Query 014978
Match_columns 415
No_of_seqs 694 out of 1898
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 04:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.2E-36 1.1E-40 284.5 31.0 386 17-413 89-538 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-34 4.2E-39 273.7 41.1 366 17-387 122-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-31 1.2E-35 236.5 43.0 367 18-395 5-374 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-30 1.2E-34 229.9 42.5 353 14-375 35-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-32 5.8E-37 249.1 24.6 184 117-300 29-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.4E-32 4.8E-37 249.6 22.9 207 62-268 7-224 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 3.1E-26 1.1E-30 208.5 37.4 332 28-369 8-372 (450)
8 2gw1_A Mitochondrial precursor 100.0 2E-26 6.9E-31 213.4 34.9 374 14-396 8-485 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 2.2E-25 7.5E-30 203.0 38.3 354 13-376 27-441 (450)
10 3fp2_A TPR repeat-containing p 99.9 5E-24 1.7E-28 198.5 35.8 368 14-388 27-492 (537)
11 3ieg_A DNAJ homolog subfamily 99.9 5.4E-23 1.9E-27 181.1 38.5 318 46-372 4-352 (359)
12 2gw1_A Mitochondrial precursor 99.9 2.8E-24 9.5E-29 199.0 29.8 356 45-411 6-469 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 2.1E-22 7.2E-27 177.4 34.7 313 15-337 6-351 (359)
14 3hym_B Cell division cycle pro 99.9 2.7E-22 9.2E-27 174.6 31.6 294 43-370 20-314 (330)
15 3hym_B Cell division cycle pro 99.9 1.9E-21 6.4E-26 169.3 34.3 286 14-304 24-320 (330)
16 3fp2_A TPR repeat-containing p 99.9 2.2E-21 7.5E-26 180.6 36.0 340 13-363 60-499 (537)
17 1fch_A Peroxisomal targeting s 99.9 1.3E-21 4.3E-26 173.2 25.7 313 25-350 14-354 (368)
18 1fch_A Peroxisomal targeting s 99.9 3E-21 1E-25 170.8 26.4 291 22-317 35-358 (368)
19 4eqf_A PEX5-related protein; a 99.9 4.9E-21 1.7E-25 169.3 21.9 268 79-351 64-352 (365)
20 2xm6_A Protein corresponding t 99.9 6.6E-18 2.3E-22 155.1 42.9 348 15-390 42-435 (490)
21 4eqf_A PEX5-related protein; a 99.9 1.8E-20 6.2E-25 165.6 24.6 260 111-377 62-344 (365)
22 3cv0_A Peroxisome targeting si 99.9 4.2E-20 1.4E-24 160.5 24.1 233 44-281 20-267 (327)
23 3cv0_A Peroxisome targeting si 99.9 2.5E-20 8.7E-25 161.9 22.3 263 14-280 23-312 (327)
24 2xm6_A Protein corresponding t 99.9 1.1E-17 3.9E-22 153.6 38.4 331 15-371 78-451 (490)
25 2ooe_A Cleavage stimulation fa 99.9 1.6E-17 5.6E-22 154.1 38.7 359 21-387 21-454 (530)
26 1b89_A Protein (clathrin heavy 99.9 1.9E-20 6.6E-25 162.6 17.2 309 23-374 14-342 (449)
27 4g1t_A Interferon-induced prot 99.8 1.2E-17 4.2E-22 152.7 33.3 354 17-387 56-459 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 1.2E-18 4.1E-23 148.1 24.2 244 24-281 11-262 (291)
29 1b89_A Protein (clathrin heavy 99.8 2.5E-20 8.5E-25 161.9 13.7 289 57-389 15-311 (449)
30 3mkr_A Coatomer subunit epsilo 99.8 8E-18 2.7E-22 143.0 26.7 248 55-317 9-263 (291)
31 2ooe_A Cleavage stimulation fa 99.8 1.4E-16 4.8E-21 147.8 34.5 368 36-414 3-448 (530)
32 3uq3_A Heat shock protein STI1 99.8 4.2E-17 1.5E-21 136.3 24.5 227 114-356 5-237 (258)
33 3spa_A Mtrpol, DNA-directed RN 99.8 4.3E-19 1.5E-23 166.5 10.1 122 111-232 124-249 (1134)
34 3uq3_A Heat shock protein STI1 99.8 8.4E-17 2.9E-21 134.5 22.5 222 46-281 6-234 (258)
35 2pl2_A Hypothetical conserved 99.8 4.3E-17 1.5E-21 132.5 20.0 82 45-127 5-86 (217)
36 3u4t_A TPR repeat-containing p 99.8 1.6E-16 5.4E-21 134.1 23.9 229 16-248 7-250 (272)
37 2pl2_A Hypothetical conserved 99.8 6.3E-17 2.1E-21 131.5 20.6 197 78-279 3-210 (217)
38 4g1t_A Interferon-induced prot 99.8 1.3E-14 4.3E-19 132.7 38.2 309 44-361 50-407 (472)
39 3u4t_A TPR repeat-containing p 99.8 4E-16 1.4E-20 131.6 25.5 253 116-373 5-268 (272)
40 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-18 3.9E-23 163.6 9.4 123 146-268 124-250 (1134)
41 1xi4_A Clathrin heavy chain; a 99.8 2.3E-15 7.7E-20 146.0 31.6 320 18-386 1055-1381(1630)
42 2h6f_A Protein farnesyltransfe 99.8 7.9E-16 2.7E-20 135.1 25.7 252 113-373 96-366 (382)
43 1ouv_A Conserved hypothetical 99.7 8.6E-15 3E-19 123.5 31.1 229 111-359 3-255 (273)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.3E-17 3.2E-21 135.7 18.9 218 25-247 18-243 (275)
45 2h6f_A Protein farnesyltransfe 99.7 9.7E-16 3.3E-20 134.5 23.9 247 45-299 97-363 (382)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-16 6.9E-21 133.6 18.3 184 57-245 17-203 (275)
47 2q7f_A YRRB protein; TPR, prot 99.7 8.7E-16 3E-20 127.1 21.1 212 150-368 24-235 (243)
48 2ho1_A Type 4 fimbrial biogene 99.7 4.7E-15 1.6E-19 123.5 25.6 198 82-282 39-237 (252)
49 2ho1_A Type 4 fimbrial biogene 99.7 7.3E-15 2.5E-19 122.3 26.5 204 152-361 40-244 (252)
50 2vq2_A PILW, putative fimbrial 99.7 6.4E-15 2.2E-19 120.3 25.3 202 44-247 7-210 (225)
51 2q7f_A YRRB protein; TPR, prot 99.7 4.8E-16 1.6E-20 128.7 18.7 196 83-282 26-221 (243)
52 2vq2_A PILW, putative fimbrial 99.7 1.3E-14 4.4E-19 118.5 26.9 206 151-362 10-218 (225)
53 3e4b_A ALGK; tetratricopeptide 99.7 5.1E-15 1.7E-19 133.9 26.1 347 16-389 7-389 (452)
54 1ouv_A Conserved hypothetical 99.7 2.6E-14 8.8E-19 120.6 28.4 218 83-317 9-250 (273)
55 1xi4_A Clathrin heavy chain; a 99.7 6.1E-14 2.1E-18 136.3 33.7 309 23-374 1087-1415(1630)
56 3sf4_A G-protein-signaling mod 99.7 1.2E-15 4.2E-20 136.4 20.7 176 200-376 163-363 (406)
57 3e4b_A ALGK; tetratricopeptide 99.7 4.2E-14 1.4E-18 128.0 28.6 319 19-360 42-392 (452)
58 3sf4_A G-protein-signaling mod 99.7 1E-15 3.6E-20 136.9 17.8 296 47-343 11-364 (406)
59 3ro2_A PINS homolog, G-protein 99.7 5.3E-16 1.8E-20 134.9 15.1 273 14-317 7-331 (338)
60 4a1s_A PINS, partner of inscut 99.7 2.8E-15 9.5E-20 134.5 20.1 270 88-357 56-374 (411)
61 4a1s_A PINS, partner of inscut 99.7 7.8E-16 2.7E-20 138.1 15.8 271 45-317 48-371 (411)
62 3ro2_A PINS homolog, G-protein 99.7 9.5E-15 3.3E-19 126.9 20.3 269 88-356 13-333 (338)
63 2ond_A Cleavage stimulation fa 99.6 1.4E-13 4.8E-18 118.2 24.4 218 29-249 33-271 (308)
64 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-14 1.8E-18 111.1 19.9 167 44-213 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.6 4.4E-13 1.5E-17 115.0 26.5 216 62-282 33-269 (308)
66 4abn_A Tetratricopeptide repea 99.6 3E-14 1E-18 129.7 19.3 213 97-314 85-317 (474)
67 3ulq_A Response regulator aspa 99.6 1.1E-13 3.9E-18 122.8 22.5 231 120-354 109-367 (383)
68 3ulq_A Response regulator aspa 99.6 2.6E-14 8.8E-19 126.9 17.5 299 15-318 15-368 (383)
69 4abn_A Tetratricopeptide repea 99.6 6.4E-14 2.2E-18 127.6 19.6 195 148-349 101-315 (474)
70 3vtx_A MAMA; tetratricopeptide 99.6 2.6E-13 8.9E-18 107.0 20.5 167 113-283 4-170 (184)
71 3nf1_A KLC 1, kinesin light ch 99.6 1E-14 3.4E-19 125.4 11.3 239 114-355 27-307 (311)
72 3nf1_A KLC 1, kinesin light ch 99.6 6.7E-15 2.3E-19 126.5 10.0 168 45-212 27-223 (311)
73 3q15_A PSP28, response regulat 99.5 3E-12 1E-16 113.3 25.0 307 43-354 8-364 (378)
74 1hz4_A MALT regulatory protein 99.5 1.2E-11 4.2E-16 109.2 27.5 202 153-354 97-321 (373)
75 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.6E-17 102.8 19.0 159 16-176 12-171 (186)
76 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.3E-17 103.0 18.4 165 46-213 9-173 (186)
77 4e6h_A MRNA 3'-END-processing 99.5 1.9E-10 6.7E-15 107.7 35.2 361 23-388 77-571 (679)
78 1hz4_A MALT regulatory protein 99.5 2.5E-11 8.4E-16 107.2 27.4 265 52-317 21-321 (373)
79 1qqe_A Vesicular transport pro 99.5 6.8E-12 2.3E-16 106.7 21.8 194 158-355 46-269 (292)
80 4gyw_A UDP-N-acetylglucosamine 99.5 1.2E-12 4E-17 124.1 18.6 166 44-212 8-173 (723)
81 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.8E-16 101.3 21.5 210 146-369 4-223 (228)
82 4e6h_A MRNA 3'-END-processing 99.5 2.7E-10 9.1E-15 106.8 32.8 357 28-389 48-535 (679)
83 3q15_A PSP28, response regulat 99.5 6.2E-12 2.1E-16 111.3 21.0 293 21-317 21-364 (378)
84 4gyw_A UDP-N-acetylglucosamine 99.5 2.4E-12 8.1E-17 122.0 19.0 166 79-247 8-173 (723)
85 4i17_A Hypothetical protein; T 99.5 5.3E-12 1.8E-16 103.2 18.5 195 44-249 6-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.4 7.1E-12 2.4E-16 105.8 18.2 157 91-247 12-197 (283)
87 3edt_B KLC 2, kinesin light ch 99.4 1.8E-11 6.3E-16 103.3 17.5 228 125-355 12-281 (283)
88 3urz_A Uncharacterized protein 99.3 1.9E-11 6.4E-16 98.3 13.9 111 14-125 6-133 (208)
89 1qqe_A Vesicular transport pro 99.3 1.9E-10 6.5E-15 97.7 20.4 234 63-317 3-268 (292)
90 3mv2_B Coatomer subunit epsilo 99.3 1.2E-09 4.2E-14 91.1 23.8 242 53-317 21-281 (310)
91 3mv2_B Coatomer subunit epsilo 99.3 9.5E-10 3.2E-14 91.8 22.7 250 88-360 21-287 (310)
92 4ga2_A E3 SUMO-protein ligase 99.3 1.8E-11 6.3E-16 92.6 10.9 141 21-163 6-148 (150)
93 2fo7_A Synthetic consensus TPR 99.3 2E-10 6.9E-15 84.9 16.5 125 119-246 6-130 (136)
94 3qky_A Outer membrane assembly 99.3 1.5E-10 5.1E-15 96.7 17.2 99 44-143 14-126 (261)
95 3qky_A Outer membrane assembly 99.3 9.1E-10 3.1E-14 91.9 22.0 191 149-359 15-228 (261)
96 2r5s_A Uncharacterized protein 99.3 5.4E-11 1.8E-15 92.9 13.5 162 14-177 8-172 (176)
97 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5.3E-15 85.5 15.3 126 85-212 6-131 (136)
98 3dra_A Protein farnesyltransfe 99.3 1.1E-08 3.9E-13 86.2 28.2 235 97-368 50-301 (306)
99 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.6E-10 8.8E-15 92.9 16.9 180 14-215 6-215 (225)
100 3urz_A Uncharacterized protein 99.3 6.1E-10 2.1E-14 89.4 18.6 134 190-331 60-195 (208)
101 2pzi_A Probable serine/threoni 99.3 2.5E-11 8.6E-16 115.5 12.0 170 59-233 405-582 (681)
102 2pzi_A Probable serine/threoni 99.2 1.4E-10 4.8E-15 110.3 16.1 185 91-280 402-602 (681)
103 2ifu_A Gamma-SNAP; membrane fu 99.2 6.1E-10 2.1E-14 95.3 18.2 199 24-246 3-222 (307)
104 4ga2_A E3 SUMO-protein ligase 99.2 6.2E-11 2.1E-15 89.7 10.6 146 51-199 3-149 (150)
105 2uy1_A Cleavage stimulation fa 99.2 6.2E-08 2.1E-12 88.2 32.0 353 13-385 15-411 (493)
106 2vsy_A XCC0866; transferase, g 99.2 2.2E-10 7.5E-15 107.1 15.5 153 25-179 2-158 (568)
107 3dra_A Protein farnesyltransfe 99.2 1.6E-08 5.3E-13 85.3 24.8 220 59-282 47-286 (306)
108 2vsy_A XCC0866; transferase, g 99.2 1.3E-09 4.5E-14 101.8 19.5 152 59-213 3-157 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.3E-09 1.5E-13 85.6 20.2 189 148-359 3-217 (225)
110 2r5s_A Uncharacterized protein 99.2 3.6E-10 1.2E-14 88.1 13.2 159 84-245 10-170 (176)
111 3qou_A Protein YBBN; thioredox 99.2 2.8E-10 9.7E-15 96.3 13.4 167 44-212 116-283 (287)
112 2ifu_A Gamma-SNAP; membrane fu 99.2 1.8E-09 6.2E-14 92.4 18.3 164 58-246 4-182 (307)
113 3rjv_A Putative SEL1 repeat pr 99.2 6.2E-09 2.1E-13 83.7 19.9 176 98-284 4-198 (212)
114 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.9E-14 92.6 16.2 168 110-281 113-282 (287)
115 3rjv_A Putative SEL1 repeat pr 99.2 7.7E-09 2.6E-13 83.2 20.0 141 132-282 4-157 (212)
116 2uy1_A Cleavage stimulation fa 99.1 7.9E-08 2.7E-12 87.5 26.7 331 24-384 6-380 (493)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.9E-09 1.7E-13 84.4 16.8 127 15-144 9-151 (213)
118 4f3v_A ESX-1 secretion system 99.0 2.1E-09 7.1E-14 88.6 10.3 194 14-212 9-236 (282)
119 3gyz_A Chaperone protein IPGC; 99.0 2E-09 6.9E-14 81.0 9.4 109 34-143 24-133 (151)
120 3q7a_A Farnesyltransferase alp 99.0 2.6E-07 8.7E-12 78.8 23.3 181 50-234 59-257 (349)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.7E-08 9.3E-13 79.9 16.7 127 47-178 8-150 (213)
122 3q7a_A Farnesyltransferase alp 99.0 4.7E-07 1.6E-11 77.2 24.7 256 92-368 66-345 (349)
123 4gco_A Protein STI-1; structur 99.0 3.2E-09 1.1E-13 77.5 10.0 110 45-156 13-122 (126)
124 3u3w_A Transcriptional activat 99.0 3.2E-07 1.1E-11 77.8 23.5 164 191-354 82-265 (293)
125 4gco_A Protein STI-1; structur 99.0 3.8E-08 1.3E-12 71.7 14.8 109 256-368 15-123 (126)
126 2e2e_A Formate-dependent nitri 98.9 1.5E-08 5.2E-13 78.8 13.0 122 91-214 21-145 (177)
127 1p5q_A FKBP52, FK506-binding p 98.9 1.4E-09 4.7E-14 94.2 7.6 156 26-203 127-283 (336)
128 1a17_A Serine/threonine protei 98.9 2.2E-08 7.7E-13 76.8 13.7 96 47-143 15-110 (166)
129 3u3w_A Transcriptional activat 98.9 1E-07 3.5E-12 80.9 18.9 159 87-245 82-263 (293)
130 2c2l_A CHIP, carboxy terminus 98.9 1.8E-08 6.2E-13 84.8 13.9 195 112-317 2-198 (281)
131 2e2e_A Formate-dependent nitri 98.9 3.9E-09 1.3E-13 82.2 8.7 120 23-143 21-144 (177)
132 1a17_A Serine/threonine protei 98.9 4.9E-08 1.7E-12 74.9 14.5 127 116-245 15-143 (166)
133 2c2l_A CHIP, carboxy terminus 98.9 2.1E-08 7E-13 84.5 13.2 196 147-355 2-199 (281)
134 3gw4_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 78.8 13.6 23 152-174 69-91 (203)
135 2vgx_A Chaperone SYCD; alterna 98.9 2.7E-08 9.1E-13 74.8 12.3 110 102-213 9-118 (148)
136 1na0_A Designed protein CTPR3; 98.9 1.4E-07 4.8E-12 68.2 15.8 115 255-373 10-124 (125)
137 3gyz_A Chaperone protein IPGC; 98.9 1.3E-08 4.5E-13 76.5 10.3 101 111-213 33-133 (151)
138 1na0_A Designed protein CTPR3; 98.9 4.5E-08 1.6E-12 70.8 13.0 97 46-143 10-106 (125)
139 3dss_A Geranylgeranyl transfer 98.9 3.8E-06 1.3E-10 71.3 25.8 251 91-370 40-319 (331)
140 2qfc_A PLCR protein; TPR, HTH, 98.9 3.2E-07 1.1E-11 77.8 19.5 166 81-246 76-264 (293)
141 2lni_A Stress-induced-phosphop 98.9 5.7E-08 2E-12 71.3 13.2 60 151-211 52-111 (133)
142 2vgx_A Chaperone SYCD; alterna 98.9 5.9E-09 2E-13 78.4 7.8 99 44-143 20-118 (148)
143 2lni_A Stress-induced-phosphop 98.9 7E-08 2.4E-12 70.8 13.6 118 254-375 16-133 (133)
144 1p5q_A FKBP52, FK506-binding p 98.9 7.8E-09 2.7E-13 89.5 9.5 151 93-245 126-291 (336)
145 2vyi_A SGTA protein; chaperone 98.9 3.8E-08 1.3E-12 71.9 11.9 116 46-163 13-128 (131)
146 2qfc_A PLCR protein; TPR, HTH, 98.8 7E-07 2.4E-11 75.7 21.0 172 111-282 72-265 (293)
147 4f3v_A ESX-1 secretion system 98.8 3.5E-08 1.2E-12 81.3 12.3 127 119-248 107-237 (282)
148 2vyi_A SGTA protein; chaperone 98.8 2.6E-07 9E-12 67.3 16.0 118 255-376 13-130 (131)
149 3gw4_A Uncharacterized protein 98.8 1.4E-07 4.6E-12 75.1 15.2 121 125-246 3-134 (203)
150 3dss_A Geranylgeranyl transfer 98.8 1.6E-06 5.4E-11 73.6 22.0 162 24-188 41-231 (331)
151 2xcb_A PCRH, regulatory protei 98.8 1.9E-08 6.5E-13 75.1 9.2 109 34-143 6-115 (142)
152 2xcb_A PCRH, regulatory protei 98.8 8.3E-08 2.8E-12 71.6 11.8 101 111-213 15-115 (142)
153 2fbn_A 70 kDa peptidylprolyl i 98.8 1.1E-08 3.8E-13 81.3 6.9 142 21-164 13-171 (198)
154 2fbn_A 70 kDa peptidylprolyl i 98.8 1.8E-08 6.2E-13 80.1 8.1 145 89-236 13-173 (198)
155 3upv_A Heat shock protein STI1 98.7 4.3E-07 1.5E-11 66.0 14.3 98 114-213 4-101 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.7 4.5E-07 1.5E-11 64.7 13.5 94 117-212 7-100 (118)
157 1elw_A TPR1-domain of HOP; HOP 98.7 7.6E-07 2.6E-11 63.5 14.3 110 256-369 6-115 (118)
158 3upv_A Heat shock protein STI1 98.7 7.5E-07 2.6E-11 64.7 14.4 97 256-356 6-102 (126)
159 4gcn_A Protein STI-1; structur 98.7 2.7E-07 9.1E-12 67.2 11.5 95 117-212 11-111 (127)
160 2kck_A TPR repeat; tetratricop 98.7 4E-07 1.4E-11 64.3 12.3 97 114-212 6-105 (112)
161 2kck_A TPR repeat; tetratricop 98.7 2.6E-07 8.9E-12 65.3 11.0 99 44-143 5-106 (112)
162 3q49_B STIP1 homology and U bo 98.6 1.4E-06 4.9E-11 64.2 14.7 101 111-213 6-106 (137)
163 2dba_A Smooth muscle cell asso 98.6 1.6E-06 5.4E-11 64.8 15.1 113 253-370 27-143 (148)
164 4gcn_A Protein STI-1; structur 98.6 1.2E-06 4E-11 63.8 13.8 96 151-247 10-111 (127)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.6E-11 66.7 14.6 100 113-214 10-109 (164)
166 1elr_A TPR2A-domain of HOP; HO 98.6 1.8E-07 6.1E-12 68.3 8.8 94 48-142 7-107 (131)
167 2dba_A Smooth muscle cell asso 98.6 5.5E-07 1.9E-11 67.3 11.6 112 44-158 27-142 (148)
168 4b4t_Q 26S proteasome regulato 98.6 4.6E-06 1.6E-10 74.9 19.5 197 121-317 11-244 (434)
169 2xev_A YBGF; tetratricopeptide 98.6 5.2E-07 1.8E-11 65.8 10.9 92 51-143 8-105 (129)
170 4b4t_Q 26S proteasome regulato 98.6 1.8E-06 6.1E-11 77.6 16.6 198 15-212 7-244 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.6 6.6E-07 2.2E-11 65.2 11.4 97 115-212 5-107 (131)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5.1E-08 1.7E-12 88.1 6.4 139 27-168 249-404 (457)
173 3q49_B STIP1 homology and U bo 98.6 9.1E-07 3.1E-11 65.2 11.9 96 81-177 10-105 (137)
174 1hxi_A PEX5, peroxisome target 98.6 5.3E-07 1.8E-11 65.0 10.1 88 88-176 25-112 (121)
175 1hxi_A PEX5, peroxisome target 98.6 3.6E-07 1.2E-11 65.9 9.0 97 46-143 18-114 (121)
176 3sz7_A HSC70 cochaperone (SGT) 98.6 3.2E-06 1.1E-10 64.6 14.9 100 148-249 10-109 (164)
177 2xev_A YBGF; tetratricopeptide 98.5 2.4E-06 8.4E-11 62.1 13.2 92 86-178 8-105 (129)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.2E-07 7.5E-12 84.0 7.6 158 94-274 248-405 (457)
179 1wao_1 Serine/threonine protei 98.4 1.4E-07 4.9E-12 85.6 5.2 125 47-173 8-134 (477)
180 3ro3_A PINS homolog, G-protein 98.4 5.3E-06 1.8E-10 62.8 13.2 131 116-246 11-156 (164)
181 3ro3_A PINS homolog, G-protein 98.4 7E-06 2.4E-10 62.1 13.2 97 150-246 10-116 (164)
182 1dce_A Protein (RAB geranylger 98.4 4.7E-05 1.6E-09 70.4 20.4 171 200-376 45-242 (567)
183 3k9i_A BH0479 protein; putativ 98.4 1.5E-06 5.3E-11 62.1 8.3 85 93-178 3-90 (117)
184 1wao_1 Serine/threonine protei 98.4 9.5E-07 3.2E-11 80.2 8.8 122 85-208 11-134 (477)
185 3rkv_A Putative peptidylprolyl 98.4 1.2E-05 4E-10 61.2 13.4 98 115-213 12-126 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.3 2.9E-06 9.8E-11 74.3 10.9 136 48-204 226-361 (370)
187 3rkv_A Putative peptidylprolyl 98.3 4E-06 1.4E-10 63.9 10.2 115 46-178 12-126 (162)
188 3k9i_A BH0479 protein; putativ 98.3 2.7E-06 9.2E-11 60.8 8.6 92 267-361 3-96 (117)
189 1ihg_A Cyclophilin 40; ppiase 98.3 9.9E-06 3.4E-10 70.8 13.4 97 115-212 224-335 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 2E-06 6.9E-11 74.3 7.7 97 116-214 232-329 (338)
191 1dce_A Protein (RAB geranylger 98.2 9.3E-05 3.2E-09 68.5 18.8 170 97-270 46-242 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 5.6E-06 1.9E-10 71.5 9.9 149 114-283 179-328 (338)
193 2hr2_A Hypothetical protein; a 98.2 3.4E-05 1.2E-09 57.4 12.1 96 117-212 14-130 (159)
194 2hr2_A Hypothetical protein; a 98.2 2.1E-05 7.3E-10 58.4 10.4 63 115-178 58-131 (159)
195 1na3_A Designed protein CTPR2; 98.1 4.4E-05 1.5E-09 51.2 11.3 83 289-374 9-91 (91)
196 1klx_A Cysteine rich protein B 98.1 6.4E-05 2.2E-09 55.3 12.7 16 60-75 10-25 (138)
197 2kat_A Uncharacterized protein 98.1 4.7E-05 1.6E-09 53.9 11.2 80 97-177 2-81 (115)
198 1klx_A Cysteine rich protein B 98.1 0.00019 6.6E-09 52.7 14.0 76 129-212 10-89 (138)
199 2l6j_A TPR repeat-containing p 98.0 6.6E-05 2.3E-09 52.5 10.8 86 288-376 3-94 (111)
200 2kat_A Uncharacterized protein 98.0 6.6E-05 2.3E-09 53.1 10.5 82 131-214 2-83 (115)
201 1zu2_A Mitochondrial import re 98.0 1.6E-05 5.3E-10 59.1 6.8 105 23-154 13-129 (158)
202 2l6j_A TPR repeat-containing p 98.0 1.6E-05 5.4E-10 55.8 6.4 52 90-141 14-65 (111)
203 3n71_A Histone lysine methyltr 98.0 2.2E-05 7.6E-10 70.9 8.6 122 126-247 321-463 (490)
204 3n71_A Histone lysine methyltr 97.9 8.4E-05 2.9E-09 67.1 12.2 128 156-283 316-464 (490)
205 1na3_A Designed protein CTPR2; 97.9 6.5E-05 2.2E-09 50.4 8.6 61 116-177 11-71 (91)
206 1zu2_A Mitochondrial import re 97.9 3.4E-05 1.2E-09 57.2 7.2 91 94-187 16-127 (158)
207 3ma5_A Tetratricopeptide repea 97.8 0.00033 1.1E-08 48.0 10.1 63 149-212 7-69 (100)
208 3ly7_A Transcriptional activat 97.7 0.0011 3.9E-08 56.5 14.2 65 146-212 274-338 (372)
209 3ma5_A Tetratricopeptide repea 97.7 0.00029 1E-08 48.3 9.0 66 111-177 4-69 (100)
210 3ly7_A Transcriptional activat 97.7 0.0012 4E-08 56.4 13.6 140 43-188 192-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.3 0.0035 1.2E-07 42.5 10.4 60 298-360 9-69 (99)
212 3u64_A Protein TP_0956; tetrat 97.3 0.035 1.2E-06 45.5 17.4 91 201-293 180-281 (301)
213 2kc7_A BFR218_protein; tetratr 97.3 0.0011 3.7E-08 45.1 7.5 60 16-75 4-65 (99)
214 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0091 3.1E-07 41.0 10.8 77 288-364 4-84 (104)
215 3mkq_A Coatomer beta'-subunit; 97.1 0.0082 2.8E-07 58.4 14.2 151 23-209 610-761 (814)
216 3qww_A SET and MYND domain-con 97.1 0.0017 5.8E-08 57.7 8.4 84 163-246 312-409 (433)
217 3qwp_A SET and MYND domain-con 97.0 0.0042 1.4E-07 55.2 10.5 88 159-246 297-398 (429)
218 3u64_A Protein TP_0956; tetrat 97.0 0.036 1.2E-06 45.5 14.8 91 130-222 179-280 (301)
219 3qww_A SET and MYND domain-con 97.0 0.0013 4.5E-08 58.4 6.7 86 128-213 312-411 (433)
220 1pc2_A Mitochondria fission pr 96.9 0.016 5.5E-07 42.5 11.1 90 269-362 13-107 (152)
221 3bee_A Putative YFRE protein; 96.9 0.0069 2.4E-07 40.6 8.5 48 96-143 25-72 (93)
222 3qwp_A SET and MYND domain-con 96.9 0.0024 8.2E-08 56.8 7.9 89 125-213 298-400 (429)
223 3bee_A Putative YFRE protein; 96.9 0.011 3.6E-07 39.7 9.1 65 148-213 5-72 (93)
224 4h7y_A Dual specificity protei 96.8 0.027 9.2E-07 40.8 11.0 117 253-373 12-141 (161)
225 3mkq_A Coatomer beta'-subunit; 96.8 0.084 2.9E-06 51.3 18.5 129 153-314 633-761 (814)
226 1pc2_A Mitochondria fission pr 96.7 0.029 9.8E-07 41.2 10.8 82 130-213 14-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.5 0.042 1.4E-06 37.6 10.5 62 116-177 7-74 (104)
228 4h7y_A Dual specificity protei 96.4 0.052 1.8E-06 39.3 10.1 100 44-144 12-124 (161)
229 4ady_A RPN2, 26S proteasome re 96.2 0.63 2.1E-05 45.2 19.5 272 122-404 382-673 (963)
230 3lvg_A Clathrin heavy chain 1; 96.2 3.8E-05 1.3E-09 67.0 -8.2 245 44-309 53-324 (624)
231 1nzn_A CGI-135 protein, fissio 96.1 0.12 4.1E-06 36.4 10.8 92 266-361 13-109 (126)
232 1wy6_A Hypothetical protein ST 96.0 0.25 8.4E-06 35.1 14.2 141 195-359 18-158 (172)
233 1qsa_A Protein (soluble lytic 95.7 1.4 4.7E-05 41.0 27.2 319 13-354 7-347 (618)
234 2ff4_A Probable regulatory pro 95.6 0.24 8E-06 43.3 13.3 76 329-404 174-256 (388)
235 3mkq_B Coatomer subunit alpha; 95.6 0.52 1.8E-05 35.5 16.3 101 193-314 14-114 (177)
236 3mkq_B Coatomer subunit alpha; 95.6 0.52 1.8E-05 35.5 16.6 102 157-279 13-114 (177)
237 1wy6_A Hypothetical protein ST 95.5 0.43 1.5E-05 33.9 15.2 61 153-214 95-155 (172)
238 1nzn_A CGI-135 protein, fissio 95.4 0.15 5.2E-06 35.9 8.9 79 132-212 19-102 (126)
239 4ady_A RPN2, 26S proteasome re 95.3 2.4 8.1E-05 41.3 22.7 313 53-375 382-721 (963)
240 3lvg_A Clathrin heavy chain 1; 94.8 0.00023 7.8E-09 62.2 -8.1 246 79-346 53-324 (624)
241 4fhn_B Nucleoporin NUP120; pro 94.4 1.8 6.1E-05 43.9 17.3 150 116-267 901-1079(1139)
242 4gns_B Protein CSD3, chitin bi 94.1 0.62 2.1E-05 44.2 12.2 125 49-176 252-398 (754)
243 4b4t_P 26S proteasome regulato 93.9 3.3 0.00011 36.9 19.7 243 127-374 29-307 (445)
244 1v54_E Cytochrome C oxidase po 93.8 0.91 3.1E-05 30.2 9.3 59 307-367 28-86 (109)
245 4fhn_B Nucleoporin NUP120; pro 93.7 1.4 4.8E-05 44.6 15.0 191 84-281 816-1048(1139)
246 2ff4_A Probable regulatory pro 93.6 0.22 7.7E-06 43.5 7.9 72 116-188 173-249 (388)
247 4gns_B Protein CSD3, chitin bi 93.5 1 3.5E-05 42.8 12.6 49 325-374 612-660 (754)
248 3ffl_A Anaphase-promoting comp 92.9 1.1 3.8E-05 33.1 9.3 27 150-176 123-149 (167)
249 1v54_E Cytochrome C oxidase po 92.7 0.85 2.9E-05 30.4 7.5 49 269-317 25-73 (109)
250 4b4t_P 26S proteasome regulato 92.1 6.1 0.00021 35.1 24.1 189 94-282 30-246 (445)
251 2y69_E Cytochrome C oxidase su 92.0 2.3 7.9E-05 30.1 9.3 60 307-368 71-130 (152)
252 3o48_A Mitochondria fission 1 92.0 2.4 8.1E-05 30.0 10.7 73 286-360 37-112 (134)
253 3ffl_A Anaphase-promoting comp 91.4 1.3 4.3E-05 32.9 8.1 117 15-143 23-151 (167)
254 1qsa_A Protein (soluble lytic 91.0 10 0.00034 35.4 34.9 306 21-349 81-436 (618)
255 3o48_A Mitochondria fission 1 90.6 2.9 0.0001 29.6 9.0 24 294-317 83-106 (134)
256 2y69_E Cytochrome C oxidase su 90.2 2.4 8.2E-05 30.0 8.1 61 270-333 69-129 (152)
257 2wpv_A GET4, UPF0363 protein Y 90.2 7.3 0.00025 32.5 19.8 81 252-353 132-215 (312)
258 4b4t_R RPN7, 26S proteasome re 88.9 6.5 0.00022 34.7 12.3 60 82-141 133-195 (429)
259 2p58_C Putative type III secre 87.0 3 0.0001 27.6 6.5 50 90-144 50-99 (116)
260 1y8m_A FIS1; mitochondria, unk 86.5 7.2 0.00025 28.0 12.8 73 286-360 36-111 (144)
261 4b4t_R RPN7, 26S proteasome re 85.0 15 0.00051 32.4 12.4 61 151-211 133-195 (429)
262 1zbp_A Hypothetical protein VP 84.9 5.5 0.00019 32.2 8.5 54 263-317 6-59 (273)
263 2uwj_G Type III export protein 84.3 2.9 9.8E-05 27.7 5.4 50 90-144 49-98 (115)
264 1wdy_A 2-5A-dependent ribonucl 82.0 9.6 0.00033 30.9 9.6 55 20-79 10-66 (285)
265 3lpz_A GET4 (YOR164C homolog); 82.0 22 0.00076 29.9 21.4 165 153-353 39-214 (336)
266 2p58_C Putative type III secre 81.1 9.8 0.00034 25.3 7.0 52 122-179 48-99 (116)
267 1zbp_A Hypothetical protein VP 81.0 7.4 0.00025 31.5 7.8 52 125-177 8-59 (273)
268 1y8m_A FIS1; mitochondria, unk 80.6 14 0.00046 26.6 12.2 67 146-212 36-105 (144)
269 2uwj_G Type III export protein 78.9 9.2 0.00032 25.4 6.3 51 123-179 48-98 (115)
270 3txn_A 26S proteasome regulato 75.6 40 0.0014 29.3 24.3 92 154-245 104-207 (394)
271 2wpv_A GET4, UPF0363 protein Y 75.1 35 0.0012 28.4 18.7 127 172-317 80-216 (312)
272 3txn_A 26S proteasome regulato 74.6 42 0.0014 29.1 23.5 232 116-353 21-282 (394)
273 2zu6_B Programmed cell death p 74.4 35 0.0012 28.4 10.5 66 292-360 169-236 (307)
274 3esl_A Checkpoint serine/threo 74.3 27 0.00093 26.8 9.7 53 165-217 95-148 (202)
275 3esl_A Checkpoint serine/threo 72.3 31 0.0011 26.5 10.6 57 127-183 92-149 (202)
276 2ijq_A Hypothetical protein; s 72.3 17 0.00058 26.8 7.1 60 14-73 34-103 (161)
277 4b4t_S RPN3, 26S proteasome re 72.1 38 0.0013 30.5 10.6 61 81-143 232-299 (523)
278 4a1g_A Mitotic checkpoint seri 71.7 26 0.0009 25.5 8.1 51 133-183 84-135 (152)
279 1wdy_A 2-5A-dependent ribonucl 68.7 17 0.00056 29.4 7.5 23 266-288 191-213 (285)
280 3lpz_A GET4 (YOR164C homolog); 68.5 53 0.0018 27.7 20.8 139 185-345 36-186 (336)
281 2xig_A Ferric uptake regulatio 68.3 31 0.0011 25.0 8.0 57 350-406 16-75 (150)
282 2d2s_A Exocyst complex compone 67.8 43 0.0015 26.5 9.2 29 148-176 90-118 (235)
283 3kea_A K1L; tropism, ANK repea 66.9 18 0.0006 29.6 7.3 145 156-314 35-183 (285)
284 3eu9_A Huntingtin-interacting 66.6 8.9 0.0003 30.1 5.3 10 56-65 17-26 (240)
285 2r9g_A AAA ATPase, central reg 64.2 46 0.0016 25.4 8.8 37 196-233 26-62 (204)
286 2fe3_A Peroxide operon regulat 64.0 36 0.0012 24.5 7.6 57 350-406 11-70 (145)
287 2wvi_A Mitotic checkpoint seri 63.5 29 0.001 25.6 6.9 52 133-184 79-131 (164)
288 3eu9_A Huntingtin-interacting 63.3 21 0.00072 27.8 7.0 47 21-68 15-62 (240)
289 4b4t_S RPN3, 26S proteasome re 63.3 43 0.0015 30.2 9.1 67 45-114 231-304 (523)
290 3bu8_A Telomeric repeat-bindin 63.2 51 0.0017 25.6 11.4 20 123-142 123-142 (235)
291 3ubw_A 14-3-3E, 14-3-3 protein 62.9 58 0.002 26.2 12.5 50 305-354 172-227 (261)
292 3kea_A K1L; tropism, ANK repea 62.4 62 0.0021 26.3 11.1 16 53-68 36-51 (285)
293 2npm_A 14-3-3 domain containin 60.2 66 0.0023 25.9 12.2 51 305-355 172-227 (260)
294 1mzb_A Ferric uptake regulatio 59.7 27 0.00094 24.7 6.2 55 352-406 9-67 (136)
295 3hra_A Ankyrin repeat family p 59.5 28 0.00094 26.3 6.8 54 21-79 11-66 (201)
296 3jxi_A Vanilloid receptor-rela 59.4 13 0.00044 29.8 5.0 52 54-105 11-71 (260)
297 3eyy_A Putative iron uptake re 58.5 26 0.00088 25.3 5.9 56 351-406 9-66 (145)
298 1n11_A Ankyrin; clathrin, BAND 58.4 93 0.0032 27.1 11.6 205 21-243 20-233 (437)
299 2br9_A 14-3-3E, 14-3-3 protein 58.4 67 0.0023 25.4 10.5 50 305-354 146-201 (234)
300 3uzd_A 14-3-3 protein gamma; s 57.9 70 0.0024 25.5 12.3 50 305-354 147-202 (248)
301 3iqu_A 14-3-3 protein sigma; s 57.4 70 0.0024 25.3 11.9 59 189-247 13-72 (236)
302 4ets_A Ferric uptake regulatio 56.7 40 0.0014 24.8 6.8 55 352-406 24-83 (162)
303 2ijq_A Hypothetical protein; s 56.1 58 0.002 24.0 7.4 53 266-318 44-104 (161)
304 2w57_A Ferric uptake regulatio 55.7 35 0.0012 24.7 6.3 56 351-406 7-66 (150)
305 3ctd_A Putative ATPase, AAA fa 55.1 67 0.0023 24.8 7.7 35 197-231 48-82 (213)
306 4a1g_A Mitotic checkpoint seri 55.1 58 0.002 23.7 10.4 50 168-217 84-134 (152)
307 1k1a_A B-cell lymphoma 3-encod 54.9 51 0.0017 25.6 7.9 27 156-182 13-39 (241)
308 2xig_A Ferric uptake regulatio 54.7 46 0.0016 24.0 6.8 61 174-235 17-77 (150)
309 3bqo_A Telomeric repeat-bindin 54.4 70 0.0024 24.4 7.8 18 123-140 126-143 (211)
310 2fe3_A Peroxide operon regulat 53.8 47 0.0016 23.8 6.7 59 175-234 13-71 (145)
311 1mzb_A Ferric uptake regulatio 53.7 48 0.0016 23.5 6.6 60 175-235 9-69 (136)
312 1bpo_A Protein (clathrin); cla 53.4 1.2E+02 0.0042 26.9 10.0 112 58-173 342-453 (494)
313 1k1a_A B-cell lymphoma 3-encod 53.2 35 0.0012 26.6 6.6 24 122-145 14-37 (241)
314 3mwm_A ZUR, putative metal upt 53.2 20 0.0007 25.6 4.6 54 353-406 6-62 (139)
315 3bge_A Predicted ATPase; struc 52.1 55 0.0019 25.0 6.7 100 183-282 3-110 (201)
316 1o9d_A 14-3-3-like protein C; 51.8 93 0.0032 25.1 11.0 50 305-354 151-206 (260)
317 4gq2_M Nucleoporin NUP120; bet 51.4 1.8E+02 0.0061 28.8 12.3 107 260-374 816-950 (950)
318 4aez_C MAD3, mitotic spindle c 51.3 46 0.0016 26.1 6.5 84 98-184 95-185 (223)
319 1ug3_A EIF4GI, eukaryotic prot 51.3 1.1E+02 0.0038 25.8 11.0 25 83-107 14-38 (339)
320 2w57_A Ferric uptake regulatio 50.0 49 0.0017 23.9 6.3 61 174-235 7-68 (150)
321 3pvs_A Replication-associated 49.6 1.4E+02 0.0047 26.4 12.4 29 147-177 192-220 (447)
322 3jxi_A Vanilloid receptor-rela 49.2 19 0.00065 28.7 4.5 21 124-144 12-32 (260)
323 2ion_A PDCD4, programmed cell 48.4 76 0.0026 23.1 7.1 20 87-106 16-35 (152)
324 3eiq_C Programmed cell death p 48.4 1.3E+02 0.0044 25.7 13.5 77 292-371 220-299 (358)
325 3ltm_A Alpha-REP4; protein eng 47.0 92 0.0031 23.6 17.1 111 43-164 31-141 (211)
326 4ets_A Ferric uptake regulatio 46.2 85 0.0029 23.0 7.8 61 175-236 24-86 (162)
327 2wvi_A Mitotic checkpoint seri 46.1 87 0.003 23.1 10.1 50 168-217 79-129 (164)
