411 111111111111 0 011111111111
Q ss_pred HH----------------------------------------hc---------------------------CC----CCC
Q 014978 175 ME----------------------------------------KR---------------------------TC----RKN 183 (415)
Q Consensus 175 ~~----------------------------------------~~---------------------------~~----~~~ 183 (415)
.. .. .+ +++
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aq 296 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQ 296 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHH
Confidence 00 00 01 112
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 263 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (415)
..+|...+..-...|+.+.+.-+|+...-- ...-...|-..+.-....|+.+.|..++....+.-.+ +......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 334444455555555555555555554321 0001112222333333446666666666655544322 32222222223
Q ss_pred HH-hcCcHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHH---HHHHHhHhcccCCCCCHHHHHHHHH----
Q 014978 264 YI-NRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVL---ECFKKAIGSVRKWVPDHRLITAAYN---- 334 (415)
Q Consensus 264 ~~-~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~p~~~~~~~l~~---- 334 (415)
+. ..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++..... ..-+..+...+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~----~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE----GKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc----cccCcchhHHHHHHHHH
Confidence 33 3578999999998888753 5433 2222334456677777777 33333332 1222222222222
Q ss_pred -HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 335 -KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 335 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.+.-.++.+.|..++.++.+.-+.+...|..+++.....+..
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 134468899999999999999888888999999888777643
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.73 E-value=0.25 Score=40.49 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=113.6
Q ss_pred CcHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCCcCcHHHHHHHHhh--cCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEK 135 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (415)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444443211 0133444455555555555555555555443 234444555555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 136 AFLELKKTKIDPDWISYSTLTS-LYIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543222 112222222 56666666666666666644210 01222333333335556666777776666665
Q ss_pred cccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 213 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 422112445555666666666777777777666654311 1233333444444555677777777766654
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.018 Score=49.67 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
-.|..+.+.|++..|...|+.+...-. |...-+.++...... .-..++..+..++.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 345567788888888888777554311 000011111111111 1123455666667777777
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE-KAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 175 (415)
..|++..++.....++|+...-.-..++...|+++.|+..|+++.+.. +.|-..-+.++.+-.+..... ...++|..|
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666667777777777777777777777777777776652 223334444444444444333 335566666
Q ss_pred Hh
Q 014978 176 EK 177 (415)
Q Consensus 176 ~~ 177 (415)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.079 Score=43.47 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.|+.-+.. .+.|++..|...|...++..+.- ....+-.|..++...|++++|...|..+.+....-+--+..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 45677888888888887754211 1234556778888888888888888888875333333447777888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
....+.|+.++|..+|+++.+.-|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 888888889999999888888766643
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.032 Score=48.18 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
.++..+..+|.+.+++..|+......+. --++|......=..+|...|+++.|+..|+++.+..|.+..+-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4566777888899999999999999887 3466777777788889999999999999999999988888777777777
Q ss_pred HHhcCCC---cHHHHHHHHh
Q 014978 370 YAKAGKM---PLIIVERMQK 386 (415)
Q Consensus 370 ~~~~g~~---a~~~~~~m~~ 386 (415)
-.+..++ +..+|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 7666555 4667777754
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.037 Score=40.20 Aligned_cols=98 Identities=6% Similarity=-0.014 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 297 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 297 (415)
|..++..++.++++.|+.+....+++..-. +..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345677777788888888877777765432 2221100 0000 1123345677777777777
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+|+..|++..|+++.+...+. .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 777777777777777766665 44666667777666543
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.64 E-value=0.024 Score=40.50 Aligned_cols=93 Identities=13% Similarity=-0.024 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc---HHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~ 90 (415)
.-..++.++..|+.+.|++.|.+....-| .+.+||.-..++.-.|+.++|++-+++..+..-..+... |..-...|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34556677777777777777777666544 567777777777777777777777777665421112111 22222334
Q ss_pred HhcCCcCcHHHHHHHHh
Q 014978 91 ISNGQLDKVPQMLQELK 107 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~ 107 (415)
-..|+.+.|..-|+...
T Consensus 126 Rl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAA 142 (175)
T ss_pred HHhCchHHHHHhHHHHH
Confidence 44566666665555543
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.17 Score=40.66 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...|..-..+|....+|++|...+.+..+. ...+...|+. . ..++.|.-+.+++.+. +.-+..|+-....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~kl-sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSKL-SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 345677778888899999999988877642 2233333322 1 2233444444444331 22333455555667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHcCCC
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR---T--CRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 199 (415)
...|.++.|-..+++.-+. .+..++++|+++|++...- + ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666654322 1223445555555544321 0 00011223444455566666
Q ss_pred hHHHHHHHHHHHHccc----ccCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHhcCcHH
Q 014978 200 KDEVLRIWKKMMSLFA----KMND-AEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLE 271 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 271 (415)
+++|-..+.+-..... -++. ..|...|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 6655544443222111 1111 124445555666677778887777643321 122344555666665 456666
Q ss_pred HHHHHH
Q 014978 272 MAESFY 277 (415)
Q Consensus 272 ~a~~~~ 277 (415)
++.++.
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 665554
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.19 Score=42.45 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=53.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH----hHHHHHHHHHHhcCCHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKETA 133 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 133 (415)
.|++.+|-..++++++. .|.|...+...=.++...|+...-...++++...-.++. ..-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 44455555555555443 233444444444455555555555555554443322222 1222233344445555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++.-++..+.+ +.|...-.++...+-..|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555443 33444444555555555555555554443
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.044 Score=48.51 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCCcCcHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQELK 107 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (415)
.|+.+..+|.+.|++++|+..|++.++.+ |+.. +|..+..+|...|+.++|++.+++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444332 2211 23344444444444444444444433
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.25 Score=41.77 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT---KIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+.-.|++.+|...++++.+..|.|..+++-.=.+|.-.|+.+.-...++++... ++|-.......+.-++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 445788999999999999999999999999999999999999999999988755 22222233344556677899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
+|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...--.. -...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998875 5577777788888889999999998876543321100 01112222334556689999999998
Q ss_pred H
Q 014978 244 E 244 (415)
Q Consensus 244 ~ 244 (415)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.12 Score=45.92 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=54.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888899998888888877 4443 35788888888888888888888888774
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.33 Score=44.68 Aligned_cols=176 Identities=15% Similarity=0.073 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-cccChh------hHHHHHHHHHh----cCChHH
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMNDA------EYTCVISSLVK----LGEFEK 237 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~l~~~~~~----~g~~~~ 237 (415)
.-+|.-+... +||. +..+++...-.|+-+.+++.+.+..+.+ +. ... .|...+..++. ..+.+.
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 3445555544 3443 3456777777899999999988876642 22 111 34444444433 456788
Q ss_pred HHHHHHHHHhccCCCCCchHHHH-HHHHHhcCcHHHHHHHHHHHHhCC--C-CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 238 AENIYDEWESISGTGDPRVPNIL-LAAYINRNQLEMAESFYNRLVTKG--I-KPCYTTWELLTWGYLKKGQMEKVLECFK 313 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 313 (415)
|.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... . +.....+--+...+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999998875 4566655543 456667899999999999765421 1 1233455566777888999999999999
Q ss_pred HhHhcccCCCCCHHHHHHHHHH-HHHcCCh-------hHHHHHHHHHHH
Q 014978 314 KAIGSVRKWVPDHRLITAAYNK-LEEQGDI-------DGAEHLLVTLRN 354 (415)
Q Consensus 314 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 354 (415)
.+.+. -..+..+|.-+..+ +...|+. ++|..+|+++..
T Consensus 330 ~L~~~---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKE---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhc---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99873 23344444444433 4456777 888888887654
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.50 E-value=0.12 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.|..|.......|+++.|++.|.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444444444444443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.22 Score=45.82 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcC-CCCH------hHHHHHHHHHHh----cCCHH
Q 014978 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDV------VTYNLWLAACAS----QNDKE 131 (415)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~ 131 (415)
-..-+|.-+.+. +|| ....++....-.|+-+.+++.+.+..+.. -... -.|...+..++- ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344566666654 333 45667777777888888888888765531 1111 224444443333 45778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYST-LTSLYIKMELPEKAATTLKEMEKR--TC-RKNRVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.... .. +.....+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 999999999887 566665543 456677789999999999976531 11 112334445666777889999999999
Q ss_pred HHHHHcccccChhhHHHHHH-HHHhcCCh-------HHHHHHHHHHHh
Q 014978 208 KKMMSLFAKMNDAEYTCVIS-SLVKLGEF-------EKAENIYDEWES 247 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~ 247 (415)
..+.+... .+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99988643 24444544433 34557777 889999988754
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.48 E-value=0.23 Score=37.10 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 014978 223 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 302 (415)
Q Consensus 223 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 302 (415)
..++..+...+.......+++.+...+ ..+....+.++..|++.+. .+....+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555556666666666655554 2455566666666665432 233333331 11233344455666666
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
+-++++..++.++-. +...+..+... ++++.|.+++++ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666655422 11122222223 566666666554 124556666665554
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.46 E-value=0.13 Score=47.31 Aligned_cols=182 Identities=11% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHH-----HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSAL-----LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.+..++-+|++.+|.++|.+-.........|+-| .+-+...|..++-..+.++-.+.. -+..-=......+..
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLIS 715 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhc
Confidence 3344455666666666666554433222233221 223334444444333333222110 111111233445556
Q ss_pred cCCcCcHHHHHHH---------Hhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 93 NGQLDKVPQMLQE---------LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 93 ~~~~~~a~~~~~~---------~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
.|+.++|..+.-. +... ...+..+...+...+.+...+..|-++|..|-+. ..++......
T Consensus 716 aGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~ 786 (1081)
T KOG1538|consen 716 AGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVET 786 (1081)
T ss_pred ccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeec
Confidence 6666666554321 1111 3445555666666666666667777777666432 2456666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRV-----------AYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++|++|..+-+...+. .||+. -|...-.+|.+.|+..+|..+++++..
T Consensus 787 ~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 7777777777665543 23321 122233445555555555555555433
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.04 Score=49.79 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=90.9
Q ss_pred HHHHhhhhHHHHHHHH--hcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 21 AQAQALQTRARENFFE--NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
...-.|+++++.+..+ .+...-| ..-.+.++..+-+.|-++.|+++..+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 3455677777655554 2222112 4456777777778888888877654322 23455666777777
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
|.++.++. ++...|..|.....+.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 337 A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77665443 3666888888888888888888888876542 456666777778877777777666655
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
| -++....++...|+.++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 134444455555777777666554
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.43 E-value=0.4 Score=39.16 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC---
Q 014978 159 YIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG--- 233 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 233 (415)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.++++.|+...++.....+.....-|..-+.+++.--
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 4456777777777777765411 11233444556666677777777777777766544333333443444433211
Q ss_pred ----ChHH---HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 234 ----EFEK---AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 234 ----~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
|... |..-|+.+... -||+ .=...|..-...+... + ..-=..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcChH
Confidence 1111 11112222211 1111 1111111111111100 0 000013445678888899
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.|..-++++++.-....-....+-.+..+|...|-.++|.+.-+-+....+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 9999999888832222223345666777888888888888876655544443
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.25 Score=37.54 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDT---CSALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
.|..++..++.|..++|+.-|..+.+.+-.... --.......+.|+...|...|+++-.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 444455555555555555555555443211111 11112223445555555555555543
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.15 Score=43.57 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHH----HHHhcC-CCCCcccHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALME----KMSECG-FLKCPLPYN 84 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~ 84 (415)
.....+..+....+.++|+..+.+....-.+ ..+|..+..+.++.|++++++..-- -..+.. -.---..|.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999988876664222 3467778888999999988765322 111110 000123455
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhc--CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--CCHHHHHH
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKN--TSP---DVVTYNLWLAACASQNDKETAEKAFLELKKTKI---D--PDWISYST 154 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~--~~~~~~~~ 154 (415)
.+.+++-+..++.+++.+-+.-... ..+ --....++..++...+.++.+++.|+...+.-. . ....++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 5556666666677777666654332 111 113345567777788889999999988764311 1 12347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHc----ccccC-hh
Q 014978 155 LTSLYIKMELPEKAATTLKEMEK----RTCRKNRV-----AYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMN-DA 220 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 220 (415)
|...|.+..++++|.-+..+..+ .++..-.. ....|.-++...|+..+|.+.-++..+. |..+. ..
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999877665543 22221111 1223455677788888888887776543 32221 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
....+...|...|+.+.|+.-|++..
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 34567778889999999988888754
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.34 E-value=0.26 Score=42.12 Aligned_cols=227 Identities=13% Similarity=0.047 Sum_probs=119.1
Q ss_pred HHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHH----HHHhCC-CCCCHHHHHHHHHHHHh
Q 014978 90 YISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFL----ELKKTK-IDPDWISYSTLTSLYIK 161 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~g-~~~~~~~~~~l~~~~~~ 161 (415)
+....+.++|+..+.+.... ...-..++..+..+.+..|.+++++..-- -..+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777765543 12223456667777777777776654321 111110 01112344445555555
Q ss_pred cCCHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-----cChhhHHHHHHHHHhc
Q 014978 162 MELPEKAATTLKEMEKR-TCRK---NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-----MNDAEYTCVISSLVKL 232 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 232 (415)
.-++.+++.+-..-... |..| ......++..++...+.++++++.|+...+.-.. ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433221 1111 1122334556666677778888877776553211 1223577777777777
Q ss_pred CChHHHHHHHHHHHhc----cCCCCC-chHH-----HHHHHHHhcCcHHHHHHHHHHHH----hCCCCC-CHhHHHHHHH
Q 014978 233 GEFEKAENIYDEWESI----SGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLV----TKGIKP-CYTTWELLTW 297 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~----~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p-~~~~~~~l~~ 297 (415)
.|+++|.-+..+..+. ++. |. ..|. .|.-++...|.+..|.+.-++.. ..|-+| .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7877777666654432 211 21 1122 23334555666666666665543 333222 1123335556
Q ss_pred HHHhcCCHHHHHHHHHHhHh
Q 014978 298 GYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|...|+.+.|+.-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66777777777777777654
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.33 E-value=0.36 Score=38.16 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH--HHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM--LNLYI 91 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 91 (415)
.|-.|+-+-.-|-+.-|+--|.......|+ +.+||.|.--+...|+++.|.+.|+...+.+ |. .-|..+ .-++-
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~Y 144 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALY 144 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeee
Confidence 344455555555556666666655555553 4566666666666777777777777666654 21 112211 11223
Q ss_pred hcCCcCcHHHHHHHHhhc
Q 014978 92 SNGQLDKVPQMLQELKKN 109 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (415)
--|++.-|.+-+.+.-+.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred ecCchHhhHHHHHHHHhc
Confidence 346666666655555443
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.31 E-value=0.58 Score=39.81 Aligned_cols=225 Identities=16% Similarity=0.070 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcC-CHHHHHHHHHHHHhc--------CCCCCH---
Q 014978 125 ASQNDKETAEKAFLELKKTK--IDPDWI------SYSTLTSLYIKME-LPEKAATTLKEMEKR--------TCRKNR--- 184 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 184 (415)
.+.|+.+.|..++.+....- ..|+.. .|+. .....+.+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35666777777776665432 122211 1222 22233344 777776666654432 112222
Q ss_pred --HHHHHHHHHHHcCCChH---HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 185 --VAYSSLLSLYTNMGYKD---EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 185 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
.+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+.+..|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 34566777777777654 455566666544332 23345455666666788888888888887653 213344444
Q ss_pred HHHHHHh--cCcHHHHHHHHHHHHhCCCCCCHh-HHHHH-H---HHHHhcCC------HHHHHHHHHHhHhcccCCCCCH
Q 014978 260 LLAAYIN--RNQLEMAESFYNRLVTKGIKPCYT-TWELL-T---WGYLKKGQ------MEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 260 l~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~~~------~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
++..+.. ......+...+..++...+.|... ....+ + ....+.++ .+....++...... .+.+.+.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCCH
Confidence 4444422 223445666666665444444443 11111 1 11122222 34444444432221 2333344
Q ss_pred HHHHHHH-------HHHHHcCChhHHHHHHHHHH
Q 014978 327 RLITAAY-------NKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 327 ~~~~~l~-------~~~~~~g~~~~a~~~~~~~~ 353 (415)
.+-..+. ..+.+.++++.|.+.|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4333322 23556788999988887554
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=96.29 E-value=0.22 Score=44.37 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=96.7
Q ss_pred HHHHHHHHH---HhhhhHHHHHHHHhcC---cCCCC-cchHHHHHHHHHh---------cCcHHHHHHHHHHHHhcCCCC
Q 014978 15 SYRQRVAQA---QALQTRARENFFENLP---DKMRG-PDTCSALLHSYVQ---------NKKSAEAEALMEKMSECGFLK 78 (415)
Q Consensus 15 ~~~~~~~~~---~~g~~~~A~~~~~~~~---~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~ 78 (415)
.+..|.... ..-..+.|+.+|..+. ...|+ ..+|..+..++.. ..+..+|.++-+...+.+ +.
