BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014979
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 154/300 (51%), Gaps = 53/300 (17%)
Query: 119 QPGPHESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISL 175
+P P I+C I RD+ + F + EDG LLA RK +++ ++++IS+
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 176 AANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAY 235
D SR +SY+GKLRSN +GTKFT+YD+ + P S S + L A
Sbjct: 84 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN------GVNPQKASSSTLESGTLRQELAA- 136
Query: 236 NYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSL 295
+ YE NVL +GPR+M+ I +P ++ + P ++ E +
Sbjct: 137 ------VCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQN 183
Query: 296 KGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 355
K E I + L+NK P W++ Q + LNF GRVT ASVKNF
Sbjct: 184 KNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNF 222
Query: 356 QLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
Q++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct: 223 QIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 53/300 (17%)
Query: 119 QPGPHESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISL 175
+P P I+C I RD+ + F + EDG LLA RK +++ ++++IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 176 AANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAY 235
D SR +SY+GKLRSN +GTKFT+YD+ + P S S + L A
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN------GVNPQKASSSTLESGTLRQELAA- 128
Query: 236 NYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSL 295
+ YE NVL +GPR+M+ I +P ++ P ++ E +
Sbjct: 129 ------VCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQN 175
Query: 296 KGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 355
K E I + L+NK P W++ Q + LNF GRVT ASVKNF
Sbjct: 176 KNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNF 214
Query: 356 QLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
Q++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct: 215 QIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 153/300 (51%), Gaps = 53/300 (17%)
Query: 119 QPGPHESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISL 175
+P P I+C I RD+ + F + EDG LLA RK +++ ++++IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 176 AANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAY 235
D SR +SY+GKLRSN +GTKFT+YD+ + P S S + L A
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN------GVNPQKASSSTLESGTLRQELAA- 128
Query: 236 NYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSL 295
+ YE NVL +GPR+M+ I +P ++ P ++ E +
Sbjct: 129 ------VCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQN 175
Query: 296 KGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 355
K E I + L+NK P W++ + + LNF GRVT ASVKNF
Sbjct: 176 KNTESI---------------------IELQNKTPVWNDDTESYVLNFHGRVTQASVKNF 214
Query: 356 QLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
Q++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct: 215 QIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 150/302 (49%), Gaps = 61/302 (20%)
Query: 119 QPGPHESPIQCFIRRDRGTSTYHLCFGLVPSE----DGSDKL-LLAARKIRRATCTDFVI 173
+P P ++C + RD+ + G+ PS D K+ LLA RK +R+ +++I
Sbjct: 31 RPAPQGRTVRCRLTRDKKG----MDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 86
Query: 174 SLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLP 233
S+ + SR +++GKLRSN LG +FT++D+ G +R +S V+
Sbjct: 87 SIDPTNLSRGGENFIGKLRSNLLGNRFTVFDN-----------GQNPQRGYSTNVA---- 131
Query: 234 AYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFT 293
+ + ++ YE NVL RGPRRM I IP S E P + + ++ + T
Sbjct: 132 SLRQELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNASDGLLVRWQNKT 188
Query: 294 SLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVK 353
+ L NK P W++ + LNF+GRVT ASVK
Sbjct: 189 -------------------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK 223
Query: 354 NFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 413
NFQ+V A +P + ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K A
Sbjct: 224 NFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLA 274
Query: 414 CE 415
CE
Sbjct: 275 CE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 146/296 (49%), Gaps = 61/296 (20%)
Query: 119 QPGPHESPIQCFIRRDRGTSTYHLCFGLVPSE----DGSDKL-LLAARKIRRATCTDFVI 173
+P P ++C + RD+ + G+ PS D K+ LLA RK +R+ +++I
Sbjct: 7 RPAPQGRTVRCRLTRDKKG----MDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 62
Query: 174 SLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLP 233
S+ + SR +++GKLRSN LG +FT++D+ G +R +S V+
Sbjct: 63 SIDPTNLSRGGENFIGKLRSNLLGNRFTVFDN-----------GQNPQRGYSTNVA---- 107
Query: 234 AYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFT 293
+ + ++ YE NVL RGPRRM I IP S E P + + ++ + T
Sbjct: 108 SLRQELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNASDGLLVRWQNKT 164
Query: 294 SLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVK 353
+ L NK P W++ + LNF+GRVT ASVK
Sbjct: 165 -------------------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK 199
Query: 354 NFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFD 409
NFQ+V A +P + ++LQFG++ +D FT+DY YPL A QAFAI LSSFD
Sbjct: 200 NFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3CAN|A Chain A, Crystal Structure Of A Domain Of Pyruvate-Formate
Lyase-Activating Enzyme From Bacteroides Vulgatus Atcc
8482
Length = 182
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 45 LLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVV 85
L S DS+ H + ++P EL+L +RRV E++ + R ++
Sbjct: 62 LKSXDSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLI 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,815,134
Number of Sequences: 62578
Number of extensions: 452344
Number of successful extensions: 837
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 14
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)