328 3hra_A Ankyrin repeat family p 45.8 50 0.0017 24.8 6.2 15 274-288 158-172 (201)
329 4aez_C MAD3, mitotic spindle c 45.8 1.1E+02 0.0036 24.0 8.8 52 166-217 131-183 (223)
330 3eyy_A Putative iron uptake re 44.5 46 0.0016 23.9 5.4 58 175-234 10-67 (145)
331 3mv2_A Coatomer subunit alpha; 44.4 1.4E+02 0.0048 25.0 13.5 132 15-178 117-256 (325)
332 3bqo_A Telomeric repeat-bindin 41.8 1.1E+02 0.0038 23.4 6.9 47 28-74 94-146 (211)
333 2zu6_B Programmed cell death p 41.6 1.5E+02 0.0052 24.6 10.3 60 257-317 169-230 (307)
334 3ygs_P Procaspase 9; apoptosis 40.7 54 0.0019 21.5 4.8 37 59-99 51-87 (97)
335 2fu4_A Ferric uptake regulatio 39.5 68 0.0023 20.0 6.3 58 175-233 8-66 (83)
336 2nsz_A Programmed cell death p 38.8 99 0.0034 21.6 8.5 20 87-106 14-33 (129)
337 3mkr_B Coatomer subunit alpha; 38.6 1.7E+02 0.0059 24.4 12.0 132 15-178 105-247 (320)
338 2f6m_A Suppressor protein STP2 38.5 64 0.0022 19.4 4.8 43 331-373 7-49 (65)
339 2etb_A Transient receptor pote 38.0 67 0.0023 25.3 6.1 54 52-106 6-69 (256)
340 2ion_A PDCD4, programmed cell 37.8 1.1E+02 0.0039 22.1 7.6 22 189-210 14-35 (152)
341 3b7b_A Euchromatic histone-lys 37.7 78 0.0027 24.4 6.4 22 261-282 214-235 (237)
342 2b7e_A PRE-mRNA processing pro 36.3 40 0.0014 19.8 3.1 29 201-229 3-31 (59)
343 3ljn_A Hypothetical protein; a 36.1 1.2E+02 0.0041 25.5 7.7 47 263-314 217-266 (364)
344 1ug3_A EIF4GI, eukaryotic prot 35.8 1.4E+02 0.0047 25.2 7.7 25 117-141 14-38 (339)
345 3eiq_C Programmed cell death p 35.5 2.1E+02 0.0071 24.4 14.0 60 257-317 220-281 (358)
346 3kae_A CDC27, possible protein 34.1 1.5E+02 0.005 22.2 13.5 38 321-358 201-240 (242)
347 3aji_A 26S proteasome non-ATPa 33.6 1.6E+02 0.0054 22.5 7.6 19 156-174 10-28 (231)
348 3t8k_A Uncharacterized protein 33.5 1.5E+02 0.0051 22.1 9.6 21 161-181 47-67 (186)
349 4gq2_M Nucleoporin NUP120; bet 33.3 3.7E+02 0.013 26.6 13.5 132 49-197 814-949 (950)
350 3mwm_A ZUR, putative metal upt 32.8 59 0.002 23.1 4.3 47 189-235 18-64 (139)
351 1bpo_A Protein (clathrin); cla 32.1 2.7E+02 0.0094 24.8 11.8 120 221-352 363-482 (494)
352 2d2s_A Exocyst complex compone 31.7 1.9E+02 0.0065 22.8 11.1 21 191-211 25-45 (235)
353 2o03_A Probable zinc uptake re 31.5 64 0.0022 22.6 4.3 45 190-234 16-60 (131)
354 2nsz_A Programmed cell death p 31.4 1.3E+02 0.0046 20.9 8.9 22 189-210 12-33 (129)
355 4g8k_A 2-5A-dependent ribonucl 31.3 2.2E+02 0.0076 23.5 11.7 56 19-79 29-86 (337)
356 3ctd_A Putative ATPase, AAA fa 31.3 1.8E+02 0.0062 22.5 9.7 33 127-159 48-80 (213)
357 2rfa_A Transient receptor pote 31.3 1.7E+02 0.006 22.3 7.9 19 196-214 163-181 (232)
358 2e2a_A Protein (enzyme IIA); h 29.7 49 0.0017 22.3 3.1 26 15-40 23-48 (105)
359 2w2u_A Hypothetical P60 katani 29.6 1.1E+02 0.0038 19.4 4.9 16 337-352 30-45 (83)
360 3pvs_A Replication-associated 29.0 3E+02 0.01 24.3 14.7 34 266-299 267-300 (447)
361 2rfa_A Transient receptor pote 28.7 1.9E+02 0.0067 22.0 9.3 25 261-285 158-182 (232)
362 1wcr_A PTS system, N, N'-diace 28.6 52 0.0018 22.0 3.1 26 15-40 21-46 (103)
363 1oai_A Nuclear RNA export fact 28.5 37 0.0013 19.9 2.1 20 341-360 35-54 (59)
364 3kae_A CDC27, possible protein 28.2 1.9E+02 0.0065 21.7 9.2 28 329-356 117-144 (242)
365 3r88_A Anthranilate phosphorib 27.3 2.9E+02 0.01 23.7 8.3 66 79-144 22-89 (377)
366 1ya0_A SMG-7 transcript varian 27.0 3.4E+02 0.012 24.4 9.0 67 93-160 165-231 (497)
367 2v6y_A AAA family ATPase, P60 26.6 1.3E+02 0.0043 19.1 4.9 16 337-352 22-37 (83)
368 2o03_A Probable zinc uptake re 26.5 1.1E+02 0.0037 21.4 4.7 46 154-199 15-60 (131)
369 2pnn_A Transient receptor pote 26.3 94 0.0032 24.8 5.1 17 91-107 21-37 (273)
370 2pnn_A Transient receptor pote 26.0 83 0.0028 25.1 4.7 61 44-105 10-79 (273)
371 3k1s_A PTS system, cellobiose- 25.6 63 0.0022 21.9 3.1 26 15-40 25-50 (109)
372 4fke_A Aminopeptidase N; zinc 25.4 4.9E+02 0.017 25.6 16.5 160 189-355 691-860 (909)
373 2keb_A DNA polymerase subunit 24.4 1.6E+02 0.0054 19.5 6.7 31 133-163 28-58 (101)
374 3l8r_A PTCA, putative PTS syst 24.3 68 0.0023 22.2 3.1 26 15-40 40-65 (120)
375 3qil_A Clathrin heavy chain 1; 23.7 65 0.0022 22.3 2.8 51 117-170 35-85 (125)
376 3t5v_B Nuclear mRNA export pro 23.3 1.2E+02 0.0041 26.9 5.3 60 221-280 178-246 (455)
377 3aji_A 26S proteasome non-ATPa 23.2 1.9E+02 0.0065 22.0 6.3 13 56-68 14-26 (231)
378 3ltm_A Alpha-REP4; protein eng 22.9 2.4E+02 0.0083 21.1 18.2 17 113-129 32-48 (211)
379 4b4t_O 26S proteasome regulato 22.8 3.7E+02 0.013 23.2 9.3 84 87-170 83-190 (393)
380 3mv2_A Coatomer subunit alpha; 22.7 3.4E+02 0.012 22.7 10.3 70 305-376 186-259 (325)
381 3lxu_X Tripeptidyl-peptidase 2 22.4 6.7E+02 0.023 26.0 10.8 36 301-340 1296-1331(1354)
382 4fke_A Aminopeptidase N; zinc 22.2 5.7E+02 0.02 25.1 16.8 40 15-55 597-638 (909)
383 2ko4_A Mediator of RNA polymer 21.9 1.6E+02 0.0053 18.5 4.0 24 34-57 25-48 (81)
384 1wgl_A TOLL-interacting protei 21.6 1.3E+02 0.0045 17.6 3.7 14 128-141 37-50 (59)
385 1ya0_A SMG-7 transcript varian 21.5 4.4E+02 0.015 23.6 10.3 75 261-339 159-233 (497)
386 1bd8_A P19INK4D CDK4/6 inhibit 21.2 1.9E+02 0.0064 20.2 5.5 47 20-68 7-55 (156)
387 2rg8_A Programmed cell death p 21.2 1.5E+02 0.0053 21.8 4.8 24 118-141 14-37 (165)
388 1vlg_A Ferritin; TM1128, struc 20.9 2.6E+02 0.0088 20.6 6.3 67 60-132 64-130 (176)
389 1bd8_A P19INK4D CDK4/6 inhibit 20.8 2.1E+02 0.0071 20.0 5.6 14 161-174 11-24 (156)
390 2rg8_A Programmed cell death p 20.7 1.9E+02 0.0064 21.3 5.2 25 153-177 14-38 (165)
391 2etb_A Transient receptor pote 20.7 1.5E+02 0.0052 23.2 5.3 24 122-145 7-30 (256)
392 3c1d_A Protein ORAA, regulator 20.6 2.5E+02 0.0085 20.4 10.0 100 234-340 45-144 (159)
393 2p22_A Suppressor protein STP2 20.5 1.4E+02 0.0047 22.3 4.3 47 289-338 111-157 (174)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-36 Score=284.54 Aligned_cols=386 Identities=13% Similarity=0.038 Sum_probs=321.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
..+..+.+.|++++|+.+|+.+....|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 3444678899999999999999877788889999999999999999999999988653 57888999999999999999
Q ss_pred CcHHHHHHHHhhcC----------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 014978 97 DKVPQMLQELKKNT----------------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL----- 155 (415)
Q Consensus 97 ~~a~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 155 (415)
++|.++|+++.... +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhc
Confidence 99999998532211 3358899999999999999999999999998874 2233333332
Q ss_pred ---------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHH
Q 014978 156 ---------------------------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 156 ---------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 202 (415)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 45566788899999999998875 5789999999999999999999
Q ss_pred HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 203 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
|.++|+++.+.++. +..++..++.++...|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999887543 67789999999999999999999999988654 55788889999999999999999999999987
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 283 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 283 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
.. +.+..+|+.++..|.+.|++++|+++|+++.+ ..+.+..++..++.+|.+.|++++|.++|+++.+..+.+..+
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 477 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 53 23577999999999999999999999999987 234577889999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCCC--cHHHHHHHHhC----CCCCC--HHHH-HHHHHhccCC-ccccccc
Q 014978 363 YNSLLRTYAKAGKM--PLIIVERMQKD----NVQMD--AETQ-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 363 ~~~l~~~~~~~g~~--a~~~~~~m~~~----~~~p~--~~t~-~~l~~~~~~~-~~~~~~~ 413 (415)
|+.++..|.+.|++ |..+++++.+. +..|+ ..++ .+...+...+ .+++.+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999998 57788888776 77887 5566 5666666666 5555443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=273.68 Aligned_cols=366 Identities=9% Similarity=-0.034 Sum_probs=243.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHh-c--------------CCCCCcc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-C--------------GFLKCPL 81 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~ 81 (415)
..+..+.+.|++++|+.+|+.+....+++.+++.++.+|.+.|++++|.++|+++.. . |.+++..
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 344455666666666666666654445666666666666666666666666663211 1 1122345
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcC---------------------------------------------------
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNT--------------------------------------------------- 110 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------------------- 110 (415)
+|+.++.+|.+.|++++|+++|+++.+..
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 56666666666666666666666654332
Q ss_pred --------------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 111 --------------------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 111 --------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
+++..+|+.++.++.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|++++|.+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666777777777777777766554 3355566667777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..+ .+..+|+.++.++.+.|++++|.++|+++.+.+
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777666542 44666777777777777777777777777776432 245677777777777777777777777777654
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc--CCCCC--H
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPD--H 326 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~--~ 326 (415)
+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+... +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3466777777777777777777777777777653 23567777777777777777777777777766211 34565 6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.+|..++.+|.+.|++++|...|+++.+.++.+..+|..+..+|.+.|++ |...++++.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777 46666666553
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-31 Score=236.46 Aligned_cols=367 Identities=17% Similarity=0.127 Sum_probs=323.0
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+..+.+.|++++|++.|+.+....| ++..+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45677899999999999999888777 45677788888999999999999999998864 55778899999999999999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|++.|+++.+..|.+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999988788888999999999999999999999999999874 4455678889999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 873 446788999999999999999999999999986543 56678899999999999999999999998875 346788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+..+...+...|++++|...|+++.+.+. .+..+|..+...+.+.|++++|...|+++++ ..+.+..++..+...+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcccHHHHHHHHHHH
Confidence 99999999999999999999999998642 2567899999999999999999999999998 3466889999999999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHH
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t 395 (415)
...|++++|...++++.+..|.+..++..+...|.+.|++ |...++++.+ ..|+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~ 374 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFAD 374 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHH
Confidence 9999999999999999998888889999999999999999 5777887776 4565443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.6e-30 Score=229.89 Aligned_cols=353 Identities=12% Similarity=0.052 Sum_probs=313.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.....+..+.+.|++++|..+++.+....| ++.+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++..
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 344556677889999999999999888766 67899999999999999999999999999864 3345679999999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.|++++|.+.|+++.+..|.+...+..+...+...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988878888899999999999999999999999999874 456789999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
+++.+.+ +.+...|..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.
T Consensus 193 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 269 (388)
T 1w3b_A 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SS
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 9999874 456788999999999999999999999999886433 56788999999999999999999999998865 33
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..++..+...+.+.|++++|...|+++.+.. +++..++..+...+.+.|++++|...++++++ ..+.+..++..+
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 345 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNL 345 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHH
Confidence 67789999999999999999999999999864 34788999999999999999999999999987 345567899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
..++.+.|++++|...|+++.+..|....+|..+...+...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999988888999999988887664
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.7e-32 Score=249.11 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCCHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL---------PEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34444445555444444455555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555554444444444445544444444444444544444444444444444444444444444
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
|++++|.+++++|.+.|..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 444444444444444444444444444444443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-32 Score=249.63 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCC---------H
Q 014978 62 AEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQND---------K 130 (415)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------~ 130 (415)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+. ++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777766554 35888999999999999999999999887 99999999999999998765 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
.+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999988643
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.1e-26 Score=208.54 Aligned_cols=332 Identities=12% Similarity=0.031 Sum_probs=273.0
Q ss_pred hHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHH
Q 014978 28 TRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (415)
...+...|..+....| ++..+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555555555545 67889999999999999999999999998864 456788899999999999999999999999
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHH
Q 014978 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW---ISYSTL------------TSLYIKMELPEKAATT 171 (415)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~ 171 (415)
.+..|.+..++..++.++.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|...
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888889999999999999999999999999999874 3333 555555 4458899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
|+++.+.. +.+...+..++.++...|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+.+.. +
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 242 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 242 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99998864 55788899999999999999999999999988754 367889999999999999999999999998764 3
Q ss_pred CCCchHHHH------------HHHHHhcCcHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 252 GDPRVPNIL------------LAAYINRNQLEMAESFYNRLVTKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 252 ~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
.+...+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445444 78899999999999999999875 344 34788889999999999999999999
Q ss_pred hHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 315 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 315 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
++.. .+.+...+..+..+|...|++++|...++++.+..|.+..++..+..+
T Consensus 321 a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 321 VLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9872 344789999999999999999999999999999988888888888744
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-26 Score=213.41 Aligned_cols=374 Identities=12% Similarity=0.038 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
..+..|..+.+.|++++|+..|+.+....|++.+|..+..++.+.|++++|++.++++.+.+ +.+..+|..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999988999999999999999999999999999999875 44567899999999999
Q ss_pred CCcCcHHHHHHHHhhcCCCC------------------------------------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPD------------------------------------------------------------ 113 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~------------------------------------------------------------ 113 (415)
|++++|...|+++.+..+++
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999987654322
Q ss_pred -------------------HhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 014978 114 -------------------VVTYNLWLAACAS---QNDKETAEKAFLELKK-----TKI--------DPDWISYSTLTSL 158 (415)
Q Consensus 114 -------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~l~~~ 158 (415)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 3333344444443 8999999999999988 311 2235578889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
+...|++++|...++++.+.. |+...+..+...+...|++++|...++++....+. +...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999874 44888999999999999999999999999886543 667888999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 318 (415)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998875 4477889999999999999999999999998753 235678899999999999999999999999873
Q ss_pred ccCCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCC
Q 014978 319 VRKWVPD----HRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNV 389 (415)
Q Consensus 319 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~ 389 (415)
... .++ ...+..+...+.. .|++++|...++++.+..+.+..++..+...|.+.|++ |...++...+.
T Consensus 402 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 478 (514)
T 2gw1_A 402 ENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-- 478 (514)
T ss_dssp HHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 211 222 3488899999999 99999999999999999988899999999999999999 56677766654
Q ss_pred CCCHHHH
Q 014978 390 QMDAETQ 396 (415)
Q Consensus 390 ~p~~~t~ 396 (415)
.|+....
T Consensus 479 ~~~~~~~ 485 (514)
T 2gw1_A 479 ARTMEEK 485 (514)
T ss_dssp CSSHHHH
T ss_pred ccccHHH
Confidence 4555443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.2e-25 Score=202.97 Aligned_cols=354 Identities=12% Similarity=0.065 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
...+..+..+.+.|++++|+..|+.+....| ++.+|..++.++...|++++|...|+++.+.+ +.+..++..+..++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3456777888999999999999999888665 67899999999999999999999999999876 446778899999999
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCH---hHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDV---VTYNLWL------------AACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (415)
+.|++++|.+.|+++.+..|.+. ..+..++ ..+...|++++|...|+++.+.. +.+..++..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999988777776 7776664 44899999999999999999874 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH-----------
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV----------- 225 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 225 (415)
.+|.+.|++++|.+.|+++.+.. +.+..+|..++..+...|++++|+..|+++.+..+. +...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 567889999999999999999999999999875432 33344444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 226 -ISSLVKLGEFEKAENIYDEWESISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 226 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
...+...|++++|...++.+.+..+. + ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 78899999999999999999886422 2 3467888999999999999999999998753 236789999999999
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCC-CHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHcCCC---
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK------------LEEQG-----DIDGAEHLLVT-LRNAGHV--- 358 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~--- 358 (415)
..|++++|...++++++ ..| +...+..+..+ |...| +.+++.+.+++ ..+..|.
T Consensus 341 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQE----HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HTTCHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999987 344 45566665533 33334 55677777776 4444443
Q ss_pred C-------HHHHHHHHHHHHhcCCC
Q 014978 359 S-------TEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 359 ~-------~~~~~~l~~~~~~~g~~ 376 (415)
+ ...+..+..+|...++.
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCH
Confidence 1 12577777777777765
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5e-24 Score=198.47 Aligned_cols=368 Identities=12% Similarity=0.045 Sum_probs=296.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..|..+.+.|++++|++.|+.+....| ++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 357778889999999999999999988876 67899999999999999999999999999875 4567788889999999
Q ss_pred cCCcCcHHHHHHHHhhcCC-------------------------------------CCHh--------------------
Q 014978 93 NGQLDKVPQMLQELKKNTS-------------------------------------PDVV-------------------- 115 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~-------------------------------------~~~~-------------------- 115 (415)
.|++++|...|+.+..... |+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999964421100 0000
Q ss_pred ----------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 014978 116 ----------TYNLWLAACA--------SQNDKETAEKAFLELKKTKIDPD-------WISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 116 ----------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1111221111 1247899999999998763 222 2356777888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
.++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 99999986 466888999999999999999999999999887543 67789999999999999999999999998875
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC---CCCHH
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW---VPDHR 327 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~p~~~ 327 (415)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++..... .....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 4467889999999999999999999999998864 2356788999999999999999999999988742111 11223
Q ss_pred HHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCC
Q 014978 328 LITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 328 ~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~ 388 (415)
.+..+...+... |++++|...|+++.+..+.+..++..+...|.+.|++ |...++...+..
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345556677777 9999999999999999999999999999999999999 577777776654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=5.4e-23 Score=181.15 Aligned_cols=318 Identities=11% Similarity=0.015 Sum_probs=213.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..|.+...+..+..++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555555556666666666666555543 2334455555555666666666666666655554555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKID---PDWISYSTL------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
..|++++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 6666666666666665542 1 122333333 466777777777777777777653 4456667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH------------
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN------------ 258 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------ 258 (415)
...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776543 255667777777777777777777777777653 22333322
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 2366688889999999999988875322 22 23445778888999999999999999872 3447788889999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
.+...|++++|...|+++.+..|.+..++..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999888888888777776554
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-24 Score=199.01 Aligned_cols=356 Identities=11% Similarity=0.014 Sum_probs=292.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+..|.+..+|..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778899999999999999999999876 78899999999999999999999999999988888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---------------------------------------------------------
Q 014978 125 ASQNDKETAEKAFLELKKTKIDP--------------------------------------------------------- 147 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~--------------------------------------------------------- 147 (415)
.+.|++++|...|+++.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998764210
Q ss_pred ---------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCCHHHHHHH
Q 014978 148 ---------------------DWISYSTLTSLYIK---MELPEKAATTLKEMEK-----RTC--------RKNRVAYSSL 190 (415)
Q Consensus 148 ---------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 190 (415)
+...+......+.. .|++++|...++++.+ ... +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12233334444443 8999999999999987 311 2235678888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
...+...|++++|...++++.+..+. ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999986543 7788899999999999999999999998875 44778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
++|...++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998643 25678889999999999999999999999882 34466888999999999999999999999
Q ss_pred HHHHcCCCC------HHHHHHHHHHHHh---cCCC--cHHHHHHHHhCCCCCC-HHHH-HHHHHhccCC-ccccc
Q 014978 351 TLRNAGHVS------TEIYNSLLRTYAK---AGKM--PLIIVERMQKDNVQMD-AETQ-KVLKITSEMP-VSEVS 411 (415)
Q Consensus 351 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~--a~~~~~~m~~~~~~p~-~~t~-~~l~~~~~~~-~~~~~ 411 (415)
++.+..+.+ ...|..+...+.. .|++ |...++...... |+ ..++ .+-..+...+ .+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHH
Confidence 998876654 3489999999999 9988 577777776643 43 3333 4444444444 34443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.1e-22 Score=177.35 Aligned_cols=313 Identities=13% Similarity=0.080 Sum_probs=263.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
.+..+..+...|++++|+..|+.+....| ++.++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 56778889999999999999999988766 57899999999999999999999999999875 34667888999999999
Q ss_pred CCcCcHHHHHHHHhhcCC---CCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTS---PDVVTYNLW------------LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
|++++|...|+++.+..| .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 999999999999988766 667777666 688999999999999999999874 5677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH------------HHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT------------CVI 226 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 226 (415)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+. +...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 567888999999999999999999999999886433 333332 236
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDP----RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 302 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 302 (415)
..+...|++++|...++.+.+..+. +. ..+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 6788999999999999999886422 33 234567889999999999999999998863 23678999999999999
Q ss_pred CCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLE 337 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 337 (415)
|++++|...|+++++ ..|+ ...+..+..+..
T Consensus 320 g~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQE----HNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHH
Confidence 999999999999987 3454 555665555543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.7e-22 Score=174.62 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=161.9
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
.++..+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+..|.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 355666666666666677777777777666553 3344555556666666666666766666666655666666666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH
Q 014978 123 ACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201 (415)
Q Consensus 123 ~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (415)
.+...| ++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666553 3345556666666666666666666666666542 223444555666666666666
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
+|...++++.+..+. +...+..+...+...|++++|...++++.+.......
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 228 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------- 228 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence 666666666554322 3445555555556666666666666555443210000
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 282 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
......+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..+.+..