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~ 336 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV 336 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC
Confidence 344444442 2335667888888888 44453 4445444433321 234456667777777766 45
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTS 157 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~ 157 (415)
|+.+...+..++...++++.|...|++.....|....+|....-.+.-.|+.++|.+.+++..+.. ...........++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 666666666766777778888888888777667777777777777777888888888888766552 1112223333444
Q ss_pred HHHhcCCHHHHHHHHHH
Q 014978 158 LYIKMELPEKAATTLKE 174 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~ 174 (415)
.|+.. ..+.|.+++-+
T Consensus 417 ~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 417 MYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHcCC-chhhhHHHHhh
Confidence 55543 35666666544
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.21 Score=35.91 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=68.4
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI---SYSTLTSLYIKMEL 164 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~ 164 (415)
-+++..|+.+.|++.|.+.....|.....||.-..++.-.|+.++|++=+++..+..-+.+.. .|.--...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356778888889888888877778888888888888888888888888888887653222222 23334455677788
Q ss_pred HHHHHHHHHHHHhcC
Q 014978 165 PEKAATTLKEMEKRT 179 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~ 179 (415)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777765
No 257
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=1.1 Score=42.26 Aligned_cols=306 Identities=11% Similarity=0.030 Sum_probs=167.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-C--CCCHhHHHHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-T--SPDVVTYNLWLAACA 125 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~l~~~~~ 125 (415)
..+|.-+...+.+..|+++-..+...-.. ....|.....-+.+..+. .=.++++.+.+. . .....+|..++.-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 34566677788888888887776542111 145566666666655322 223444444443 1 134557888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKID----PDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----------TCRKNRVAYSSL 190 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 190 (415)
..|+++.|..+++.=...+.. .+..-+...+.-..+.|+.+....++-.+..+ ..+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 899999998887643332211 11222344555566677777766666655442 111111222222
Q ss_pred HH--------HHHcCCChHHHHHHHHH-H-HHc-ccccChhhHHHHHHHHHhcCChHHHHH----------HHHHHHh-c
Q 014978 191 LS--------LYTNMGYKDEVLRIWKK-M-MSL-FAKMNDAEYTCVISSLVKLGEFEKAEN----------IYDEWES-I 248 (415)
Q Consensus 191 ~~--------~~~~~~~~~~a~~~~~~-~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~----------~~~~~~~-~ 248 (415)
++ .+.+.++-.++..-|.. - ... -+.+-..........+.+.....-..+ +.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 01111222222211110 0 000 011111123333444444433221111 1122211 2
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
+.....-+.+--+..+...|+..+|.++-.+.. -||-..|..=+.+++..+++++-+++-+...+ +.-
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--------PIG 746 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--------PIG 746 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------CCC
Confidence 222333455556677788899999998877765 47888999999999999999987777665322 345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
|..++.+|.+.|+.++|.+++-+..... -...+|.+.|++
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDV 786 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccH
Confidence 6678889999999999999887664321 455666666665
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.17 E-value=0.36 Score=36.07 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 014978 225 VISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~ 244 (415)
+++.|.+.+-++++..++..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444444444444444443
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.15 E-value=0.31 Score=35.14 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
....+..+...|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555554432 45555555556666666666666666665555553
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.13 E-value=0.6 Score=41.94 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
.+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455566666666666666543211 12224445666666666666666666654
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=96.09 E-value=1 Score=40.43 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=58.9
Q ss_pred CcHHHHHHHHh---hcCCCCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 97 DKVPQMLQELK---KNTSPDVVTYNLWLAACASQ---------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 97 ~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
+.|+.+|.+.. ...|.....|..+..++... .+..+|.++-++..+.+ +.|+.....+..+..-.++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 45555666655 22333344444444433221 23344555555555554 4455555555555555566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++.|..+|++....+ +....+|....-.+.-.|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666542 22233444444444555666666666666554
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.07 E-value=0.8 Score=39.14 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh--cC----CcCcHHHHHHHHhhc----CCCCHhHHHHHHHHHHhcCCH
Q 014978 61 SAEAEALMEKMSECGFLKCPLPYNHMLNLYIS--NG----QLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 130 (415)
+++...+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++. ..++-.++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788889999988887666554333333 11 245778888888876 23344444444433 33333
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 131 ----ETAEKAFLELKKTKIDPDWI--SYSTLTSLYIKMEL--PEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 131 ----~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+.++.+|+.+.+.|+..+.. ..+.++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 55677777777777554433 22222222222222 3466777777877777777766665543
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.05 E-value=0.13 Score=37.96 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=28.3
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP---DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
..+.|++++|.+.|+.+..+.|. ...+--.++.++.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555555554222 2233444555555556666666555555554
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.96 E-value=0.014 Score=33.43 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
..+...|...|++++|.++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.93 E-value=0.087 Score=43.24 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 014978 111 SPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAA 169 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 169 (415)
..|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3345555555554433 3456666667777888888888888888887765432 223466
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCh
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (415)
+++++|...|+.||..+-..+++++.+.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 7777777777777777777777777666554
No 266
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.58 E-value=2.4 Score=40.86 Aligned_cols=319 Identities=13% Similarity=0.039 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLY 90 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 90 (415)
...|..+....+.|++..+.++...+.+....+ ..|..+... .....+++....+++-.. .|-. ..-...+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT---LPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHH
Confidence 346778888889999999888888775421111 122222221 123345554444443221 1211 1122233345
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA-- 168 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a-- 168 (415)
.+.+++...+.++ ...|.+...-...+.+....|+.++|....+.+-..| ...+..++.++..+.+.|.+...
T Consensus 110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 5555665555422 2235566666777788888898887877777776555 34456677777777766654332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc------------CCChHHHHHHHHHHHHcccccChhhHHHHHHHH--HhcCC
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTN------------MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL--VKLGE 234 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 234 (415)
.+-++.+...| +...-..+...+.. ..++..+...+.. +.|+...-..++.++ ....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence 22222222222 11111122221100 0111111111111 112221111111122 23445
Q ss_pred hHHHHHHHHHHHhcc-CCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 235 FEKAENIYDEWESIS-GTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
.+.|..++....... ..+. ..+...+.......+..+++...++...... .+......-+....+.++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 677777777654332 1111 1123333333333322455666665544321 2334444444455577788777777
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
+..|-.. ..-...-..-+..++...|+.++|..+|+.+.
T Consensus 335 i~~L~~~---~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPME---AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHh---hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7776542 22233334445566666788888888877764
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.56 E-value=0.19 Score=41.94 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVL 399 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l 399 (415)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+. +...++.+. ..|+.|...+..++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777788888899999999999988888888999999999999888 455555554 47999999888655
Q ss_pred HHh
Q 014978 400 KIT 402 (415)
Q Consensus 400 ~~~ 402 (415)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.55 E-value=1.1 Score=36.61 Aligned_cols=204 Identities=20% Similarity=0.139 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH-
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS- 227 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 227 (415)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555555555555555444431 112233344444444444555555555555554432221 111111122
Q ss_pred HHHhcCChHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH
Q 014978 228 SLVKLGEFEKAENIYDEWESISG--TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 305 (415)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555566666555555533111 0111222222233444556666666666655532110244555555566666666
Q ss_pred HHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 306 EKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+.+...+..... ..|+ ...+..+...+...+..+.+...+.......+.
T Consensus 219 ~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALE----LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666666655 2222 333333333333555566666666666555443
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.53 E-value=3.1 Score=41.81 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcC-----CCCcchHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcc--cH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDK-----MRGPDTCSALLHSYVQ-NKKSAEAEALMEKMSECGFLKCPL--PY 83 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~--~~ 83 (415)
|...+..--.+.+.+++.+|.++-.+-.-. .-++..+-.-+.++.+ .++.+-...++..+...++..+.. ++
T Consensus 677 R~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~ 756 (1265)
T KOG1920|consen 677 RILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTS 756 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccc
Confidence 444555555678888888888776654332 1234555555556654 455555555555555443222111 01
Q ss_pred HHHHHHHHhc----CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 014978 84 NHMLNLYISN----GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN--DKETAEKAFLELKK 142 (415)
Q Consensus 84 ~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 142 (415)
.+-...|... .+.+...+.+.....+..|+ .....++..|.+.+ .++.+++...+...
T Consensus 757 ~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 757 GSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cccceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1110111111 12233333333333345555 45566778888877 66777777766664
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.4 Score=40.26 Aligned_cols=304 Identities=12% Similarity=0.110 Sum_probs=176.6
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCC---cchHHHHHHHHHhcCcH--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 21 AQAQALQTRARENFFENLPDKMRG---PDTCSALLHSYVQNKKS--AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
.+...+.+..|+++-..+.. |. ..+|.....-+.+..+. +++.+.+++=.+.-. -+...|..+.+-....|+
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGR 522 (829)
T ss_pred HHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCc
Confidence 34677889999999888766 43 45566666666655322 223333332222212 344567778877778899
Q ss_pred cCcHHHHHHHHhhc-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHH--
Q 014978 96 LDKVPQMLQELKKN-----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-----------IDPDWISYSTLTS-- 157 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~-- 157 (415)
++-|..+++.=... .--+..-+...+.-+...|+.+....++-++...- .+.....|.-+++
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~ 602 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQ 602 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhh
Confidence 99998887652211 11133345566667777888887777776665431 1111112222221
Q ss_pred ------HHHhcCCHHHHHHHH--HHHH----hcCCCCCHHHHHHHHHHHHcCCChH---HH-------HHHHHHHHHc-c
Q 014978 158 ------LYIKMELPEKAATTL--KEME----KRTCRKNRVAYSSLLSLYTNMGYKD---EV-------LRIWKKMMSL-F 214 (415)
Q Consensus 158 ------~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~~~~~-~ 214 (415)
.+.+.++-.++...| +... ..|..|+. .....++.+..... +| +.+.+.+... |
T Consensus 603 ~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 603 DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011112222222211 1100 01222332 23344444443321 11 1222222221 2
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
......+.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.++...+++++.+++-+... .+.-|.-
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 23344456666777888999999998877653 5688888888999999999988777655443 2566888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+...|.+.|+.++|.+++-+.-. .. -...+|.+.|++.+|.+.--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-------l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-------LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-------hH----HHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999999876422 11 567788999999998876544
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.22 E-value=0.95 Score=35.37 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH---HH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT---CV 225 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 225 (415)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+...+.+....-..+...... ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 566677777777777777777777766533332 2335566677777777777777766665432221111111 11
Q ss_pred --HHHHHhcCChHHHHHHHHHH
Q 014978 226 --ISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 226 --~~~~~~~g~~~~a~~~~~~~ 245 (415)
.-.+...+++..|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11223456777776666554
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.98 E-value=0.94 Score=32.79 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=79.2
Q ss_pred HcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHH
Q 014978 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
.-.|..++..++..+..... +..-++.+|--....-+-+-..+.++.+-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 34577777788777776542 334455555444444455555555555433 22221 233333333
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+-.+ | .+.......+..+..+|+-+.-.+++.+... .-.+++.....+..+|.+.|+..++.+++.++-+
T Consensus 77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKK---NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 332221 1 1345556667788888988888888888764 3467888888999999999999999999999988
Q ss_pred cCCC
Q 014978 355 AGHV 358 (415)
Q Consensus 355 ~~~~ 358 (415)
.|..
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8875
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.96 E-value=0.25 Score=41.25 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAY 187 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 187 (415)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567778888888888888888888888774 55777888888888888888888888877765 5777887777
Q ss_pred HHHHHHH
Q 014978 188 SSLLSLY 194 (415)
Q Consensus 188 ~~l~~~~ 194 (415)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 6666663
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.85 E-value=0.35 Score=39.90 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------------ChHHHHH
Q 014978 147 PDWISYSTLTSLYIK-----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG----------------YKDEVLR 205 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 205 (415)
-|-.+|...+..+.. .+.++-....+..|.+.|+.-|..+|+.|+..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345555555555543 3556666677788888999999999999988765432 2245788
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEF-EKAENIYDEW 245 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 245 (415)
++++|...|+.||..+-..+++++.+.+-. .+..++.-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 899999999999999988899988877653 3333443333
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=1.3 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014978 160 IKMELPEKAATTLKEME 176 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~ 176 (415)
...|++.+|..+|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34444444444444443
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=1.3 Score=42.52 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...-+..+.+...++-|+.+-+.-......-.........-+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4556667777777777776655432111111123444455667889999998888766543 2333 345666777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
.+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 7778888888888888754 55566788899999999888777766543 2221 112445666777777777777665
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
..... +...... .+-..+++++|.+++..+.
T Consensus 487 ~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 54322 2223333 3345778888888877653
No 277
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.68 E-value=1.3 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=12.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+...|++.+|.++|+++.+.++.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCC
Confidence 44455555555555555554444
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.33 E-value=0.055 Score=28.79 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=15.2
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 106 LKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
..+..|.+..+|+.+...+...|++++|+
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33334555555555555555555555543
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=2.5 Score=40.63 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
....-+..+.+...++-|..+-+. .+..++. .......+.+.+.|++++|...|-+.... +.|+ .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 355667777788888888777653 3333332 13344556677889999999988776654 3333 34566
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 273 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 273 (415)
|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66777777888888999888876 66677789999999999998888776543 1111 11234566777777778888
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 274 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 274 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
..+-..... +......+ +-..+++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776555432 23333333 34468888888887653
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.31 E-value=5.7 Score=38.76 Aligned_cols=297 Identities=12% Similarity=0.005 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHH----HhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSY----VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (415)
.+....-.+...|.+++|++..-.+.+ +..-..++..+ ...++........+.+...-+..++..--.-+..
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d----~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHALAAGD----PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCCC----HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 334444466777777777766554433 33333333332 2334444333333332211111112222222234
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC-CHh-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP-DVV-------TYNLWL-AACASQNDKETAEKAFLELKKT----KIDPDWISYSTLT 156 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l~ 156 (415)
.....++.+|..++.++....++ +.. .|+.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45578899999999988765222 221 244332 2345578889999888877654 1234555677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHH--HHHHcCCCh--HHHHHHHHHHHHcc--ccc----ChhhHH
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLL--SLYTNMGYK--DEVLRIWKKMMSLF--AKM----NDAEYT 223 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~--~~a~~~~~~~~~~~--~~~----~~~~~~ 223 (415)
.+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+. .+....+....... -.| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999998877765422233333 33332 334555633 22333333332221 111 112344
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhccCCCCCchH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCC----CHhHHHHHH
Q 014978 224 CVISSLVK-LGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP----CYTTWELLT 296 (415)
Q Consensus 224 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~ 296 (415)
.+..++.+ .+...++..-+..-......|-.... ..|+......|++++|...++++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44444444 12222222222222222222222222 367788888999999999998887543333 222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 014978 297 WG--YLKKGQMEKVLECFKK 314 (415)
Q Consensus 297 ~~--~~~~~~~~~a~~~~~~ 314 (415)
.. ....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356787777776665
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.21 E-value=1.8 Score=32.73 Aligned_cols=42 Identities=21% Similarity=0.057 Sum_probs=18.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 377 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a 377 (415)
+...|++.+|.++|+.+....+..+..-..+..++...|+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 444555555555555554444333333333333333344443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.18 E-value=1.1 Score=34.97 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHH------
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-NRV------ 185 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------ 185 (415)
..+..+...|.+.|+.+.|.+.|.++.+....+.. ..+-.++....-.+++..+...+.+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777888888888888888888888776443332 355667777788888888888777765431111 111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.|..+ .+...+++..|-+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2334578888777776654
No 283
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.06 E-value=2.5 Score=33.72 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=95.4
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-R 181 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 181 (415)
|.+.....|.-..+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-+. +.-.|++.-|.+=+...-+.+. .