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 0000112234444445555555555555555554441 1223344445555555555555555555555555444444
Q ss_pred HHHHHHHHH
Q 014978 362 IYNSLLRTY 370 (415)
Q Consensus 362 ~~~~l~~~~ 370 (415)
.+..+..++
T Consensus 306 ~~~~l~~~~ 314 (330)
T 3hym_B 306 SVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-21 Score=169.27 Aligned_cols=286 Identities=8% Similarity=-0.009 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+..+...|++++|+++|+.+....| +..++..++..+...|++++|..+++++.+.. +.+...|..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 345667778888999999999999988766 56778888999999999999999999999875 4567889999999999
Q ss_pred cC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014978 93 NG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 171 (415)
Q Consensus 93 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (415)
.| ++++|...|++..+..|.+...|..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|.+.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99 99999999999998888889999999999999999999999999999874 44567788899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccc--------ccChhhHHHHHHHHHhcCChHHHHHHHH
Q 014978 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA--------KMNDAEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
++++.+.. +.+...+..+...+...|++++|...++++.+... +....++..+...+...|++++|...++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999874 55778899999999999999999999999987531 2234567777777888888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH-HhcCC
Q 014978 244 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY-LKKGQ 304 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~ 304 (415)
++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..++ ...|+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 777664 33666777777777777777777777777766431 2455555665555 33444
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.2e-21 Score=180.64 Aligned_cols=340 Identities=13% Similarity=0.008 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----------
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---------- 81 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 81 (415)
...+..+..+.+.|++++|++.|+.+....| ++.++..+..++...|++++|...|+.+ ... |+..
T Consensus 60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GDFDGASIEPMLER 136 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CCCChHHHHHHHHH
Confidence 3456778888999999999999999988766 5788999999999999999999999643 211 1110
Q ss_pred -----------------------------------------------------------cHHHHHHHHHh--------cC
Q 014978 82 -----------------------------------------------------------PYNHMLNLYIS--------NG 94 (415)
Q Consensus 82 -----------------------------------------------------------~~~~l~~~~~~--------~~ 94 (415)
....+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11111111111 14
Q ss_pred CcCcHHHHHHHHhhcCCCCHh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVV-------TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
++++|..+|+++.+..|.+.. ++..+...+...|++++|...++++.+. .|+...+..+...+...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 788999999998887666644 4677778889999999999999999987 4668889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998874 456888999999999999999999999999987543 567888899999999999999999999988
Q ss_pred ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-----CCHhHHHHHHHHHHhc----------CCHHHHHHHH
Q 014978 248 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTWELLTWGYLKK----------GQMEKVLECF 312 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------~~~~~a~~~~ 312 (415)
.. +.+...+..+...+...|++++|...++++.+.... .....+......+... |++++|...|
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 75 446779999999999999999999999998764211 1112244555677777 9999999999
Q ss_pred HHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 313 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
+++.+. .+.+...+..+...+...|++++|...|+++.+..+.+....
T Consensus 452 ~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999882 345678899999999999999999999999999988865443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.3e-21 Score=173.21 Aligned_cols=313 Identities=14% Similarity=0.040 Sum_probs=164.3
Q ss_pred hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHH-HHHHHHhcCCC-C--CcccHHHHHHHHHhcCCcCcHH
Q 014978 25 ALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA-LMEKMSECGFL-K--CPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+.++.+...|+.+....|+ ++.-.|++++|.+ .+++....... | +...+..+...+.+.|++++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 84 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84 (368)
T ss_dssp -----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555443322 2233467777777 66655433210 1 2455667777777788888888
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
..|+++.+..|.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++|.+.++++....
T Consensus 85 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88887777667777777777788888888888888887777664 4466677777777777888888888887777653
Q ss_pred CCCHHHHHH---------------HHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 181 RKNRVAYSS---------------LLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 181 ~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
+.+...+.. .+..+...|++++|...++++.+..+.. +..++..+...+...|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222211 1222225556666666666655543221 244555555556666666666666665
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC--
Q 014978 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-- 322 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 322 (415)
+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|++++......
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 55543 2244455555566666666666666666555432 1234455555556666666666666665555421111
Q ss_pred ------CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 323 ------VPDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 323 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
+....+|..+..++...|++++|..+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0014555555555666666666555544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3e-21 Score=170.76 Aligned_cols=291 Identities=10% Similarity=-0.011 Sum_probs=236.3
Q ss_pred HHHhhhhHHHHH-HHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 22 QAQALQTRAREN-FFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 22 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
+.-.|++++|++ .|+.+....| +...+..+...+...|++++|...|+++.+.. +.+..+|..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445689999999 9987776543 35678899999999999999999999999875 4567788999999999999
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST---------------LTSLYI 160 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~~ 160 (415)
+++|...|+++.+..|.+..++..++.++...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999988888899999999999999999999999999999874 222222221 233344
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
..|++++|...++++.+.. +. +..++..+...+...|++++|+..++++....+. +..++..+...+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999874 22 5788999999999999999999999999886432 567899999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC----------CHhHHHHHHHHHHhcCCHHHH
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP----------CYTTWELLTWGYLKKGQMEKV 308 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a 308 (415)
...++++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998875 4467889999999999999999999999987642211 157899999999999999999
Q ss_pred HHHHHHhHh
Q 014978 309 LECFKKAIG 317 (415)
Q Consensus 309 ~~~~~~~~~ 317 (415)
..++++.++
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 998876554
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=4.9e-21 Score=169.27 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=167.7
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+...+..+...+.+.|++++|+..|+++.+..|.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344466666666666666666666666665556666666666666666666666666666666553 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKN-----------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVI 226 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 226 (415)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..+.. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 666666666666666666542 11 1222334666777777777777777777653321 455677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+... .+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 77777777777777777776654 33566777777777777777777777777776431 24667777777777777777
Q ss_pred HHHHHHHHhHhcccCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWV---------PDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+|...|+++++...... .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777766321111 0246677777777777877777776654
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.6e-18 Score=155.11 Aligned_cols=348 Identities=14% Similarity=0.071 Sum_probs=291.2
Q ss_pred HHHHHHHHHH----hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 15 SYRQRVAQAQ----ALQTRARENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 15 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
.+..+..+.. .+++++|++.|+.+.+. .++.++..|...|.. .+++++|.+.|++..+.| ++..+..+
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 117 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNL 117 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4555666666 78999999999998775 467888899999998 999999999999998875 55677778
Q ss_pred HHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 87 LNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 87 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++..+.| +...+..+...
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 888888 78999999999998764 567888889998887 889999999999999875 67788889999
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...+.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 988 899999999999998865 56677788888876 789999999999998764 4456667777777
Q ss_pred h----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 231 K----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 231 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
. .++.++|...|++..+.+ +...+..+...|... ++.++|..+|++..+.+ +...+..+...|..
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 7 899999999999988764 556777888888887 89999999999999875 55677888888887
Q ss_pred cC---CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--
Q 014978 302 KG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-- 372 (415)
Q Consensus 302 ~~---~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 372 (415)
.| ++++|+++|+++.+ . .+...+..+...|.. .+++++|...|++..+.+ ++..+..|...|.+
T Consensus 341 ~g~~~~~~~A~~~~~~a~~--~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAA--K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred CCCcccHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 66 78999999999988 2 467888899999988 899999999999999875 57788899999988
Q ss_pred --cCCC--cHHHHHHHHhCCCC
Q 014978 373 --AGKM--PLIIVERMQKDNVQ 390 (415)
Q Consensus 373 --~g~~--a~~~~~~m~~~~~~ 390 (415)
.+++ |...++.-.+.+..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCC
Confidence 6777 57777777776644
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.8e-20 Score=165.62 Aligned_cols=260 Identities=15% Similarity=0.037 Sum_probs=214.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
..+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3456679999999999999999999999999874 5678899999999999999999999999999874 4568889999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhh----------HHHHHHHHHhcCChHHHHHHHHHHHhccCCC-CCchHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI 259 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 259 (415)
..++...|++++|+..++++.+..+. +... +..+...+...|++++|...++++.+..+.. +..++..
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999886432 1222 3345788899999999999999998875321 5778999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++++. .+.+..++..+..+|...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHC
Confidence 9999999999999999999998864 236789999999999999999999999999882 344588899999999999
Q ss_pred CChhHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHhcCCCc
Q 014978 340 GDIDGAEHLLVTLRNAGHV------------STEIYNSLLRTYAKAGKMP 377 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~a 377 (415)
|++++|...|+++.+..+. ...+|..+..++...|+.+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999886544 2578999999999999873
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=4.2e-20 Score=160.51 Aligned_cols=233 Identities=13% Similarity=0.040 Sum_probs=121.4
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+..|.+..++..+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556666777777777777777777776653 33555666666777777777777777777666666666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTL--------------TS-LYIKMELPEKAATTLKEMEKRTCRKNRVAYS 188 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (415)
+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 777777777777777776653 1122222222 11 2334444445555444444432 22344444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
.+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 444444444444444444444444321 123334444444444444444444444444332 123333444444444444
Q ss_pred cHHHHHHHHHHHH
Q 014978 269 QLEMAESFYNRLV 281 (415)
Q Consensus 269 ~~~~a~~~~~~~~ 281 (415)
++++|.+.++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444443
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=2.5e-20 Score=161.86 Aligned_cols=263 Identities=10% Similarity=0.009 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+..+...|++++|+..|+.+....| +..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 357788899999999999999999888766 67788999999999999999999999999875 4467788889999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLW--------------LA-ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
.|++++|.+.++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 9999999999999988766666666655 44 4788899999999999999875 457789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH
Q 014978 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 237 (415)
.+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998874 45678899999999999999999999999988643 356788899999999999999
Q ss_pred HHHHHHHHHhccCCC-----------CCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 238 AENIYDEWESISGTG-----------DPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 238 a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
|...++++.+..+.. +...+..+..++...|+.++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999988765332 3556777777888888888887776643
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.1e-17 Score=153.56 Aligned_cols=331 Identities=13% Similarity=0.034 Sum_probs=277.0
Q ss_pred HHHHHHHHHH----hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 15 SYRQRVAQAQ----ALQTRARENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 15 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
.+..+..+.. .+++++|++.|+.+.+. .++.++..|...|.. .+++++|.+.|++..+.| ++..+..+
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 153 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4556677777 89999999999998775 377888889999988 899999999999998876 45677888
Q ss_pred HHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 87 LNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 87 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
...|.. .+++++|++.|++..+. .+..++..+...|.. .+++++|..+|++..+.| +...+..+...
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 228 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADM 228 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 888887 78999999999998764 578889999999988 899999999999999875 56778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|+.+|++..+.+ +...+..+...+.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 886 899999999999998864 55667777788877 899999999999998764 4456777788887
Q ss_pred hc-----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC---cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-
Q 014978 231 KL-----GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN---QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK- 301 (415)
Q Consensus 231 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 301 (415)
.. ++.++|...+++..+.+ +...+..+...|...| +.++|.++|++..+.| +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 77 89999999999998865 4567788888888766 8899999999999864 67888899999988
Q ss_pred ---cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Q 014978 302 ---KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYA 371 (415)
Q Consensus 302 ---~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 371 (415)
.+++++|..+|+++.+ . .+...+..|...|.. .+++++|...|++..+.++. ++.....+...+.
T Consensus 377 ~g~~~~~~~A~~~~~~A~~--~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAE--Q---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCCHHHHHHHHHHHHh--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 8999999999999988 3 357788889999988 89999999999999998854 4455555544433
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.6e-17 Score=154.06 Aligned_cols=359 Identities=11% Similarity=0.023 Sum_probs=215.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCcCc
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YISNGQLDK 98 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 98 (415)
.+.+.|++++|..+|+.+....| +...|...+..+.+.|++++|..+|+++.... |+...|...+.. ....|+.+.
T Consensus 21 ~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 21 REAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 35678999999999999998877 66789999999999999999999999999864 677777777753 345788888
Q ss_pred HHH----HHHHHhhc---CCCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 014978 99 VPQ----MLQELKKN---TSPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLY--- 159 (415)
Q Consensus 99 a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--- 159 (415)
|.+ +|+..... .+++...|...+....+ .|+++.|..+|++.++....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 776 67666543 34567788888887665 788999999999998742111123333222211
Q ss_pred ----------HhcCCHHHHHHHHHHHH------hcC---CCCC--------HHHHHHHHHHHHcC----CCh----HHHH
Q 014978 160 ----------IKMELPEKAATTLKEME------KRT---CRKN--------RVAYSSLLSLYTNM----GYK----DEVL 204 (415)
Q Consensus 160 ----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~ 204 (415)
.+.+++..|..++.+.. +.. ++|+ ...|...+...... ++. ..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 12334555555554421 111 1232 13344443322211 122 2555
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVK-------LGEFE-------KAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
.+|+++....+ .+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++
T Consensus 259 ~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 66666665432 244455555555543 46655 6666666665421123455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH-HHHcCChhHHHH
Q 014978 271 EMAESFYNRLVTKGIKPC-Y-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK-LEEQGDIDGAEH 347 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~ 347 (415)
++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|+++++. .+.+...+...+.. +...|++++|..
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 6666666666653 232 2 35666666666666666666666666551 11122222222211 224566666666
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 348 LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
+|++..+..|.++..|..++..+.+.|+. +..+|++....
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 66666666555666666666666666665 45566655554
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.9e-20 Score=162.63 Aligned_cols=309 Identities=15% Similarity=0.104 Sum_probs=146.4
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
.+.|++++|.++++.+. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~~----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 46788999999999883 3459999999999999999999999652 5777999999999999999999998
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 8877764 4557889999999999999999998885 367789999999999999999999999976
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 36899999999999999999999998 2678999999999999999999655443 2234444557889
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYN 334 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~ 334 (415)
.|.+.|++++|..+++..+... +-....|+-+...|++- ++..+.++.|..- ..++| +...|..+..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~----ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR----VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 34667888887777654 3444455544432 22333 3456888888
Q ss_pred HHHHcCChhHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHhcC
Q 014978 335 KLEEQGDIDGAEHLLVTLRNA------------GHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g 374 (415)
.|...++++.|....-+-... .+.+.+.|-..+..|....
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~ 342 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 342 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC
Confidence 899999999887643322212 3445667767777776444
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-17 Score=152.73 Aligned_cols=354 Identities=11% Similarity=0.010 Sum_probs=252.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcC---------CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C-CCC-C
Q 014978 17 RQRVAQAQALQTRARENFFENLPDK---------MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-----G-FLK-C 79 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~ 79 (415)
..|..+...|++++|++.|+++.+. .| ...+|+.+..+|...|++++|...+++..+. + ..+ .
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 4677888999999999999886542 23 3467899999999999999999999987642 1 011 2
Q ss_pred cccHHHHHHHHHh--cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014978 80 PLPYNHMLNLYIS--NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC---ASQNDKETAEKAFLELKKTKIDPDWISYST 154 (415)
Q Consensus 80 ~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 154 (415)
..++.....++.. .+++++|++.|++..+..|.+...+..+..++ ...++.++|++.+++..+.. +.+..++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 3455555555554 45689999999999887788888887777664 44577889999999988874 445666666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 155 LTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 155 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+..+. +..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 6655554 467889999999988774 557788999999999999999999999999886443 4556666665553
Q ss_pred hc-------------------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-
Q 014978 231 KL-------------------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT- 290 (415)
Q Consensus 231 ~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~- 290 (415)
.. +..+.|...++...+.. +.+..++..+...|...|++++|...|++.++....|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 22 23567888888877765 4477888999999999999999999999998865433221
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 291 -TWELLTW-GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 291 -~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
.+..+.. .....|++++|+..|.++++ +.|+...... ....+.++++...+.+|.+..+|..|..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2233332 34578999999999999987 5565443322 2345566777888888888889999999
Q ss_pred HHHhcCCC--cHHHHHHHHhC
Q 014978 369 TYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 369 ~~~~~g~~--a~~~~~~m~~~ 387 (415)
.|...|++ |...+++-.+.
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHCC------------
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 99999988 57777766554
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.2e-18 Score=148.07 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=98.0
Q ss_pred HhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 24 QALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
..|++..|+..++.+....|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3445555555554444333321 2333344445555555554443322 1 12333344444444444444444444
Q ss_pred HHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 102 MLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
.++++... .|.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444332 233333444444444444444444444443 2233444444444444444444444444444431
Q ss_pred CCCCHHHH---HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 180 CRKNRVAY---SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 180 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.. +.+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 221100 111122223344444444444444432 1233334444444444444444444444444332 223334
Q ss_pred HHHHHHHHHhcCcHHH-HHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEM-AESFYNRLV 281 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~-a~~~~~~~~ 281 (415)
+..++..+...|+.++ +.++++++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444444444444332 233444443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.5e-20 Score=161.93 Aligned_cols=289 Identities=13% Similarity=0.129 Sum_probs=138.7
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5688999999999883 235899999999999999999999965 35777999999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877764 4567889999999999999999998884 377789999999999999999999999976
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 296 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 296 (415)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 37999999999999999999999987 278899999999999999999966555422 2444455788
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCC-------CHHHHHHHHH
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHV-------STEIYNSLLR 368 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-------~~~~~~~l~~ 368 (415)
..|.+.|.+++|+.+++..+.. . +-....|+.|..+|++- +++...+.++...+ .+++ ....|.-++.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~l--e-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTS--T-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999872 2 44567788887777764 34444444443322 1111 2456999999
Q ss_pred HHHhcCCCcHHHHHHHHhCCC
Q 014978 369 TYAKAGKMPLIIVERMQKDNV 389 (415)
Q Consensus 369 ~~~~~g~~a~~~~~~m~~~~~ 389 (415)
.|.+.++++.++...|.....
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHhhchHHHHHHHHHhCChh
Confidence 999999998888777776544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=8e-18 Score=142.98 Aligned_cols=248 Identities=12% Similarity=0.057 Sum_probs=109.0
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
....|+++.|+..+++.... .|+. .....+.++|...|+++.|+..++. ..+|+..++..++..+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 33455555555555443332 1221 2233344555555555555543322 134444455555555555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
|.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443222 333444444555555555555555544 2344445555555555555555555555554
Q ss_pred HcccccChhhH---HHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 014978 212 SLFAKMNDAEY---TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288 (415)
Q Consensus 212 ~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 288 (415)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++.++... -+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 432 221110 011122222344444444444444432 22344444444444444444444444444443321 13
Q ss_pred HhHHHHHHHHHHhcCCHHH-HHHHHHHhHh
Q 014978 289 YTTWELLTWGYLKKGQMEK-VLECFKKAIG 317 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 317 (415)
..++..++..+...|+.++ +.++++++++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444432 2344444433
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.4e-16 Score=147.78 Aligned_cols=368 Identities=10% Similarity=0.038 Sum_probs=256.8
Q ss_pred HhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH
Q 014978 36 ENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 114 (415)
Q Consensus 36 ~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (415)
+......| +..+|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++..+..| +.
T Consensus 3 e~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 33334445 6789999998 478999999999999999864 55677899999999999999999999999988764 88
Q ss_pred hHHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhc
Q 014978 115 VTYNLWLAAC-ASQNDKETAEK----AFLELKKT-KIDP-DWISYSTLTSLYIK---------MELPEKAATTLKEMEKR 178 (415)
Q Consensus 115 ~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 178 (415)
..|..++... ...|+++.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 8888887644 45677777665 77776543 5443 45677777776655 68899999999999873
Q ss_pred CCCCCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHHH------cc---cccC--------hhhHHHHHHH
Q 014978 179 TCRKNRVAYSSLLSLY-------------TNMGYKDEVLRIWKKMMS------LF---AKMN--------DAEYTCVISS 228 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~ 228 (415)
...+....|....... ...+++..|..++..... .. ++|+ ...|...+..
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 1111123443332211 123556777777765321 11 2333 1345555533
Q ss_pred HHhc----CCh----HHHHHHHHHHHhccCCCCCchHHHHHHHHHh-------cCcHH-------HHHHHHHHHHhCCCC
Q 014978 229 LVKL----GEF----EKAENIYDEWESISGTGDPRVPNILLAAYIN-------RNQLE-------MAESFYNRLVTKGIK 286 (415)
Q Consensus 229 ~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~ 286 (415)
.... ++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+. +.
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~ 317 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LL 317 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TC
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hC
Confidence 3222 233 47788999988875 4478888888888876 68887 999999999863 23
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-H-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 287 P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-H-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 287 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
| +...|..++..+.+.|++++|..+|+++++ ..|+ . ..|..++..+.+.|++++|..+|++..+..+.....|
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 4 577899999999999999999999999988 3554 3 5888899999999999999999999999876655555
Q ss_pred HHHHHH-HHhcCCC--cHHHHHHHHhCCCCCC-HHHH-HHHHHhccCC-cccccccc
Q 014978 364 NSLLRT-YAKAGKM--PLIIVERMQKDNVQMD-AETQ-KVLKITSEMP-VSEVSSIF 414 (415)
Q Consensus 364 ~~l~~~-~~~~g~~--a~~~~~~m~~~~~~p~-~~t~-~~l~~~~~~~-~~~~~~~~ 414 (415)
...... +...|+. |..+|+...+. .|+ ...+ .+.......+ .+++..+|
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 443333 3457877 57778766654 254 3333 4444444444 44554443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.2e-17 Score=136.34 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----HHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR--KN----RVAY 187 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 187 (415)
...+..+...+...|++++|..+|+++.+.. .+..++..+..++...|++++|.+.++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666677777777777777777776665 56666777777777777777777777766653211 11 4566
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 667777777777777777777776643 332 23455566777777777766543 22455666677777777
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 347 (415)
|++++|...++++.+... .+...+..+...+...|++++|+..++++++. .+.+...+..+..++...|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777766432 24566777777777777777777777777662 23446667777777777777777777
Q ss_pred HHHHHHHcC
Q 014978 348 LLVTLRNAG 356 (415)
Q Consensus 348 ~~~~~~~~~ 356 (415)
.++++.+..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 777776665
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=166.47 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=108.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988763 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYK-DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 188 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999885 78899999999999999999999888655543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.4e-17 Score=134.52 Aligned_cols=222 Identities=13% Similarity=0.020 Sum_probs=113.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---C----HhHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---D----VVTYN 118 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~ 118 (415)
..|..+...+...|++++|.+.|++..+.. .+...|..+..++...|++++|++.+++..+..+. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 55556666666666666666666666665443111 1 35555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.+..++...|++++|...|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 5666666666666666666665554 2332 22334445555555555555431 223334444555555555
Q ss_pred ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555443221 33344444444444555555555554444432 2233344444444444444444444444
Q ss_pred HHH
Q 014978 279 RLV 281 (415)
Q Consensus 279 ~~~ 281 (415)
+..
T Consensus 232 ~a~ 234 (258)
T 3uq3_A 232 AAR 234 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=4.3e-17 Score=132.45 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
+..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..|.+...+..+..++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3344444444444444444444444444432 223333444444444444444444444444443344444444444444
Q ss_pred Hhc
Q 014978 125 ASQ 127 (415)
Q Consensus 125 ~~~ 127 (415)
...
T Consensus 84 ~~~ 86 (217)
T 2pl2_A 84 VAL 86 (217)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=1.6e-16 Score=134.12 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc----HHHHHHHH
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLY 90 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~ 90 (415)
+..+..+...|++++|+..|+.+.+..| ++.++..+...+...|++++|++.+++..+.+ ++... |..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHH
Confidence 4556666677777777777777666655 44567777777777777777777777776632 33332 56666667
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
...|++++|++.|++..+..|.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666656666677777777777777777777777666552 3344555555523333446777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcc-cccC------hhhHHHHHHHHHhcCChHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIWKKMMSLF-AKMN------DAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...+...|++++|..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 776666652 3335555555666655555 566666666665542 1112 1245555555666666666666
Q ss_pred HHHHHHhc
Q 014978 241 IYDEWESI 248 (415)
Q Consensus 241 ~~~~~~~~ 248 (415)
.++++.+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=6.3e-17 Score=131.48 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=93.8
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
++...+..+...+.+.|++++|+..|++..+..|.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4445555555556666666666666666555555556666666666666666666666666655543 334445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 158 LYIKM-----------ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 158 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
++.+. |++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 55555555555544432 2234444444444555555555555555544443 2344444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
.++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444455555555544444432 22333444444444444444444444443
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-14 Score=132.72 Aligned_cols=309 Identities=13% Similarity=0.015 Sum_probs=227.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C---CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc------
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-----G---FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN------ 109 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 109 (415)
....|+.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4678999999999999999999999987542 1 1223457888999999999999999999986542
Q ss_pred --CCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 014978 110 --TSPDVVTYNLWLAACASQ--NDKETAEKAFLELKKTKIDPDWISYSTLTSLY---IKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 110 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
.+....++..+..++... +++++|+..|++..+.. +.+...+..+..++ ...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 123355677666666554 57999999999999874 34455665555553 45678889999999988764 44
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 183 NRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 183 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
+...+..+...+.. .+++++|.+.+++.....+. +..++..+...+...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 56666666555543 46788999999998886543 66678889999999999999999999998875 33566677
Q ss_pred HHHHHHHhc-------------------CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 014978 259 ILLAAYINR-------------------NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 259 ~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
.+..+|... +..+.|...++...+... .+...+..+...+...|++++|+..|+++++
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-- 362 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS-- 362 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh--
Confidence 676665432 346678888888877532 3566888899999999999999999999987
Q ss_pred cCCCCCHH----HHHHHHH-HHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 320 RKWVPDHR----LITAAYN-KLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 320 ~~~~p~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
..|+.. .+..+.. .....|++++|+..|++..+..+.+..
T Consensus 363 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 363 --KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred --cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 234332 2233332 245679999999999999998887543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=4e-16 Score=131.59 Aligned_cols=253 Identities=11% Similarity=0.037 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSL 193 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 193 (415)
.+......+...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.++++.+.+..|+ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44455566666666666666666666553 23344566666666666666666666666665321111 2235666666
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 273 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 273 (415)
+...|++++|+..+++..+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776665332 44566667777777777777777777666553 33455555555233344577777
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCC------HHHHHHHHHHHHHcCChhH
Q 014978 274 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPD------HRLITAAYNKLEEQGDIDG 344 (415)
Q Consensus 274 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~ 344 (415)
.+.|+++.+... .+...+..+...+...|+ +++|...++++.+.. .-.|+ ...+..+...|...|++++
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777776431 235566667777777777 777777777777631 11222 2567777888888888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 345 AEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
|...|+++.+..|.+..++..+.......
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 88888888888888877777666555443
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=163.64 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEME---KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 222 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (415)
..-..||++||++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345699999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 223 TCVISSLVKLGEF-EKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 223 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999999985 789999999999999999999999987665543
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=2.3e-15 Score=146.05 Aligned_cols=320 Identities=13% Similarity=0.115 Sum_probs=238.3
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.|..+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. .++.+|..+..++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 35566788889999999988742 2222233332 678888888888855 24568889999999999999
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
+|++.|.+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999999664 577888889999999999999999998877764 34333445888899998888544332 2
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchH
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 257 (415)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 356667778899999999999999999885 36888999999999999999998875 356788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.. . +-....|+-+..++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--e-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--C-hhHhHHHHHHHHHHH
Confidence 88888999999998888876543 235667789999999999999999999888762 1 333456666666666
Q ss_pred Hc--CChhHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 014978 338 EQ--GDIDGAEHLLVTLRNAGH-----VSTEIYNSLLRTYAKAGKMPLIIVERMQK 386 (415)
Q Consensus 338 ~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 386 (415)
+. ++..++.+.|..-....+ .....|..++..|.+.|+++.++...|..
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 54 444555555554333222 23577999999999999997666555544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=7.9e-16 Score=135.08 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=186.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL-PEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|+++.+.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888887764 4456677788888888886 888888888887764 44677788888
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-cCcH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQL 270 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 270 (415)
.++...|++++|+..|+++++..+. +...|..+..++...|++++|...++++.+.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888888876543 56677778888888888888888888888765 3367778888888877 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC---
Q 014978 271 EMA-----ESFYNRLVTKGIKPCYTTWELLTWGYLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG--- 340 (415)
Q Consensus 271 ~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 340 (415)
++| ...+++.+.... -+...|..+...+...| ++++|++.+.++ + ..+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhccc
Confidence 666 477777776432 15567777777777777 578888888776 4 23455677778888887764
Q ss_pred ------ChhHHHHHHHHH-HHcCCCCHHHHHHHHHHHHhc
Q 014978 341 ------DIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 341 ------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 373 (415)
.+++|..+|+++ .+.+|.....|..+...+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258888888888 777777778888777766543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=8.6e-15 Score=123.52 Aligned_cols=229 Identities=15% Similarity=0.028 Sum_probs=173.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
+.+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3456677777777888888888888888877732 45667777777777 888888888888877764 5667
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 187 YSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 187 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 788888888888877754 55667777777777 788888888888877754 455667
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHH
Q 014978 259 ILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLIT 330 (415)
Q Consensus 259 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 330 (415)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|+++.+ . . +...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~--~-~~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--L--E-NGGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--T--T-CHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--C--C-CHHHHH
Confidence 77777777 788888888888887764 45677778888888 8888888888888877 2 2 366777
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHcCCCC
Q 014978 331 AAYNKLEE----QGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 331 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 359 (415)
.+...|.. .+++++|...|++..+.++.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77788887 888888888888888877653
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=9.3e-17 Score=135.69 Aligned_cols=218 Identities=12% Similarity=0.028 Sum_probs=116.3
Q ss_pred hhhhHHHHHHHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 25 ALQTRARENFFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.|++++|++.|+.+....+ ++.+|..+...+...|++++|...|+++.+.+ +.+..+|..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666555421 34455566666666666666666666666543 23455555566666666666666
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
...|+++.+..|.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66666665555555566666666666666666666666666554 2333333333334445566666666665555442
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+++...+. ++..+...++.++|...+++........ +..++..+...+...|++++|...++++.+
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22333332 4444555555555555555554432210 123444455555555555555555555544
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=9.7e-16 Score=134.55 Aligned_cols=247 Identities=13% Similarity=0.152 Sum_probs=173.9
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-cCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
..+|..+...+...|++++|++.+++.++.. +.+..+|+.+..++...|+ +++|+..|+++.+..|.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777777788888888888888887764 3356677777778888886 8888888888877777788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-CCChHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-MGYKDE 202 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 202 (415)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888888764 4566778888888888888888888888887764 4466777777777777 555466
Q ss_pred H-----HHHHHHHHHcccccChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-------
Q 014978 203 V-----LRIWKKMMSLFAKMNDAEYTCVISSLVKLG--EFEKAENIYDEWESISGTGDPRVPNILLAAYINRN------- 268 (415)
Q Consensus 203 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 268 (415)
| ++.+++.+...+. +...|..+...+...| ++++|...+.++ +.. +.+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4777777765433 4556777777777766 577777777776 322 334556667777777653
Q ss_pred --cHHHHHHHHHHH-HhCCCCCC-HhHHHHHHHHH
Q 014978 269 --QLEMAESFYNRL-VTKGIKPC-YTTWELLTWGY 299 (415)
Q Consensus 269 --~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 299 (415)
..++|.++++++ .+. .|. ...|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247777777777 553 343 33454444443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=2e-16 Score=133.61 Aligned_cols=184 Identities=10% Similarity=-0.099 Sum_probs=94.9
Q ss_pred hcCcHHHHHHHHHHHHhcCC---CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGF---LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 133 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (415)
..|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+..|.+..+|..++.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 44666677777776665421 112345555566666666666666666666555555566666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
...|+++.+.. +.+..++..+..+|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666665542 234455555555666666666666666555553 222222222223333345555555555444443
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
.. ++...+ .++..+...++.++|...+...
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 21 122222 2333344444444444444444
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=8.7e-16 Score=127.15 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.... +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344455555555566666666665555532 334555555555666666666666666665554322 444555556666
Q ss_pred HhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 230 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665543 2345556666666666777777777776666542 124566667777777777777777
Q ss_pred HHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 310 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
..++++... .+.+..++..+..++...|++++|...++++.+..+.+..++..+..
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 777777662 23456677777777777788888888888777777776666555443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=4.7e-15 Score=123.53 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=91.7
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
.|..+...+...|++++|.+.|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344444444555555555555555444444444555555555555555555555555554442 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544411122 2333444444455555555555555554443221 23344444444444455555554
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
.++.+.+.. +.+...+..+...+...|+.++|.+.++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444332 22333344444444444444444444444444
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=7.3e-15 Score=122.33 Aligned_cols=204 Identities=13% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3444444444444444444444444331 223344444444444444444444444444443221 33344444444555
Q ss_pred cCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 232 LGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 310 (415)
.|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544411111 233444455555555555555555555554321 134555556666666666666666
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
.++++.+ ..+.+...+..+...+...|++++|.+.++++.+..+.+..
T Consensus 197 ~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 197 YYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 6666554 22334555555556666666666666666666665555443
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=6.4e-15 Score=120.26 Aligned_cols=202 Identities=14% Similarity=0.037 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+.+..++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34455566666666666666666666665543 23344555555556666666666666666555445555556666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH
Q 014978 124 CASQ-NDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201 (415)
Q Consensus 124 ~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (415)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666655521122 23445555555555566666655555555442 223445555555555555555
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+|...++++.+..+..+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555443212333444444444555555555555555443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=4.8e-16 Score=128.73 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
|..+...+...|++++|...|+++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33333444444444444444444443333444444444444444444444444444444332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 22334444444444444444444444444444321 13334444444444555555555555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+.+.+.. +.+..++..+..+|...|++++|...++++.+
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5444432 22334444455555555555555555555444
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.3e-14 Score=118.47 Aligned_cols=206 Identities=13% Similarity=0.076 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 44444444444555555555554444432 223444444445555555555555555554443221 3334444555555
Q ss_pred hc-CChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 231 KL-GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 308 (415)
Q Consensus 231 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 308 (415)
.. |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 55 55555555555554411111 133445555555555666666665555554321 1345555666666666666666
Q ss_pred HHHHHHhHhcccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 309 LECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 309 ~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
...++++.+. .+ .+...+..+...+...|+.+.|..+++.+.+..|.+...
T Consensus 167 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 167 DYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 6666666551 12 345555555555666666666666666666555554443
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=5.1e-15 Score=133.95 Aligned_cols=347 Identities=12% Similarity=0.062 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcH---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKS---AEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
...+..+.+.|++++|+++|+.+.+. .++.++..|...|...|++ ++|.+.|++..+. ++..+..+...+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45677888999999999999998764 3667777777788888888 8999999988754 55667777775555
Q ss_pred cC-----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 93 NG-----QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE---TAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 93 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+ ++++|+..|++..+... ...+..|...|...+..+ .+.+.+......| +......+...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 55 67789999998876433 337777777777665543 4455555555554 34566677777887775
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc----CChHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG---YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----GEFEK 237 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 237 (415)
++++......+.+.-...+...+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5554444333322211223337777888888888 888888888888887643 444445566666544 68888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHH-H--HhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----CHHHHH
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAA-Y--INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-----QMEKVL 309 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~ 309 (415)
|...|+... . .+...+..+... + ...+++++|.++|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888888876 3 356667777766 3 45788889999998888765 5667777777776 44 888888
Q ss_pred HHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCC--cHH
Q 014978 310 ECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA----GKM--PLI 379 (415)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~--a~~ 379 (415)
.+|+++. +-+......|...|.. ..++++|...|++..+.|.. .....|...|..- .+. +..
T Consensus 308 ~~~~~Aa------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 308 AHFEKAV------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN--SADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHTTT------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT--THHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHh------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH--HHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 8888764 3456677777766665 33888899988888876654 3455566666532 122 344
Q ss_pred HHHHHHhCCC
Q 014978 380 IVERMQKDNV 389 (415)
Q Consensus 380 ~~~~m~~~~~ 389 (415)
.+..-.+.|.
T Consensus 380 ~~~~A~~~g~ 389 (452)
T 3e4b_A 380 FSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 5555444443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=2.6e-14 Score=120.58 Aligned_cols=218 Identities=12% Similarity=0.006 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..+...+...|++++|+..|++..+ +.+..++..+...+.. .+++++|...|++..+.+ +...+..+...
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 33333444444444444444444333 2233344444444444 444444444444444443 33444444444
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 444 455555555554444432 33444444444444 455555555555544432 2233444444444
Q ss_pred h----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-
Q 014978 231 K----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK- 301 (415)
Q Consensus 231 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 301 (415)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 4 455555555555544432 23344445555555 555555555555555542 23444455555555
Q ss_pred ---cCCHHHHHHHHHHhHh
Q 014978 302 ---KGQMEKVLECFKKAIG 317 (415)
Q Consensus 302 ---~~~~~~a~~~~~~~~~ 317 (415)
.+++++|.+.|+++.+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 5555566665555554
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=6.1e-14 Score=136.25 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=240.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
...|++++|.++.++. -++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++
T Consensus 1087 e~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1087 EHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3778888998888865 35789999999999999999999999663 4677888999999999999999999
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
|...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1157 L~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1157 LQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 99877653 33333445999999999988644443 2 456677778999999999999999999985
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence 37899999999999999999999987 25678999999999999999998876542 345667778999
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYN 334 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~ 334 (415)
.|.+.|.+++|..+++..+... +-....|.-+...|++- ++..++.++|..-.. ++| +...|..++.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin----i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN----IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc----cchHhHHHHHHHHHHHHHH
Confidence 9999999999999998887654 23455776676666653 455566666664332 333 4567899999
Q ss_pred HHHHcCChhHHHHHHHHHHH------------cCCCCHHHHHHHHHHHHhcC
Q 014978 335 KLEEQGDIDGAEHLLVTLRN------------AGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g 374 (415)
.|.+.|+++.|....-+-.. ..+.+++.|...+..|...+
T Consensus 1364 LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 99999999999833222111 13446788888888887666
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.2e-15 Score=136.40 Aligned_cols=176 Identities=18% Similarity=0.151 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHccc----cc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCc
Q 014978 200 KDEVLRIWKKMMSLFA----KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQ 269 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 269 (415)
+++|...+++...... .| ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 5555555555443210 11 1224566666667777777777777766543211 11 1256667777777788
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcC
Q 014978 270 LEMAESFYNRLVTK----GIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQG 340 (415)
Q Consensus 270 ~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 340 (415)
+++|...+++..+. +..+ ...++..+...|...|++++|...++++....... ++ ..++..+...|...|
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcC
Confidence 88877777776532 1101 13466777888888888888888888877632111 12 456777888888889
Q ss_pred ChhHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHhcCCC
Q 014978 341 DIDGAEHLLVTLRNAG----HV--STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~ 376 (415)
++++|...+++..+.. .. ...++..+...+...|+.
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999998888876532 11 235677888888887765
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=4.2e-14 Score=127.97 Aligned_cols=319 Identities=14% Similarity=0.086 Sum_probs=216.8
Q ss_pred HHHHHHhhhh---HHHHHHHHhcCcCCCCcchHHHHHHHHHhcC-----cHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 19 RVAQAQALQT---RARENFFENLPDKMRGPDTCSALLHSYVQNK-----KSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 19 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
+..+...|+. ++|++.|+.+.+. ++.++..+...+...+ ++++|...|++..+.| +...+..+...|
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 116 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLY 116 (452)
T ss_dssp C------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344556777 9999999999875 7788888888666655 8899999999999876 334777888888
Q ss_pred HhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 014978 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPE 166 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~ 166 (415)
...+..+++.+.++.+.+. .+.+...+..+...|...+.++.+......+.+.-...++..+..|...|.+.| +.+
T Consensus 117 ~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 117 LQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 8776655444444443332 234567788888889888866555544333322212223448888999999999 999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHcccccChhhHHHHHHH-H--HhcCChHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNM----GYKDEVLRIWKKMMSLFAKMNDAEYTCVISS-L--VKLGEFEKAE 239 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~ 239 (415)
+|++.|++..+.| +++...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|.
T Consensus 197 ~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 9999999999987 55666667788887665 79999999999987 32 45566666666 3 4689999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcC-----cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHH
Q 014978 240 NIYDEWESISGTGDPRVPNILLAAYINRN-----QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLE 310 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 310 (415)
..|++..+.| +...+..|...|. .| ++++|.++|++.. .| +...+..+...|.. ..++++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999998765 6677888888887 55 9999999999888 43 66777778777776 349999999
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
+|+++.+ .+. ......|...|.. ..+.++|..+|+...+.|....
T Consensus 344 ~~~~Aa~--~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 344 HLLTAAR--NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp HHHHHHT--TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHh--hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999988 342 3445556666653 4589999999999999886543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1e-15 Score=136.88 Aligned_cols=296 Identities=12% Similarity=0.010 Sum_probs=174.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcCcHHHHHHHHhhc---C---CCCHhH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHMLNLYISNGQLDKVPQMLQELKKN---T---SPDVVT 116 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~ 116 (415)
.+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... . +....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444555555566666666665555542 111 134445555555566666666655554322 1 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKI-DPD----WISYSTLTSLYIKMEL--------------------PEKAATT 171 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 171 (415)
+..+..++...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55666666666666666666666543310 011 2356666666777777 7777777
Q ss_pred HHHHHhc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC----hhhHHHHHHHHHhcCChHHHHHH
Q 014978 172 LKEMEKR----TCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 172 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+++.... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6665432 101 11345666777777778888888877777654221 11 12566777777888888888888
Q ss_pred HHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHH
Q 014978 242 YDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 242 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+++..+.... ++ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776643211 11 34666778888888888888888887764211 011 44677788888899999999999
Q ss_pred HHHhHhcccCCC---CCHHHHHHHHHHHHHcCChh
Q 014978 312 FKKAIGSVRKWV---PDHRLITAAYNKLEEQGDID 343 (415)
Q Consensus 312 ~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 343 (415)
++++.+...... ....++..+...+...|+..
T Consensus 330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 988876322221 12345666666777777653
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=5.3e-16 Score=134.90 Aligned_cols=273 Identities=14% Similarity=0.045 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-----cchHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCCC-CcccH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG-----PDTCSALLHSYVQNKKSAEAEALMEKMSEC----GFLK-CPLPY 83 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 83 (415)
..+..|..+...|++++|+..|+.+....|+ ..++..+...+...|++++|.+.+++..+. +..| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566666667777777777666555443 245556666666666666666666655432 1011 12344
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcC--CCC----HhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNT--SPD----VVTYNLWLAACASQND--------------------KETAEKAF 137 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 137 (415)
..+...+...|++++|...+++..+.. .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 445555555555555555555543320 111 2244444445555555 44444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 138 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
++..+.. ...+. +.....+..+...+...|++++|...+++..+....
T Consensus 167 ~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 167 EENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4332210 00000 011223444555555555555555555554433111
Q ss_pred -cC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCC--
Q 014978 217 -MN----DAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKG-- 284 (415)
Q Consensus 217 -~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 284 (415)
++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01 114555555556666666666666555432111 01 3345556666666666666666666654321
Q ss_pred --CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 285 --IKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 285 --~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
-.+ ...++..+...|.+.|++++|...++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 123556666777777777777777777765
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=2.8e-15 Score=134.48 Aligned_cols=270 Identities=15% Similarity=0.064 Sum_probs=144.3
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKETAEKAFLELKKT----K-IDPDWISYSTLTSL 158 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l~~~ 158 (415)
..+...|++++|+..|+++.+..+.+. ..+..+..++...|++++|...+++..+. + .+....++..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 334444444444444444443322222 23444444445555555555544444322 0 01122344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHcCCC-----------------hHHHHHHHHHHHHcc--
Q 014978 159 YIKMELPEKAATTLKEMEKR----T-CRKNRVAYSSLLSLYTNMGY-----------------KDEVLRIWKKMMSLF-- 214 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~~-- 214 (415)
|...|++++|...+++..+. + .+....++..+...+...|+ +++|++.+++..+..
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544332 0 01112344555555555555 555555555544321
Q ss_pred --c-ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-
Q 014978 215 --A-KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGI- 285 (415)
Q Consensus 215 --~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 285 (415)
. .....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 0 111224555666666677777777766665543211 01 12566677777777777777777776654210
Q ss_pred -C---CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 286 -K---PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 286 -~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
. ....++..+...+...|++++|...+++++....... ....++..+...|...|++++|...+++..+...
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 0 0134666777788888888888888888776311111 1134667777888888888888888888877543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=7.8e-16 Score=138.08 Aligned_cols=271 Identities=13% Similarity=0.021 Sum_probs=188.9
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCCcCcHHHHHHHHhhc------CCCC
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKN------TSPD 113 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 113 (415)
...+..+...+...|++++|+..|++..+.+ |+. ..|..+...+...|++++|...+++..+. .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667777778888888888888877753 332 35667777777888888888888776543 2334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKT----K-IDPDWISYSTLTSLYIKMEL-----------------PEKAATT 171 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 171 (415)
..++..+..++...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777888888888888888888776543 1 11234467778888888888 8888888
Q ss_pred HHHHHhc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC----hhhHHHHHHHHHhcCChHHHHHH
Q 014978 172 LKEMEKR----TC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 172 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+++..+. +. +....++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776542 11 112346777788888888888888888887664321 11 12677778888888888888888
Q ss_pred HHHHHhccCCC-----CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC----CCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 242 YDEWESISGTG-----DPRVPNILLAAYINRNQLEMAESFYNRLVTKG----IKP-CYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 242 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+++........ ...++..+...|...|++++|...+++..+.. ..+ ...++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 88776542111 14567778888888889888888888776421 001 134677788888899999999999
Q ss_pred HHHhHh
Q 014978 312 FKKAIG 317 (415)
Q Consensus 312 ~~~~~~ 317 (415)
++++.+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998887
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=9.5e-15 Score=126.91 Aligned_cols=269 Identities=15% Similarity=0.092 Sum_probs=165.7
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPD----VVTYNLWLAACASQNDKETAEKAFLELKKT----KID-PDWISYSTLTSL 158 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~ 158 (415)
..+...|++++|...|+++.+..+.+ ...+..+...+...|++++|...+++..+. +.. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33444444444444444444332222 234445555555555555555555544322 111 113345556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCC--------------------hHHHHHHHHHHHHc
Q 014978 159 YIKMELPEKAATTLKEMEKRTC-RKN----RVAYSSLLSLYTNMGY--------------------KDEVLRIWKKMMSL 213 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~ 213 (415)
+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543210 011 2355666666777777 77777777665543
Q ss_pred c----ccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 214 F----AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 214 ~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
. ..+ ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 111 2336777888889999999999999987653211 11 236778888899999999999999887642
Q ss_pred CC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 284 GI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 284 ~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.. .++ ..++..+...+...|++++|...++++........ ....++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 011 45677788889999999999999998876321111 11346777888899999999999999988875
Q ss_pred C
Q 014978 356 G 356 (415)
Q Consensus 356 ~ 356 (415)
.
T Consensus 333 ~ 333 (338)
T 3ro2_A 333 S 333 (338)
T ss_dssp -
T ss_pred H
Confidence 3
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.4e-13 Score=118.18 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=149.2
Q ss_pred HHHHHHHHhcCcCCC-CcchHHHHHHHHHh-------cCcH-------HHHHHHHHHHHhc-CCCCCcccHHHHHHHHHh
Q 014978 29 RARENFFENLPDKMR-GPDTCSALLHSYVQ-------NKKS-------AEAEALMEKMSEC-GFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 29 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 92 (415)
++|+..|+.+....| ++..|..++..+.. .|++ ++|..+|++..+. . +.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHh
Confidence 678888888877655 66788877777653 4664 7788888887763 2 2244567777777777
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVV-TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI-KMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a~~ 170 (415)
.|++++|..+|+++.+..|.+.. +|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887765444444 77777777777888888888888877664 334444443333322 2577788888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-ccc--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKM--NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887777652 3456677777777777778888888887777752 233 344666667777777777777777777766
Q ss_pred cc
Q 014978 248 IS 249 (415)
Q Consensus 248 ~~ 249 (415)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=5.2e-14 Score=111.10 Aligned_cols=167 Identities=15% Similarity=0.093 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|..+...|...|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45566666777777777777777777766654 33455666666666677777777777766666556666666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 667777777777776666553 3445566666666777777777777776666653 34556666666667777777777
Q ss_pred HHHHHHHHHc
Q 014978 204 LRIWKKMMSL 213 (415)
Q Consensus 204 ~~~~~~~~~~ 213 (415)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777666653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=4.4e-13 Score=115.05 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-------cCCc-------CcHHHHHHHHhhc-CCCCHhHHHHHHHHHHh
Q 014978 62 AEAEALMEKMSECGFLKCPLPYNHMLNLYIS-------NGQL-------DKVPQMLQELKKN-TSPDVVTYNLWLAACAS 126 (415)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 126 (415)
++|..+|++..... +.++..|..++..+.. .|++ ++|..+|++..+. .|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 3345555555555442 3554 5666666666553 44455566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCCChHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPD-WI-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT-NMGYKDEV 203 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 203 (415)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666554 232 22 55555555556666666666666655542 223333332222211 24555555
Q ss_pred HHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc-CCC--CCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 204 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS-GTG--DPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
..+|++..+..+. +...|..++..+.+.|+.++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544222 33444455555555555555555555554431 122 2234444455555555555555555555
Q ss_pred Hh
Q 014978 281 VT 282 (415)
Q Consensus 281 ~~ 282 (415)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=3e-14 Score=129.74 Aligned_cols=213 Identities=14% Similarity=0.039 Sum_probs=100.1
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++++..++......+.+...+..+..++...|++ ++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444333344444455555555555555 55555555544442 223444455555555555555555555554
Q ss_pred HhcCCCCCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc--------CChHHH
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNM---------GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL--------GEFEKA 238 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a 238 (415)
.+. .|+...+..+...+... |++++|+..+++..+..+. +...|..+..++... |++++|
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 443 23344444444555554 5555555555555443221 333444444444444 555555
Q ss_pred HHHHHHHHhccCC--CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 239 ENIYDEWESISGT--GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 239 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
...|++..+..+. .+...+..+..+|...|++++|...|++..+... .+...+..+...+...|++++|++.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555443210 2444455555555555555555555555544321 1333444455555555555555544433
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.1e-13 Score=122.76 Aligned_cols=231 Identities=9% Similarity=0.052 Sum_probs=161.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC------RKNRVAYS 188 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 188 (415)
....+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566777888888888888888754 1111 235677888888888888888888888765311 11234677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhc----cC-CCCCchHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESI----SG-TGDPRVPN 258 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 258 (415)
.+...|...|++++|+..+++..+.....+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888888776522111 136777888888889999888888887662 22 22355677
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCC---CC-CHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGI---KP-CYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
.+...|...|++++|...+++..+... .| ....+..+...+...|+ +++|+.++++... .+.....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML----YADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC----HHHHHHHHHH
Confidence 888888888999998888888764210 11 12234566777777888 7777777776521 2223356677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999999999888765
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=2.6e-14 Score=126.93 Aligned_cols=299 Identities=8% Similarity=-0.022 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCC----CC--cchHHHHHHH--HHhcCcHHHHH-----------HHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKM----RG--PDTCSALLHS--YVQNKKSAEAE-----------ALMEKMSECG 75 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~ 75 (415)
.+.......+.+++++|..+++++.+.. .+ ...|..++.. ..-.++++.+. +.++.+....
T Consensus 15 ~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~ 94 (383)
T 3ulq_A 15 KINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ 94 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC
Confidence 4455556789999999999999876542 22 2333444332 22334444455 6666665432
Q ss_pred CCCCccc------HHHHHHHHHhcCCcCcHHHHHHHHhhc---CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 76 FLKCPLP------YNHMLNLYISNGQLDKVPQMLQELKKN---TSP---DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 76 ~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
++... +......+...|++++|+..|++..+. .+. ...++..+..++...|+++.|...+++..+.
T Consensus 95 --~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 95 --ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111 222556778899999999999998764 222 3467899999999999999999999998754
Q ss_pred C--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 K--I----DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
- . +....+++.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|+..+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1 112357888999999999999999999988753111 11 24788899999999999999999999887
Q ss_pred c----cc-ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCCCchHHHHHHHHHhcCc---HHHHHHHHHHH
Q 014978 213 L----FA-KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG----TGDPRVPNILLAAYINRNQ---LEMAESFYNRL 280 (415)
Q Consensus 213 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 280 (415)
. +. +....++..+...+...|++++|...+++..+... +.....+..+...+...|+ +++|..++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3 22 22355788899999999999999999998765321 1112235667888888898 77777777665
Q ss_pred HhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 014978 281 VTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318 (415)
Q Consensus 281 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 318 (415)
+..| ....+..+...|...|++++|...++++.+.
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2233 3346778889999999999999999998873
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=6.4e-14 Score=127.59 Aligned_cols=195 Identities=13% Similarity=-0.056 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 148 DWISYSTLTSLYIKMELP-EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444444444444554 55555554444432 2234444444444444455555555554444432 3334444444
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--------CcHHHHHHHHHHHHhCCCC--C
Q 014978 227 SSLVKL---------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINR--------NQLEMAESFYNRLVTKGIK--P 287 (415)
Q Consensus 227 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~--p 287 (415)
..+... |++++|...+++..+.. +.+...|..+..+|... |++++|...|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 444444 44455555554444432 22344444444444444 4455555555444442110 1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
+...|..+...|...|++++|...|+++++. .+.+...+..+..++...|++++|...+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555555555444441 1223334444444444444444444433
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=2.6e-13 Score=107.04 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=103.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...|..+..++...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45556666666666666666666666666553 3345566666666666666666666666665542 334555555666
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
.+...++++.+...+.+.....+. +...+..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666654322 44556666666666666666666666666654 3355566666666666777777
Q ss_pred HHHHHHHHHhC
Q 014978 273 AESFYNRLVTK 283 (415)
Q Consensus 273 a~~~~~~~~~~ 283 (415)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=125.45 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=111.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------TC 180 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 180 (415)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555555555555555442 11222334555555555555555555555555432 11
Q ss_pred -CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc------ccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 014978 181 -RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF------AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI---- 248 (415)
Q Consensus 181 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 248 (415)
+....++..+...+...|++++|...++++.+.. ..| ....+..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1123345555555555566666655555554431 111 1223455555555666666666666555442
Q ss_pred --c-CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC-------CCCCCHh-------HHHHHHHHHHhcCCHHHHHHH
Q 014978 249 --S-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCYT-------TWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 249 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+ .+....++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1 0111234455555666666666666666655431 0111111 111122223334445555555
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
+..... ..+.+..++..+..+|.+.|++++|...|++..+.
T Consensus 267 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555543 12234456677777777778888887777777654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=126.54 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--------
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSEC-------GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-------- 109 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 109 (415)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 466777888888888888888888887763 22223455666777777777777777777775532
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
.+....++..+..++...|++++|...++++.+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1233456666777777777777777777766543 11 112335566666666667777776666666543
Q ss_pred --CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 179 --TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 179 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+..| ...++..+...+...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233455566666666666666666666654
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=3e-12 Score=113.30 Aligned_cols=307 Identities=11% Similarity=0.033 Sum_probs=203.8
Q ss_pred CCcchHHHHHHHH--HhcCcHHHHHHHHHHHHhcC--CCCC--cccHHHHHHH--HHhcCCcCcHH---------HHHHH
Q 014978 43 RGPDTCSALLHSY--VQNKKSAEAEALMEKMSECG--FLKC--PLPYNHMLNL--YISNGQLDKVP---------QMLQE 105 (415)
Q Consensus 43 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 105 (415)
|+..+-+.|-.-| ...+++++|.++++++.+.. +..| ...|-.++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444444444444 67888888888888775531 1112 2222333221 11123344444 66766
Q ss_pred HhhcCCC-C--H--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 106 LKKNTSP-D--V--VTYNLWLAACASQNDKETAEKAFLELKKTKI-DP----DWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 106 ~~~~~~~-~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
+.....+ + . ..+......+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6543111 1 1 1233455667889999999999999875421 12 2447788899999999999999999887
Q ss_pred HhcCC-----CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-c----ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 176 EKRTC-----RK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-M----NDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 176 ~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
.+... .+ ...+++.+...|...|++++|.+.+++..+.... + ...++..+..++...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65311 11 2456778889999999999999999988764211 1 123677888899999999999999998
Q ss_pred HHh-----ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---CCC-HhHHHHHHHHHHhcCC---HHHHHHHH
Q 014978 245 WES-----ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---KPC-YTTWELLTWGYLKKGQ---MEKVLECF 312 (415)
Q Consensus 245 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~a~~~~ 312 (415)
..+ .. +....++..+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 33 22366778889999999999999999998876321 122 2345555566667777 77888887
Q ss_pred HHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 313 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
++.. ..+.....+..+...|...|++++|...|++..+
T Consensus 327 ~~~~----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN----LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7632 1222335667788889999999999999998865
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.2e-11 Score=109.20 Aligned_cols=202 Identities=10% Similarity=0.083 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc----Chhh
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAE 221 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 221 (415)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34444455555555555555544331 111 1 12233444455555555555555555554432110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-chHH-----HHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhHH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTW 292 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~ 292 (415)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 444555555566666666666555443212111 1111 122334556666666666665554221111 1134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhcccCC--CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 293 ELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 293 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+...+...|++++|...++++....... .++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666655421111 1111 2444455566666777777666666554
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=1.3e-12 Score=102.81 Aligned_cols=159 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+..+..+...|++++|++.|+.+....| +..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 3445555566666666666666555543 34455555555556666666666665555442 223344444444445555
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++++|.+.++++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555444444444444444444444444444444444444432 22333444444444444444444444444
Q ss_pred HH
Q 014978 175 ME 176 (415)
Q Consensus 175 ~~ 176 (415)
+.
T Consensus 170 ~~ 171 (186)
T 3as5_A 170 AN 171 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.3e-12 Score=102.95 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655442 2344455555556666666666666666655555555555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655542 3344555555555666666666666665555542 3344555555555555555555555
Q ss_pred HHHHHHHc
Q 014978 206 IWKKMMSL 213 (415)
Q Consensus 206 ~~~~~~~~ 213 (415)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555543
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=1.9e-10 Score=107.74 Aligned_cols=361 Identities=8% Similarity=-0.010 Sum_probs=208.9
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCc---HHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCc-
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKK---SAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQL- 96 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~- 96 (415)
.+.+.++.+..+|+.+...-| ....|...+..-.+.++ ++.+..+|++..... .+|++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 345677777777777777655 45566677777777777 777777777777643 126666676666555554443
Q ss_pred -------CcHHHHHHHHhhc--C--CCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 014978 97 -------DKVPQMLQELKKN--T--SPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYST-- 154 (415)
Q Consensus 97 -------~~a~~~~~~~~~~--~--~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 154 (415)
+...++|+..... . +.+...|...+..... .++++.+..+|++++......-..+|..
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~ 236 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYT 236 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2233556654432 1 2244566666655432 2345566666666664311111112211
Q ss_pred -----------------------------------------------------------------------HHHHHHhcC
Q 014978 155 -----------------------------------------------------------------------LTSLYIKME 163 (415)
Q Consensus 155 -----------------------------------------------------------------------l~~~~~~~~ 163 (415)
.+..--..+
T Consensus 237 ~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~ 316 (679)
T 4e6h_A 237 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316 (679)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCC
Confidence 110000000
Q ss_pred -------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH-HHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 164 -------LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL-RIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 164 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
..+.+..+|+++... ++-....|...+..+...|+.++|. ++|++.... .+.+...|...+......|++
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred ccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCH
Confidence 011122334444333 2334445555555556667777775 788777653 223444566667777778888
Q ss_pred HHHHHHHHHHHhcc---------CCCC------------CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 236 EKAENIYDEWESIS---------GTGD------------PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 236 ~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
+.|..+|+.+.+.. ..|+ ..+|...+....+.|+.+.|..+|.+.++....+....|..
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~ 474 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888888776531 0121 23566667777777888888888888876511122334443
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Q 014978 295 LTWGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTY 370 (415)
Q Consensus 295 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 370 (415)
.+..-.+. ++.+.|..+|+.+++ ..+-+...+...+......|+.+.|+.+|++.....+. ....|...+..-
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk---~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLK---YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333333 447888888888877 24445666667777777788888888888888876663 346788888888
Q ss_pred HhcCCC--cHHHHHHHHhCC
Q 014978 371 AKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 371 ~~~g~~--a~~~~~~m~~~~ 388 (415)
.+.|+. +..+.+++.+.-
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 888887 366667666653
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2.5e-11 Score=107.23 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=157.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCC----HhHHHHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPL-----PYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD----VVTYNLW 120 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l 120 (415)
...+...|++++|...+++..... +++.. ++..+...+...|++++|...+++.... ..++ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455666666666666655432 11111 2344445555666666666666665432 1111 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHHHH
Q 014978 121 LAACASQNDKETAEKAFLELKKT----KID--P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR----KNRVAYSS 189 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 189 (415)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66677777777777777766542 211 2 2335556677777778888887777776653211 12345666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccCh-hhHH-----HHHHHHHhcCChHHHHHHHHHHHhccCCCC---CchHHHH
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYT-----CVISSLVKLGEFEKAENIYDEWESISGTGD---PRVPNIL 260 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 260 (415)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 777777788888888888877654222211 1111 223346678888888888877655332111 1134566
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 261 LAAYINRNQLEMAESFYNRLVTK----GIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+...|++++|...++..... |..++. ..+..+...+...|+.++|...++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77788888888888888876542 211122 2555667778888999999999888876
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=6.8e-12 Score=106.68 Aligned_cols=194 Identities=8% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-C----hhhHHHHHH
Q 014978 158 LYIKMELPEKAATTLKEMEKR----TCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-N----DAEYTCVIS 227 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~ 227 (415)
.|...|++++|...|++.... |-+++ ..+|+.+..+|...|++++|+..+++..+..... + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666655555432 11111 3455566666666666666666666555432111 1 224556666
Q ss_pred HHHhc-CChHHHHHHHHHHHhccCCC-C----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH------hHHHHH
Q 014978 228 SLVKL-GEFEKAENIYDEWESISGTG-D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWELL 295 (415)
Q Consensus 228 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l 295 (415)
.|... |++++|...+++..+..... + ..++..+...+...|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 77777776666665432111 1 234566666777777777777777776664322111 135556
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCH------HHHHHHHHHHH--HcCChhHHHHHHHHHHHc
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDH------RLITAAYNKLE--EQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 355 (415)
..++...|++++|...|++++. +.|+. ..+..++.++. ..+++++|...|+.+...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS----EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC----C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 6666777777777777777655 23321 12333444443 234566666666555443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.2e-12 Score=124.11 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+..|.+..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888888888888888888888887764 33466777788888888888888888888777777778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
+...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888887764 4456678888888888888888888888887763 34567788888888888888888
Q ss_pred HHHHHHHHH
Q 014978 204 LRIWKKMMS 212 (415)
Q Consensus 204 ~~~~~~~~~ 212 (415)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777655
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.1e-11 Score=101.29 Aligned_cols=210 Identities=11% Similarity=-0.024 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (415)
+.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34668888999999999999999999999998753377888888999999999999999999999886543 55678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCCC-------chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhHHHHH
Q 014978 226 ISSLVKLGEFEKAENIYDEWESISGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWELL 295 (415)
Q Consensus 226 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 295 (415)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++.++. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998865 3344 45777888889999999999999999985 455 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
...|...| ...++++... ...+...+.... ....+.+++|...+++..+..|.+..+...+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77775544 4445555551 233444444443 3345678999999999999998887776665443
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=2.7e-10 Score=106.82 Aligned_cols=357 Identities=9% Similarity=-0.017 Sum_probs=233.4
Q ss_pred hHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---cCcHHHHH
Q 014978 28 TRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ---LDKVPQML 103 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 103 (415)
..+.+..|+......| |..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3344555666555555 8899999999999999999999999999987 45677788888888888888 99999999
Q ss_pred HHHhhcC--CCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------
Q 014978 104 QELKKNT--SPDVVTYNLWLAACASQNDK--------ETAEKAFLELKK-TKI-DPD-WISYSTLTSLYIK--------- 161 (415)
Q Consensus 104 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~~--------- 161 (415)
++..... +|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998886 48999999998877776654 334577777664 365 454 4577777665432
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHH---------------------------------------------
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYS---SLLSL--------------------------------------------- 193 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~--------------------------------------------- 193 (415)
.++++.+.++|+.+.......-..+|. .+...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 334667777777776421110111221 11111
Q ss_pred -------------------------HHcCC-------ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHH-H
Q 014978 194 -------------------------YTNMG-------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE-N 240 (415)
Q Consensus 194 -------------------------~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~ 240 (415)
--..+ ..+.+..+|++++... +-....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 00000 0011223344443331 113344555555566678888886 8
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---------CCC------------HhHHHHHHHHH
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---------KPC------------YTTWELLTWGY 299 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~ 299 (415)
+++...... +.+...|...+....+.|+++.|..+|+.++.... .|+ ..+|...+...
T Consensus 366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 888887653 44555667777888888889999998888875310 132 23577777777
Q ss_pred HhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--
Q 014978 300 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM-- 376 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 376 (415)
.+.|+.+.|..+|.+++. ....+....|...+..-.+. ++.+.|..+|+...+.-+.+...|...+......|+.
T Consensus 445 rR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 788888999999998887 21122334444333333333 4588999999988888666778888888888888877
Q ss_pred cHHHHHHHHhCCC
Q 014978 377 PLIIVERMQKDNV 389 (415)
Q Consensus 377 a~~~~~~m~~~~~ 389 (415)
+..+|++.....-
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 5778887766554
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=6.2e-12 Score=111.30 Aligned_cols=293 Identities=10% Similarity=0.001 Sum_probs=203.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCC------CCcchHHHHHHHH--HhcCcHH---------HHHHHHHHHHhcCCCCCc---
Q 014978 21 AQAQALQTRARENFFENLPDKM------RGPDTCSALLHSY--VQNKKSA---------EAEALMEKMSECGFLKCP--- 80 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~li~~~--~~~~~~~---------~a~~~~~~~~~~~~~~~~--- 80 (415)
.....+++++|.++++++.... ++...|-.++..- .-.+.+. ...+.++.+.....+.+.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 4478999999999998765431 2233344443321 1112222 222566665442211111
Q ss_pred -ccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---CC-
Q 014978 81 -LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSP----DVVTYNLWLAACASQNDKETAEKAFLELKKTK--I---DP- 147 (415)
Q Consensus 81 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~---~~- 147 (415)
..+......+...|++++|+..|++..+. ..+ ...++..+..++...|+++.|...+++..+.. . .+
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 12233445677899999999999998764 112 24578889999999999999999999887531 1 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----ccccc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-----LFAKM 217 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 217 (415)
...+++.+..+|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|+..+++..+ ..+.