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCC
Confidence 3333333466677888888888899999999999998888743323223333333 3346888888777666655431 1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHH-HHHHcccccChhhHHHHH-HHHHhcCChHHHHHHHHHHHhccCC------CC
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWK-KMMSLFAKMNDAEYTCVI-SSLVKLGEFEKAENIYDEWESISGT------GD 253 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 253 (415)
|=...|--+. -+.-++.+|..-+. +... .|..-|...| ..|...=..+ .+++.+....-. .-
T Consensus 167 PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~L 236 (297)
T COG4785 167 PFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHL 236 (297)
T ss_pred hHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHH
Confidence 2222333222 23345666654433 3322 2323333222 2222111112 233333222110 12
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 285 (415)
+.+|..+...+...|+.++|..+|+-.+..++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788889999999999999999998887643
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=11 Score=41.16 Aligned_cols=149 Identities=8% Similarity=-0.056 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcC----CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 18 QRVAQAQALQTRARENFFENLPDK----MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
.+.+..+.+.+.+|.-.++.-... .....-|..+...|...++++...-+...-.. +.. ....+-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhh
Confidence 344567889999999999984221 11223344555589999999998887774111 222 33445566778
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-LTSLYIKMELPEKAATTL 172 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~ 172 (415)
|++..|...|+.+.+..|+....++.++......+.++...-..+-.... ..+....++. =+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999999887888888998888888888888887766655543 2333333333 234446677777776665
Q ss_pred H
Q 014978 173 K 173 (415)
Q Consensus 173 ~ 173 (415)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 5
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.00 E-value=7.7 Score=39.21 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHh
Q 014978 48 CSALLHSYVQNK--KSAEAEALMEKMSE 73 (415)
Q Consensus 48 ~~~li~~~~~~~--~~~~a~~~~~~~~~ 73 (415)
.-.+|.+|++.+ .++.++....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345667777766 56666665555553
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.91 E-value=0.026 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=17.5
Q ss_pred CcCCC-CcchHHHHHHHHHhcCcHHHHH
Q 014978 39 PDKMR-GPDTCSALLHSYVQNKKSAEAE 65 (415)
Q Consensus 39 ~~~~~-~~~~~~~li~~~~~~~~~~~a~ 65 (415)
.+..| ++.+|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33334 5667777777777777777664
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1.5 Score=37.00 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
...+...++..-....+++.+...+-++.... ..++...+ ..++. +-.-++++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 33345555544455666777777666654321 11222222 12232 233456677777777777788888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHh
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+|+.+.+.+++.+|..+...|+.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777777665
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.88 E-value=6 Score=37.54 Aligned_cols=280 Identities=13% Similarity=-0.032 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHH-----HHhcCCcCcHHHHHHHHhh----c-CCCCHhHHHHHHHHHHhcC--
Q 014978 61 SAEAEALMEKMSECGFLKCPLPYNHMLNL-----YISNGQLDKVPQMLQELKK----N-TSPDVVTYNLWLAACASQN-- 128 (415)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~-- 128 (415)
...+.+.++.....|. ......+..+ +....+.+.|+.+|+...+ . ...+......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 5678888888888762 2222223322 3345678899999988755 1 2224456777777777743
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--cCCChHH
Q 014978 129 ---DKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT--NMGYKDE 202 (415)
Q Consensus 129 ---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 202 (415)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|....+.|.. ....+..++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677999999998887 4555433332222222 24678999999999988742 2222222222222 3357789
Q ss_pred HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH-HHH---Hh----cCcHHHHH
Q 014978 203 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAY---IN----RNQLEMAE 274 (415)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~g~~~~a~ 274 (415)
|..++++..+.|. |....-...+..+.. +.++.+.-.+..+...+.+ ...+-...+ ... .. ..+.+.+.
T Consensus 383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999988873 332222223333444 7777777777666665533 222211111 111 11 12455666
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH----HcCChhHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKK----GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE----EQGDIDGAE 346 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~ 346 (415)
..+.+....| +......+...|... .+++.|...+..+.. .+ ......+...+- ... +..|.
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~--~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE--QG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH--hh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 6666666554 344444454444332 357777777777665 22 222222222221 123 56777
Q ss_pred HHHHHHHHcCCC
Q 014978 347 HLLVTLRNAGHV 358 (415)
Q Consensus 347 ~~~~~~~~~~~~ 358 (415)
+++......+..
T Consensus 530 ~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 530 RYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHhcCch
Confidence 777777665443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.84 E-value=0.13 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.78 E-value=0.16 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMS 72 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~ 72 (415)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.74 E-value=3.6 Score=34.45 Aligned_cols=60 Identities=8% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...|+--.+..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4556678888999999999998888764 56778888899999999998888777776643
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.59 E-value=5.5 Score=36.17 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
-..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 345666777899999999999999875422 23446678999999999999999999987653
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.39 E-value=5.3 Score=35.31 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
...+|..++..+.+.|.++.|...+..+...+... .......-+......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777777777777777666543211 222333344555566677777776666655
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.37 E-value=1.1 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=18.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..+.|++....+.+++|.+.+++..|.++|+-++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.27 E-value=5.5 Score=35.18 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
...+..+.|+++...++....... .++...+..+... +.++++++...++.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~-~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED-SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC-ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 345667778888754444444322 2344445554444 778888888777776543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.02 E-value=0.31 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 292 WELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 292 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|..+...|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.98 E-value=1.6 Score=34.46 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC-CCCHHHHHHHHHHHHHcCCh
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-VPDHRLITAAYNKLEEQGDI 342 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 342 (415)
+.+.|+ +.|.+.|-.+...+.--++.....+. .|.-..+.++++.++.++++....- .+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444455 56777777777665443444444444 4444678888888888888754444 67888888888888888888
Q ss_pred hHHH
Q 014978 343 DGAE 346 (415)
Q Consensus 343 ~~a~ 346 (415)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.93 E-value=2.1 Score=29.40 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
..+-++.+.. ..+.|++....+.+.+|.+.+++..|.++|+-++..-......|..+++
T Consensus 29 ~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3444444444 4556666666666666666666666666666665432222224444443
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.91 E-value=0.42 Score=25.00 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 356 (415)
+..+...+...|++++|++.|++..+..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3444444555555555555555554443
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=3.4 Score=31.71 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=55.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHH--HHHHHHcCCCh
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDW-ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSS--LLSLYTNMGYK 200 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~ 200 (415)
++.+..++|+.-|..+.+.|...=+ .....+.......|+...|...|+++-.....|-.. -... -.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3455566666666666655532111 111223334455566666666666655432222221 0000 11223455555
Q ss_pred HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
++...-.+-+-..+.+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444443332222222233444445556666666666665544
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.77 E-value=0.12 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG 44 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 44 (415)
.+..+..+.+.|++++|.+.|+.+....|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 355666666777777777777776665554
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.68 E-value=0.46 Score=24.97 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.+|..+..++...|++++|...|++..+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56788899999999999999999999987664
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.39 E-value=8.6 Score=35.12 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
|.....+++..+.++-.+.-+..+..+|..-| -+...|..++.+|... ..+.-..+++++.+.... |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666666777776644 2555666677766666 455566666666665433 4444445555
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPC------YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
.|-+ ++.+.+..+|.++...-+ |. ...|..+...- ..+.+....+....... .+...-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 5544 666666666666654321 10 12344333211 34555556655555543 34444445556666677
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
....++.+|++++..+.+.+..+..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 78888888888888888877776666566655544
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.25 E-value=1.8 Score=29.36 Aligned_cols=49 Identities=8% Similarity=-0.071 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345566666666666777777777777777777777777777776554
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.24 E-value=6.8 Score=33.62 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCCh-
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIK--ME----LPEKAATTLKEMEKRTC---RKNRVAYSSLLSLYTNMGYK- 200 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 200 (415)
++...+++.|.+.|..-+..+|-+....... .. ...+|.++|+.|++... .++-..+..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666555555442222222 11 23456666666665421 1222333333322 22222
Q ss_pred ---HHHHHHHHHHHHcccccChh--hHHHHHHHHHhcCC--hHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 201 ---DEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGE--FEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 201 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
+.+..+|+.+.+.|...+.. ....++..+....+ ...+..+++.+.+.++++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555544433222 12222211111111 23455555555555555555444433
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.12 E-value=10 Score=35.32 Aligned_cols=316 Identities=10% Similarity=0.021 Sum_probs=187.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHH-hcCcHHHHHHHHHHHHhc-CCC-CCcccHHHHHHHHHh
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYV-QNKKSAEAEALMEKMSEC-GFL-KCPLPYNHMLNLYIS 92 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 92 (415)
+.+.--.+-|..+.+.++|++....-| +...|......+. ..|+.+.....|+..... |.. .+...|...+..-..
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 333344788999999999999887655 6677776665544 578999999999988764 211 245578888888888
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHh-H---HH------------------HHHHHHHh------------------------
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVV-T---YN------------------LWLAACAS------------------------ 126 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~---~~------------------~l~~~~~~------------------------ 126 (415)
++++.....+|+++.+....... . |. .+...-..
T Consensus 164 qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~ 243 (577)
T KOG1258|consen 164 QKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDP 243 (577)
T ss_pred cccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCc
Confidence 89999999999998753110000 0 00 00000000
Q ss_pred cCCHHHHHHHHHHH------------------------HhC---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 127 QNDKETAEKAFLEL------------------------KKT---KI----DPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 127 ~~~~~~a~~~~~~~------------------------~~~---g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
.+..+++.....+. ++. -+ +++..+|..-+..-.+.|+.+.+.-+|+..
T Consensus 244 s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~erc 323 (577)
T KOG1258|consen 244 SKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERC 323 (577)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 00011111111100 000 00 123345666666667778888888888776
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP- 254 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 254 (415)
.-- +..=...|-..+......|+.+-|..++....+-..+-...+-..-.......|+++.|..+++.+...- |+.
T Consensus 324 li~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v 400 (577)
T KOG1258|consen 324 LIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLV 400 (577)
T ss_pred HhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchh
Confidence 531 1111234555555555668888888888777665443222222222233456789999999999998764 332
Q ss_pred chHHHHHHHHHhcCcHHHHH---HHHHHHHhCCCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 255 RVPNILLAAYINRNQLEMAE---SFYNRLVTKGIKPCYTTWELLTWG-----YLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
..-..-+....+.|+.+.+. .++........ +......+.-- +.-.++.+.|..++.++.+ ..+++.
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~---~~~~~k 475 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAND---ILPDCK 475 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh---cCCccH
Confidence 23333355566788888877 44443333211 22333333322 3346889999999999987 567777
Q ss_pred HHHHHHHHHHHHcC
Q 014978 327 RLITAAYNKLEEQG 340 (415)
Q Consensus 327 ~~~~~l~~~~~~~g 340 (415)
..|..++..+...+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 476 VLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887766554
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.91 E-value=4.6 Score=31.01 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 67 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
.++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444455555555566666666666555443
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.72 E-value=7.2 Score=32.78 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVL 399 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l 399 (415)
++......|..+|.+.+|.++.++....++.+...|-.|++.+...|+- +..-+++|. ..|+..|......+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 4556667899999999999999999999999999999999999999985 444444432 36777777665543
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.59 E-value=1.5 Score=34.44 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=41.7
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 128 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (415)
-+.++|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-..+..+..|....+...-+.+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3344555555555555544431 1111 122223334455555555555555444444444444444445555555
Q ss_pred CHHHHHHHHHHHHhC
Q 014978 129 DKETAEKAFLELKKT 143 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~ 143 (415)
.+++|+.=|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 555555555555544
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.55 E-value=1.5 Score=30.04 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5566666666667777777777777777777888777777777665
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.53 E-value=0.6 Score=24.39 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|..+...+...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666667777777777776665
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=2.6 Score=35.65 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=76.2
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 73 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
..|.+.+..+-..++..-....+++.+..++-++++. ..++.. -.+.++.+. .-++++++.++..=++-|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3455566667777777767778889999988888764 222222 222333332 3467788888888888999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.03 E-value=3.6 Score=37.04 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCh
Q 014978 122 AACASQNDKETAEK-AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 122 ~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (415)
.-....|++-.|-+ ++..+......|+.. ......+...|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33345666665554 444444433334433 33344567778999988888776543 334556677888888888999
Q ss_pred HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
+.|..+-.-|....+. +...........-..|-++++.-.|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999988888877665 44444433444455677888888888776544
No 314
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.81 E-value=13 Score=33.91 Aligned_cols=305 Identities=12% Similarity=0.018 Sum_probs=143.4
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH--HHHHHHHhhc--CCC----------CHhHHHHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV--PQMLQELKKN--TSP----------DVVTYNLWLA 122 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~--~~~----------~~~~~~~l~~ 122 (415)
..+.++...+.++.+...|.......+|.-...|.+.|..... ++-++.+... .+. ....+....-
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 4677888888888888877666666677777777777765432 2222222211 111 1122222333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH---HHhcC-CCCC--HHHHHHHH
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPD-----WISYSTLTSLYIKMELPEKAATTLKE---MEKRT-CRKN--RVAYSSLL 191 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~-~~~~--~~~~~~l~ 191 (415)
++.....+..|+++...+...- .|= ..........+....+.++|+.+++- +...+ ..++ ..+-+.+
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~- 186 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL- 186 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh-
Confidence 3444455555555554443321 110 01112233344555556666655443 33221 0111 1111111
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH-HHHHHhcCcH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL-LAAYINRNQL 270 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~ 270 (415)
.+.+-+..|..-+-.. .|......--++++....+...+..-.+.+... ..|...+..| .+.+.-.|++
T Consensus 187 ---~kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~ 256 (696)
T KOG2471|consen 187 ---LKTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGNH 256 (696)
T ss_pred ---cccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcch
Confidence 1222222222111110 000011111123333333333333333322211 1122222222 2334456788
Q ss_pred HHHHHHHHHHH---hCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhc-----ccCCCCCH----------H
Q 014978 271 EMAESFYNRLV---TKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKKAIGS-----VRKWVPDH----------R 327 (415)
Q Consensus 271 ~~a~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~p~~----------~ 327 (415)
.+|.+++...- ..|...+ -..||.|...+.+.|.+..+..+|.++++. ..|++|.. .
T Consensus 257 ~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 257 PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME 336 (696)
T ss_pred HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh
Confidence 88877765532 1221111 122455555556667777777777766641 13444322 1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
......-.|...|++-.|.+.|.+....-..++..|-.|..+|.-.
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1222344577889999999999888887777888899888888643
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=4.1 Score=37.82 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 22 QAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
..-.|+++.|..++..+++ ..-+.++..+.++|-.++|+++- +|+. .-.....+.|+++.|.+
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-----~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-----EIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFD 658 (794)
T ss_pred HhhhccccccccccccCch-----hhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHH
Confidence 3445566666555444432 23345555566666666555432 2221 12233455666666666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
+..+.. +..-|..|.++....+++..|.+.|.+.... ..|+-.+...|+.+....+-....+.| .
T Consensus 659 la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 659 LAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 655542 5556777777777777777777777665433 345555666666655555555555444 2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
.| ...-+|...|+++++.+++..
T Consensus 724 ~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 22 222344555777776666544
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.26 E-value=17 Score=34.58 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=157.4
Q ss_pred hhHHHHHHHHhcCcCCCCcchHHHHH----HH-HHhcCcHHHHHHHHHHHHh-------cCCCCCcccHHHHHHHHHhcC
Q 014978 27 QTRARENFFENLPDKMRGPDTCSALL----HS-YVQNKKSAEAEALMEKMSE-------CGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~li----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+...|.++++.+.+.+ +...-..+. .+ +....|++.|...|....+ .| .+.....+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567888888877753 222222222 22 4467899999999999877 55 3446677888888754
Q ss_pred -----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCC
Q 014978 95 -----QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI----KMEL 164 (415)
Q Consensus 95 -----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~ 164 (415)
+.+.|..++........|+....-..+..... ..+...|.++|......|.. ..+-.+..+|. -..+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 44558999988877666666665555444444 35788999999999999842 22323333332 2357
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH-HH---Hh----cCChH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-SL---VK----LGEFE 236 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~g~~~ 236 (415)
.+.|..++.+..+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+. .. .. ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchh
Confidence 899999999999987 3333322333444555 7888888888777776654 2222221111 11 01 11344
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH----hcCCHHHH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL----KKGQMEKV 308 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a 308 (415)
.+...+......| +......+-..|..- .+++.|...+......+ ....-.+...+- ... +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHH
Confidence 4555555544433 333444444443322 24666666666665543 222222222221 122 5667
Q ss_pred HHHHHHhHh
Q 014978 309 LECFKKAIG 317 (415)
Q Consensus 309 ~~~~~~~~~ 317 (415)
.++++.+.+
T Consensus 529 ~~~~~~~~~ 537 (552)
T KOG1550|consen 529 KRYYDQASE 537 (552)
T ss_pred HHHHHHHHh
Confidence 777776655
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.21 E-value=2.5 Score=36.17 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 226 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
.+-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..=.+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 355666777777777776655432 2266666666667777666666555444444
No 318
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.16 E-value=7.9 Score=31.95 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHhcccC-CCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHc
Q 014978 305 MEKVLECFKKAIGSVRK-WVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~-~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.+.|.+.|+.+...... ++|...+...|+- .|-..|+.++|.++.+...+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35566666666553322 6666665544433 345679999998887776553
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.16 E-value=3.9 Score=32.32 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccChhhHHHHHHHHHhcCChHHH
Q 014978 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
+.|.+.|-++...+.--++.....+...|. ..+.++++.++-...+. +..+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333333 34444444444444432 1133444444444444444444443
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.12 E-value=8 Score=30.56 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=56.1
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHHHHHHH
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLE 337 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 337 (415)
+...|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..++++ +.|+. ..+..-..+|.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEAYE 179 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHHHH
Confidence 455677777777776666542 121 12333444566677777777777777766 33322 33333345677
Q ss_pred HcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 338 EQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
+...+++|+.-|+.+.+..|....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHH
Confidence 7777778887777777776664333
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.93 E-value=1.4 Score=37.66 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
.|..|.++|.+++|+..|.......| +++.+..-..+|.+..+|..|..-.+....
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556677777777777776666655 666666666777777777766655555444
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.68 E-value=0.85 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=15.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 331 AAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
.+..++.+.|++++|.+.|+++.+.-|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344455556666666666666655444
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.65 E-value=7 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014978 126 SQNDKETAEKAFLELKK 142 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~ 142 (415)
..|+|++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44444444444444443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.50 E-value=1.1 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555554443
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.44 E-value=8.2 Score=29.70 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.++++.+.+.+++|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34555566667777777777777777777765543333 33334444433332222221 2233333333333332
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
-- ..+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 12444556666777777777766654221 22223445555555555554444444443
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.30 E-value=1 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988764
No 327
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.75 E-value=23 Score=33.92 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
......++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+....-.+...+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455555555555555555554433211 12234444444555555554444444333
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.35 E-value=5.6 Score=31.85 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYTTWELLTWG 298 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 298 (415)
|....++.+.+.+...+++....+-.+.+ +.+..+-..+++.+|-.|++++|..-++..-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999999988877765 4477788889999999999999988777665432 22344566666654
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.25 E-value=1.3 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444445555555555544443
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.91 E-value=22 Score=32.70 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=115.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
|-...-+++..+..+...+-...+..+|...| .+...|..++.+|..+ ..++-..+++++.+..-.|+..-..|+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55566778888888888888999999998876 5677888889999888 66778888888877655566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcC
Q 014978 124 CASQNDKETAEKAFLELKKTKIDP--D---WISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 197 (415)
|-+ ++.+.+..+|.++..+=++. + ...|..+...- ..+.+..+.+...+... |...-.+.+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 655 88888888888877553221 1 12344433321 35666677776666543 3333445566666778888
Q ss_pred CChHHHHHHHHHHHHcc
Q 014978 198 GYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~ 214 (415)
.++.+|++++..+.+..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 88999999888776654
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.88 E-value=1.9 Score=27.97 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 68 (415)
.....|+.+...++.++|+..+..+.+..+++ .+...++.+|+..|++.++++.-
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888877764432 35566777888888887776643
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.84 E-value=0.24 Score=37.22 Aligned_cols=50 Identities=26% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444433323334444444444444444444444433
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.82 E-value=11 Score=35.09 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555544443321 3344555555555555555555554443
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.78 E-value=1.2 Score=23.19 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666777777777766655
No 335
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.60 E-value=9.2 Score=35.55 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=50.3
Q ss_pred hcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
-.|+...|...+....-. ....-.....|.....+.|....|..++.+..... ...+.++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666554332 11122334455566666666666666666665554 3344556666677777777777777
Q ss_pred HHHHHHhc
Q 014978 171 TLKEMEKR 178 (415)
Q Consensus 171 ~~~~~~~~ 178 (415)
.|.+..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 77766655
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.11 E-value=4.9 Score=32.17 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAA 123 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~ 123 (415)
+..+..+.+.+..++++...++-.+.. +.|...-..++..++-.|++++|..-++-.... ..+-...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344555666667777776666655543 334555566667777777777776555544332 34444556655554
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.82 E-value=24 Score=32.08 Aligned_cols=88 Identities=11% Similarity=-0.123 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHHHHHhcCcC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 20 VAQAQALQTRARENFFENLPDK-MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
..+...|+++.+...+..+... .....+-..+++...+.|+++.|..+-+-|....+. ++.......-..-..|-+++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 3445566666666666555443 234445566666666667777776666666654432 22222222212223344556
Q ss_pred HHHHHHHHhh
Q 014978 99 VPQMLQELKK 108 (415)
Q Consensus 99 a~~~~~~~~~ 108 (415)
+.-.|+++..
T Consensus 410 ~~~~wk~~~~ 419 (831)
T PRK15180 410 SYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhc
Confidence 6666655543
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=16 Score=29.78 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHc--ccccChh---hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 198 GYKDEVLRIWKKMMSL--FAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
.++++|+..|+..-+- |-..+.. .+.-+...-...+++.+|+++|+++.......+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4455555555554432 1111111 233333444567788888888888776654433
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.43 E-value=4.5 Score=31.32 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
+++|...|++..+. .|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44555566655554 667777766665542 3455555555443
No 340
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.43 E-value=19 Score=30.45 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-ccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
++..+...++..++..+++.+-.++++..... ++.-|...|..+|......|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444455555555555555555444333 23334444555555555555544444333
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.30 E-value=1.6 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
...+.++|+..|..+++.... .|+ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777663111 111 13556666677777777666654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.15 E-value=1.3 Score=21.65 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=8.6
Q ss_pred HHHHHHHhcCcHHHHHHHH
Q 014978 50 ALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~ 68 (415)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444443
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.86 E-value=9.2 Score=29.69 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 132 TAEKAFLELKKTKIDPDW-ISYSTLTSLYIKME----L-------PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+|..-|++.+.. .|+- .++..+..+|...+ + +++|...|++.... .|+...|+.-+....
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 334444444443 3443 45555666555432 1 34444445544443 566666666665542
Q ss_pred hHHHHHHHHHHHHc
Q 014978 200 KDEVLRIWKKMMSL 213 (415)
Q Consensus 200 ~~~a~~~~~~~~~~ 213 (415)
+|-++..++.+.
T Consensus 125 --kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 --KAPELHMEIHKQ 136 (186)
T ss_dssp --THHHHHHHHHHS
T ss_pred --hhHHHHHHHHHH
Confidence 344455554444
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.82 E-value=0.59 Score=35.06 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3455555666666666666666554444566666667777776665666665551 111223344555555555
Q ss_pred hHHHHHHHHH
Q 014978 235 FEKAENIYDE 244 (415)
Q Consensus 235 ~~~a~~~~~~ 244 (415)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.66 E-value=14 Score=31.01 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh-
Q 014978 155 LTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK- 231 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 231 (415)
=|.++...+++.+++...-+.-+. .++| .....-|-.|.+.+++..+.++-..-.+..-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356666666666666554443321 1222 23334445566666666666666555543222222335555544432
Q ss_pred ----cCChHHHHHHH
Q 014978 232 ----LGEFEKAENIY 242 (415)
Q Consensus 232 ----~g~~~~a~~~~ 242 (415)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666655
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.34 E-value=7.2 Score=36.19 Aligned_cols=104 Identities=13% Similarity=-0.043 Sum_probs=79.5
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
.|+...|.+.+.........-..+....|.....+.|-..+|-.++.+.+.. ....+-++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~---~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI---NSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh---cccCchHHHhcchhHHHHhhhHHHH
Confidence 5888888888877765432223345566677777778888899999888772 2445567788889999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 347 HLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
+.|+++.+..+.+..+-+.|...-|++
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 999999999998888888777766644
No 347
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.33 E-value=9.4 Score=26.61 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
...++|..+.+.+...+- -...+--.-+..+.+.|++++| +..-.....||...|-+|.. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555555431 1111111122334455555555 22222223445555444433 24555555555555
Q ss_pred HHHhCC
Q 014978 139 ELKKTK 144 (415)
Q Consensus 139 ~~~~~g 144 (415)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.14 E-value=38 Score=32.80 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=105.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCC--cccHHHHHHHHH-hcCCcCcHHHHHHHHhhc-CCCCHh---
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKC--PLPYNHMLNLYI-SNGQLDKVPQMLQELKKN-TSPDVV--- 115 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~~~~--- 115 (415)
+...|..|| ..|++.++-+.+ ..++|. ..++-.+...+. ...+++.|...+.+.... ..++..
T Consensus 29 ~l~~Y~kLI---------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLI---------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHH---------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 445555554 467788877773 333332 233444555554 577888888888876443 222221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCHH
Q 014978 116 --TYNLWLAACASQNDKETAEKAFLELKKTKID----PDWISYSTL-TSLYIKMELPEKAATTLKEMEKRT---CRKNRV 185 (415)
Q Consensus 116 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 185 (415)
.-..++..+.+.+... |...+++.++.--. +=...+..+ +..+...+++..|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234556666666555 88888776654211 111222333 223333478888888887776432 123333
Q ss_pred HHHHHHHHH--HcCCChHHHHHHHHHHHHcccc---------cChhhHHHHHHHH--HhcCChHHHHHHHHHHHh
Q 014978 186 AYSSLLSLY--TNMGYKDEVLRIWKKMMSLFAK---------MNDAEYTCVISSL--VKLGEFEKAENIYDEWES 247 (415)
Q Consensus 186 ~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 247 (415)
++..++.+. ...+.++++.+.++.+...... |...+|..++..+ ...|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444443 3445567777777777543221 2334566665554 456777777777666543
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.79 E-value=72 Score=35.65 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=97.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFL--KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
.+..+-.+.+.+.+|...++.-.....+ .....|-.+...|..-++++....+...-. ..|+ ...-+......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~--a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF--ADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh--cCcc---HHHHHHHHHhh
Confidence 4556677889999999998884211100 112234444558999999999888877421 1222 23345556788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL-LSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~ 206 (415)
|++..|...|+.+.+.+ ++...+++-++......|.++......+-.... ..+....++++ +.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999999875 444667888888777788888887766665544 23333344433 2444566666666555
Q ss_pred HH
Q 014978 207 WK 208 (415)
Q Consensus 207 ~~ 208 (415)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.64 E-value=40 Score=32.64 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=114.1
Q ss_pred hHHHHHHHHhcCcC-CC----CcchHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCc
Q 014978 28 TRARENFFENLPDK-MR----GPDTCSALLHSYV-QNKKSAEAEALMEKMSECGFLKCPL-----PYNHMLNLYISNGQL 96 (415)
Q Consensus 28 ~~~A~~~~~~~~~~-~~----~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 96 (415)
+..|++.++.+.+. .+ ...++-.+...+. ...+++.|+..+++....--.++.. +...++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44567777777643 22 3456667777776 6899999999999876543222221 123455667776665
Q ss_pred CcHHHHHHHHhhc-CC----CCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 014978 97 DKVPQMLQELKKN-TS----PDVVTYNLW-LAACASQNDKETAEKAFLELKKTK---IDPDWISYSTLTSLYI--KMELP 165 (415)
Q Consensus 97 ~~a~~~~~~~~~~-~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~--~~~~~ 165 (415)
. |...+++..+. .. +-...|..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 99999987665 12 222233333 333334489999999998886542 2344444555555443 45667
Q ss_pred HHHHHHHHHHHhcCC---------CCCHHHHHHHHHHH--HcCCChHHHHHHHHHHHH
Q 014978 166 EKAATTLKEMEKRTC---------RKNRVAYSSLLSLY--TNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 212 (415)
+++.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888854322 23556677776655 456777788777776654
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=84.41 E-value=15 Score=30.13 Aligned_cols=104 Identities=10% Similarity=0.080 Sum_probs=50.1
Q ss_pred hHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 47 TCSALLHSYV--QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 47 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
.|..+++++. ..+++++|.+.+-. -.+.| .....++.++...|+.+.|+.+++..... ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-
Confidence 4455555543 44566666655521 11111 11224566666667777777777665421 1122222333333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
...+.+.+|..+-+...+.. ....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 45567777766666554421 1234444555444
No 352
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.89 E-value=12 Score=27.05 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
-+..... ..+.|++.....-+.+|.+.+|+..|.++|+-++..
T Consensus 71 glN~l~~--yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFD--YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhc--cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444 456666666666666676667777777666666543
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.58 E-value=3.1 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 120 WLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 354
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.57 E-value=30 Score=30.27 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=80.0
Q ss_pred CCCCHhHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 110 TSPDVVTYNLWLAACASQN------------DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|.|+.+|-.++..--..- -.+.-+.+++++++.+ +.+......++..+.+..+.++..+.++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666666654322221 1344566777777663 45555667777777777777887888888877
Q ss_pred cCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHc------cc------ccC--hh---hHHHHHHHHHhcCChHH
Q 014978 178 RTCRKNRVAYSSLLSLYTN---MGYKDEVLRIWKKMMSL------FA------KMN--DA---EYTCVISSLVKLGEFEK 237 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~------~~~--~~---~~~~l~~~~~~~g~~~~ 237 (415)
.. +-+...|...+..... .-.++....+|.+..+. +. .++ .. .+..+...+...|..+.
T Consensus 94 ~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 KN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 62 3356667666655443 23455666666554432 10 000 01 12233333456788888
Q ss_pred HHHHHHHHHhccC
Q 014978 238 AENIYDEWESISG 250 (415)
Q Consensus 238 a~~~~~~~~~~~~ 250 (415)
|..+++.+.+.++
T Consensus 173 Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 173 AVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHc
Confidence 8888887777654
No 355
>PRK09687 putative lyase; Provisional
Probab=83.23 E-value=28 Score=29.71 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=101.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP----EKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 186 (415)
.+|.......+..+...|.. .+...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 34444444455555544432 22222333332 23444444555555555542 3455555554332 344444
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH
Q 014978 187 YSSLLSLYTNMGYK-----DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261 (415)
Q Consensus 187 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (415)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++ ..+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 44444444443221 12222222222 12244444455555555555 334444444443 22333444444
Q ss_pred HHHHhcC-cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 262 AAYINRN-QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 262 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .++..+-..++. ++ .....+.++...|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-----~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-----GT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-----Cc--hHHHHHHHHHhcC
Confidence 4444432 13345555555443 23555556666666666663 455555444441 22 2234556666666
Q ss_pred ChhHHHHHHHHHHHcCC
Q 014978 341 DIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~ 357 (415)
.. +|...+..+.+..+
T Consensus 250 ~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CH-hHHHHHHHHHhhCC
Confidence 64 56666666665444
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.21 E-value=3.5 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
|+.+.+..+|+++....+.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888777777777776653
No 357
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.19 E-value=37 Score=31.16 Aligned_cols=240 Identities=10% Similarity=0.099 Sum_probs=125.2
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcC------CHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQN------DKETAEKAFLELKKTK-I-DPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+|+...+. -++...|+..|..|...- .+.....+++...+.+ . +.....|..+.-.++......++.
T Consensus 303 ~v~ee~v~~-l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a--- 378 (568)
T KOG2396|consen 303 AVYEEAVKT-LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA--- 378 (568)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH---
Confidence 555554432 334445555555554322 3444455555554433 2 223445666666665554433322
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcC-CChHHH-HHHHHHHHHcccccChhhHHHHHHHHHhcCC-hHH--HHHHHHHHHh
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNM-GYKDEV-LRIWKKMMSLFAKMNDAEYTCVISSLVKLGE-FEK--AENIYDEWES 247 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~--a~~~~~~~~~ 247 (415)
..+...++..|...|..-++..... .+++-- .+.+......-..+....|+... .|+ .+. -..++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 2222222344666666555555422 222221 22222222221122222333332 222 111 1122233333
Q ss_pred ccCCCCCchH-HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHhHhcccCCCC
Q 014978 248 ISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL--KKGQMEKVLECFKKAIGSVRKWVP 324 (415)
Q Consensus 248 ~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~p 324 (415)
.+ .++..++ +.++..+.+.|-..+|..++..+... ++|+...|..+|+.-. ...+...+..+++.|... +..
T Consensus 454 ~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~---fg~ 528 (568)
T KOG2396|consen 454 VI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE---FGA 528 (568)
T ss_pred hc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH---hCC
Confidence 33 3444443 56777778888888888888888875 3457777777775422 223477778888888874 336
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
|+..|...+.-=...|..+.+-.++.++.+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777777666678888888887777665
No 358
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.04 E-value=38 Score=31.12 Aligned_cols=90 Identities=6% Similarity=0.017 Sum_probs=58.7
Q ss_pred HHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCCcCcHHHHHHHHh
Q 014978 30 ARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQMLQELK 107 (415)
Q Consensus 30 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 107 (415)
.-..+|+.+...-+ |+..|...+..+-+.+.+.+...+|.+|.... +.++..|........ ..-+++.|..+|..-.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34455555555534 88888888888888888888999999888753 345555654443333 3334778888887766
Q ss_pred hcCCCCHhHHHHH
Q 014978 108 KNTSPDVVTYNLW 120 (415)
Q Consensus 108 ~~~~~~~~~~~~l 120 (415)
+..|.+...|...
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 6555555554433
No 359
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=55 Score=32.87 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcccccC---hhhHHHHHHHHHhcCCh--HHHHHHHHHHHhccCCCCCchHHH-
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEF--EKAENIYDEWESISGTGDPRVPNI- 259 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~- 259 (415)
.|..|+..|...|..++|+++|.+.......-| ...+..++..+.+.+.. +..++.-+...+.........+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477888899999999999999988876321011 11234456655555554 555555555544332222222221
Q ss_pred -----------HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--------HHHHHHH-----HHHh
Q 014978 260 -----------LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--------MEKVLEC-----FKKA 315 (415)
Q Consensus 260 -----------l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 315 (415)
-+-.|+.....+.+..+++.+....-.++....+.++..|...=+ .+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 234466677788888899988866555677777777777654211 2223222 2222
Q ss_pred HhcccCCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHhc
Q 014978 316 IGSVRKWVPD--------HRLITAAYNKLEEQGDIDGAEHLLVTLRN--------------AGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 316 ~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~ 373 (415)
.+......|. ...|....-.+.+.|+.++|+.++-.... .+..+...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 2211222222 22333333345588899999988776554 1222557888899988877
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.68 E-value=3.2 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=8.0
Q ss_pred HHHHcCCChHHHHHHHHHHH
Q 014978 192 SLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~ 211 (415)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33334444444444444333
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.39 E-value=55 Score=32.49 Aligned_cols=227 Identities=16% Similarity=0.074 Sum_probs=124.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLT-SLYIKMELPEKAATTLKEMEKR----TCRKNRVAYSSLLS 192 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 192 (415)
....++++|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999988876542222211 233332 2234568899999888877654 12234556777778
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHH---HHH--HHHHhcCCh--HHHHHHHHHHHhccC---C---CCCchHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT---CVI--SSLVKLGEF--EKAENIYDEWESISG---T---GDPRVPNI 259 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~g~~--~~a~~~~~~~~~~~~---~---~~~~~~~~ 259 (415)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+. .+....+........ + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999999988776653333443332 222 234556632 333333333322211 1 11233444
Q ss_pred HHHHHHhc-CcHHHHHHHHHHHHhCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHhHhcccCC--CCCHHHHHHHHH
Q 014978 260 LLAAYINR-NQLEMAESFYNRLVTKGIKPCYTTWE--LLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYN 334 (415)
Q Consensus 260 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~~~~~~l~~ 334 (415)
+..++.+. +...++..-+.-.......|-...+. .|+......|++++|...+.++......- .++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 22233333333333333333222222 56777888999999999998887732222 233333333333
Q ss_pred H--HHHcCChhHHHHHHHH
Q 014978 335 K--LEEQGDIDGAEHLLVT 351 (415)
Q Consensus 335 ~--~~~~g~~~~a~~~~~~ 351 (415)
. -...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 3 3356787777766655
No 362
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.31 E-value=31 Score=31.39 Aligned_cols=210 Identities=9% Similarity=-0.011 Sum_probs=102.3
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcc--hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCC
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQ 95 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 95 (415)
....+.|+.+-+..+++.-.. |+.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 355678888888777764222 2221 1233445556678876 344445566555432 11233455667788
Q ss_pred cCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS--YSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+.+..+++.-... ...+.. -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 77665555432111 011111 123344455667654 4455555665554321 123445555677765544443
Q ss_pred HHHHhcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh---HHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 173 KEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 173 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ...++...+..|+.+-+.-+ .