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~- 259 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL- 259 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence 2457888999999999999999999988753 111 1234678899999999999999999999887 3333
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-C---CchHHHHHHHHHhcCc---HHHHHHHHHHHHhCCCCCC-H
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-D---PRVPNILLAAYINRNQ---LEMAESFYNRLVTKGIKPC-Y 289 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~ 289 (415)
...++..+...+.+.|++++|...+++..+..... + ...+..+...+...++ +.+|...++.. +..|+ .
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHH
Confidence 35678889999999999999999999988753221 1 2234555666667777 77777777652 22232 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..+..+...|...|++++|...|+++.+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4667888999999999999999999876
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=2.4e-12 Score=122.01 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=146.1
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..+|+.+..++.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456789999999999999999999999988888889999999999999999999999999998874 4467789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
|.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+..+. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999998864 446788999999999999999999999999886543 566888899999999999999
Q ss_pred HHHHHHHHh
Q 014978 239 ENIYDEWES 247 (415)
Q Consensus 239 ~~~~~~~~~ 247 (415)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=5.3e-12 Score=103.21 Aligned_cols=195 Identities=15% Similarity=0.021 Sum_probs=108.6
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++..+......+...|++++|++.|++..+...+++...+..+..++...|++++|+..|++..+..|.+..+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666666666666666666666666554224455555566666666666666666666665555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDW-------ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSL 193 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 193 (415)
+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 666666666666666666552 2233 34555666666666666666666666654 233 3445555555
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
+... +...++++...+.. +...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 5432 22333443333211 222232222 223445666777777666653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.44 E-value=7.1e-12 Score=105.83 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=113.7
Q ss_pred HhcCCcCcHHHHHHHHhhc--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKN--------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTL 155 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 155 (415)
...|++++|+..|++..+. .+....++..+..++...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888776542 2334567888888888999999999888888754 21 2234577888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc------cccc-Chhh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR------T-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL------FAKM-NDAE 221 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 221 (415)
..+|...|++++|.+.++++... . .+....++..+...+...|++++|...++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999998888887654 1 1223556778888888888888888888888765 1122 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=1.8e-11 Score=103.27 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=157.4
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------TC-RKNRVAYSSL 190 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 190 (415)
...|++++|..++++..+. ..+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777776542 22334568889999999999999999999998764 21 2235678889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcc-----c--ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------c-CCCCCch
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLF-----A--KMNDAEYTCVISSLVKLGEFEKAENIYDEWESI------S-GTGDPRV 256 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 256 (415)
...+...|++++|...++++.... . +....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987752 1 123457888899999999999999999988764 1 1123457
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHhcCC------HHHHHHHHHHhHhcccCC
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCY-TTWELLTWGYLKKGQ------MEKVLECFKKAIGSVRKW 322 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 322 (415)
+..+...|...|++++|..++++..+. ...+.. ..|..+...+...+. +..+...++.... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence 788899999999999999999988753 122322 233333333333332 2223333322211 11
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 323 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
+....++..+...|...|++++|...+++..+.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456788889999999999999999988754
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.9e-11 Score=98.30 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHH----------------HHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSA----------------LLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
..+..+..+.+.|++++|+..|+.+....| ++.+|.. +..++.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 356677888888888888888888877655 3444544 4444444444444444444444432
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+.+...+..+..++...|++++|+..|++..+..|.+..+|..+..++.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2233344444444444444444444444444444444444444444443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=1.9e-10 Score=97.71 Aligned_cols=234 Identities=9% Similarity=0.027 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-C-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISN-G-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140 (415)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (415)
+|.+++.+..+. .+++...| .+ +... + ++++|...|++. +..+...|++++|...|++.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 466677776665 22222223 22 2211 2 477888887776 44677889999999999888
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcC-CChHHHHHHHHH
Q 014978 141 KKT----KIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNM-GYKDEVLRIWKK 209 (415)
Q Consensus 141 ~~~----g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~ 209 (415)
.+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+.... .+ ..++..+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 654 32222 458889999999999999999999888753111 11 35788889999996 999999999999
Q ss_pred HHHccccc-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCcHHHHHHHHH
Q 014978 210 MMSLFAKM-N----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 210 ~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
..+..... + ..++..+...+...|++++|...|++..+..+..... .+..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88753321 1 3467888999999999999999999998865433221 46777888999999999999999
Q ss_pred HHHhCCCCCCHh------HHHHHHHHHH--hcCCHHHHHHHHHHhHh
Q 014978 279 RLVTKGIKPCYT------TWELLTWGYL--KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 279 ~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 317 (415)
+..+. .|+.. .+..++..+. ..+++++|+..|+.+..
T Consensus 224 ~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 224 EGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 98864 33321 2344555554 45678888888877644
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=1.2e-09 Score=91.15 Aligned_cols=242 Identities=11% Similarity=-0.035 Sum_probs=123.5
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
+-..-.|++..++.-..++... .+ ...-..+.+++...|++.... ..+|....+..+...+. .+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~--~~-~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~-~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV--TD-NTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD-TK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC--CC-HHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT-TT----
T ss_pred HHHHHhhHHHHHHHHHHhcCcc--ch-HHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc-cc----
Confidence 3344467777666633222110 11 112222346666666665421 12344434444444432 11
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
|+..|++..+.+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 34445555666677777777777777776655432 1244555666677777777777777777775
Q ss_pred Hccccc-----ChhhHHHHHHH--HHhcC--ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 212 SLFAKM-----NDAEYTCVISS--LVKLG--EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 212 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 23344444444 22223 666677777766543 23322223333356666666666666665443
Q ss_pred CC-----C---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 283 KG-----I---KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 283 ~~-----~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.- . .| |+.++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 0 12 34445444444444554 55666666655
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=9.5e-10 Score=91.80 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=139.5
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
+-..-.|.+..++.-..++.. ......-.-+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344456777776663322211 11122333344666666766531 11123333333333332 222
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666544 345555556667777777777777777776554431 134456666777777777777777777776
Q ss_pred hccCCC-----CCchHHHHHHHHH--hcC--cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 247 SISGTG-----DPRVPNILLAAYI--NRN--QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 247 ~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 2344444554422 233 677777777777654 34433444555567777777777777775544
Q ss_pred cccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 318 SVRK-------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 318 ~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.... -+.+..++..+|......|+ +|.++++++.+..|..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 1101 13345555555555555665 67777777777776654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=1.8e-11 Score=92.63 Aligned_cols=141 Identities=9% Similarity=-0.074 Sum_probs=88.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.+...|++++|+..++.+....| ++..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34456677777777777666544 34556666777777777777777777776654 33556666666777777777777
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA-FLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+..|++..+..|.+..+|..+..++.+.|++++|.+. +++..+.. |-++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777776666666666677777777777766554443 45555542 334455555555555444
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=2e-10 Score=84.87 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33334444444444444444443332 2223333334444444444444444444443332 222333333444444444
Q ss_pred ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
++++|...++++.+..+ .+...+..+...+...|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444433221 122333334444444444444444444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.5e-10 Score=96.67 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---CHhHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DVVTY 117 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 117 (415)
++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++.+..|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 33444455555555555555555555555432 111 233444445555555555555555555443221 12334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhC
Q 014978 118 NLWLAACAS--------QNDKETAEKAFLELKKT 143 (415)
Q Consensus 118 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 143 (415)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444444444 45555555555555443
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=9.1e-10 Score=91.88 Aligned_cols=191 Identities=10% Similarity=-0.066 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC-hhhHH
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN-DAEYT 223 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~ 223 (415)
...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|+..|++..+..+. |. ...+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344444444555555555555555554432 112 334444555555555555555555555543221 11 12334
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 014978 224 CVISSLVK--------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 295 (415)
Q Consensus 224 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 295 (415)
.+..++.. .|++++|...|+++.+..+. +......+.... .+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------------~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------------ELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------------HHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------------HHHHH----HHHHHHHH
Confidence 44444444 55555555555555544211 222221111100 00000 00113445
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCC
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 359 (415)
...|.+.|++++|+..|+++++...........+..+..+|... |++++|...|+++.+..|.+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 55666666677777766666652111111234555555666544 66677777777777666654
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=5.4e-11 Score=92.85 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YI 91 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 91 (415)
..+..+..+.+.|++++|+..|+.+....| ++.++..+...+...|++++|+..+++..... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 356778888999999999999999988766 57888999999999999999999999887654 443333222212 22
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
..+....|+..+++..+..|.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 33344567888888877777888888889999999999999999999888774222 34578888888888888888888
Q ss_pred HHHHHHh
Q 014978 171 TLKEMEK 177 (415)
Q Consensus 171 ~~~~~~~ 177 (415)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=1.5e-10 Score=85.53 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+...|++++|..+++++.+..+.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+...|+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444433333344444444444444455555555554444432 2233444444455555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555544432 22344444455555555555555555555444
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=1.1e-08 Score=86.19 Aligned_cols=235 Identities=8% Similarity=0.020 Sum_probs=128.0
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQN--DKETAEKAFLELKKTKIDPDWISYSTLTSLY----IKM---ELPEK 167 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~---~~~~~ 167 (415)
++|+++++.+....|.+..+|+.-..++...+ ++++++.+++.+.... +-+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 35666666655555555556666555555555 5555555555555543 22333444333322 222 34445
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ..++.+.++.+.+
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~i~ 174 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHHHH
Confidence 555554444432 234444444444444444444 0044444444444
Q ss_pred ccCCCCCchHHHHHHHHHhcCc------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHhHhccc
Q 014978 248 ISGTGDPRVPNILLAAYINRNQ------LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK-VLECFKKAIGSVR 320 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 320 (415)
.+ +.|...|+.-...+.+.+. ++++++.++.++...+ -|...|+.+...+.+.|+... +..+..+..+...
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 43 2244444444333333333 6677777777776543 266677777777777666433 4456665554211
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCHHHHHHHHH
Q 014978 321 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLR 368 (415)
Q Consensus 321 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 368 (415)
.-..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|+..++
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 1244667777888888888888888888888876 57766666765543
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=2.6e-10 Score=92.89 Aligned_cols=180 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----cHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNH 85 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 85 (415)
..+..+..+.+.|++++|+..|+.+....|+. .++..+..++.+.|++++|+..|+++.+.. |+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence 46778889999999999999999988776642 578888999999999999999999998864 4432 3444
Q ss_pred HHHHHHh------------------cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014978 86 MLNLYIS------------------NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 147 (415)
Q Consensus 86 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (415)
+..++.. .|++++|+..|+++.+..|.+..++........ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 4444443 455666666666666655555444332211100 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-H---HHHHHHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-R---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
......+...|.+.|++++|...|+++.+.. |+ . ..+..+..++.+.|++++|.+.++.+...++
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112356778888999999999999988762 33 2 4577888999999999999999998877654
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=6.1e-10 Score=89.37 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCc
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 269 (415)
+..++.+.|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 667777777777777777777765433 55567777777777777777777777777664 3356666666666655443
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 270 --LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 270 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
...+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHH
Confidence 3344444444432 122222333445556667777788888877765 5666554433
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=2.5e-11 Score=115.47 Aligned_cols=170 Identities=10% Similarity=-0.045 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHH--------hcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 59 KKSAEAEALMEKMS--------ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 59 ~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|+++.+..|.+...|..+..++...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 56666666666665 322 234455666666666666666666666666655566666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
++|...|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|++.|+++
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666666666553 3345566666666666666666 66666666553 334556666666666666666666666666
Q ss_pred HHcccccChhhHHHHHHHHHhcC
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
.+..+. +...+..+..++...+
T Consensus 561 l~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 561 PPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp CTTSTT-HHHHHHHHHHHTC---
T ss_pred cccCcc-cHHHHHHHHHHHHccC
Confidence 553221 2334444555544433
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=1.4e-10 Score=110.34 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=152.8
Q ss_pred HhcCCcCcHHHHHHHHh--------hcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 91 ISNGQLDKVPQMLQELK--------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...|++++|++.+++.. +..+.+...+..+..++...|++++|...|+++.+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999988 5578888999999999999999999999999999874 55778999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+..+. +...+..+..++...|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999874 4467888999999999999999 9999999986543 5678889999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCc--------HHHHHHHHHHH
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQ--------LEMAESFYNRL 280 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~ 280 (415)
+++.+.+ +.+...+..+..++...++ +++|.+.+..+
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9987754 2246677777777766443 44555554443
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=6.1e-10 Score=95.32 Aligned_cols=199 Identities=9% Similarity=-0.014 Sum_probs=112.1
Q ss_pred HhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 24 QALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
..|++++|.++++++.+..+.. + +...++++.|...|.+. ...|...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 4677888888887766542321 0 11146777777777654 34566677777777777
Q ss_pred HHHhhc---CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 104 QELKKN---TS---PDVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 104 ~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+..+. .. .-..+|+.+..+|...|++++|...|++..+. |-.. ...++..+..+|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 765432 11 11345666777777777777777777765533 1110 12355566666666 7777777666
Q ss_pred HHHHhcCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHH
Q 014978 173 KEMEKRTCRK-----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 173 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
++........ ...++..+...+...|++++|+..|++........+ ...+..++.++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655421000 124455666666666666666666666655321110 113444444555556666666666
Q ss_pred HHHH
Q 014978 243 DEWE 246 (415)
Q Consensus 243 ~~~~ 246 (415)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6655
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=6.2e-11 Score=89.71 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
|...+...|++++|++.++...... +.+...+-.+...|.+.|++++|++.|++..+..|.+..+|..+..++.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445556677777777777766542 223445556777777778888888888777776777777777777777777788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT-LKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
++|...|++..+.. +-+..++..+..+|.+.|++++|.+. +++..+.. |-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 77777777777663 34566777777777777777665544 46666552 3355666666666555553
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.23 E-value=6.2e-08 Score=88.15 Aligned_cols=353 Identities=9% Similarity=0.021 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCc-HHHHHHHHHHHHhc-CC-CCCcccHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKK-SAEAEALMEKMSEC-GF-LKCPLPYNHMLNL 89 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~ 89 (415)
..++..++.....|+++.+..+|+......|+...|...+....+.++ .+....+|+..... |. +++...|...+..
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 346677777777799999999999999988999999998888877663 45677888887754 42 2355667776665
Q ss_pred HH----hcCCcCcHHHHHHHHhhcCCCC--HhHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhCCCCCCHH
Q 014978 90 YI----SNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACAS-------------QNDKETAEKAFLELKKTKIDPDWI 150 (415)
Q Consensus 90 ~~----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~ 150 (415)
+. .+++.+.+..+|++.... |+. ...|......-.. .+.+..|..+++.+...--..+..
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 43 245677899999998873 332 1233333222111 122333444444443210011333
Q ss_pred HHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH
Q 014978 151 SYSTLTSLYIKME--L-----PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 223 (415)
Q Consensus 151 ~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (415)
.|...+..-...+ - .+.+..+|+++... ++.+...|...+..+.+.|+++.|..++++.... |....+.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~ 249 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence 5555554422211 1 34567889998876 3567888998899999999999999999999987 4433221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccC------------CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhH
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESISG------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 291 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 291 (415)
. .|....+.++. ++.+.+.-. ......|...+....+.++.+.|..+|++. .. ..++...
T Consensus 250 ~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 250 L---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp H---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred H---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 1 22222222222 222222100 001245666777777788899999999999 32 1234455
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 292 WELLTWGYLK-KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 292 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
|......-.. .++.+.|..+|+.+++. .+-+...+...+....+.|+.+.|..+|+++ ......|...+..-
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE 394 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5433322222 34799999999999883 3334556666777778899999999999997 23568899999888
Q ss_pred HhcCCCc--HHHHHHHH
Q 014978 371 AKAGKMP--LIIVERMQ 385 (415)
Q Consensus 371 ~~~g~~a--~~~~~~m~ 385 (415)
...|+.. ..++++..
T Consensus 395 ~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 8889873 45566554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=2.2e-10 Score=107.10 Aligned_cols=153 Identities=7% Similarity=-0.043 Sum_probs=121.4
Q ss_pred hhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 25 ALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
.|++++|++.|+++....| +..+|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999988766 57889999999999999999999999999875 445778888999999999999999999
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 014978 104 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM---ELPEKAATTLKEMEKRT 179 (415)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 179 (415)
++..+..+.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99988888889999999999999999999999999999874 45677889999999999 99999999999998874
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=1.6e-08 Score=85.34 Aligned_cols=220 Identities=12% Similarity=0.061 Sum_probs=147.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC--CcCcHHHHHHHHhhcCCCCHhHHHHHHHHH----Hhc---CC
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG--QLDKVPQMLQELKKNTSPDVVTYNLWLAAC----ASQ---ND 129 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 129 (415)
...++|+++++.++..+ +-+..+|+.-..++...+ +++++++.++.+....|.+..+|+.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 33457777777777754 234455666666676666 777778877777776777777777666555 444 67
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC------hH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE--KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY------KD 201 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 201 (415)
+++++.+++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 778888888877764 456667777777777777777 7888888887764 3466677766666666665 67
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK-AENIYDEWESIS--GTGDPRVPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
++++.+++++...+. |...|+-+...+.+.|.... +..+..++.+.+ ...++..+..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777776544 66667766666666666333 444555544322 12355566777777777777777777777
Q ss_pred HHHh
Q 014978 279 RLVT 282 (415)
Q Consensus 279 ~~~~ 282 (415)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=1.3e-09 Score=101.83 Aligned_cols=152 Identities=7% Similarity=-0.089 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555444432 12234444444455555555555555555444444444455555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHc
Q 014978 139 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM---GYKDEVLRIWKKMMSL 213 (415)
Q Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 213 (415)
+..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 544442 2233444445555555555555555555544432 22334444444444444 4455555555544443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=4.3e-09 Score=85.60 Aligned_cols=189 Identities=12% Similarity=-0.012 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh--hhHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYT 223 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 223 (415)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667788889999999999999999875311 1 1356777889999999999999999999886543221 1344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-H-----------
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-T----------- 291 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~----------- 291 (415)
.+..++...|.. .+ ..+..+...+...|+.++|...|+++++.. |+.. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 445555432110 00 001111222223344444444444444431 2111 1
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 292 ------WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 292 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
...+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+|.+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 124556778889999999999998873 233 2567788888999999999999999888877764
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=3.6e-10 Score=88.11 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKM 162 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~ 162 (415)
..+...+...|++++|...|++..+..|.+...+..+..++...|++++|...+++..+.. |+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3344445555555555555555444444455555555555555555555555555544432 222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+...+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223444444444431 2234444445555555555555555555554433221 123444444455555555555555
Q ss_pred HHHH
Q 014978 242 YDEW 245 (415)
Q Consensus 242 ~~~~ 245 (415)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=2.8e-10 Score=96.29 Aligned_cols=167 Identities=8% Similarity=0.010 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++....|............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455566666666677777777777666653 23445566666666667777777776666654433222222233333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCChHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 202 (415)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666666666666553 445556666666677777777777777666665211 114456666666666677666
Q ss_pred HHHHHHHHHH
Q 014978 203 VLRIWKKMMS 212 (415)
Q Consensus 203 a~~~~~~~~~ 212 (415)
|...|++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=1.8e-09 Score=92.38 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 137 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (415)
.|++++|.+++++..+.. +. .+ +...++++.|...|.+. +..|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~-----~~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT-----SF---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC-----CS---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc-----cc---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 456666666666655432 11 01 11134555555555443 34455666666666666
Q ss_pred HHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 138 LELKKTK----IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---RKN--RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 138 ~~~~~~g----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.+..+.. -.+ -..+|+.+..+|.+.|++++|+..|++..+.-. .+. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6554321 000 123455555556666666666666655543210 011 2334445555554 5555555555
Q ss_pred HHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 208 KKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 208 ~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
++..+.....+ ..++..+...+...|++++|...|++..
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544321100 1233344444444444444444444443
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=6.2e-09 Score=83.70 Aligned_cols=176 Identities=11% Similarity=-0.016 Sum_probs=93.6
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----LPEKAATTLK 173 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 173 (415)
+|++.|++..+ ..+..++..+...+...+++++|..+|++..+.| +...+..|...|.. + ++++|.++|+
T Consensus 4 eA~~~~~~aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 34455555443 2455556666666666666666666666665554 34455555555555 4 5666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHh----cCChHHHHHHHHH
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVK----LGEFEKAENIYDE 244 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 244 (415)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 55666666666666554321 013445555555555 4556666666665
Q ss_pred HHhccCCCCCchHHHHHHHHHhc-C-----cHHHHHHHHHHHHhCC
Q 014978 245 WESISGTGDPRVPNILLAAYINR-N-----QLEMAESFYNRLVTKG 284 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 284 (415)
..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5543 12333444555555432 2 5556666665555544
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.1e-09 Score=92.58 Aligned_cols=168 Identities=10% Similarity=-0.004 Sum_probs=115.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
.|.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 46666677777777778888888888888777663 445567777777788888888888888777665 344333222
Q ss_pred -HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhc
Q 014978 190 -LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINR 267 (415)
Q Consensus 190 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 267 (415)
....+...++.++|...+++.....+. +...+..+...+...|++++|...+.++.+..+.. +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 223355666777777777777775433 55667777777778888888888888777764221 255677777778778
Q ss_pred CcHHHHHHHHHHHH
Q 014978 268 NQLEMAESFYNRLV 281 (415)
Q Consensus 268 g~~~~a~~~~~~~~ 281 (415)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88777777776654
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=7.7e-09 Score=83.15 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----ChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG----YKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 207 (415)
+|.+.|++..+.| ++..+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666554 45556666666666666666666666666543 44455555555555 4 566666666
Q ss_pred HHHHHcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHh----cCcHHHHHHHHH
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGT-GDPRVPNILLAAYIN----RNQLEMAESFYN 278 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 278 (415)
++..+.+ +...+..+...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654433 33344444444443 44555555555544443210 013334444444444 334444444444
Q ss_pred HHHh
Q 014978 279 RLVT 282 (415)
Q Consensus 279 ~~~~ 282 (415)
+..+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=7.9e-08 Score=87.46 Aligned_cols=331 Identities=11% Similarity=0.027 Sum_probs=205.4
Q ss_pred Hhh-hhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-cCcHHH
Q 014978 24 QAL-QTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQ 101 (415)
Q Consensus 24 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 101 (415)
+.| +++.|..+|+.+...-|. |+++.+..+|+..... .|+...|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 455 377788888877665454 8899999999999985 4799999998887777663 467788
Q ss_pred HHHHHhhc---CCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------
Q 014978 102 MLQELKKN---TSPDVVTYNLWLAACA----SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK------------- 161 (415)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~------------- 161 (415)
+|+..... .+.+...|...+..+. ..++++.+..+|++.+......-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887764 3567788888888765 356788999999999975321111223222221111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC--C-----hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG--Y-----KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
.+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++....+ .+...|...+..+...|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 1223334444444443200113446666665543321 1 3457789999887643 356678878888889999
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC---------CCCC---CHhHHHHHHHHHHhc
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK---------GIKP---CYTTWELLTWGYLKK 302 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~p---~~~~~~~l~~~~~~~ 302 (415)
.+.|..+++..... +.+...+. .|....+.++. ++.+.+. +..+ ....|...+....+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 99999999999987 33333332 22222111221 2222211 0001 124567777777778
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLI 379 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~ 379 (415)
++.+.|..+|.++ .. . ..+...|......-.. .++.+.|..+|+...+..+.++..|...++...+.|+. +..
T Consensus 300 ~~~~~AR~i~~~A-~~-~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HCHHHHHHHHHHH-TT-S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999 41 2 2355555443333223 34699999999999998776777788888877888876 355
Q ss_pred HHHHH
Q 014978 380 IVERM 384 (415)
Q Consensus 380 ~~~~m 384 (415)
+|++.
T Consensus 376 l~er~ 380 (493)
T 2uy1_A 376 LFKRL 380 (493)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55553
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=4.9e-09 Score=84.36 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
.+..+..+...|++++|++.|+.+.. |++.+|..+...+...|++++|++.|++..+.. +.+...|..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 46778888899999999999998864 678889999999999999999999999988765 445677888888899999
Q ss_pred CcCcHHHHHHHHhhcCCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 95 QLDKVPQMLQELKKNTSPDV----------------VTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
++++|++.|++..+..+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999998887655544 778888888888888888888888888763
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.1e-09 Score=88.56 Aligned_cols=194 Identities=9% Similarity=-0.006 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHH-------HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSAL-------LHSYVQNKKSAEAEALMEKMSECGFLKCPL---- 81 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 81 (415)
..|..+..+ +.++...|.+.|..+....| ....|..+ ...+...++..+++..+..-.+ +.|+..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~ 85 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEE
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhh
Confidence 345555554 57777777777777777666 35667666 3444444444444444443332 222110
Q ss_pred ------------------cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 82 ------------------PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 82 ------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.+..+...+...|++++|.++|+.+....|.+. ....+...+.+.+++++|+..|+.....
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 111233444555555555555555443322223 4444444555555555555555433322
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 KIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
. .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 110 12344445555555555555555555543221122 12333344444555555555555555554
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=2e-09 Score=80.98 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=75.6
Q ss_pred HHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 34 FFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 34 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.|+.+....| ++.++..+...+.+.|++++|+..|++..... |.+...|..+..++...|++++|+..|++..+..|.
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444444 45566777777777777777777777777654 345666777777777777777777777777666666
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|..+..++...|++++|...|++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777765
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=2.6e-07 Score=78.80 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=132.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc-
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ- 127 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 127 (415)
.+-....+.+..++|++++++++..+ +.+..+|+.--.++...| .+++++++++.+....|.+..+|+.-..++.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 33333445566678999999988865 335566777777777777 488999999998888888888998888887777
Q ss_pred C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 128 N-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE--------KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 128 ~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
+ ++++++.+++++.+.. +-|...|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 8888999999988774 456677776666666655555 8888888888774 457778888877777777
Q ss_pred C-------hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 199 Y-------KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 199 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
. ++++++.+++++...+. |...|+-+-..+.+.|.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 5 57888888888776543 56667666555555554
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=2.7e-08 Score=79.95 Aligned_cols=127 Identities=11% Similarity=-0.061 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+...|++++|++.|++.. .|+...|..+..++...|++++|+..|++..+..+.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556677778888888888887663 45667788888888888888888888888777777778888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 127 QNDKETAEKAFLELKKTKIDPD----------------WISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888887753 222 256777777788888888888888877765
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=4.7e-07 Score=77.17 Aligned_cols=256 Identities=10% Similarity=0.034 Sum_probs=134.7
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM-E-LPEKA 168 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a 168 (415)
..+..++|+++++.+....|.+..+|+.--.++...+ .+++++.+++.+.... +-+..+|+.-..++.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444457777777777777777777777777777777 4777777777777664 44556666666666655 5 67777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHHcccccChhhHHHHHHHHHhcCC------
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD--------EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE------ 234 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 234 (415)
+++++.+.+.. +.|..+|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 77777777653 345666665555544444444 666666666665433 44455555544444443
Q ss_pred -hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH--HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 235 -FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM--AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 235 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
++++.+.+++..... +-|...|+.+-..+.+.|+... ...++ ...+. .+ +. .......+
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~----~~-~~---------~~~~~~~~ 284 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTAS----KL-NP---------DIETVEAF 284 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC---------------------------
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccc----cc-cc---------cchhHHHH
Confidence 334444444444332 2233344433333333322100 00000 00000 00 00 01122222
Q ss_pred HHHhHhcc---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCHHHHHHHHH
Q 014978 312 FKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLR 368 (415)
Q Consensus 312 ~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 368 (415)
...+.... ..-.+++..+..++..|...|+.++|.++++.+. +.+|....-|+-.++
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 22222210 0114566777788888888888888888888876 445555555655544
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=3.2e-09 Score=77.46 Aligned_cols=110 Identities=7% Similarity=-0.006 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+..|.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3456666677777777777777777776654 345566666777777777777777777776666666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (415)
...|++++|.+.|++..+.. |.+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 77777777777777777653 33444444443
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=3.2e-07 Score=77.81 Aligned_cols=164 Identities=10% Similarity=-0.042 Sum_probs=101.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHccc-ccChh----hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-----chHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFA-KMNDA----EYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-----RVPNIL 260 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 260 (415)
+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+.....+. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 11111 2223455555566777777777777653222111 146777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh----C-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc--CCCCC-HHHHHH
Q 014978 261 LAAYINRNQLEMAESFYNRLVT----K-GIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPD-HRLITA 331 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~----~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~-~~~~~~ 331 (415)
...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..++++++... +..+. ...+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 1111 123677778888888888888888888776321 11122 567778
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHHH
Q 014978 332 AYNKLEEQGD-IDGAEHLLVTLRN 354 (415)
Q Consensus 332 l~~~~~~~g~-~~~a~~~~~~~~~ 354 (415)
+..++.+.|+ +++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877754
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=3.8e-08 Score=71.65 Aligned_cols=109 Identities=10% Similarity=-0.028 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+......|.+.|++++|.+.|++.++... .+...|..+..+|.+.|++++|+..++++++. -+.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHHH
Confidence 455566677777777777777777776532 25667777777777888888888888877762 23456677777778
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
+...|++++|...|++..+..|.+..++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 888888888888888888877777776666544
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=1.5e-08 Score=78.85 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKMELP--EK 167 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~--~~ 167 (415)
...|++++|...++...+..|.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777888888887776667777788888888888888888888888877663 3456667777777 6677777 88
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
|...++++.+.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888877663 3456667777777888888888888888877753
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.94 E-value=1.4e-09 Score=94.23 Aligned_cols=156 Identities=8% Similarity=-0.040 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHH
Q 014978 26 LQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 104 (415)
Q Consensus 26 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (415)
+++++|+..|+......| +...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHH---
Confidence 344555555555444333 45667777777888888888888888777653 332100 0000000
Q ss_pred HHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 105 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
. .+....+|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+.. +.+.