T Consensus 156 ----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L----l 222 (413)
T PHA02875 156 ----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF----I 222 (413)
T ss_pred ----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH----H
Confidence 3443332 22223333 333446544 4455566666665432 22444445566776544444 4
Q ss_pred hccCCCC
Q 014978 247 SISGTGD 253 (415)
Q Consensus 247 ~~~~~~~ 253 (415)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 4555544
No 363
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.80 E-value=26 Score=29.46 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT----- 195 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 195 (415)
|.+++..++|.++....-+--+..-+..+.+...-|-.|.+.+.+..+.++-....+..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 677788888888776655443322122233445556668888888888887777665311222334666666554
Q ss_pred cCCChHHHHHHH
Q 014978 196 NMGYKDEVLRIW 207 (415)
Q Consensus 196 ~~~~~~~a~~~~ 207 (415)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 458888887776
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.66 E-value=9.9 Score=26.15 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.0
Q ss_pred HhcCCcCcHHHHHH
Q 014978 91 ISNGQLDKVPQMLQ 104 (415)
Q Consensus 91 ~~~~~~~~a~~~~~ 104 (415)
.+.|++++|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 50 MNRGDYQSALQLGN 63 (115)
T ss_pred HccchHHHHHHhcC
Confidence 33444444444433
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.49 E-value=47 Score=31.14 Aligned_cols=160 Identities=10% Similarity=-0.021 Sum_probs=96.0
Q ss_pred CCChHHHHHHHHHHHHcccccC------------hhhHHHHHHHHHhcCChHHHHHHHHHH-------HhccCCC-----
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMN------------DAEYTCVISSLVKLGEFEKAENIYDEW-------ESISGTG----- 252 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~----- 252 (415)
...++++...|....... .|+ ..+...+...+...|+.+.|..++.+. ....+.|
T Consensus 251 s~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345667777666655531 221 223445556677888877776666543 2222222
Q ss_pred --------CCchHHH---HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhHhcc-
Q 014978 253 --------DPRVPNI---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIGSV- 319 (415)
Q Consensus 253 --------~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~- 319 (415)
|...|-+ -+..+.+.|-+..|.++-+.+......-|+.....+|..|+ ++.+++-.+++++......
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1222222 24556678999999999998888655446777777888775 7788888888888774421
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCC
Q 014978 320 RKWVPDHRLITAAYNKLEEQGD---IDGAEHLLVTLRNAGH 357 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 357 (415)
...-||..--..|...|.+... -+.|...+.++....|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2234555444455555655544 4566666666665543
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.19 E-value=25 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 305 (415)
.+...|++++|...++.........+ ..+--.|.+.....|.+++|...++...+.+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 34455555555555554433210000 00111233444445555555555544443221 111122223344455555
Q ss_pred HHHHHHHHHhHh
Q 014978 306 EKVLECFKKAIG 317 (415)
Q Consensus 306 ~~a~~~~~~~~~ 317 (415)
++|..-|..++.
T Consensus 176 ~~Ar~ay~kAl~ 187 (207)
T COG2976 176 QEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 367
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.81 E-value=32 Score=28.74 Aligned_cols=50 Identities=6% Similarity=0.116 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWI---SYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
..++++|+.-|++..+..-..... ....++..+.+.+++++....+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345666666666665542122222 23345566666666666666666654
No 368
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.33 E-value=61 Score=31.67 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHhhhhHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 22 QAQALQTRARENFFENLPDKMR---GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
+.+.+.+++|+..-+......| -...+...|..+...|++++|-...-.|... +..-|..-+.-+...++...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 3677889999999888777655 3456788899999999999998888888653 44556666666665555443
Q ss_pred HHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHH------------------HHHHhCCCCCCHHHHHHHHHHH
Q 014978 99 VPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF------------------LELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 99 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
...+ +... ...+...|..++..+.. .+...-.++. .+..+. .. +...-..|+..|
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se-~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SE-STALLEVLAHLY 515 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-cc-chhHHHHHHHHH
Confidence 3222 1221 11233445555554444 1111111111 011111 11 112233477778
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014978 160 IKMELPEKAATTLKEME 176 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~ 176 (415)
...+++.+|++++-.+.
T Consensus 516 l~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHccChHHHHHHHHhcc
Confidence 88888888887776654
No 369
>PRK09687 putative lyase; Provisional
Probab=80.04 E-value=37 Score=28.99 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=22.8
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
++.......+.++...|..+ +...+..+... +|...-...+.++.+.|+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGM 83 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 45555555555665555432 33333333332 334444444555555554
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.70 E-value=37 Score=28.80 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHc-CC-ChHHHHHHHHHHHHc-ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCCCchH
Q 014978 182 KNRVAYSSLLSLYTN-MG-YKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGTGDPRVP 257 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 257 (415)
-|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++..-.++++..... ++..|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 345555555555544 11 222233333333322 23445556666666666777777666666665543 445566666
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
..+++.....|+..-..++.++
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhC
Confidence 6677766666666555555443
No 371
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.40 E-value=49 Score=33.96 Aligned_cols=178 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-----ccHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHM 86 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 86 (415)
+...|-.|+++...|...+|++.|.++....-.......++....-. .--...|-.|++ .-|..+
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~----------~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPK----------RFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCC----------CCchhcCCCCCchHHHHHHHHHH
Confidence 44556667778888899999998887765311111222222111100 000112222221 225556
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPD----VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI----SYSTLTSL 158 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~ 158 (415)
++.+-+.+-.+.+.++-....+..+++ ..+++.+..-....|.+-+|...+- + .||.. ...-++..
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHHHHHHHHH
Confidence 666777777777777766666553332 2245555555566666655544432 2 23332 33445555
Q ss_pred HHhcCCHH------------HHHH-HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 159 YIKMELPE------------KAAT-TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 159 ~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
++.+|.++ +... +++..-+.........|..|-..+...+++.+|-.
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 55655543 3333 22222222111122335555555566667665543
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.37 E-value=29 Score=27.44 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHH--
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE-- 293 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-- 293 (415)
.|..++.... .+.. +.......+...+ ...+|. .+...+...|++++|..-++..... |....+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 4555554443 3333 3344444444332 233343 3467788899999999999988764 3333333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 294 ---LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 294 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.|.......|.+++|+..++.... .++ .......-.+.+...|+-++|+.-|+.....+..
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKE--ESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccc--ccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 344567789999999999987654 121 2333445567899999999999999999988743
No 373
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.01 E-value=44 Score=29.25 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHh
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK---KGQMEKVLECFKKA 315 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 315 (415)
..+++++.+.+ +.+......++..+.+..+.+...+-|+++..... -+...|...+..... .-.++....+|.+.
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 34444444442 23444444555555555555555555555554421 134444444443322 12233444444333
Q ss_pred Hhccc----CC------CCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 316 IGSVR----KW------VPDH-----RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 316 ~~~~~----~~------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+.... +. .++. ..+..+...+..+|-.+.|..+++.+.+.++-
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 32110 10 0111 12333334456789999999999999887653
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.88 E-value=3.6 Score=24.50 Aligned_cols=31 Identities=6% Similarity=0.060 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGP 45 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 45 (415)
.+..++.+.+.|+++.|.+..+.+.+..|+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4555666666666666666666666655543
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.86 E-value=5.8 Score=19.40 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 292 WELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 292 ~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
|..+...+...++++.|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.52 E-value=24 Score=25.52 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+..+-++.+...++.|++.....-+.+|.+.+|+..|.++|+-...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666667778888888888888888888888888876655
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.39 E-value=17 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 322 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 322 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
..|+..++..++.++...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567777777777777777777777777777776555
No 378
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.06 E-value=61 Score=29.83 Aligned_cols=307 Identities=14% Similarity=0.065 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC--CcchHHHHHHHHHhcCcHHHHH--HHHHHHHhcCCCCC-----------c
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR--GPDTCSALLHSYVQNKKSAEAE--ALMEKMSECGFLKC-----------P 80 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~--~~~~~~~~~~~~~~-----------~ 80 (415)
...+...-..|.++.-.+++..+...+. .+..+|.-...|.+.|.+.... +-++.+...-..|+ .
T Consensus 21 ~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t 100 (696)
T KOG2471|consen 21 LCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGT 100 (696)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcch
Confidence 3344455667889999999988877643 3456788888888887765432 22222221111111 1
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHH---HHHhCC-CCCC--H
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY-----NLWLAACASQNDKETAEKAFL---ELKKTK-IDPD--W 149 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~---~~~~~g-~~~~--~ 149 (415)
..+-...-.|.....+..|+++...+..+..+-...+ ......++.....++|+.++. +|...+ ..++ .
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111122233344566777777766654422222211 112234455566666666544 443322 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH-HHHcccccChhhHHHH-HH
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK-MMSLFAKMNDAEYTCV-IS 227 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l-~~ 227 (415)
.+-+. ..+.+....|..-+--.. |....-.--+.++.+......+..-.+- |...+ +...+..+ -+
T Consensus 181 ~~~nn----~~kt~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~---~s~~~l~LKsq 248 (696)
T KOG2471|consen 181 IPANN----LLKTLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ---DSSMALLLKSQ 248 (696)
T ss_pred cchhh----hcccCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC---CCcHHHHHHHH
Confidence 11121 222233333332221111 0000111112222222222222222111 11111 22122211 22
Q ss_pred HHHhcCChHHHHHHHHHHHhc---cCCCC-----CchHHHHHHHHHhcCcHHHHHHHHHHHH-------hCCCCCCH---
Q 014978 228 SLVKLGEFEKAENIYDEWESI---SGTGD-----PRVPNILLAAYINRNQLEMAESFYNRLV-------TKGIKPCY--- 289 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~p~~--- 289 (415)
.+.-.|++.+|.+++...--. |...+ -..||.|...+.+.|.+..+..+|...+ ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344567888887777653221 11111 1123555555556666666666665544 24544422
Q ss_pred --------hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 290 --------TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 290 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
.+|| ..-.|...|++-.|.+.|.++.. -+..++..|..|..+|.-
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~---vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH---VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHH
Confidence 1222 33456788999999999999887 567788899888888863
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.37 E-value=22 Score=24.51 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 122 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+...|++++|..+.+.+ ..||...|.+|.. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666666555444 2455555544332 34455555555555555554
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.97 E-value=34 Score=31.17 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHcCC
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWIS--YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV--AYSSLLSLYTNMG 198 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 198 (415)
..+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456666544 44445676665432 2334555566677653 34444555544432 1122344445667
Q ss_pred ChHHHHHHHHHHHHcccccChh---hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch--HHHHHHHHHhcCcHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV--PNILLAAYINRNQLEMA 273 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a 273 (415)
+.+.+..+++ .|...+.. .-...+...+..|+.+-+.. +.+.|..|+... -.+.+...+..|+.+.+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~----Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKL----LIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 7766555443 33211110 11123334455666544433 334444443221 12234444566665544
Q ss_pred HHH
Q 014978 274 ESF 276 (415)
Q Consensus 274 ~~~ 276 (415)
..+
T Consensus 152 ~~L 154 (413)
T PHA02875 152 ELL 154 (413)
T ss_pred HHH
Confidence 333
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.85 E-value=82 Score=30.75 Aligned_cols=312 Identities=9% Similarity=0.016 Sum_probs=149.9
Q ss_pred HHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 22 QAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
+++.+++..-+.++..- +.+...-+....+....|+.++|.+....+=..| ...+...+.++..+.+.|.+....
T Consensus 109 La~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d- 183 (644)
T PRK11619 109 LARREDWRGLLAFSPEK---PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA- 183 (644)
T ss_pred HHHccCHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-
Confidence 34566666666632111 1355555667777777888777777776665555 334566777777777666554432
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHH
Q 014978 102 MLQELKKN-TSPDVVTYNLWLAACAS------------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI--KMELPE 166 (415)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~ 166 (415)
++.++... ...+...-..+...+.. ..+...+...+.. ++|+...-..++-++. ...+.+
T Consensus 184 ~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 184 YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHH
Confidence 33333222 12222222222221100 0111111111111 1122211111121221 234557
Q ss_pred HHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHH
Q 014978 167 KAATTLKEMEKRT-CRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 167 ~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.|...+....... ..+. ...+..+.......+...++...++...... .+......-+......++++.+...+.
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7777777654332 1111 1223333333333322445555555433221 133334444445556777777776666
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC------------CCC--------CCH-h-----HHHHHHH
Q 014978 244 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK------------GIK--------PCY-T-----TWELLTW 297 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~--------p~~-~-----~~~~l~~ 297 (415)
.|.... .....-.-.+.+++...|+.++|...|+.+... |.. |.. . .-..-+.
T Consensus 337 ~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~ 415 (644)
T PRK11619 337 RLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVR 415 (644)
T ss_pred hcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHH
Confidence 654322 223333445666666677777777777665321 111 000 0 0111234
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
.+...|....|...|..+.. . .+......+.......|.++.+......
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~---~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVA---S--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHh---c--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 45667888888888887766 2 3445555666666677877777766543
No 382
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=75.49 E-value=17 Score=22.58 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC--CcchHHHHHHHH-----HhcCcHHHHHHHH
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR--GPDTCSALLHSY-----VQNKKSAEAEALM 68 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~-----~~~~~~~~a~~~~ 68 (415)
+..++.+-..|++=+|.++++.+-...+ ....+..+|... .+.|+...|..++
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 5677888899999999999999886533 345566666543 4678888887664
No 383
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.61 E-value=2.6 Score=36.08 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=70.6
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a 168 (415)
....|.+++|++.|....+..++....|..-.+++.+.+++..|++=+....+. .||.. -|-.--.+..-.|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 345677889999998888878888888888888888999998888888887776 34432 333333344456888999
Q ss_pred HHHHHHHHhcCCCCCHHHH
Q 014978 169 ATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (415)
.+.|....+.+..+....|
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 8888888887766554443
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.32 E-value=7.2 Score=31.01 Aligned_cols=65 Identities=17% Similarity=0.036 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCC
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS 111 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (415)
-+...+.......+.+......+.+.+. ...|++.+|..++.++...|+.++|.+...++....|
T Consensus 110 ~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 110 YYAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3334333333555555444433333221 1357788888888888888888888888888776655
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=48 Score=27.30 Aligned_cols=6 Identities=33% Similarity=0.539 Sum_probs=2.2
Q ss_pred CCHhHH
Q 014978 287 PCYTTW 292 (415)
Q Consensus 287 p~~~~~ 292 (415)
|...||
T Consensus 228 psgIty 233 (284)
T KOG4642|consen 228 PSGITY 233 (284)
T ss_pred ccccch
Confidence 333333
No 386
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.25 E-value=22 Score=26.67 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 348 LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.+.+.|...+.--..+++.+.+.++. |..+++.+++.+...+..|. +.|..+.+.+
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555555444455555555555443 56666666666666656663 5666666655
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=73.44 E-value=29 Score=24.47 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776655
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.39 E-value=50 Score=27.11 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=10.3
Q ss_pred HhhhhHHHHHHHHhcCc
Q 014978 24 QALQTRARENFFENLPD 40 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~ 40 (415)
-.+++++|.++|..+..
T Consensus 26 g~~k~eeAadl~~~Aan 42 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAAN 42 (288)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 34466777777765543
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.31 E-value=12 Score=23.12 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=9.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 014978 155 LTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++.+|...|++++|.+++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 390
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.84 E-value=13 Score=22.17 Aligned_cols=29 Identities=10% Similarity=-0.051 Sum_probs=17.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
+..++.+.|+++.|.+..+.+.+..|.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 44456666777777777777776666643
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.69 E-value=52 Score=27.02 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=96.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 303 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 303 (415)
..+..|.+.-++..|-...+++. +| ..+-.+ +--|.+..+..-..++.+-....+++-+..-..+++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIi----EP-IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKII----EP-IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhh----hh-HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 34455555555555444444432 11 111222 223455555555555555555555655555555553 56789
Q ss_pred CHHHHHHHHHHhHhcccC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 304 QMEKVLECFKKAIGSVRK-----------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
+..+|+.-++.-... .+ -.|.+.....++..|. .+++++|.+++.++-+.|..|....+++.+.+-.
T Consensus 207 DMRQalNnLQst~~g-~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNG-FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKN 284 (333)
T ss_pred hHHHHHHHHHHHhcc-ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999998887662 11 1467777777877765 4689999999999999999999999998888776
Q ss_pred cCCCcHHH-HHHHHhCCC
Q 014978 373 AGKMPLII-VERMQKDNV 389 (415)
Q Consensus 373 ~g~~a~~~-~~~m~~~~~ 389 (415)
.. .+..+ ++.+++-|+
T Consensus 285 ~~-~~E~~rlE~ikeig~ 301 (333)
T KOG0991|consen 285 MD-VAESLRLEFIKEIGL 301 (333)
T ss_pred cc-HHHHHHHHHHHHHhh
Confidence 65 33222 355555554
No 392
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=53 Score=27.07 Aligned_cols=112 Identities=12% Similarity=-0.008 Sum_probs=62.5
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKAATT 171 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 171 (415)
..++..|+..|.+.....|.....|..-+.++.+..+++.+..=-++.++. .||.. ...-+..++.....+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 345666666666555444444456677777777777777777666666654 45544 333455556666777777777
Q ss_pred HHHHHh----cCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 172 LKEMEK----RTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 172 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
+.+... ..+++-...+..|..+--+.-...+..++
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 776633 22233334444444443333333333333
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.87 E-value=76 Score=28.57 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHH--hcCCcCcHHHHHHHHhhc
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYI--SNGQLDKVPQMLQELKKN 109 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 109 (415)
..+...++|..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788888888888888876 555544 3333444443 366677888888876643
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.56 E-value=23 Score=24.10 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=11.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMS 72 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~ 72 (415)
...+...|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666665555554
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.53 E-value=56 Score=26.87 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
.-+..|.+.-++.-|-...++..+ | ..+-.+++ -|.+..+..--.++.+-....++..+......++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 344555555555555555555432 2 12222333 4566666666666666666666665555555544 45789
Q ss_pred cHHHHHHHHHHHHhC-CC-----------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 269 QLEMAESFYNRLVTK-GI-----------KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+...|..-++.-... |. .|.+.....++..|. .+++++|.+.+.+..+ .|+.|.. ..+.+.+.+
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~--lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWK--LGYSPED-IITTLFRVV 282 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHH--cCCCHHH-HHHHHHHHH
Confidence 999998888766542 21 466666777777665 4789999999999888 6776643 334444443
Q ss_pred HHcCChhHHHHH-HHHHHHcCCC
Q 014978 337 EEQGDIDGAEHL-LVTLRNAGHV 358 (415)
Q Consensus 337 ~~~g~~~~a~~~-~~~~~~~~~~ 358 (415)
.+++-++.+ ++-+++.|..
T Consensus 283 ---K~~~~~E~~rlE~ikeig~t 302 (333)
T KOG0991|consen 283 ---KNMDVAESLRLEFIKEIGLT 302 (333)
T ss_pred ---HhccHHHHHHHHHHHHHhhH
Confidence 333333332 2444455544
No 396
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.86 E-value=1.1e+02 Score=29.84 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
.+|--|.+.|++++|.++..+.... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445566667777666666444332 234445555555555553
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.75 E-value=30 Score=26.03 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=30.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
..+.+.|++++..- ..++..+...+++-.|.++++.+.+.++..+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555544332 2345555555555666666666666555554444444444444444
No 398
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.49 E-value=40 Score=32.33 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...|..-+..+...++.. ....+.+..+-.-.+...-..++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3334555454444443322 44555555442223444555666667777766666666665544321 2234555556
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+.+.|+...+..+.+.+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHH-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666555555543
No 399
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.34 E-value=1e+02 Score=29.51 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-C------cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccH
Q 014978 11 VRAQSYRQRVAQAQALQTRARENFFENLPDKMR-G------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 83 (415)
Q Consensus 11 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (415)
+|....+.+-..-+..++..++++|..-...-| | ......|--+|....+.+.|.+++++..+.+ +.++.+-
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q 431 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQ 431 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHH
Confidence 567777888888899999999999987555433 2 2245567778889999999999999999865 2344444
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhc
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKN 109 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (415)
-.+..+....|.-++|+.....+...
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 45556777888999999988776543
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.83 E-value=33 Score=32.76 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 341 (415)
++..+|...|++-.+.++++.......+-+.-...++..+....+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 444445555555444444444443222222223334444444444443
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.37 E-value=3.7 Score=35.23 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=72.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCChHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-VAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 202 (415)
....|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|++=++..... .||. .-|-.-..+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 345788999999999988875 667777888888899999999999888888775 3443 334444455566789999
Q ss_pred HHHHHHHHHHcccccChhhH
Q 014978 203 VLRIWKKMMSLFAKMNDAEY 222 (415)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~ 222 (415)
|...+....+.+..+....+
T Consensus 201 aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHhccccHHHHHH
Confidence 99999999887776554433
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.31 E-value=90 Score=28.00 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=84.8
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHh----------hcCCCC
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECG--FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK----------KNTSPD 113 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~ 113 (415)
..+.-+...|...|+++.|++.|.+.+..- .+.....|..+|..-...|+|.....+..+.. ...++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 455566666777777777777776644321 01123345555555555566555444444332 224556
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhcCCCC
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKT-K-----IDPDWISYSTLTSLYIKMELPEKAATT-----LKEMEKRTCRK 182 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g-----~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 182 (415)
...+..+...+.+ ++..|.+.|-..... . +.|...+....+.++.--++-+--..+ |....+ .
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 6666666666555 666666555433211 1 223333333333333333332222121 222222 2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----ccccChhhHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FAKMNDAEYTCVIS 227 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 227 (415)
.+..+..+...|. +++...+++++++... -+.|...+...+|+
T Consensus 305 ~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3344444444443 5677777777776543 23455555555554
No 403
>PRK10941 hypothetical protein; Provisional
Probab=67.57 E-value=54 Score=27.78 Aligned_cols=75 Identities=9% Similarity=-0.053 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSL 158 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~ 158 (415)
+.+-.+|.+.++++.|+.+.+.+..-.|.+..-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455566667777777777777666666666666666666777777777776666665442 23344444444433
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.46 E-value=17 Score=22.48 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555444443
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.37 E-value=21 Score=32.42 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
.++..+.+.+.++.|+.++.++.+..|+...| ..-..++.+.+++..|+.=+.+.++.. +--...|..-..++.+.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34556677788888888888888877754443 333477788888888888777777754 1223334334445555666
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
+.+|+..|+..... .|+.......+.
T Consensus 88 ~~~A~~~l~~~~~l-~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL-APNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhc-CcCcHHHHHHHH
Confidence 67777777666554 444444443333
No 406
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.32 E-value=38 Score=23.30 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHH
Q 014978 61 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYN 118 (415)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (415)
.....+-+++....+....+-....|.-.|++.|+.+.|.+-|+.-+..+|.+.....
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 3344556666666554444444555667788888888888888876655555544333
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.13 E-value=35 Score=24.87 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=31.8
Q ss_pred cCcHHHHHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLEL 140 (415)
Q Consensus 96 ~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (415)
.+.+.++|..|... .......|...+..+...|++++|.++|+..
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34777888877664 5556667777788888888888888877653
No 408
>PRK10941 hypothetical protein; Provisional
Probab=66.35 E-value=64 Score=27.32 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYT 195 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 195 (415)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 5667788999999999999999999874 4455566667778999999999999888877652 2344544555554443
No 409
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.18 E-value=1.2e+02 Score=31.23 Aligned_cols=213 Identities=14% Similarity=0.058 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcC-----CCCcchHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcccHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDK-----MRGPDTCSALLHSYVQ-NKKSAEAEALMEKMSECGFLKCPLPYNH 85 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (415)
+..++...-.+...+++.+|..+-++-.-. .-++..|-.=+..+.+ -++.+---.++..+.+.++.. ..|..
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~ 771 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKD 771 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--ccccc
Confidence 344555555678899999998887753332 1345444444444443 455554444444454443222 22222
Q ss_pred HH---------HHHHhcCCcCcHHHHHHHHhhcC--CC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHH
Q 014978 86 ML---------NLYISNGQLDKVPQMLQELKKNT--SP-DVVTYNLWLAACASQN--DKETAEKAFLELKKTKIDPDWIS 151 (415)
Q Consensus 86 l~---------~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~ 151 (415)
.. ..........+.-.+.+.+++.. +. ....+..++.+|.+.+ ++++|+....++.+.+ ...
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ 847 (928)
T PF04762_consen 772 TYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED----PES 847 (928)
T ss_pred ccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHH
Confidence 22 00000112233444444443331 23 3344567778888887 7888888888887651 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
-...+...+= +-++.++|+.+... =|.. -+++-+-..+.|+.+=+-+++++.+. +|+..-|. |. ..
T Consensus 848 ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry~--ID--~h 913 (928)
T PF04762_consen 848 AEEALKYLCF---LVDVNKLYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRYK--ID--DH 913 (928)
T ss_pred HHHHHhHhee---eccHHHHHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheeee--Hh--hh
Confidence 1111111111 11222233322211 0111 12333444556777777777766553 22222121 21 34
Q ss_pred cCChHHHHHHHHH
Q 014978 232 LGEFEKAENIYDE 244 (415)
Q Consensus 232 ~g~~~~a~~~~~~ 244 (415)
.+++++|+.-+.+
T Consensus 914 LkRy~kAL~~L~~ 926 (928)
T PF04762_consen 914 LKRYEKALRHLSA 926 (928)
T ss_pred hCCHHHHHHHHHh
Confidence 5777777776654
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.09 E-value=43 Score=23.50 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.||...|-.+.. .+.|-.+++...+.++..
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 344444433322 344444444444444433
No 411
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=65.14 E-value=20 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
|....++.++..+++-.-.+.++..+.++.+.|..+...|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3334444455544444445555555555555555554445444444443
No 412
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.13 E-value=74 Score=25.86 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHhHhcccC-C-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 291 TWELLTWGYLKKGQ-------MEKVLECFKKAIGSVRK-W-VPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 291 ~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~-~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
.+..+.+.|...|+ ...|.+.|.++.+.... . .-+ ......+.....+.|+.++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 44455556666666 33455666665552111 1 112 2333445566778889999999888888765553
No 413
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.12 E-value=75 Score=25.92 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=48.3
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---CCchH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 014978 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 289 (415)
+.+...-++.|+--|.-...+.+|...|..- .++.+ +...+ ..-|......|+++.|.+..+.+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3344444555554444444444444444432 22332 22222 23455666777777777777776543333333
Q ss_pred hHHHHHHH----HHHhcCCHHHHHHHHHHh
Q 014978 290 TTWELLTW----GYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 290 ~~~~~l~~----~~~~~~~~~~a~~~~~~~ 315 (415)
..+-.+.. -..+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23332221 134666666666666653
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.80 E-value=60 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=21.8
Q ss_pred cCCcCcHHHHHHHHhhc----CCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 93 NGQLDKVPQMLQELKKN----TSPDVVTY--NLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~----~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
.++.++|+++++++... ..|+...| ...+.++...||..++.+.+++..+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455555555554432 22333332 2233344444555555555544443
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.68 E-value=18 Score=30.83 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 152 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 152 (415)
.|+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567777777777777777777777777754333333
No 416
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.22 E-value=47 Score=25.77 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=26.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 354 NAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
..|...+.--..++..+...++. +.++++.+.+.+..++..|. +.|..+.+.+
T Consensus 19 ~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 19 QRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 34444333333444444443332 45556666555555555553 5555555554
No 417
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.12 E-value=42 Score=22.70 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=30.1
Q ss_pred cCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 014978 109 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMEL 164 (415)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~ 164 (415)
..|.|...--.+...+...|++++|++.+-.+.+..-.. +...-..|+..+.-.|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 356666666677777777777777777776666553222 22334445554444444
No 418
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.00 E-value=93 Score=26.60 Aligned_cols=150 Identities=16% Similarity=-0.003 Sum_probs=65.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cC
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QN 128 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 128 (415)
..+++..+...+......+ +......+...|.. ..+..+|.++|....+ .........|...+.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCccc
Confidence 3455666666666655533 11233333333333 2234455555554332 2222333334444443 33
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----C
Q 014978 129 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME-------LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----M 197 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 197 (415)
+..+|..+|++..+.|..+...+...+...|..-. +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 56666666666666663332222333333333221 1224555555555543 22233333333322 2
Q ss_pred CChHHHHHHHHHHHHcc
Q 014978 198 GYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~ 214 (415)
.++.+|...|...-+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 34455555555555544
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.91 E-value=43 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=11.8
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 014978 334 NKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~ 354 (415)
......|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666665554
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.75 E-value=42 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=14.9
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 232 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
.|+.+.|.+++..+. .| +..|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 344555555554443 21 22444444444444443
No 421
>PRK12798 chemotaxis protein; Reviewed
Probab=63.61 E-value=1.2e+02 Score=27.53 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHcccccChhhHHHHHHHH-HhcCChHHHHHHHHHHH
Q 014978 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL-VKLGEFEKAENIYDEWE 246 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 246 (415)
|+.+++.+.+..+.....++....+..|+.+- ....+...|..+|+...
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 56666666665554444444444444444443 23445666666666544
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.44 E-value=28 Score=20.14 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=18.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLR 368 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~ 368 (415)
.+.|-.+++..++++|.+.|+. ++..+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4455566666666666666655 5555555443
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.26 E-value=8.8 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
|.-.+|..+|++|++.|.+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4445566666666666655553 444443
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.05 E-value=1.2e+02 Score=27.26 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
..+.-+..-|...|+++.|++.|.+.+.- ....+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34566777778888888888888875544 2333445666777777778877777776666543
No 425
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.64 E-value=3.5e+02 Score=32.39 Aligned_cols=155 Identities=11% Similarity=0.048 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCC-----C-CcchHHHHHH----HHHhcCcHHHHHHHHHHHHhcCCCCCcccH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKM-----R-GPDTCSALLH----SYVQNKKSAEAEALMEKMSECGFLKCPLPY 83 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (415)
.....+.++.+.|.+++|..+|+.+.... | +..-|..-.+ ++.+..+++--.++- .....+
T Consensus 2484 ~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~---------k~~~~~ 2554 (3550)
T KOG0889|consen 2484 PETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFG---------KHEGNY 2554 (3550)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccCCc
Confidence 34567778899999999999998866541 2 2223333333 333333333222221 223345
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcC----CCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCC-----CCCCHHHH-
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNT----SPDVVTYNLWLAACASQND-KETAEKAFLELKKTK-----IDPDWISY- 152 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g-----~~~~~~~~- 152 (415)
..++.+..+..+|..-.+.+....+.. .+....|..++..+....+ ..+..++..+..+.. .-|+..++
T Consensus 2555 ~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~ 2634 (3550)
T KOG0889|consen 2555 ELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHG 2634 (3550)
T ss_pred eeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchh
Confidence 556677777778887777777765542 2234455555555444333 333444444333221 12343332
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 153 -STLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 153 -~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..++.++..--...+|..++..+..
T Consensus 2635 h~~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2635 HVPLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666655556666666655543
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.42 E-value=54 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=17.6
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKK 108 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (415)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366666666666666666666666654
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.74 E-value=1.4e+02 Score=27.28 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHccc
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-----KDEVLRIWKKMMSLFA 215 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 215 (415)
.++.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++.....|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 35666677777777766655554444444444433332 1233444444444454
No 428
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.20 E-value=17 Score=32.90 Aligned_cols=107 Identities=11% Similarity=-0.036 Sum_probs=84.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
+..+.+.+.++.|..++.+.++.. |+.. .|..-..++.+.+++..|+.=+....+..|.....|..-..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667889999999999999864 6544 4444457888999999999888888877777777888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
.+|+..|+..... .|+..-...++.-|-+.
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHHHHH
Confidence 9999999988765 67777776676665543
No 429
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.16 E-value=74 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 276 FYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 276 ~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
+|+-+.+.+.++++..|..++.++.
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3333333333344444444444433
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.69 E-value=30 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=27.5
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 146 DPDWI-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 146 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
.||.. -|+..|....+.||+++|++++++.++.|..--..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34444 345777778888888888888888887775433333
No 431
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.58 E-value=1.3e+02 Score=26.28 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHH-H
Q 014978 119 LWLAACASQNDKETAEKAFLELKKT---KIDPDWISY--STLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVA-Y 187 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~ 187 (415)
.++...-+.++.++|+++++++.+. --.|+...| ..+..++...|+..++.+.+++..+ .+++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667889999999888644 124566655 4456677788999999999988877 566665443 4
Q ss_pred HHHHHHH-HcCCChHHH
Q 014978 188 SSLLSLY-TNMGYKDEV 203 (415)
Q Consensus 188 ~~l~~~~-~~~~~~~~a 203 (415)
..+-+-| -..|++...