T Consensus 191 -~---~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 191 -A---QALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp -H---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred -H---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 00013344455555555555555555555554442 2344445555555555555555555555554442 2234
Q ss_pred HHHHHHHHHHHcCCChHHH
Q 014978 185 VAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a 203 (415)
..+..+..++...|+.+++
T Consensus 265 ~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=2.2e-08 Score=76.79 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..|.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555432 22344444455555555555555555555544444445555555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 014978 127 QNDKETAEKAFLELKKT 143 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~ 143 (415)
.|++++|...+++..+.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555555444
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=1e-07 Score=80.88 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=77.0
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHh------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVV------TYNLWLAACASQNDKETAEKAFLELKKTKID-PD----WISYSTL 155 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 155 (415)
+..+...|++++|..++++..+..+.+.. .+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44455566666666666665543211111 2223445555555666666666666543211 11 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc----cC-hhhHHH
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR-----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MN-DAEYTC 224 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-~~~~~~ 224 (415)
..+|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|+..+++..+.... +. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666555421 1011 1224555555555666666666655555443111 11 234455
Q ss_pred HHHHHHhcCC-hHHHHHHHHHH
Q 014978 225 VISSLVKLGE-FEKAENIYDEW 245 (415)
Q Consensus 225 l~~~~~~~g~-~~~a~~~~~~~ 245 (415)
+..++...|+ +++|...+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555553 35555555544
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.8e-08 Score=84.83 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=111.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 355667777777777888888888887777663 3366677777777778888888888887777653 34566677777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 271 (415)
.++...|++++|...|++..+..+. +...+...+....+. ..+. .+........+.+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 7777888888888888777665432 111111111111111 1111 1111222223334444333322 2 257777
Q ss_pred HHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhc-CCHHHHHHHHHHhHh
Q 014978 272 MAESFYNRLVTKGIKPCYT-TWELLTWGYLKK-GQMEKVLECFKKAIG 317 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 317 (415)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766654 34332 222332333333 556677777776654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=3.9e-09 Score=82.24 Aligned_cols=120 Identities=10% Similarity=0.070 Sum_probs=83.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCc--Cc
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YISNGQL--DK 98 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 98 (415)
...|++++|+..|+.+....| ++.+|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777777666555 55677777777778888888888888777654 2345566666666 6677777 77
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
|...|++..+..|.+...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777666667777777777777778888888777777766
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=4.9e-08 Score=74.86 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (415)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44555555555566666666555555442 2344555555555556666666666665555542 334455555555666
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhH--HHHHHHHHhcCChHHHHHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEY--TCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
..|++++|...++++.+..+. +...+ ...+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666665554322 22222 22222344556666666665544
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=2.1e-08 Score=84.49 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+..+. +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356678889999999999999999999999873 447888999999999999999999999999886433 566888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
.++...|++++|...|+...+.++. +...+...+....+. ..+.. +.........++......+ ..+ ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999998775422 221222222222221 11122 2222223233344444433 333 368999
Q ss_pred HHHHHHHHhHhcccCCCCCHH-HHHHHHHHHHHc-CChhHHHHHHHHHHHc
Q 014978 307 KVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQ-GDIDGAEHLLVTLRNA 355 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 355 (415)
+|++.++.+.+ ..|+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999998876 455544 334444444444 6788999999887653
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=3.2e-08 Score=78.80 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+..+...+...|++++|.+.+++
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=2.7e-08 Score=74.81 Aligned_cols=110 Identities=12% Similarity=-0.109 Sum_probs=68.9
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
.|+++....|.+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444444455566666666667777777777776666553 3455566666666667777777777776666553 3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.+...+..+..++...|++++|...|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666666666777777777777666654
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=1.4e-07 Score=68.18 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++... .+.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 455566666677777777777777766542 124556667777777777777777777777662 2345666777777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
.+...|++++|...++++.+..+.+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 777777777777777777777776666666666655543
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1.3e-08 Score=76.46 Aligned_cols=101 Identities=10% Similarity=-0.095 Sum_probs=65.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 4455566666666666777777777776666653 3455566666666666777777777776666653 3345566666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666667777777776666664
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=4.5e-08 Score=70.83 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
.+|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+.+..++..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233344444444445555555555555444443444444444444444
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 014978 126 SQNDKETAEKAFLELKKT 143 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~ 143 (415)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555444443
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.87 E-value=3.8e-06 Score=71.29 Aligned_cols=251 Identities=10% Similarity=0.060 Sum_probs=137.6
Q ss_pred HhcCCcC-cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014978 91 ISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 91 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
.+.|.++ +|+++++.+....|.+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4466655 67888888877777777777766555544443 456666666666553 34555666555555
Q ss_pred HhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 160 IKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 160 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
.+.+ .+++++.+++.+.+.. +-|..+|+.-.-++...|. ++++++.++++++..+. |...|+.....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 5555 3566666666666653 3455566655555555555 36666666666665433 4445554444433331100
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-----------CCH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-----------GQM 305 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~ 305 (415)
.+ ++ ..-...+.++++.+.+...+...+ -|...|+.+-..+.+. +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 000001335556666665555321 1444454443333333 346
Q ss_pred HHHHHHHHHhHhcccCCCCCH-HHHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 306 EKVLECFKKAIGSVRKWVPDH-RLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
+++++.++++.+ ..|+. ..+..++ .+....|..+++...+.++.+.+|....-|..+...+
T Consensus 255 ~~el~~~~elle----~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 255 QSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 778888888877 34443 2222221 1122356778888899999988888766676665544
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=3.2e-07 Score=77.80 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=101.4
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--H
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV------VTYNLWLAACASQNDKETAEKAFLELKKTKI---DPD--W 149 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~ 149 (415)
..+...+..+...|++++|.+.+.+..+..+... ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455566666777777777777776655422222 2234455666677777777777777664321 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-----C
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKN-----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----N 218 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 218 (415)
.+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..+++..+..... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777777777777777777777776521 00111 1466777777777777777777777766542111 1
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 014978 219 DAEYTCVISSLVKLGEFEKA-ENIYDEWE 246 (415)
Q Consensus 219 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 246 (415)
..+|..+..++...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34566777777777777777 66566544
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=5.7e-08 Score=71.29 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.+..+..++...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333444433333333321 1223333333333444444444444444333
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=5.9e-09 Score=78.44 Aligned_cols=99 Identities=8% Similarity=-0.083 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|+..|++.....|.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34455555566666666666666666665543 23445555555566666666666666666555555555566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 014978 124 CASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666655544
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=7e-08 Score=70.81 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..++++++. .+.+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHH
Confidence 44566667777777777777777777776432 25567777777777788888888888887762 234567777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
.++...|++++|...|++..+..+.+...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788888888888888888877777666777777777766553
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=7.8e-09 Score=89.50 Aligned_cols=151 Identities=9% Similarity=0.004 Sum_probs=95.4
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--------------WISYSTLTSL 158 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~l~~~ 158 (415)
.+++++|++.++......+.+...+..+...+.+.|++++|...|++..+...... ...|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555543332344567788888888888888888888888887631111 3566666777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..|+++.+..+. +...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766653 335566666666777777777777777766664332 444566666666666666665
Q ss_pred -HHHHHHH
Q 014978 239 -ENIYDEW 245 (415)
Q Consensus 239 -~~~~~~~ 245 (415)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344433
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=3.8e-08 Score=71.91 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|.+.+++..+..+.+...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344455555555555555555555555432 2233444444455555555555555555544444444445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555554442 223334444444444443
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=7e-07 Score=75.65 Aligned_cols=172 Identities=10% Similarity=-0.019 Sum_probs=130.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-----WISYSTLTSLYIKMELPEKAATTLKEMEKRTC---RK 182 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~ 182 (415)
+.....+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44567777788899999999999999998887642211 12345577778889999999999999875321 12
Q ss_pred C--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-cccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC--
Q 014978 183 N--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-- 252 (415)
Q Consensus 183 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 252 (415)
. ..+|+.+...|...|++++|+..+++..+.. ..|+ ..++..+...|...|++++|...+++..+.....
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 4578899999999999999999999987431 1122 2478889999999999999999999876542111
Q ss_pred ---CCchHHHHHHHHHhcCcHHHH-HHHHHHHHh
Q 014978 253 ---DPRVPNILLAAYINRNQLEMA-ESFYNRLVT 282 (415)
Q Consensus 253 ---~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 282 (415)
-..++..+..+|...|+.++| ...+++...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145778899999999999999 777887653
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=3.5e-08 Score=81.33 Aligned_cols=127 Identities=14% Similarity=-0.036 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHc
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTN 196 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 196 (415)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34445555555555555555554432 322244444445555555555555555333221 110 1234445555555
Q ss_pred CCChHHHHHHHHHHHHcccccC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555543221122 112333444455555555555555555543
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=2.6e-07 Score=67.32 Aligned_cols=118 Identities=11% Similarity=-0.037 Sum_probs=77.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++... .+.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHH
Confidence 345555666666666666666666666542 124556666666777777777777777777662 2334566667777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.+...|++++|...+++..+..+.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777666666777777777666653
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=1.4e-07 Score=75.08 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcCCC
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 199 (415)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456677777744444322 1234456666677777777777777777666541 111 123445566666677777
Q ss_pred hHHHHHHHHHHHHccc-cc-C----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFA-KM-N----DAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~-~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+++|...+++..+... .+ + ...+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777666554310 11 1 2235555556666666666666666554
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=1.6e-06 Score=73.63 Aligned_cols=162 Identities=7% Similarity=-0.019 Sum_probs=84.0
Q ss_pred HhhhhH-HHHHHHHhcCcCCCC-cchHHHHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 24 QALQTR-ARENFFENLPDKMRG-PDTCSALLHSYVQNKK----------SAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 24 ~~g~~~-~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
+.|.++ +|+.+++.+....|+ ..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344444 566666666665553 3344433333322222 455666666665543 334555555555555
Q ss_pred hcCC--cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 014978 92 SNGQ--LDKVPQMLQELKKNTSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKM------ 162 (415)
Q Consensus 92 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------ 162 (415)
..++ +++++.+++++.+..+.|..+|+.-.-++...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccc
Confidence 5553 4566666666665566666666666655555555 356666666666553 34455555544444433
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCHHHHH
Q 014978 163 --------ELPEKAATTLKEMEKRTCRKNRVAYS 188 (415)
Q Consensus 163 --------~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (415)
+.++++++.+....... |-|...|+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~ 231 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWF 231 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 23445555555555442 33444444
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=1.9e-08 Score=75.11 Aligned_cols=109 Identities=12% Similarity=-0.061 Sum_probs=77.3
Q ss_pred HHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 34 FFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 34 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.|+.+....| +...+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|+..|++.....|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555555444 44566667777777888888888888777654 345666777777777788888888888877776677
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...+..+..++...|++++|...|++..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777888888888888888888777655
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=8.3e-08 Score=71.58 Aligned_cols=101 Identities=12% Similarity=-0.070 Sum_probs=63.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3344555556666666666666666666666553 3455566666666666666666666666666553 3345556666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=1.1e-08 Score=81.28 Aligned_cols=142 Identities=8% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----------------ccH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPY 83 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~ 83 (415)
.....|+++.|.+.|+......+ ....+..+...+...|++++|++.|++..+.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 34456667777666664443322 34567777788888888888888888887643 1122 334
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..+..++...|++++|+..+++..+..+.+..++..+..++...|++++|...|++..+.. +.+...+..+..++...+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 4444444455555555555554444444444444445555555555555555554444432 223333444444443333
Q ss_pred C
Q 014978 164 L 164 (415)
Q Consensus 164 ~ 164 (415)
+
T Consensus 171 ~ 171 (198)
T 2fbn_A 171 E 171 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=1.8e-08 Score=80.05 Aligned_cols=145 Identities=14% Similarity=-0.057 Sum_probs=69.5
Q ss_pred HHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHH
Q 014978 89 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----------------ISY 152 (415)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~ 152 (415)
.....|+++++.+.++.-....+.....+..+...+...|++++|...|++..+.. +.+. ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 33444555666555543222223344556667777777777777777777776642 1111 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+..+. +...+..+..++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHH
Confidence 555555555555555555555555442 234444555555555555555555555555443221 233344444444333
Q ss_pred CChH
Q 014978 233 GEFE 236 (415)
Q Consensus 233 g~~~ 236 (415)
++..
T Consensus 170 ~~~~ 173 (198)
T 2fbn_A 170 KEAR 173 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=4.3e-07 Score=66.02 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=60.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445556666666666666666666666553 3345566666666666666666666666666553 3345556666666
Q ss_pred HHcCCChHHHHHHHHHHHHc
Q 014978 194 YTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~ 213 (415)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=4.5e-07 Score=64.70 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333344444444444444444443331 2233333444444444444444444444443331 1223333444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 014978 197 MGYKDEVLRIWKKMMS 212 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~ 212 (415)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444433
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=7.6e-07 Score=63.45 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+. .+.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 45556666667777777777777766542 124566666777777777777777777777662 23356667777777
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
+...|++++|...+++..+.++.+...+..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777776666655555443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=7.5e-07 Score=64.68 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+..+...+.+.|++++|...|++.++... .+...|..+..++.+.|++++|+..++++++. .+.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 344455555566666666666666555421 24455666666666666666666666666651 22345556666666
Q ss_pred HHHcCChhHHHHHHHHHHHcC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~ 356 (415)
+...|++++|...|+++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 666666666666666666655
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=2.7e-07 Score=67.24 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKN----RVAYSSL 190 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 190 (415)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444432 22333444444444444444444444444433210 000 1234444
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555554444
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=4e-07 Score=64.31 Aligned_cols=97 Identities=9% Similarity=-0.032 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLL 191 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 191 (415)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344444444444445555555444444432 2233344444444444455555554444444431 22 234444444
Q ss_pred HHHHcC-CChHHHHHHHHHHHH
Q 014978 192 SLYTNM-GYKDEVLRIWKKMMS 212 (415)
Q Consensus 192 ~~~~~~-~~~~~a~~~~~~~~~ 212 (415)
.++... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 455555544444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=2.6e-07 Score=65.29 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC--CHhHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWL 121 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 121 (415)
+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455555555556666666666665555543 223344445555555555555555555555544444 455555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 014978 122 AACASQ-NDKETAEKAFLELKKT 143 (415)
Q Consensus 122 ~~~~~~-~~~~~a~~~~~~~~~~ 143 (415)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=1.4e-06 Score=64.16 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3455566666666666666666666666666553 3345566666666666666666666666666543 3345566666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.6e-06 Score=64.79 Aligned_cols=113 Identities=14% Similarity=-0.039 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++++.. .+.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 4455667777788888888888888888775 344 567777888888888888888888888772 2345677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
+..+..++...|++++|...|++..+..+.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888999999998888888877777666655543
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=1.2e-06 Score=63.79 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC------hhhHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN------DAEYTC 224 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 224 (415)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++..+... ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455555555555555555555555542 23444555555555555555555555555554322110 113444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 014978 225 VISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+..++...|++++|...|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555544
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=1.3e-06 Score=66.72 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=66.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666777777777777777766653 3355666667777777777777777777766653 334566666677
Q ss_pred HHHcCCChHHHHHHHHHHHHcc
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7777777777777777766643
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=1.8e-07 Score=68.29 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC-------HhHHHHH
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD-------VVTYNLW 120 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l 120 (415)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444444444444444444432 2223333344444444444444444444433321111 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 014978 121 LAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..++...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5.5e-07 Score=67.33 Aligned_cols=112 Identities=8% Similarity=-0.052 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+..++...|++++|+..+++..+..+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 55677778888888888888888888887754 54 5667777788888888888888888877766777888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..++...|++++|...|++..+.. +.+...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 8888888888888888888888763 3344444444443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.6e-06 Score=74.87 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=118.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDW----------------ISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKN 183 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 183 (415)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45667888888888888888876322110 1356677788888888888888877654211 111
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHcc----cccC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-
Q 014978 184 R----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLF----AKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD- 253 (415)
Q Consensus 184 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 253 (415)
. .+.+.+...+...|+++.+..+++...... ..+. ..++..+...+...|++++|..+++.+...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 123333344455677788877777765431 1111 23566677777777888888777777654321111
Q ss_pred ----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC--CC-CC-C--HhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 254 ----PRVPNILLAAYINRNQLEMAESFYNRLVTK--GI-KP-C--YTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 254 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..++..++..|...|++++|..++++.... .+ .| . ...+..+...+...+++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 235666677777777777777777766531 11 11 1 12444555556667777777777777655
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=5.2e-07 Score=65.77 Aligned_cols=92 Identities=9% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC---HhHHHHHHHHH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD---VVTYNLWLAAC 124 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 124 (415)
+...+...|++++|.+.|+...+.. +.+. ..+..+..++...|++++|...|+++.+..|.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3344444444444444444444432 1111 233344444444455555555544444433333 34444455555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 014978 125 ASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~ 143 (415)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.8e-06 Score=77.58 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc------------------chHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGP------------------DTCSALLHSYVQNKKSAEAEALMEKMSECG- 75 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~- 75 (415)
.+..+-.+.+.|++++|++.|..+.+..|+. .++..++..|...|++++|.+.+..+...-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556667889999999999999877764321 136678888888899999988888765421
Q ss_pred CCCCc----ccHHHHHHHHHhcCCcCcHHHHHHHHhhc------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 014978 76 FLKCP----LPYNHMLNLYISNGQLDKVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-- 143 (415)
Q Consensus 76 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 143 (415)
-.++. .+.+.+...+...|++++|..++...... ...-..++..++..+...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 01111 12222333444567788888887775432 1222456777888888888888888888776533
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 KI---DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+. +....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 112346777788888888888888888776532 11111 23455666677777888888777776654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=6.6e-07 Score=65.19 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHH
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKN----RVAYS 188 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 188 (415)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555555555555555555555442 33444555555555555555555555555544311 011 34455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+..++...|++++|.+.|+++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555554
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.59 E-value=5.1e-08 Score=88.14 Aligned_cols=139 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----------------ccHHHHHHH
Q 014978 27 QTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPYNHMLNL 89 (415)
Q Consensus 27 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~ 89 (415)
++++|+..|+......| ....|..+...+.+.|++++|+..|++..+.. |+. ..|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544443333 34567777788888888888888888877643 322 344444444
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
+.+.|++++|+..+++..+..|.+..+|..+..++...|++++|...|++..+.. +.+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444444444444455555555555555554444432 22233444444444444444433
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=9.1e-07 Score=65.23 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
..|..+...+...|++++|...|++.....|.+...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3444444555555555555555555544444455555555555555555555555555555543 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014978 161 KMELPEKAATTLKEMEK 177 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~ 177 (415)
..|++++|...|++..+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=5.3e-07 Score=64.98 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=36.6
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
..+.+.|++++|+..|++..+..|.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444443333444444444444444444444444444444332 2223334444444444444444
Q ss_pred HHHHHHHHH
Q 014978 168 AATTLKEME 176 (415)
Q Consensus 168 a~~~~~~~~ 176 (415)
|...+++..
T Consensus 104 A~~~~~~al 112 (121)
T 1hxi_A 104 ALASLRAWL 112 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=3.6e-07 Score=65.90 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=74.9
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..|.+...+..+..++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566677778888888888888887764 3456677777788888888888888888877777777888888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 014978 126 SQNDKETAEKAFLELKKT 143 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~ 143 (415)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887765
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=3.2e-06 Score=64.58 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677788888888999999999998888764 446778888888888889999999999888886533 5667888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcc
Q 014978 228 SLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888889999888888887765
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=2.4e-06 Score=62.09 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDV---VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLY 159 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~ 159 (415)
+...+...|++++|...|+.+.+..|.+. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444555555555555555544433333 344455555555555555555555555442 112 33444455555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 014978 160 IKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~ 178 (415)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=2.2e-07 Score=83.99 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=75.3
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
+++++|++.|+......+.....|..+...+.+.|++++|...|++.++.. |+...+ ..+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----
Confidence 345555555543332223455567777777888888888888888777642 221000 000000
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
+.. +.....|..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|...|+++.+.. +.+
T Consensus 311 ~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~ 384 (457)
T 1kt0_A 311 ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN 384 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 000 001234444555555555555555555555543322 33444555555555555555555555555443 223
Q ss_pred CchHHHHHHHHHhcCcHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~ 274 (415)
...+..+..++.+.++.+++.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=1.4e-07 Score=85.60 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++..+..|.+..+|..+..++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444556677888888888888888764 33567788888888888888888888888887777788888888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSL--YIKMELPEKAATTLK 173 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 173 (415)
.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998888763 3344455555555 777888888888887
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=5.3e-06 Score=62.80 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKID-PD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RV 185 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 185 (415)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 124555555566666666666666555432100 01 23
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHccccc-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----NDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
.+..+...+...|++++|...+++..+..... ....+..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455555555666666666555554331100 11234444444555555555555555443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=7e-06 Score=62.10 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-C----h
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-N----D 219 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~ 219 (415)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+..... + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777666543100 11 1345556666666677777777666655432110 1 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 220 AEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 220 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
..+..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 234444555555555555555555443
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=4.7e-05 Score=70.43 Aligned_cols=171 Identities=7% Similarity=-0.002 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE----------FEKAENIYDEWESISGTGDPRVPNILLAAYINRN- 268 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 268 (415)
.++|++.++++....+. +...|+.-..++...|+ ++++...++.+.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 36678888888775433 44456655555555665 788888888888775 337777877777777778
Q ss_pred -cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-------
Q 014978 269 -QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ------- 339 (415)
Q Consensus 269 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 339 (415)
+++++...++++.+...+ +...|+.-...+.+.| .++++++.+.++++ ..+-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccc
Confidence 668888888888886533 7778888777777888 78888888888877 2345677777777766653
Q ss_pred -------CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 340 -------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 340 -------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
+.++++.+.+.++....|.+..+|+.+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 5578999999999999999999999988888887764
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=1.5e-06 Score=62.09 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=44.3
Q ss_pred cCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 93 NGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
.|++++|+..|++..+. .|.+..++..+..++...|++++|...|++..+.. +.+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555666555543 23344455555555556666666666665555543 333445555555555556666666
Q ss_pred HHHHHHHhc
Q 014978 170 TTLKEMEKR 178 (415)
Q Consensus 170 ~~~~~~~~~ 178 (415)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=9.5e-07 Score=80.21 Aligned_cols=122 Identities=7% Similarity=-0.049 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|...+++..+.. +.+...+..+..+|.+.|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344456678999999999999888778889999999999999999999999999998874 4567788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHcCCChHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSL--YTNMGYKDEVLRIWK 208 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 208 (415)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988763 3344455555555 777889999999888
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=1.2e-05 Score=61.23 Aligned_cols=98 Identities=17% Similarity=0.056 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKT--------K---------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..+......+.+.|++++|...|.+.++. . -+.+...|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 0 012334666777777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.. +.+...|..+..++...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 445666777777777777777777777777664
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=2.9e-06 Score=74.25 Aligned_cols=136 Identities=10% Similarity=0.000 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
|..+...+.+.|++++|++.|++..+.- +... . ........+..+.+..+|..+..++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~-------~~~~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------A-------AAEDADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------H-------HSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------c-------ccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666667777777777776665420 0000 0 0000111112233455666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
|++++|+..+++.++.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...++.+++.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666553 3345566666666666666666666666666552 234555555555555555555543
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=4e-06 Score=63.87 Aligned_cols=115 Identities=14% Similarity=0.029 Sum_probs=53.6
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+......+.+.|++++|+..|.+....- +. ........... +..+ .+.+...|..+..++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~----------~~~~~~~~~~~--~~~~---~~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT----------LILREKPGEPE--WVEL---DRKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHTSCTTSHH--HHHH---HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------hcccCCCCHHH--HHHH---HHHHHHHHHHHHHHHH
Confidence 445566667777777777777777665530 00 00000000000 0000 1223344555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 75 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5555555555555555442 233444555555555555555555555555443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=2.7e-06 Score=60.80 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHHhCCC-CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhH
Q 014978 267 RNQLEMAESFYNRLVTKGI-KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 344 (415)
.|++++|...|++.++.+. .| +...+..+...|...|++++|+..|+++++. .+-+...+..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4666777777777766431 12 3456667777777777777777777777762 23346667777777777777777
Q ss_pred HHHHHHHHHHcCCCCHH
Q 014978 345 AEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 345 a~~~~~~~~~~~~~~~~ 361 (415)
|...+++.....+.++.
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 77777777776666543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.31 E-value=9.9e-06 Score=70.83 Aligned_cols=97 Identities=13% Similarity=-0.024 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTK---------------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+..+...+.+.|++++|+..|++.++.- -+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777778888888888888888777520 01122344444444455555555555555444432
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+.+...|..+..+|...|++++|+..|++..+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334444444444444555555554444444
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=2e-06 Score=74.32 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-Y 194 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 194 (415)
.|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67777778888888888888888877663 3456677778888888888888888888776642 2234444444444 2
Q ss_pred HcCCChHHHHHHHHHHHHcc
Q 014978 195 TNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~ 214 (415)
...+..+.+...|..|....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 33456677777777776643
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=9.3e-05 Score=68.47 Aligned_cols=170 Identities=6% Similarity=-0.056 Sum_probs=110.0
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--L 164 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~ 164 (415)
++|++.++++....|.+..+|+.-..++...++ +++++..++.+.+.. +-+..+|+.-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 456677777666666666677766666666665 677777777777664 445566666666666667 5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc-----------
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----------- 232 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 232 (415)
++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++++..+. +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777664 346666766666666666 677777777777665443 555566555554442
Q ss_pred ---CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 233 ---GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 233 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
+.++++.+.++.+.... +-+...|+.+-..+.+.++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 44677777777777665 33677777776666665553
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=5.6e-06 Score=71.54 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445777778888888888888888887765 344321 112223333322211 1256677777
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH-HHhcCcHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA-YINRNQLEM 272 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 272 (415)
+.+.|++++|+..+++.++..+. +...|..+..++...|++++|...|+++.+.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887775432 55677777778888888888888888776653 2244455555544 233456677
Q ss_pred HHHHHHHHHhC
Q 014978 273 AESFYNRLVTK 283 (415)
Q Consensus 273 a~~~~~~~~~~ 283 (415)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=3.4e-05 Score=57.39 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKID-P-----D-----WISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC 180 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 180 (415)
+......+.+.|++++|+..|++.++.... | + ...|..+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444445555556666666666655544211 0 1 114444555555555555555555544442 00
Q ss_pred CC-CHHHH----HHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 181 RK-NRVAY----SSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 181 ~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.| +...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12 22334 4444444455555555555544444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=2.1e-05 Score=58.44 Aligned_cols=63 Identities=8% Similarity=-0.099 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISY----STLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
..|..+..++.+.|++++|+..+++.++. . +.+...| .....++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888765 3 3344577 78888888999999999998888753
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=4.4e-05 Score=51.23 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
...+..+...+...|++++|+..++++++. .+.+...+..+..++...|++++|...+++..+..+.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456677777888888888888888888772 23456777888888888888888888888888888777777777777
Q ss_pred HHHhcC
Q 014978 369 TYAKAG 374 (415)
Q Consensus 369 ~~~~~g 374 (415)
.+...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=6.4e-05 Score=55.30 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=7.1
Q ss_pred cHHHHHHHHHHHHhcC
Q 014978 60 KSAEAEALMEKMSECG 75 (415)
Q Consensus 60 ~~~~a~~~~~~~~~~~ 75 (415)
++++|.+.|++..+.|
T Consensus 10 d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 10 DLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC
Confidence 3444444444444433
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=4.7e-05 Score=53.92 Aligned_cols=80 Identities=6% Similarity=-0.050 Sum_probs=47.1
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+.|++.|++..+..|.+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666555555556666666666666666666666666665553 3344455556666666666666666666554
Q ss_pred h
Q 014978 177 K 177 (415)
Q Consensus 177 ~ 177 (415)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=0.00019 Score=52.71 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 014978 129 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVL 204 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 204 (415)
++++|..+|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444443 12211 3333444444444444444444432 33333444444443 34444444
Q ss_pred HHHHHHHH
Q 014978 205 RIWKKMMS 212 (415)
Q Consensus 205 ~~~~~~~~ 212 (415)
++|++..+
T Consensus 82 ~~~~~Aa~ 89 (138)
T 1klx_A 82 QYYSKACG 89 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.6e-05 Score=52.55 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=55.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC------HH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS------TE 361 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 361 (415)
+...+..+...+...|++++|+..|+++++. .+.+...+..+..++...|++++|...++++.+..+.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3455666666677777777777777777662 23355666667777777777777777777777766665 45
Q ss_pred HHHHHHHHHHhcCCC
Q 014978 362 IYNSLLRTYAKAGKM 376 (415)
Q Consensus 362 ~~~~l~~~~~~~g~~ 376 (415)
.+..+..++...|+.
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 80 LQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhH
Confidence 555556666555544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=6.6e-05 Score=53.13 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|...|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677788777764 4567788888888889999999999998888764 445677888888888889999999888888
Q ss_pred HHcc
Q 014978 211 MSLF 214 (415)
Q Consensus 211 ~~~~ 214 (415)
.+..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=1.6e-05 Score=59.05 Aligned_cols=105 Identities=11% Similarity=-0.015 Sum_probs=57.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
.+.+.+++|++.++.+....| ++..|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 445556666666665555544 45555555555555554432222111 1345666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQ-----------NDKETAEKAFLELKKTKIDPDWISYST 154 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~ 154 (415)
.|++..+..|.+..+|..+..+|... |++++|++.|++.++. .|+...|..
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66665555555566666666666554 3677777777777665 455444433
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.6e-05 Score=55.85 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=19.1
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
+...|++++|++.|++..+..|.+...+..+..++...|++++|...+++..
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=2.2e-05 Score=70.90 Aligned_cols=122 Identities=11% Similarity=-0.024 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHhCC---CC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CC-CHHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTK---ID---P-DWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC-RK-NRVAYSSLL 191 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g---~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 191 (415)
..|++++|+.++++..+.. +. | ...+++.|..+|...|++++|..++++.... |. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566666666665554320 11 1 2235666666666666666666666655431 10 11 133466666
Q ss_pred HHHHcCCChHHHHHHHHHHHHc-----ccc-cC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSL-----FAK-MN-DAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..|...|++++|+.++++..+. |.. |+ ..+...+..++...+.+++|+.++..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655432 221 11 12344555556666677777777776655
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=8.4e-05 Score=67.13 Aligned_cols=128 Identities=7% Similarity=0.005 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR---TCRK----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAE 221 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~ 221 (415)
+..+...|++++|+.++++..+. -+.| ...+++.+..+|...|++++|+.++++.++. |. .|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999999887653 1222 2457899999999999999999999987653 22 122 336
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh---ccCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWES---ISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
++.|...|...|++++|..++++..+ .-+-|+ ..+.+.+..++...+.+++|..++..+.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998654 112222 334567778888899999999999998763
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=6.5e-05 Score=50.36 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22333444444444444444444444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=3.4e-05 Score=57.24 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=54.0
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+.+++|++.++...+..|.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 345555666666555555666666666666555554 347777777777663 334556777777776654
Q ss_pred -----------CHHHHHHHHHHHHhcCCCCCHHHH
Q 014978 164 -----------LPEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 164 -----------~~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
++++|++.|++..+. .|+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 566666666666554 3444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=0.00033 Score=48.04 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444445555555555555444432 22333444444555555555555555544443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.70 E-value=0.0011 Score=56.50 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344455555554555566666666666555543 4555555555555555666666666655555
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00029 Score=48.31 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=46.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
|.+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566677777777777777777777777777664 33455677777777777777777777777654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.65 E-value=0.0012 Score=56.44 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCcchHHHHHHHHHh--c---CcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHh---cCCcC-cH----HHHHHHHhh
Q 014978 43 RGPDTCSALLHSYVQ--N---KKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYIS---NGQLD-KV----PQMLQELKK 108 (415)
Q Consensus 43 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~-~a----~~~~~~~~~ 108 (415)
.++.+|...+++... . .+..+|..+|++..+.. |+ ...|..+..++.. .+... .. ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 377888888776542 2 34578999999999875 54 3455544444321 11111 11 112222211
Q ss_pred --cCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 109 --NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 109 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 257888899999888888899999999999999985 78888888899999999999999999999886 577777
Q ss_pred HH
Q 014978 187 YS 188 (415)
Q Consensus 187 ~~ 188 (415)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.0035 Score=42.50 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.+.+.|++++|+..++++++. .+.+.. .+..+..++...|++++|...|+++.+..+.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 344455555555555555441 122334 445555555555555555555555555554433
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.30 E-value=0.035 Score=45.53 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcccccC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CcHH
Q 014978 201 DEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKL-----GEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-NQLE 271 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 271 (415)
..|...+++.++ +.|+ ...|..+...|... |+.++|.+.|++..+.++..+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 566667777766 3444 44677888888774 88999999999888876444577788888888884 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHhHHH
Q 014978 272 MAESFYNRLVTKGIK--PCYTTWE 293 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~--p~~~~~~ 293 (415)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999988887655 5544443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0011 Score=45.12 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-Ccc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPD-TCSALLHSYVQNKKSAEAEALMEKMSECG 75 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 75 (415)
+..+..+.+.|++++|++.|+.+....| ++. .|..+..++...|++++|.+.|++..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667788889999999999998887766 456 88888889999999999999999988865
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.10 E-value=0.0091 Score=41.03 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=51.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR----KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
+...+..+...+.+.|++..|...|+.+++... .-.+....+..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344555667777777777777777777766311 0123456677777778888888888888888877777765543
Q ss_pred H
Q 014978 364 N 364 (415)
Q Consensus 364 ~ 364 (415)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.0082 Score=58.43 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=93.7
Q ss_pred HHhhhhHHHHH-HHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRAREN-FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
...+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.- ..-+......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHH
Confidence 46788888877 654433 1223367777788888888888766321 112344566788888888
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....|.
T Consensus 674 ~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 674 LLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 76443 4677888899999999999999888887743 23455555556666665555554444331
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
++....++.+.|++++|++++.+
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22223334445555555555444
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0017 Score=57.66 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhhHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKR---TCRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAEYTCVISS 228 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~ 228 (415)
|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.++++.++. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11111 234556666666666666666666655432 11 111 1245566666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 014978 229 LVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~ 246 (415)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0042 Score=55.20 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhhHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRT---CRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAEYTC 224 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 224 (415)
+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++.+.. |. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666665321 1121 344666666666666666666666655432 11 111 224666
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 014978 225 VISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666677666666666544
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.01 E-value=0.036 Score=45.45 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-CCh
Q 014978 130 KETAEKAFLELKKTKIDPD---WISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM-GYK 200 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 200 (415)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777776 455 45778888888884 88888888888888764212366677777777774 888
Q ss_pred HHHHHHHHHHHHcccc--cChhhH
Q 014978 201 DEVLRIWKKMMSLFAK--MNDAEY 222 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~--~~~~~~ 222 (415)
+++.+.+++.+...+. |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888886655 554333
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0013 Score=58.35 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHHHH
Q 014978 128 NDKETAEKAFLELKKT---KIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKN-RVAYSSLLSL 193 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~---g~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 193 (415)
|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6778888888776542 1112 2347788888888888888888888877642 2 1222 3458888888
Q ss_pred HHcCCChHHHHHHHHHHHHc
Q 014978 194 YTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~ 213 (415)
|...|++++|+.++++..+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 88888888888888877653
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.95 E-value=0.016 Score=42.47 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHhHhcccCCCC--CHHHHHHHHHHHHHcCChh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQGDID 343 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 343 (415)
.+..+.+-|.+....+. ++..+...+..++++.+ +.++++.+++...+. . .| +...+..|..++.+.|+++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHccCHH
Confidence 34455666666665553 57777777778888877 566888888887772 2 23 3455566677788888888
Q ss_pred HHHHHHHHHHHcCCCCHHH
Q 014978 344 GAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~ 362 (415)
+|++.++.+.+..|.+..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 8888888888888876433
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.93 E-value=0.0069 Score=40.59 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=25.1
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.++|..++++..+..|.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555444555555555555555555555555555555544
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0024 Score=56.76 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTK---IDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKN-RVAYSSL 190 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 190 (415)
.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++... | ..|+ ..+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 36788999999998887541 2222 347888999999999999999998887642 2 1122 4568889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
...|...|++++|+.++++..+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.011 Score=39.68 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 148 DWISYSTLTSLYIKMEL---PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 355555555555442 223444444455555555555555555555543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.81 E-value=0.027 Score=40.77 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHhcCcH------HHHHHHHHHHHhCCCCCCHh-H---HHHHHH---HHHhcCCHHHHHHHHHHhHhcc
Q 014978 253 DPRVPNILLAAYINRNQL------EMAESFYNRLVTKGIKPCYT-T---WELLTW---GYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~-~---~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |..+.- .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 344444445544444555 5666666666653 344321 1 111111 123347899999999999874
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
+-.. ...|....+--.++|+...|.+++......++.|.....+.++-+--.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 2233 677777777778999999999999999999999998888888766543
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.084 Score=51.31 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
..++..+.+.|.+++|.++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555566666666655442110 0122234456666666654332 2445566666666666
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 312 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 312 (415)
|+++.|.+.|..+.. |..+...+...|+.+...++-+.....|. ++.....|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665432 22333444445555544444444333321 222233344445555555544
Q ss_pred HH
Q 014978 313 KK 314 (415)
Q Consensus 313 ~~ 314 (415)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.69 E-value=0.029 Score=41.15 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
...+.+-|.+..+.| +++..+...+..++++.+ +.++++.+|++..+.+ .| ....+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555554 356666666666777766 4456777777766653 23 2344445566667777777777
Q ss_pred HHHHHHHHc
Q 014978 205 RIWKKMMSL 213 (415)
Q Consensus 205 ~~~~~~~~~ 213 (415)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777663
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.53 E-value=0.042 Score=37.59 Aligned_cols=62 Identities=10% Similarity=-0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTK------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+..+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444555555555555554443320 012233444444555555555555555544444
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.38 E-value=0.052 Score=39.30 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=56.8
Q ss_pred CcchHHHHHHHHHhcCcH------HHHHHHHHHHHhcCCCCCcc-cHHHHHHH------HHhcCCcCcHHHHHHHHhhcC
Q 014978 44 GPDTCSALLHSYVQNKKS------AEAEALMEKMSECGFLKCPL-PYNHMLNL------YISNGQLDKVPQMLQELKKNT 110 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 110 (415)
|+++|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 667777777777666777 7777777776653 455421 11111111 122356666666666664432
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.-...|-..+..-.+.|++..|.+++...+..+
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2225556666666666666666666666666554
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.22 E-value=0.63 Score=45.18 Aligned_cols=272 Identities=13% Similarity=0.048 Sum_probs=139.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHH
Q 014978 122 AACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTC-------RKNRVAYSSLLS 192 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 192 (415)
-+....|+.++++.++......+-..+. ..-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456677777777777665542101122 2233444555666666677777776654321 011122223333
Q ss_pred HHHcCCC-hHHHHHHHHHHHHcccccCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH--HHHhc
Q 014978 193 LYTNMGY-KDEVLRIWKKMMSLFAKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA--AYINR 267 (415)
Q Consensus 193 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 267 (415)
++.-.|. -+++.+.+..+..... +.. ..-..+...+...|+.+....++..+.+.. +..+...++. ++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333343 2456666666554321 111 112233344556788887788887766532 2233333333 34467
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWE--LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 345 (415)
|+.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 88888888888877631 22222222 3345667788887777788888762 223334334444455567777777
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHhCCCCCCHHHH-HHHHHhcc
Q 014978 346 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP---LIIVERMQKDNVQMDAETQ-KVLKITSE 404 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a---~~~~~~m~~~~~~p~~~t~-~~l~~~~~ 404 (415)
.++++.+.+.+-+....-..+.-+....|+.. ..++..+. -.+|..+- ..+.++..