T Consensus 160 Y~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 4454433 344555544
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.55 E-value=1.3e+02 Score=26.16 Aligned_cols=110 Identities=10% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 130 KETAEKAFLELKKTKI----DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566777777766421 23445555566666666665554444444443 2356666777778777888888778
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCCh--HHHHHHHH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEF--EKAENIYD 243 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 243 (415)
+++.....+..++... ..++.++...+.. +.+...+.
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 8887777532223333 3334344423333 55555554
No 433
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.93 E-value=78 Score=23.85 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=33.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHhc-CCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 352 LRNAGHVSTEIYNSLLRTYAKA-GKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~-g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.|...+.--..++..+... +.. +.++++.+.+.+...+..|. +.|..+.+.+
T Consensus 8 l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555555555555543 222 57777777777766677774 6777777666
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.12 E-value=1e+02 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014978 123 ACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~ 142 (415)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34445555555555544443
No 435
>PRK09857 putative transposase; Provisional
Probab=54.61 E-value=1.2e+02 Score=26.04 Aligned_cols=65 Identities=11% Similarity=-0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 014978 118 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (415)
..++....+.++.++..++++.+.+. .+.......++..-+.+.|..+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555443 222223333445555555555666667777776665543
No 436
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.32 E-value=28 Score=25.02 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 361 EIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 361 ~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
..-..++......+.. +.++++.|.+.+...+..|. +.|..+.+.+
T Consensus 8 ~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 8 PQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3345566666666555 68888888888888888875 7888888777
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.68 E-value=1.2e+02 Score=26.17 Aligned_cols=42 Identities=7% Similarity=0.123 Sum_probs=20.2
Q ss_pred HHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 101 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
++++.+... +.|.-.++.-+.-.+.+.=.+..++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 344444433 445444444444444444555555555555543
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.55 E-value=59 Score=23.72 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
..++|..|.+.|+-.... .|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665555433322 34455555555666666666554
No 439
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.29 E-value=43 Score=19.38 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
|-.+++...+++|.+.|+..+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333344444444444433333333
No 440
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.90 E-value=97 Score=23.32 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNM-GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
+.+.|+.++..-. .++..+... +.+-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555444332 333444433 3456677777777666655555555555555555554
No 441
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.28 E-value=1.1e+02 Score=23.75 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=30.6
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
.+.|+.++..-. .++..+...++.-.|.++++.+.+.++.++..|...-+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554444332 33344444455556666666666666555555544455555555543
No 442
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.13 E-value=1.8e+02 Score=26.08 Aligned_cols=165 Identities=7% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH----------------------
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW---------------------- 245 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------------------- 245 (415)
......+....|++....++.+ .+-...++..+-..+...|+...|.+++++.
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ---HhccCCCCCchHHHH---HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhHh-
Q 014978 246 ---ESISGTGDPRVPNIL---LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIG- 317 (415)
Q Consensus 246 ---~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~- 317 (415)
......-|...|.++ +..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred -cccCCCCCHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHHcCC
Q 014978 318 -SVRKWVPDHRLITAAYNKLEEQGDI---------------DGAEHLLVTLRNAGH 357 (415)
Q Consensus 318 -~~~~~~p~~~~~~~l~~~~~~~g~~---------------~~a~~~~~~~~~~~~ 357 (415)
.......-+...-++.-++...++. +.|...+.++...-|
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
No 443
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.12 E-value=2.1e+02 Score=30.10 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=79.2
Q ss_pred HHhcCCcCcHHH------HHHH-HhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCHHHHHHH
Q 014978 90 YISNGQLDKVPQ------MLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-------KTKIDPDWISYSTL 155 (415)
Q Consensus 90 ~~~~~~~~~a~~------~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~g~~~~~~~~~~l 155 (415)
....|.+.++.+ ++.. |....++....|..+...+-+.++.++|...-.... ....+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 333455555544 5553 333356666777888888888888888777654432 11112233355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-----c--ccChhh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR-----T--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-----A--KMNDAE 221 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~ 221 (415)
.......++...|...+.+.... | .+|...+++.+-..+...++.+.|.++.+.+.... . -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666666666666655432 1 23333444444444444566777777766655421 1 112334
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 014978 222 YTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~ 240 (415)
+..+.+.+...+++..|..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 5555555555555544433
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.97 E-value=2.4e+02 Score=27.49 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCcH
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESIS--GTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 270 (415)
+++.+|...|++..+.++++.....+ -+.-...+|..++.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56677777777777777777665432 111233455556666666654
No 445
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.22 E-value=1.7e+02 Score=30.73 Aligned_cols=125 Identities=12% Similarity=-0.002 Sum_probs=64.3
Q ss_pred HHHHHHHhhhhHHHHH------HHHh-cCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHH-------hcCCCCCccc
Q 014978 18 QRVAQAQALQTRAREN------FFEN-LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMS-------ECGFLKCPLP 82 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~------~~~~-~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~ 82 (415)
.+-.....|.+.+|.+ ++.. +....| ....|..+...+-+.|+.++|...=.+.. ..+-+.+...
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3334444555555555 5552 222233 45667777777777888877776544332 1111112334
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhc--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKN--------TSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
|..+.-.....+....|...+.+.... .|+...+++.+-..+...++++.|.++++.+.+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444455666666666554321 233444444444444445666666666666543
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.18 E-value=1.6e+02 Score=25.23 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+..+...|++.++.+.+.++.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444444444444444443
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.95 E-value=63 Score=26.96 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK----RTC-RKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
+.|...|...... .........+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++...|+.+..+.
T Consensus 162 ~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445555444332 33455566788888888999999988888753 222 2345556677788888888888777
Q ss_pred HHHHHH
Q 014978 206 IWKKMM 211 (415)
Q Consensus 206 ~~~~~~ 211 (415)
+--++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 655543
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.80 E-value=1e+02 Score=25.78 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcc--cC-CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSV--RK-WVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
.+..-|.+.|++++|.++|+.+...- .+ ..+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34445555566666665555553210 00 1222333444444455555555544443
No 449
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.77 E-value=58 Score=20.17 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=21.2
Q ss_pred HcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH-----HhcCChHHHHHH
Q 014978 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL-----VKLGEFEKAENI 241 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~ 241 (415)
.+.|++-+|-++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666654432222333444444432 234555555443
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.6e+02 Score=25.19 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKK----TKIDPDWISYS-TLTSLYIKMELPEKAATTLKEMEKRTCRKNR---- 184 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 184 (415)
..++..+...|++.++.+.+.++.++..+ .|.+.|+.... .|.-.|....-.++.++..+.|.++|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45788888999999999888887766543 45555544222 2333344444456677777777777643221
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
.+|..+. +....++.+|-.++-.............|...++..
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 1222221 122345555555555544432222233444444433
No 451
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=2.6e+02 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
|..+..++....+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 44456666677777777777777765
No 452
>PRK09857 putative transposase; Provisional
Probab=49.95 E-value=1.7e+02 Score=25.25 Aligned_cols=65 Identities=6% Similarity=0.066 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 287 (415)
+..++......++.++..++++.+.+. .+.......+++.-+.+.|.-+++.++..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 444555555666666666676666554 23344455566676766776667777777777777643
No 453
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.49 E-value=1.7e+02 Score=25.03 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=9.0
Q ss_pred ChHHHHHHHHHHHHccc
Q 014978 199 YKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~ 215 (415)
+..+|..+|++..+.|.
T Consensus 128 d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 128 DLVKALKYYEKAAKLGN 144 (292)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 44555555555555543
No 454
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.33 E-value=1.6e+02 Score=24.84 Aligned_cols=270 Identities=15% Similarity=0.120 Sum_probs=159.2
Q ss_pred cCCCCCcccHHHHHHH-HHhcCCcCcHHHHHHHHhhc----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 014978 74 CGFLKCPLPYNHMLNL-YISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT---KI 145 (415)
Q Consensus 74 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~ 145 (415)
.+-.||+..-|..-.. -.+..++++|+.-|++..+. ....-.+...++....+.+++++....|.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445776655544322 12345788999999998765 2233446677899999999999999999998632 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHccccc-
Q 014978 146 --DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRV----AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM- 217 (415)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 217 (415)
.-+..+.|++++.-+...+.+.-.++++.-... .-..+.. |-..+...|...+++.+..++++++.+.--.-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123446788888777777777776666554321 0011222 33467788888899999888888887652111
Q ss_pred ---Ch-------hhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCCCchHHHHHHH-----HHhcCcHHHHHH-HHHHH
Q 014978 218 ---ND-------AEYTCVISSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILLAA-----YINRNQLEMAES-FYNRL 280 (415)
Q Consensus 218 ---~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~g~~~~a~~-~~~~~ 280 (415)
|. ..|..-|+.|....+-.....++++.... .--|.+.... .++- ..+.|.+++|.. +|+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 25777788888888888888888876532 2234443333 3333 345678887764 34433
Q ss_pred H---hCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHH--HhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014978 281 V---TKGIKPCYTT---WELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 352 (415)
Q Consensus 281 ~---~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (415)
. +.| .|...+ |..+...+.+.|-- -|+ ++.. ....|.....+.++.+|.. +++.+-.++++.-
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKP--yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKP--YKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCC--CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 3 344 333332 44444555554410 011 1111 2334555667788888764 4565655555544
Q ss_pred H
Q 014978 353 R 353 (415)
Q Consensus 353 ~ 353 (415)
.
T Consensus 330 ~ 330 (440)
T KOG1464|consen 330 R 330 (440)
T ss_pred h
Confidence 3
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.27 E-value=1e+02 Score=22.49 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
.+.++|..|...|+-.. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777776664333 34566667777777777777777654
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.03 E-value=1.4e+02 Score=23.96 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKK 108 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (415)
...+.++..+...|+++.|-++|.-+.... +.|. ..|..-+..+.+.+.-....+.++.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 355788999999999999999999998753 2332 2466666667776665555566665543
No 457
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.67 E-value=2.1e+02 Score=25.88 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChh--hHHHHHHHH--HhcCChHHHHHHHHHHHhc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDA--EYTCVISSL--VKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 248 (415)
+..+.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455788999999999998886 444443 344455554 3467788888888887654
No 458
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.95 E-value=1.7e+02 Score=24.41 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHhcc-cCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHc
Q 014978 305 MEKVLECFKKAIGSV-RKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.+.|.+.|+.+.+.. ..++|...+...|+- .|--.++.++|.++.+...+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456777777766532 247777665544432 344678888888877766554
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.72 E-value=1.2e+02 Score=22.57 Aligned_cols=71 Identities=6% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 287 PCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
++..+--.+.+++.+..+ ..+.+.+++...+. ..+. ...-...|.-++.+.++++.++++.+.+.+..+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 444455555566655543 44555666666541 1111 11223334455667777777777777777766654
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.32 E-value=3.8e+02 Score=28.23 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----H
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----V 185 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 185 (415)
...|..+++.+-+.+..+.+.++-...++. .+++ ..+++.+.+.....|.+-+|.+.+-. .||. .
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrd 1055 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHH
Confidence 345778888888999999988887777655 2222 33677888888888888888766543 2343 3
Q ss_pred HHHHHHHHHHcCCChH------------HHHH-HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKD------------EVLR-IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
....++..++..|.++ +... +++..-+..+......|..|-.-+...+++.+|-.+.
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3556666666666654 3333 3333222222222234554444456777777765543
No 461
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.31 E-value=67 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=11.5
Q ss_pred HcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 338 EQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
..++++.++.+|....+.++.++..
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchH
Confidence 3444444555555444444443333
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.91 E-value=2.1e+02 Score=25.06 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCHHHHHHHH-HHHHcCCChHHHHHHHHHHHHcccccChh----
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEK----RTCRKNRVAYSSLL-SLYTNMGYKDEVLRIWKKMMSLFAKMNDA---- 220 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 220 (415)
..+.....-|++.|+-+.|++.+.+..+ .|.+.|+..+..-+ -.|....-..+-++..+.+.+.|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4556677788999999999888766543 46666766554433 33334444456666666667766544433
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+|..+ .|....++.+|-.+|-+...
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 34433 24456788888888876553
No 463
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.57 E-value=3.5e+02 Score=27.62 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCHHHHH--
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTK--IDP-DWISYSTLTSLYIKMELP--EKAATTLKEMEKRTCRKNRVAYS-- 188 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 188 (415)
-|..|+..|...|+.++|++++.+..+.. ..+ -...+..++.-+.+.+.. +-.+++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788888888888888888888887632 011 111233355555555444 44444444443321000000000
Q ss_pred ----------HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 189 ----------SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 189 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223456667788888888888877666666666666666653
No 464
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.56 E-value=76 Score=19.95 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=23.7
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
|....++.++..+++..-.++++..+.+..+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3344455555555555555555666655555552 34444444444333
No 465
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.56 E-value=1.7e+02 Score=24.04 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=10.0
Q ss_pred HHHHHHhcCcHHHHHHHHHH
Q 014978 260 LLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~ 279 (415)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555444
No 466
>PRK14700 recombination factor protein RarA; Provisional
Probab=44.53 E-value=2.1e+02 Score=24.73 Aligned_cols=44 Identities=11% Similarity=-0.038 Sum_probs=27.3
Q ss_pred HHHHHH---cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC
Q 014978 190 LLSLYT---NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 190 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
+++++. +..|++.|+-++.+|++.|.+|....-..++.+....|
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 34567777777777777776666555555555555555
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.96 E-value=1.6e+02 Score=23.26 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 014978 156 TSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4456667777777777776665
No 468
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.58 E-value=2.4e+02 Score=25.12 Aligned_cols=119 Identities=9% Similarity=0.032 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHHHHhcCCC--CC------cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH----hHHHHHHHHHHh
Q 014978 59 KKSAEAEALMEKMSECGFL--KC------PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACAS 126 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 126 (415)
-+++.+++++.......-. .. ....+.+-.++.+.+.....+++..+......+.. .....++..+.+
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ 152 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLE 152 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHH
Confidence 4666777777766653210 00 01234455555666666665555555444322222 234445666667
Q ss_pred cCCHHHHHHHHHHHHh-----CC-CCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 014978 127 QNDKETAEKAFLELKK-----TK-IDPDWISYSTL--TSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~-----~g-~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+++..+...++.-.. .+ ++|.....-.+ .-.|...+++++|+-+|....-
T Consensus 153 ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 153 AKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred hhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 7776665554432211 11 12221110000 1123446788888888887764
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.50 E-value=2.6e+02 Score=25.49 Aligned_cols=218 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhH----------------HHHHHHHHHhcCCHHHHHHHHHHH-
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT----------------YNLWLAACASQNDKETAEKAFLEL- 140 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~- 140 (415)
|+......+++.+-..-+-.+..+.+...+....|+..+ .-.|++.++-.||+..|+++++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ------HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 141 ------KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 141 ------~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
-..-..-...++-.+.-+|.-.+++.+|.+.|....-.-.+-.......--..=.-.+..+++..++--+....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~ 229 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLC 229 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhC
Q ss_pred cccChhhHHHHHHHH-------HhcCChHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 014978 215 AKMNDAEYTCVISSL-------VKLGEFEKAENIYDEWESISGTGD-PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 286 (415)
+..-..+....++-- ...|+.+.-.++|...--.=+.|. +..+.................-+++++.....-
T Consensus 230 p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l 309 (404)
T PF10255_consen 230 PQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKL 309 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhh
Q ss_pred CCHhHHHHH
Q 014978 287 PCYTTWELL 295 (415)
Q Consensus 287 p~~~~~~~l 295 (415)
|+..+|..|
T Consensus 310 ~~lRSyLKL 318 (404)
T PF10255_consen 310 PTLRSYLKL 318 (404)
T ss_pred hHHHHHHHh
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.29 E-value=2.2e+02 Score=24.66 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=24.7
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 240 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
++++.+.+.++.|.-..+..+.-.+.+.=.+.....+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3455555555556555555555555555556666666666554
No 471
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.91 E-value=2.3e+02 Score=24.77 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|..+..+.|+..+|.+.++++.+. .|=.. ....++.++....-+.+...++.+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444445578888888888777654 23222 233567777776666666666655433
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.89 E-value=1.7e+02 Score=25.78 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=37.5
Q ss_pred CcHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSP---DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
+++..++..+.+.+|. -+..|-.++......|.++.++.+|++++..|-.|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555554321 233566666666677777777777777777766665555555555443
No 473
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.00 E-value=2.2e+02 Score=24.34 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHH-------HHHHHHhcCCcCcHHHHHHHHhhc-----CCCCHhHHH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH-------MLNLYISNGQLDKVPQMLQELKKN-----TSPDVVTYN 118 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 118 (415)
+.+-..+.+++++|+..+.++...|+..+..+.+- +...|...|+...-.+.....++. -+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhc--------------
Q 014978 119 LWLAACASQN-DKETAEKAFLELKKTKIDPDWISY-----STLTSLYIKMELPEKAATTLKEMEKR-------------- 178 (415)
Q Consensus 119 ~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~-------------- 178 (415)
+|+..+.... .++..+.+....++.....+.... ..++..+.+.|.+.+|+.+...+...
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred ----------------------------------------------------CCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 179 ----------------------------------------------------TCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 179 ----------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
+...-..-|-.-..+|.....-.+|...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Q ss_pred HHHHHHcccccChh--hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 014978 207 WKKMMSLFAKMNDA--EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 264 (415)
Q Consensus 207 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (415)
++.|.-..+-.+.. +-+.+-.-+....--++.++....+.+.-...+...|+..+.-|
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY 308 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQY 308 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHh
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.84 E-value=2.3e+02 Score=24.42 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++..+.+.++.....+.+..+.. ...-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444445555555555554432 22233445555666777777777666554
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.01 E-value=2.1e+02 Score=23.74 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEK 177 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 177 (415)
.++..+-+.++++++..+++++...+...+..-.+.+..+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566667777788888888877777666666666666666643 2444455555555443
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.82 E-value=72 Score=22.61 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=23.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
+..+...+.+-.|.++++.+.+.++.++..|....+..+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33444444455566666666655555555554445555555553
No 477
>PRK12798 chemotaxis protein; Reviewed
Probab=39.85 E-value=2.9e+02 Score=25.12 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHcccccChh----hHHHHHHHHHhcCChH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-YTNMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFE 236 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 236 (415)
.|+..++.+.+..+.....++....|-.|+.+ .....++.+|+++|+...-. -|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57777777777777665556666666666544 33445677777777776542 22222 2333444556677777
Q ss_pred HHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 237 KAENIYDEWESISGTGDPRV---PNILLAAYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
++..+-...... +..++.. +..+...+.+.++-..-. -+..+... +.| -...|..+...-.-.|+.+-|.-.
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~-~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDA-RLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHH-HHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 766655554432 1112221 222333333333211111 12222221 122 234666666666677777777666
Q ss_pred HHHhHh
Q 014978 312 FKKAIG 317 (415)
Q Consensus 312 ~~~~~~ 317 (415)
-.++..
T Consensus 280 s~~A~~ 285 (421)
T PRK12798 280 SERALK 285 (421)
T ss_pred HHHHHH
Confidence 666665
No 478
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.82 E-value=1.1e+02 Score=20.15 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
++..+.++.-.++|+++++-+.+.|..+...-+.|=...
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~~~~ 75 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALRVTL 75 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHhhH
Confidence 445566777788888888888888877665554444333
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.67 E-value=60 Score=26.56 Aligned_cols=53 Identities=8% Similarity=0.062 Sum_probs=32.8
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.+.++.+.+.+++.+.....|.....|-.+...--+.|+++.|.+.|++..+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34555666666666666555556666666666666666666666666666554
No 480
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=39.62 E-value=3.5e+02 Score=25.91 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=41.1
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS--QNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a 168 (415)
..|++++|+...+....+ ...+..+.......-. ......-...|++..+. .|... +..-++..+.. ...+
T Consensus 321 ~~~~l~eal~~~e~~c~~-~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~--~P~~~~~le~l~~~~~~---~~~~ 394 (547)
T PF14929_consen 321 IGGRLKEALNELEKFCIS-STCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKK--DPTMSYSLERLILLHQK---DYSA 394 (547)
T ss_pred ccccHHHHHHHHHHhccC-CCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcC--CCcHHHHHHHHHhhhhh---HHHH
Confidence 345566665555554332 1222222222222222 22445555566666554 33332 11122222211 3444
Q ss_pred HHHHHHH-HhcCCCCCHHHHHHHHHHHHc
Q 014978 169 ATTLKEM-EKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 196 (415)
.++++-+ ......|+..+|--+...+.+
T Consensus 395 ~~Lle~i~~~l~~~~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 395 EQLLEMIALHLDLVPSHPIWLEFVSCFLK 423 (547)
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHh
Confidence 4555433 122233556666655555555
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.29 E-value=68 Score=26.30 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..+.++.+.+.+++.+..+.- +-....|-.+...--+.|+++.|.+.|++.++
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 345566666666666666531 11444566666666666666666666666655
No 482
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.22 E-value=1.4e+02 Score=21.23 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=15.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 120 WLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+++.+.++...++|+++++-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455556666666777776666666
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.44 E-value=1.4e+02 Score=21.16 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
++..+.++...++|+++++-|.+.|-.+...-+.|-..+.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 4455677888889999999999888887766555555544443
No 484
>cd08310 Death_NFkB-like Death domain of Nuclear Factor-KappaB precursor proteins. Death Domain (DD) of Nuclear Factor-KappaB (NF-kB) precursor proteins. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). Two of these, NF-kB1 and NF-kB2 are produced from the processing of the precursor proteins p105 and p100, respectively. In addition to RHD, p105 and p100 contain ANK repeats and a C-terminal DD. NF-kBs are regulated by the Inhibitor of NF-kB (IkB) Kinase (IKK) complex through classical and non-canonical pathways, which differ in the IKK subunits involved and downstream targets. IKKs facilitate the release of NF-kB dimers from an inactive state, allowing them to migrate to the nucleus where they regulate gene transcription. The precursor proteins p105 and p100 function
Probab=38.42 E-value=42 Score=21.59 Aligned_cols=47 Identities=6% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH-HHHHHhccCCccccccccC
Q 014978 364 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ-KVLKITSEMPVSEVSSIFS 415 (415)
Q Consensus 364 ~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~~~~~~~~~~ 415 (415)
..++..|.....+...+++.-...+ .|. .++..+.+++..++.+++|
T Consensus 25 ~~~i~~~~~~~sPt~~LL~~we~~~-----~tv~~L~~~L~~mgr~dav~~ld 72 (72)
T cd08310 25 GHLVNFIRLSPSPTKMLLDYFEMQG-----GTLERLRDALEVLGETEAVELID 72 (72)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC-----CCHHHHHHHHHHcCcHHHHHhcC
Confidence 3445555555555555555555443 344 6777888888777777664
No 485
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.37 E-value=1.7e+02 Score=21.85 Aligned_cols=66 Identities=8% Similarity=-0.019 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHhcCC---cCcHHHHHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 78 KCPLPYNHMLNLYISNGQ---LDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
++..+--.+..++.++.+ ..+-+.+++.+.+. ..........|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333444445555555443 33445556655542 1112233344555666666666666666666655
No 486
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.35 E-value=2.1e+02 Score=22.89 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 323 VPDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 323 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
.+.-...+.....+.+.|.++.|..+++
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444555555666666677776666666
No 487
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.25 E-value=4.8e+02 Score=27.08 Aligned_cols=275 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHH-------HHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYN-------LWLAACASQND---KETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
+++.....++.|+..|+++....|.-...|. +++.-....|+ +++|+.-|+.+... +.-+--|---.-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----------------------------------------------------------
Q 014978 158 LYIKMELPEKAATTLKEMEKR----------------------------------------------------------- 178 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~----------------------------------------------------------- 178 (415)
+|.+.|++++-.+-+.-..++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Q ss_pred ----------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 179 ----------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 179 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
..+.+...-..-+-...-.|..---.+++++..+.. +..+.....-..+..|.++-+.+..+.+.+.
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLR---DYRALADIFYVACDLGNWEFFSQFSDILAEV 717 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q ss_pred cCCCCCchHHHH-------------HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 249 SGTGDPRVPNIL-------------LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 249 ~~~~~~~~~~~l-------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
...-..+-+.. +.++.....++++.+.+.......+ ...+..++.-+.-.++.+....+.+..
T Consensus 718 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (932)
T PRK13184 718 -SDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLI 793 (932)
T ss_pred -hhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHH
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 316 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 316 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
........-.......-+.+|.-..+++.|-+++................++.+|.
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (932)
T PRK13184 794 YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCY 849 (932)
T ss_pred HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHH
No 488
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.25 E-value=1.4e+02 Score=20.97 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 014978 156 TSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~ 174 (415)
+.-|...++.++|..-+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3334444444444444444
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.58 E-value=2.1e+02 Score=22.81 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHH-HHHhcC--CHHHHHH
Q 014978 62 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLA-ACASQN--DKETAEK 135 (415)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~-~~~~~~--~~~~a~~ 135 (415)
++++++-.++.. +...+-.....|++++|..-++++.+. .+.-...|..+.. +++..+ .+-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHhCCCCCCH---HHHHHHHHHHHhc--------------CCHHHHHHHHHHHHh
Q 014978 136 AFLELKKTKIDPDW---ISYSTLTSLYIKM--------------ELPEKAATTLKEMEK 177 (415)
Q Consensus 136 ~~~~~~~~g~~~~~---~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~ 177 (415)
++.-+...+.+... +.....+.+.+.. |+++.|.+.++-|..
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 490
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.42 E-value=26 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=24.7
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
.-|.-..|..+|.+|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566678899999999998776 588887654
No 491
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.36 E-value=1.3e+02 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 237 (415)
..|+.+.|.++++.+. .|+ ..|...+.++...|.-.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhh
Confidence 3455555555555554 322 134455555555544433
No 492
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.18 E-value=2.8e+02 Score=24.07 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 112 PDVVTYNLWLA--ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 112 ~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
+.+..++-+|+ .|...+--++..+++.-+.-- .++...--+++.+..-.+ |..|..+.-..
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F--~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~~L 171 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLF--EENERKKLAMLTALLLSN---------------GTLPATVLQSL 171 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHhC---------------CCCCHHHHHHH
Q ss_pred HHHHHHcCCCh-HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 190 LLSLYTNMGYK-DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 190 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
+-..+.+.|-. .=|.++|+....... .+.++.++.+.+.-+.-.++| +|+..+-..+...+...|
T Consensus 172 ~~d~LVkeGi~l~F~~~lFk~~~~Ek~------i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 172 LNDNLVKEGIALSFAVKLFKEWLVEKD------INDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHhhHHHHhHHHHHHHHHHHHHHhhcc------HHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhh
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
--+...-.-.++.. ..-...-..|..-..+...+++.....++-.+ ...-|+......+-.+....+.|..-.+.
T Consensus 238 L~elvey~~~q~~~---~a~kElq~~L~~q~s~e~p~~evi~~VKee~k--~~nlPe~eVi~ivWs~iMsaveWnKkeel 312 (412)
T KOG2297|consen 238 LKELVEYHRNQQSE---GARKELQKELQEQVSEEDPVKEVILYVKEEMK--RNNLPETEVIGIVWSGIMSAVEWNKKEEL 312 (412)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--hcCCCCceEEeeeHhhhhHHHhhchHHHH
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 014978 349 LVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 386 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 386 (415)
...-.-..... |.-|+.+++..|+..+.++-..+.
T Consensus 313 va~qalrhlK~---yaPLL~af~s~g~sEL~Ll~KvQe 347 (412)
T KOG2297|consen 313 VAEQALRHLKQ---YAPLLAAFCSQGQSELELLLKVQE 347 (412)
T ss_pred HHHHHHHHHHh---hhHHHHHHhcCChHHHHHHHHHHH
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.85 E-value=42 Score=17.54 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCcccHHH
Q 014978 60 KSAEAEALMEKMSECGFLKCPLPYNH 85 (415)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (415)
.++.|..+|+..... .|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 356666677766653 366665544
No 494
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=36.73 E-value=4.9e+02 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
|..++..-...+...|++..+.+++.++.
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kli 1258 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLI 1258 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433444444455555555554444
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.20 E-value=1.3e+02 Score=20.14 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
++|+-....|+..|...|..++..+...=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444555555555543
No 496
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.09 E-value=2e+02 Score=21.72 Aligned_cols=48 Identities=4% Similarity=-0.088 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHhcCC-HHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 289 YTTWELLTWGYLKKGQ-MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
..+|..++.+..+..- --.+..+|.-+.+ .+.+++..-|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~--~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK--NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHc
Confidence 3445555555433333 2234444444444 3445555555555555444
No 497
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=3.8e+02 Score=25.04 Aligned_cols=325 Identities=14% Similarity=0.082 Sum_probs=172.3
Q ss_pred HHhhhhHHHHHHHHhcCcC---CCC-----cchHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCcccHH-----HHHH
Q 014978 23 AQALQTRARENFFENLPDK---MRG-----PDTCSALLHSYVQNK-KSAEAEALMEKMSECGFLKCPLPYN-----HMLN 88 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~ 88 (415)
.-..+++.|...++.+... -|+ -.+++.|...|.... .+..+..++++..+.. .+...|. .++.
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--q~~p~wsckllfQLaq 135 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQ 135 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHH
Confidence 4455677777777764443 122 346777888888766 8889999999887642 2222332 3445
Q ss_pred HHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH------HhcCC---HHHHHHHHHHHHhCCCCCCHHHH-------
Q 014978 89 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC------ASQND---KETAEKAFLELKKTKIDPDWISY------- 152 (415)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~---~~~a~~~~~~~~~~g~~~~~~~~------- 152 (415)
...-..++..|.+++.--.+...+-...|..++..+ .-..+ ++.+.....++.+. ..+|...-
T Consensus 136 l~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 136 LHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFY 214 (629)
T ss_pred HHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHH
Confidence 566678899999886543332233333333333222 22233 44455555556554 34554321
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhc---CC------------CCCHHHHHHH-------------HHHHHcCCChHHH
Q 014978 153 -STLTSLYIKMELPEKAATTLKEMEKR---TC------------RKNRVAYSSL-------------LSLYTNMGYKDEV 203 (415)
Q Consensus 153 -~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l-------------~~~~~~~~~~~~a 203 (415)
+.-+.-|.-.|+...+...++++... +- .|+...+.-+ ...-...|-+++|
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 12233455568887777777766542 11 1121111111 1111123555566
Q ss_pred HHHHHHHHHcc----ccc-ChhhHH--------HHHHHHHhcCChHHHHHHHHHHHhccC-CCCCc-------hHHHHHH
Q 014978 204 LRIWKKMMSLF----AKM-NDAEYT--------CVISSLVKLGEFEKAENIYDEWESISG-TGDPR-------VPNILLA 262 (415)
Q Consensus 204 ~~~~~~~~~~~----~~~-~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-------~~~~l~~ 262 (415)
.++-++++..- ..+ ....++ .++-+-.-.|++.+|++-+..|.+... .|.+. ....++.
T Consensus 295 ~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG 374 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG 374 (629)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence 65555544321 111 111111 112122347999999998888876421 22211 1122333
Q ss_pred H-HHhcCcHHHHHHHHHHHHhCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHH------H--
Q 014978 263 A-YINRNQLEMAESFYNRLVTKGIKPCYTTW--ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT------A-- 331 (415)
Q Consensus 263 ~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~------~-- 331 (415)
. ++.-|.++.|..-|....+.--.-|...+ ..+...|.+.|+-+.-.++++..-. |+..++. .
T Consensus 375 lys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p------~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 375 LYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP------LNTNSLSSQRLEASIL 448 (629)
T ss_pred hHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC------CCCCcchHHHHHHHHH
Confidence 3 34568899999988887664322233322 2455678888887777666665432 2221111 1
Q ss_pred HHH--HHHHcCChhHHHHHHHHHHHcC
Q 014978 332 AYN--KLEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 332 l~~--~~~~~g~~~~a~~~~~~~~~~~ 356 (415)
++. .....+++.+|..++.+-.+..
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 111 1346799999999999887644
No 498
>cd08791 DED_DEDD2 Death Effector Domain of DEDD2. Death Effector Domain (DED) found in DEDD2. DEDD2 has been shown to bind to itself, DEDD, and to the two tandem DED-containing caspases, caspase-8 and -10. It may play a role in apoptosis. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways.
Probab=34.92 E-value=93 Score=21.55 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHhCCCCCCHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-IIVERMQKDNVQMDAETQ 396 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~-~~~~~m~~~~~~p~~~t~ 396 (415)
++..+.++|..+.+.|.-++.....|+..+..-++.++ .....-+...+.|+..++
T Consensus 48 ~i~SGldLf~~Leer~~l~e~Nt~~L~qLLr~i~RhDLl~~v~~k~r~~v~p~~~~~ 104 (106)
T cd08791 48 RPKSGVELLLELERRGYCDESNLRPLLQLLRVLTRHDLLPFVSQKRRRTVSPERYKY 104 (106)
T ss_pred hccCHHHHHHHHHHhCcCChhhHHHHHHHHHHhhHHHHHHHHHHhccCCCCcchhcc
Confidence 67778888888888887777777777777777676653 333334446777877654
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.64 E-value=1.2e+02 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
-.|.++++.+.+.+...+..|....++.+...|
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 334444444443333333333333333333333
No 500
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.57 E-value=4.9e+02 Score=26.13 Aligned_cols=149 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------
Q 014978 129 DKETAEKAFLELKK--------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR---------------------- 178 (415)
Q Consensus 129 ~~~~a~~~~~~~~~--------~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------- 178 (415)
+.++...+++.... .++..+......++... .|+..+++.+++.+...
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Q ss_pred --------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC-----ChHHHHHHHHHH
Q 014978 179 --------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-----EFEKAENIYDEW 245 (415)
Q Consensus 179 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~ 245 (415)
| .+.....+.++..+.. ++++.|+.++.+|.+.|..|....-..++.+....| ....|...+...
T Consensus 247 ~~~~ydk~g-d~hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~ 324 (725)
T PRK13341 247 RAVLYDKEG-DAHFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAF 324 (725)
T ss_pred hhhhcccCC-CCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q ss_pred HhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 246 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
...|.+-........+-.++.+-+...+ ..++...+
T Consensus 325 ~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 325 ERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred HHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
Done!