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~---~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT---KDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 77777666544322232333333444445442 44444443 23444443 34444443
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.17 E-value=3.8e-05 Score=67.00 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=163.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
.+..|+.|..+....+++.+|++.|- +. .|+..|..++.+..+.|.+++-+.++...++. ..+...=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 57899999999999999988887663 22 46778899999999999999999999887766 3344455688999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------------------CCCCC
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--------------------TCRKN 183 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 183 (415)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+... .-..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998776554442 355555667777777777777776666543321 01236
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 263 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (415)
+.||..+-.+|...+++.-|--.--.++ ........++..|...|.+++-+.+++.-.... .....+|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 6788888888888888776644332222 122234446667778888888888887765432 3456677777777
Q ss_pred HHhcCcHHHHHHHHHHHHhC-CCC------CCHhHHHHHHHHHHhcCCHHHHH
Q 014978 264 YINRNQLEMAESFYNRLVTK-GIK------PCYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
|++- ++++..+.++....+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7664 445544444433221 111 12345667777777777777654
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.14 E-value=0.12 Score=36.37 Aligned_cols=92 Identities=8% Similarity=0.000 Sum_probs=59.5
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHhHhcccCCCC--CHHHHHHHHHHHHHcC
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQG 340 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g 340 (415)
....+..+.+-|......|. |+..+--.+.+++.+..+... ++.++..... . -.| ...-...|.-++.+.|
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~-~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--K-GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--T-SCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHHHhh
Confidence 33445555666665555443 566666677777777776655 7777777666 1 123 2234455666788888
Q ss_pred ChhHHHHHHHHHHHcCCCCHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~ 361 (415)
+++.|++.++.+.+..|.+..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCCHH
Confidence 888888888888888777643
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.25 Score=35.09 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=96.9
Q ss_pred HcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHH
Q 014978 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
.-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 44577888888887776542 3445666665555556666666666665432 121 1344444444
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+-.+- .+.......+..+..+|.-++-.+++...+. ..+|++.....+..+|.+.|+..+|.+++.++-+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4443321 2456667778888899999999999988654 4678899999999999999999999999999999
Q ss_pred cCCCC
Q 014978 355 AGHVS 359 (415)
Q Consensus 355 ~~~~~ 359 (415)
.|...
T Consensus 154 kG~kE 158 (172)
T 1wy6_A 154 KGEKE 158 (172)
T ss_dssp TTCHH
T ss_pred hhhHH
Confidence 88763
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.67 E-value=1.4 Score=41.03 Aligned_cols=319 Identities=12% Similarity=0.034 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
...|..+....+.|+++.+..+...+......+ ..|..+...+ ....+++....+++-.. .+.....-+..+..+.
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 346788888999999999999887775431111 2333333222 23355555544443221 1111122233445566
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK--AA 169 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~--a~ 169 (415)
+.+++...+.++.. .|.+...-.....+....|+..+|....+.+-..| ......+..++..+.+.|.+.. ..
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 67776655554432 25566666667778888898888888777776665 3445667777877776665433 33
Q ss_pred HHHHHHHhcC-----------CCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh---HHHHHHHHHhcCC
Q 014978 170 TTLKEMEKRT-----------CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLVKLGE 234 (415)
Q Consensus 170 ~~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 234 (415)
.-++.+...| ++++... ...++.... ++..+...... ..++... +...+.-+. ..+
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla-r~d 229 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVA-RQD 229 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH-HHC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH-hcC
Confidence 3333333332 1111111 111111111 11111111110 1122221 111222222 337
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHH----HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNIL----LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 310 (415)
.+.|...+....+.. ..+......+ +......+...++...+....... ++.....-.+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 788888888776543 2233322222 222233343456666666654432 344334444444557788999888
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
.|..|... . .....-..-+..++...|+.++|..+|+.+.+
T Consensus 307 ~~~~l~~~--~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPME--A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTT--G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccc--c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887551 1 12333344456677788888888888887764
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.64 E-value=0.24 Score=43.33 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK-----DNVQMDAETQKVLKI 401 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~-----~~~~p~~~t~~~l~~ 401 (415)
...++.++...|+++++...++.+....|.+...|..++.++.+.|+. |++.|....+ .|+.|+..+-.+...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445667788899999999999999999888999999999999999998 4666666543 699999999887766
Q ss_pred hcc
Q 014978 402 TSE 404 (415)
Q Consensus 402 ~~~ 404 (415)
+..
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.52 Score=35.49 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344556666666665543 1445666666666667777766666665422 2334444555666665
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 273 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
..++-+.....| -++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554444433 134444455566777777776655
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.52 Score=35.48 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
....+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 2566777777777777777777777766532 333444555566666
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
.-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6555554444333 234444555566777777776644
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.47 E-value=0.43 Score=33.90 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
...++.+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444444444444443221 13344444444444444444444444444444443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.38 E-value=0.15 Score=35.87 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK---AATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
.+.+-|.+....| .++..+-..+..++++..+..+ ++.+++++.+.+ .| .......+.-++.+.|++++|.+.
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444333333 2444444444445555444433 444555444432 11 112222334444555555555555
Q ss_pred HHHHHH
Q 014978 207 WKKMMS 212 (415)
Q Consensus 207 ~~~~~~ 212 (415)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.28 E-value=2.4 Score=41.30 Aligned_cols=313 Identities=10% Similarity=0.006 Sum_probs=150.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcCcHHHHHHHHhhcCC--------CCHhHHHHHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLDKVPQMLQELKKNTS--------PDVVTYNLWLA 122 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~ 122 (415)
-+....|+.++++.++......+-..+.. .-..+.-+.+..|..+++..++........ +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556677777777776654321011211 222233345555655566666666443211 11222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 123 ACASQND-KETAEKAFLELKKTKIDPDWI--SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 123 ~~~~~~~-~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+++-.|. -+++...+..+.... .+... .-..|...+.-.|+.+-...++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 234455555554432 11111 11233344556677666666666665431 1112222233334446777
Q ss_pred hHHHHHHHHHHHHcccccChhh--HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAE--YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 277 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 277 (415)
.+.+..+.+.+... ..|.... -..+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777777653 1222211 1233445667778777777777776532 223333333333444566666667777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC---------ChhHHHH
Q 014978 278 NRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG---------DIDGAEH 347 (415)
Q Consensus 278 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~ 347 (415)
..+.+.+ .|....-..+.-+....|.. .++++.+..+.. .+|..+-..-+.++...| ++...++
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-----D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-----DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-----CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 6665543 34444444444455555543 567777777765 345544433333333222 3344444
Q ss_pred HHHHHHHcCCCC--HHHHHHHHHHHHhcCC
Q 014978 348 LLVTLRNAGHVS--TEIYNSLLRTYAKAGK 375 (415)
Q Consensus 348 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 375 (415)
.+.........+ ...-..+..+....|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 444444332222 3455666666666653
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.79 E-value=0.00023 Score=62.23 Aligned_cols=246 Identities=12% Similarity=0.046 Sum_probs=167.6
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
.+..|..|..+..+.+++.+|++.|-+ ..|...|..++.+..+.|.+++-..++...++..- ++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456799999999999999999877633 34667789999999999999999999987776633 33444689999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--------------------ccccC
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL--------------------FAKMN 218 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 218 (415)
|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+-.. .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776544432 355555666777777777777666655433110 01125
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 014978 219 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 298 (415)
Q Consensus 219 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 298 (415)
..||..+-.+|...+++..|.-.--.+.- .+.-...++..|-..|.+++...+++...... +.....|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 66888888899999988877655444332 22233346777888999999999998887532 4577788888888
Q ss_pred HHhcCCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHHHHHHcCChhHHH
Q 014978 299 YLKKGQMEKVLECFKKAIGSVRKWVP------DHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 299 ~~~~~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
|++- ++++..+.++.-.+. ..++- ....|..++-.|.+-..++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sr-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8764 466666655543331 11111 1224666777777777777654
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.43 E-value=1.8 Score=43.89 Aligned_cols=150 Identities=10% Similarity=-0.024 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
.|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 4666777777777777777766665543211111 1466677777777777777777766655432 233444444
Q ss_pred HHHHcC------------CChHHHHHHHHHHHHccccc-ChhhHHHHHH-HHHhcCChHHHH-HHHHHHHhccC---CC-
Q 014978 192 SLYTNM------------GYKDEVLRIWKKMMSLFAKM-NDAEYTCVIS-SLVKLGEFEKAE-NIYDEWESISG---TG- 252 (415)
Q Consensus 192 ~~~~~~------------~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~g~~~~a~-~~~~~~~~~~~---~~- 252 (415)
..++.. |..++..+++..-.+....+ +...|..++. -+...|++..|- -+|+.+.+.+. ..
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~ 1058 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIG 1058 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhcccccc
Confidence 444433 34455555554433221111 1112333333 334556655443 34444433210 11
Q ss_pred ------CCchHHHHHHHHHhc
Q 014978 253 ------DPRVPNILLAAYINR 267 (415)
Q Consensus 253 ------~~~~~~~l~~~~~~~ 267 (415)
-...|..+|+++.--
T Consensus 1059 ~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1059 KKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHHhcC
Confidence 124567777776554
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.62 Score=44.24 Aligned_cols=125 Identities=15% Similarity=0.035 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCCcccHHH--HHHHHHhcCC-cCcHHHHHHHHhh-------c-CCCCH--
Q 014978 49 SALLHSYVQNKK-SAEAEALMEKMSECGFLKCPLPYNH--MLNLYISNGQ-LDKVPQMLQELKK-------N-TSPDV-- 114 (415)
Q Consensus 49 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~-~~~a~~~~~~~~~-------~-~~~~~-- 114 (415)
..++..+...++ .+.|..+|+++.+.+ |....+-. ++..+...++ --+|.+++.+..+ . .+.+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 688999999998875 54433322 2222222221 2235555544332 1 11221
Q ss_pred --------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 115 --------VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 115 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
.....-...+...|+++.|+.+-++....- +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122333456778899999999999998872 4456699999999999999999999998874
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=3.3 Score=36.86 Aligned_cols=243 Identities=13% Similarity=0.079 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH----c
Q 014978 127 QNDKETAEKAFLELKKT-----KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYT----N 196 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~ 196 (415)
.++++.|++.+-.+.+. +...+......++..|...|+++...+.+..+.+. |.. ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37788888877666532 23445667788899999999999988887766543 322 222233333322 2
Q ss_pred CCChHHHHHHHHHHHHc--ccccCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-----CchHHHHH
Q 014978 197 MGYKDEVLRIWKKMMSL--FAKMND--------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PRVPNILL 261 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~--~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~ 261 (415)
....+.... ...... .+.... .....|...+...|++.+|..++..+...-...+ ...+...+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222221111 111111 111111 1224567778888888888888888764322222 23455667
Q ss_pred HHHHhcCcHHHHHHHHHHHH----hCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHH----H
Q 014978 262 AAYINRNQLEMAESFYNRLV----TKGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT----A 331 (415)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~----~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~----~ 331 (415)
+.|...+++..|..+++++. .....|+. ..+..++..+...+++.+|...|.++... .....|...+. .
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~-~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT-DAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHSCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-ccccCCHHHHHHHHHH
Confidence 78888888888888888764 22222222 24556667777888888888888887662 22222333222 2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 374 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 374 (415)
++.+..-.+....-..++......... ....+..++.+|....
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence 222333334444444444444444333 2366777777776643
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.84 E-value=0.91 Score=30.21 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 367 (415)
+..+-++.+.. ..+.|++....+.+.+|.+.+++..|.++|+-++..-.....+|..++
T Consensus 28 e~rrglN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 34444444444 455556666666666666666666666666555543222223344443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.73 E-value=1.4 Score=44.62 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI------------------ 145 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~------------------ 145 (415)
..++..+...+..+-+.++... .+.+...--.++.++...|++++|.++|.+... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhh----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3455556666666665554332 234444445566677777777777777765421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 146 -----DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 146 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
..-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011234778899999999999999888877654322221 2588899999999999999999887765433
Q ss_pred cChhhHHHHHHHHHhcCC------------hHHHHHHHHHHHh-c-cCCCCCchHHHHHHHHHhcCcHHHHH-HHHHHHH
Q 014978 217 MNDAEYTCVISSLVKLGE------------FEKAENIYDEWES-I-SGTGDPRVPNILLAAYINRNQLEMAE-SFYNRLV 281 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~ 281 (415)
-...+..++...+..|. .++..+++..-.+ . .+...+.-|..|=.-+...|++..|- -+|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 23455666666665544 4455556654322 2 11222233455545555677766554 4555543
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.60 E-value=0.22 Score=43.46 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAYS 188 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 188 (415)
+...++..+...|+++++...+..+.... +-+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44556777788888888888888887663 55777888888888888888888888887654 48888876644
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.54 E-value=1 Score=42.81 Aligned_cols=49 Identities=14% Similarity=-0.064 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+..-|..|.....+.+.+++|.+.|+...... -++..+..|++.|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34458888888889999999999999998643 47888999999998876
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.88 E-value=1.1 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
..--.+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445666666666666666666554
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.70 E-value=0.85 Score=30.35 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3446666677777777777777777777888888888888887777665
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.12 E-value=6.1 Score=35.11 Aligned_cols=189 Identities=10% Similarity=0.047 Sum_probs=119.4
Q ss_pred CCcCcHHHHHHHHhhc------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH--HHHHHHHHhcCC
Q 014978 94 GQLDKVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISY--STLTSLYIKMEL 164 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~--~~l~~~~~~~~~ 164 (415)
|+++.|++.+..+.+. .+........++..|...++++...+.+..+... |..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888887666542 3445667888999999999999998888776543 433333221 222333333343
Q ss_pred HHHHHH--HHHHHHh--cC-CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-----hhHHHHHHHHHh
Q 014978 165 PEKAAT--TLKEMEK--RT-CRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTCVISSLVK 231 (415)
Q Consensus 165 ~~~a~~--~~~~~~~--~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 231 (415)
.+.... +.+.+.. .| +-.. ......|...+...|++.+|..++..+...-...+. ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332222 1111111 11 1111 122356788899999999999999998754222221 256777889999
Q ss_pred cCChHHHHHHHHHHHhc--cCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 232 LGEFEKAENIYDEWESI--SGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
.+++..|..++.++... ...++ ...+...+..+...+++.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999987531 11222 23456677778888999999888877764
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.96 E-value=2.3 Score=30.06 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
+..+-++.+.. ..+.|++......+.+|.+.+++..|.++|+-++..--....+|..+++
T Consensus 71 ElrrglN~l~~--~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34444444444 4566777777777777777777777777776666543333344554443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.96 E-value=2.4 Score=30.04 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=47.8
Q ss_pred CCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 286 KPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|+..+--.+.+++.+..+. ..++.++....+. +..-....+-.|..++.+.|+++.|++..+.+.+..|.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45666666666777776654 3567777777662 2111234455666677888888888888888888777754
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.43 E-value=1.3 Score=32.87 Aligned_cols=117 Identities=8% Similarity=-0.104 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcC---CCCc-------chHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCCccc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDK---MRGP-------DTCSALLHSYVQNKKSAEAEALMEKMSEC--GFLKCPLP 82 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 82 (415)
.+.+.-.+...|.++.|+-+.+.+... .|+. .++..+.+++...|++.+|...|++.++. .+..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455566666777776665553332 2221 14455666677777777777777765431 11111111
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
...+.. ....... ...+.+...---+..+|.+.+++++|+.+++.+...
T Consensus 103 ~~~~~~----~ss~p~s--------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTGN----SASTPQS--------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----cCCCccc--------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111100 0000000 001233445455888999999999999999876544
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.00 E-value=10 Score=35.36 Aligned_cols=306 Identities=8% Similarity=-0.007 Sum_probs=152.0
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 21 AQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+++.+++..-+.++.. . +.+...-+....+....|+..+|......+-..| ...+..+..++..+.+.|.+....
T Consensus 81 ~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 34567777777775554 2 1355555666777777888877777777766655 345667777777777776654432
Q ss_pred HHHHHHh---------------hcCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHh
Q 014978 101 QMLQELK---------------KNTSPDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPDWIS---YSTLTSLYIK 161 (415)
Q Consensus 101 ~~~~~~~---------------~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~ 161 (415)
++.+|. ...+++...+ ..++... .++..+...... ..++... +...+.-+.+
T Consensus 157 -~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 157 -YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh
Confidence 222221 1122221111 1111111 111111111111 1122221 1112222222
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVA----YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 237 (415)
.+.+.|...+....+.. ..+... +..+...+...+...++...+...... .++.......+....+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 36778888887776443 223222 222333333444344555555554332 2233333344444556788888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC------------CCCC-------C---Hh-----
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK------------GIKP-------C---YT----- 290 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~p-------~---~~----- 290 (415)
|...|..+.... .......-.+..++...|+.++|..+|..+... |..+ + ..
T Consensus 304 a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (618)
T 1qsa_A 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (618)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccC
Confidence 888887765422 112333445666777778888888877776432 1110 0 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
.-..-+..+...|....|...|..... . .+......+.......|.++.+....
T Consensus 383 ~~~~r~~~L~~~g~~~~a~~ew~~~~~---~--~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 383 PEMARVRELMYWNLDNTARSEWANLVK---S--KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---T--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHCCChhhHHHHHHHHHh---c--CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 011223445667777777777777655 1 23333334444455566666655444
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.63 E-value=2.9 Score=29.58 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.+.-++.+.|+++.|.++.+.+++
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555444
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.25 E-value=2.4 Score=29.99 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 270 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.-+..+-++.+...++.|++......+.+|.+.+|+..|.++|+-...+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHH
Confidence 3456666777777777888888888888888888888888888877662 333344555554
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.23 E-value=7.3 Score=32.53 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK---GQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
.++.....+...|.+.|++.+|...|-.-. .-+...+..++.-+... |...++--++.+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 356677788888888888888877664111 11345555555554444 443332222222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.++ -|...|+...|..+++...
T Consensus 194 --aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 --LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp --HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred --HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 2445678888888877654
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.89 E-value=6.5 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=34.7
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
++..+...|.+.|++++|.+.|.++... ...-...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666666666666666666666543 22233455555666666666666666665553
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.98 E-value=3 Score=27.64 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+.|++++|..+.+.+. .||...|..|... +.|.-+.+...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 444555555555444332 4555555444332 4455555555554444444
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.54 E-value=7.2 Score=28.01 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 286 KPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|+..+--.+.+++.+..+. .+++.+++..... .-.-...-...|..++.+.|++++|+++.+.+.+..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 46666766777777777654 4677777777662 2111233445566678888888888888888888888764
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.97 E-value=15 Score=32.44 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665432111 12334445555555556665555555543
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.88 E-value=5.5 Score=32.21 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+.|+++.++.....-++..+ -|...-..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566677777766666665532 2555566666777777777777776666655
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.25 E-value=2.9 Score=27.71 Aligned_cols=50 Identities=6% Similarity=0.035 Sum_probs=21.9
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+.|++++|..+.+.+. .||...|..|... +.|.-+.+...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 344455555544433322 4444444443332 4444444444444444443
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.00 E-value=9.6 Score=30.85 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCC-C-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 014978 20 VAQAQALQTRARENFFENLPDKM-R-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (415)
...++.|+.+....+++.-.... . +... .+.+...+..|+.+- ++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~~----v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGG-WTPLHNAVQMSREDI----VELLLRHGADPV 66 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTTC-CCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 34567777777766666532211 1 1111 233444555666653 344444554443
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.98 E-value=22 Score=29.94 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH----HHHHHHHcccccChhhHHHHHHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR----IWKKMMSLFAKMNDAEYTCVISS 228 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 228 (415)
.++..=|.+.+++++|.+++..-. ..+.+.|+...+-+ +++-..+.++++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444666777777777654321 11222333333222 22333444555555555555555
Q ss_pred HHhcCChH-HHHHHHHHHHh----cc--CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 229 LVKLGEFE-KAENIYDEWES----IS--GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 229 ~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
+.....-+ .-.++++.+.+ .| ...|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHH
Confidence 54433211 11222332222 22 23456677778888888888888887762 2 223344666666655544
Q ss_pred cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 302 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.+...++ +...-..++ -|...++...|..+++...
T Consensus 180 ~~~~~e~----------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTA----------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGH----------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccH----------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4432222 122222222 2555677888877665554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.08 E-value=9.8 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 122 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+...|++++|..+.+... .||...|.+|.. .+.|..+++...+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455666666665554332 455555544432 34555555555555555544
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.96 E-value=7.4 Score=31.50 Aligned_cols=52 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+.|++++++.....-++.. +.|...-..++..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555444444442 33444444455555555555555555444444
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.59 E-value=14 Score=26.61 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELP---EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.|+..+--.+..++++..+. .+++.+++++.+.+..-.......+.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555544555555555443 24555555555432111222333444555666666666666666655
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.87 E-value=9.2 Score=25.37 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=23.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
.+...|++++|..+.+... .||...|.+|.. .+.|..+++...+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555555443322 344444433322 34455555555555554443
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.63 E-value=40 Score=29.27 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHcc--cccChhhHH---
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKN-----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMNDAEYT--- 223 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~--- 223 (415)
.++..|...|++.+|.+++.++.+.=-..| ...+-.-++.|...+++.++...+....... +.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666666666666666666654210111 1234444556666666666666666554431 212222211
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHH
Q 014978 224 -CVISSLV-KLGEFEKAENIYDEW 245 (415)
Q Consensus 224 -~l~~~~~-~~g~~~~a~~~~~~~ 245 (415)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1112234 566666666665554
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.07 E-value=35 Score=28.43 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=62.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCChH-HHHHHHHHHHHc----c--cccChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKD-EVLRIWKKMMSL----F--AKMNDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
++...+.+.+++......++..+.....-+ .-.++++++++. | ...+......+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344444555666655555555554422111 123333443322 1 123556677888888888999888876642
Q ss_pred HHhccCCCCCchHHHHHHHHHhc---CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 245 WESISGTGDPRVPNILLAAYINR---NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+-.-+...+..++.-+... |...++--++ ...+-.|.-.++...|..+++...+
T Consensus 160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1000233444444433333 3332221111 1122234556788888877776543
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.62 E-value=42 Score=29.10 Aligned_cols=232 Identities=11% Similarity=0.071 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKT-KIDP---DWISYSTLTSLYIKM-ELPEKAATTLKEMEKRTCRKNRVAY--- 187 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 187 (415)
+...|...|.+.|+.++..+++...... +..| .......+++.+... +..+.-.++..+..+.. ..+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4556667777777777777776655422 1111 122344556665553 33333444444443321 1111223
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHHHHHcccccChh-----hHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCCCchH
Q 014978 188 ---SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-----EYTCVISSLVKLGEFEKAENIYDEWESI--SGTGDPRVP 257 (415)
Q Consensus 188 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 257 (415)
..++..|...|++.+|.+++.++.+.-...|.. ++..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 257889999999999999999988752222222 4666678888999999999999887643 222344333
Q ss_pred HH----HHHHHH-hcCcHHHHHHHHHHHHhC-C-C-CCC---HhHHHHHHHHHHhcCCHHHHHHHHH-HhHhcccCCCCC
Q 014978 258 NI----LLAAYI-NRNQLEMAESFYNRLVTK-G-I-KPC---YTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPD 325 (415)
Q Consensus 258 ~~----l~~~~~-~~g~~~~a~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~p~ 325 (415)
.. -...+. ..+++..|...|-+..+. . . .|. ...|..+ +-.-.++..+...++. .... .-..|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~--~~~~pe 255 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAI--TYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHH--TTCSHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhcccccc--ccCCcc
Confidence 22 233455 688999998877766421 0 0 111 1122222 2222333333333322 1111 112455
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 326 HRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
...+..++.++ ..+++.....+++...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 55566666654 4567777766666543
No 273
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.44 E-value=35 Score=28.36 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCH
Q 014978 292 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 292 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 360 (415)
...++.-|...|+.++|...++++.. ..+. ...+...+..++-+.++ .+....++..+.+.+..+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~--p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV--PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 34567777777888888888887643 1111 12223333444444322 3456677777777676654
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.32 E-value=27 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc
Q 014978 165 PEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (415)
..++..+|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445555555544443322 2234444444445555555555555554444443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.32 E-value=31 Score=26.51 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 014978 127 QNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (415)
.++..++..+|..|...|+-.. +..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3445677777777777665433 34566777777777777777777777777655553
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=72.31 E-value=17 Score=26.79 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHH-H-----HHhcCcHHHHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLH-S-----YVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 73 (415)
..+..++.+...|++-+|.++|+.+....+. ...|..||+ . ..+.|+...|..++.+...
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678888888889999999999998876433 356667776 2 3468999999999988765
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.12 E-value=38 Score=30.51 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC----Hh---HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD----VV---TYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
..+|.+++.|...+.++.|..+..+.. .|.+ .. .+-.+...+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456777888888888888888888764 2222 11 1233456677788888888888887765
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.66 E-value=26 Score=25.47 Aligned_cols=51 Identities=12% Similarity=-0.026 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 014978 133 AEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (415)
+..+|..|...|+-.. +..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666654333 33556666666666666666666666666554443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.71 E-value=17 Score=29.40 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=10.8
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCC
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPC 288 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~ 288 (415)
..++.....++.+.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34443334445555555554443
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.50 E-value=53 Score=27.68 Aligned_cols=139 Identities=10% Similarity=0.073 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH----HHHHHHhccCCCCCchHHHH
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN----IYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l 260 (415)
.+|.++..-|.+.+++++|++++..--.. +.+.|+...|-+ +++-..+.+.+++......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~---------------ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT---------------LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34566677788889999999886543221 222233222222 22333334445555444444
Q ss_pred HHHHHhcCc--------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 261 LAAYINRNQ--------LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 261 ~~~~~~~g~--------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..+..... +++|.++-... .....-|+.....+...|.+.+++.+|...|- . +..+....+..+
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l----g~~~s~~~~a~m 173 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L----GTKESPEVLARM 173 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T----SCTTHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h----cCCchHHHHHHH
Confidence 444443322 12222222221 11123467778888899999999999988873 2 334455777666
Q ss_pred HHHHHHcCChhHH
Q 014978 333 YNKLEEQGDIDGA 345 (415)
Q Consensus 333 ~~~~~~~g~~~~a 345 (415)
+.-+...+...++
T Consensus 174 L~ew~~~~~~~e~ 186 (336)
T 3lpz_A 174 EYEWYKQDESHTA 186 (336)
T ss_dssp HHHHHHTSCGGGH
T ss_pred HHHHHHhcCCccH
Confidence 6666555444433
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.29 E-value=31 Score=24.98 Aligned_cols=57 Identities=9% Similarity=0.265 Sum_probs=40.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 350 VTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.+.|...+.--..++..+...+.. +.++++.+++.+-..+..|. +.|..+.+.+
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445667777776677777777766554 68888888888777788885 7888888877
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.80 E-value=43 Score=26.53 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44444555566666666666666665443
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.86 E-value=18 Score=29.63 Aligned_cols=145 Identities=9% Similarity=-0.055 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh---hHHHHHHHHHhc
Q 014978 156 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA---EYTCVISSLVKL 232 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 232 (415)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+.. +.+.|..++.. -.+ .+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 444555677665544443 3433333222233444455666554433 34445544332 122 23344566
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
|+.+-+..+++.-.... ..+..-+.+.+...+..|+.+-+ +.+.+.|..+ +...-...+...+..|..+-+.-+
T Consensus 106 g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp TCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 77665555554411111 11222223344445556665433 3344444333 221222333344566777666555
Q ss_pred HHH
Q 014978 312 FKK 314 (415)
Q Consensus 312 ~~~ 314 (415)
++.
T Consensus 181 l~~ 183 (285)
T 3kea_A 181 LDY 183 (285)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.58 E-value=8.9 Score=30.08 Aligned_cols=10 Identities=10% Similarity=-0.081 Sum_probs=4.5
Q ss_pred HhcCcHHHHH
Q 014978 56 VQNKKSAEAE 65 (415)
Q Consensus 56 ~~~~~~~~a~ 65 (415)
++.|+++...
T Consensus 17 ~~~g~~~~~~ 26 (240)
T 3eu9_A 17 TQYGIYERCR 26 (240)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCChHHHH
Confidence 3455554333
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=64.20 E-value=46 Score=25.45 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=19.8
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
+..+++.|+-++-+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 544444444444444444
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.99 E-value=36 Score=24.46 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 350 VTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.+.|...+.--..++..+...+.. +.++++.+++.+-..+..|. +.|..+.+.+
T Consensus 11 ~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 345566766655566666666655443 67788888877777777775 7888777776
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.46 E-value=29 Score=25.61 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 133 AEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
+..+|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5556666666664333 335566666666677777777777776666555543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.32 E-value=21 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=26.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcC-CCCcchHHHHHHHHHhcCcHHHHHHHH
Q 014978 21 AQAQALQTRARENFFENLPDK-MRGPDTCSALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 68 (415)
..++.|+.+....+++.-... .++... .+.+...+..|+++-+.-++
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKEN-VTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCC-CCHHHHHHHhCCHHHHHHHH
Confidence 457788888887777753322 122222 23445566677776444443
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.29 E-value=43 Score=30.23 Aligned_cols=67 Identities=7% Similarity=0.132 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc------H-HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP------Y-NHMLNLYISNGQLDKVPQMLQELKKNTSPDV 114 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (415)
...+|.+++.|...+.+++|..+..+..- +.+... | -.+...+.-.+++.+|.+.|.......|++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35688999999999999999999998752 222111 2 2234566778999999999999877655543
No 290
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.18 E-value=51 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014978 123 ACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~ 142 (415)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555554443
No 291
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=62.89 E-value=58 Score=26.16 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHhcc-cCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHH
Q 014978 305 MEKVLECFKKAIGSV-RKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+.+...|+.+.... ..++|+..+...|+- .|--.+++++|.++-++..+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666655421 357776655444432 24457888888887766544
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.40 E-value=62 Score=26.28 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=7.8
Q ss_pred HHHHhcCcHHHHHHHH
Q 014978 53 HSYVQNKKSAEAEALM 68 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~ 68 (415)
...+..|+.+-+..++
T Consensus 36 ~~A~~~g~~~~v~~Ll 51 (285)
T 3kea_A 36 YYAIADNNVRLVCTLL 51 (285)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344466665444443
No 293
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=60.17 E-value=66 Score=25.89 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHhcccCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHc
Q 014978 305 MEKVLECFKKAIGSVRKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.+.+...|+.+......++|+..+...|+- .|--.++.++|.++-++..+.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456667777766533346777665444432 344578999998887776553
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.70 E-value=27 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=33.8
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcC-CC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 352 LRNAGHVSTEIYNSLLRTYAKAG-KM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~g-~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.|...+.--..++..+...+ .. +.++++.+++.+-..+..|. +.|..+.+.+
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44556655555555566665544 33 57777777777666677774 6777776665
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=59.47 E-value=28 Score=26.27 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcC--CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 014978 21 AQAQALQTRARENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (415)
..+..|+.+....+++.-... .++..-++. +...+..|+.+ +++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCC
Confidence 456778888877777654321 122222333 33344556655 3344444554443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=59.39 E-value=13 Score=29.78 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcc-------cHHHHHHHHH--hcCCcCcHHHHHHH
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCPL-------PYNHMLNLYI--SNGQLDKVPQMLQE 105 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~ 105 (415)
..++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445566666666666655555444422 2233333322 44555555555544
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.53 E-value=26 Score=25.26 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 351 TLRNAGHVSTEIYNSLLRTYAKAGKM-PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~-a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
.+.+.|...+.--..++..+...+.+ |.++++.+.+.+-..+..|. +.|..+.+.+
T Consensus 9 ~L~~~g~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 44455665544445555555555522 56777777777666677774 6777766666
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.43 E-value=93 Score=27.07 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=91.3
Q ss_pred HHHHhhhhHHHHHHHHhcCcCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCCc
Q 014978 21 AQAQALQTRARENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQL 96 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 96 (415)
..+..|+.+-...+++.-.... .+... .+.+...+..|+.+-+.-+++ .|..++. ...+ .+...+..|+.
T Consensus 20 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~g~~ 93 (437)
T 1n11_A 20 VASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQT-PLHCAARIGHT 93 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCSSSCC-CCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCC-HHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCC-HHHHHHHCCCH
Confidence 4577888888888777532211 12222 233455556788775555544 3433322 1222 33444556665
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+-+.-+++.-......+..-. +.+...+..|+.+.+..+++.-.... ..+..-. ..+...+..|+.+-+.. +.
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~-t~L~~A~~~g~~~~v~~----Ll 166 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQA-CMTKKGF-TPLHVAAKYGKVRVAEL----LL 166 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSC-CHHHHHHHTTCHHHHHH----HH
T ss_pred HHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCC-CHHHHHHHcCCHHHHHH----HH
Confidence 544444433111011122222 23445566777766655554321111 0111111 23344456676654433 33
Q ss_pred hcCCCCCHH---HHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhH--HHHHHHHHhcCChHHHHHHHH
Q 014978 177 KRTCRKNRV---AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY--TCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 177 ~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~ 243 (415)
+.|..++.. ..+. +...+..|+.+ +++.+.+.|..++...+ ...+...+..|+.+-+..+++
T Consensus 167 ~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 444433321 1222 23334456554 34444455544433211 123344556777665555543
No 299
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=58.39 E-value=67 Score=25.40 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHhcc-cCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHH
Q 014978 305 MEKVLECFKKAIGSV-RKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+.|...|+.+.... ..++|+..+...|+- .|--.++.++|.++-++..+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666665422 246776665444432 24457899988887776654
No 300
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.87 E-value=70 Score=25.50 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHhcc-cCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHH
Q 014978 305 MEKVLECFKKAIGSV-RKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+.+...|+.+.... ..++|+..+...|+- .|--.++++.|.++-++..+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666654421 257776665544432 24457888888887766544
No 301
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=57.37 E-value=70 Score=25.30 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=34.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-LGEFEKAENIYDEWES 247 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 247 (415)
.+....-+.+++++..+..+.+.+.+...+..--+.|-.+|-. .|....+++++..+.+
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieq 72 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQ 72 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3445556667777777777777666666565555555555532 3555566666665543
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.68 E-value=40 Score=24.82 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC--CCCCCHHHH-HHHHHhccCC
Q 014978 352 LRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD--NVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~--~~~p~~~t~-~~l~~~~~~~ 406 (415)
+.+.|...+.--..++..+...++. |.++++.+.+. +...+..|. +.|..+.+.+
T Consensus 24 L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 24 LRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344555444445555555554433 46666666655 555565553 5666666555
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=56.12 E-value=58 Score=23.97 Aligned_cols=53 Identities=4% Similarity=-0.044 Sum_probs=30.7
Q ss_pred hcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHH-H-----HHhcCCHHHHHHHHHHhHhc
Q 014978 266 NRNQLEMAESFYNRLVTKGIKP--CYTTWELLTW-G-----YLKKGQMEKVLECFKKAIGS 318 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~ 318 (415)
+.|++-+|-++++..-.....| ....|..||+ . ..+.|+...|..++.++...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3466667766666665543333 3344555555 1 23467777777777776653
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.69 E-value=35 Score=24.70 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC-CC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 351 TLRNAGHVSTEIYNSLLRTYAKAG-KM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g-~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
.+.+.|...+.--..++..+...+ .. +.++++.+.+.+-..+..|. +.|..+.+.+
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 355566665555555566665544 33 67777777777767777774 7777777766
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.14 E-value=67 Score=24.81 Aligned_cols=35 Identities=17% Similarity=-0.060 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
..+++.|+-++-+|++.|..|....-..++.+...
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 35556666666666655554444333344444333
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.08 E-value=58 Score=23.68 Aligned_cols=50 Identities=6% Similarity=-0.054 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc
Q 014978 168 AATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (415)
+..+|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5556666655554332 3335555555566666666666666665555444
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.89 E-value=51 Score=25.61 Aligned_cols=27 Identities=0% Similarity=-0.134 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 014978 156 TSLYIKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
+...++.|+.+-+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344455566666666665555544433
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.69 E-value=46 Score=24.05 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=33.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
.+.+.|++++..-. .++..+...+.+-.|.++++.+.+.++..+..|....+..+...|-.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34455555444322 34455555555666777777776665555555555555566665543
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.45 E-value=70 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 014978 123 ACASQNDKETAEKAFLEL 140 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~ 140 (415)
.|.+.|.+++|.++|++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 344444444444444443
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.80 E-value=47 Score=23.84 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
+.+.|++++..-. .++..+...+.+-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555444332 2334444444555566666666555544455554444555555543
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.72 E-value=48 Score=23.45 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
+.+.|++++..-. .++..+...+ .+-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666555433 3445555555 5667777777777766655666655555666665543
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=53.37 E-value=1.2e+02 Score=26.89 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=66.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 137 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (415)
..+.+-|.++-. +.|++--...|..-...+...|++++|.++-....++.-.+..|.+.+-.+=...|+..-.+.+|
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 466666655543 34444344456666777778888888887777766665666666666555545556666667777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 138 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
..+.+.| ..+..---.+++.-...|+.+-..+++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 7777666 3444333344555555555555554443
No 313
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.25 E-value=35 Score=26.59 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=13.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC
Q 014978 122 AACASQNDKETAEKAFLELKKTKI 145 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~ 145 (415)
...+..|+.+.+..+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334455666666666655554443
No 314
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=53.18 E-value=20 Score=25.56 Aligned_cols=54 Identities=6% Similarity=0.041 Sum_probs=32.6
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 353 RNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
++.|...+.--..++..+...+.. +.++++.+.+.+-..+..|. +.|..+.+.+
T Consensus 6 r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 6 PPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444455556666555444 57777777777777777774 7777777766
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=52.06 E-value=55 Score=24.99 Aligned_cols=100 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHcC---CChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC-----hHHHHHHHHHHHhccCCCCC
Q 014978 183 NRVAYSSLLSLYTNM---GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE-----FEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 254 (415)
+.....-+|+++.++ .+++.|+-++-+|++.|..|....-..++.+....|. ...|...++.....|.+--.
T Consensus 3 ~Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 82 (201)
T 3bge_A 3 LGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGE 82 (201)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHH
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
......+..++.+-+...+...++...+
T Consensus 83 i~LaqaviyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 83 RAIAQAIIYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
No 316
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=51.84 E-value=93 Score=25.06 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHhcc-cCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHH
Q 014978 305 MEKVLECFKKAIGSV-RKWVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+.+...|+.+.... ..++|+..+...|+- .|--.++.++|.++-++..+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666666655422 247776665544432 34457899888887776544
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.42 E-value=1.8e+02 Score=28.84 Aligned_cols=107 Identities=18% Similarity=0.122 Sum_probs=61.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC--------------
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-------------- 325 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-------------- 325 (415)
++..+...|..+-+.++..- ++-++..--.+..+|...|++++|..+|+++.. ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~---gl~~~~~~~~~~~~~~~ll 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFAVLREFQEIA 887 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---TTCSSCCSCGGGHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hcccCcccccchhhhhhcc
Confidence 55555666666655443221 122333223456677888888888888887653 22110
Q ss_pred ---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C----HHHHHHHHHHHHhcC
Q 014978 326 ---------HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-S----TEIYNSLLRTYAKAG 374 (415)
Q Consensus 326 ---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g 374 (415)
..-|..++..+.+.+-++.+.++-+.+++.-.. + ...|..+.++.+..|
T Consensus 888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 113566777777777777777777777763322 2 245666666666544
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.34 E-value=46 Score=26.05 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=54.9
Q ss_pred cHHHHHHHHhhc------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 014978 98 KVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 98 ~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
.-..++++..+. ...|......-+...-. .+.+..+|..|...|+-.. +..|......+...|++.+|.+
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666665433 34454444443332222 2567788888888876544 4467788888888999999999
Q ss_pred HHHHHHhcCCCCCH
Q 014978 171 TLKEMEKRTCRKNR 184 (415)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (415)
+|+.-++.+-.|-.
T Consensus 172 Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 172 VYQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHHTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99988887666643
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=51.28 E-value=1.1e+02 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHh
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELK 107 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (415)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556667777788888877777764
No 320
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.02 E-value=49 Score=23.91 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
.+.+.|++++..-. .++..+...+ .+-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34556666554433 3444554444 5666777777777666555666655556666666543
No 321
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.64 E-value=1.4e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+......++.. -.|+..++..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344444444443 35666666666666553
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.25 E-value=19 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 014978 124 CASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g 144 (415)
.++.|+.+....+++.+.+.|
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 344455555555555444443
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.39 E-value=76 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=8.1
Q ss_pred HHHHHhcCCcCcHHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQEL 106 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~ 106 (415)
+.-|...|+.++|...++++
T Consensus 16 L~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHh
Confidence 33333344444444444443
No 324
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.37 E-value=1.3e+02 Score=25.68 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCH-HHHHHHHH
Q 014978 292 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVST-EIYNSLLR 368 (415)
Q Consensus 292 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 368 (415)
...++.-|...|+.++|...++++.. ..+. ...+...+..++-+.++ .+...+++..+...+..+. .....+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~--p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV--PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC--Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45667777778888888888877643 1111 12233344444444332 3456677777777776643 33444444
Q ss_pred HHH
Q 014978 369 TYA 371 (415)
Q Consensus 369 ~~~ 371 (415)
.+.
T Consensus 297 vl~ 299 (358)
T 3eiq_C 297 IYN 299 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 325
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.99 E-value=92 Score=23.62 Aligned_cols=111 Identities=12% Similarity=-0.028 Sum_probs=45.8
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
++...-...+..+.+.|.. .+...+..+... ++...-...+.++.+.+.. .+...+..+.. .++...-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--~~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK--DEDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc--CCCHHHHHHHHH
Confidence 4444444445555555542 223333333331 3333334444445444432 22233322221 344444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
++.+.++.+. ...+..+.+ .++..+-...+.++.+.+.
T Consensus 104 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 104 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 5555554332 222222332 2344444444555554444
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.25 E-value=85 Score=23.03 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=40.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--ccccChhhHHHHHHHHHhcCChH
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL--FAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
+.+.|++++..- ..++..+...+.+-.|.++++.+.+. ++..+..|...-+..+...|-..
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 445676665543 34566666667777888888888777 66666666665666777776543
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.10 E-value=87 Score=23.11 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc
Q 014978 168 AATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (415)
+..+|..|..+|+-.. ...|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444555554443322 2234444444455555555555555555544444
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.80 E-value=50 Score=24.76 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCCCC
Q 014978 274 ESFYNRLVTKGIKPC 288 (415)
Q Consensus 274 ~~~~~~~~~~~~~p~ 288 (415)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344455555554443
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.77 E-value=1.1e+02 Score=24.01 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc
Q 014978 166 EKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (415)
+++..+|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677877877765443 4456677777778888888888888887776665
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.47 E-value=46 Score=23.90 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
+.+.|++++..-. .++..+...+ +-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555544322 2333333334 45566666666655554455554444455555543
No 331
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.40 E-value=1.4e+02 Score=24.96 Aligned_cols=132 Identities=8% Similarity=0.025 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC----C----cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR----G----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
-++.|..+.+.|++++|+..|+.+...-| + ..-...+|..+ ..+--|..+ ++.++.++.+...-+.-
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic---rEYilal~i--El~Rr~l~~~~~kR~lE 191 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETA---REYILGLSI--ELERRSLKEGNTVRMLE 191 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTCCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHhcCcccHHHHHH
Confidence 46677788999999999999998766421 0 11122222222 123333333 33333333333233334
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+.+|...-+++-...+ -+....|....+.+++..|..+-+++++.+..++ ..+
T Consensus 192 LAAYFT~c~LQp~H~~------------LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~ 244 (325)
T 3mv2_A 192 LAAYFTKAKLSPIHRT------------NALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAE 244 (325)
T ss_dssp HHHHGGGSCCCHHHHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHH
T ss_pred HHHHhccCCCcHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHH
Confidence 4444444443333322 2456677788899999999999999998753222 235
Q ss_pred HHHHHHHHHHhc
Q 014978 167 KAATTLKEMEKR 178 (415)
Q Consensus 167 ~a~~~~~~~~~~ 178 (415)
+|.+++....+.
T Consensus 245 qArkil~~ce~~ 256 (325)
T 3mv2_A 245 QARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC
Confidence 566666666554
No 332
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.84 E-value=1.1e+02 Score=23.37 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCcCCCCcc------hHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 014978 28 TRARENFFENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSEC 74 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~ 74 (415)
.+.|+.+|+.+....++.. .--..+..|.+.|.+++|.++|++.-..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 5677888877776543111 0112344577777788887777775543
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.56 E-value=1.5e+02 Score=24.57 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHhHh
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--MEKVLECFKKAIG 317 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 317 (415)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 356888899999999999999998631111 12233333444433322 3455667766665
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.67 E-value=54 Score=21.55 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.+.++|.++++.+..+| | .+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHH
Confidence 46677777777777765 2 4566777777655554433
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.47 E-value=68 Score=19.97 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
+.+.|+..+..-. .++..+...+ .+-.+.++++.+.+.++..+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444544444332 3334444332 34445555555555444444444444444444444
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.78 E-value=99 Score=21.62 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=8.1
Q ss_pred HHHHHhcCCcCcHHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQEL 106 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~ 106 (415)
+.-|...|+.++|.+.++++
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 33333344444444444443
No 337
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.63 E-value=1.7e+02 Score=24.37 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-Cc-------chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CcccH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GP-------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK---CPLPY 83 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 83 (415)
-++.|..+...|++++|+..|+.+...-| .. .-...++..+ ..+--|..+ ++.++.++. +...-
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic---reYilal~i--El~Rr~l~~~~~~~~kR 179 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITIC---REYIVGLSM--ETERKKLPKETLEQQKR 179 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHH---HHHHHHHHH--HHHHTTSCCCSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHhcccCCchhHHH
Confidence 46778888999999999999998766432 10 0112222222 122223222 232232221 11122
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+.-+.+|...-+++-...+ -+....|....+.+++..|..+-+++++.+ |+..
T Consensus 180 ~lELAAYFT~c~Lqp~H~~------------LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~------------- 232 (320)
T 3mkr_B 180 ICEMAAYFTHSNLQPVHMI------------LVLRTALNLFFKLKNFRTAAAFARRLLELG--PKPE------------- 232 (320)
T ss_dssp HHHHHHHHTTSCCCHHHHH------------HHHHHHHHHHHHTTBHHHHHHHHHHHHHTC--CCHH-------------
T ss_pred HHHHHHHhccCCCcHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHH-------------
Confidence 2233334333333332222 245666777888999999998888888874 3322
Q ss_pred CHHHHHHHHHHHHhc
Q 014978 164 LPEKAATTLKEMEKR 178 (415)
Q Consensus 164 ~~~~a~~~~~~~~~~ 178 (415)
..++|.+++....+.
T Consensus 233 ~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 233 VAQQTRKILSACEKN 247 (320)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 224566666666554
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.47 E-value=64 Score=19.39 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 331 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
-++..+....-.+.++..+.++.+.|..+...|..-++..++.
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3444444444455566666666666655655555555555444
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.03 E-value=67 Score=25.32 Aligned_cols=54 Identities=19% Similarity=0.085 Sum_probs=28.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhc---CCcCcHHHHHHHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCP-------LPYNHMLNLYISN---GQLDKVPQMLQEL 106 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~ 106 (415)
+...+..|+.+.+..+++.+.+.|..++. .-++.|.. .+.. |+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcC
Confidence 33445567777666666666666544332 22333333 3333 6666666665543
No 340
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.77 E-value=1.1e+02 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=10.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 341
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.67 E-value=78 Score=24.45 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=13.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 014978 261 LAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+......|+...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556677777777666654
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.28 E-value=40 Score=19.83 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
++|.+.|.+|++..-.++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554443333444555555444
No 343
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.05 E-value=1.2e+02 Score=25.52 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
..+..|+.+- .+.+++.|..++.. -.+.| ...+..|+.+-+.-+++.
T Consensus 217 ~A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 217 WAILINWEDV----AMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTTTCHHH----HHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 3445666543 33444555544322 22223 233455666666555554
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.80 E-value=1.4e+02 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
...++.=|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777788888877777664
No 345
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.49 E-value=2.1e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHhHh
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--MEKVLECFKKAIG 317 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 317 (415)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 467788899999999999999988642111 12233444444444333 3456667766665
No 346
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.11 E-value=1.5e+02 Score=22.24 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred CCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 321 KWVPDHRLITA--AYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 321 ~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
...|...+|.. ....|...|..++...+|..+++.+|.
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 45677766543 344577899999999999999887764
No 347
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.55 E-value=1.6e+02 Score=22.47 Aligned_cols=19 Identities=0% Similarity=-0.178 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 014978 156 TSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~ 174 (415)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666655554
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.51 E-value=1.5e+02 Score=22.10 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 014978 161 KMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~ 181 (415)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 334333333444444444433
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.27 E-value=3.7e+02 Score=26.64 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 128 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (415)
..++..+...|.++-+.++...+. .++..--.+..+|...|++++|.+.|++.......+......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG---------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc---------
Confidence 346777788888887765443332 232222345678888999999999998876542211100000
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcC
Q 014978 129 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNM 197 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 197 (415)
......++.... .. .....-|..++..+-+.+.++-+.++-+...+.--..|. ..|+.++++.+..
T Consensus 880 -~~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 -LREFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -GHHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 001111111111 10 112236777888888888888888777777654212222 3466666665543
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.77 E-value=59 Score=23.11 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=29.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
.++..+...+.+-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555556666777777777666655666655556666666543
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.10 E-value=2.7e+02 Score=24.76 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.|..-.+.+...|++++|.++--...+ |.-.+..|.+.+-.+=...|...-...+|..+.+.| ..+..--.-+++.-.
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 344444455555666655554433221 222233333333222222344444555555555444 223322223344444
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 352 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (415)
..|+.+-..+++.+ .++..+...=..+ +..+...|..+|.+.
T Consensus 441 ~q~r~~llekWl~e-----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 441 QQGRKQLLEKWLKE-----DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HTTCHHHHHHHHHH-----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hccHHHHHHHHHhc-----CCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 55555555555544 3444444432222 233455555555544
No 352
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.66 E-value=1.9e+02 Score=22.81 Aligned_cols=21 Identities=0% Similarity=-0.102 Sum_probs=11.2
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~ 211 (415)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555444
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.50 E-value=64 Score=22.59 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=24.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
++..+...+.+-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444445555666666666665555555555545555555553
No 354
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.42 E-value=1.3e+02 Score=20.94 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=11.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 355
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.34 E-value=2.2e+02 Score=23.45 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcC-CCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 014978 19 RVAQAQALQTRARENFFENLPDK-MRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (415)
....++.|+.+-...+++.=..- .++.. -++. +...+..|+.+- .+.+.+.|..++
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~i----v~~Ll~~ga~~~ 86 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDI----VELLLRHGADPV 86 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHHH----HHHHHHcCCchh
Confidence 44567888888887777652221 01111 2233 334455677653 344445554443
No 356
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.31 E-value=1.8e+02 Score=22.46 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
-.+++.|+-++-+|++.|-.|.-..-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456666666666666665444433333333333
No 357
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.28 E-value=1.7e+02 Score=22.26 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=8.0
Q ss_pred cCCChHHHHHHHHHHHHcc
Q 014978 196 NMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~ 214 (415)
..|+.+-+..+++.+.+.|
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHhcC
Confidence 3344444444444444433
No 358
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=29.65 E-value=49 Score=22.26 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPD 40 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 40 (415)
.+..++..++.|++++|.+.++...+
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556667788888888777776554
No 359
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.59 E-value=1.1e+02 Score=19.41 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=7.6
Q ss_pred HHcCChhHHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVTL 352 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~ 352 (415)
-+.|++++|..+|...
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3445555555444443
No 360
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.95 E-value=3e+02 Score=24.25 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=20.7
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 299 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 299 (415)
+.++.+.|..++.+|.+.|..|....-..+..+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3467778888888888777655443333333333
No 361
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.69 E-value=1.9e+02 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCC
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~ 285 (415)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444455666655555555555543
No 362
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=28.65 E-value=52 Score=22.02 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPD 40 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 40 (415)
.+..++..++.|++++|.+.++...+
T Consensus 21 ~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 21 LAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556677888888888888776654
No 363
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.50 E-value=37 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=10.9
Q ss_pred ChhHHHHHHHHHHHcCCCCH
Q 014978 341 DIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~ 360 (415)
|++.|...|.++...|-.|+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCG
T ss_pred CHHHHHHHHHHHHHcCCCCH
Confidence 45566666666555444443
No 364
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.19 E-value=1.9e+02 Score=21.67 Aligned_cols=28 Identities=7% Similarity=-0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 356 (415)
++.+...|...|+.++|+..+..--...
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 3444455556666666666665544433
No 365
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=27.31 E-value=2.9e+02 Score=23.71 Aligned_cols=66 Identities=5% Similarity=0.008 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHhcCC--cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 79 CPLPYNHMLNLYISNGQ--LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+..+|..++.-+....+ .+++..+++.+....-++...=..|+....+-...++...+.+.|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 44578888877776555 4678888888877755666666666666777777788777777776654
No 366
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.99 E-value=3.4e+02 Score=24.42 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=35.8
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
...++.|...|.+.....|.+...||.|+-.....|+.-+|.-.|-+..... .|-..+...|...+.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 3445556666666555556666666666666665555555554444443332 344445555554444
No 367
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.55 E-value=1.3e+02 Score=19.09 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=7.7
Q ss_pred HHcCChhHHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVTL 352 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~ 352 (415)
-+.|++++|..+|...
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3445555555544443
No 368
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.46 E-value=1.1e+02 Score=21.39 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555556666777777777766545555555555566655553
No 369
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.33 E-value=94 Score=24.78 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=9.0
Q ss_pred HhcCCcCcHHHHHHHHh
Q 014978 91 ISNGQLDKVPQMLQELK 107 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~ 107 (415)
++.|+.+.+..+++...
T Consensus 21 ~~~g~~~~v~~Ll~~~~ 37 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQ 37 (273)
T ss_dssp HHTTCSSTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 44556555555555443
No 370
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.97 E-value=83 Score=25.13 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------CcccHHHHHHHHH--hcCCcCcHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-------CPLPYNHMLNLYI--SNGQLDKVPQMLQE 105 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 105 (415)
+..-.+.|. ..++.|+.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+..+++.
T Consensus 10 d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 10 RLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp -CCCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred CcccchHHH-HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 333334443 3445677777777777666554322 2233444444443 23555555555544
No 371
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=25.57 E-value=63 Score=21.89 Aligned_cols=26 Identities=4% Similarity=-0.060 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPD 40 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 40 (415)
.+..++..++.|++++|.+.++...+
T Consensus 25 ~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 25 FAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777788877777776544
No 372
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.44 E-value=4.9e+02 Score=25.59 Aligned_cols=160 Identities=7% Similarity=0.008 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCh---HHHHHHHHHHHHcc----cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH
Q 014978 189 SLLSLYTNMGYK---DEVLRIWKKMMSLF----AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261 (415)
Q Consensus 189 ~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (415)
.++...|..|.. +.|.+.|+.....+ +.|+.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 456666777765 45677777765532 334432 222333345677666666666665432 334455677
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHhHhcc-cCCCCCHHHHHHHHHHHHH
Q 014978 262 AAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKK-GQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~ 338 (415)
.+++...+.....++++...... +++. . ...++.+.... ...+.|.+++.+=.+.. .....+...+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQ-D-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGG-G-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchh-h-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 77777788888888887776533 3332 2 22233333332 22345555554422211 1222333445666666655
Q ss_pred cCChhHHHHHHHHHHHc
Q 014978 339 QGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~ 355 (415)
.-..++-.+-++...+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 44444444555555543
No 373
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.41 E-value=1.6e+02 Score=19.47 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555666666677666666666666665554
No 374
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=24.29 E-value=68 Score=22.16 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPD 40 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 40 (415)
.+..++..++.|++++|.+.++.+.+
T Consensus 40 ~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 40 IVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566777777777777766544
No 375
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.73 E-value=65 Score=22.31 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
|.-.|...+.+++.+-|.++++-+++.| +...|.+++-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344555556666666666666666655 44555555555555555554443
No 376
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.27 E-value=1.2e+02 Score=26.88 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchH--------H-HHHHHHHhcCcHHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--------N-ILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~-~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
..+.+...|.+.++...+..+++.+...+..|+...| . .+...++..+++.+|.+.+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 4567778888899999999998888776653333321 1 2344445566666666555443
No 377
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.23 E-value=1.9e+02 Score=21.98 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=5.3
Q ss_pred HhcCcHHHHHHHH
Q 014978 56 VQNKKSAEAEALM 68 (415)
Q Consensus 56 ~~~~~~~~a~~~~ 68 (415)
+..|+.+....++
T Consensus 14 ~~~g~~~~v~~ll 26 (231)
T 3aji_A 14 AYSGKLDELKERI 26 (231)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3344444444333
No 378
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.90 E-value=2.4e+02 Score=21.11 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=6.9
Q ss_pred CHhHHHHHHHHHHhcCC
Q 014978 113 DVVTYNLWLAACASQND 129 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~ 129 (415)
+...-...+..+.+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 379
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.77 E-value=3.7e+02 Score=23.15 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=45.4
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcC-----------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNT-----------------SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-----K 144 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g 144 (415)
+.......+.+++.+.++.+.... .........++..+...++.+.|..++++.... +
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344555667777777777653221 112334455566677777777777777766421 2
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 014978 145 IDPDW--ISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 145 ~~~~~--~~~~~l~~~~~~~~~~~~a~~ 170 (415)
..|.. ..|......|...+++..+..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22221 234444555555566555433
No 380
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.68 E-value=3.4e+02 Score=22.70 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHhcccCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcCCC
Q 014978 305 MEKVLECFKKAIGSVRKWVPDHR--LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--EIYNSLLRTYAKAGKM 376 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 376 (415)
.....++-.-+.. .+++|... +...-+....+.+++..|..+-+++++.++.+. .--..++..+-+.+..
T Consensus 186 ~kR~lELAAYFT~--c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~D 259 (325)
T 3mv2_A 186 TVRMLELAAYFTK--AKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASD 259 (325)
T ss_dssp HHHHHHHHHHGGG--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3444455444444 45555543 345556667788888888888888888877643 2244455555555443
No 381
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.38 E-value=6.7e+02 Score=26.04 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
..+++-.|++++.++.++ +|+...|..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~----k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE----KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcC
Confidence 445555555555555542 245555555555444443
No 382
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.17 E-value=5.7e+02 Score=25.15 Aligned_cols=40 Identities=15% Similarity=-0.079 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhh--HHHHHHHHhcCcCCCCcchHHHHHHHH
Q 014978 15 SYRQRVAQAQALQT--RARENFFENLPDKMRGPDTCSALLHSY 55 (415)
Q Consensus 15 ~~~~~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~li~~~ 55 (415)
.+.-+..++++|.. ..++.+...+... .+...|..++..+
T Consensus 597 li~D~~~la~ag~~~~~~~l~l~~~l~~E-~~y~~w~~~~~~l 638 (909)
T 4fke_A 597 VIYDSFNLATAHMVPVTLALDNTLFLNGE-KEYMPWQAALSSL 638 (909)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHTTGGGGGC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHccC-ccHHHHHHHHHHH
Confidence 33334455666654 4555555554432 5556666655443
No 383
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.93 E-value=1.6e+02 Score=18.51 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=11.2
Q ss_pred HHHhcCcCCCCcchHHHHHHHHHh
Q 014978 34 FFENLPDKMRGPDTCSALLHSYVQ 57 (415)
Q Consensus 34 ~~~~~~~~~~~~~~~~~li~~~~~ 57 (415)
++.+++...|+..+|+-+....-+
T Consensus 25 LL~kIPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 25 LLQRIPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp HHTTSSSCCTTTCBHHHHHHHHTT
T ss_pred HHhhCCCCCCCcchHHHHHHHHHc
Confidence 444444444455555555444433
No 384
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.58 E-value=1.3e+02 Score=17.57 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 014978 128 NDKETAEKAFLELK 141 (415)
Q Consensus 128 ~~~~~a~~~~~~~~ 141 (415)
|+++.|...+-+|.
T Consensus 37 gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 37 GNKDAAINSLLQMG 50 (59)
T ss_dssp TCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHcCc
Confidence 34444444444433
No 385
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.53 E-value=4.4e+02 Score=23.64 Aligned_cols=75 Identities=19% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
.+...-....+.|...|.......+ -+...||.|.......|+.-+|...|-+.+. -..|-......|...+.+.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P-~~G~~~nqLavla~~~~~~l~a~y~y~rsl~---~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIA---VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS---SSBCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHhcccccHHHHHHHHHHHh---cCCCChhHHHHHHHHHHHH
Confidence 3333345567899999999988632 2567999998888888988888888887776 3567777788887777653
No 386
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.24 E-value=1.9e+02 Score=20.23 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=26.0
Q ss_pred HHHHHhhhhHHHHHHHHhcCcC--CCCcchHHHHHHHHHhcCcHHHHHHHH
Q 014978 20 VAQAQALQTRARENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 68 (415)
...++.|+.+....+++..... ..+..-++.+ .. +..|+.+-+..++
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~Ll 55 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QV-MMFGSTAIALELL 55 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHH-HH-SCTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHH-HH-HHcCCHHHHHHHH
Confidence 3567788888888888872111 1233333333 33 6667766444433
No 387
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.16 E-value=1.5e+02 Score=21.77 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 118 NLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
..++.=|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555556666666666666654
No 388
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=20.91 E-value=2.6e+02 Score=20.63 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 60 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
..+.|..+++.+...|-.|....... -...+....+.++...+.-..-...+..++..+...|++..
T Consensus 64 E~~HAd~l~eri~~lGg~~~l~~i~~------p~~~~~~~~e~le~~l~~E~~v~~~~~~l~~~A~~~~D~~t 130 (176)
T 1vlg_A 64 ELTHAMKFYEYIYERGGRVELEAIEK------PPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHAT 130 (176)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCC------CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecCCCCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhH
Confidence 34567778888887776664222100 01233455555555544322233445555555555555443
No 389
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.78 E-value=2.1e+02 Score=19.99 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHHH
Q 014978 161 KMELPEKAATTLKE 174 (415)
Q Consensus 161 ~~~~~~~a~~~~~~ 174 (415)
+.|+.+.+..+++.
T Consensus 11 ~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 11 ARGDVQEVRRLLHR 24 (156)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHh
Confidence 33444444444433
No 390
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.74 E-value=1.9e+02 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..++.-|...++.++|...++++..
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4567778888888888888888753
No 391
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.66 E-value=1.5e+02 Score=23.16 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC
Q 014978 122 AACASQNDKETAEKAFLELKKTKI 145 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~ 145 (415)
...++.|+.+....+++.+.+.|.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 334455555555555555554443
No 392
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.59 E-value=2.5e+02 Score=20.37 Aligned_cols=100 Identities=13% Similarity=-0.030 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 234 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 313 (415)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 313 (415)
..+....+++.+.+.|.-.|...-..++....+.| .....+-.++..+|+ +..+....+..+.. ...+.|..++.
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI--~~~~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI--SREATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC--CHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC--CHHHHHHHHHHcCH-hHHHHHHHHHH
Q ss_pred HhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 314 KAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 314 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
+-.. ...+++......++..+.+.|
T Consensus 120 kk~~--~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 120 RKYG--EPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHC--SSCCCSHHHHHHHHHHHHHTT
T ss_pred HHcC--CCCCCCHHHHHHHHHHHHHCC
No 393
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.51 E-value=1.4e+02 Score=22.30 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
...++.++..++.-.-.++++.++.+++. .| ..+..+|..-++.+++
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~--~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLH--RG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-SSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC-CCCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555 22 2344444444444433
Done!